Citrus Sinensis ID: 000720
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1333 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LK64 | 1514 | ABC transporter C family | yes | no | 0.944 | 0.831 | 0.481 | 0.0 | |
| Q7GB25 | 1514 | ABC transporter C family | no | no | 0.893 | 0.786 | 0.456 | 0.0 | |
| Q8VZZ4 | 1466 | ABC transporter C family | no | no | 0.900 | 0.819 | 0.470 | 0.0 | |
| Q9LK62 | 1493 | ABC transporter C family | no | no | 0.892 | 0.797 | 0.461 | 0.0 | |
| Q9M1C7 | 1506 | ABC transporter C family | no | no | 0.830 | 0.735 | 0.497 | 0.0 | |
| Q7FB56 | 1053 | Putative ABC transporter | no | no | 0.678 | 0.859 | 0.511 | 0.0 | |
| Q9LZJ5 | 1539 | ABC transporter C family | no | no | 0.890 | 0.771 | 0.386 | 0.0 | |
| Q9LYS2 | 1453 | ABC transporter C family | no | no | 0.822 | 0.754 | 0.404 | 0.0 | |
| Q7DM58 | 1516 | ABC transporter C family | no | no | 0.906 | 0.796 | 0.380 | 0.0 | |
| Q8LGU1 | 1464 | ABC transporter C family | no | no | 0.933 | 0.849 | 0.381 | 0.0 |
| >sp|Q9LK64|AB3C_ARATH ABC transporter C family member 3 OS=Arabidopsis thaliana GN=ABCC3 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 1134 bits (2934), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 641/1332 (48%), Positives = 875/1332 (65%), Gaps = 73/1332 (5%)
Query: 34 EILKRRRDDGYILMARRAAGLVIVLCNVLIFILYMGF-GFYEY---W--NFRIVSFKSVS 87
E LK RRD G+ + L L L+ ++ M GFY Y W N ++VS
Sbjct: 70 ESLKDRRDFGF------KSALFCSLALSLLNLVLMSLSGFYWYESGWLDNEQLVSSLGFL 123
Query: 88 L-VVTWALATVVALCSRYYRTLGEHKRWPLVLVLWWVVHLVIVLVCVSVYLLTHLSSIGL 146
L +V+W V+++C R EHK+ P +L LW V +LV+ + V + + +
Sbjct: 124 LGMVSWG---VLSICLHRCRDC-EHKKAPFLLRLWLVFYLVVSCYSLVVDFVMYERRETV 179
Query: 147 P-HILPEAKAVDFVSLPLLVLLCFNATYACCCARDPSDLDIPLLREED-----DEFLCKN 200
P H+L D V+ V L + A + L+ PLL D D+ + N
Sbjct: 180 PVHLL----VFDIVAFIAAVFLGYVAVLKKDRSNSNGVLEEPLLNGGDSRVGGDDSVELN 235
Query: 201 IST-------FASAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQSET----ANDASS 249
+ ++ AG+LS +TF W++ L G + L+L +P + +++ A S
Sbjct: 236 KTNGSGEATPYSRAGILSLLTFSWMSPLIDIGNKKTLDLEDVPQLHDTDSVVGLAPKFRS 295
Query: 250 LLEESLRKQKTDATS---LPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLS 306
+LE +++ T+ + + A W+ L + A FA + T+ASY+GP LI FV +L+
Sbjct: 296 MLESPDGGERSGVTTFKLIKALYFTAQWEIL-VTAFFAFIYTVASYVGPALIDTFVQYLN 354
Query: 307 GKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKF 366
G+ ++ H G VL F AK VE L+QR W+F ++GIR+RSAL +IY++ + +
Sbjct: 355 GRRQYN--HEGYVLVITFFAAKIVECLSQRHWFFRLQKVGIRMRSALVAMIYEKGLTLSC 412
Query: 367 A---GPSSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALF 423
G +SG IIN + VD ERIG+F Y+H W++ +QV LAL ILY+NLG A + AAL
Sbjct: 413 QSKQGRTSGEIINFMTVDAERIGNFSWYMHDPWMVLLQVGLALWILYRNLGLA-SIAALV 471
Query: 424 STIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRL 483
+TI VM+ N P QERF +MEAKD+R+K+TSE L++MR+LKL WE +FL K+ L
Sbjct: 472 ATIIVMLINFPFGRMQERFQEKLMEAKDSRMKSTSEILRNMRILKLQGWEMKFLSKIFDL 531
Query: 484 REIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQ 543
R+ E LKKY+Y + I+F+FW +PTLVSV TFG CILL PL SG +LSALATFRILQ
Sbjct: 532 RKSEEGWLKKYVYNSAVISFVFWGAPTLVSVSTFGACILLGIPLESGKILSALATFRILQ 591
Query: 544 EPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSK-ASDVAIDIEAGEYAWDA 602
EPIYNLP+ ISMI QTKVSL R+ ++ DN + I E K +SDVA+++ +WD
Sbjct: 592 EPIYNLPDTISMIVQTKVSLDRLASYLCLDNLQPDIVERLPKGSSDVAVEVINSTLSWDV 651
Query: 603 REENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKA 662
N PT+K + K+ G KVAVCG+VGSGKSSLLSS+LGE+P++SG+ +KV G KA
Sbjct: 652 SSSN---PTLKDIN-FKVFPGMKVAVCGTVGSGKSSLLSSLLGEVPKVSGS-LKVCGTKA 706
Query: 663 YVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722
YV QS WIQ+G I +NILFGK M + Y++VLE C+L++D+E+ + GD +V+GERGINLS
Sbjct: 707 YVAQSPWIQSGKIEDNILFGKPMERERYDKVLEACSLSKDLEILSFGDQTVIGERGINLS 766
Query: 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEF 782
GGQKQRIQ+ARA+Y ++D+Y+FDDPFSAVDAHTG+HLFK+ L+GLL K+V+Y THQ+EF
Sbjct: 767 GGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLCSKSVIYVTHQVEF 826
Query: 783 LDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQV-----NPPQEDKCL 837
L AADL+LVMKDG+I Q+GKY D++ + ++ + + AH+++L V N E L
Sbjct: 827 LPAADLILVMKDGRISQAGKYNDIL-NSGTDFMELIGAHQEALAVVDSVDANSVSEKSAL 885
Query: 838 SR---VPCQMSQITEERFARPISCGEFSGRS------QDEDTELGRVKWTVYSAFITLVY 888
+ + + E+ ++ + + Q+E+ E G V VY +ITL Y
Sbjct: 886 GQENVIVKDAIAVDEKLESQDLKNDKLESVEPQRQIIQEEEREKGSVALDVYWKYITLAY 945
Query: 889 KGALVPVILLCQVLFQALQMGSNYWIAWAT----DEKRKVSREQLIGVFIFLSGGSSFFI 944
GALVP ILL QVLFQ LQ+GSNYW+AWAT D + V L+ V++ L+ GSS I
Sbjct: 946 GGALVPFILLGQVLFQLLQIGSNYWMAWATPVSEDVQAPVKLSTLMIVYVALAFGSSLCI 1005
Query: 945 LGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYR 1004
L RA LL T KTA LF M +FR+P+SFFDSTPS RI++R STDQS VD ++PY+
Sbjct: 1006 LLRATLLVTAGYKTATELFHKMHHCIFRSPMSFFDSTPSGRIMSRASTDQSAVDLELPYQ 1065
Query: 1005 LAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAP 1064
+A +IQL+ II +MSQ +W VF +F+ ++ SIWYQ YYI AREL+R+VG KAP
Sbjct: 1066 FGSVAITVIQLIGIIGVMSQVSWLVFLVFIPVVAASIWYQRYYIAAARELSRLVGVCKAP 1125
Query: 1065 ILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFA 1124
++ HFSE+I+GATTIR F+QE RF + L D YS F+ G MEWLC R+++L +
Sbjct: 1126 LIQHFSETISGATTIRSFSQEFRFRSDNMRLSDGYSRPKFYTAGAMEWLCFRLDMLSSLT 1185
Query: 1125 FFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTN 1184
F L+ LV++P IDPSLAGLA TYGL+LN LQAW+IW LCN+ENK+ISVERILQ+ +
Sbjct: 1186 FVFSLVFLVSIPTGVIDPSLAGLAVTYGLSLNTLQAWLIWTLCNLENKIISVERILQYAS 1245
Query: 1185 IPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRT 1244
+PSE PLVI+++RP WPS G++E+ +L V+Y P +P+VL+GITCTF G + G+VGRT
Sbjct: 1246 VPSEPPLVIESNRPEQSWPSRGEVEIRDLQVRYAPHMPLVLRGITCTFKGGLRTGIVGRT 1305
Query: 1245 GSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLD 1304
GSGKSTLIQ LFR+VEPS G I IDGV+I IGL DLR RLSIIPQDP +F+GT+R+NLD
Sbjct: 1306 GSGKSTLIQTLFRIVEPSAGEIRIDGVNILTIGLHDLRLRLSIIPQDPTMFEGTMRSNLD 1365
Query: 1305 PLEQHSDQEIWE 1316
PLE+++D +IWE
Sbjct: 1366 PLEEYTDDQIWE 1377
|
Pump for glutathione S-conjugates. Mediates the transport of glutathione conjugates such as chlorodinitrobenzene-GS (DNB-GS), and of chlorophyll catabolites such as Bn-NCC-1. Transports also heavy metals such as cadmium (Cd). Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 6EC: .EC: 3EC: .EC: 4EC: 4 |
| >sp|Q7GB25|AB5C_ARATH ABC transporter C family member 5 OS=Arabidopsis thaliana GN=ABCC5 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 1093 bits (2826), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 572/1252 (45%), Positives = 809/1252 (64%), Gaps = 61/1252 (4%)
Query: 112 KRWPLVLVLWWVVHLVIVLVCVSVYLLTHLSSIGLPHILPEAKAVDFVSLPLLVLLCFNA 171
++ P ++ +WW + I L C L+ G A + P L LCF A
Sbjct: 139 EKLPFLVRIWWFLAFSICL-CTMYVDGRRLAIEGWSRCSSHVVA-NLAVTPALGFLCFLA 196
Query: 172 ---TYACCCARDPSDLDIPLLREEDDEFLCKNISTFASAGVLSKITFHWLNQLFQRGRIQ 228
R SDL PLL EE E C ++ +++AG++S IT WL+ L G +
Sbjct: 197 WRGVSGIQVTRSSSDLQEPLLVEE--EAACLKVTPYSTAGLVSLITLSWLDPLLSAGSKR 254
Query: 229 KLELLHIPPIPQSETANDASSLLEESLRKQKTDATSLP----QVIIHAVWKSLALNAAFA 284
LEL IP + + A + +L+ + ++ K++ S P + I+ + WK A NA FA
Sbjct: 255 PLELKDIPLLAPRDRAKSSYKVLKSNWKRCKSENPSKPPSLARAIMKSFWKEAACNAVFA 314
Query: 285 GVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANR 344
G+NT+ SY+GP+LI+ FV +L GK H G VLA +F +K +E++T RQWY G +
Sbjct: 315 GLNTLVSYVGPYLISYFVDYLGGKEIFP--HEGYVLAGIFFTSKLIETVTTRQWYMGVDI 372
Query: 345 IGIRVRSALTVLIYKRSM---AIKFAGPSSGIIINMINVDVERIGDFFLYIHRIWLLPVQ 401
+G+ VRSALT ++Y++ + +I +SG I+N + VDV+RIGD+ Y+H IW+LP+Q
Sbjct: 373 LGMHVRSALTAMVYRKGLKLSSIAKQNHTSGEIVNYMAVDVQRIGDYSWYLHDIWMLPMQ 432
Query: 402 VFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETL 461
+ LAL ILYK++G A A A L +TI ++ PLA QE + +M AKD R++ TSE L
Sbjct: 433 IVLALAILYKSVGIA-AVATLVATIISILVTIPLAKVQEDYQDKLMTAKDERMRKTSECL 491
Query: 462 KSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCI 521
++MRVLKL +WE + +L +RE E L+K LY+ + + F+FW+SP V+ +TF I
Sbjct: 492 RNMRVLKLQAWEDRYRVRLEEMREEEYGWLRKALYSQAFVTFIFWSSPIFVAAVTFATSI 551
Query: 522 LLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITE 581
L T LT+G VLSALATFRILQEP+ N P+L+SM+AQTKVSL RI F++E+ ++ T
Sbjct: 552 FLGTQLTAGGVLSALATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQEDATV 611
Query: 582 PTSKA-SDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLL 640
+ S++AI+I+ G + WD +PT+ +MK+ KG +VAVCG+VGSGKSS +
Sbjct: 612 VIPRGLSNIAIEIKDGVFCWDPFS---SRPTLSGI-QMKVEKGMRVAVCGTVGSGKSSFI 667
Query: 641 SSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALN 700
S ILGEIP+ISG +++ G YV QS+WIQ+G I ENILFG M ++ Y+ V++ C+L
Sbjct: 668 SCILGEIPKISGE-VRICGTTGYVSQSAWIQSGNIEENILFGSPMEKTKYKNVIQACSLK 726
Query: 701 QDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLF 760
+DIE+++ GD +++GERGINLSGGQKQR+QLARA+Y ++D+Y+ DDPFSA+DAHTG+ LF
Sbjct: 727 KDIELFSHGDQTIIGERGINLSGGQKQRVQLARALYQDADIYLLDDPFSALDAHTGSDLF 786
Query: 761 KQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKA 820
+ ++ L++KTV++ THQ+EFL AADL+LV+K+G+I QSGKY+DL+ ++ + A
Sbjct: 787 RDYILSALAEKTVVFVTHQVEFLPAADLILVLKEGRIIQSGKYDDLL-QAGTDFKALVSA 845
Query: 821 HRKSLDQV------------NPPQEDKCLSRVPCQMSQITEERFARPISCGEFSGR---- 864
H ++++ + NP ++ L + + E A+ + G +
Sbjct: 846 HHEAIEAMDIPSPSSEDSDENPIRDSLVLHNPKSDVFENDIETLAKEVQEGGSASDLKAI 905
Query: 865 ---------------SQDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMG 909
Q+E+ G+V VY +++ YKGAL+P+I+L Q FQ LQ+
Sbjct: 906 KEKKKKAKRSRKKQLVQEEERVKGKVSMKVYLSYMGAAYKGALIPLIILAQAAFQFLQIA 965
Query: 910 SNYWIAWAT----DEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLN 965
SN+W+AWA ++ KV L+ V+ L+ GSS FI RA L+AT + AQ+LFLN
Sbjct: 966 SNWWMAWANPQTEGDESKVDPTLLLIVYTALAFGSSVFIFVRAALVATFGLAAAQKLFLN 1025
Query: 966 MITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQA 1025
M+ SVFRAP+SFFDSTP+ RILNR S DQS VD DIP+RL G A IQL I+ +M+
Sbjct: 1026 MLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLCGIVAVMTNV 1085
Query: 1026 AWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQE 1085
WQVF L + + W Q YY+ ++REL R+V +K+PI+H F ESIAGA TIR F QE
Sbjct: 1086 TWQVFLLVVPVAVACFWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGAATIRGFGQE 1145
Query: 1086 NRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLA 1145
RF+ R+ L+D + F + +EWLCLR+ LL F +++LV+ P IDPS+A
Sbjct: 1146 KRFIKRNLYLLDCFVRPFFCSIAAIEWLCLRMELLSTLVFAFCMVLLVSFPHGTIDPSMA 1205
Query: 1146 GLAATYGLNLN-VLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPS 1204
GLA TYGLNLN L W++ + C +ENK+IS+ERI Q++ I EAP +I++ RP WP+
Sbjct: 1206 GLAVTYGLNLNGRLSRWIL-SFCKLENKIISIERIYQYSQIVGEAPAIIEDFRPPSSWPA 1264
Query: 1205 SGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGG 1264
+G IEL ++ V+Y LP VL G++C FPG KKIG+VGRTGSGKSTLIQALFR++EP+ G
Sbjct: 1265 TGTIELVDVKVRYAENLPTVLHGVSCVFPGGKKIGIVGRTGSGKSTLIQALFRLIEPTAG 1324
Query: 1265 RILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWE 1316
+I ID +DIS IGL DLRSRL IIPQDP LF+GT+R NLDPLE+HSD +IWE
Sbjct: 1325 KITIDNIDISQIGLHDLRSRLGIIPQDPTLFEGTIRANLDPLEEHSDDKIWE 1376
|
Pump for glutathione S-conjugates. Involved in regulation of K(+) and Na(+) cell content. Mediates resistance to NaCl and Li(+), confers sensitivity to sulfonylurea drugs such as glibenclamide (inducer of stomatal opening), and required for stomatal opening regulation by auxin, abscisic acid (ABA) and external Ca(2+). Transports oestradiol-17-(beta-D-glucuronide) (E(2)17G). Involved in the root auxin content regulation that controls the transition from primary root elongation to lateral root formation. Plays a role in ABA-mediated germination inhibition. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q8VZZ4|AB6C_ARATH ABC transporter C family member 6 OS=Arabidopsis thaliana GN=ABCC6 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 1078 bits (2787), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 590/1253 (47%), Positives = 818/1253 (65%), Gaps = 52/1253 (4%)
Query: 90 VTWALATVVALCSRYYRTLGEHKRWPLVLVLWWVVHLVIVLVCVSVYLLTHLSSIGLPHI 149
+TW + V L RY + ++ +L +WWV V VS Y HL + +
Sbjct: 101 LTWG-SISVYLFGRYTNSC--EQKVLFLLRVWWVFFFV-----VSCY---HLVVDFVLYK 149
Query: 150 LPEAKAVDFVSLPLLVLLCFNATYACCCARDPSD------LDIPLLREEDDEFLCKNIST 203
E +V FV + LV +C C C + L PLL + + +
Sbjct: 150 KQEMVSVHFV-ISDLVGVCAGLFLCCSCLWKKGEGERIDLLKEPLLSSAESSDNEEVTAP 208
Query: 204 FASAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQSETANDA----SSLLEESLRKQK 259
F+ AG+LS+++F W++ L G + +++ +P + +S+T S LE +++
Sbjct: 209 FSKAGILSRMSFSWMSPLITLGNEKIIDIKDVPQLDRSDTTESLFWIFRSKLEWDDGERR 268
Query: 260 TDATSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLV 319
L + + +VW+ + L+A A V T++ Y+ P+L+ NFV +L+G + + Y V
Sbjct: 269 ITTFKLIKALFLSVWRDIVLSALLAFVYTVSCYVAPYLMDNFVQYLNGNRQYKNQGY--V 326
Query: 320 LASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKF---AGPSSGIIIN 376
L + F AK VE TQRQW+F + G+ +RS L +IY++ + + G +SG IIN
Sbjct: 327 LVTTFFVAKLVECQTQRQWFFRGQKAGLGMRSVLVSMIYEKGLTLPCHSKQGHTSGEIIN 386
Query: 377 MINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLA 436
++ VD +RI F ++H W+L +QV LAL ILYK+LG + AA +TI VM++N P A
Sbjct: 387 LMAVDADRISAFSWFMHDPWILVLQVSLALWILYKSLGLG-SIAAFPATILVMLANYPFA 445
Query: 437 NRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLY 496
+E+F S +M++KD R+K TSE L +M++LKL WE +FL K+L LR IE LKK++Y
Sbjct: 446 KLEEKFQSSLMKSKDNRMKKTSEVLLNMKILKLQGWEMKFLSKILELRHIEAGWLKKFVY 505
Query: 497 TCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMI 556
SAI + WA+P+ +S FG C+LLK PL SG +L+ALATFRILQ PIY LPE ISMI
Sbjct: 506 NSSAINSVLWAAPSFISATAFGACLLLKIPLESGKILAALATFRILQGPIYKLPETISMI 565
Query: 557 AQTKVSLYRIQEFIKEDN-QKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLT 615
QTKVSL RI F+ D+ Q+ + S +S++A++I G ++WD ++ PT++
Sbjct: 566 VQTKVSLNRIASFLCLDDLQQDVVGRLPSGSSEMAVEISNGTFSWD---DSSPIPTLRDM 622
Query: 616 DKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTI 675
+ K+ +G VA+CG+VGSGKSSLLSSILGE+P+ISG +KV G+KAY+ QS WIQ+G +
Sbjct: 623 N-FKVSQGMNVAICGTVGSGKSSLLSSILGEVPKISGN-LKVCGRKAYIAQSPWIQSGKV 680
Query: 676 RENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735
ENILFGK M + +Y+ VLE C+LN+D+E+ D +V+GERGINLSGGQKQRIQ+ARA+
Sbjct: 681 EENILFGKPMEREWYDRVLEACSLNKDLEILPFHDQTVIGERGINLSGGQKQRIQIARAL 740
Query: 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDG 795
Y ++D+Y+FDDPFSAVDAHTG+HLFK+ L+GLL KTV+Y THQ+EFL ADL+LVMKDG
Sbjct: 741 YQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRHKTVIYVTHQVEFLPEADLILVMKDG 800
Query: 796 KIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARP 855
KI Q+GKY +++ D ++ + + AH ++L + D C + + S +E
Sbjct: 801 KITQAGKYHEIL-DSGTDFMELVGAHTEALATI-----DSCETGYASEKSTTDKENEVLH 854
Query: 856 ISCGEFSGRS--------QDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQ 907
+ +G Q+E+ E G+V +TVY ++ L Y GA++P+IL+ QVLFQ L
Sbjct: 855 HKEKQENGSDNKPSGQLVQEEEREKGKVGFTVYKKYMALAYGGAVIPLILVVQVLFQLLS 914
Query: 908 MGSNYWIAWAT----DEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLF 963
+GSNYW+ W T D + VS LI V++ L+ SSF IL RA+L+A K A LF
Sbjct: 915 IGSNYWMTWVTPVSKDVEPPVSGFTLILVYVLLAVASSFCILIRALLVAMTGFKMATELF 974
Query: 964 LNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMS 1023
M +FRA +SFFD+TP RILNR STDQS D +P + A +A A I +L II ++
Sbjct: 975 TQMHLRIFRASMSFFDATPMGRILNRASTDQSVADLRLPGQFAYVAIAAINILGIIGVIV 1034
Query: 1024 QAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFN 1083
Q AWQV +F+ ++ WY+ YYI+ ARELAR+ G ++P++HHFSE+++G TTIR F+
Sbjct: 1035 QVAWQVLIVFIPVVAACAWYRQYYISAARELARLAGISRSPVVHHFSETLSGITTIRSFD 1094
Query: 1084 QENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAIDPS 1143
QE RF L D YS + FH+ G MEWLC R+ LL FAF L+ILV+ P I+PS
Sbjct: 1095 QEPRFRGDIMRLSDCYSRLKFHSTGAMEWLCFRLELLSTFAFASSLVILVSAPEGVINPS 1154
Query: 1144 LAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWP 1203
LAGLA TY LNLN LQA +IW LC++ENKMISVER+LQ+TNIPSE PLVI+ +RP WP
Sbjct: 1155 LAGLAITYALNLNTLQATLIWTLCDLENKMISVERMLQYTNIPSEPPLVIETTRPEKSWP 1214
Query: 1204 SSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG 1263
S G+I + NL V+Y P LPMVL G+TCTFPG K G+VGRTG GKSTLIQ LFR+VEP+
Sbjct: 1215 SRGEITICNLQVRYGPHLPMVLHGLTCTFPGGLKTGIVGRTGCGKSTLIQTLFRIVEPAA 1274
Query: 1264 GRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWE 1316
G I IDG++I IGL DLRSRLSIIPQDP +F+GT+R+NLDPLE+++D +IWE
Sbjct: 1275 GEIRIDGINILSIGLHDLRSRLSIIPQDPTMFEGTIRSNLDPLEEYTDDQIWE 1327
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9LK62|AB7C_ARATH ABC transporter C family member 7 OS=Arabidopsis thaliana GN=ABCC7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1070 bits (2767), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 574/1243 (46%), Positives = 819/1243 (65%), Gaps = 53/1243 (4%)
Query: 107 TLGEHKRWPLVLVLWWVVHLVI----VLVCVSVYLLTHLSSIGLPHILPEAKAVDFVSLP 162
T +++P++L +WWV++ + +LV +++Y L S+ H+L D +++
Sbjct: 127 TYSHDQKFPILLRVWWVLYFMFSCYRLLVDIALYKKQELVSV---HLLLS----DVLAVS 179
Query: 163 LLVLLCFNA---------------TYACCCARDPSDLDIPLLREEDDEFLCKNISTFASA 207
+ + LC++ A + + L + EDDE ++ F++A
Sbjct: 180 VGLFLCYSCLQKQGQGERINLLLEEPLLNGAESSAATSVQLDKAEDDEV----VTPFSNA 235
Query: 208 GVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQSETANDA----SSLLEESLRKQKTDAT 263
G LS ++F W++ L G + ++ +P + S+ A S LE +++
Sbjct: 236 GFLSHVSFSWMSPLIVLGNEKIIDSEDVPQVDNSDRAEKLFWIFRSKLEWDDGERRITTY 295
Query: 264 SLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASV 323
L + + +VW+ + L+ FA V T++ Y+ P+L+ FV +L+G+ +S + G+VL +
Sbjct: 296 KLIKALFFSVWRDILLSTLFAFVYTVSCYVAPYLMDTFVQYLNGQRQYS--NQGVVLVTT 353
Query: 324 FLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKF---AGPSSGIIINMINV 380
F AK VE +R WYF + GI +RS L +IY++ + + G +SG IIN++ V
Sbjct: 354 FFVAKLVECQARRNWYFRLQKAGIGMRSVLVSMIYEKGLTLPCYSKQGHTSGEIINLMTV 413
Query: 381 DVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQE 440
D ERI F Y+H W+L +Q+ LAL+ILY++LG + AA +T VM+ N PLA +E
Sbjct: 414 DAERISAFSWYMHDPWILVLQISLALLILYRSLGLG-SIAAFAATFLVMLGNIPLAKLEE 472
Query: 441 RFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSA 500
+F +ME+KD R+K TSE L +MR+LKL WE +FL K+L LR IE LKK++Y +A
Sbjct: 473 KFQGNLMESKDNRMKKTSEALLNMRILKLQGWEMKFLHKILDLRGIEAGWLKKFVYNSAA 532
Query: 501 IAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTK 560
I+ + WA+P+ VS FG C+LLK PL SG +++ALATFRILQ PIY LP+ ISMI QTK
Sbjct: 533 ISSVLWAAPSFVSATAFGACMLLKIPLESGKIIAALATFRILQTPIYKLPDTISMIVQTK 592
Query: 561 VSLYRIQEFIKEDN-QKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMK 619
VSL RI F+ D+ Q+ + S +S + +++ G ++WD ++ PT+K + K
Sbjct: 593 VSLDRIATFLCLDDLQQDGMERLPSGSSKMDVEVSNGAFSWD---DSSPIPTLK-DIRFK 648
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENI 679
I G +A+CG+VGSGKSSLLSSILGE+P+ISG +KV G+KAY+ QS WIQ+G + ENI
Sbjct: 649 IPHGMNIAICGTVGSGKSSLLSSILGEVPKISGN-LKVCGRKAYIAQSPWIQSGKVEENI 707
Query: 680 LFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNS 739
LFGK M++ +Y+ VLE C+LN+D+E++ D +V+GERGINLSGGQKQRIQ+ARA+Y ++
Sbjct: 708 LFGKPMQREWYQRVLEACSLNKDLEVFPFRDQTVIGERGINLSGGQKQRIQIARALYQDA 767
Query: 740 DVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQ 799
D+Y+FDDPFSAVDAHTG+HLFK+ L+GLL KTV+Y THQLEFL ADL+LVMKDG+I Q
Sbjct: 768 DIYLFDDPFSAVDAHTGSHLFKEVLLGLLRNKTVIYVTHQLEFLPEADLILVMKDGRITQ 827
Query: 800 SGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSR-VPCQMSQITEERFARPISC 858
+GKY +++ + ++ + + AH +L V+ ++ ++ + S+++ + +
Sbjct: 828 AGKYNEIL-ESGTDFMELVGAHTDALAAVDSYEKGSASAQSTTSKESKVSNDEEKQEEDL 886
Query: 859 GEFSGR-SQDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWA 917
G+ Q+E+ E G+V +TVY ++ L Y GALVP+IL+ Q+LFQ L +GSNYW+AW
Sbjct: 887 PSPKGQLVQEEEREKGKVGFTVYQKYMKLAYGGALVPIILVVQILFQVLNIGSNYWMAWV 946
Query: 918 T----DEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRA 973
T D K VS LI V++FL+ SSF IL RA+L A K A LF M +FRA
Sbjct: 947 TPVSKDVKPLVSGSTLILVYVFLATASSFCILVRAMLSAMTGFKIATELFNQMHFRIFRA 1006
Query: 974 PISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLF 1033
+SFFD+TP RILNR STDQS VD +P + + LA A + +L II +M Q AWQV +F
Sbjct: 1007 SMSFFDATPIGRILNRASTDQSAVDLRLPSQFSNLAIAAVNILGIIGVMGQVAWQVLIVF 1066
Query: 1034 LVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSH 1093
+ ++ WY+ YYI+ ARELAR+ G ++P++ HFSE+++G TTIR F+QE RF
Sbjct: 1067 IPVIAACTWYRQYYISAARELARLSGISRSPLVQHFSETLSGITTIRSFDQEPRFRTDIM 1126
Query: 1094 SLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYGL 1153
L D YS + FH MEWLC R++LL AF L L+ILV++P I+PS AGLA TY L
Sbjct: 1127 RLNDCYSRLRFHAISAMEWLCFRLDLLSTVAFALSLVILVSVPEGVINPSFAGLAVTYAL 1186
Query: 1154 NLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENL 1213
NLN LQA +IW LC++ENKMISVER+LQ+ +IPSE LVI+++RP WP G+I + NL
Sbjct: 1187 NLNSLQATLIWTLCDLENKMISVERMLQYIDIPSEPSLVIESTRPEKSWPCRGEITICNL 1246
Query: 1214 LVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDI 1273
V+Y P LPMVL+G+TCTF G K G+VGRTG GKSTLIQ LFR+VEP+ G I IDG++I
Sbjct: 1247 QVRYGPHLPMVLRGLTCTFRGGLKTGIVGRTGCGKSTLIQTLFRIVEPAAGEIRIDGINI 1306
Query: 1274 SMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWE 1316
IGL DLRSRLSIIPQ+P +F+GTVR+NLDPLE+++D +IWE
Sbjct: 1307 LTIGLHDLRSRLSIIPQEPTMFEGTVRSNLDPLEEYADDQIWE 1349
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9M1C7|AB9C_ARATH ABC transporter C family member 9 OS=Arabidopsis thaliana GN=ABCC9 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 1069 bits (2765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 566/1137 (49%), Positives = 763/1137 (67%), Gaps = 30/1137 (2%)
Query: 202 STFASAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQSETANDASSLLEESLR----K 257
S + +A + +ITF W+N LF G + LE +P I ++A S ++ L+ K
Sbjct: 235 SPYGNATLFQRITFSWINPLFSLGYKRPLEKDDVPDIDVKDSARFCSHAFDQKLKTTKEK 294
Query: 258 QKTDATSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYG 317
+ ++ VW+ A+NA FA VN +YIGP+LI +FV FLS K S H G
Sbjct: 295 EGPGNAFFYNSVLRYVWRKAAINAVFAVVNASTAYIGPYLINDFVEFLSEKQSQSLNH-G 353
Query: 318 LVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAG---PSSGII 374
+LA FL AK VE++TQRQW FGA ++G+R+R+AL IY++ + + +SG I
Sbjct: 354 YLLALGFLTAKIVETVTQRQWIFGARQLGLRLRAALISHIYQKGLVLSSQSRQSHTSGEI 413
Query: 375 INMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTP 434
IN ++VDV+RI DF Y++ IW+LP+Q+F A+ IL K+LG A AAL +T+ VM N P
Sbjct: 414 INYMSVDVQRITDFIWYVNNIWMLPIQIFSAIYILQKHLGLG-ALAALVTTLMVMACNYP 472
Query: 435 LANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKY 494
L Q + S IM AKD R+KATSE LK+M++LKL +W+ +FL K+ LR+ E D L K
Sbjct: 473 LTRLQRNYQSDIMNAKDDRMKATSEILKNMKILKLQAWDNQFLNKVKTLRKKEYDCLWKS 532
Query: 495 LYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELIS 554
L + F+ W +P+L+SV+TF C+L+ LT+GAVLSALATF++LQ PI+ LP+L+S
Sbjct: 533 LRLQAFTTFILWGAPSLISVVTFVTCMLMGVKLTAGAVLSALATFQMLQSPIFGLPDLLS 592
Query: 555 MIAQTKVSLYRIQEFIKEDNQKKPITEPTSK-ASDVAIDIEAGEYAWDAREENFKKPTIK 613
+ Q+KVS RI ++++ +K E SK ++++++IE G ++W E +PT+
Sbjct: 593 ALVQSKVSADRIASYLQQSETQKDAVEYCSKDHTELSVEIENGAFSW---EPESSRPTLD 649
Query: 614 LTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTG 673
+ +K+ G KVAVCG+VGSGKSSLLSSILGEI ++ G ++V GK+AYVPQS WI +G
Sbjct: 650 DIE-LKVKSGMKVAVCGAVGSGKSSLLSSILGEIQKLKGT-VRVSGKQAYVPQSPWILSG 707
Query: 674 TIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733
TIR+NILFG YE ++ CAL +D E++++GDL+ +GERGIN+SGGQKQRIQ+AR
Sbjct: 708 TIRDNILFGSMYESEKYERTVKACALIKDFELFSNGDLTEIGERGINMSGGQKQRIQIAR 767
Query: 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMK 793
AVY N+D+Y+ DDPFSAVDAHTG LF+ CLMG+L KTVLY THQ+EFL AADL+LVM+
Sbjct: 768 AVYQNADIYLLDDPFSAVDAHTGRELFEDCLMGILKDKTVLYVTHQVEFLPAADLILVMQ 827
Query: 794 DGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQV----------NPPQEDKCLSRVPCQ 843
+G++ Q+GK+E+L+ QN + AH ++LD + +D S
Sbjct: 828 NGRVMQAGKFEELLK-QNIGFEVLVGAHNEALDSILSIEKSSRNFKEGSKDDTASIAESL 886
Query: 844 MSQITEERFARPISCGEFSGRSQDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLF 903
+ E + + + QDE+TE G + VY A++T V G LVP I+L Q F
Sbjct: 887 QTHCDSEHNISTENKKKEAKLVQDEETEKGVIGKEVYLAYLTTVKGGLLVPFIILAQSCF 946
Query: 904 QALQMGSNYWIAWAT----DEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTA 959
Q LQ+ SNYW+AW + K+ +++ V+ L+ GSS +L R +L+A + TA
Sbjct: 947 QMLQIASNYWMAWTAPPTAESIPKLGMGRILLVYALLAAGSSLCVLARTILVAIGGLSTA 1006
Query: 960 QRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSII 1019
+ F M+ S+FRAP+SFFDSTP+ RILNR STDQS +D ++ +L AF++IQ++ I
Sbjct: 1007 ETFFSRMLCSIFRAPMSFFDSTPTGRILNRASTDQSVLDLEMAVKLGWCAFSIIQIVGTI 1066
Query: 1020 ILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTI 1079
+MSQ AWQV +F+ + ++YQ YY TAREL+RM G +APILHHF+ES+AGATTI
Sbjct: 1067 FVMSQVAWQVCVIFIPVAVACVFYQRYYTPTARELSRMSGVERAPILHHFAESLAGATTI 1126
Query: 1080 RCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSA 1139
R F+Q +RF+ + LID +S FH MEWL R+NLL +F F L++LVTLP
Sbjct: 1127 RAFDQRDRFISSNLVLIDSHSRPWFHVASAMEWLSFRLNLLSHFVFAFSLVLLVTLPEGV 1186
Query: 1140 IDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPS 1199
I+PS+AGL TYGL+LNVLQA VIWN+CN ENKMISVERILQ++ IPSEAPLVI RP
Sbjct: 1187 INPSIAGLGVTYGLSLNVLQATVIWNICNAENKMISVERILQYSKIPSEAPLVIDGHRPL 1246
Query: 1200 PEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVV 1259
WP+ G I +L V+Y P VLK ITC FPG KKIGVVGRTGSGKSTLIQALFR+V
Sbjct: 1247 DNWPNVGSIVFRDLQVRYAEHFPAVLKNITCEFPGGKKIGVVGRTGSGKSTLIQALFRIV 1306
Query: 1260 EPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWE 1316
EPS G I+ID VDI+ IGL DLRSRL IIPQDP LF GT+R NLDPL Q++D EIWE
Sbjct: 1307 EPSQGTIVIDNVDITKIGLHDLRSRLGIIPQDPALFDGTIRLNLDPLAQYTDHEIWE 1363
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q7FB56|AB15C_ARATH Putative ABC transporter C family member 15 OS=Arabidopsis thaliana GN=ABCC15 PE=5 SV=2 | Back alignment and function description |
|---|
Score = 960 bits (2481), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 483/944 (51%), Positives = 646/944 (68%), Gaps = 39/944 (4%)
Query: 378 INVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLAN 437
++VDV+RI DF Y++ IW+LP+Q+F A+ IL K+LG A AAL +T+ VM N PL
Sbjct: 1 MSVDVQRITDFIWYVNSIWMLPIQIFSAIYILQKHLGLG-ALAALVTTLMVMACNYPLTR 59
Query: 438 RQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYT 497
Q + S IM AKD R+KATSE LK+M++LKL +W+ +FL K+ LR+ E D L K L
Sbjct: 60 LQRNYQSDIMNAKDDRMKATSEILKNMKILKLQAWDNQFLNKVKTLRKKEYDCLWKSLRL 119
Query: 498 CSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIA 557
F+ W +P+L+SV+TF C+L+ LT+GAVLSALATF++LQ PI+ LP+L+S +
Sbjct: 120 QDFTTFILWGAPSLISVVTFVTCMLMGVKLTAGAVLSALATFQMLQSPIFGLPDLLSALV 179
Query: 558 QTKVSLYRIQEFIKE-DNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD 616
Q+KVS RI ++++ + QK + ++ ++ +++IE G ++W E +PT+ +
Sbjct: 180 QSKVSADRIASYLQQSETQKDAVEYCSNDHTEFSVEIENGAFSW---EPESSRPTLDDIE 236
Query: 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIR 676
+K+ G KVA+CG+VGSGKSSL SSILGEI ++ G ++V GK+AYVPQS WI +GTIR
Sbjct: 237 -LKVKSGMKVAICGAVGSGKSSLPSSILGEIQKLKGT-VRVSGKQAYVPQSPWILSGTIR 294
Query: 677 ENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY 736
+NILFG YE ++ CAL +D E++++GDL+ +GERGIN+SGGQKQRIQ+ARAVY
Sbjct: 295 DNILFGSIYESEKYERTVKACALIKDFELFSNGDLTEIGERGINMSGGQKQRIQIARAVY 354
Query: 737 SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGK 796
N+D+Y+ DDPFSAVDAHTG LF+ CLMG+L KTVLY THQ+EFL AADL+LVM++G+
Sbjct: 355 QNADIYLLDDPFSAVDAHTGRELFEDCLMGILKDKTVLYVTHQVEFLPAADLILVMQNGR 414
Query: 797 IEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARPI 856
+ Q+GK+E+L+ V ++ N +E K +
Sbjct: 415 VMQAGKFEELLKQNIGFEVLTQCDSEHNISTENKKKEAKLV------------------- 455
Query: 857 SCGEFSGRSQDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAW 916
QDE+TE G + VY ++T V G LVP I+L Q FQ LQ+ SNYW+AW
Sbjct: 456 ---------QDEETEKGVIGKEVYLTYLTTVKGGLLVPFIILAQSCFQMLQIASNYWMAW 506
Query: 917 ----ATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFR 972
+ K+ +++ V+ L+ GSS +L R +L+A + TA+ F M+ S+FR
Sbjct: 507 TAPPTAESIPKLGMGRILLVYALLAAGSSLCVLARTILVAIGGLSTAETFFSRMLCSIFR 566
Query: 973 APISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPL 1032
AP+S+FDSTP+ RILNR STDQS +D ++ +L AF++IQ++ I +MSQ AWQV +
Sbjct: 567 APMSYFDSTPTGRILNRASTDQSVLDLEMAVKLGWCAFSIIQIVGTIFVMSQVAWQVCVI 626
Query: 1033 FLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRS 1092
F+ + ++YQ YY T REL+RM G +APILHHF+ES+AGATTIR F+Q +RF+ +
Sbjct: 627 FIPVAVACVFYQRYYTPTERELSRMSGVERAPILHHFAESLAGATTIRAFDQRDRFISSN 686
Query: 1093 HSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYG 1152
LID +S FH MEWL R+NLL +F F L++LVTLP I+PS+AGL TYG
Sbjct: 687 LVLIDSHSRPWFHVASAMEWLSFRLNLLSHFVFAFSLVLLVTLPEGVINPSIAGLGVTYG 746
Query: 1153 LNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELEN 1212
L+LNVLQA VIWN+CN ENKMISVERILQ + IPSEAPLVI + RP WP+ G I +
Sbjct: 747 LSLNVLQATVIWNICNAENKMISVERILQHSKIPSEAPLVIDDQRPLDNWPNVGSIVFRD 806
Query: 1213 LLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVD 1272
L V+Y P VLK ITC FPG KKIGVVGRTGSGKSTLIQALFR+VEPS G I+ID VD
Sbjct: 807 LQVRYAEHFPAVLKNITCAFPGGKKIGVVGRTGSGKSTLIQALFRIVEPSHGTIVIDNVD 866
Query: 1273 ISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWE 1316
I+ IGL DLRSRL IIPQD LF GT+R NLDPL Q++D+EIWE
Sbjct: 867 ITKIGLHDLRSRLGIIPQDNALFDGTIRLNLDPLAQYTDREIWE 910
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9LZJ5|AB14C_ARATH ABC transporter C family member 14 OS=Arabidopsis thaliana GN=ABCC14 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 843 bits (2179), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/1261 (38%), Positives = 729/1261 (57%), Gaps = 74/1261 (5%)
Query: 115 PLVLVLWWVVHLVIVLVCVSVYLLTHLSSIGLPHILPEAKAVDFVSLPLL-VLLCFNATY 173
PL L ++WV + V+ + +L LS L F+S PL VLL +
Sbjct: 160 PLTLRIYWVFNFVVTTLFTVSGILHLLSDDPAAASLRADDVASFISFPLTAVLLLVSIKG 219
Query: 174 ACCCARDPSDLDIPLLREEDDEFLCKNISTFASAGVLSKITFHWLNQLFQRGRIQKLELL 233
+ S++ P + +N+S +ASA +SK + W+N L ++G L L
Sbjct: 220 STGVVVTTSNVTAPAKSNDVVVEKSENVSLYASASFISKTFWLWMNPLLRKGYKSPLNLD 279
Query: 234 HIPPIPQSETANDASSLLEESLRK-QKTDATSLPQVIIHAVWKSLALNAAFAGVNTIASY 292
+P + A ++L E K Q+ + +I WK +A A A + Y
Sbjct: 280 QVPTLSPEHRAEKLATLFESKWPKPQENSRNPVRTTLIRCFWKEIAFTAVLAIIRLSVIY 339
Query: 293 IGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSA 352
+GP LI +FV F SGK S Y LVL + L AK VE L+ Q+ F + ++G+ +RS
Sbjct: 340 VGPVLIQSFVDFTSGKRSSPSQGYYLVL--ILLIAKFVEVLSTHQFNFNSQKLGMLIRST 397
Query: 353 LTVLIYKRSMAIKFAGPSS---GIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVIL 409
L +YK+ + + + + G I+N + VD +++ D L +H IWL+P+QV A+V+L
Sbjct: 398 LITALYKKGLKLTGSARQNHGVGQIVNYMAVDAQQLSDMMLQLHAIWLMPLQVAAAIVLL 457
Query: 410 YKNLGAAPAFAALFST---IFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRV 466
Y LG + + T +F+++ R R+ +M +D+R+KAT+E L MRV
Sbjct: 458 YNTLGPSVVTTVIGLTGIFVFILLGT----KRNNRYQFSLMMNRDSRMKATNEMLNYMRV 513
Query: 467 LKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTP 526
+K +WE F +++L+ RE+E L K+LY+ + + W++P L+S +TF + L
Sbjct: 514 IKFQAWEDHFNERILKFREMEFGWLSKFLYSIAGNIIVLWSTPVLISALTFTTAVFLGVK 573
Query: 527 LTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKA 586
L +G V + F+ILQEPI P+ + ++Q +SL R+ ++ + E +
Sbjct: 574 LDAGTVFTTTTIFKILQEPIRTFPQSMISLSQAMISLGRLDAYMMSRELSEETVERSQGC 633
Query: 587 S-DVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILG 645
+VA++I+ G ++WD ++ +P I+ + ++ KG A+ G+VGSGKSSLL+S+LG
Sbjct: 634 DGNVAVEIKDGSFSWDDEDD---EPAIENIN-FEVKKGELAAIVGTVGSGKSSLLASVLG 689
Query: 646 EIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEM 705
E+ ++SG ++V G AYV Q+SWIQ GT+++NILFG M +S Y EVL+ C L +D+++
Sbjct: 690 EMHKLSGK-VRVCGTTAYVAQTSWIQNGTVQDNILFGLPMNRSKYNEVLKVCCLEKDMQI 748
Query: 706 WADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLM 765
GD + +GERGINLSGGQKQRIQLARAVY SDVY+ DD FSAVDAHTG+ +FK+C+
Sbjct: 749 MEFGDQTEIGERGINLSGGQKQRIQLARAVYQESDVYLLDDVFSAVDAHTGSDIFKKCVR 808
Query: 766 GLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIAD--QNSELVRQMKAHRK 823
G L KT+L THQ++FL D +LVM+DG I QSGKY++L++ ELV AH
Sbjct: 809 GALKGKTILLVTHQVDFLHNVDRILVMRDGMIVQSGKYDELVSSGLDFGELV---AAHET 865
Query: 824 SLDQVNPPQEDKCLSRVPC-----------------------QMSQITEERFARPISC-- 858
S++ V + VP + + + R R S
Sbjct: 866 SMELVEAGSASATAANVPMASPITQRSISIESPRQPKSPKVHRTTSMESPRVLRTTSMES 925
Query: 859 ---GEFSGRS-----------------QDEDTELGRVKWTVYSAFITLVYKGALVPVILL 898
E + S ++E+ E+G+V + VY + T Y + +++
Sbjct: 926 PRLSELNDESIKSFLGSNIPEDGSRLIKEEEREVGQVSFQVYKLYSTEAYGWWGMILVVF 985
Query: 899 CQVLFQALQMGSNYWIAWATDEKRKVSREQ--LIGVFIFLSGGSSFFILGRAVLLATIAI 956
V +QA M S+YW+A+ T K +VS + I V++ ++ S + RA + + +
Sbjct: 986 FSVAWQASLMASDYWLAYETSAKNEVSFDATVFIRVYVIIAAVSIVLVCLRAFYVTHLGL 1045
Query: 957 KTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLL 1016
KTAQ F ++ S+ AP+SFFD+TPS RIL+R STDQ+ VD IP+ + +A LL
Sbjct: 1046 KTAQIFFKQILNSLVHAPMSFFDTTPSGRILSRASTDQTNVDIFIPFMIGLVATMYTTLL 1105
Query: 1017 SIIILMSQAAWQVFPLFLVILG-ISIWYQAYYITTARELARMVGTRKAPILHHFSESIAG 1075
SI I+ Q AW F++ LG ++IWY+ YY+ ++REL R+ KAP++HHFSESIAG
Sbjct: 1106 SIFIVTCQYAWPTV-FFIIPLGWLNIWYRGYYLASSRELTRLDSITKAPVIHHFSESIAG 1164
Query: 1076 ATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTL 1135
TIR F ++ F + ++ + FHN G+ EWL R+ L+ ++ + + +V L
Sbjct: 1165 VMTIRAFKKQPMFRQENVKRVNANLRMDFHNNGSNEWLGFRLELIGSWVLCISALFMVML 1224
Query: 1136 PRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKN 1195
P + I P GL+ +YGL+LN + W I+ C +ENKM+SVERI QFT+IP+EA IK
Sbjct: 1225 PSNIIKPENVGLSLSYGLSLNGVLFWAIYLSCFIENKMVSVERIKQFTDIPAEAKWEIKE 1284
Query: 1196 SRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQAL 1255
SRP P WP G I LE++ V+Y P P+VLKG+T G +KIGVVGRTGSGKSTLIQ L
Sbjct: 1285 SRPPPNWPYKGNIRLEDVKVRYRPNTPLVLKGLTIDIKGGEKIGVVGRTGSGKSTLIQVL 1344
Query: 1256 FRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIW 1315
FR+VEPSGG+I+IDG+DI +GL DLRSR IIPQ+P+LF+GTVR+N+DP E++SD+EIW
Sbjct: 1345 FRLVEPSGGKIIIDGIDICTLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPTEKYSDEEIW 1404
Query: 1316 E 1316
+
Sbjct: 1405 K 1405
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9LYS2|AB10C_ARATH ABC transporter C family member 10 OS=Arabidopsis thaliana GN=ABCC10 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 832 bits (2149), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 459/1134 (40%), Positives = 691/1134 (60%), Gaps = 38/1134 (3%)
Query: 201 ISTFASAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQSETANDASSLLEESLRKQK- 259
+S FA AG+ S ++F WLN L +RG ++ LE IP + + E A SL EE+L +QK
Sbjct: 204 VSQFAKAGLFSTLSFWWLNSLIKRGNVKDLEEEDIPELRKEERAETCYSLFEENLIEQKR 263
Query: 260 ----TDATSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYH 315
+ S+ +V + VW+ L + FA + +A GP L+ F+ G ++S+
Sbjct: 264 RLGSSCQPSILKVTVLCVWRELLTSGFFAFMKIVAVSAGPLLLNAFILVAEG---NASFR 320
Query: 316 Y-GLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAG---PSS 371
Y GLVLA + F+K +ESL+QRQWYF +G+RVRS LT I K+ + + + S
Sbjct: 321 YEGLVLAVLLFFSKMIESLSQRQWYFRCRIVGLRVRSLLTAAINKKQLRLNNSSRLIHSG 380
Query: 372 GIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVS 431
I+N VD RIG+F + H++W Q+ +AL IL+ ++G A F+AL I ++
Sbjct: 381 SEIMNYATVDAYRIGEFPYWFHQLWTTSFQLLIALGILFHSVGVA-TFSALAVIILTVLC 439
Query: 432 NTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSL 491
N P+A Q +F S +M ++D R+KA +E+L +M+VLKL +WE F K + +LR IE SL
Sbjct: 440 NAPIAKLQNKFQSELMTSQDERLKACNESLVNMKVLKLYAWESHFKKVIEKLRNIELKSL 499
Query: 492 KKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPE 551
K + A LFW+SP VS TF C L PL + V + +AT R++Q+P+ +P+
Sbjct: 500 KAVQMRKAYNAVLFWSSPVFVSAATFATCYFLDIPLRASNVFTFVATLRLVQDPVRMIPD 559
Query: 552 LISMIAQTKVSLYRIQEFIK--EDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKK 609
+I + Q KV+ RI F++ E + + S+ + AI I++ ++W+ E+ K
Sbjct: 560 VIGVTIQAKVAFSRIATFLEAPELQGGERRRKQRSEGNQNAIIIKSASFSWE--EKGSTK 617
Query: 610 PTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSW 669
P ++ +++ G KVAVCG VGSGKS+LL++ILGE P +SG I +G AYV Q++W
Sbjct: 618 PNLR-NVSLEVKFGEKVAVCGEVGSGKSTLLAAILGETPCVSGT-IDFYGTIAYVSQTAW 675
Query: 670 IQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729
IQTGTIR+NILFG M + Y E ++ +L++D+E+ DGD + +GERG+NLSGGQKQRI
Sbjct: 676 IQTGTIRDNILFGGVMDEHRYRETIQKSSLDKDLELLPDGDQTEIGERGVNLSGGQKQRI 735
Query: 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLV 789
QLARA+Y ++D+Y+ DDPFSAVDAHT + LF++ +M L+ K VL THQ++FL A D V
Sbjct: 736 QLARALYQDADIYLLDDPFSAVDAHTASSLFQEYVMDALAGKAVLLVTHQVDFLPAFDSV 795
Query: 790 LVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQV------NPPQEDKCLSRVPCQ 843
L+M DG+I ++ Y++L+A ++ + + AHR++ NP + K ++RV
Sbjct: 796 LLMSDGEITEADTYQELLA-RSRDFQDLVNAHRETAGSERVVAVENPTKPVKEINRVISS 854
Query: 844 MSQITEERFARPISCGEFSGRSQDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLF 903
S++ + +R I + E+ E G Y ++ + L QV F
Sbjct: 855 QSKVLKP--SRLI---------KQEEREKGDTGLRPYIQYMNQNKGYIFFFIASLAQVTF 903
Query: 904 QALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLF 963
Q+ N W+A D +VS +LI V++ + S ++ R+V + + +K++ LF
Sbjct: 904 AVGQILQNSWMAANVDNP-QVSTLKLILVYLLIGLCSVLCLMVRSVCVVIMCMKSSASLF 962
Query: 964 LNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMS 1023
++ S+FRAP+SF+DSTP RIL+R S+D S VD D+P+ L + + + + +++
Sbjct: 963 SQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDVPFGLIFVVASSVNTGCSLGVLA 1022
Query: 1024 QAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFN 1083
WQV + + ++ ++ Q YY TA+EL R+ GT ++ + +H +ES+AGA TIR F+
Sbjct: 1023 IVTWQVLFVSVPMVYLAFRLQKYYFQTAKELMRINGTTRSYVANHLAESVAGAITIRAFD 1082
Query: 1084 QENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAIDPS 1143
+E RF +S +LID + FH+ EWL R+ + ++ LP
Sbjct: 1083 EEERFFKKSLTLIDTNASPFFHSFAANEWLIQRLETVSAIVLASTAFCMILLPTGTFSSG 1142
Query: 1144 LAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWP 1203
G+A +YGL+LN+ + + N C + N +ISVER+ Q+T++ EAP VI+ +RP WP
Sbjct: 1143 FIGMALSYGLSLNMGLVYSVQNQCYLANWIISVERLNQYTHLTPEAPEVIEETRPPVNWP 1202
Query: 1204 SSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG 1263
+G++E+ +L ++Y P+VLKGI+CTF G KIG+VGRTGSGK+TLI ALFR+VEP G
Sbjct: 1203 VTGRVEISDLQIRYRRESPLVLKGISCTFEGGHKIGIVGRTGSGKTTLISALFRLVEPVG 1262
Query: 1264 GRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEV 1317
G+I++DGVDIS IG+ DLRSR IIPQDP LF GTVR NLDPL QHSD EIWEV
Sbjct: 1263 GKIVVDGVDISKIGVHDLRSRFGIIPQDPTLFNGTVRFNLDPLCQHSDAEIWEV 1316
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q7DM58|AB4C_ARATH ABC transporter C family member 4 OS=Arabidopsis thaliana GN=ABCC4 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 822 bits (2123), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 496/1305 (38%), Positives = 745/1305 (57%), Gaps = 97/1305 (7%)
Query: 85 SVSLVVTWALATVVALCSRYYRTLGEHKRWPLVLVLWWVVHLVIVLVC------------ 132
+V++ V + +VV + + W L+ L+W++H V LV
Sbjct: 102 TVAVTVLLSFCSVVLCVLAFTGKRRTQRPWNLIDPLFWLIHAVTHLVIAVLVLHQKRFAA 161
Query: 133 -----------VSVYLLTHLSSI-GLPHILPEA----KAVD---FVSLPLLVLLCFNA-- 171
+S ++LT L ++ G+ H L +A +A D F S PL L +
Sbjct: 162 LNHPLSLRIYWISSFVLTSLFAVTGIFHFLSDAATSLRAEDVASFFSFPLTAFLLIASVR 221
Query: 172 ------TYACCCARDPSDLDIPLLREEDDEFLCKNISTFASAGVLSKITFHWLNQLFQRG 225
T PSD + E+ D N+S +ASA V SK + W+N L +G
Sbjct: 222 GITGLVTAETNSPTKPSD---AVSVEKSD-----NVSLYASASVFSKTFWLWMNPLLSKG 273
Query: 226 RIQKLELLHIPPIPQSETANDASSLLEESLRKQKTDATS-LPQVIIHAVWKSLALNAAFA 284
L L +P + A + L E S K +++ + ++ WK + A A
Sbjct: 274 YKSPLTLEQVPTLSPEHKAERLALLFESSWPKPSENSSHPIRTTLLRCFWKEILFTAILA 333
Query: 285 GVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANR 344
V Y+GP LI +FV F SGK Y LVL + L AK VE LT Q+ F + +
Sbjct: 334 IVRLGVMYVGPVLIQSFVDFTSGKRSSPWQGYYLVL--ILLVAKFVEVLTTHQFNFDSQK 391
Query: 345 IGIRVRSALTVLIYKRSMAIKFAGPSS---GIIINMINVDVERIGDFFLYIHRIWLLPVQ 401
+G+ +RS L +YK+ + + + + G I+N + VD +++ D L +H IWL+P+Q
Sbjct: 392 LGMLIRSTLITALYKKGLKLTGSARQNHGVGQIVNYMAVDAQQLSDMMLQLHAIWLMPLQ 451
Query: 402 VFLALVILYKNLGAAPAFAALFST---IFVMVSNTPLANRQERFHSMIMEAKDARIKATS 458
V +ALV+LY +LGA+ A + T +F+++ R + +M +D+R+KAT+
Sbjct: 452 VTVALVLLYGSLGASVITAVIGLTGVFVFILLGT----QRNNGYQFSLMGNRDSRMKATN 507
Query: 459 ETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFG 518
E L MRV+K +WE F K++L+ R++E L K+LY+ + + W++P L+S +TF
Sbjct: 508 EMLNYMRVIKFQAWENHFNKRILKFRDMEFGWLSKFLYSIAGNIIVLWSTPVLISALTFA 567
Query: 519 VCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFI-KEDNQKK 577
+ L L +G V + F+ILQEPI P+ + ++Q +SL R+ ++ ++ +
Sbjct: 568 TALALGVKLDAGTVFTTTTIFKILQEPIRTFPQSMISLSQAMISLGRLDSYMMSKELSED 627
Query: 578 PITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGK 636
+ + A+++ G ++WD E+N +P L+D K+ KG A+ G+VGSGK
Sbjct: 628 AVERALGCDGNTAVEVRDGSFSWD-DEDN--EPA--LSDINFKVKKGELTAIVGTVGSGK 682
Query: 637 SSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEG 696
SSLL+S+LGE+ RISG ++V G YV Q+SWI+ GT+++NILFG M + Y +VL
Sbjct: 683 SSLLASVLGEMHRISGQ-VRVCGSTGYVAQTSWIENGTVQDNILFGLPMVREKYNKVLNV 741
Query: 697 CALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTG 756
C+L +D++M GD + +GERGINLSGGQKQRIQLARAVY DVY+ DD FSAVDAHTG
Sbjct: 742 CSLEKDLQMMEFGDKTEIGERGINLSGGQKQRIQLARAVYQECDVYLLDDVFSAVDAHTG 801
Query: 757 THLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIAD--QNSEL 814
+ +FK+C+ G L KTVL THQ++FL D +LVM+DGKI +SGKY++L++ EL
Sbjct: 802 SDIFKKCVRGALKGKTVLLVTHQVDFLHNVDCILVMRDGKIVESGKYDELVSSGLDFGEL 861
Query: 815 VRQMKAHRKSLDQVNPPQEDKCLSRVP-----------------CQMSQITEERFARPIS 857
V AH S++ V + ++ P +S + +E +
Sbjct: 862 V---AAHETSMELVEAGADSAAVATSPRTPTSPHASSPRTSMESPHLSDLNDEHIKSFLG 918
Query: 858 CG---EFSGRSQDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWI 914
+ S ++E+ E G+V VY + T Y + ++L + +Q M S+YW+
Sbjct: 919 SHIVEDGSKLIKEEERETGQVSLGVYKQYCTEAYGWWGIVLVLFFSLTWQGSLMASDYWL 978
Query: 915 AWATDEKRKVSREQLIGV--FIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFR 972
A+ T K +S + + + ++ ++ S + R+ + + +KTAQ F ++ S+
Sbjct: 979 AYETSAKNAISFDASVFILGYVIIALVSIVLVSIRSYYVTHLGLKTAQIFFRQILNSILH 1038
Query: 973 APISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPL 1032
AP+SFFD+TPS RIL+R STDQ+ VD IP+ L + LLSI I+ Q AW
Sbjct: 1039 APMSFFDTTPSGRILSRASTDQTNVDILIPFMLGLVVSMYTTLLSIFIVTCQYAWPT-AF 1097
Query: 1033 FLVILG-ISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLR 1091
F++ LG ++IWY+ YY+ ++REL RM KAPI+HHFSESIAG TIR F ++ F
Sbjct: 1098 FVIPLGWLNIWYRNYYLASSRELTRMDSITKAPIIHHFSESIAGVMTIRSFRKQELFRQE 1157
Query: 1092 SHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATY 1151
+ ++D + FHN G+ EWL R+ L+ ++ + + +V LP + I P GL+ +Y
Sbjct: 1158 NVKRVNDNLRMDFHNNGSNEWLGFRLELVGSWVLCISALFMVLLPSNVIRPENVGLSLSY 1217
Query: 1152 GLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELE 1211
GL+LN + + I+ C VENKM+SVERI QFT+IPSE+ K + P WP G + LE
Sbjct: 1218 GLSLNSVLFFAIYMSCFVENKMVSVERIKQFTDIPSESEWERKETLPPSNWPFHGNVHLE 1277
Query: 1212 NLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGV 1271
+L V+Y P P+VLKGIT G +K+GVVGRTGSGKSTLIQ LFR+VEPSGG+I+IDG+
Sbjct: 1278 DLKVRYRPNTPLVLKGITLDIKGGEKVGVVGRTGSGKSTLIQVLFRLVEPSGGKIIIDGI 1337
Query: 1272 DISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWE 1316
DIS +GL DLRSR IIPQ+P+LF+GTVR+N+DP EQ+SD+EIW+
Sbjct: 1338 DISTLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPTEQYSDEEIWK 1382
|
Involved in the regulation of stomatal aperture. May function as a high-capacity pump for folates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q8LGU1|AB8C_ARATH ABC transporter C family member 8 OS=Arabidopsis thaliana GN=ABCC8 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 803 bits (2073), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 498/1305 (38%), Positives = 728/1305 (55%), Gaps = 61/1305 (4%)
Query: 38 RRRDDGYILMARRAAGLVIVLCNVLIFILYMGFGFYEYWNFRIVSFKSVSLVVTWALATV 97
R R G+I +A V + C + FI ++G G N I V+ ++W V
Sbjct: 54 RGRKKGWIFVA------VAICCAITSFI-FLGVGL----NSLIHGGNDVT-EISWVACFV 101
Query: 98 VAL--CSRYYRTLGEHKRWPLVLV-LWWVVHLVIVLVCVSVYLLTHLSSIGLPHILPEAK 154
+ S L +W +LV +WWV ++ LV S LL + I + IL
Sbjct: 102 EGIIWVSLAVSLLVNGSKWVNILVSVWWVSFALLDLVAKSGILLQG-NGIRILDILTLPM 160
Query: 155 AVDFVSLPLLVLLCFNATYACCCARDPSDLDIPLLREEDDEFLCKNISTFASAGVLSKIT 214
++ + + L +A C SD PLL + K + A+AG S ++
Sbjct: 161 SLLLLLCSWMNLRSSSAAAQDCSVTGLSD---PLLTKNPR----KESARLATAGFFSILS 213
Query: 215 FHWLNQLFQRGRIQKLELLHIPPIPQSETANDASSLLEESLRKQKTDATSLPQ------V 268
F W+N L G + L IP + + A A ++ D +S +
Sbjct: 214 FSWMNPLLSLGFKKPLSPEDIPSVVPEDEAQLAYKKFSQAWDTLLGDESSTKERNLVFRA 273
Query: 269 IIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAK 328
++ +K A FA + T A P ++ FV + DH G + + K
Sbjct: 274 VVKVYFKENIFIAVFAFLRTFAVVSLPLMLYVFVDY--ANSDHRDLRNGFFNLACLVMLK 331
Query: 329 TVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAG---PSSGIIINMINVDVERI 385
VESLT R WYF + R G+R+RSAL V YK+ + + G SSG I+N I VD R+
Sbjct: 332 LVESLTMRHWYFASRRSGMRIRSALMVAAYKKQLKLSSLGRKRHSSGEIVNYIAVDAYRM 391
Query: 386 GDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSM 445
G+F + H W L +Q+ L+ +L+ +GA AF L + + N P A + +
Sbjct: 392 GEFLWWFHSGWSLSLQLLLSTAVLFGVVGAG-AFPGLILLLLCGLLNLPFAKMLQNCQTQ 450
Query: 446 IMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLF 505
M A+D R+++TSE L SM+V+KL SWE EF KK+ R+ E L K T + +FL+
Sbjct: 451 FMIAQDKRLRSTSEILNSMKVIKLQSWEDEFKKKIESCRDDEFTWLAKAQLTKAFGSFLY 510
Query: 506 WASPTLVSVITFGVCILLKT-PLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLY 564
W SPT+VS + F C LLK+ PL + + + LAT R++ EP+ +P+ IS I Q VS
Sbjct: 511 WMSPTIVSSVVFLGCALLKSAPLNASTIFTVLATLRVMSEPVKIIPDAISAIIQGNVSFQ 570
Query: 565 RIQEFIKEDNQKKPITEPTS-KASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKG 623
R+ F+ +D K E + AS A+DI+ G + W E K PT++ ++I G
Sbjct: 571 RLNNFLLDDELKMDEIERSGLDASGTAVDIQVGNFGW---EPETKIPTLR-NIHLEIKHG 626
Query: 624 SKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGK 683
KVAVCG VG+GKSSLL ++LGEIP++SG +KV G AYV Q+SWIQ+GTIR+NIL+GK
Sbjct: 627 QKVAVCGPVGAGKSSLLHAVLGEIPKVSGT-VKVFGSIAYVSQTSWIQSGTIRDNILYGK 685
Query: 684 DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYI 743
M Y ++ CAL++D+ + GDL+ +G+RGINLSGGQKQRIQLARAVY+++DVY+
Sbjct: 686 PMESRRYNAAIKACALDKDMNGFGHGDLTEIGQRGINLSGGQKQRIQLARAVYADADVYL 745
Query: 744 FDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKY 803
DDPFSAVDAHT LF +C+ L +KTV+ THQ+EFL D +LVM++G I QSGKY
Sbjct: 746 LDDPFSAVDAHTAGVLFHKCVEDSLKEKTVILVTHQVEFLSEVDQILVMEEGTITQSGKY 805
Query: 804 EDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARPISCGEFSG 863
E+L+ + + + AH ++ V P ++ L + + ++R R ++ E
Sbjct: 806 EELLM-MGTAFQQLVNAHNDAV-TVLPLASNESLG----DLRKEGKDREIRNMTVVEKIE 859
Query: 864 R------------SQDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSN 911
+Q+E+ E G V + +I + L+ +L QV F Q S
Sbjct: 860 EEIEKTDIPGVQLTQEEEKESGYVGMKPFLDYIGVSRGWCLLWSSVLGQVGFVVFQAAST 919
Query: 912 YWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVF 971
YW+A+A K++ LIGV+ +S S+ F+ RA+ A + +K ++ F +VF
Sbjct: 920 YWLAFAIGIP-KITNTMLIGVYSIISTLSAGFVYARAITTAHLGLKASKAFFSGFTNAVF 978
Query: 972 RAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFP 1031
+AP+ FFDSTP RIL R S+D + +D D+P+ + ++L + +++M+ WQV
Sbjct: 979 KAPMLFFDSTPVGRILTRASSDLNVLDYDVPFAFIFVVAPAVELTAALLIMTYVTWQVII 1038
Query: 1032 LFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLR 1091
+ L+ L + Q YY+ +AREL R+ GT KAP++++ +E+ G TIR F RF
Sbjct: 1039 IALLALAATKVVQDYYLASARELIRINGTTKAPVMNYAAETSLGVVTIRAFGTAERFFKN 1098
Query: 1092 SHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATY 1151
+L+D + + F + MEW+ LRI L N F ++L+ +P+ I P L GL+ +Y
Sbjct: 1099 YLNLVDADAVLFFLSNAAMEWVILRIETLQNVTLFTCALLLILIPKGYIAPGLVGLSLSY 1158
Query: 1152 GLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELE 1211
L L Q ++ C + N +ISVERI Q+ NIP E P +I + RP WPS+G I L+
Sbjct: 1159 ALTLTQTQVFLTRWYCTLSNSIISVERIKQYMNIPEEPPAIIDDKRPPSSWPSNGTIHLQ 1218
Query: 1212 NLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGV 1271
L ++Y P P+VLKGI+CTF ++GVVGRTGSGKSTLI ALFR+VEP+ G ILIDG+
Sbjct: 1219 ELKIRYRPNAPLVLKGISCTFREGTRVGVVGRTGSGKSTLISALFRLVEPASGCILIDGI 1278
Query: 1272 DISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWE 1316
DIS IGL+DLR +LSIIPQ+P LF+G +RTNLDPL +SD EIW+
Sbjct: 1279 DISKIGLKDLRMKLSIIPQEPTLFRGCIRTNLDPLGVYSDDEIWK 1323
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1333 | ||||||
| 255547892 | 1464 | multidrug resistance-associated protein | 0.969 | 0.882 | 0.730 | 0.0 | |
| 224102345 | 1361 | multidrug resistance protein ABC transpo | 0.901 | 0.883 | 0.742 | 0.0 | |
| 225425888 | 1462 | PREDICTED: ABC transporter C family memb | 0.972 | 0.887 | 0.700 | 0.0 | |
| 449435456 | 1444 | PREDICTED: ABC transporter C family memb | 0.945 | 0.872 | 0.691 | 0.0 | |
| 449525006 | 1444 | PREDICTED: LOW QUALITY PROTEIN: ABC tran | 0.945 | 0.872 | 0.690 | 0.0 | |
| 356528244 | 1454 | PREDICTED: ABC transporter C family memb | 0.972 | 0.892 | 0.658 | 0.0 | |
| 356510881 | 1452 | PREDICTED: ABC transporter C family memb | 0.975 | 0.895 | 0.652 | 0.0 | |
| 297738346 | 1363 | unnamed protein product [Vitis vinifera] | 0.908 | 0.888 | 0.643 | 0.0 | |
| 357131484 | 1502 | PREDICTED: ABC transporter C family memb | 0.966 | 0.858 | 0.578 | 0.0 | |
| 56784517 | 1487 | putative MRP-like ABC transporter [Oryza | 0.960 | 0.861 | 0.585 | 0.0 |
| >gi|255547892|ref|XP_002515003.1| multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis] gi|223546054|gb|EEF47557.1| multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1901 bits (4925), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 954/1306 (73%), Positives = 1098/1306 (84%), Gaps = 14/1306 (1%)
Query: 20 NVAFFIGLFTRLWIEILKRRRDDGYILMARRAA------GLVIVLCNVLIFILYMGFGFY 73
NVAF++ L L ++ILK RR + +A + VLCNV++ I +GFGF
Sbjct: 27 NVAFWVLLLAWLLMDILKGRRGGSDLDKENKAVEGSKLFTRITVLCNVILLIFNLGFGFR 86
Query: 74 EYWNFRIVSFKSVSLVVTWALATVVALCSRYYRTLGEHKRWPLVLVLWWVVHLVIVLVCV 133
EY + R ++ KS+ TW LATVV S+ R + E +WPLVL+LWWV ++ V
Sbjct: 87 EYLDRRDINCKSI----TWILATVVVFYSQQ-RNVREGNKWPLVLILWWVFSCIMYSASV 141
Query: 134 SVYLLTHLSSIGLPHILPEAKAVDFVSLPLLVLLCFNATYACCCARDPSDLDIPLLREED 193
S+Y +TH SSI LP+ LP+ V+F+S P +LLC A C R + L PLL+EE
Sbjct: 142 SIYFITHFSSIQLPNPLPKPNIVEFISFPFSILLCCLALRFSCSTRIGTGLKQPLLQEER 201
Query: 194 DEFLCKNISTFASAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQSETANDASSLLEE 253
L K+ S+F +AG+ S+ITF WLN LF+RGRIQKLEL +IP +PQSETA +SSLLEE
Sbjct: 202 KRVL-KDSSSFTTAGIWSQITFQWLNPLFRRGRIQKLELSNIPLVPQSETAKCSSSLLEE 260
Query: 254 SLRKQKTDATSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSS 313
SL K+K ++++LP+ I +AVWKSLA+N FAGVNTIASY+GP LIT+FV+FLS +H+ S
Sbjct: 261 SLGKRKNESSNLPKAIAYAVWKSLAINGVFAGVNTIASYMGPLLITSFVNFLSEEHEDSG 320
Query: 314 YHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAGPSSGI 373
Y YGL+LA +F +KT+ESLT+RQWYFGA RIGIRVRSAL V+IYK+S+++KF+GPS+G
Sbjct: 321 YLYGLILAFIFFMSKTIESLTERQWYFGAQRIGIRVRSALMVMIYKKSLSVKFSGPSNGT 380
Query: 374 IINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNT 433
IINMINVDVERIGDF IHR+WLLP+QVFLALVILYKNLGAAP+ AAL STIF+MVSNT
Sbjct: 381 IINMINVDVERIGDFCWNIHRVWLLPLQVFLALVILYKNLGAAPSIAALSSTIFIMVSNT 440
Query: 434 PLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKK 493
PLAN+QE HS IMEAKD+RIKATSETLKSMRVLKL SWE EFL KLL+LREIER+ L+
Sbjct: 441 PLANKQEELHSDIMEAKDSRIKATSETLKSMRVLKLYSWESEFLTKLLQLREIERNKLRS 500
Query: 494 YLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELI 553
YLYT SAIAFLFWASPTLVSVITFGVCILLK PLT+G VLSALATFRILQEPIYNLPELI
Sbjct: 501 YLYTSSAIAFLFWASPTLVSVITFGVCILLKIPLTTGTVLSALATFRILQEPIYNLPELI 560
Query: 554 SMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIK 613
SMIAQTKVS+YRIQEFIK++ Q+K I+ S+ASD+AI+IE GEYAW+ + + +KP IK
Sbjct: 561 SMIAQTKVSVYRIQEFIKDEGQRKQISYHNSQASDIAIEIETGEYAWERSDRDIRKPIIK 620
Query: 614 LTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTG 673
+T+K+KIMKG KVAVCGSVGSGKSSLL SILGEIPRISGA IKV+GKKAYVPQS+WIQTG
Sbjct: 621 ITEKLKIMKGYKVAVCGSVGSGKSSLLCSILGEIPRISGAGIKVYGKKAYVPQSAWIQTG 680
Query: 674 TIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733
++EN+LFGKDM ++FYE+V+EGCALNQDI +W GDL+V+GERGINLSGGQKQRIQLAR
Sbjct: 681 IVKENVLFGKDMDKAFYEDVMEGCALNQDIRIWTHGDLTVIGERGINLSGGQKQRIQLAR 740
Query: 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMK 793
AVYSNSDVYI DDPFSAVDAHTGTHLFK+CL LLSQKTV+Y THQLEF+DAADLVLVMK
Sbjct: 741 AVYSNSDVYILDDPFSAVDAHTGTHLFKKCLAQLLSQKTVIYATHQLEFVDAADLVLVMK 800
Query: 794 DGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQ--ITEER 851
DG I QSGKYEDLIAD SELVRQM AH+KSL+QVNPP ED L+ V CQ++Q +TEE
Sbjct: 801 DGIIVQSGKYEDLIADPTSELVRQMAAHKKSLNQVNPPPEDNALTSVACQLNQNEVTEEE 860
Query: 852 FARPISCGEFSGRSQDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSN 911
PIS S +Q+E+TE GRVKW+VYS F+T YKGALVPVILLCQV FQ LQMGSN
Sbjct: 861 LEEPISNSRLSEGTQEEETETGRVKWSVYSTFVTSAYKGALVPVILLCQVFFQGLQMGSN 920
Query: 912 YWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVF 971
YWIAWA++++ K+SREQLIG+F+ LSGGSS FILGRAVLLA+IA++TAQRLFL MI S+F
Sbjct: 921 YWIAWASEDRHKISREQLIGIFVLLSGGSSIFILGRAVLLASIAVETAQRLFLGMIKSIF 980
Query: 972 RAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFP 1031
RAPISFFDSTPSSRILNR S DQSTVDTDIPYRLAGLAFALIQLLSIIILMSQ AWQ+F
Sbjct: 981 RAPISFFDSTPSSRILNRSSMDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQVAWQIFI 1040
Query: 1032 LFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLR 1091
LFLVILGIS+WYQAYYITTARELARMVG RKAPILHHFSESIAGA TI CFNQ++RFL+R
Sbjct: 1041 LFLVILGISLWYQAYYITTARELARMVGIRKAPILHHFSESIAGAATIHCFNQQDRFLMR 1100
Query: 1092 SHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATY 1151
+ SLIDDYS + FHN GTMEWLCLRIN LFN FFLVLIILV LPRSAIDPSLAGLAATY
Sbjct: 1101 NLSLIDDYSRIVFHNTGTMEWLCLRINFLFNLVFFLVLIILVNLPRSAIDPSLAGLAATY 1160
Query: 1152 GLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELE 1211
GLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVI++SRP+P+WP G+IEL
Sbjct: 1161 GLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIEDSRPNPKWPVDGRIELV 1220
Query: 1212 NLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGV 1271
NL VQY+P+LPMVLK ITC FPG KKIGVVGRTGSGKSTLIQALFRV+EPS G+ILIDG
Sbjct: 1221 NLCVQYSPSLPMVLKSITCIFPGGKKIGVVGRTGSGKSTLIQALFRVIEPSEGQILIDGQ 1280
Query: 1272 DISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEV 1317
DIS IGL+DLRS L IIPQDP LFQGTVRTNLDPL++HSD EIWEV
Sbjct: 1281 DISKIGLRDLRSGLGIIPQDPTLFQGTVRTNLDPLQEHSDHEIWEV 1326
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224102345|ref|XP_002312645.1| multidrug resistance protein ABC transporter family [Populus trichocarpa] gi|222852465|gb|EEE90012.1| multidrug resistance protein ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1864 bits (4829), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 914/1231 (74%), Positives = 1031/1231 (83%), Gaps = 29/1231 (2%)
Query: 115 PLVLVLWWVVHLVIVLVCVSVYLLTHLSSIGLPHILPEAKAVDFVSLPLLVLLCFNATYA 174
PLV+VLWWV + + + VS++L+T SSI LP+ PEA DF SLPLLVLLCFNA
Sbjct: 1 PLVIVLWWVFYCIFDSLSVSIHLITRFSSIELPYPWPEANIADFASLPLLVLLCFNAVTF 60
Query: 175 CCCARDPSDLDIPLLREEDDEFLCKNISTFASAGVLSKITFHWLNQLFQRGRIQKLELLH 234
C + DL+IPLL+E+ E L K+ + + SAG+ SK+TF WLN LF GRI+KLEL H
Sbjct: 61 SCSTKTHDDLEIPLLQEKR-ESLFKDSTCYRSAGIWSKLTFKWLNPLFSSGRIEKLELSH 119
Query: 235 IPPIPQSETANDASSLLEESLRKQKTDATSLPQVIIHAVWKSLALNAAFAGVNTIASYIG 294
+PP+P SETA ASSLLE+S K K + +LP+ I +AVWKSL +N FAGVNTIASY G
Sbjct: 120 VPPVPASETAKYASSLLEDSFGKNKKETLNLPKAIAYAVWKSLTINGVFAGVNTIASYTG 179
Query: 295 PFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALT 354
P LITNFV+FLS HD S + GLVLA VF F+KTVES+TQRQWYFG RIGIRVR+AL+
Sbjct: 180 PLLITNFVNFLSENHDDSGHIPGLVLAFVFFFSKTVESVTQRQWYFGTQRIGIRVRAALS 239
Query: 355 VLIYKRSMAIKFAGPSSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLG 414
VL+YK+S+++KFAG S+G IINMINVDVERIGDF IH +WLLP QVFLALVILY NLG
Sbjct: 240 VLVYKKSLSVKFAGSSNGKIINMINVDVERIGDFCWNIHGVWLLPFQVFLALVILYINLG 299
Query: 415 AAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQ 474
AAP+ AAL STI VMVSNTPLA++QER HS IMEAKD+RIKATSETLKSMRVLKL SWE
Sbjct: 300 AAPSIAALSSTILVMVSNTPLASKQERLHSRIMEAKDSRIKATSETLKSMRVLKLYSWEP 359
Query: 475 EFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLS 534
FLKKLL+LRE ER+ L+KYLYT SAIAFLFWASPTLVSV+TFGVCILLKTPLT+G VLS
Sbjct: 360 TFLKKLLQLRETERNWLRKYLYTSSAIAFLFWASPTLVSVVTFGVCILLKTPLTTGTVLS 419
Query: 535 ALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIE 594
ALATFRILQEPIYNLPELISMIAQTKVS+ RIQ+F+ ED+QKK I S+ASD+ I+++
Sbjct: 420 ALATFRILQEPIYNLPELISMIAQTKVSIDRIQDFLSEDDQKKQIPYQASQASDITIEMK 479
Query: 595 AGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA 654
GEYAW+ ++N KPTIK+T MKIMKG KVAVCGSVGSGKSSLL SILGEIP ISGA
Sbjct: 480 CGEYAWETIDQNSTKPTIKITKNMKIMKGYKVAVCGSVGSGKSSLLCSILGEIPMISGAG 539
Query: 655 IKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVV 714
+KVHG KAYVPQS+WIQTGT+R+N+LFGKDM + YE+VLEGCALNQDIE+WADGDL+VV
Sbjct: 540 VKVHGTKAYVPQSAWIQTGTVRDNVLFGKDMSKEIYEDVLEGCALNQDIEIWADGDLTVV 599
Query: 715 GERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK------------- 761
GERG+NLSGGQKQRIQLARAVYSNSDVYI DDPFSAVDAHTGTHLFK
Sbjct: 600 GERGMNLSGGQKQRIQLARAVYSNSDVYILDDPFSAVDAHTGTHLFKARIFLIFFCFLFI 659
Query: 762 -------------QCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808
+CLM LLSQKTV+Y THQLEFLDAADLVLV KDG I QSGKYEDLIA
Sbjct: 660 SRATLLPCRYSHLKCLMQLLSQKTVIYATHQLEFLDAADLVLVTKDGVIVQSGKYEDLIA 719
Query: 809 DQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQ--ITEERFARPISCGEFSGRSQ 866
D ELVRQM AHR+SL+QVNPPQED + Q++Q +TEE+F P FS ++Q
Sbjct: 720 DPTGELVRQMAAHRRSLNQVNPPQEDNPFTGGSSQLNQNEVTEEKFEGPTGTDRFSRKTQ 779
Query: 867 DEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSR 926
+E +E GRVKW+VYS FIT YKGALVP+ILLCQVLFQ LQMGSNYWIAWAT++ V+R
Sbjct: 780 EEVSETGRVKWSVYSTFITSAYKGALVPIILLCQVLFQGLQMGSNYWIAWATEKSHNVTR 839
Query: 927 EQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRI 986
E+LIG+FI LSGGSS FILGRAVLLATIA++TAQRLF MI+S+F+A ISFFD+TPSSRI
Sbjct: 840 EKLIGIFILLSGGSSIFILGRAVLLATIAVETAQRLFFGMISSIFQATISFFDATPSSRI 899
Query: 987 LNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAY 1046
L+R STDQSTVDTDIPYRLAGLAFALIQLL I+ILMSQ AWQVFP+FLVILGISIWYQAY
Sbjct: 900 LSRSSTDQSTVDTDIPYRLAGLAFALIQLLCIVILMSQVAWQVFPIFLVILGISIWYQAY 959
Query: 1047 YITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHN 1106
YITTARELARMVG RKAPILHHFSESI GA TIRCFNQE RFL+RS SLIDDYS + FHN
Sbjct: 960 YITTARELARMVGIRKAPILHHFSESITGAATIRCFNQEERFLMRSLSLIDDYSRIVFHN 1019
Query: 1107 CGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNL 1166
GTMEWLC+RIN LFN FFLVLIILV LP+SAIDPSLAGLAATYGLNLNVLQAWVIWNL
Sbjct: 1020 SGTMEWLCIRINFLFNLGFFLVLIILVNLPKSAIDPSLAGLAATYGLNLNVLQAWVIWNL 1079
Query: 1167 CNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLK 1226
CNVENKMISVERILQFTNIPSEAPLVI++ RP PEWP G++EL L VQY+P+LP VLK
Sbjct: 1080 CNVENKMISVERILQFTNIPSEAPLVIEDCRPKPEWPVDGRVELIGLDVQYSPSLPKVLK 1139
Query: 1227 GITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286
GITCTFPG KKIGVVGRTGSGKSTLIQALFRV+EPSGG+ILIDG+DIS IGL+DLRS+L
Sbjct: 1140 GITCTFPGGKKIGVVGRTGSGKSTLIQALFRVIEPSGGQILIDGLDISKIGLRDLRSKLG 1199
Query: 1287 IIPQDPMLFQGTVRTNLDPLEQHSDQEIWEV 1317
IIPQDP LF+GTVRTNLDPLE+HSDQEIWEV
Sbjct: 1200 IIPQDPTLFRGTVRTNLDPLEKHSDQEIWEV 1230
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225425888|ref|XP_002266601.1| PREDICTED: ABC transporter C family member 3-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1842 bits (4770), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 924/1319 (70%), Positives = 1069/1319 (81%), Gaps = 22/1319 (1%)
Query: 13 DKVLESVNVAFFIGLFTRLWIEILKRRRDDGY-------ILMARRAAGLVIVLCNVLIFI 65
D L +NVAFF L T + + +L++RRD G + +V VL N +I +
Sbjct: 15 DSSLGLINVAFFWLLLTWVLVGVLRKRRDGGGADSENEPTMRKSTVFTVVSVLSNAIICV 74
Query: 66 LYMGFGFYEYWNFRIVSFKSVSLVVTWALATVVALCSRYYRTLGEHKRWPLVLVLWWVVH 125
++GF YE+W+ ++ + +TW LA ++ + T E+KRWPL+L WWV
Sbjct: 75 SHLGFCLYEFWSLETINLVHIFSAMTWVLAAIITVSCFRNSTTRENKRWPLILTSWWVFS 134
Query: 126 LVIVLVCVSVYLLTHLSSIGLPHI----LPEAKAVDFVSL-PLLVLLCFNATYACCCARD 180
++ + VSVYL+T L + LP +P+A DF SL PL +LLCFN C +
Sbjct: 135 SILSSLSVSVYLVTRLKILTLPDFWPDFVPQATIDDFASLIPLWILLCFNV-LPFNCGKK 193
Query: 181 PSDLDIPLLREEDDEFLCKNISTFASAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQ 240
SDL+ PLL E L + ++SAG+ SK+TF WLN LF++GR+QK++L HIPP+PQ
Sbjct: 194 RSDLEHPLLESEGGN-LSHGVDPYSSAGIWSKLTFLWLNPLFRKGRVQKIQLHHIPPVPQ 252
Query: 241 SETANDASSLLEESLRKQKTDATSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITN 300
SE A ASSLLEE+L KQKT T + + +VW+SLA+NA FAG NTIASY+GPFLIT+
Sbjct: 253 SEKAETASSLLEETLTKQKTSVT---KALFCSVWRSLAINAVFAGANTIASYMGPFLITH 309
Query: 301 FVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKR 360
FV+FLSGK D SSY+YGLVLA +F AKT+ESL+QRQWY G RIGIRVR+AL VL+YK+
Sbjct: 310 FVNFLSGKGDDSSYYYGLVLALIFFMAKTLESLSQRQWYLGGQRIGIRVRAALMVLVYKK 369
Query: 361 SMAIKFAGPSSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFA 420
S++IK+AG +SG IIN+INVDV+RIGDF L IH +WLLPVQV LALVILY+NLGAAP+
Sbjct: 370 SLSIKYAGSNSGKIINLINVDVDRIGDFCLCIHGVWLLPVQVGLALVILYRNLGAAPSMT 429
Query: 421 ALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKL 480
ALF+T+ VMV NTPLA RQER HS IMEAKD+RIKATSETLKSMRVLKL SWE FL K+
Sbjct: 430 ALFATVLVMVGNTPLAKRQERLHSKIMEAKDSRIKATSETLKSMRVLKLHSWEDTFLNKI 489
Query: 481 LRLREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFR 540
LRE ER LK+YLYTCSA+AFLFW SPTLVSVITF VCI+LKTPLT+G VLSALATFR
Sbjct: 490 KELRETERHWLKRYLYTCSAVAFLFWTSPTLVSVITFAVCIVLKTPLTTGRVLSALATFR 549
Query: 541 ILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAW 600
ILQEPIYNLPELISMIAQTKVS+ RIQ FI+E++QKK T PTS++S+V+IDIE GEYAW
Sbjct: 550 ILQEPIYNLPELISMIAQTKVSMNRIQLFIQEEDQKKLATYPTSESSEVSIDIEVGEYAW 609
Query: 601 DAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK 660
+EN K PTIK+ +M IMKG KVAVCGSVGSGKSSLL SILGEIPRISG KV+G
Sbjct: 610 TC-DENLK-PTIKIDQRMIIMKGYKVAVCGSVGSGKSSLLCSILGEIPRISGTGSKVYGS 667
Query: 661 KAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720
KAYVPQS+WIQTGTIR+N+LFGK++ ++FYE+VLE CAL++DI++W +GDLSVVGERG+N
Sbjct: 668 KAYVPQSAWIQTGTIRDNVLFGKEINKAFYEDVLEACALDRDIQLWYNGDLSVVGERGMN 727
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQL 780
LSGGQKQRIQLARA+YS SDVY DDPFSAVDAHTG HLF++CLM +LSQKTV+Y THQL
Sbjct: 728 LSGGQKQRIQLARAIYSESDVYFLDDPFSAVDAHTGAHLFQKCLMQILSQKTVIYVTHQL 787
Query: 781 EFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRV 840
EFLDA+DLVLVMKDG I QSGKYEDLIAD NSELVRQM AH KSLDQVNP QE+ C +
Sbjct: 788 EFLDASDLVLVMKDGIIVQSGKYEDLIADPNSELVRQMTAHNKSLDQVNPSQEN-CFTNK 846
Query: 841 PCQMSQIT--EERFARPISCGEFSGRSQDEDTELGRVKWTVYSAFITLVYKGALVPVILL 898
P Q +I EE PIS G+ E+TE GRVKW VYS FIT YKG LVPVILL
Sbjct: 847 PPQKKKIDLIEENSHDPISNGKLLDGIHKEETESGRVKWHVYSTFITSAYKGGLVPVILL 906
Query: 899 CQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKT 958
CQVLFQ LQMGSNYWIAWAT+E+ +VSREQLIGVF LSGGSS FILGRAVLL+TIAI+T
Sbjct: 907 CQVLFQGLQMGSNYWIAWATEEEGRVSREQLIGVFSLLSGGSSIFILGRAVLLSTIAIET 966
Query: 959 AQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSI 1018
A+ LF MI +VFRAP+SFFDSTPSS+ILNR STDQSTVDTDIPYRLAGLAFALIQLLSI
Sbjct: 967 ARHLFSEMIKAVFRAPVSFFDSTPSSQILNRSSTDQSTVDTDIPYRLAGLAFALIQLLSI 1026
Query: 1019 IILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATT 1078
I+LMSQ AWQVF LF+ IL ISIWYQAYYI TARELARMVG RKAPILHHFSES+AGA T
Sbjct: 1027 IVLMSQVAWQVFLLFVSILAISIWYQAYYIATARELARMVGVRKAPILHHFSESVAGAAT 1086
Query: 1079 IRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRS 1138
IRCF+Q++RFL R+ SLIDDYS V FHN TMEWLC+RIN LFN FFLVL+ILV+LPRS
Sbjct: 1087 IRCFSQDDRFLRRNLSLIDDYSRVAFHNTATMEWLCVRINFLFNLVFFLVLVILVSLPRS 1146
Query: 1139 AIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRP 1198
AI PSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFT IPSEAPLVI+N RP
Sbjct: 1147 AISPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTKIPSEAPLVIENCRP 1206
Query: 1199 SPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRV 1258
S EWPS+G+I+L+NL V+Y PTLPMVLKGITCTFPGE+KIGVVGRTGSGKSTLIQALFRV
Sbjct: 1207 SLEWPSNGRIDLDNLHVRYTPTLPMVLKGITCTFPGERKIGVVGRTGSGKSTLIQALFRV 1266
Query: 1259 VEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEV 1317
VEPS G+ILIDGVDIS +GL+DLRSRLSIIPQDP LFQGT+RTNLDPL +HSDQEIWEV
Sbjct: 1267 VEPSEGQILIDGVDISKMGLKDLRSRLSIIPQDPTLFQGTMRTNLDPLGEHSDQEIWEV 1325
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449435456|ref|XP_004135511.1| PREDICTED: ABC transporter C family member 3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1762 bits (4564), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 875/1265 (69%), Positives = 1033/1265 (81%), Gaps = 5/1265 (0%)
Query: 55 VIVLCNVLIFILYMGFGFYEYWNFRIVSFKSVSLVVTWALATVVALCSRYYRTLGEHKRW 114
+ V CNV+I L GF +EYWN RIV ++SV +TW LA +A R L E K W
Sbjct: 33 ITVFCNVVISFLLSGFVAFEYWNHRIVCWESVISALTWILAAAIAFYWRKVMYL-EGKNW 91
Query: 115 PLVLVLWWVVHLVIVLVCVSVYLLTHLSSIGLPHILPEAKAVDFVSLPLLVLLCFNATYA 174
PLVL LWW L +YLLT L S+ PH LP+A VDFVS L ++C A
Sbjct: 92 PLVLTLWWGFSCFYGLCASIIYLLTRLKSMEFPHFLPKATIVDFVSFTLSFIICCTALTV 151
Query: 175 CCCARDPSDLDIPLLREEDDEFLCKNISTFASAGVLSKITFHWLNQLFQRGRIQKLELLH 234
R +DL+ LL ++D++ ++ F S G+ S+ITF WLN LF+RGR QKLEL+H
Sbjct: 152 NYSKRH-NDLEKSLL-QKDNDCSSEDGGGFISPGLWSRITFQWLNPLFKRGRNQKLELVH 209
Query: 235 IPPIPQSETANDASSLLEESLRKQKTDATSLPQVIIHAVWKSLALNAAFAGVNTIASYIG 294
IP +PQSETA ASSLLEESL+++K + +SLP I A WKSL L A FAG NT+AS++G
Sbjct: 210 IPCVPQSETAEYASSLLEESLQRKKVECSSLPNAIFLATWKSLVLTAIFAGFNTLASFMG 269
Query: 295 PFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALT 354
P LIT+FV++L GK D SS GL+LA F FAKT+ESL QRQWYFG +R GI+VR+ALT
Sbjct: 270 PLLITHFVNYLLGKSDDSSNRDGLILAFFFFFAKTMESLAQRQWYFGTHRAGIQVRAALT 329
Query: 355 VLIYKRSMAIKFAGPSSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLG 414
V+IYK+S++I AGPS+G IIN+INVDVERIGDF YIH+IWLLPVQ+ LALVILY+NLG
Sbjct: 330 VMIYKKSISINAAGPSNGKIINLINVDVERIGDFSWYIHKIWLLPVQIALALVILYRNLG 389
Query: 415 AAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQ 474
AAP+ AL +TIF+MVSNTPLAN QE HS IM+AKD+RIK TSETLK+MRVLKL SWEQ
Sbjct: 390 AAPSITALLATIFIMVSNTPLANVQESLHSKIMDAKDSRIKLTSETLKNMRVLKLHSWEQ 449
Query: 475 EFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLS 534
FLKK+L+LRE+ER LK+YLYTCS IAFLFW SPTLVSV TFG C+++K PLT+G VLS
Sbjct: 450 TFLKKVLKLREVERSWLKRYLYTCSVIAFLFWVSPTLVSVFTFGACVMMKVPLTAGTVLS 509
Query: 535 ALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIE 594
A+ATFRILQEPIYNLPELISMIAQTKVSL RIQEFI+E++Q+K I P S SDVAI++E
Sbjct: 510 AIATFRILQEPIYNLPELISMIAQTKVSLDRIQEFIREEDQRKRIYYPPSNPSDVAIEME 569
Query: 595 AGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA 654
GEY+W+A ++NFKKPTIK+ +KM+I KG KVAVCGSVGSGKSSLL SILGEIP++SG
Sbjct: 570 VGEYSWEASDQNFKKPTIKVAEKMQIPKGYKVAVCGSVGSGKSSLLCSILGEIPQVSGTQ 629
Query: 655 IKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVV 714
+KVHG KAYVPQS+WIQ+GT+REN+LFGK++ + FYE+VLE CALNQDI++W DGD S++
Sbjct: 630 MKVHGSKAYVPQSAWIQSGTVRENVLFGKEIDKHFYEDVLEACALNQDIKLWLDGDCSLL 689
Query: 715 GERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVL 774
GERG+NLSGGQKQRIQLARAVYS++DVY DDPFSAVDA TGTHLFK+CL+ LLS KTV+
Sbjct: 690 GERGMNLSGGQKQRIQLARAVYSDADVYFLDDPFSAVDACTGTHLFKRCLLQLLSGKTVV 749
Query: 775 YTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQED 834
Y TH LEF++AADLVLVMK+G+I QSGKY +L++D N EL R + AHR+ L+ V P +ED
Sbjct: 750 YATHHLEFIEAADLVLVMKNGQIVQSGKYGELMSDSNGELARHIAAHRRFLNGVKPFKED 809
Query: 835 KCLSRVPCQMSQIT--EERFARPISCGEFSGRSQDEDTELGRVKWTVYSAFITLVYKGAL 892
K + P + QI +E + + G S R+Q+E+ + GRVKW+VYS FIT YKGAL
Sbjct: 810 KPHHKRPRKTHQIEVLDENSSLSLGNGSQSVRTQEEEIQTGRVKWSVYSTFITSAYKGAL 869
Query: 893 VPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLA 952
VP+ILLCQVLFQ LQMGSNYWI+WAT+E+ KVSREQL+G+FI +SGGSS FILGRAVL+A
Sbjct: 870 VPIILLCQVLFQILQMGSNYWISWATEEEGKVSREQLLGIFILMSGGSSIFILGRAVLMA 929
Query: 953 TIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFAL 1012
TIAI+TAQR+FL M+TS+F APISFFD+ PSS+ILNR STDQST+DTDIPYRL GLAFAL
Sbjct: 930 TIAIETAQRMFLGMVTSIFAAPISFFDAKPSSQILNRSSTDQSTLDTDIPYRLGGLAFAL 989
Query: 1013 IQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSES 1072
IQLLSIIILMS+ AWQVFPLFLV+L ISIWYQ YYI+TARELARMVG RKAPILHHFSE+
Sbjct: 990 IQLLSIIILMSKVAWQVFPLFLVVLAISIWYQGYYISTARELARMVGIRKAPILHHFSET 1049
Query: 1073 IAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIIL 1132
+ GAT IRCFNQE+RFL + +L+DDYS V FHN +MEWLCLRIN LF+ FFL LIIL
Sbjct: 1050 VVGATIIRCFNQEDRFLKKILNLVDDYSRVVFHNSTSMEWLCLRINFLFDVVFFLALIIL 1109
Query: 1133 VTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLV 1192
VTLPR+AIDPSLAGLAATYGLN+NVLQAWVIWNLCNVENKMISVERILQFTNI SEAP +
Sbjct: 1110 VTLPRTAIDPSLAGLAATYGLNMNVLQAWVIWNLCNVENKMISVERILQFTNIASEAPPI 1169
Query: 1193 IKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLI 1252
I++ RP PEWP GKIELENL VQY P LP+VL+GITCTFP +KKIGVVGRTGSGKSTLI
Sbjct: 1170 IEDCRPMPEWPKEGKIELENLQVQYRPDLPLVLRGITCTFPEKKKIGVVGRTGSGKSTLI 1229
Query: 1253 QALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQ 1312
Q LFR+VEPS GRILIDGVDI IGL DLRS+L IIPQDP LFQGT+RTNLDPL+QHSDQ
Sbjct: 1230 QTLFRLVEPSAGRILIDGVDICKIGLHDLRSKLGIIPQDPTLFQGTMRTNLDPLQQHSDQ 1289
Query: 1313 EIWEV 1317
EIWEV
Sbjct: 1290 EIWEV 1294
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449525006|ref|XP_004169512.1| PREDICTED: LOW QUALITY PROTEIN: ABC transporter C family member 3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1762 bits (4564), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 874/1265 (69%), Positives = 1033/1265 (81%), Gaps = 5/1265 (0%)
Query: 55 VIVLCNVLIFILYMGFGFYEYWNFRIVSFKSVSLVVTWALATVVALCSRYYRTLGEHKRW 114
+ V CNV+I L GF +EYWN RIV ++SV +TW LA +A R L E K W
Sbjct: 33 ITVFCNVVISFLLSGFVAFEYWNHRIVCWESVISALTWILAAAIAFYWRKVMYL-EGKNW 91
Query: 115 PLVLVLWWVVHLVIVLVCVSVYLLTHLSSIGLPHILPEAKAVDFVSLPLLVLLCFNATYA 174
PLVL LWW L +YLLT L S+ PH LP+A VDFVS L ++C A
Sbjct: 92 PLVLTLWWGFSCFYGLCASIIYLLTRLKSMEFPHFLPKATIVDFVSFTLSFIICCTALTV 151
Query: 175 CCCARDPSDLDIPLLREEDDEFLCKNISTFASAGVLSKITFHWLNQLFQRGRIQKLELLH 234
R +DL+ LL ++D++ ++ F S G+ S+ITF WLN LF+RGR QKLEL+H
Sbjct: 152 NYSKRH-NDLEKSLL-QKDNDCSSEDGGGFISPGLWSRITFQWLNPLFKRGRNQKLELVH 209
Query: 235 IPPIPQSETANDASSLLEESLRKQKTDATSLPQVIIHAVWKSLALNAAFAGVNTIASYIG 294
IP +PQSETA ASSLLEESL+++K + +SLP I A WKSL L A FAG NT+AS++G
Sbjct: 210 IPCVPQSETAEYASSLLEESLQRKKVECSSLPNAIXLATWKSLVLTAIFAGFNTLASFMG 269
Query: 295 PFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALT 354
P LIT+FV++L GK D SS GL+LA F FAKT+ESL QRQWYFG +R GI+VR+ALT
Sbjct: 270 PLLITHFVNYLLGKSDDSSNRDGLILAFFFFFAKTMESLAQRQWYFGTHRAGIQVRAALT 329
Query: 355 VLIYKRSMAIKFAGPSSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLG 414
V+IYK+S++I AGPS+G IIN+INVDVERIGDF YIH+IWLLPVQ+ LALVILY+NLG
Sbjct: 330 VMIYKKSISINAAGPSNGKIINLINVDVERIGDFSWYIHKIWLLPVQIALALVILYRNLG 389
Query: 415 AAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQ 474
AAP+ AL +TIF+MVSNTPLAN QE HS IM+AKD+RIK TSETLK+MRVLKL SWEQ
Sbjct: 390 AAPSITALLATIFIMVSNTPLANVQESLHSKIMDAKDSRIKLTSETLKNMRVLKLHSWEQ 449
Query: 475 EFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLS 534
FLKK+L+LRE+ER LK+YLYTCS IAFLFW SPTLVSV TFG C+++K PLT+G VLS
Sbjct: 450 TFLKKVLKLREVERSWLKRYLYTCSVIAFLFWVSPTLVSVFTFGACVMMKVPLTAGTVLS 509
Query: 535 ALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIE 594
A+ATFRILQEPIYNLPELISMIAQTKVSL RIQEFI+E++Q+K I P S SDVAI++E
Sbjct: 510 AIATFRILQEPIYNLPELISMIAQTKVSLDRIQEFIREEDQRKRIYYPPSNPSDVAIEME 569
Query: 595 AGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA 654
GEY+W+A ++NFKKPTIK+ +KM+I KG KVAVCGSVGSGKSSLL SILGEIP++SG
Sbjct: 570 VGEYSWEASDQNFKKPTIKVAEKMQIPKGYKVAVCGSVGSGKSSLLCSILGEIPQVSGTQ 629
Query: 655 IKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVV 714
+KVHG KAYVPQS+WIQ+GT+REN+LFGK++ + FYE+VLE CALNQDI++W DGD S++
Sbjct: 630 MKVHGSKAYVPQSAWIQSGTVRENVLFGKEIDKHFYEDVLEACALNQDIKLWLDGDCSLL 689
Query: 715 GERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVL 774
GERG+NLSGGQKQRIQLARAVYS++DVY DDPFSAVDA TGTHLFK+CL+ LLS KTV+
Sbjct: 690 GERGMNLSGGQKQRIQLARAVYSDADVYFLDDPFSAVDACTGTHLFKRCLLQLLSGKTVV 749
Query: 775 YTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQED 834
Y TH LEF++AADLVLVMK+G+I QSGKY +L++D N EL R + AHR+ L+ V P +ED
Sbjct: 750 YATHHLEFIEAADLVLVMKNGQIVQSGKYGELMSDSNGELARHIAAHRRFLNGVKPFKED 809
Query: 835 KCLSRVPCQMSQIT--EERFARPISCGEFSGRSQDEDTELGRVKWTVYSAFITLVYKGAL 892
K + P + QI +E + + G S R+Q+E+ + GRVKW+VYS FIT YKGAL
Sbjct: 810 KPHHKRPRKTHQIEVLDENSSLSLGNGSQSVRTQEEEIQTGRVKWSVYSTFITSAYKGAL 869
Query: 893 VPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLA 952
VP+ILLCQVLFQ LQMGSNYWI+WAT+E+ KVSREQL+G+FI +SGGSS FILGRAVL+A
Sbjct: 870 VPIILLCQVLFQILQMGSNYWISWATEEEGKVSREQLLGIFILMSGGSSIFILGRAVLMA 929
Query: 953 TIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFAL 1012
TIAI+TAQR+FL M+TS+F APISFFD+ PSS+ILNR STDQST+DTDIPYRL GLAFAL
Sbjct: 930 TIAIETAQRMFLGMVTSIFAAPISFFDAKPSSQILNRSSTDQSTLDTDIPYRLGGLAFAL 989
Query: 1013 IQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSES 1072
IQLLSIIILMS+ AWQVFPLFLV+L ISIWYQ YYI+TARELARMVG RKAPILHHFSE+
Sbjct: 990 IQLLSIIILMSKVAWQVFPLFLVVLAISIWYQGYYISTARELARMVGIRKAPILHHFSET 1049
Query: 1073 IAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIIL 1132
+ GAT IRCFNQE+RFL + +L+DDYS V FHN +MEWLCLRIN LF+ FFL LIIL
Sbjct: 1050 VVGATIIRCFNQEDRFLKKXLNLVDDYSRVVFHNSTSMEWLCLRINFLFDVVFFLALIIL 1109
Query: 1133 VTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLV 1192
VTLPR+AIDPSLAGLAATYGLN+NVLQAWVIWNLCNVENKMISVERILQFTNI SEAP +
Sbjct: 1110 VTLPRTAIDPSLAGLAATYGLNMNVLQAWVIWNLCNVENKMISVERILQFTNIASEAPPI 1169
Query: 1193 IKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLI 1252
I++ RP PEWP GKIELENL VQY P LP+VL+GITCTFP ++KIGVVGRTGSGKSTLI
Sbjct: 1170 IEDCRPMPEWPKEGKIELENLQVQYRPDLPLVLRGITCTFPXKEKIGVVGRTGSGKSTLI 1229
Query: 1253 QALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQ 1312
Q LFR+VEPS GRILIDGVDI IGL DLRS+L IIPQDP LFQGT+RTNLDPL+QHSDQ
Sbjct: 1230 QTLFRLVEPSAGRILIDGVDICKIGLHDLRSKLGIIPQDPTLFQGTMRTNLDPLQQHSDQ 1289
Query: 1313 EIWEV 1317
EIWEV
Sbjct: 1290 EIWEV 1294
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356528244|ref|XP_003532715.1| PREDICTED: ABC transporter C family member 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1729 bits (4478), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 868/1319 (65%), Positives = 1034/1319 (78%), Gaps = 22/1319 (1%)
Query: 13 DKVLESVNVAFFIGLFTRLWIEILKR--RRDDGYILMA--RRAAGLVIVLCNVL----IF 64
D +L +VNVAF + L ++ L++ R + +++ +R +V + VL I
Sbjct: 5 DALLGTVNVAFLYAILIWLLVDSLRQSTRNNHARVVLHYFKRGGPMVFAVFTVLSCAVIS 64
Query: 65 ILYMGFGFYEYWNFRIVSFKSVSLVVTWALATVVALCSRYYRTLGEHK-RWPLVLVLWWV 123
++ + FY+Y + RI+ F SVSLV+TW LAT+V+ S + + R+PLVL+LWW
Sbjct: 65 VMNIALAFYQYSSRRIIGFNSVSLVLTWVLATIVSFYSMRTKVRENKRFRFPLVLILWWF 124
Query: 124 VHLVIVLVCVSVYLLTHLSSIGLPHILPEAKAVDFVSLPLLVLLCFNATYACCCARDPSD 183
+I + +S L+ SI L L + VD VSLPLLVLLCFN CAR+ SD
Sbjct: 125 FACIIDALLLSSKLVKKFESINLWFFLSKDNVVDSVSLPLLVLLCFNV-----CARENSD 179
Query: 184 LD---IPLLREEDDEFLCKNISTFASAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQ 240
L+ + L +EE+ ++ F +A + SK+ F WLN +F+ GRIQKLEL HIPP+P
Sbjct: 180 LEQEQMLLQKEEESSMEEEDEQAFTNASMWSKLAFRWLNPIFKTGRIQKLELGHIPPVPP 239
Query: 241 SETANDASSLLEESLRKQKTDATSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITN 300
SETA +ASS+LEESLRKQK SL + I +++WKSLALNA AGVNT ASYIGP LITN
Sbjct: 240 SETAENASSVLEESLRKQKLKGGSLTKAIAYSIWKSLALNAVLAGVNTGASYIGPLLITN 299
Query: 301 FVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKR 360
FV+FL G + SS YGLVLA +F AKT ESL+QRQWYFGA RIGIRVR+ALT LIY +
Sbjct: 300 FVNFLLGDNGDSSIQYGLVLAFIFFLAKTAESLSQRQWYFGAQRIGIRVRAALTSLIYSK 359
Query: 361 SMAIKFAGPSSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFA 420
S+ +K AGP+ G IIN+INVDVERIGDF YIH +WLLPVQV LALVILY NLG P+FA
Sbjct: 360 SLLMKCAGPTQGKIINLINVDVERIGDFCWYIHGVWLLPVQVILALVILYINLGGTPSFA 419
Query: 421 ALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKL 480
A TI VMV NTPLAN+QE HS IMEAKD+RIK TSET+K++R+LKL SWE FL+KL
Sbjct: 420 AFGVTILVMVCNTPLANKQEGLHSKIMEAKDSRIKVTSETMKNIRILKLHSWETSFLQKL 479
Query: 481 LRLREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFR 540
L+LRE ER L+KYLYTCSA+A LFW SPTLVSV+TFG CIL+KT LT+ VLSALATFR
Sbjct: 480 LQLRETERRWLQKYLYTCSAVATLFWTSPTLVSVVTFGACILVKTELTTATVLSALATFR 539
Query: 541 ILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAW 600
ILQEPIYNLPELISMI QTKVS+ RIQEFIKED+Q + I +SK S VAI+I+ GEY W
Sbjct: 540 ILQEPIYNLPELISMIIQTKVSVDRIQEFIKEDDQNQFINRHSSKISAVAIEIKPGEYVW 599
Query: 601 DAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK 660
+ ++ K PTI++T K+ I KG KVA+CGSVGSGKSSL+ +LGEIP +SGA KV+G
Sbjct: 600 ETNDQTHKNPTIQITGKLVIKKGQKVAICGSVGSGKSSLICCLLGEIPLVSGAVTKVYGT 659
Query: 661 KAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720
++YVPQS WIQ+GT+RENILFGK M++ FYE+VL+GCAL+QDI MW DGDL+ V ERGIN
Sbjct: 660 RSYVPQSPWIQSGTVRENILFGKQMKKDFYEDVLDGCALHQDINMWGDGDLNPVEERGIN 719
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQL 780
LSGGQKQRIQLARAVY++SD+Y DDPFSAVDAHTGTHLFK+CLM LL KTV+Y THQL
Sbjct: 720 LSGGQKQRIQLARAVYNDSDIYFLDDPFSAVDAHTGTHLFKKCLMKLLYDKTVVYATHQL 779
Query: 781 EFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRV 840
EFL+AADL+LVMKDGKI +SG Y+DLIA NSELV+QM A++++L Q+NP QED S
Sbjct: 780 EFLEAADLILVMKDGKIVESGSYKDLIACPNSELVQQMAAYQETLHQINPCQEDDSASCR 839
Query: 841 PCQMSQI--TEERFARPISCGEFSGRSQDEDTELGRVKWTVYSAFITLVYKGALVPVILL 898
PCQ +QI EE + E GRS++E+ E GRVKW+VYS F+ YKG LVPVILL
Sbjct: 840 PCQKNQIEVAEENIQEIM---EDWGRSKEEEAETGRVKWSVYSTFVISAYKGVLVPVILL 896
Query: 899 CQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKT 958
CQ+LFQ +QMGSNYWI+WAT++K +V+ +QL+G F LS G + FILGR VL+A +A++T
Sbjct: 897 CQILFQVMQMGSNYWISWATEQKGRVNNKQLMGTFALLSFGGTIFILGRTVLMAAVAVET 956
Query: 959 AQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSI 1018
AQRLFL MITSVFRAP+SFFD+TPSSRI++R STDQSTVDTDIPYRLAGL FALIQLLSI
Sbjct: 957 AQRLFLGMITSVFRAPVSFFDTTPSSRIMSRSSTDQSTVDTDIPYRLAGLVFALIQLLSI 1016
Query: 1019 IILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATT 1078
I+LMSQ AWQV LF V+ ISIWYQAYYITTARELARMVG RKAPILHHFSESIAGA T
Sbjct: 1017 IVLMSQVAWQVILLFFVVFAISIWYQAYYITTARELARMVGIRKAPILHHFSESIAGAAT 1076
Query: 1079 IRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRS 1138
IRCFNQE F+ + +LIDDYS V FHN GTMEWL +RIN LFN F+ VL+ILVTLPRS
Sbjct: 1077 IRCFNQEKLFMTKIKALIDDYSRVAFHNFGTMEWLSVRINFLFNLVFYFVLVILVTLPRS 1136
Query: 1139 AIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRP 1198
IDPSLAGL ATYGLNLNVLQAWVIWNLCNVENKMISVERILQF++IPSEAPL+I++ RP
Sbjct: 1137 TIDPSLAGLVATYGLNLNVLQAWVIWNLCNVENKMISVERILQFSSIPSEAPLIIQDCRP 1196
Query: 1199 SPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRV 1258
PEWP GK+EL NL ++Y+P PMVLKG+TC FP +KKIGVVGRTGSGKSTL+QALFRV
Sbjct: 1197 EPEWPKEGKVELRNLHIRYDPAAPMVLKGVTCVFPAQKKIGVVGRTGSGKSTLVQALFRV 1256
Query: 1259 VEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEV 1317
VEP G ILIDGVDIS IGLQDLRS+L IIPQDP LF GTVRTNLDPLEQH+DQE+WEV
Sbjct: 1257 VEPLEGCILIDGVDISKIGLQDLRSKLGIIPQDPTLFLGTVRTNLDPLEQHADQELWEV 1315
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356510881|ref|XP_003524162.1| PREDICTED: ABC transporter C family member 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1709 bits (4426), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 863/1322 (65%), Positives = 1034/1322 (78%), Gaps = 22/1322 (1%)
Query: 9 LVSADKVLESVNVAFFIGLFTRLWIEILKRRR-DDGYILMARRAAGLVIVLCNVL----I 63
+V D +L +VNVAF + L ++ L++ ++ + +V + VL I
Sbjct: 1 MVVLDALLGTVNVAFLYAILIWLLVDSLRQSTLSHVRVVDCFKRGPMVFAVSTVLSCAVI 60
Query: 64 FILYMGFGFYEYWNFRIVSFKSVSLVVTWALATVVALCSRYYRTLGEHKRW--PLVLVLW 121
++ M FY+Y + +I+ F SVSL +TW LAT+V+ S + + E+KR+ PLVL+LW
Sbjct: 61 SVMNMALAFYQYSSRKIIGFNSVSLALTWVLATIVSFYSMRTK-VRENKRFGFPLVLILW 119
Query: 122 WVVHLVIVLVCVSVYLLTHLSSIGLPHILPEAKAVDFVSLPLLVLLCFNATYACCCARDP 181
WV I + +S+ L+ SI L L E VD VSLPLLVLLCFN CAR+
Sbjct: 120 WVFACSIDAILLSLKLVKGFESIDLWFFLSEDNVVDSVSLPLLVLLCFNV-----CAREN 174
Query: 182 SDLD----IPLLREEDDEFLCKNISTFASAGVLSKITFHWLNQLFQRGRIQKLELLHIPP 237
SD++ + L +EE+ ++ F +A + SK+ F WLN +F+ GRI+KLEL HIPP
Sbjct: 175 SDVEQEQQLLLEKEEESSMEEEDEEAFTNASMWSKLAFRWLNPIFKAGRIKKLELGHIPP 234
Query: 238 IPQSETANDASSLLEESLRKQKTDATSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFL 297
+P SETA +ASS+LEESLRKQK + SL + I +++WKSLALNA AGVNT ASYIGP L
Sbjct: 235 VPPSETAENASSVLEESLRKQKLEGGSLTKAIAYSLWKSLALNAVLAGVNTGASYIGPLL 294
Query: 298 ITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLI 357
ITNFV+FL G SS YGL+LA +F AKTVESL+QRQWYFGA RIGIRVR+AL LI
Sbjct: 295 ITNFVNFLLGDDGDSSIQYGLLLAFIFFLAKTVESLSQRQWYFGAQRIGIRVRAALISLI 354
Query: 358 YKRSMAIKFAGPSSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAP 417
Y +S+ +K AGP+ G IIN+INVDVERIGDF YIH +WLLPVQ+ LALVILY NLG P
Sbjct: 355 YGKSLLMKCAGPTQGRIINLINVDVERIGDFCWYIHGVWLLPVQIILALVILYINLGGTP 414
Query: 418 AFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFL 477
+FAA TI VMV NTPLAN+QE HS IMEAKD+RIK TSET+K++R+LKL SWE FL
Sbjct: 415 SFAAFGVTILVMVCNTPLANKQEGLHSKIMEAKDSRIKVTSETMKNIRILKLHSWETSFL 474
Query: 478 KKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALA 537
+KLL+LREIER L+KYLYTCSA+A LFW SPTLVSV+TFG CIL+KT LT+ VLSALA
Sbjct: 475 QKLLQLREIERGWLQKYLYTCSAVATLFWTSPTLVSVVTFGACILVKTELTTATVLSALA 534
Query: 538 TFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGE 597
TFRILQEPIYNLPELISMI QTKVS+ RI EFIKED+Q + I + TSK S+VAI+I+ GE
Sbjct: 535 TFRILQEPIYNLPELISMIIQTKVSVDRIHEFIKEDDQNQFINKLTSKISEVAIEIKPGE 594
Query: 598 YAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV 657
YAW+ ++ KP I++T K+ I KG KVAVCGSVGSGKSSLL +LGEIP +SGA KV
Sbjct: 595 YAWETNDQTHTKPAIQITGKLVIKKGQKVAVCGSVGSGKSSLLCCLLGEIPLVSGAVTKV 654
Query: 658 HGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGER 717
+G ++YVPQS WIQ+GT+RENILFGK M++ FYE+VL+GCAL+QDI MW DGDL++V ER
Sbjct: 655 YGTRSYVPQSPWIQSGTVRENILFGKQMKKEFYEDVLDGCALHQDINMWGDGDLNLVEER 714
Query: 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTT 777
GINLSGGQKQRIQLARAVY++SD+Y DDPFSAVDAHTGTHLFK+CLM LL KTV+Y T
Sbjct: 715 GINLSGGQKQRIQLARAVYNDSDIYFLDDPFSAVDAHTGTHLFKKCLMKLLYDKTVVYAT 774
Query: 778 HQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCL 837
HQLEFL+AADL+LVMKDGKI +SG Y++LIA NSELV+QM AH +++ ++NP QED +
Sbjct: 775 HQLEFLEAADLILVMKDGKIVESGSYKELIACPNSELVQQMAAHEETVHEINPCQEDDSV 834
Query: 838 SRVPCQMSQ--ITEERFARPISCGEFSGRSQDEDTELGRVKWTVYSAFITLVYKGALVPV 895
S PCQ +Q + EE + E GRS++E+ E GRVKW+VYS F+T YKGALVPV
Sbjct: 835 SCRPCQKNQMEVAEENIQEIM---EDWGRSKEEEAETGRVKWSVYSTFVTSAYKGALVPV 891
Query: 896 ILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIA 955
ILLCQ+LFQ +QMGSNYWI+WAT++K +V+ +QL+ F+ LS + FILGR VL+A +A
Sbjct: 892 ILLCQILFQVMQMGSNYWISWATEQKGRVNNKQLMRTFVLLSLTGTIFILGRTVLMAAVA 951
Query: 956 IKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQL 1015
++TAQRLFL MITSVFRAP+SFF +TPSSRI++R STDQS VDTDIPYRLAGL FALIQL
Sbjct: 952 VETAQRLFLGMITSVFRAPVSFFVTTPSSRIMSRSSTDQSIVDTDIPYRLAGLVFALIQL 1011
Query: 1016 LSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAG 1075
LSII+LMSQ AWQV LF +L ISIWYQAYYITTARELARMVG RKAPILHHFSESIAG
Sbjct: 1012 LSIIVLMSQVAWQVILLFFAVLPISIWYQAYYITTARELARMVGIRKAPILHHFSESIAG 1071
Query: 1076 ATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTL 1135
A TIRCFNQE F + +LIDDYS V FHN GTMEWL +RIN LFN F+ VL+ILVTL
Sbjct: 1072 AATIRCFNQEKLFFTKVKALIDDYSRVAFHNFGTMEWLSVRINFLFNLVFYFVLVILVTL 1131
Query: 1136 PRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKN 1195
PRS IDPSLAGL ATYGLNLNVLQAWVIWNLCNVENKMISVERILQF++IPSEAPL+I++
Sbjct: 1132 PRSTIDPSLAGLVATYGLNLNVLQAWVIWNLCNVENKMISVERILQFSSIPSEAPLIIQD 1191
Query: 1196 SRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQAL 1255
RP PEWP GK+EL NL ++Y+P PMVLK +TC FP +KKIGVVGRTGSGKSTL+QAL
Sbjct: 1192 CRPEPEWPKEGKVELRNLHIRYDPAAPMVLKCVTCVFPAQKKIGVVGRTGSGKSTLVQAL 1251
Query: 1256 FRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIW 1315
FRVVEP G ILIDGVDIS IGLQDLRS+L IIPQDP LF GTVRTNLDPLEQH DQE+W
Sbjct: 1252 FRVVEPLEGSILIDGVDISKIGLQDLRSKLGIIPQDPTLFLGTVRTNLDPLEQHEDQELW 1311
Query: 1316 EV 1317
EV
Sbjct: 1312 EV 1313
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297738346|emb|CBI27547.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1626 bits (4210), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 849/1319 (64%), Positives = 987/1319 (74%), Gaps = 108/1319 (8%)
Query: 13 DKVLESVNVAFFIGLFTRLWIEILKRRRDDGY-------ILMARRAAGLVIVLCNVLIFI 65
D L +NVAFF L T + + +L++RRD G + +V VL N +I +
Sbjct: 2 DSSLGLINVAFFWLLLTWVLVGVLRKRRDGGGADSENEPTMRKSTVFTVVSVLSNAIICV 61
Query: 66 LYMGFGFYEYWNFRIVSFKSVSLVVTWALATVVALCSRYYRTLGEHKRWPLVLVLWWVVH 125
++GF YE+W+ ++ + +TW LA ++ + T E+KRWPL+L WWV
Sbjct: 62 SHLGFCLYEFWSLETINLVHIFSAMTWVLAAIITVSCFRNSTTRENKRWPLILTSWWVFS 121
Query: 126 LVIVLVCVSVYLLTHLSSIGLPHI----LPEAKAVDFVSL-PLLVLLCFNATYACCCARD 180
++ + VSVYL+T L + LP +P+A DF SL PL +LLCFN C +
Sbjct: 122 SILSSLSVSVYLVTRLKILTLPDFWPDFVPQATIDDFASLIPLWILLCFNV-LPFNCGKK 180
Query: 181 PSDLDIPLLREEDDEFLCKNISTFASAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQ 240
SDL+ PLL E L + ++SAG+ SK+TF WLN LF++GR+QK++L HIPP+PQ
Sbjct: 181 RSDLEHPLLESEGGN-LSHGVDPYSSAGIWSKLTFLWLNPLFRKGRVQKIQLHHIPPVPQ 239
Query: 241 SETANDASSLLEESLRKQKTDATSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITN 300
SE A ASSLLEE+L KQKT T + + +VW+SLA+NA FAG NTIASY+GPFLIT+
Sbjct: 240 SEKAETASSLLEETLTKQKTSVT---KALFCSVWRSLAINAVFAGANTIASYMGPFLITH 296
Query: 301 FVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKR 360
FV+FLSGK D SSY+YGLVLA +F AKT+ESL+QRQWY G RIGIRVR+AL VL+YK+
Sbjct: 297 FVNFLSGKGDDSSYYYGLVLALIFFMAKTLESLSQRQWYLGGQRIGIRVRAALMVLVYKK 356
Query: 361 SMAIKFAGPSSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFA 420
S++IK+AG +SG IIN+INVDV+RIGDF L IH +WLLPVQV LALVILY+NLGAAP+
Sbjct: 357 SLSIKYAGSNSGKIINLINVDVDRIGDFCLCIHGVWLLPVQVGLALVILYRNLGAAPSMT 416
Query: 421 ALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKL 480
ALF+T+ VMV NTPLA RQER HS IMEAKD+RIKATSETLKSMRVLKL SWE FL K+
Sbjct: 417 ALFATVLVMVGNTPLAKRQERLHSKIMEAKDSRIKATSETLKSMRVLKLHSWEDTFLNKI 476
Query: 481 LRLREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFR 540
LRE ER LK+YLYTCSA+AFLFW SPTLVSVITF VCI LAT+
Sbjct: 477 KELRETERHWLKRYLYTCSAVAFLFWTSPTLVSVITFAVCI-------------KLATY- 522
Query: 541 ILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAW 600
PTS++S+V+IDIE GEYAW
Sbjct: 523 -----------------------------------------PTSESSEVSIDIEVGEYAW 541
Query: 601 DAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK 660
+EN K PTIK+ +M IMKG KVAVCGSVGSGKSSLL SILGEIPRISG KV+G
Sbjct: 542 TC-DENLK-PTIKIDQRMIIMKGYKVAVCGSVGSGKSSLLCSILGEIPRISGTGSKVYGS 599
Query: 661 KAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720
KAYVPQS+WIQTGTIR+N+LFGK++ ++FYE+VLE CAL++DI++W +GDLSVVGERG+N
Sbjct: 600 KAYVPQSAWIQTGTIRDNVLFGKEINKAFYEDVLEACALDRDIQLWYNGDLSVVGERGMN 659
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQL 780
LSGGQKQRIQLARA+YS KQ LM L TV+Y THQL
Sbjct: 660 LSGGQKQRIQLARAIYS-----------------------KQHLM-LFFFTTVIYVTHQL 695
Query: 781 EFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRV 840
EFLDA+DLV MKDG I QSGKYEDLIAD NSELVRQM AH KSLDQVNP QE+ C +
Sbjct: 696 EFLDASDLV--MKDGIIVQSGKYEDLIADPNSELVRQMTAHNKSLDQVNPSQEN-CFTNK 752
Query: 841 PCQMSQIT--EERFARPISCGEFSGRSQDEDTELGRVKWTVYSAFITLVYKGALVPVILL 898
P Q +I EE PIS G+ E+TE GRVKW VYS FIT YKG LVPVILL
Sbjct: 753 PPQKKKIDLIEENSHDPISNGKLLDGIHKEETESGRVKWHVYSTFITSAYKGGLVPVILL 812
Query: 899 CQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKT 958
CQVLFQ LQMGSNYWIAWAT+E+ +VSREQLIGVF LSGGSS FILGRAVLL+TIAI+T
Sbjct: 813 CQVLFQGLQMGSNYWIAWATEEEGRVSREQLIGVFSLLSGGSSIFILGRAVLLSTIAIET 872
Query: 959 AQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSI 1018
A+ LF MI +VFRAP+SFFDSTPSS+ILNR STDQSTVDTDIPYRLAGLAFALIQLLSI
Sbjct: 873 ARHLFSEMIKAVFRAPVSFFDSTPSSQILNRSSTDQSTVDTDIPYRLAGLAFALIQLLSI 932
Query: 1019 IILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATT 1078
I+LMSQ AWQVF LF+ IL ISIWYQA +LARMVG RKAPILHHFSES+AGA T
Sbjct: 933 IVLMSQVAWQVFLLFVSILAISIWYQA-----RTKLARMVGVRKAPILHHFSESVAGAAT 987
Query: 1079 IRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRS 1138
IRCF+Q++RFL R+ SLIDDYS V FHN TMEWLC+RIN LFN FFLVL+ILV+LPRS
Sbjct: 988 IRCFSQDDRFLRRNLSLIDDYSRVAFHNTATMEWLCVRINFLFNLVFFLVLVILVSLPRS 1047
Query: 1139 AIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRP 1198
AI PSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFT IPSEAPLVI+N RP
Sbjct: 1048 AISPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTKIPSEAPLVIENCRP 1107
Query: 1199 SPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRV 1258
S EWPS+G+I+L+NL V+Y PTLPMVLKGITCTFPGE+KIGVVGRTGSGKSTLIQALFRV
Sbjct: 1108 SLEWPSNGRIDLDNLHVRYTPTLPMVLKGITCTFPGERKIGVVGRTGSGKSTLIQALFRV 1167
Query: 1259 VEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEV 1317
VEPS G+ILIDGVDIS +GL+DLRSRLSIIPQDP LFQGT+RTNLDPL +HSDQEIWEV
Sbjct: 1168 VEPSEGQILIDGVDISKMGLKDLRSRLSIIPQDPTLFQGTMRTNLDPLGEHSDQEIWEV 1226
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357131484|ref|XP_003567367.1| PREDICTED: ABC transporter C family member 3-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 1548 bits (4007), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 766/1323 (57%), Positives = 968/1323 (73%), Gaps = 34/1323 (2%)
Query: 14 KVLESVNVAFFIGLFTRLWIEILKRRR--------DDGYILMA-RRAAGL----VIVLCN 60
+ L+ + A F L + E KRR+ G ++ A RR A L ++ CN
Sbjct: 55 QALDYIRAAAFAILLVWILAEFAKRRKRRQEAAGHGHGAVVSAQRRGAALLQAHIVAFCN 114
Query: 61 VLIFILYMGFGFYEYWNFRIVSFKSVSLVVTWALATVVALCSRYYRTLGEHKRWPLVLVL 120
+ +L++GF W ++VS V +W LAT+ L ++ G WP+VLV
Sbjct: 115 ASMTLLHIGFSVLGVWKQQVVSPGLVFESASWLLATLFLLYCKH-EGAGVVSNWPVVLVS 173
Query: 121 WWVVHLVIVLVCVSVYLLTHLSSIGLPHILPEAKAVDFVSLPLLVLLCFNATYACCCARD 180
WW + L+ S++L H+ A ++F SLP ++C +
Sbjct: 174 WWFFSFLSELLITSLHLF---------HLFNSATVINFTSLPFCTIICLVVAAMRLSKAN 224
Query: 181 PSDLDIPLLREEDDEFLCKNISTFASAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQ 240
+L+ PLL ED + + S F+++G S++TF WLN + ++G +LEL HIP +PQ
Sbjct: 225 RKELNQPLLEGEDTDDSSR--SRFSNSGWWSRLTFRWLNPVLEKGHKVRLELEHIPSVPQ 282
Query: 241 SETANDASSLLEESLRKQKTDATSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITN 300
SETA + + L+E+L QK + L + II AVW L NA FAG NT++SY+GPFLIT
Sbjct: 283 SETAEQSYAFLQETLHTQKPEPMQLRKTIICAVWTPLVRNAVFAGFNTVSSYMGPFLITY 342
Query: 301 FVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKR 360
V LS K+ + G +LA + +KTVES+TQRQWYFGA RIG +VR+AL V IYK+
Sbjct: 343 LVELLSDKNTDKGHGRGYMLAFLLFASKTVESITQRQWYFGARRIGFQVRAALMVSIYKK 402
Query: 361 SMAIKFAGPSSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFA 420
S+++K + +G ++N ++VDVE++ DFF YIH IWLLP Q+FLAL ILY +LGA + +
Sbjct: 403 SLSLKNSSTVAGKVVNFLDVDVEKVSDFFWYIHGIWLLPFQIFLALAILYSSLGAMASLS 462
Query: 421 ALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKL 480
A+ T+ VMVSNTPL Q + IM+A+D+RIKA +E +KSMR+LKL +WE +L KL
Sbjct: 463 AVLITVLVMVSNTPLTKSQHNLNMKIMDARDSRIKAMAEAMKSMRILKLHAWETAYLDKL 522
Query: 481 LRLREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFR 540
L+LR++ER L++YLYTCSAI FLFWASPTLVSVITFGVCIL+ PL++G VLSALATFR
Sbjct: 523 LKLRDVERGWLRRYLYTCSAICFLFWASPTLVSVITFGVCILVDIPLSAGTVLSALATFR 582
Query: 541 ILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKP-----ITEPTSKASDVAIDIEA 595
+LQ+PIYNLPEL+S+I QTKVSL RI+EFIKED Q KP ITE A ++IE
Sbjct: 583 VLQDPIYNLPELVSVITQTKVSLDRIEEFIKEDQQGKPSCYGNITEKKDLAMAGEMEIEP 642
Query: 596 GEYAWDAREENFK-KPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA 654
GEY+W+A + K K T+K+ K+ I KG KVAVCG VGSGKSSLL SI+GEIPRISGA
Sbjct: 643 GEYSWEADNSSKKTKITLKIERKVSIRKGLKVAVCGPVGSGKSSLLYSIMGEIPRISGAE 702
Query: 655 IKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVV 714
V G +AYVPQS+WIQTGTI++N+LFGK M + YEEVL+GCAL++D+E+WA+GD++VV
Sbjct: 703 TMVAGSRAYVPQSAWIQTGTIQDNVLFGKAMDKRLYEEVLQGCALDRDMELWANGDMTVV 762
Query: 715 GERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVL 774
GERG+NLSGGQKQRIQLARA+YSNSDVY DDPFSAVDAHT HLFK+CL+ L+S KTV+
Sbjct: 763 GERGVNLSGGQKQRIQLARALYSNSDVYFLDDPFSAVDAHTSAHLFKECLLRLMSSKTVM 822
Query: 775 YTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQED 834
Y THQLEFL +DLVLVMK G+I QSG+Y+DLIAD++ EL++QM AH +SL QVNP +
Sbjct: 823 YVTHQLEFLRDSDLVLVMKGGRIVQSGRYDDLIADKDGELLKQMAAHNQSLSQVNPAKTH 882
Query: 835 KCLSRVPCQMSQITEERFARPISCGEFSGRSQDEDTELGRVKWTVYSAFITLVYKGALVP 894
+ Q+ S GR +E+ E GRVKW VY F+T Y GAL+P
Sbjct: 883 GLTKSKRHKKKQV---ELTEIESAHHVVGRECEEERESGRVKWDVYRKFVTSAYGGALIP 939
Query: 895 VILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATI 954
V+L C V FQ LQ+ SNYWIAWA + +VS++++IG+F+ LS GSS FILGRAV L+TI
Sbjct: 940 VVLACHVFFQGLQICSNYWIAWAAERPYQVSKQKMIGLFVLLSAGSSAFILGRAVFLSTI 999
Query: 955 AIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQ 1014
AI+TAQ+LFL MIT++FRAP+SFFDSTPSSRILNR STDQ+TVDTDIPYRLAGL FA+IQ
Sbjct: 1000 AIETAQQLFLAMITNIFRAPMSFFDSTPSSRILNRASTDQATVDTDIPYRLAGLVFAMIQ 1059
Query: 1015 LLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIA 1074
LLSII +MSQ AW +F LFL+I+ IS WYQ YYI++ARELARMVG RKAP+LHHFSE+++
Sbjct: 1060 LLSIIFIMSQIAWPIFVLFLIIIAISAWYQGYYISSARELARMVGIRKAPVLHHFSETVS 1119
Query: 1075 GATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVT 1134
GA TIRCFNQ +FL +S +LIDDY+ VTFHN T+EWL +RIN LFN FF++L+ILV
Sbjct: 1120 GAATIRCFNQGEKFLAKSFALIDDYTRVTFHNSATVEWLSIRINFLFNLVFFVMLVILVL 1179
Query: 1135 LPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIK 1194
LPR IDPSLAGLAATYGLNLNVLQAWVIWNLC+VENKMI VERILQ++NIPSE+PL +
Sbjct: 1180 LPRDTIDPSLAGLAATYGLNLNVLQAWVIWNLCHVENKMICVERILQYSNIPSESPLEVT 1239
Query: 1195 NSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQA 1254
N RP+ WP G I++E L +QY +PMVLKGI+CTFPGE+KIGVVGRTGSGKSTLIQA
Sbjct: 1240 NCRPTETWPWCGTIQIEALQIQYKLDMPMVLKGISCTFPGERKIGVVGRTGSGKSTLIQA 1299
Query: 1255 LFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEI 1314
LFR+VEPS GRILIDGVDIS++GL DLR +LSIIPQ+P LFQGTVR NLDPL+Q+ D EI
Sbjct: 1300 LFRIVEPSAGRILIDGVDISLLGLHDLRCKLSIIPQEPTLFQGTVRANLDPLQQYLDTEI 1359
Query: 1315 WEV 1317
WEV
Sbjct: 1360 WEV 1362
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|56784517|dbj|BAD82774.1| putative MRP-like ABC transporter [Oryza sativa Japonica Group] gi|56784875|dbj|BAD82115.1| putative MRP-like ABC transporter [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 1542 bits (3993), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 776/1326 (58%), Positives = 989/1326 (74%), Gaps = 45/1326 (3%)
Query: 15 VLESVNVAFFIGLFTRLWIEILK-----RRRDDGYILMARRAA-----GLVIVLCNVLIF 64
VL+ V +A F L + E+ + RR G ++ ++R +IVLCN I
Sbjct: 52 VLDYVRIASFAILLVWILAELARLNKRHRREGHGDMVSSQRKGEVLLPAYIIVLCNASIS 111
Query: 65 ILYMGFGFYEYWNFRIVSFKSVSLVVTWALATVVALCSRYYRTLGEHKRWPLVLVLWWVV 124
++++ F +W + VS + V+W L T+ L ++ G WP VL+ WW
Sbjct: 112 LMHICFSVLVFWKRQTVSLDLIFKSVSWLLVTLFLLYCKH-EGAGVVSNWPSVLLSWWFF 170
Query: 125 HLVIVLVCVSVYLLTHLSSIGLPHILPEAKAVDFVSLPLLVLLCFNATYACCCARDPSDL 184
+ + S++LL +S A VDF SLPL +C A + D
Sbjct: 171 SFLSESLLTSLHLLHLFNS---------ATVVDFTSLPLCTFICLVAVTMRPSKANQQDQ 221
Query: 185 DIPLL-REEDDEFLCKNISTFASAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQSET 243
+ PLL RE+ D+ + F+++G S +TF WLN +F++G +LEL HIP +PQS+T
Sbjct: 222 NQPLLVREDSDD---SSTDRFSNSGWWSCLTFQWLNPIFEKGHKVRLELDHIPSVPQSDT 278
Query: 244 ANDASSLLEESLRKQKTDATSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVS 303
AN + +LL+E+L KQK + + + II AVW L N FAG+NTIASY+GPFLIT V
Sbjct: 279 ANQSYALLQETLHKQKPEPMPMRRAIICAVWTPLIANGVFAGLNTIASYMGPFLITYLVE 338
Query: 304 FLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMA 363
LS K+ + +G +LA +F +KTVESL+QRQWYFGA RIG RVR+AL V IY++S+
Sbjct: 339 LLSDKNPDKGHGHGYMLACLFFASKTVESLSQRQWYFGARRIGFRVRAALMVSIYQKSLL 398
Query: 364 IKFAGPSSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALF 423
+K + +SG I+N ++VDVE++ +FF Y+HRIWLLP+Q+ LAL ILY++LGA + +A+
Sbjct: 399 MKNSSTASGKIVNFLDVDVEKVSEFFWYVHRIWLLPLQISLALAILYRSLGAMASLSAVL 458
Query: 424 STIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRL 483
+T+ VMVSNTPLA QE + IMEAKD+RIKA +E +KSMR+LKL +WE + KLL L
Sbjct: 459 ATVLVMVSNTPLAKSQENLNMKIMEAKDSRIKAMAEAMKSMRILKLHAWETAYFDKLLNL 518
Query: 484 REIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQ 543
R++ER L+KYLYTCSAIAFLFWASPTLVSV+TFGVCIL++ PL++G VLSA+ATFRILQ
Sbjct: 519 RDVERGWLRKYLYTCSAIAFLFWASPTLVSVVTFGVCILVEMPLSAGTVLSAVATFRILQ 578
Query: 544 EPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPI-TEPTSKASDV----AIDIEAGEY 598
+PIYNLPEL+SM+ QTKVSL RI+EFIKE++Q KP ++ ++ D+ A++IE G Y
Sbjct: 579 DPIYNLPELVSMVTQTKVSLDRIEEFIKEEHQGKPSRSDNNTRTKDLSMTGAMEIEPGVY 638
Query: 599 AWDAREENFKKPT--IKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK 656
W+ + + KK +K+ K+ I KG KVAVCG VGSGKSSLL SI+GEIPRI+GA
Sbjct: 639 GWEI-DNSLKKTKFMLKIDRKLSISKGQKVAVCGPVGSGKSSLLYSIMGEIPRINGAETT 697
Query: 657 VHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGE 716
V G +AYV QS+WIQTGTI++N+LFGKDM +SFYEEVL GCAL++D+E+WA+GD+++VGE
Sbjct: 698 VFGSRAYVAQSAWIQTGTIQDNVLFGKDMDRSFYEEVLHGCALDRDLELWANGDMTMVGE 757
Query: 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYT 776
RG+NLSGGQKQRIQLARA+YS+SDVY+ DDPFSAVDAHTG HLFK+CL+ L+S KTV+Y
Sbjct: 758 RGMNLSGGQKQRIQLARALYSDSDVYLLDDPFSAVDAHTGAHLFKECLLRLMSSKTVIYV 817
Query: 777 THQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQ---- 832
THQLEFL ADLVLVMKDG+I QSGKY+DL+AD+N EL QM AH +SL QV P +
Sbjct: 818 THQLEFLRDADLVLVMKDGRIVQSGKYDDLVADRNGELSMQMAAHNQSLSQVTPAKAHVL 877
Query: 833 -EDKCLSRVPCQMSQITEERFARPISCGEFSGRSQDEDTELGRVKWTVYSAFITLVYKGA 891
++K R ++++I + GR +E+ E GRVKW +Y F+ Y GA
Sbjct: 878 TKNKSHKRRQTELTEIELDH--------NVIGRECEEERESGRVKWDIYRKFVNSAYGGA 929
Query: 892 LVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLL 951
LVPVIL CQVLFQ LQ+ SNYWIAWA + + +VSRE++IG+F+ LS GSS FILGRA++L
Sbjct: 930 LVPVILACQVLFQGLQICSNYWIAWAAERQEQVSREKMIGIFVLLSAGSSVFILGRAIVL 989
Query: 952 ATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFA 1011
+TIAI+TA + FL M S+FRAPI+FFDSTPSSRILNR STDQSTVDTDIPYRLAGL FA
Sbjct: 990 STIAIETAHQFFLGMTRSIFRAPINFFDSTPSSRILNRASTDQSTVDTDIPYRLAGLIFA 1049
Query: 1012 LIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSE 1071
LIQLLSII +MSQ AW +F LF++I+ IS WYQ+YYI +ARELARMVG RKAP+LHHFSE
Sbjct: 1050 LIQLLSIIFIMSQIAWPIFILFIIIIAISTWYQSYYICSARELARMVGIRKAPVLHHFSE 1109
Query: 1072 SIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLII 1131
+++GA TIRCFNQ +F +S +LIDDYS +TFHN T+EWLC+RIN LFN FF+ L+I
Sbjct: 1110 TVSGAATIRCFNQGEKFFRKSLALIDDYSRITFHNSATIEWLCVRINFLFNLVFFVTLVI 1169
Query: 1132 LVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPL 1191
LV++PR+ IDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQF+NI SEAPL
Sbjct: 1170 LVSMPRNTIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFSNITSEAPL 1229
Query: 1192 VIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTL 1251
VI++ RP WP G I++++L V+YNP +PMVLKGI+CT PGE+KIGVVGRTGSGKSTL
Sbjct: 1230 VIEDCRPRESWPWCGTIQIDSLQVRYNPDMPMVLKGISCTIPGERKIGVVGRTGSGKSTL 1289
Query: 1252 IQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSD 1311
I ALFR+VEPS GRILID VDIS++G+ DLRSRLS+IPQ+P LFQGTVRTNLDPL+QH D
Sbjct: 1290 IHALFRIVEPSEGRILIDDVDISLLGVHDLRSRLSVIPQEPTLFQGTVRTNLDPLQQHLD 1349
Query: 1312 QEIWEV 1317
EIWEV
Sbjct: 1350 TEIWEV 1355
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1333 | ||||||
| TAIR|locus:2090029 | 1514 | ABCC3 "ATP-binding cassette C3 | 0.528 | 0.465 | 0.458 | 4.4e-288 | |
| TAIR|locus:2020235 | 1514 | ABCC5 "ATP-binding cassette C5 | 0.494 | 0.435 | 0.430 | 1.8e-262 | |
| TAIR|locus:2090039 | 1466 | ABCC6 "ATP-binding cassette C6 | 0.866 | 0.787 | 0.438 | 5.4e-260 | |
| TAIR|locus:2090049 | 1493 | ABCC7 "ATP-binding cassette C7 | 0.844 | 0.754 | 0.437 | 1.4e-254 | |
| TAIR|locus:2081755 | 1539 | ABCC14 "ATP-binding cassette C | 0.510 | 0.442 | 0.353 | 5.9e-210 | |
| TAIR|locus:2043268 | 1516 | ABCC4 "ATP-binding cassette C4 | 0.473 | 0.416 | 0.362 | 2.2e-203 | |
| TAIR|locus:2077750 | 1453 | ABCC10 "ATP-binding cassette C | 0.821 | 0.753 | 0.384 | 1.2e-201 | |
| DICTYBASE|DDB_G0284867 | 1593 | abcC8 "ABC transporter C famil | 0.468 | 0.391 | 0.319 | 1.1e-160 | |
| UNIPROTKB|F1SK59 | 1298 | F1SK59 "Uncharacterized protei | 0.771 | 0.791 | 0.312 | 3e-144 | |
| UNIPROTKB|F1MIP7 | 1543 | ABCC2 "Uncharacterized protein | 0.441 | 0.381 | 0.323 | 6.8e-143 |
| TAIR|locus:2090029 ABCC3 "ATP-binding cassette C3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1567 (556.7 bits), Expect = 4.4e-288, Sum P(2) = 4.4e-288
Identities = 339/740 (45%), Positives = 474/740 (64%)
Query: 204 FASAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQSET----ANDASSLLEESLRKQK 259
++ AG+LS +TF W++ L G + L+L +P + +++ A S+LE ++
Sbjct: 246 YSRAGILSLLTFSWMSPLIDIGNKKTLDLEDVPQLHDTDSVVGLAPKFRSMLESPDGGER 305
Query: 260 TDATS---LPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHY 316
+ T+ + + A W+ L + A FA + T+ASY+GP LI FV +L+G+ ++ H
Sbjct: 306 SGVTTFKLIKALYFTAQWEIL-VTAFFAFIYTVASYVGPALIDTFVQYLNGRRQYN--HE 362
Query: 317 GLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFA---GPSSGI 373
G VL F AK VE L+QR W+F ++GIR+RSAL +IY++ + + G +SG
Sbjct: 363 GYVLVITFFAAKIVECLSQRHWFFRLQKVGIRMRSALVAMIYEKGLTLSCQSKQGRTSGE 422
Query: 374 IINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNT 433
IIN + VD ERIG+F Y+H W++ +QV LAL ILY+NLG A + AAL +TI VM+ N
Sbjct: 423 IINFMTVDAERIGNFSWYMHDPWMVLLQVGLALWILYRNLGLA-SIAALVATIIVMLINF 481
Query: 434 PLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFXXXXXXXXEIERDSLKK 493
P QERF +MEAKD+R+K+TSE L++MR+LKL WE +F + E LKK
Sbjct: 482 PFGRMQERFQEKLMEAKDSRMKSTSEILRNMRILKLQGWEMKFLSKIFDLRKSEEGWLKK 541
Query: 494 YLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELI 553
Y+Y + I+F+FW +PTLVSV TFG CILL PL SG +LSALATFRILQEPIYNLP+ I
Sbjct: 542 YVYNSAVISFVFWGAPTLVSVSTFGACILLGIPLESGKILSALATFRILQEPIYNLPDTI 601
Query: 554 SMIAQTKVSLYRIQEFIKEDNQKKPITEPTSK-ASDVAIDIEAGEYAWDAREENFKKPTI 612
SMI QTKVSL R+ ++ DN + I E K +SDVA+++ +WD N PT+
Sbjct: 602 SMIVQTKVSLDRLASYLCLDNLQPDIVERLPKGSSDVAVEVINSTLSWDVSSSN---PTL 658
Query: 613 KLTDKMKIMXXXXXXXXXXXXXXXXXXXXXXXXEIPRISGAAIKVHGKKAYVPQSSWIQT 672
K + K+ E+P++SG+ +KV G KAYV QS WIQ+
Sbjct: 659 KDIN-FKVFPGMKVAVCGTVGSGKSSLLSSLLGEVPKVSGS-LKVCGTKAYVAQSPWIQS 716
Query: 673 GTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732
G I +NILFGK M + Y++VLE C+L++D+E+ + GD +V+GERGINLSGGQKQRIQ+A
Sbjct: 717 GKIEDNILFGKPMERERYDKVLEACSLSKDLEILSFGDQTVIGERGINLSGGQKQRIQIA 776
Query: 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVM 792
RA+Y ++D+Y+FDDPFSAVDAHTG+HLFK+ L+GLL K+V+Y THQ+EFL AADL+LVM
Sbjct: 777 RALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLCSKSVIYVTHQVEFLPAADLILVM 836
Query: 793 KDGKIEQSGKYEDLIADQNSELVRQMKAHRKSL---DQV--NPPQEDKCLSR---VPCQM 844
KDG+I Q+GKY D++ + ++ + + AH+++L D V N E L + +
Sbjct: 837 KDGRISQAGKYNDIL-NSGTDFMELIGAHQEALAVVDSVDANSVSEKSALGQENVIVKDA 895
Query: 845 SQITEERFARPISCGEFSG----RS--QDEDTELGRVKWTVYSAFITLVYKGALVPVILL 898
+ E+ ++ + + R Q+E+ E G V VY +ITL Y GALVP ILL
Sbjct: 896 IAVDEKLESQDLKNDKLESVEPQRQIIQEEEREKGSVALDVYWKYITLAYGGALVPFILL 955
Query: 899 CQVLFQALQMGSNYWIAWAT 918
QVLFQ LQ+GSNYW+AWAT
Sbjct: 956 GQVLFQLLQIGSNYWMAWAT 975
|
|
| TAIR|locus:2020235 ABCC5 "ATP-binding cassette C5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1414 (502.8 bits), Expect = 1.8e-262, Sum P(2) = 1.8e-262
Identities = 293/681 (43%), Positives = 434/681 (63%)
Query: 162 PLLVLLCFNATYACC---CARDPSDLDIPLLREEDDEFLCKNISTFASAGVLSKITFHWL 218
P L LCF A R SDL PLL EE E C ++ +++AG++S IT WL
Sbjct: 187 PALGFLCFLAWRGVSGIQVTRSSSDLQEPLLVEE--EAACLKVTPYSTAGLVSLITLSWL 244
Query: 219 NQLFQRGRIQKLELLHIPPIPQSETANDASSLLEESLRKQKTDATSLPQVIIHAV----W 274
+ L G + LEL IP + + A + +L+ + ++ K++ S P + A+ W
Sbjct: 245 DPLLSAGSKRPLELKDIPLLAPRDRAKSSYKVLKSNWKRCKSENPSKPPSLARAIMKSFW 304
Query: 275 KSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLT 334
K A NA FAG+NT+ SY+GP+LI+ FV +L GK H G VLA +F +K +E++T
Sbjct: 305 KEAACNAVFAGLNTLVSYVGPYLISYFVDYLGGKEIFP--HEGYVLAGIFFTSKLIETVT 362
Query: 335 QRQWYFGANRIGIRVRSALTVLIYKRSM---AIKFAGPSSGIIINMINVDVERIGDFFLY 391
RQWY G + +G+ VRSALT ++Y++ + +I +SG I+N + VDV+RIGD+ Y
Sbjct: 363 TRQWYMGVDILGMHVRSALTAMVYRKGLKLSSIAKQNHTSGEIVNYMAVDVQRIGDYSWY 422
Query: 392 IHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKD 451
+H IW+LP+Q+ LAL ILYK++G A A A L +TI ++ PLA QE + +M AKD
Sbjct: 423 LHDIWMLPMQIVLALAILYKSVGIA-AVATLVATIISILVTIPLAKVQEDYQDKLMTAKD 481
Query: 452 ARIKATSETLKSMRVLKLLSWEQEFXXXXXXXXEIERDSLKKYLYTCSAIAFLFWASPTL 511
R++ TSE L++MRVLKL +WE + E E L+K LY+ + + F+FW+SP
Sbjct: 482 ERMRKTSECLRNMRVLKLQAWEDRYRVRLEEMREEEYGWLRKALYSQAFVTFIFWSSPIF 541
Query: 512 VSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIK 571
V+ +TF I L T LT+G VLSALATFRILQEP+ N P+L+SM+AQTKVSL RI F++
Sbjct: 542 VAAVTFATSIFLGTQLTAGGVLSALATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQ 601
Query: 572 EDNQKKPITEPTSKA-SDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMXXXXXXXXX 630
E+ ++ T + S++AI+I+ G + WD +PT+ +MK+
Sbjct: 602 EEELQEDATVVIPRGLSNIAIEIKDGVFCWDPFSS---RPTLSGI-QMKVEKGMRVAVCG 657
Query: 631 XXXXXXXXXXXXXXXEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFY 690
EIP+ISG +++ G YV QS+WIQ+G I ENILFG M ++ Y
Sbjct: 658 TVGSGKSSFISCILGEIPKISGE-VRICGTTGYVSQSAWIQSGNIEENILFGSPMEKTKY 716
Query: 691 EEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSA 750
+ V++ C+L +DIE+++ GD +++GERGINLSGGQKQR+QLARA+Y ++D+Y+ DDPFSA
Sbjct: 717 KNVIQACSLKKDIELFSHGDQTIIGERGINLSGGQKQRVQLARALYQDADIYLLDDPFSA 776
Query: 751 VDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQ 810
+DAHTG+ LF+ ++ L++KTV++ THQ+EFL AADL+LV+K+G+I QSGKY+DL+
Sbjct: 777 LDAHTGSDLFRDYILSALAEKTVVFVTHQVEFLPAADLILVLKEGRIIQSGKYDDLL-QA 835
Query: 811 NSELVRQMKAHRKSLDQVNPP 831
++ + AH ++++ ++ P
Sbjct: 836 GTDFKALVSAHHEAIEAMDIP 856
|
|
| TAIR|locus:2090039 ABCC6 "ATP-binding cassette C6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2502 (885.8 bits), Expect = 5.4e-260, P = 5.4e-260
Identities = 520/1186 (43%), Positives = 733/1186 (61%)
Query: 152 EAKAVDFVSLPLLVLLCFNATYACCCARDPSD---LDI---PLLREEDDEFLCKNISTFA 205
E +V FV + LV +C C C + +D+ PLL + + + F+
Sbjct: 152 EMVSVHFV-ISDLVGVCAGLFLCCSCLWKKGEGERIDLLKEPLLSSAESSDNEEVTAPFS 210
Query: 206 SAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQSETANDASSLLEESLR----KQKTD 261
AG+LS+++F W++ L G + +++ +P + +S+T + L +++
Sbjct: 211 KAGILSRMSFSWMSPLITLGNEKIIDIKDVPQLDRSDTTESLFWIFRSKLEWDDGERRIT 270
Query: 262 ATSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLA 321
L + + +VW+ + L+A A V T++ Y+ P+L+ NFV +L+G + + Y VL
Sbjct: 271 TFKLIKALFLSVWRDIVLSALLAFVYTVSCYVAPYLMDNFVQYLNGNRQYKNQGY--VLV 328
Query: 322 SVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKF---AGPSSGIIINMI 378
+ F AK VE TQRQW+F + G+ +RS L +IY++ + + G +SG IIN++
Sbjct: 329 TTFFVAKLVECQTQRQWFFRGQKAGLGMRSVLVSMIYEKGLTLPCHSKQGHTSGEIINLM 388
Query: 379 NVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANR 438
VD +RI F ++H W+L +QV LAL ILYK+LG + AA +TI VM++N P A
Sbjct: 389 AVDADRISAFSWFMHDPWILVLQVSLALWILYKSLGLG-SIAAFPATILVMLANYPFAKL 447
Query: 439 QERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFXXXXXXXXEIERDSLKKYLYTC 498
+E+F S +M++KD R+K TSE L +M++LKL WE +F IE LKK++Y
Sbjct: 448 EEKFQSSLMKSKDNRMKKTSEVLLNMKILKLQGWEMKFLSKILELRHIEAGWLKKFVYNS 507
Query: 499 SAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQ 558
SAI + WA+P+ +S FG C+LLK PL SG +L+ALATFRILQ PIY LPE ISMI Q
Sbjct: 508 SAINSVLWAAPSFISATAFGACLLLKIPLESGKILAALATFRILQGPIYKLPETISMIVQ 567
Query: 559 TKVSLYRIQEFI-KEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDK 617
TKVSL RI F+ +D Q+ + S +S++A++I G ++WD ++ PT++ +
Sbjct: 568 TKVSLNRIASFLCLDDLQQDVVGRLPSGSSEMAVEISNGTFSWD---DSSPIPTLRDMN- 623
Query: 618 MKIMXXXXXXXXXXXXXXXXXXXXXXXXEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRE 677
K+ E+P+ISG +KV G+KAY+ QS WIQ+G + E
Sbjct: 624 FKVSQGMNVAICGTVGSGKSSLLSSILGEVPKISGN-LKVCGRKAYIAQSPWIQSGKVEE 682
Query: 678 NILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS 737
NILFGK M + +Y+ VLE C+LN+D+E+ D +V+GERGINLSGGQKQRIQ+ARA+Y
Sbjct: 683 NILFGKPMEREWYDRVLEACSLNKDLEILPFHDQTVIGERGINLSGGQKQRIQIARALYQ 742
Query: 738 NSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKI 797
++D+Y+FDDPFSAVDAHTG+HLFK+ L+GLL KTV+Y THQ+EFL ADL+LVMKDGKI
Sbjct: 743 DADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRHKTVIYVTHQVEFLPEADLILVMKDGKI 802
Query: 798 EQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQM-SQITEERFARPI 856
Q+GKY +++ D ++ + + AH ++L ++ + + +++ + +
Sbjct: 803 TQAGKYHEIL-DSGTDFMELVGAHTEALATIDSCETGYASEKSTTDKENEVLHHKEKQEN 861
Query: 857 -SCGEFSGRS-QDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWI 914
S + SG+ Q+E+ E G+V +TVY ++ L Y GA++P+IL+ QVLFQ L +GSNYW+
Sbjct: 862 GSDNKPSGQLVQEEEREKGKVGFTVYKKYMALAYGGAVIPLILVVQVLFQLLSIGSNYWM 921
Query: 915 AWAT----DEKRKVSREQLXXXXXXXXXXXXXXXXXRAVLLATIAIKTAQRLFLNMITSV 970
W T D + VS L RA+L+A K A LF M +
Sbjct: 922 TWVTPVSKDVEPPVSGFTLILVYVLLAVASSFCILIRALLVAMTGFKMATELFTQMHLRI 981
Query: 971 FRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGXXXXXXXXXXXXXXXXXXXWQVF 1030
FRA +SFFD+TP RILNR STDQS D +P + A WQV
Sbjct: 982 FRASMSFFDATPMGRILNRASTDQSVADLRLPGQFAYVAIAAINILGIIGVIVQVAWQVL 1041
Query: 1031 PLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLL 1090
+F+ ++ WY+ YYI+ ARELAR+ G ++P++HHFSE+++G TTIR F+QE RF
Sbjct: 1042 IVFIPVVAACAWYRQYYISAARELARLAGISRSPVVHHFSETLSGITTIRSFDQEPRFRG 1101
Query: 1091 RSHSLIDDYSCVTFHNCGTMEWLCXXXXXXXXXXXXXXXXXXXXXPRSAIDPSLAGLAAT 1150
L D YS + FH+ G MEWLC P I+PSLAGLA T
Sbjct: 1102 DIMRLSDCYSRLKFHSTGAMEWLCFRLELLSTFAFASSLVILVSAPEGVINPSLAGLAIT 1161
Query: 1151 YGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIEL 1210
Y LNLN LQA +IW LC++ENKMISVER+LQ+TNIPSE PLVI+ +RP WPS G+I +
Sbjct: 1162 YALNLNTLQATLIWTLCDLENKMISVERMLQYTNIPSEPPLVIETTRPEKSWPSRGEITI 1221
Query: 1211 ENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDG 1270
NL V+Y P LPMVL G+TCTFPG K G+VGRTG GKSTLIQ LFR+VEP+ G I IDG
Sbjct: 1222 CNLQVRYGPHLPMVLHGLTCTFPGGLKTGIVGRTGCGKSTLIQTLFRIVEPAAGEIRIDG 1281
Query: 1271 VDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWE 1316
++I IGL DLRSRLSIIPQDP +F+GT+R+NLDPLE+++D +IWE
Sbjct: 1282 INILSIGLHDLRSRLSIIPQDPTMFEGTIRSNLDPLEEYTDDQIWE 1327
|
|
| TAIR|locus:2090049 ABCC7 "ATP-binding cassette C7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2451 (867.9 bits), Expect = 1.4e-254, P = 1.4e-254
Identities = 505/1153 (43%), Positives = 714/1153 (61%)
Query: 178 ARDPSDLDIPLLREEDDEFLCKNISTFASAGVLSKITFHWLNQLFQRGRIQKLELLHIPP 237
A + + L + EDDE ++ F++AG LS ++F W++ L G + ++ +P
Sbjct: 210 AESSAATSVQLDKAEDDEV----VTPFSNAGFLSHVSFSWMSPLIVLGNEKIIDSEDVPQ 265
Query: 238 IPQSETANDASSLLEESLR----KQKTDATSLPQVIIHAVWKSLALNAAFAGVNTIASYI 293
+ S+ A + L +++ L + + +VW+ + L+ FA V T++ Y+
Sbjct: 266 VDNSDRAEKLFWIFRSKLEWDDGERRITTYKLIKALFFSVWRDILLSTLFAFVYTVSCYV 325
Query: 294 GPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSAL 353
P+L+ FV +L+G+ +S+ G+VL + F AK VE +R WYF + GI +RS L
Sbjct: 326 APYLMDTFVQYLNGQRQYSNQ--GVVLVTTFFVAKLVECQARRNWYFRLQKAGIGMRSVL 383
Query: 354 TVLIYKRSMAIKF---AGPSSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILY 410
+IY++ + + G +SG IIN++ VD ERI F Y+H W+L +Q+ LAL+ILY
Sbjct: 384 VSMIYEKGLTLPCYSKQGHTSGEIINLMTVDAERISAFSWYMHDPWILVLQISLALLILY 443
Query: 411 KNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLL 470
++LG + AA +T VM+ N PLA +E+F +ME+KD R+K TSE L +MR+LKL
Sbjct: 444 RSLGLG-SIAAFAATFLVMLGNIPLAKLEEKFQGNLMESKDNRMKKTSEALLNMRILKLQ 502
Query: 471 SWEQEFXXXXXXXXEIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSG 530
WE +F IE LKK++Y +AI+ + WA+P+ VS FG C+LLK PL SG
Sbjct: 503 GWEMKFLHKILDLRGIEAGWLKKFVYNSAAISSVLWAAPSFVSATAFGACMLLKIPLESG 562
Query: 531 AVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFI-KEDNQKKPITEPTSKASDV 589
+++ALATFRILQ PIY LP+ ISMI QTKVSL RI F+ +D Q+ + S +S +
Sbjct: 563 KIIAALATFRILQTPIYKLPDTISMIVQTKVSLDRIATFLCLDDLQQDGMERLPSGSSKM 622
Query: 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMXXXXXXXXXXXXXXXXXXXXXXXXEIPR 649
+++ G ++WD ++ PT+K + KI E+P+
Sbjct: 623 DVEVSNGAFSWD---DSSPIPTLK-DIRFKIPHGMNIAICGTVGSGKSSLLSSILGEVPK 678
Query: 650 ISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADG 709
ISG +KV G+KAY+ QS WIQ+G + ENILFGK M++ +Y+ VLE C+LN+D+E++
Sbjct: 679 ISGN-LKVCGRKAYIAQSPWIQSGKVEENILFGKPMQREWYQRVLEACSLNKDLEVFPFR 737
Query: 710 DLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS 769
D +V+GERGINLSGGQKQRIQ+ARA+Y ++D+Y+FDDPFSAVDAHTG+HLFK+ L+GLL
Sbjct: 738 DQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLR 797
Query: 770 QKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVN 829
KTV+Y THQLEFL ADL+LVMKDG+I Q+GKY +++ + ++ + + AH +L V+
Sbjct: 798 NKTVIYVTHQLEFLPEADLILVMKDGRITQAGKYNEIL-ESGTDFMELVGAHTDALAAVD 856
Query: 830 PPQEDKCLSR-VPCQMSQITEERFARPISCGEFSGRS-QDEDTELGRVKWTVYSAFITLV 887
++ ++ + S+++ + + G+ Q+E+ E G+V +TVY ++ L
Sbjct: 857 SYEKGSASAQSTTSKESKVSNDEEKQEEDLPSPKGQLVQEEEREKGKVGFTVYQKYMKLA 916
Query: 888 YKGALVPVILLCQVLFQALQMGSNYWIAWAT----DEKRKVSREQLXXXXXXXXXXXXXX 943
Y GALVP+IL+ Q+LFQ L +GSNYW+AW T D K VS L
Sbjct: 917 YGGALVPIILVVQILFQVLNIGSNYWMAWVTPVSKDVKPLVSGSTLILVYVFLATASSFC 976
Query: 944 XXXRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPY 1003
RA+L A K A LF M +FRA +SFFD+TP RILNR STDQS VD +P
Sbjct: 977 ILVRAMLSAMTGFKIATELFNQMHFRIFRASMSFFDATPIGRILNRASTDQSAVDLRLPS 1036
Query: 1004 RLAGXXXXXXXXXXXXXXXXXXXWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKA 1063
+ + WQV +F+ ++ WY+ YYI+ ARELAR+ G ++
Sbjct: 1037 QFSNLAIAAVNILGIIGVMGQVAWQVLIVFIPVIAACTWYRQYYISAARELARLSGISRS 1096
Query: 1064 PILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCXXXXXXXXX 1123
P++ HFSE+++G TTIR F+QE RF L D YS + FH MEWLC
Sbjct: 1097 PLVQHFSETLSGITTIRSFDQEPRFRTDIMRLNDCYSRLRFHAISAMEWLCFRLDLLSTV 1156
Query: 1124 XXXXXXXXXXXXPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFT 1183
P I+PS AGLA TY LNLN LQA +IW LC++ENKMISVER+LQ+
Sbjct: 1157 AFALSLVILVSVPEGVINPSFAGLAVTYALNLNSLQATLIWTLCDLENKMISVERMLQYI 1216
Query: 1184 NIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGR 1243
+IPSE LVI+++RP WP G+I + NL V+Y P LPMVL+G+TCTF G K G+VGR
Sbjct: 1217 DIPSEPSLVIESTRPEKSWPCRGEITICNLQVRYGPHLPMVLRGLTCTFRGGLKTGIVGR 1276
Query: 1244 TGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNL 1303
TG GKSTLIQ LFR+VEP+ G I IDG++I IGL DLRSRLSIIPQ+P +F+GTVR+NL
Sbjct: 1277 TGCGKSTLIQTLFRIVEPAAGEIRIDGINILTIGLHDLRSRLSIIPQEPTMFEGTVRSNL 1336
Query: 1304 DPLEQHSDQEIWE 1316
DPLE+++D +IWE
Sbjct: 1337 DPLEEYADDQIWE 1349
|
|
| TAIR|locus:2081755 ABCC14 "ATP-binding cassette C14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1092 (389.5 bits), Expect = 5.9e-210, Sum P(2) = 5.9e-210
Identities = 247/699 (35%), Positives = 382/699 (54%)
Query: 158 FVSLPLL-VLLCFNATYACCCARDPSDLDIPLLREEDDEFLCKNISTFASAGVLSKITFH 216
F+S PL VLL + + S++ P + +N+S +ASA +SK +
Sbjct: 203 FISFPLTAVLLLVSIKGSTGVVVTTSNVTAPAKSNDVVVEKSENVSLYASASFISKTFWL 262
Query: 217 WLNQLFQRGRIQKLELLHIPPIPQSETANDASSLLEESLRK-QKTDATSLPQVIIHAVWK 275
W+N L ++G L L +P + A ++L E K Q+ + +I WK
Sbjct: 263 WMNPLLRKGYKSPLNLDQVPTLSPEHRAEKLATLFESKWPKPQENSRNPVRTTLIRCFWK 322
Query: 276 SLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQ 335
+A A A + Y+GP LI +FV F SGK S Y LVL + L AK VE L+
Sbjct: 323 EIAFTAVLAIIRLSVIYVGPVLIQSFVDFTSGKRSSPSQGYYLVL--ILLIAKFVEVLST 380
Query: 336 RQWYFGANRIGIRVRSALTVLIYKRSMAIK-FAGPSSGI--IINMINVDVERIGDFFLYI 392
Q+ F + ++G+ +RS L +YK+ + + A + G+ I+N + VD +++ D L +
Sbjct: 381 HQFNFNSQKLGMLIRSTLITALYKKGLKLTGSARQNHGVGQIVNYMAVDAQQLSDMMLQL 440
Query: 393 HRIWLLPVQVFLALVILYKNLGAAPAFAALFST-IFVMVSNTPLANRQERFHSMIMEAKD 451
H IWL+P+QV A+V+LY LG + + T IFV + N + +F S++M +D
Sbjct: 441 HAIWLMPLQVAAAIVLLYNTLGPSVVTTVIGLTGIFVFILLGTKRNNRYQF-SLMMN-RD 498
Query: 452 ARIKATSETLKSMRVLKLLSWEQEFXXXXXXXXEIERDSLKKYLYTCSAIAFLFWASPTL 511
+R+KAT+E L MRV+K +WE F E+E L K+LY+ + + W++P L
Sbjct: 499 SRMKATNEMLNYMRVIKFQAWEDHFNERILKFREMEFGWLSKFLYSIAGNIIVLWSTPVL 558
Query: 512 VSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIK 571
+S +TF + L L +G V + F+ILQEPI P+ + ++Q +SL R+ ++
Sbjct: 559 ISALTFTTAVFLGVKLDAGTVFTTTTIFKILQEPIRTFPQSMISLSQAMISLGRLDAYMM 618
Query: 572 EDNQKKPITEPTSKAS-DVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMXXXXXXXXX 630
+ E + +VA++I+ G ++WD ++ +P I+ + ++
Sbjct: 619 SRELSEETVERSQGCDGNVAVEIKDGSFSWDDEDD---EPAIENIN-FEVKKGELAAIVG 674
Query: 631 XXXXXXXXXXXXXXXEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFY 690
E+ ++SG ++V G AYV Q+SWIQ GT+++NILFG M +S Y
Sbjct: 675 TVGSGKSSLLASVLGEMHKLSGK-VRVCGTTAYVAQTSWIQNGTVQDNILFGLPMNRSKY 733
Query: 691 EEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSA 750
EVL+ C L +D+++ GD + +GERGINLSGGQKQRIQLARAVY SDVY+ DD FSA
Sbjct: 734 NEVLKVCCLEKDMQIMEFGDQTEIGERGINLSGGQKQRIQLARAVYQESDVYLLDDVFSA 793
Query: 751 VDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQ 810
VDAHTG+ +FK+C+ G L KT+L THQ++FL D +LVM+DG I QSGKY++L++
Sbjct: 794 VDAHTGSDIFKKCVRGALKGKTILLVTHQVDFLHNVDRILVMRDGMIVQSGKYDELVSS- 852
Query: 811 NSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQITE 849
+ + AH S++ V + VP S IT+
Sbjct: 853 GLDFGELVAAHETSMELVEAGSASATAANVP-MASPITQ 890
|
|
| TAIR|locus:2043268 ABCC4 "ATP-binding cassette C4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1056 (376.8 bits), Expect = 2.2e-203, Sum P(2) = 2.2e-203
Identities = 235/649 (36%), Positives = 358/649 (55%)
Query: 200 NISTFASAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQSETANDASSLLEESLRKQK 259
N+S +ASA V SK + W+N L +G L L +P + A + L E S K
Sbjct: 248 NVSLYASASVFSKTFWLWMNPLLSKGYKSPLTLEQVPTLSPEHKAERLALLFESSWPKPS 307
Query: 260 TDATS-LPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGL 318
+++ + ++ WK + A A V Y+GP LI +FV F SGK Y L
Sbjct: 308 ENSSHPIRTTLLRCFWKEILFTAILAIVRLGVMYVGPVLIQSFVDFTSGKRSSPWQGYYL 367
Query: 319 VLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIK-FAGPSSGI--II 375
VL + L AK VE LT Q+ F + ++G+ +RS L +YK+ + + A + G+ I+
Sbjct: 368 VL--ILLVAKFVEVLTTHQFNFDSQKLGMLIRSTLITALYKKGLKLTGSARQNHGVGQIV 425
Query: 376 NMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFST-IFVMVSNTP 434
N + VD +++ D L +H IWL+P+QV +ALV+LY +LGA+ A + T +FV +
Sbjct: 426 NYMAVDAQQLSDMMLQLHAIWLMPLQVTVALVLLYGSLGASVITAVIGLTGVFVFILLGT 485
Query: 435 LANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFXXXXXXXXEIERDSLKKY 494
N +F +M +D+R+KAT+E L MRV+K +WE F ++E L K+
Sbjct: 486 QRNNGYQFS--LMGNRDSRMKATNEMLNYMRVIKFQAWENHFNKRILKFRDMEFGWLSKF 543
Query: 495 LYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELIS 554
LY+ + + W++P L+S +TF + L L +G V + F+ILQEPI P+ +
Sbjct: 544 LYSIAGNIIVLWSTPVLISALTFATALALGVKLDAGTVFTTTTIFKILQEPIRTFPQSMI 603
Query: 555 MIAQTKVSLYRIQEFIKEDNQKKPITEPTSKAS-DVAIDIEAGEYAWDAREENFKKPTIK 613
++Q +SL R+ ++ + E + A+++ G ++WD E+N +P
Sbjct: 604 SLSQAMISLGRLDSYMMSKELSEDAVERALGCDGNTAVEVRDGSFSWDD-EDN--EPA-- 658
Query: 614 LTD-KMKIMXXXXXXXXXXXXXXXXXXXXXXXXEIPRISGAAIKVHGKKAYVPQSSWIQT 672
L+D K+ E+ RISG ++V G YV Q+SWI+
Sbjct: 659 LSDINFKVKKGELTAIVGTVGSGKSSLLASVLGEMHRISGQ-VRVCGSTGYVAQTSWIEN 717
Query: 673 GTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732
GT+++NILFG M + Y +VL C+L +D++M GD + +GERGINLSGGQKQRIQLA
Sbjct: 718 GTVQDNILFGLPMVREKYNKVLNVCSLEKDLQMMEFGDKTEIGERGINLSGGQKQRIQLA 777
Query: 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVM 792
RAVY DVY+ DD FSAVDAHTG+ +FK+C+ G L KTVL THQ++FL D +LVM
Sbjct: 778 RAVYQECDVYLLDDVFSAVDAHTGSDIFKKCVRGALKGKTVLLVTHQVDFLHNVDCILVM 837
Query: 793 KDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVP 841
+DGKI +SGKY++L++ + + AH S++ V + ++ P
Sbjct: 838 RDGKIVESGKYDELVSS-GLDFGELVAAHETSMELVEAGADSAAVATSP 885
|
|
| TAIR|locus:2077750 ABCC10 "ATP-binding cassette C10" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1936 (686.6 bits), Expect = 1.2e-201, Sum P(2) = 1.2e-201
Identities = 436/1135 (38%), Positives = 651/1135 (57%)
Query: 201 ISTFASAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQSETANDASSLLEESLRKQK- 259
+S FA AG+ S ++F WLN L +RG ++ LE IP + + E A SL EE+L +QK
Sbjct: 204 VSQFAKAGLFSTLSFWWLNSLIKRGNVKDLEEEDIPELRKEERAETCYSLFEENLIEQKR 263
Query: 260 ----TDATSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYH 315
+ S+ +V + VW+ L + FA + +A GP L+ F+ G ++S+
Sbjct: 264 RLGSSCQPSILKVTVLCVWRELLTSGFFAFMKIVAVSAGPLLLNAFILVAEG---NASFR 320
Query: 316 Y-GLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAGP---SS 371
Y GLVLA + F+K +ESL+QRQWYF +G+RVRS LT I K+ + + + S
Sbjct: 321 YEGLVLAVLLFFSKMIESLSQRQWYFRCRIVGLRVRSLLTAAINKKQLRLNNSSRLIHSG 380
Query: 372 GIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVS 431
I+N VD RIG+F + H++W Q+ +AL IL+ ++G A F+AL I ++
Sbjct: 381 SEIMNYATVDAYRIGEFPYWFHQLWTTSFQLLIALGILFHSVGVA-TFSALAVIILTVLC 439
Query: 432 NTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFXXXXXXXXEIERDSL 491
N P+A Q +F S +M ++D R+KA +E+L +M+VLKL +WE F IE SL
Sbjct: 440 NAPIAKLQNKFQSELMTSQDERLKACNESLVNMKVLKLYAWESHFKKVIEKLRNIELKSL 499
Query: 492 KKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPE 551
K + A LFW+SP VS TF C L PL + V + +AT R++Q+P+ +P+
Sbjct: 500 KAVQMRKAYNAVLFWSSPVFVSAATFATCYFLDIPLRASNVFTFVATLRLVQDPVRMIPD 559
Query: 552 LISMIAQTKVSLYRIQEFIKEDNQK--KPITEPTSKASDVAIDIEAGEYAWDAREENFKK 609
+I + Q KV+ RI F++ + + + S+ + AI I++ ++W+ E+ K
Sbjct: 560 VIGVTIQAKVAFSRIATFLEAPELQGGERRRKQRSEGNQNAIIIKSASFSWE--EKGSTK 617
Query: 610 PTIKLTDKMKIMXXXXXXXXXXXXXXXXXXXXXXXXEIPRISGAAIKVHGKKAYVPQSSW 669
P ++ +++ E P +SG I +G AYV Q++W
Sbjct: 618 PNLRNVS-LEVKFGEKVAVCGEVGSGKSTLLAAILGETPCVSGT-IDFYGTIAYVSQTAW 675
Query: 670 IQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729
IQTGTIR+NILFG M + Y E ++ +L++D+E+ DGD + +GERG+NLSGGQKQRI
Sbjct: 676 IQTGTIRDNILFGGVMDEHRYRETIQKSSLDKDLELLPDGDQTEIGERGVNLSGGQKQRI 735
Query: 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLV 789
QLARA+Y ++D+Y+ DDPFSAVDAHT + LF++ +M L+ K VL THQ++FL A D V
Sbjct: 736 QLARALYQDADIYLLDDPFSAVDAHTASSLFQEYVMDALAGKAVLLVTHQVDFLPAFDSV 795
Query: 790 LVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSL--DQV----NPPQEDKCLSRVPCQ 843
L+M DG+I ++ Y++L+A ++ + + AHR++ ++V NP + K ++RV
Sbjct: 796 LLMSDGEITEADTYQELLA-RSRDFQDLVNAHRETAGSERVVAVENPTKPVKEINRVISS 854
Query: 844 MSQITEERFARPISCGEFSGRSQDEDTELGRVKWTVYSAFITLVYKGALVPVIL-LCQVL 902
S++ + +R I + E+ E G Y ++ KG + I L QV
Sbjct: 855 QSKVLKP--SRLI---------KQEEREKGDTGLRPYIQYMNQ-NKGYIFFFIASLAQVT 902
Query: 903 FQALQMGSNYWIAWATDEKRKVSREQLXXXXXXXXXXXXXXXXXRAVLLATIAIKTAQRL 962
F Q+ N W+A A + +VS +L R+V + + +K++ L
Sbjct: 903 FAVGQILQNSWMA-ANVDNPQVSTLKLILVYLLIGLCSVLCLMVRSVCVVIMCMKSSASL 961
Query: 963 FLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGXXXXXXXXXXXXXXX 1022
F ++ S+FRAP+SF+DSTP RIL+R S+D S VD D+P+ L
Sbjct: 962 FSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDVPFGLIFVVASSVNTGCSLGVL 1021
Query: 1023 XXXXWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCF 1082
WQV + + ++ ++ Q YY TA+EL R+ GT ++ + +H +ES+AGA TIR F
Sbjct: 1022 AIVTWQVLFVSVPMVYLAFRLQKYYFQTAKELMRINGTTRSYVANHLAESVAGAITIRAF 1081
Query: 1083 NQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCXXXXXXXXXXXXXXXXXXXXXPRSAIDP 1142
++E RF +S +LID + FH+ EWL P
Sbjct: 1082 DEEERFFKKSLTLIDTNASPFFHSFAANEWLIQRLETVSAIVLASTAFCMILLPTGTFSS 1141
Query: 1143 SLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEW 1202
G+A +YGL+LN+ + + N C + N +ISVER+ Q+T++ EAP VI+ +RP W
Sbjct: 1142 GFIGMALSYGLSLNMGLVYSVQNQCYLANWIISVERLNQYTHLTPEAPEVIEETRPPVNW 1201
Query: 1203 PSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPS 1262
P +G++E+ +L ++Y P+VLKGI+CTF G KIG+VGRTGSGK+TLI ALFR+VEP
Sbjct: 1202 PVTGRVEISDLQIRYRRESPLVLKGISCTFEGGHKIGIVGRTGSGKTTLISALFRLVEPV 1261
Query: 1263 GGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEV 1317
GG+I++DGVDIS IG+ DLRSR IIPQDP LF GTVR NLDPL QHSD EIWEV
Sbjct: 1262 GGKIVVDGVDISKIGVHDLRSRFGIIPQDPTLFNGTVRFNLDPLCQHSDAEIWEV 1316
|
|
| DICTYBASE|DDB_G0284867 abcC8 "ABC transporter C family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 894 (319.8 bits), Expect = 1.1e-160, Sum P(3) = 1.1e-160
Identities = 205/642 (31%), Positives = 338/642 (52%)
Query: 201 ISTFASAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQSETANDASSLLEESLRKQ-K 259
IS +A + S++TF W+N + +G + LE+ +P + + + + S E++ +Q K
Sbjct: 203 ISKEVNANLFSRLTFWWINSVLVKGHKKALEISDVPTLGEIDQSILLSEKFEKAWEEQLK 262
Query: 260 TDATSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLV 319
SLP + A + A F + + ++GP L+ + F+ + + GL+
Sbjct: 263 KPNPSLPWALAKAFGPHFYIAALFKIIQDLLIFVGPTLLKRVLGFVESRDGSQDTYDGLI 322
Query: 320 LASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFA-GPSSGIIINMI 378
A ++ A V+SL Q++ R+G+ +RSA+ +YK+++ G + G I+N++
Sbjct: 323 YALLYFLAPVVQSLLLHQYFHRCYRVGMWLRSAVVTAVYKKALKTSLREGTTIGEIVNLM 382
Query: 379 NVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANR 438
+VD ++ D Y+H IW P+Q+ ++LV+LY+ L A+ FA L + ++ N ++N
Sbjct: 383 SVDAQKFMDLCPYLHMIWSAPLQLAISLVLLYRILNAS-VFAGLGIMLVMIPINLAISNL 441
Query: 439 QERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFXXXXXXXXEIERDSLKKYLYTC 498
++ ++ M+ KD R KA +E L ++V+KL SWEQ F E D +K Y
Sbjct: 442 AKKRQTISMKLKDRRTKAVNEVLNGIKVIKLYSWEQSFMDHVNEIRNKELDVMKAIKYI- 500
Query: 499 SAIAFLFWA-SPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIA 557
+ L W+ SP VSV TF V IL L++ AL+ F ++Q PI LP ++S I
Sbjct: 501 QGFSLLLWSMSPVFVSVSTFTVYILTGQVLSATQAFPALSLFNVMQFPINMLPSVVSSII 560
Query: 558 QTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDK 617
+ VS+ R+Q+F+ + + + E +A+ I+ W E N KP + +
Sbjct: 561 EASVSVARLQKFLLKKDLDPNVVEHHINEPGIAVKIDNATLEW---EPN--KPILHDIN- 614
Query: 618 MKIMXXXXXXXXXXXXXXXXXXXXXXXXEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRE 677
+ I ++ + G + V+G A V Q +WIQ T++
Sbjct: 615 LTIKKGELVAIVGQVGSGKSSIVSSLVGDLDKTKGT-VAVNGSVALVSQQAWIQNATLKN 673
Query: 678 NILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS 737
NILF K++ Q Y+ V++ C L DI++ GD + +GE+GINLSGGQKQR+ +ARAVY+
Sbjct: 674 NILFAKELNQDKYQSVVQACCLEPDIKILPGGDQTEIGEKGINLSGGQKQRVSIARAVYN 733
Query: 738 NSDVYIFDDPFSAVDAHTGTHLFKQCLM---GLLSQKTVLYTTHQLEFLDAADLVLVMKD 794
N+D+YIFDDP SAVDAH G +FK L G+L KT + TH + +L D +++MKD
Sbjct: 734 NADIYIFDDPLSAVDAHVGKAIFKNVLSNQDGILCNKTRILVTHAVHYLPYVDRIILMKD 793
Query: 795 GKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQE-DK 835
G+I + G + LI + S M +H + Q+ Q DK
Sbjct: 794 GRIVEEGDFNTLI-EAGSHFTELM-SHDEQQQQLQQQQAPDK 833
|
|
| UNIPROTKB|F1SK59 F1SK59 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1376 (489.4 bits), Expect = 3.0e-144, Sum P(2) = 3.0e-144
Identities = 339/1085 (31%), Positives = 561/1085 (51%)
Query: 263 TSLPQVIIHAVWKS----LALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGL 318
T P ++ A+W + L A F + S+ P ++ + F + D YG
Sbjct: 103 TRKPSLLC-ALWNTFKFVLIQVALFKVFADVLSFTSPLIMKQMIIFCERRLDFGWSGYGY 161
Query: 319 VLAS-VFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAGP---SSGII 374
LA V +F +T+ + Q+ F ++++A+ LIYK++M + S+G I
Sbjct: 162 ALALFVVVFLQTL--ILQQYQRFNI-LTSAKIKTAVIGLIYKKAMLLSNVSRRTFSTGEI 218
Query: 375 INMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTP 434
IN+++ D +++ + I+ +W P Q+ +A+ +L++ LG A + +FV+ N
Sbjct: 219 INLMSADAQQLMELTANINLLWSAPFQILMAISLLWQELGPA-VLGGMAVLVFVVPINAL 277
Query: 435 LANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFXXXXXXXXEIERDSLKKY 494
+A R ++ + M+ KD +IK E L +++LKL +WE + E E + K
Sbjct: 278 VATRVKKLKNSQMKTKDKQIKLLKEILHGIKILKLYAWEPSYKKKIIENREQELEVHKSI 337
Query: 495 LYTCSAIAFLFWASPTLVSVITFGVCILLKTP--LTSGAVLSALATFRILQEPIYNLPEL 552
Y P LVS+ TFG+ LL LT+ V ++++ F IL+ P+++LP
Sbjct: 338 GYLAVFSMLTLTCIPFLVSLATFGIYFLLDEGNILTAAKVFTSMSLFNILRLPLFDLPTA 397
Query: 553 ISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTI 612
IS + QTK+SL R+++F+ + + P + T+ D AI ++WD E P +
Sbjct: 398 ISAVVQTKLSLGRLEDFLNSE-ELLPQSIETNYVGDHAIGFTNASFSWDKTEI----PVL 452
Query: 613 KLTDKMKIMXXXXXXXXXXXXXXXXXXXXXXXXEIPRISGAAIKVHGKKAYVPQSSWIQT 672
K + +KI E+ +I G ++ G AYV Q +WIQ
Sbjct: 453 KDLN-IKIPEGALVAIVGQVGSGKSSVLSAILGEMEKIKGV-VQRKGSMAYVSQQAWIQN 510
Query: 673 GTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732
+ENILFG M++ FYE VLE CAL D+E +GD + +GERG+N+SGGQK R+ LA
Sbjct: 511 CIFQENILFGSVMQRQFYERVLEACALLPDLEQLPNGDQTEIGERGVNISGGQKHRVSLA 570
Query: 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCL--MGLLSQKTVLYTTHQLEFLDAADLVL 790
RAVYS +D+Y+ DDP SAVD H G LF++ + G+L KT + TH L L DL++
Sbjct: 571 RAVYSGADIYLLDDPLSAVDVHVGKQLFEKVIGSSGILKNKTRILVTHNLTLLPQMDLIV 630
Query: 791 VMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQITEE 850
VM+ G++ Q G Y++L++ + L ++ + ++ + + ++ ++ E+
Sbjct: 631 VMEGGRVAQMGTYQELLS-KTKNLTNFLQIFSEQ-EKDHALRRVSIINSKTVLKDKVLEQ 688
Query: 851 RFARPI-SCGE-FSGRSQDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQ- 907
RP+ GE FS R E +G VK+++ ++ G L + + L Q L
Sbjct: 689 N-DRPLLDQGEHFSVRK--EKVPVGGVKFSIILKYLQAF--GWLWVWLNMALYLGQNLMG 743
Query: 908 MGSNYWIA-WATD--------EKRKVSREQLXXXXXXXXXXXXXXXXXRAVLLATIAIKT 958
+G N W++ WA + E++++ +L R+ + ++
Sbjct: 744 IGQNLWLSSWAKEAKHMSDFTERKQIRSNKLSIYGLLGLMQEALFVFIRSYTVMRGSLAA 803
Query: 959 AQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGXXXXXXXXXXX 1018
++ L ++ +V P+ FF+ P +I+NR + D +D Y L
Sbjct: 804 SRTLHAQLLDNVLHLPLQFFEINPIGQIINRFTKDMFIIDMRFHYYLRTWVNCTLDVIGT 863
Query: 1019 XXXXXXXXWQVFPLFLV-ILGISIWY---QAYYITTARELARMVGTRKAPILHHFSESIA 1074
FPLF++ ++ + Y Q YY+ ++R++ R+ G ++P++ HFSE+++
Sbjct: 864 VLVIVGA----FPLFILGVIPLVFLYFTIQRYYMASSRQIRRLAGASRSPVISHFSETLS 919
Query: 1075 GATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTME-WLCXXXXXXXXXXXXXXXXXXX 1133
G +TIR F E RF+ ++ L+++ + + F+N WL
Sbjct: 920 GVSTIRAFGHEQRFIRQNKELVNE-NLICFYNSVIANRWLSVRLEFLGNLMVLFAALLAV 978
Query: 1134 XXPRSAIDPSLAGLAATYGLNLNV-LQAWVIWNLCNVENKMISVERILQFTNIPSEAPLV 1192
S ID ++ GL+ +Y LN+ L WV C +E +S+ER+ ++ N+ EAP +
Sbjct: 979 LAGDS-IDSAIVGLSISYALNITQSLNFWVR-KACEIETNAVSIERVCEYENMDKEAPWI 1036
Query: 1193 IKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLI 1252
+ + RP +WP+ G +E N +Y L + L+ IT GE+KIG+VGRTG+GKSTL
Sbjct: 1037 M-SKRPPSQWPNKGIVEFINYQARYRDDLSLALQDITFQTHGEEKIGIVGRTGAGKSTLS 1095
Query: 1253 QALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQ 1312
LFR+VE SGG+ILIDG+DIS IGL DLR +L+IIPQDP+LF GT++ NLDPL+++SD
Sbjct: 1096 NCLFRIVERSGGKILIDGIDISTIGLHDLRGKLNIIPQDPVLFSGTLQMNLDPLDKYSDG 1155
Query: 1313 EIWEV 1317
E+WEV
Sbjct: 1156 ELWEV 1160
|
|
| UNIPROTKB|F1MIP7 ABCC2 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 776 (278.2 bits), Expect = 6.8e-143, Sum P(3) = 6.8e-143
Identities = 201/622 (32%), Positives = 323/622 (51%)
Query: 250 LLEESLRKQKTDATS--LPQV-IIHAVWKS--LALNAAFA--GVNTIASYIGPFLITNFV 302
+LEE+ +K+K T+ P+ ++ A++K+ + L +F V I +++ P L+ +
Sbjct: 287 VLEETKKKKKKSETTKDFPKSWLVKALFKTFYVILLKSFLLKVVYDILTFLNPQLLKLLI 346
Query: 303 SFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFG-ANRIGIRVRSALTVLIYKRS 361
+F + D Y + L S+ LF + Q+YF +G++VR+ + +YK++
Sbjct: 347 AFAN---DRGIYLWTGYLYSILLFVVALIQSFCLQYYFQLCFMLGMKVRTTIMASVYKKA 403
Query: 362 MAIKFAGPSS---GIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPA 418
+ + G +N+++VD +++ D +IH +W +Q+ LA+ L+ LG P+
Sbjct: 404 LTVSNRARKQYTIGETVNLMSVDAQKLMDVTNFIHLLWSNVLQIALAIYFLWAELG--PS 461
Query: 419 FAALFSTIFVMVS-NTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFX 477
A + +++ N LA R M+ KD+R+K +E L +++LK +WE F
Sbjct: 462 VLAGVGVMVILIPINGVLATRNRAIQVKNMKNKDSRLKIMNEILSGIKILKYFAWEPSFQ 521
Query: 478 XXXXXXXEIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTP--LTSGAVLSA 535
+ E +L ++ SAI FL + +P LVSVITF V +L+ + L + ++
Sbjct: 522 NQVHNLRKKELRNLLRFGQLQSAIMFLLYLTPVLVSVITFSVYVLVDSSNVLDAQKAFTS 581
Query: 536 LATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEA 595
+ F IL+ P+ LP LIS + Q VS R+++++ D+ ++D A+
Sbjct: 582 ITLFNILRFPMSMLPMLISSMLQASVSTERLEKYLGGDDLDTSAIRHDCNSADKAVQFSE 641
Query: 596 GEYAWDAREENFKKPTIKLTDKMKIMXXXXXXXXXXXXXXXXXXXXXXXXEIPRISGAAI 655
+ WD + TI+ + + IM E+ + G I
Sbjct: 642 ASFTWD----HDLGVTIQDVN-LDIMPGQLVAVVGTVGSGKSSLMSAMLGEMENVHGH-I 695
Query: 656 KVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVG 715
V G AYVPQ SWIQ GTI+ENILFG ++ + Y+ VLE CAL D+E+ GD++ +G
Sbjct: 696 TVKGSVAYVPQQSWIQNGTIKENILFGSELDEKKYQRVLEACALLPDLEVLPGGDMAEIG 755
Query: 716 ERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCL--MGLLSQKTV 773
E+GINLSGGQKQRI LARA Y NSD+YI DDP SAVDAH G H+F + L GLL KT
Sbjct: 756 EKGINLSGGQKQRISLARATYQNSDIYILDDPLSAVDAHVGKHIFNKVLGPNGLLKGKTR 815
Query: 774 LYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSL---DQ--V 828
+ TH + FL D ++V+ +G I + G Y L+A++ + +K K D+ V
Sbjct: 816 ILVTHSIHFLPQVDEIVVVGNGTIMEKGSYSTLLANKGL-FAKNLKTFVKQTGPEDEATV 874
Query: 829 NPPQEDKCLSRVPCQMSQITEE 850
N ED VP + +I E+
Sbjct: 875 NEDSEDDDCGLVP-SVEEIPED 895
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q9LK64 | AB3C_ARATH | 3, ., 6, ., 3, ., 4, 4 | 0.4812 | 0.9444 | 0.8315 | yes | no |
| O88563 | MRP3_RAT | No assigned EC number | 0.3079 | 0.9152 | 0.8015 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| gw1.VIII.1931.1 | multidrug resistance protein ABC transporter family (1361 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1333 | |||
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 0.0 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 0.0 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 0.0 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 1e-106 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 7e-96 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 3e-60 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 5e-57 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 7e-57 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 5e-56 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 6e-52 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 1e-48 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 2e-48 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 1e-44 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-41 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 1e-40 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 3e-38 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 4e-37 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 8e-34 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 4e-33 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 5e-32 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 5e-32 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 6e-32 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 4e-31 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 5e-31 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 1e-30 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-30 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 4e-30 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 3e-29 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 8e-28 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 2e-27 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 4e-27 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 7e-27 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 1e-26 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 3e-26 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 6e-26 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 3e-25 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 4e-25 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 4e-25 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 1e-24 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 1e-24 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 3e-24 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 2e-23 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 4e-23 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 4e-23 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 6e-23 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-22 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 4e-22 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 4e-22 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 3e-21 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 4e-21 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 6e-21 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 8e-21 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 8e-21 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 3e-20 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 4e-20 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 5e-20 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 6e-20 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 6e-20 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 6e-20 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 8e-20 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 1e-19 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 2e-19 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 2e-19 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 2e-19 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 2e-19 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 4e-19 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 6e-19 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 7e-19 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 7e-19 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 8e-19 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 1e-18 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 1e-18 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 1e-18 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 2e-18 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 2e-18 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 2e-18 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 3e-18 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 4e-18 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 5e-18 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 6e-18 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 6e-18 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 8e-18 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 8e-18 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 8e-18 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 1e-17 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 1e-17 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 3e-17 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 4e-17 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 5e-17 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 6e-17 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 7e-17 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 8e-17 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 9e-17 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 9e-17 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 1e-16 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 1e-16 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 1e-16 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 2e-16 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 3e-16 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 5e-16 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 5e-16 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 6e-16 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 1e-15 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 1e-15 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 1e-15 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 1e-15 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 2e-15 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 2e-15 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 2e-15 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 3e-15 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 3e-15 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 3e-15 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 4e-15 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 6e-15 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 1e-14 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 1e-14 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-14 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 2e-14 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 2e-14 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 2e-14 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 2e-14 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 3e-14 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 3e-14 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 3e-14 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 4e-14 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 4e-14 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 4e-14 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 4e-14 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 5e-14 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 5e-14 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 7e-14 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 7e-14 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 8e-14 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 8e-14 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 9e-14 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 1e-13 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 1e-13 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 2e-13 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 2e-13 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 3e-13 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-13 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 4e-13 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 4e-13 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 6e-13 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 6e-13 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 6e-13 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 7e-13 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 8e-13 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 8e-13 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 1e-12 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-12 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 1e-12 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 1e-12 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 2e-12 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 3e-12 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 3e-12 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 4e-12 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 4e-12 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 4e-12 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 4e-12 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 4e-12 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 4e-12 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 5e-12 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 5e-12 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 6e-12 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 6e-12 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 6e-12 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 7e-12 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 7e-12 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 1e-11 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 1e-11 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 1e-11 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 1e-11 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 1e-11 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 1e-11 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 2e-11 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 2e-11 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 2e-11 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 2e-11 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 2e-11 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 2e-11 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 3e-11 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 3e-11 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 4e-11 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 5e-11 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 5e-11 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 6e-11 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 7e-11 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 8e-11 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 9e-11 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 9e-11 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 1e-10 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 1e-10 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 1e-10 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 1e-10 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 1e-10 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 1e-10 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 1e-10 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 2e-10 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 2e-10 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 2e-10 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 2e-10 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 2e-10 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 3e-10 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-10 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 3e-10 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 3e-10 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 4e-10 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 4e-10 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 5e-10 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 6e-10 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 7e-10 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 7e-10 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 7e-10 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 7e-10 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 8e-10 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 8e-10 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 9e-10 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 9e-10 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 1e-09 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 1e-09 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 1e-09 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 1e-09 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 2e-09 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 2e-09 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-09 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 2e-09 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 2e-09 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-09 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 3e-09 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 3e-09 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 3e-09 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 3e-09 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 3e-09 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 3e-09 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 4e-09 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 4e-09 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 4e-09 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 4e-09 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 4e-09 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 4e-09 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 4e-09 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 6e-09 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 6e-09 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 6e-09 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 7e-09 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 7e-09 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 8e-09 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 8e-09 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 9e-09 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 1e-08 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 1e-08 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 1e-08 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 1e-08 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 1e-08 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 1e-08 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 1e-08 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 1e-08 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 1e-08 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 2e-08 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 2e-08 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 2e-08 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 2e-08 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 2e-08 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 2e-08 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 2e-08 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 2e-08 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 2e-08 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 2e-08 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 2e-08 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 2e-08 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 2e-08 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 2e-08 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 3e-08 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 3e-08 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 3e-08 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 3e-08 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 3e-08 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 3e-08 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 4e-08 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 4e-08 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 5e-08 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 5e-08 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 5e-08 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 5e-08 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 6e-08 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 6e-08 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 6e-08 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 6e-08 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 7e-08 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 7e-08 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 7e-08 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 8e-08 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 9e-08 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 1e-07 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 1e-07 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 1e-07 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 1e-07 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 1e-07 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 1e-07 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 1e-07 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 1e-07 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 1e-07 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 1e-07 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 2e-07 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 2e-07 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 2e-07 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 2e-07 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 2e-07 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 2e-07 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 3e-07 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 3e-07 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 3e-07 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 3e-07 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 3e-07 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 3e-07 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 3e-07 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 3e-07 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 4e-07 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 4e-07 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 4e-07 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 4e-07 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 4e-07 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 5e-07 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 5e-07 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 5e-07 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 5e-07 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 5e-07 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 6e-07 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 6e-07 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 6e-07 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 6e-07 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 6e-07 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 6e-07 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 6e-07 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 6e-07 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 7e-07 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 8e-07 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 1e-06 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 1e-06 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 1e-06 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-06 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 1e-06 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 1e-06 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 1e-06 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 2e-06 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-06 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 2e-06 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 2e-06 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 2e-06 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 2e-06 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 2e-06 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 2e-06 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 2e-06 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 2e-06 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 2e-06 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 3e-06 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 3e-06 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 3e-06 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 3e-06 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 3e-06 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 3e-06 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 3e-06 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 3e-06 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 4e-06 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 4e-06 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 4e-06 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 4e-06 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 5e-06 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 5e-06 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 5e-06 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 5e-06 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 6e-06 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 7e-06 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 7e-06 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 7e-06 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 7e-06 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 8e-06 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 8e-06 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 8e-06 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 9e-06 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 1e-05 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 1e-05 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 1e-05 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 1e-05 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 1e-05 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 1e-05 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 1e-05 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 1e-05 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 1e-05 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 1e-05 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 1e-05 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-05 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 2e-05 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 2e-05 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 2e-05 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 2e-05 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 2e-05 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 2e-05 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 2e-05 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 2e-05 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 2e-05 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 3e-05 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 3e-05 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 3e-05 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 3e-05 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 3e-05 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 3e-05 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 3e-05 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 4e-05 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 4e-05 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 4e-05 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 4e-05 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 4e-05 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 4e-05 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 5e-05 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 5e-05 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 5e-05 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 5e-05 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 6e-05 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 6e-05 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 6e-05 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 7e-05 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 7e-05 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 7e-05 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 7e-05 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 8e-05 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 8e-05 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 8e-05 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 8e-05 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 9e-05 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 9e-05 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 9e-05 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 9e-05 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 1e-04 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 1e-04 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 1e-04 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 1e-04 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 1e-04 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 1e-04 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 1e-04 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 1e-04 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 1e-04 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 1e-04 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 1e-04 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 1e-04 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 2e-04 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 2e-04 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 2e-04 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 2e-04 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 2e-04 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 2e-04 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 2e-04 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 2e-04 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 2e-04 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 2e-04 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 2e-04 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 3e-04 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 3e-04 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 3e-04 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 3e-04 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 3e-04 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 3e-04 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 3e-04 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 3e-04 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 3e-04 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 3e-04 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 3e-04 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 3e-04 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 3e-04 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 4e-04 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 4e-04 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 4e-04 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 4e-04 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 4e-04 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 5e-04 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 5e-04 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 5e-04 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 5e-04 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 5e-04 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 6e-04 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 6e-04 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 6e-04 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 6e-04 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 7e-04 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 7e-04 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 7e-04 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 8e-04 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 8e-04 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 8e-04 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 8e-04 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 8e-04 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 0.001 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 0.001 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 0.001 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 0.001 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 0.001 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 0.001 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 0.001 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 0.001 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 0.001 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 0.001 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 0.002 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 0.002 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 0.002 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 0.002 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 0.002 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 0.002 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 0.002 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 0.002 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 0.002 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 0.002 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 0.003 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 0.003 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 0.003 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 0.003 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 0.003 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 0.003 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 0.003 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 0.004 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 0.004 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 0.004 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 657 bits (1695), Expect = 0.0
Identities = 401/1380 (29%), Positives = 685/1380 (49%), Gaps = 141/1380 (10%)
Query: 38 RRRDDGYILMARRAAGLVIVLCNVLIFILYMGFGFYEYWNFRIVSFKSVSLVVTWALATV 97
R D GYI M L L++I+ FY +W + +V+ L +
Sbjct: 52 SRHDRGYIQMTHLNK-TKTAL-GFLLWIVCWADLFYSFWERSHGRAPAPVFLVSPTLLGI 109
Query: 98 VALCSRYYRTLGEHK--RWPLVLVLWWVVHLVIVLVCVSVYLLTHLSSIGLPHILPEAKA 155
L + + L K + +++ +W+V LV L + +L L + +
Sbjct: 110 TMLLATFLIQLERRKGVQSSGIMLTFWLVALVCALAILRSKILLALKEDAIVDPFRDTTF 169
Query: 156 VDFVSLPL--LVLLCFNATYACCCARDPSDLDIPLLREEDDEFLCKNISTFASAGVLSKI 213
+ +L L LVL CF D S PL E + + N +SA LS+I
Sbjct: 170 YIYFALVLSQLVLSCF---------SDKS----PLFSETNHD---PNPCPESSASFLSRI 213
Query: 214 TFHWLNQLFQRGRIQKLELLHIPPIPQSETANDASSLLEESLRKQ--------------- 258
TF W+ + G Q LE + + + +T+ +L E+ +K+
Sbjct: 214 TFWWITGMAVYGYRQPLEESDLWSLNKEDTSEMVVPVLVENWKKECKKTRKQPVSAVYGK 273
Query: 259 ----------KTDATSLPQVII----HAVWK-------------SLALNAAFAGVNTIAS 291
+ DA + +I H K ++ F ++ +
Sbjct: 274 KDPSKPKGSSQLDANEEVEALIVKSPHKPRKPSLFKVLYKTFGPYFLMSFCFKAIHDLMM 333
Query: 292 YIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRS 351
+IGP +++ + F++ Y +F+ A +++L Q++ G+R+++
Sbjct: 334 FIGPQILSLLIRFVNDPMAPDWQGY-FYTGLLFVCA-CLQTLILHQYFHICFVSGMRIKT 391
Query: 352 ALTVLIYKRSMAIKFAGPSS---GIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVI 408
A+ +Y++++ I + S G I+N+++VD +R D YI+ IW P+QV LAL
Sbjct: 392 AVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLATYINMIWSAPLQVILALYF 451
Query: 409 LYKNLGAAPAFAALFSTIFVMVS-NTPLANRQERFHSMIMEAKDARIKATSETLKSMRVL 467
L+ NLG P+ A + + +MV N +A + + + M++KD RIK +E L ++VL
Sbjct: 452 LWLNLG--PSVLAGVAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVL 509
Query: 468 KLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILL--KT 525
KL +WE FL K+ +R+ E LKK Y + F + +P LV++ITF V + +
Sbjct: 510 KLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTPFLVALITFAVYVTVDENN 569
Query: 526 PLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITE--PT 583
L + +LA F IL+ P+ LP +IS I Q VSL R++ F+ + + E
Sbjct: 570 ILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERRTI 629
Query: 584 SKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSI 643
+I + + W AR+ PT+ I +G+ VAV G VG GKSSLLS++
Sbjct: 630 KPGEGNSITVHNATFTW-ARDL---PPTLNGIT-FSIPEGALVAVVGQVGCGKSSLLSAL 684
Query: 644 LGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDI 703
L E+ ++ G + + G AYVPQ +WIQ ++RENILFGK + + +Y++VLE CAL D+
Sbjct: 685 LAEMDKVEGH-VHMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDL 743
Query: 704 EMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQC 763
E+ GD + +GE+G+NLSGGQKQR+ LARAVYSN+D+Y+FDDP SAVDAH G H+F+
Sbjct: 744 EILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHV 803
Query: 764 L--MGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNS--ELVR--- 816
+ G+L KT + TH + +L D+++VM GKI + G Y++L+ + E +R
Sbjct: 804 IGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEFLRTYA 863
Query: 817 ----QMKAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARPISC----GEFSGR---- 864
Q V+ ++ L ++ + ++ R +S R
Sbjct: 864 PDEQQGHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGDQSRHHGS 923
Query: 865 ----------------SQDEDTELGRVKWTVYSAFITLV--YKGALVPVILLCQVLFQAL 906
+ + + G+V+ +VY ++ + + L + +C
Sbjct: 924 SAELQKAEAKEETWKLMEADKAQTGQVELSVYWDYMKAIGLFITFLSIFLFVCN---HVS 980
Query: 907 QMGSNYWI-AWATD---EKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRL 962
+ SNYW+ W D + + + V+ L F + G ++ ++ I+ ++ L
Sbjct: 981 ALASNYWLSLWTDDPMVNGTQNNTSLRLSVYGALGILQGFAVFGYSMAVSIGGIQASRVL 1040
Query: 963 FLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIP---YRLAGLAFALIQLLSII 1019
+++ + R+P+SFF+ TPS ++NR S + TVD+ IP G F +I L +I
Sbjct: 1041 HQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVI 1100
Query: 1020 ILMSQAAWQVFPLF-LVILGISIWY---QAYYITTARELARMVGTRKAPILHHFSESIAG 1075
+L + P+ ++I + + Y Q +Y+ ++R+L R+ ++P+ HF+E++ G
Sbjct: 1101 LLAT-------PIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLG 1153
Query: 1076 ATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTL 1135
+ IR F ++ RF+ +S +D+ + + WL +R+ + N L + +
Sbjct: 1154 VSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGN-CIVLFAALFAVI 1212
Query: 1136 PRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKN 1195
R ++ L GL+ +Y L + W++ +E +++VER+ +++ EAP I+
Sbjct: 1213 SRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQE 1272
Query: 1196 SRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQAL 1255
+ P WP G++E N ++Y L +VL+ I T G +K+G+VGRTG+GKS+L L
Sbjct: 1273 TAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGL 1332
Query: 1256 FRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIW 1315
FR+ E + G I+IDG++I+ IGL DLR +++IIPQDP+LF G++R NLDP Q+SD+E+W
Sbjct: 1333 FRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVW 1392
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 643 bits (1661), Expect = 0.0
Identities = 376/1153 (32%), Positives = 612/1153 (53%), Gaps = 81/1153 (7%)
Query: 207 AGVLSKITFHWLNQLFQRGR---IQKLELLHIPPIPQSETANDA-SSLLEESLRKQKTDA 262
A + S+I F W+ L Q G + + ++ + Q+ET + +E L+K K
Sbjct: 232 ANIFSRIFFGWMTPLMQLGYKRPLTEKDVWKLDTWDQTETLYRSFQKCWDEELKKPKP-- 289
Query: 263 TSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFV-SFLSGKHDHSSYHYGLVLA 321
L + + +++ L F N ++ ++GP L+ + S +G+ Y Y
Sbjct: 290 -WLLRALNNSLGGRFWLGGFFKIGNDLSQFVGPLLLNLLLESMQNGEPAWIGYIYA---F 345
Query: 322 SVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAGP---SSGIIINMI 378
S+F+ + L + Q++ R+G R+RS L ++++S+ + G +SG I N++
Sbjct: 346 SIFV-GVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLM 404
Query: 379 NVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVS-NTPLAN 437
D E + +H +W P ++ +A+V+LY+ LG A +L + +M T + +
Sbjct: 405 TTDAEALQQICQQLHTLWSAPFRIIIAMVLLYQQLGVASLIGSLM--LVLMFPIQTFIIS 462
Query: 438 RQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYT 497
+ ++ ++ D RI +E L +M +K +WE F K+ +R+ E +K
Sbjct: 463 KMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLL 522
Query: 498 CSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIA 557
+ +F+ + P LV+V++FGV LL LT ++L+ F +L+ P++ LP LI+
Sbjct: 523 SAFNSFILNSIPVLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAV 582
Query: 558 QTKVSLYRIQE-FIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD 616
VSL R++E + E+ P P + AI I+ G ++WD++ E +PT L++
Sbjct: 583 NANVSLKRLEELLLAEERVLLP--NPPLEPGLPAISIKNGYFSWDSKAE---RPT--LSN 635
Query: 617 -KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTI 675
+ + GS VA+ GS G GK+SL+S++LGE+P S A++ + G AYVPQ SWI T+
Sbjct: 636 INLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATV 695
Query: 676 RENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735
R+NILFG YE ++ AL D+++ GDL+ +GERG+N+SGGQKQR+ +ARAV
Sbjct: 696 RDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAV 755
Query: 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDG 795
YSNSDVYIFDDP SA+DAH G +F +C+ L KT + T+QL FL D ++++ +G
Sbjct: 756 YSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEG 815
Query: 796 KIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQITEERFARP 855
I++ G YE+L N L +++ + +++ E+ S+ P
Sbjct: 816 MIKEEGTYEELSN--NGPLFQKLMENAGKMEEY---VEENGEEEDDQTSSK--------P 862
Query: 856 ISCGEFSGRSQD-----------------EDTELGRVKWTVYSAFITLVYKGAL-----V 893
++ G + +D E+ E G V W V YK AL V
Sbjct: 863 VANGNANNLKKDSSSKKKSKEGKSVLIKQEERETGVVSWKVLER-----YKNALGGAWVV 917
Query: 894 PVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQL--IGVFIFLSGGSSFFILGRAVLL 951
++ LC VL + ++ S+ W++ TD+ + L ++ LS G L + L
Sbjct: 918 MILFLCYVLTEVFRVSSSTWLSEWTDQGTPKTHGPLFYNLIYALLSFGQVLVTLLNSYWL 977
Query: 952 ATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFA 1011
++ A+RL M+ S+ RAP+SFF + P RI+NR + D +D ++ +
Sbjct: 978 IMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQ 1037
Query: 1012 LIQLLSIIILM----SQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILH 1067
+ QLLS +L+ + + W + PL ++ G ++YQ+ TARE+ R+ ++P+
Sbjct: 1038 IFQLLSTFVLIGIVSTISLWAIMPLLVLFYGAYLYYQS----TAREVKRLDSITRSPVYA 1093
Query: 1068 HFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFL 1127
F E++ G +TIR + +R + +D+ T N + WL +R+ L +L
Sbjct: 1094 QFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSNRWLAIRLETLGGLMIWL 1153
Query: 1128 VLIILVTLPRSAIDP----SLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFT 1183
V A + S GL +Y LN+ L V+ EN + +VER+ +
Sbjct: 1154 TASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYI 1213
Query: 1184 NIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGR 1243
++PSEAPLVI+N+RP P WPSSG I+ E+++++Y P LP VL G++ +K+G+VGR
Sbjct: 1214 DLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGR 1273
Query: 1244 TGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNL 1303
TG+GKS+++ ALFR+VE GRILIDG DIS GL DLR L IIPQ P+LF GTVR NL
Sbjct: 1274 TGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNL 1333
Query: 1304 DPLEQHSDQEIWE 1316
DP +H+D ++WE
Sbjct: 1334 DPFNEHNDADLWE 1346
|
Length = 1622 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 606 bits (1564), Expect = 0.0
Identities = 357/1144 (31%), Positives = 598/1144 (52%), Gaps = 52/1144 (4%)
Query: 200 NISTFASAGVLSKITFHWLNQLFQRGR---IQKLELLHIPPIPQSETAND--ASSLLEES 254
NI A + S+I F W+ L Q G I + ++ + Q+ET EES
Sbjct: 225 NICPERYASIFSRIYFSWMTPLMQLGYRKPITEKDVWQLDQWDQTETLIKRFQRCWTEES 284
Query: 255 LRKQKTDATSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSY 314
R + +L + W L F + ++ ++GP ++++ L +
Sbjct: 285 RRPKPWLLRALNNSLGGRFW----LGGIFKIGHDLSQFVGPVILSHL---LQSMQEGDPA 337
Query: 315 HYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAGP---SS 371
G V A + F T L + Q++ R+G R+RS L I+ +S+ + +S
Sbjct: 338 WVGYVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTLVAAIFHKSLRLTHEARKNFAS 397
Query: 372 GIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMV- 430
G + NMI D + +H +W P ++ +++V+LY+ LG A F +L +F+++
Sbjct: 398 GKVTNMITTDANALQQIAEQLHGLWSAPFRIIVSMVLLYQQLGVASLFGSLI--LFLLIP 455
Query: 431 SNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDS 490
T + + + ++ D R+ +E L SM +K +WE+ F ++ +R E
Sbjct: 456 LQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSW 515
Query: 491 LKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLP 550
+K + +F+ + P +V++++FGV +LL LT ++L+ F +L+ P+ LP
Sbjct: 516 FRKAQLLSAFNSFILNSIPVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLP 575
Query: 551 ELISMIAQTKVSLYRIQEFIKEDNQ---KKPITEPTSKASDVAIDIEAGEYAWDAREENF 607
L+S + VSL RI+E + + + + P +P + A I I+ G ++WD++
Sbjct: 576 NLLSQVVNANVSLQRIEELLLSEERILAQNPPLQPGAPA----ISIKNGYFSWDSKTS-- 629
Query: 608 KKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQ 666
KPT L+D ++I GS VA+ G G GK+SL+S++LGE+ +++ + G AYVPQ
Sbjct: 630 -KPT--LSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQ 686
Query: 667 SSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726
SWI T+RENILFG D Y ++ AL D+++ DL+ +GERG+N+SGGQK
Sbjct: 687 VSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQK 746
Query: 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAA 786
QR+ +ARAVYSNSD+YIFDDP SA+DAH +F C+ L KT + T+QL FL
Sbjct: 747 QRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLM 806
Query: 787 DLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLD-QVNPPQEDKCLSRVPCQMS 845
D ++++ +G I++ G + +L ++ L +++ + +D D+ + ++ ++
Sbjct: 807 DRIILVSEGMIKEEGTFAEL--SKSGSLFKKLMENAGKMDATQEVNTNDENILKLGPTVT 864
Query: 846 QITEERFARPISCGEFSGRS---QDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVL 902
ER G+ GRS + E+ E G + W V + V +V ++L+C +
Sbjct: 865 IDVSERNLGSTKQGK-RGRSVLVKQEERETGIISWNVLMRYNKAVGGLWVVMILLVCYLT 923
Query: 903 FQALQMGSNYWIAWATDEK--RKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQ 960
+ L++ S+ W++ TD+ + S I V+ L G + L + ++ A+
Sbjct: 924 TEVLRVSSSTWLSIWTDQSTPKSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAK 983
Query: 961 RLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIII 1020
RL M+ S+ RAP+ FF + P+ R++NR S D +D ++ + L QLLS
Sbjct: 984 RLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFA 1043
Query: 1021 LMSQAA----WQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGA 1076
L+ + W + PL ++ ++YQ +T+RE+ R+ ++PI F E++ G
Sbjct: 1044 LIGTVSTISLWAIMPLLILFYAAYLYYQ----STSREVRRLDSVTRSPIYAQFGEALNGL 1099
Query: 1077 TTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILV--- 1133
++IR + +R + +D+ T N + WL +R+ L +L V
Sbjct: 1100 SSIRAYKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGVMIWLTATFAVLRN 1159
Query: 1134 -TLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLV 1192
A S GL +Y LN+ L + V+ EN + SVER+ + ++PSEA +
Sbjct: 1160 GNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAI 1219
Query: 1193 IKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLI 1252
I+N+RP WPS G I+ E++ ++Y P LP VL G++ +K+GVVGRTG+GKS+++
Sbjct: 1220 IENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSML 1279
Query: 1253 QALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQ 1312
ALFR+VE GRI+ID D++ GL DLR LSIIPQ P+LF GTVR N+DP +H+D
Sbjct: 1280 NALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDA 1339
Query: 1313 EIWE 1316
++WE
Sbjct: 1340 DLWE 1343
|
Length = 1495 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 369 bits (948), Expect = e-106
Identities = 221/743 (29%), Positives = 359/743 (48%), Gaps = 56/743 (7%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENI 679
+ +G V G+ GSGKS+LL S+L + IS + AYVPQ +WI T+R NI
Sbjct: 683 VPRGKLTVVLGATGSGKSTLLQSLLSQF-EISEGRVWAERSIAYVPQQAWIMNATVRGNI 741
Query: 680 LFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNS 739
LF + + + + L D+ G + +GE+G+NLSGGQK R+ LARAVY+N
Sbjct: 742 LFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANR 801
Query: 740 DVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQ 799
DVY+ DDP SA+DAH G + ++C +G L+ KT + THQ+ + AD V+ + DG++E
Sbjct: 802 DVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEF 861
Query: 800 SGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQIT----------- 848
SG D + + K + + E + P
Sbjct: 862 SGSSADFMRTSLYATLAAELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAE 921
Query: 849 -EERFARPISCGEFSGRSQDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQ 907
+ A + G R E+ G V W+ Y A++ +L + + +
Sbjct: 922 GGDGAALDAAAGRLMTR---EEKASGSVPWSTYVAYLRFCGGLHAAGFVLATFAVTELVT 978
Query: 908 MGSNYWIA-WATDEKRKVSREQL-IGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLN 965
+ S W++ W+T + + L + + I L G S + R L + ++ + +
Sbjct: 979 VSSGVWLSMWSTRSFKLSAATYLYVYLGIVLLGTFSVPL--RFFLSYEAMRRGSRNMHRD 1036
Query: 966 MITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQA 1025
++ SV R +SFFD+TP RILNR S D +D +P L L + S I++ S +
Sbjct: 1037 LLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSAS 1096
Query: 1026 AWQVFPLFLVILGISIWYQ--AYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFN 1083
Q F L ++ ++Y+ +Y + RE+ R+ K+P+ E++ G+ TI +
Sbjct: 1097 --QPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYG 1154
Query: 1084 QENRFLLRSHSLID-DYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVT---LPRSA 1139
+ + + + +D YSC N WL +R+ L N ++ +I V L ++
Sbjct: 1155 KAHLVMQEALRRLDVVYSCSYLENV-ANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATS 1213
Query: 1140 IDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFT-NIPSEA--------- 1189
+ L L+ T + W++ + VE M SVER+L +T +P E
Sbjct: 1214 QEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELDEEVD 1273
Query: 1190 --------------PLVIKNSRPSPEWP---SSGKIELENLLVQYNPTLPMVLKGITCTF 1232
+VI+ + P+ P +G + E + ++Y LP+VL+G++
Sbjct: 1274 ALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRGVSFRI 1333
Query: 1233 PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDP 1292
+K+G+VGRTGSGKSTL+ R+VE GG I ++G +I GL++LR + S+IPQDP
Sbjct: 1334 APREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDP 1393
Query: 1293 MLFQGTVRTNLDPLEQHSDQEIW 1315
+LF GTVR N+DP + S E+W
Sbjct: 1394 VLFDGTVRQNVDPFLEASSAEVW 1416
|
Length = 1560 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 305 bits (784), Expect = 7e-96
Identities = 109/207 (52%), Positives = 151/207 (72%), Gaps = 4/207 (1%)
Query: 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI 650
I +E + WD+ E+ T+K + +++ KG VA+ G VGSGKSSLLS++LGE+ ++
Sbjct: 1 ISVEDASFTWDSGEQETS-FTLKDIN-LEVPKGELVAIVGPVGSGKSSLLSALLGELEKL 58
Query: 651 SGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGD 710
SG+ + V G AYV Q WIQ GTIRENILFGK + YE+V++ CAL D+E+ DGD
Sbjct: 59 SGS-VSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGD 117
Query: 711 LSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMG-LLS 769
L+ +GE+GINLSGGQKQRI LARAVYS++D+Y+ DDP SAVDAH G H+F+ C++G LL+
Sbjct: 118 LTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLN 177
Query: 770 QKTVLYTTHQLEFLDAADLVLVMKDGK 796
KT + THQL+ L AD ++V+ +G+
Sbjct: 178 NKTRILVTHQLQLLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 227 bits (581), Expect = 3e-60
Identities = 178/670 (26%), Positives = 311/670 (46%), Gaps = 60/670 (8%)
Query: 202 STFASAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQSETANDASSLLEESLRKQKTD 261
S A LSK+ F W + ++G QKLEL I IP ++A++ S LE ++
Sbjct: 4 SPVEKANFLSKLFFWWTRPILRKGYRQKLELSDIYQIPSFDSADNLSERLEREWDRELAS 63
Query: 262 ATSLPQVIIHAVWKSLALNAAFAGV----NTIASYIGPFLITNFVSFLSGKHDHS---SY 314
A P+ +++A+ + F G+ + P L+ ++ + +Y
Sbjct: 64 AKKNPK-LLNALRRCFFWRFVFYGILLYFGEATKAVQPLLLGRIIASYDPFNAPEREIAY 122
Query: 315 HYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIK---FAGPSS 371
+ L L +F+ V +L FG + +G+++R AL LIYK+++ + S+
Sbjct: 123 YLALGLCLLFI----VRTLLLHPAIFGLHHLGMQMRIALFSLIYKKTLKLSSRVLDKIST 178
Query: 372 GIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVS 431
G ++++++ ++ + + H +W+ P+QV L L+ L L F L I + +
Sbjct: 179 GQLVSLLSNNLNKFDEGLALAHFVWIAPLQVIL-LMGLIWELLEVNGFCGLGFLILLALF 237
Query: 432 NTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSL 491
L + + R+ TSE +++++ +K WE+ K + +R+ E
Sbjct: 238 QACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLT 297
Query: 492 KK--YLYTCSAIAFLFWASPTLVSVI---TFGVCILLKTPLTSGAVLSALATFRILQEPI 546
+K YL + AF F + + I+L+ T+ + L Q
Sbjct: 298 RKIAYLRYFYSSAFFFSGFFVVFLSVVPYALIKGIILRRIFTTISYCIVLRMTVTRQ--- 354
Query: 547 YNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEA------GEYAW 600
P I + ++ +IQ+F+ ++ K T+ ++ +++ A GE
Sbjct: 355 --FPGAIQTWYDSLGAITKIQDFLCKEEYKTLEYNLTTTEVEM-VNVTASWDEGIGELFE 411
Query: 601 DAREENFKKPTIKLTDKM------------------KIMKGSKVAVCGSVGSGKSSLLSS 642
++ N + D + K+ KG +AV GS GSGKSSLL
Sbjct: 412 KIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMM 471
Query: 643 ILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQD 702
I+GE+ G IK G+ ++ PQ+SWI GTI++NI+FG + Y V++ C L +D
Sbjct: 472 IMGELEPSEGK-IKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEED 530
Query: 703 IEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQ 762
I ++ + D +V+GE GI LSGGQ+ RI LARAVY ++D+Y+ D PF+ +D T +F+
Sbjct: 531 IALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFES 590
Query: 763 CLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQ--------NSEL 814
CL L+S KT + T +LE L AD +L++ +G G + +L A + E
Sbjct: 591 CLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAKRPDFSSLLLGLEA 650
Query: 815 VRQMKAHRKS 824
A R++
Sbjct: 651 FDNFSAERRN 660
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 217 bits (553), Expect = 5e-57
Identities = 136/493 (27%), Positives = 238/493 (48%), Gaps = 51/493 (10%)
Query: 867 DEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGS--NYWIAWAT------ 918
+ + W Y +IT LV V++ C V+F A S W+
Sbjct: 843 ERENVFETTTWNTYLRYITT--NRNLVFVLIFCLVIFLAEVAASLLGLWLITDNPSAPNY 900
Query: 919 -DEKRKVSREQLIGVFIFLSGGSSFFI-------------LG--RAVLLATIAIKTAQRL 962
D++ + + + ++ S+++I LG R + L + ++RL
Sbjct: 901 VDQQHANASSPDVQKPVIITPTSAYYIFYIYVGTADSVLALGFFRGLPLVHTLLTVSKRL 960
Query: 963 FLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIII-- 1020
M+ SV +AP++ ++ + RILNR + D + +D +P L F IQL I++
Sbjct: 961 HEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTL----FDFIQLTLIVLGA 1016
Query: 1021 LMSQAAWQVFPLFLVI--LGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATT 1078
+ + Q + I I I +AY++ T+++L ++ ++PI H S+ G T
Sbjct: 1017 IFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWT 1076
Query: 1079 IRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRS 1138
IR F +++ F H ++ ++ F T+ W +RI+++F FF + + + + +
Sbjct: 1077 IRAFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQMRIDIIF--VFFFIAVTFIAIGTN 1134
Query: 1139 AIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAP-------- 1190
G+ T +N+ W + + +V+ M SV R+ +F ++P E P
Sbjct: 1135 QDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGGK 1194
Query: 1191 ------LVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRT 1244
LVI+N WPS G+++++ L +Y VL+ ++ + G +++G++GRT
Sbjct: 1195 YQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRT 1254
Query: 1245 GSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLD 1304
GSGKSTL+ AL R++ + G I IDGV + + LQ R +IPQ +F GT R NLD
Sbjct: 1255 GSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLD 1313
Query: 1305 PLEQHSDQEIWEV 1317
P EQ SD+EIW+V
Sbjct: 1314 PYEQWSDEEIWKV 1326
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 196 bits (500), Expect = 7e-57
Identities = 69/112 (61%), Positives = 90/112 (80%)
Query: 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGR 1265
G IE +N+ ++Y P LP VLK I+ + +K+G+VGRTGSGKS+L+ ALFR+VE S G
Sbjct: 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGS 60
Query: 1266 ILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEV 1317
ILIDGVDIS IGL DLRSR+SIIPQDP+LF GT+R+NLDP ++SD+E+W+
Sbjct: 61 ILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQA 112
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 204 bits (522), Expect = 5e-56
Identities = 139/554 (25%), Positives = 243/554 (43%), Gaps = 29/554 (5%)
Query: 275 KSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLT 334
K L L ++ + S + P LI + L L+L + L + +L
Sbjct: 14 KLLLLAILLLLLSALLSLLLPLLIGRIIDALLADLG-ELLELLLLLLLLALLGGVLRALQ 72
Query: 335 QRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAGPSSGIIINMINVDVERIGDFFL-YIH 393
+I +R L + + ++ F SG +I+ + DVE + + +
Sbjct: 73 SYLGSRLGQKIVADLRRDLFEKLLRLPLS-FFDKAKSGDLISRLTNDVEAVSNLVSTVLV 131
Query: 394 RIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDAR 453
++ + + +LV+L+ +L A L + + + LA + + + EA
Sbjct: 132 LVFTSILLLIGSLVLLF-SLSWRLALILLLILPLLALVLSLLARKSRKLSRRVREALGEL 190
Query: 454 IKATSETLKSMRVLKLLSWEQEFLKKLLRL-REIERDSLKKYLYTCSAIAFLFWASP-TL 511
E+L +RV+K E LK+ E+ R +L+ + S
Sbjct: 191 NARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGT 250
Query: 512 VSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIK 571
V V+ G ++L LT GA+ + + L PI L E++S++ + + R+ E +
Sbjct: 251 VLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLD 310
Query: 572 EDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGS 631
E+ + + +P K + +I+ E +++ ++ K + I G KVA+ G
Sbjct: 311 EEPEVEDPPDPL-KDTIGSIEFENVSFSYPGKKPVLKDISFS------IEPGEKVAIVGP 363
Query: 632 VGSGKSSLLSSILGEIPRISGAAIKVHGKK-------------AYVPQSSWIQTGTIREN 678
GSGKS+L+ +L SG I + G V Q + +GTIREN
Sbjct: 364 SGSGKSTLIKLLLRLYDPTSGE-ILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIREN 422
Query: 679 ILFGK-DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS 737
I G+ D EE L+ ++ I DG ++VGERG+NLSGGQ+QR+ +ARA+
Sbjct: 423 IALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLR 482
Query: 738 NSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKI 797
N + I D+ SA+D T + L LL +T L H+L + AD ++V+ +G+I
Sbjct: 483 NPPILILDEATSALDTETEALIQDA-LKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRI 541
Query: 798 EQSGKYEDLIADQN 811
+ G +E+L+A
Sbjct: 542 VERGTHEELLAKGG 555
|
Length = 567 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 193 bits (491), Expect = 6e-52
Identities = 110/434 (25%), Positives = 190/434 (43%), Gaps = 10/434 (2%)
Query: 888 YKGALVPVILLCQVLFQALQMGSNYWIAWATDE--KRKVSREQLIGVFIFLSGGSSFFIL 945
K L+ + +L +L L + I D +L+ + + L+
Sbjct: 11 LKYKLLLLAILLLLLSALLSLLLPLLIGRIIDALLADLGELLELLLLLLLLALLGGVLRA 70
Query: 946 GRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRL 1005
++ L + + K L ++ + R P+SFFD S +++R + D V + L
Sbjct: 71 LQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVL 130
Query: 1006 AGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPI 1065
+ +++ L+ ++L+ +W++ + L+IL + + +R+L+R V +
Sbjct: 131 VLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVREALGEL 190
Query: 1066 LHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAF 1125
ES++G I+ F E+R L R ++ L + LL +
Sbjct: 191 NARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGT 250
Query: 1126 FLVLIILVTLPRSA-IDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTN 1184
LVL + L S + Y L L + + ++ + ER+ + +
Sbjct: 251 VLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLD 310
Query: 1185 IPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRT 1244
E P P + G IE EN+ Y P VLK I+ + +K+ +VG +
Sbjct: 311 EEPEVE-----DPPDPLKDTIGSIEFENVSFSYPGKKP-VLKDISFSIEPGEKVAIVGPS 364
Query: 1245 GSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLD 1304
GSGKSTLI+ L R+ +P+ G ILIDG+DI I L LR R+ I+ QDP+LF GT+R N+
Sbjct: 365 GSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIA 424
Query: 1305 P-LEQHSDQEIWEV 1317
+D+EI E
Sbjct: 425 LGRPDATDEEIEEA 438
|
Length = 567 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 171 bits (436), Expect = 1e-48
Identities = 69/116 (59%), Positives = 89/116 (76%)
Query: 1202 WPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP 1261
WP G+IE+ENL V+Y P LP VLK ++ +KIG+VGRTG+GKSTLI ALFR +E
Sbjct: 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEA 60
Query: 1262 SGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEV 1317
G+I IDG+DIS I L+DLRS L+IIPQDP LF GT+R+NLDP +++SD+EI+
Sbjct: 61 EEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGA 116
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 174 bits (442), Expect = 2e-48
Identities = 80/189 (42%), Positives = 119/189 (62%), Gaps = 1/189 (0%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRE 677
+KI KG +A+ GS GSGK+SLL ILGE+ G IK G+ ++ Q SWI GTI+E
Sbjct: 58 LKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGK-IKHSGRISFSSQFSWIMPGTIKE 116
Query: 678 NILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS 737
NI+FG + Y+ V++ C L +DI + + D +V+GE GI LSGGQ+ RI LARAVY
Sbjct: 117 NIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYK 176
Query: 738 NSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKI 797
++D+Y+ D PF +D T +F+ C+ L++ KT + T ++E L AD +L++ +G
Sbjct: 177 DADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSS 236
Query: 798 EQSGKYEDL 806
G + +L
Sbjct: 237 YFYGTFSEL 245
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 160 bits (407), Expect = 1e-44
Identities = 78/199 (39%), Positives = 114/199 (57%), Gaps = 24/199 (12%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH------------------- 658
++I G + G VG GKSSLL +ILGE+ + G KVH
Sbjct: 22 IRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEG---KVHWSNKNESEPSFEATRSRNR 78
Query: 659 GKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERG 718
AY Q W+ T+ ENI FG + Y+ V + C+L DI++ GD + +GERG
Sbjct: 79 YSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERG 138
Query: 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYT 776
INLSGGQ+QRI +ARA+Y N+++ DDPFSA+D H HL ++ ++ L ++T++
Sbjct: 139 INLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLV 198
Query: 777 THQLEFLDAADLVLVMKDG 795
TH+L++L AD ++ MKDG
Sbjct: 199 THKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 164 bits (418), Expect = 1e-41
Identities = 132/528 (25%), Positives = 227/528 (42%), Gaps = 60/528 (11%)
Query: 316 YGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIK---FAGPSSG 372
GL+LA++F R + +G R+ L+ ++ + + F S G
Sbjct: 198 IGLLLAALFEALLR----LLRTYLI--AHLGKRLDLELSGRFFRHLLRLPLSYFEKRSVG 251
Query: 373 IIINMINVDVERIGDFFL--YIHRIWLLPVQVFLALVILYKN---LGAAPAFAALFSTIF 427
II+ + ++E+I +F + I L + V+ + A L I
Sbjct: 252 EIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLIT 310
Query: 428 VMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKL-LRLREI 486
++ L + + ++E + ET+K + +K L+ E F + RL +
Sbjct: 311 LIFQP-LLRRKTRK----LIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQ 365
Query: 487 ERDSLKK-YLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQ-- 543
K L + V ++ FG ++L+ LT G +++ F +L
Sbjct: 366 VNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVA----FNMLAGY 421
Query: 544 --EPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWD 601
PI L +L + Q KV+L R+ + + E + + + GE ++
Sbjct: 422 FISPITRLSQLWTDFQQAKVALERLGDILDTPP------EQEGDKTLIHLPKLQGEIEFE 475
Query: 602 A---REENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH 658
R P ++ +I G KVA+ G GSGKS+LL +LG G I +
Sbjct: 476 NVSFRYGPDDPPVLEDLSL-EIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGR-ILLD 533
Query: 659 GKK-------------AYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGC---ALNQD 702
G YV Q ++ +G+IRENI G ++ EE++E ++
Sbjct: 534 GVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNP--EATDEEIIEAAQLAGAHEF 591
Query: 703 IEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQ 762
IE G + VGE G NLSGGQ+QR+ LARA+ S + + D+ SA+D T + Q
Sbjct: 592 IENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPET-EAIILQ 650
Query: 763 CLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQ 810
L+ +L +TV+ H+L + +AD ++V+ GKI + G +E+L+A
Sbjct: 651 NLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQG 698
|
Length = 709 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 158 bits (403), Expect = 1e-40
Identities = 143/590 (24%), Positives = 249/590 (42%), Gaps = 79/590 (13%)
Query: 277 LALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQR 336
AL A +G+ IA L + G+ S ++L + + L +R
Sbjct: 5 SALLAVLSGIAIIAQAA--LLADILTKLIEGQLFQSLLPLLILLLIALVLRAFLAWLRER 62
Query: 337 QWYFGANRIGIRVRSALTVLIYKRSMAIKFAGPSSGIIINMINVDVERIGDFF-LYIHRI 395
Y A ++ +R + + K A A +G + +E++ ++ Y
Sbjct: 63 LGYRAAAKVRASLRQLVLDKLAKLGPA-FIAQKPAGSAATLALEGIEQLEPYYARY---- 117
Query: 396 WLLPVQVFLALVILYKNLGAAPA--FAALF----STIFVMVSNTPLANRQERFHSMI--- 446
LP Q+FL+ ++ P A+F + +++ PL MI
Sbjct: 118 --LP-QMFLSAIV--------PLLILIAIFFFNWAAALILLITAPLI-----PLFMILVG 161
Query: 447 MEAKDARIKATS----------ETLKSMRVLKLL----SWEQEFLKKLLRLREIERDSLK 492
+ AKDA K S + L+ + L+ + E+ K R+ L+
Sbjct: 162 LAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLR 221
Query: 493 KYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQ----EPIYN 548
+ + + F + S LV+V G +L + LT A L L IL +P+ +
Sbjct: 222 IAFLSSAVLEFFAYLSIALVAV-YIGFRLLGEGDLTLFAGLFVL----ILAPEFFQPLRD 276
Query: 549 LPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFK 608
L A + + ++ ++ E A++ I+I ++ +
Sbjct: 277 LGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPD---G 333
Query: 609 KPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK------- 661
KP + + + I G A+ G+ G+GKS+LL+ +LG + G I+V+G
Sbjct: 334 KPALSDLN-LTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGE-IRVNGIDLRDLSPE 391
Query: 662 ------AYVPQSSWIQTGTIRENILFGK-DMRQSFYEEVLEGCALNQDIEMWADGDLSVV 714
++V Q+ ++ GTIRENIL + D L+ L + + DG +V+
Sbjct: 392 AWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVP-KPDGLDTVI 450
Query: 715 GERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVL 774
GE G LSGGQ QR+ LARA+ S + + + D+P + +DA T + Q L L QKTVL
Sbjct: 451 GEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQII-LQALQELAKQKTVL 509
Query: 775 YTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNS--ELVRQMKAHR 822
TH+LE AD ++V+ +G++ + G +E+L Q L++Q + R
Sbjct: 510 VITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQGLYANLLKQQEGRR 559
|
Length = 559 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 153 bits (389), Expect = 3e-38
Identities = 118/458 (25%), Positives = 195/458 (42%), Gaps = 43/458 (9%)
Query: 883 FITLV--YKGALVPVILLCQVLFQALQMGSNYWIAWATDEKRKV----SREQLIGVFIFL 936
FI L+ Y+ L V+L +L Q L + + + D KV SR L + I L
Sbjct: 145 FIPLLFKYRRLLFEVLLA-SLLLQLLALATPLFSQIVID---KVLPDASRSTLTVLAIGL 200
Query: 937 SGGSSFFILGRAVL--LATIAI-KTAQRLFLNMITSVFRA----PISFFDSTPSSRILNR 989
L A+L L T I +RL L + FR P+S+F+ I++R
Sbjct: 201 L----LAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISR 256
Query: 990 CS---TDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAY 1046
+ + I + L FALI L + + + V + + I++ +Q
Sbjct: 257 VRELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPL 316
Query: 1047 YITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHN 1106
R+L +++ E+I G T++ E RF + + + + F
Sbjct: 317 LRRKTRKLIEESAEQQS----FLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKT 372
Query: 1107 CGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAIDP--SLAGLAATYGLNLNVLQAWVIW 1164
L +LL + L+L L ++ +L L A L + I
Sbjct: 373 EKLALILNTIKSLLQQLSSVLILWFGAIL---VLEGELTLGQLVAFNMLAGYFISP--IT 427
Query: 1165 NLCNVENKM----ISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPT 1220
L + +++ER+ + P E + G+IE EN+ +Y P
Sbjct: 428 RLSQLWTDFQQAKVALERLGDILDTPPEQEG---DKTLIHLPKLQGEIEFENVSFRYGPD 484
Query: 1221 LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD 1280
P VL+ ++ P +K+ +VGR+GSGKSTL++ L + +P GRIL+DGVD++ I L
Sbjct: 485 DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLAS 544
Query: 1281 LRSRLSIIPQDPMLFQGTVRTNLDPLEQH-SDQEIWEV 1317
LR ++ + QDP LF G++R N+ +D+EI E
Sbjct: 545 LRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEA 582
|
Length = 709 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 152 bits (386), Expect = 4e-37
Identities = 93/318 (29%), Positives = 161/318 (50%), Gaps = 12/318 (3%)
Query: 264 SLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASV 323
SL + + A+ + F ++ + + P L+ FV FL D++++ GL L
Sbjct: 233 SLLRTLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDA--DNATWGRGLGLVLT 290
Query: 324 FLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIK---FAGP--SSGIIINMI 378
+ ++S+ ++Y+ + R G++ RSAL LI+++ I A P ++G IINM+
Sbjct: 291 LFLTQLIQSVCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMM 350
Query: 379 NVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLG--AAPAFAALFSTIFVMVSNTPLA 436
+ DVERI F Y +W P+ + L++++L + +G A A A L T+ + N +
Sbjct: 351 STDVERINSFMQYCMYLWSSPMVLLLSILLLSRLVGWCALMAVAVLLVTLPL---NGAIM 407
Query: 437 NRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLY 496
Q I +A DAR+KAT+E +R+ K ++WE F+ + R E L+
Sbjct: 408 KHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQL 467
Query: 497 TCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMI 556
A +F+ A+PTL+ + F V LL LT V +A +L+ P + +P + + +
Sbjct: 468 ARVATSFVNNATPTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTV 527
Query: 557 AQTKVSLYRIQEFIKEDN 574
Q VS+ RI F++ DN
Sbjct: 528 LQFLVSIKRISTFLECDN 545
|
Length = 1560 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 8e-34
Identities = 69/209 (33%), Positives = 109/209 (52%), Gaps = 20/209 (9%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSIL-------GEIPRISGAAIK------VHGKKAYVP 665
I G KVA+ G GSGKS++L + G I I G I+ + VP
Sbjct: 23 TIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI-LIDGQDIREVTLDSLRRAIGVVP 81
Query: 666 QSSWIQTGTIRENILFGKDMRQSFYEEVLEGC---ALNQDIEMWADGDLSVVGERGINLS 722
Q + + TI NI +G+ + EEV+E ++ I + DG ++VGERG+ LS
Sbjct: 82 QDTVLFNDTIGYNIRYGRP--DATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLS 139
Query: 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEF 782
GG+KQR+ +ARA+ N + + D+ SA+D HT + L + +T + H+L
Sbjct: 140 GGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQ-AALRDVSKGRTTIVIAHRLST 198
Query: 783 LDAADLVLVMKDGKIEQSGKYEDLIADQN 811
+ AD ++V+KDG+I + G +E+L+A
Sbjct: 199 IVNADKIIVLKDGRIVERGTHEELLAKGG 227
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 125 bits (318), Expect = 4e-33
Identities = 61/192 (31%), Positives = 86/192 (44%), Gaps = 56/192 (29%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSIL-------GEIPRISGAAIK------VHGKKAYV 664
+ I G KVA+ G GSGKS+LL +L GEI I G ++ + AYV
Sbjct: 23 LTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI-LIDGVDLRDLDLESLRKNIAYV 81
Query: 665 PQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724
PQ ++ +GTIRENIL SGG
Sbjct: 82 PQDPFLFSGTIRENIL-----------------------------------------SGG 100
Query: 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD 784
Q+QRI +ARA+ + + I D+ SA+D T L + L L KTV+ H+L +
Sbjct: 101 QRQRIAIARALLRDPPILILDEATSALDPET-EALILEALRALAKGKTVIVIAHRLSTIR 159
Query: 785 AADLVLVMKDGK 796
AD ++V+ DG+
Sbjct: 160 DADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 5e-32
Identities = 68/216 (31%), Positives = 117/216 (54%), Gaps = 15/216 (6%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHGKKAYVPQSSWI-QT- 672
+ G ++A+ G G+GK+SLL+++LG +P +I+G ++ +++ SW+ Q
Sbjct: 373 LPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESWRKHLSWVGQNP 432
Query: 673 ----GTIRENILFGK-DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727
GT+R+N+L G D ++ LE +++ + + G + +G++ LS GQ Q
Sbjct: 433 QLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQ 492
Query: 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAAD 787
R+ LARA+ + + D+P +++DAH+ L Q L ++T L THQLE L D
Sbjct: 493 RLALARALLQPCQLLLLDEPTASLDAHS-EQLVMQALNAASRRQTTLMVTHQLEDLAQWD 551
Query: 788 LVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRK 823
+ VM+DG+I Q G Y +L L + AHR+
Sbjct: 552 QIWVMQDGQIVQQGDYAELSQAGG--LFATLLAHRQ 585
|
Length = 588 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 5e-32
Identities = 67/217 (30%), Positives = 113/217 (52%), Gaps = 21/217 (9%)
Query: 608 KKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSIL-------GEIPRISGAAIK---- 656
KKP +K + I G VA+ G G+GK++L++ ++ G+I I G I+
Sbjct: 15 KKPVLKDIN-FSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQI-LIDGIDIRDISR 72
Query: 657 --VHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCA---LNQDIEMWADGDL 711
+ V Q +++ +GTI ENI G+ EEV+E + I +G
Sbjct: 73 KSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATD--EEVIEAAKEAGAHDFIMKLPNGYD 130
Query: 712 SVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK 771
+V+GE G NLS G++Q + +ARA+ + + I D+ S +D T L ++ L L+ +
Sbjct: 131 TVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEK-LIQEALEKLMKGR 189
Query: 772 TVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808
T + H+L + AD +LV+ DGKI + G +++L+A
Sbjct: 190 TSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA 226
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 6e-32
Identities = 42/96 (43%), Positives = 63/96 (65%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
IE +N+ Y VLK ++ T +K+ +VG +GSGKSTL++ L R+ +P+ G IL
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNL 1303
IDGVD+ + L+ LR ++ +PQDP LF GT+R N+
Sbjct: 61 IDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI 96
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 123 bits (309), Expect = 4e-31
Identities = 57/118 (48%), Positives = 83/118 (70%), Gaps = 1/118 (0%)
Query: 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGR 1265
G+I++ +L V+Y L VLK + +K+G+ GRTGSGKS+L A FR+V+ G+
Sbjct: 18 GEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGK 77
Query: 1266 ILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWE-VKISKL 1322
I+IDG+DIS + L LRSRLSII QDP+LF G++R NLDP + +D +WE ++I++L
Sbjct: 78 IVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQL 135
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 5e-31
Identities = 136/515 (26%), Positives = 225/515 (43%), Gaps = 63/515 (12%)
Query: 317 GLVLASVF-LFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAG--PSSGI 373
G+ LA VF KT+ S YF + G + L+ +++R + ++ S G
Sbjct: 192 GVALAIVFDFVLKTLRS------YF-LDVAGKKADLILSAKLFERVLGLRMEARPASVGS 244
Query: 374 IINMINVDVERIGDFF--LYIHRIWLLPVQVFLALVILY---KNLGAAPAFAALFSTIFV 428
N + + E + DFF + + LP L L+++ L P A +
Sbjct: 245 FANQLR-EFESVRDFFTSATLTALIDLPF-ALLFLLVIAIIGGPLVWVPLVAIPLILLPG 302
Query: 429 MVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLR-LREIE 487
++ PL+ E M R E+L + +K L+ E F ++ + + +
Sbjct: 303 LLLQRPLSRLAEE----SMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALA 358
Query: 488 RDSLKKYLYTCSAIAFLFWASPTLVSV--ITFGVCILLKTPLTSGAVLSA--LATFRILQ 543
R LK + A F + LVSV + GV ++ LT G +++ L+ R L
Sbjct: 359 RSGLKSRFLSNLATNFAQFIQ-QLVSVAIVVVGVYLISDGELTMGGLIACVMLSG-RALA 416
Query: 544 EPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAR 603
P+ L L++ Q K +L + E ++ P+ P + GE + R
Sbjct: 417 -PLGQLAGLLTRYQQAKTALQSLDELMQ-----LPVERPEGTRF-LHRPRLQGEI--EFR 467
Query: 604 EENF-----KKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH 658
+F + P + + I G KVA+ G +GSGKS+LL +LG G+ + +
Sbjct: 468 NVSFAYPGQETPALD-NVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGS-VLLD 525
Query: 659 G-------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVL---EGCALNQD 702
G YVPQ + GT+R+NI G + EE+L E + +
Sbjct: 526 GVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALG--APYADDEEILRAAELAGVTEF 583
Query: 703 IEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQ 762
+ DG +GERG +LSGGQ+Q + LARA+ + + + D+P SA+D + FK
Sbjct: 584 VRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEER-FKD 642
Query: 763 CLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKI 797
L L+ KT++ TH+ LD D ++VM +G+I
Sbjct: 643 RLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRI 677
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 128 bits (325), Expect = 1e-30
Identities = 125/621 (20%), Positives = 235/621 (37%), Gaps = 117/621 (18%)
Query: 263 TSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSG--------KHDHSSY 314
LP + ++ K L + T+ + IG LSG +
Sbjct: 3 ALLPYLRLYKRHKFGLLLGIVLAILTLLASIGLL-------TLSGWFISASAIAGLAYIF 55
Query: 315 HYGLVLASVFLFAKT------VESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAG 368
+ L A V A VE L F RV SAL V ++++ + A
Sbjct: 56 NVMLPSAGVRGLAILRTAARYVERLVSHDATF-------RVLSALRVRLFEKLEPLSPAL 108
Query: 369 PS---SGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPA---FAAL 422
SG ++N + DV+ + + +L + ++ + + + I A L
Sbjct: 109 LLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGLIL 168
Query: 423 FSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKS--------MRVLKLLSWEQ 474
+ ++ P R A + L+S L + E
Sbjct: 169 LLLLLII----PTLFY--RAG----RKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAED 218
Query: 475 EFLKKLLR-LREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCI------LLKTPL 527
+ L + K+ +T + A L + LV + + L +
Sbjct: 219 AYRTALEATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGA 278
Query: 528 TSG--AVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSK 585
+ +AL F L P + Q S R+ + + QK +T P +
Sbjct: 279 ALALLVIFAALEAFEPL------APGAFQHLGQVIASARRLNDILD---QKPEVTFPDEQ 329
Query: 586 ASDVAIDIEAGEYAWDAREENFKKPTIK---LTD-KMKIMKGSKVAVCGSVGSGKSSLLS 641
+ +E R +F P + L + + + +G KVA+ G GSGKS+LL
Sbjct: 330 TATTGQALEL-------RNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQ 382
Query: 642 SILGEIPRISGAAIKVHGKK-------------AYVPQSSWIQTGTIRENILFGK----- 683
+ G G+ I ++G + + + Q + +GT+R+N+
Sbjct: 383 LLAGAWDPQQGS-ITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASD 441
Query: 684 -DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVY 742
++ L+ L + +E DG + +GE G LSGG+++R+ LARA+ ++ ++
Sbjct: 442 EELW-----AALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLW 496
Query: 743 IFDDPFSAVDAHTGTHLFKQCLMGLLSQ----KTVLYTTHQLEFLDAADLVLVMKDGKIE 798
+ D+P +D T ++ ++ LL + KT+L TH+L L+ D ++V+ +GKI
Sbjct: 497 LLDEPTEGLDPIT-----ERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKII 551
Query: 799 QSGKYEDLIADQNSELVRQMK 819
+ G + +L+A+ +++
Sbjct: 552 EEGTHAELLANN--GRYKRLY 570
|
Length = 573 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 1e-30
Identities = 65/208 (31%), Positives = 106/208 (50%), Gaps = 22/208 (10%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPR---ISGAAIKVHG-------------KKA 662
I G VA+ G GSGKS+L++ I PR + I + G +
Sbjct: 24 DIPAGETVALVGPSGSGKSTLVNLI----PRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79
Query: 663 YVPQSSWIQTGTIRENILFGK-DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721
V Q ++ T+ ENI +G+ + EE ++ I +G +V+GERG+ L
Sbjct: 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKL 139
Query: 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLE 781
SGGQ+QRI +ARA+ + + I D+ SA+D + L + L L+ +T H+L
Sbjct: 140 SGGQRQRIAIARALLKDPPILILDEATSALDTES-ERLVQAALERLMKNRTTFVIAHRLS 198
Query: 782 FLDAADLVLVMKDGKIEQSGKYEDLIAD 809
++ AD ++V++DGKI + G +E+L+A
Sbjct: 199 TIENADRIVVLEDGKIVERGTHEELLAQ 226
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 118 bits (299), Expect = 4e-30
Identities = 68/208 (32%), Positives = 103/208 (49%), Gaps = 21/208 (10%)
Query: 606 NFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILG-EIP-----RISGAAIK--- 656
N + P + + I G KVA+ G VGSGKS+LL + G P + G I+
Sbjct: 14 NQEIPALDN-VSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLD 72
Query: 657 ---VHGKKAYVPQSSWIQTGTIRENILFG----KDMRQSFYEEVLEGCALNQDIEMWADG 709
+ YVPQ + GT+R+NI G D R E + + +G
Sbjct: 73 PADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDER---ILRAAELAGVTDFVNKHPNG 129
Query: 710 DLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS 769
+GERG LSGGQ+Q + LARA+ ++ + + D+P SA+D ++ L ++ L LL
Sbjct: 130 LDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKER-LRQLLG 188
Query: 770 QKTVLYTTHQLEFLDAADLVLVMKDGKI 797
KT++ TH+ LD D ++VM G+I
Sbjct: 189 DKTLIIITHRPSLLDLVDRIIVMDSGRI 216
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 3e-29
Identities = 70/207 (33%), Positives = 109/207 (52%), Gaps = 20/207 (9%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSIL-------GEIPRISGAAIK------VHGKKAYV 664
+ I G VA+ GS G GKS+++S + GEI + G I+ + + V
Sbjct: 24 LTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEIL-LDGVDIRDLNLRWLRSQIGLV 82
Query: 665 PQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCAL-NQD--IEMWADGDLSVVGERGINL 721
Q + GTI ENI +GK EEV E N I DG ++VGERG L
Sbjct: 83 SQEPVLFDGTIAENIRYGKPDATD--EEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQL 140
Query: 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLE 781
SGGQKQRI +ARA+ N + + D+ SA+DA + L ++ L + +T + H+L
Sbjct: 141 SGGQKQRIAIARALLRNPKILLLDEATSALDAES-EKLVQEALDRAMKGRTTIVIAHRLS 199
Query: 782 FLDAADLVLVMKDGKIEQSGKYEDLIA 808
+ ADL+ V+++G++ + G +++L+A
Sbjct: 200 TIRNADLIAVLQNGQVVEQGTHDELMA 226
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 8e-28
Identities = 94/317 (29%), Positives = 140/317 (44%), Gaps = 42/317 (13%)
Query: 1005 LAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAP 1064
L L FAL+ LL I I+ W +IL + Q A E R R A
Sbjct: 267 LIDLPFALLFLLVIAIIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNA- 325
Query: 1065 ILHHFSESIAGATTIRCFNQENRFL---LRSHSLIDDYSCVTFHNCGTMEWLCLRI--NL 1119
ES++G TI+ N E RF ++ + + L R NL
Sbjct: 326 ---VLVESLSGLETIKALNAEGRFQRRWEQTVAALARSG------------LKSRFLSNL 370
Query: 1120 LFNFAFFL-----VLIILVTLPR-SAIDPSLAGLAATYGLNLNVLQ-----AWVIWNLCN 1168
NFA F+ V I++V + S + ++ GL A L+ L A ++
Sbjct: 371 ATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQ 430
Query: 1169 VENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPS-SGKIELENLLVQYNPTLPMVLKG 1227
+ + S++ ++Q +P E P P G+IE N+ Y L
Sbjct: 431 AKTALQSLDELMQ---LPVERP----EGTRFLHRPRLQGEIEFRNVSFAYPGQETPALDN 483
Query: 1228 ITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286
++ T PGEK + ++GR GSGKSTL++ L + +P+ G +L+DGVDI I DLR +
Sbjct: 484 VSLTIRPGEK-VAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIG 542
Query: 1287 IIPQDPMLFQGTVRTNL 1303
+PQDP LF GT+R N+
Sbjct: 543 YVPQDPRLFYGTLRDNI 559
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 2e-27
Identities = 62/184 (33%), Positives = 96/184 (52%), Gaps = 16/184 (8%)
Query: 623 GSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-------------AYVPQSSW 669
G +VA+ G G+GKS+LL+ +LG + G+ I V+G A+VPQ +
Sbjct: 348 GERVALVGPSGAGKSTLLNLLLGFVDPTEGS-IAVNGVPLADADADSWRDQIAWVPQHPF 406
Query: 670 IQTGTIRENILFGK-DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728
+ GTI ENI + D + E LE L++ + G + +GE G LSGGQ QR
Sbjct: 407 LFAGTIAENIRLARPDASDAEIREALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQR 466
Query: 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADL 788
+ LARA ++ + + D+P + +DA T + + L L +TVL TH+L AD
Sbjct: 467 LALARAFLRDAPLLLLDEPTAHLDAETEAEVLEA-LRALAQGRTVLLVTHRLALAALADR 525
Query: 789 VLVM 792
++V+
Sbjct: 526 IVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 4e-27
Identities = 87/386 (22%), Positives = 162/386 (41%), Gaps = 30/386 (7%)
Query: 929 LIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILN 988
+IG+ + L G SF LL+ ++ K + + + M + P+SFFD P+ +L+
Sbjct: 60 VIGLAV-LRGICSFV---STYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLS 115
Query: 989 RCSTDQSTV---DTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQA 1045
R + D V TD L +I L +++ S WQ+ + +V+L +
Sbjct: 116 RITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYS---WQLTLIVVVMLPVLSILMR 172
Query: 1046 YYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQE----NRFLLRSHSLIDDYSC 1101
R +++ + + E++ G ++ F + RF S+
Sbjct: 173 RVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMK 232
Query: 1102 VTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAW 1161
+T L+ + A L +++ + L ++ AG + + L
Sbjct: 233 MT----SAGSISSPITQLIASLA--LAVVLFIALFQAQAGSLTAGDFTAFITAMIALIR- 285
Query: 1162 VIWNLCNVENKM----ISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQY 1217
+ +L NV M + E + + P E +R + G +E N+ +Y
Sbjct: 286 PLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKD---TGTRAIER--ARGDVEFRNVTFRY 340
Query: 1218 NPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG 1277
L I+ + + +VGR+GSGKSTL+ + R EP G+IL+DG D++
Sbjct: 341 PGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYT 400
Query: 1278 LQDLRSRLSIIPQDPMLFQGTVRTNL 1303
L LR +++++ QD +LF T+ N+
Sbjct: 401 LASLRRQVALVSQDVVLFNDTIANNI 426
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 7e-27
Identities = 43/112 (38%), Positives = 63/112 (56%), Gaps = 1/112 (0%)
Query: 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGR 1265
G+IE EN+ Y+ P VLK I + + + +VG TG+GK+TLI L R +P G+
Sbjct: 1 GEIEFENVNFSYDEKKP-VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQ 59
Query: 1266 ILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEV 1317
ILIDG+DI I + LRS + ++ QD LF GT+ N+ ++ E
Sbjct: 60 ILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIE 111
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 1e-26
Identities = 62/196 (31%), Positives = 93/196 (47%), Gaps = 23/196 (11%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSIL-------GEIPRISGAAIKVHGKKAY------VP 665
I G KV + G GSGKSSLL ++ G I I G I G +P
Sbjct: 26 SIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSI-LIDGVDISKIGLHDLRSRISIIP 84
Query: 666 QSSWIQTGTIRENILFGKDMRQSFYEE----VLEGCALNQDIEMWADGDLSVVGERGINL 721
Q + +GTIR N+ D + +E LE L + +E G +VV E G NL
Sbjct: 85 QDPVLFSGTIRSNL----DPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENL 140
Query: 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLE 781
S GQ+Q + LARA+ S + + D+ ++VD T L ++ + TVL H+L+
Sbjct: 141 SVGQRQLLCLARALLRKSKILVLDEATASVDPET-DALIQKTIREAFKDCTVLTIAHRLD 199
Query: 782 FLDAADLVLVMKDGKI 797
+ +D +LV+ G++
Sbjct: 200 TIIDSDRILVLDKGRV 215
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 3e-26
Identities = 43/116 (37%), Positives = 63/116 (54%), Gaps = 7/116 (6%)
Query: 1206 GKIELENLLVQYNPTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGG 1264
G+IE N+ Y L ++ T GEK + ++GR GSGKSTL++ L + +P+ G
Sbjct: 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEK-VAIIGRVGSGKSTLLKLLAGLYKPTSG 59
Query: 1265 RILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNL---DPLEQHSDQEIWEV 1317
+L+DG DI + DLR + +PQD LF GT+R N+ PL D+ I
Sbjct: 60 SVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPL--ADDERILRA 113
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 114 bits (286), Expect = 6e-26
Identities = 75/262 (28%), Positives = 126/262 (48%), Gaps = 26/262 (9%)
Query: 565 RIQEFIKEDNQKKPITEPTSKASDV--AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMK 622
R+ E ++ + K P + + I+ E +A+ AR + + LT +
Sbjct: 310 RLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLT----VRP 365
Query: 623 GSKVAVCGSVGSGKSSLLSSIL-------GEIPRISGAAIK------VHGKKAYVPQSSW 669
G VA+ G G+GKS+L +L G I + G ++ + + A VPQ
Sbjct: 366 GETVALVGPSGAGKSTLFQLLLRFYDPQSGRI-LLDGVDLRQLDPAELRARMALVPQDPV 424
Query: 670 IQTGTIRENILFGKDMRQSFYEEVLEGCALNQD---IEMWADGDLSVVGERGINLSGGQK 726
+ ++ ENI +G+ + EEV I +G + +GERG+ LSGGQ+
Sbjct: 425 LFAASVMENIRYGRP--DATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQR 482
Query: 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAA 786
QRI +ARA+ ++ + + D+ SA+DA + L +Q L L+ +T L H+L + A
Sbjct: 483 QRIAIARAILKDAPILLLDEATSALDAES-EQLVQQALETLMKGRTTLIIAHRLATVLKA 541
Query: 787 DLVLVMKDGKIEQSGKYEDLIA 808
D ++VM G+I G + +LIA
Sbjct: 542 DRIVVMDQGRIVAQGTHAELIA 563
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 3e-25
Identities = 77/228 (33%), Positives = 115/228 (50%), Gaps = 21/228 (9%)
Query: 623 GSKVAVCGSVGSGKSSLLSSIL-------GEI--PRISGAAIKVH---GKKAYVPQSSWI 670
G + +CG GSGKS+LLS I G+I I +++ + A V Q+ ++
Sbjct: 341 GQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFL 400
Query: 671 QTGTIRENILFGK-DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729
+ T+ NI G+ D Q E V +++ DI G + VGERG+ LSGGQKQRI
Sbjct: 401 FSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRI 460
Query: 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLV 789
+ARA+ N+++ I DD SAVD T H L +TV+ + H+L L A +
Sbjct: 461 SIARALLLNAEILILDDALSAVDGRT-EHQILHNLRQWGEGRTVIISAHRLSALTEASEI 519
Query: 790 LVMKDGKIEQSGKYEDLIADQN--SELVR--QMKAHRKSLDQVNPPQE 833
LVM+ G I Q G ++ L ++ R Q++A +LD +E
Sbjct: 520 LVMQHGHIAQRGNHDQLAQQSGWYRDMYRYQQLEA---ALDDAPEIRE 564
|
Length = 569 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 4e-25
Identities = 105/416 (25%), Positives = 180/416 (43%), Gaps = 44/416 (10%)
Query: 419 FAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKAT---SETLKSMRVLKLLSWEQE 475
AL + V+V L NR + + EA +A I+A L++ V++ +
Sbjct: 145 ILALGGAV-VLVGLALLNNRATK--KPLKEATEASIRANNLADSALRNAEVIEAMGMMGN 201
Query: 476 FLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLVS--VITFGVCILLKTPLTSGAVL 533
K+ R + ++ L ++ V+ G + + +T G ++
Sbjct: 202 LTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLGLGAYLAIDGEITPGMMI 261
Query: 534 -SALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKP---ITEPTSKASDV 589
++ R L PI + + + R+ E + + P + EP S
Sbjct: 262 AGSILVGRALA-PIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPAMPLPEPEGHLSVE 320
Query: 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP- 648
+ I KKPT++ + G +A+ G GSGKS+L I+G P
Sbjct: 321 NVTI---------VPPGGKKPTLRGIS-FSLQAGEALAIIGPSGSGKSTLARLIVGIWPP 370
Query: 649 -----RISGAAIK-----VHGKK-AYVPQSSWIQTGTIRENIL-FGKDMRQSFYEEVLEG 696
R+ GA +K GK Y+PQ + GT+ ENI FG++ E+++E
Sbjct: 371 TSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADP---EKIIEA 427
Query: 697 CALNQDIEMWA---DGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDA 753
L E+ DG +V+G G LSGGQ+QRI LARA+Y + + + D+P S +D
Sbjct: 428 AKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDE 487
Query: 754 HTGTHLFKQCLMGLLSQK-TVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808
G + L ++ TV+ TH+ L D +LV++DG+I + G+ ++++A
Sbjct: 488 -EGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 4e-25
Identities = 108/453 (23%), Positives = 193/453 (42%), Gaps = 74/453 (16%)
Query: 395 IWLLPVQVFLALVILYKN-------LGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIM 447
+W+L V + L ++ +N L + P +A +++ N+ + M
Sbjct: 280 MWIL---VIVGLFLVRQNMLLFLLSLLSIPVYAV------IIILFKRTFNKL---NHDAM 327
Query: 448 EAKDARIKATSETLKSMRVLKLLSWEQE-----------FLKKLLRLREIER-DSLKKYL 495
+A + E L + +K L+ E E +L K + ++ ++ K +
Sbjct: 328 QANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAV 387
Query: 496 YTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISM 555
+ W LV ++ LT G +++ A P+ N+ L
Sbjct: 388 TKLILNVVILWTGAYLV----------MRGKLTLGQLITFNALLSYFLTPLENIINLQPK 437
Query: 556 IAQTKVSLYRIQEFI---KEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTI 612
+ +V+ R+ E E KK TE + D+ I+ + Y + +
Sbjct: 438 LQAARVANNRLNEVYLVDSEFINKKKRTELNNLNGDIVINDVSYSYGYGSN--------- 488
Query: 613 KLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSIL-------GEIPRISGAAIKVHGKKA-- 662
L+D + I SK + G GSGKS+L ++ GEI ++G ++K +
Sbjct: 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEI-LLNGFSLKDIDRHTLR 547
Query: 663 ----YVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCAL---NQDIEMWADGDLSVVG 715
Y+PQ +I +G+I EN+L G +E+ C + DIE G + +
Sbjct: 548 QFINYLPQEPYIFSGSILENLLLGAK-ENVSQDEIWAACEIAEIKDDIENMPLGYQTELS 606
Query: 716 ERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLY 775
E G ++SGGQKQRI LARA+ ++S V I D+ S +D T + L L KT+++
Sbjct: 607 EEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLN--LQDKTIIF 664
Query: 776 TTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808
H+L +D ++V+ GKI + G +++L+
Sbjct: 665 VAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLD 697
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 1e-24
Identities = 44/96 (45%), Positives = 62/96 (64%), Gaps = 1/96 (1%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
IE EN+ Y+P P VLK ++ T P KK+ +VG +GSGKST+++ LFR + S G IL
Sbjct: 1 IEFENVTFAYDPGRP-VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSIL 59
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNL 1303
IDG DI + L LR + ++PQD +LF T+ N+
Sbjct: 60 IDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNI 95
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 1e-24
Identities = 62/227 (27%), Positives = 99/227 (43%), Gaps = 26/227 (11%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK------------AYVP 665
++ G + G G+GK++LL + G + SG I V G YVP
Sbjct: 26 FEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGE-ILVLGYDVVKEPAKVRRRIGYVP 84
Query: 666 QS-SWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWAD--GDLSVVGERGINLS 722
Q S T+REN+ F + EE + IE + G ++ LS
Sbjct: 85 QEPSLYPELTVRENLEFFARLYGLSKEEA------EERIEELLELFGLEDKANKKVRTLS 138
Query: 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--KTVLYTTHQL 780
GG KQR+ +A A+ + ++ I D+P S +D + + L L + T+L +TH L
Sbjct: 139 GGMKQRLSIALALLHDPELLILDEPTSGLDPES-RREIWELLRELAKEGGVTILLSTHIL 197
Query: 781 EFLDA-ADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLD 826
E + D V+++ DGKI G E+L + V +++ R L
Sbjct: 198 EEAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGVIELEPERLELA 244
|
Length = 293 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 3e-24
Identities = 45/112 (40%), Positives = 70/112 (62%), Gaps = 1/112 (0%)
Query: 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGR 1265
G++ +++L +Y VL+ I+ + +++G++GRTGSGKSTL+ A R++ + G
Sbjct: 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGD 59
Query: 1266 ILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEV 1317
I IDGV + + LQ R +IPQ +F GT R NLDP + SD+EIW+V
Sbjct: 60 IQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKV 111
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 2e-23
Identities = 62/207 (29%), Positives = 103/207 (49%), Gaps = 20/207 (9%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------------KKAYV 664
++I G V + G GSGKS+L I +G + V G + V
Sbjct: 23 LRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGR-VLVDGHDLALADPAWLRRQVGVV 81
Query: 665 PQSSWIQTGTIRENILF---GKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721
Q + + +IR+NI G M + L G + I +G ++VGE+G L
Sbjct: 82 LQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGA--HDFISELPEGYDTIVGEQGAGL 139
Query: 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLE 781
SGGQ+QRI +ARA+ N + IFD+ SA+D + H + + + + +TV+ H+L
Sbjct: 140 SGGQRQRIAIARALIHNPRILIFDEATSALDYES-EHAIMRNMHDICAGRTVIIIAHRLS 198
Query: 782 FLDAADLVLVMKDGKIEQSGKYEDLIA 808
+ AD ++VM+ G+I + G +++L+A
Sbjct: 199 TVKNADRIIVMEKGRIVEQGSHDELLA 225
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 4e-23
Identities = 103/472 (21%), Positives = 188/472 (39%), Gaps = 49/472 (10%)
Query: 366 FAGPSSGIIINMINVDVERIG----DFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAA 421
F +G +++ I D E++ D F+ + R L + L +V+LY +
Sbjct: 105 FDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETL--TVIGLFIVLLYYSWQLTLIVVV 162
Query: 422 LFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLL 481
+ + +++ ++ R R I + ETL+ RV+KL + ++
Sbjct: 163 MLPVLSILMRR--VSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFD 220
Query: 482 RLREIERDSLKKYLYTCSAIAFL--FWASPTLVSVITFGVCILLKTPLTSGAVLSALATF 539
+ R K S + + AS L V+ + LT+G + +
Sbjct: 221 AVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAM 280
Query: 540 RILQEPIYNLPELISMIAQTKVSLYRIQEFIKE----DNQKKPITEPTSKASDVAIDIEA 595
L P+ +L + + + + + + + D + I +
Sbjct: 281 IALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGTRAIERARGDVEFRNVTFR- 339
Query: 596 GEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR---ISG 652
Y R P + + I G VA+ G GSGKS+L++ I PR
Sbjct: 340 --YPGRDR------PALDSIS-LVIEPGETVALVGRSGSGKSTLVNLI----PRFYEPDS 386
Query: 653 AAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCA- 698
I + G + A V Q + TI NI +G Q+ E+ A
Sbjct: 387 GQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYG-RTEQADRAEIERALAA 445
Query: 699 --LNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTG 756
++ G + +GE G+ LSGGQ+QR+ +ARA+ ++ + I D+ SA+D +
Sbjct: 446 AYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESE 505
Query: 757 THLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808
+ + L L+ +T L H+L ++ AD ++VM DG+I + G + +L+A
Sbjct: 506 RLV-QAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLA 556
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 4e-23
Identities = 68/218 (31%), Positives = 111/218 (50%), Gaps = 22/218 (10%)
Query: 608 KKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP------RISGAAIKVHGKK 661
KKP +K + G + + G GSGKS+L ++G P R+ GA ++ ++
Sbjct: 348 KKPILKGIS-FALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDRE 406
Query: 662 A------YVPQSSWIQTGTIRENIL-FGKDMRQSFYEEVLEGCALNQDIEMWA---DGDL 711
Y+PQ + GTI ENI FG++ E+V+E L E+ G
Sbjct: 407 QLGRHIGYLPQDVELFDGTIAENIARFGEEADP---EKVIEAARLAGVHELILRLPQGYD 463
Query: 712 SVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK 771
+ +GE G LSGGQ+QRI LARA+Y + + + D+P S +D+ G ++ ++
Sbjct: 464 TRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDS-EGEAALAAAILAAKARG 522
Query: 772 -TVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808
TV+ H+ L + D +LV++DG+I G E+++A
Sbjct: 523 GTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLA 560
|
Length = 580 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 98.8 bits (247), Expect = 6e-23
Identities = 36/95 (37%), Positives = 54/95 (56%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
+E +N+ +Y P VL+ I+ P + + +VG +GSGKSTL+ + R + GRIL
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTN 1302
IDG D+ L LR ++ ++ QD LF TV N
Sbjct: 61 IDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAEN 95
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 95.0 bits (237), Expect = 2e-22
Identities = 54/180 (30%), Positives = 80/180 (44%), Gaps = 45/180 (25%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIREN 678
+ G VA+ G GSGKS+LL +I G + SG +
Sbjct: 21 TLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL----------------------- 57
Query: 679 ILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSN 738
+ GKD+ + EE+ V + LSGGQ+QR+ LARA+ N
Sbjct: 58 -IDGKDIAKLPLEELRRRI--------------GYVPQ----LSGGQRQRVALARALLLN 98
Query: 739 SDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-KTVLYTTHQLEFLD-AADLVLVMKDGK 796
D+ + D+P S +D + + L L + +TV+ TH E + AAD V+V+KDGK
Sbjct: 99 PDLLLLDEPTSGLDPASR-ERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 4e-22
Identities = 86/316 (27%), Positives = 148/316 (46%), Gaps = 58/316 (18%)
Query: 526 PLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTS- 584
L + V +ALA F L P+ + Q S RI E QK +T PT+
Sbjct: 278 ALIALFVFAALAAFEALM-PV---AGAFQHLGQVIASARRINEIT---EQKPEVTFPTTS 330
Query: 585 --KASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSS 642
A V++ + + + + + K + L I G KVA+ G G GKS+LL
Sbjct: 331 TAAADQVSLTLNNVSFTYPDQPQPVLK-GLSLQ----IKAGEKVALLGRTGCGKSTLLQL 385
Query: 643 IL-------GEIPRISGAAIKVHGKKA------YVPQSSWIQTGTIRENILFGKD----- 684
+ GEI ++G I + + A V Q + + T+R+N+L
Sbjct: 386 LTRAWDPQQGEI-LLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDE 444
Query: 685 -----MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNS 739
++Q E++LE ++ + W +GE G LSGG+++R+ +ARA+ ++
Sbjct: 445 ALIEVLQQVGLEKLLED---DKGLNAW-------LGEGGRQLSGGEQRRLGIARALLHDA 494
Query: 740 DVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ----KTVLYTTHQLEFLDAADLVLVMKDG 795
+ + D+P +DA T ++ ++ LL++ KTVL TH+L L+ D + VM +G
Sbjct: 495 PLLLLDEPTEGLDAET-----ERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNG 549
Query: 796 KIEQSGKYEDLIADQN 811
+I + G +++L+A Q
Sbjct: 550 QIIEQGTHQELLAQQG 565
|
Length = 574 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 95.7 bits (239), Expect = 4e-22
Identities = 62/205 (30%), Positives = 100/205 (48%), Gaps = 41/205 (20%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK--------AYVPQSSWI 670
++ G +A+ G G+GKS+LL +ILG + SG+ I+V GK YVPQ I
Sbjct: 21 EVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGS-IRVFGKPLEKERKRIGYVPQRRSI 79
Query: 671 QTG---TIRENIL--------FGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719
++R+ +L + + ++ +V E AL LS + +R I
Sbjct: 80 DRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDE--AL-------ERVGLSELADRQI 130
Query: 720 -NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-----KTV 773
LSGGQ+QR+ LARA+ + D+ + D+PF+ VD T ++ + LL + T+
Sbjct: 131 GELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKT-----QEDIYELLRELRREGMTI 185
Query: 774 LYTTHQLE-FLDAADLVLVMKDGKI 797
L TH L L+ D VL++ +
Sbjct: 186 LVVTHDLGLVLEYFDRVLLLNRTVV 210
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 94.1 bits (235), Expect = 3e-21
Identities = 41/98 (41%), Positives = 66/98 (67%), Gaps = 3/98 (3%)
Query: 1208 IELENLLVQYNPTLP--MVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGR 1265
IE +N+ +Y P+ P +LKG++ T P K + +VG +G GKST++ L R +P+ G
Sbjct: 1 IEFKNVSFRY-PSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGE 59
Query: 1266 ILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNL 1303
IL+DGVDI + L+ LRS++ ++ Q+P+LF GT+ N+
Sbjct: 60 ILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENI 97
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 92.9 bits (232), Expect = 4e-21
Identities = 60/214 (28%), Positives = 93/214 (43%), Gaps = 34/214 (15%)
Query: 605 ENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK--- 661
+ +P + + I KG V + G GSGKS+LL + G + SG + V GK
Sbjct: 10 PDGARPALDDIS-LTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGE-VLVDGKDLTK 67
Query: 662 ----------AYVPQ--SSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADG 709
V Q T+ E + FG + EE+ E + E
Sbjct: 68 LSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEE-----RVEEALELV 122
Query: 710 DLSVVGERGI-NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL 768
L + +R LSGGQKQR+ +A + + D+ + D+P + +D L + LL
Sbjct: 123 GLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLE-----LL 177
Query: 769 SQ-----KTVLYTTHQLEFLDA-ADLVLVMKDGK 796
+ KT++ TH L+ L AD V+V++DGK
Sbjct: 178 KKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 93.8 bits (234), Expect = 6e-21
Identities = 63/223 (28%), Positives = 103/223 (46%), Gaps = 43/223 (19%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-------------AYV 664
I KG + G GSGKS+LL + G + SG + + GK AYV
Sbjct: 23 FSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGE-VLLDGKDIASLSPKELAKKLAYV 81
Query: 665 PQSSWIQTG-TIRENILFGKDMRQSFYEEVLEGCALNQDIE--MWADGDLSVVG-----E 716
PQS G T+ E +L G+ + + +D E A L ++G +
Sbjct: 82 PQSPSAPFGLTVYELVLLGRYPHLGLFGRPSK-----EDEEIVEEA---LELLGLEHLAD 133
Query: 717 RGIN-LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ----- 770
R ++ LSGG++QR+ +ARA+ + + + D+P S +D H + ++ LL
Sbjct: 134 RPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIA---HQIE--VLELLRDLNREK 188
Query: 771 -KTVLYTTHQLEF-LDAADLVLVMKDGKIEQSGKYEDLIADQN 811
TV+ H L AD ++++KDGKI G E+++ ++N
Sbjct: 189 GLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTEEN 231
|
Length = 258 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 93.1 bits (232), Expect = 8e-21
Identities = 67/204 (32%), Positives = 100/204 (49%), Gaps = 50/204 (24%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK----------AYVPQS 667
+ + KG A+ G G+GKS+LL +ILG + SG IK+ GK YVPQ
Sbjct: 25 LSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGE-IKIFGKPVRKRRKRLRIGYVPQK 83
Query: 668 SWIQTG---TIRENILFGKDMRQSFY--------EEVLEGCALNQDIEMWADGDLSVVGE 716
S + T+++ +L G+ ++ ++ E+V E AL + + M + +
Sbjct: 84 SSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDE--ALER-VGMED------LRD 134
Query: 717 RGI-NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ----- 770
R I LSGGQKQR+ LARA+ N D+ + D+PF+ VD ++ + LL +
Sbjct: 135 RQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAG-----QKEIYDLLKELRQEG 189
Query: 771 KTVLYTTHQLEFLDAADLVLVMKD 794
KTVL TH DL LVM
Sbjct: 190 KTVLMVTH--------DLGLVMAY 205
|
Length = 254 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 93.0 bits (232), Expect = 8e-21
Identities = 62/200 (31%), Positives = 93/200 (46%), Gaps = 38/200 (19%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILG-EIP-----RISGAAIKVHGKK-AYVPQSS-- 668
+ + KG VA+ G G GKS+LL I G E P + G + G YV Q
Sbjct: 24 LSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDAL 83
Query: 669 --WIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN------ 720
W+ T+ +N+ G ++R E E A L +VG G
Sbjct: 84 LPWL---TVLDNVALGLELRGKSKAEARE----------RAKELLELVGLAGFEDKYPHQ 130
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTH 778
LSGG +QR+ +ARA+ + + + D+PF A+DA T L + L+ L +KTVL TH
Sbjct: 131 LSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDE-LLRLWEETRKTVLLVTH 189
Query: 779 QLE---FLDAADLVLVMKDG 795
++ +L AD V+V+ +
Sbjct: 190 DVDEAVYL--ADRVVVLSNR 207
|
Length = 248 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 96.3 bits (240), Expect = 3e-20
Identities = 67/265 (25%), Positives = 113/265 (42%), Gaps = 27/265 (10%)
Query: 532 VLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKAS---D 588
VL LA F E LP + + + + RI E + + P + A
Sbjct: 277 VLLPLAAF----EAFAALPAAAQQLTRVRAAAERIVEVLDAAGPVAEGSAPAAGAVGLGK 332
Query: 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP 648
+++ + ++ L G +VA+ G GSGKS+LL+++ G +
Sbjct: 333 PTLELRDLSAGYPGAPPVLDGVSLDLP------PGERVAILGPSGSGKSTLLATLAGLLD 386
Query: 649 RISG------------AAIKVHGKKAYVPQSSWIQTGTIRENILFGK-DMRQSFYEEVLE 695
+ G +V + + Q + + T+REN+ + D LE
Sbjct: 387 PLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDTTVRENLRLARPDATDEELWAALE 446
Query: 696 GCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHT 755
L + DG +V+GE G LSGG++QR+ LARA+ +++ + + D+P +DA T
Sbjct: 447 RVGLADWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAET 506
Query: 756 GTHLFKQCLMGLLSQKTVLYTTHQL 780
L + L LS +TV+ TH L
Sbjct: 507 ADELLEDLLAA-LSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 93.1 bits (232), Expect = 4e-20
Identities = 65/205 (31%), Positives = 97/205 (47%), Gaps = 22/205 (10%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKA-----------YVPQ 666
+ I KG V + G G GK++LL I G + S I + G+ V Q
Sbjct: 26 LDIKKGEFVTLLGPSGCGKTTLLRMIAG-FEQPSSGEILLDGEDITDVPPEKRPIGMVFQ 84
Query: 667 S-SWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN-LSGG 724
S + T+ EN+ FG +R+ + ++ E L +R + LSGG
Sbjct: 85 SYALFPHMTVEENVAFGLKVRKKLKKAEIKARVE----EALELVGLEGFADRKPHQLSGG 140
Query: 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--KTVLYTTH-QLE 781
Q+QR+ LARA+ V + D+P SA+DA + K+ L L + T +Y TH Q E
Sbjct: 141 QQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKE-LKELQRELGITFVYVTHDQEE 199
Query: 782 FLDAADLVLVMKDGKIEQSGKYEDL 806
L +D + VM DG+IEQ G E++
Sbjct: 200 ALAMSDRIAVMNDGRIEQVGTPEEI 224
|
Length = 352 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 90.4 bits (225), Expect = 5e-20
Identities = 57/217 (26%), Positives = 91/217 (41%), Gaps = 43/217 (19%)
Query: 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK--------------AYVPQ- 666
KG +V + G GSGKS+LL + G + SG + V G V Q
Sbjct: 29 KGERVLLIGPNGSGKSTLLKLLNGLLKPTSGE-VLVDGLDTSSEKSLLELRQKVGLVFQN 87
Query: 667 --SSWIQTGTIRENILFG--------KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGE 716
T+ + + FG +++ E LE L + ++
Sbjct: 88 PDDQLFGP-TVEDEVAFGLENLGLPREEIE-ERVAEALELVGLEELLDRPPF-------- 137
Query: 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--KTVL 774
NLSGGQKQR+ +A + ++ + D+P + +D G + L L + KT++
Sbjct: 138 ---NLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPK-GRRELLELLKKLKEEGGKTII 193
Query: 775 YTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDLIADQ 810
TH LE + + AD V+V+ DGKI G ++ D
Sbjct: 194 IVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230
|
Length = 235 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 95.0 bits (237), Expect = 6e-20
Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 4/134 (2%)
Query: 1187 SEAPLVIKNSRPSPE--WPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRT 1244
E+P+ S E +I LENL +Y P L + T + +VG +
Sbjct: 298 LESPVATPGSGEKAEVANEPPIEISLENLSFRY-PDGKPALSDLNLTIKAGQLTALVGAS 356
Query: 1245 GSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLD 1304
G+GKSTL+ L + P+ G I ++G+D+ + + R ++S + Q+P LF GT+R N+
Sbjct: 357 GAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENIL 416
Query: 1305 PLE-QHSDQEIWEV 1317
SD+EI
Sbjct: 417 LARPDASDEEIIAA 430
|
Length = 559 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 95.6 bits (238), Expect = 6e-20
Identities = 89/321 (27%), Positives = 153/321 (47%), Gaps = 33/321 (10%)
Query: 510 TLVSVITFGVCILLKTPLTSGAVLSALATF--RILQEPIYNLPELISMIAQTKVSLYRIQ 567
T ++ FG +++ L+ G L A R+ Q P+ L +L QT ++L R+
Sbjct: 375 TFAILLWFGAHLVIGGALSPGQ-LVAFNMLAGRVTQ-PVLRLAQLWQDFQQTGIALERLG 432
Query: 568 EFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFK----KPTIKLTDKMKIMKG 623
+ + TEP S A A+ G + F+ P + + I G
Sbjct: 433 DILNSP------TEPRS-AGLAALPELRGAITF--ENIRFRYAPDSPEVLSNLNLDIKPG 483
Query: 624 SKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWI--QTGTI-RENIL 680
+ + G GSGKS+L + +L + + V G + +W+ Q G + +EN+L
Sbjct: 484 EFIGIVGPSGSGKSTL-TKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVL 542
Query: 681 FGKDMRQSF--------YEEVLEGCAL---NQDIEMWADGDLSVVGERGINLSGGQKQRI 729
F + +R + +E V+ L + I G + VGE+G NLSGGQ+QRI
Sbjct: 543 FSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRI 602
Query: 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLV 789
+ARA+ N + IFD+ SA+D + L + + + +TV+ H+L + A D +
Sbjct: 603 AIARALVGNPRILIFDEATSALDYES-EALIMRNMREICRGRTVIIIAHRLSTVRACDRI 661
Query: 790 LVMKDGKIEQSGKYEDLIADQ 810
+V++ G+I +SG++E+L+A Q
Sbjct: 662 IVLEKGQIAESGRHEELLALQ 682
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 6e-20
Identities = 46/183 (25%), Positives = 79/183 (43%), Gaps = 30/183 (16%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENI 679
+ +G K+A+ G GSGKS+LL + G PQ I +
Sbjct: 25 LKQGEKIALLGRSGSGKSTLLQLLTG----------------DLKPQQGEITLD--GVPV 66
Query: 680 L-FGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSN 738
K + LNQ ++ + +G R SGG++QR+ LAR + +
Sbjct: 67 SDLEKALSSLI-------SVLNQRPYLFDTTLRNNLGRR---FSGGERQRLALARILLQD 116
Query: 739 SDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIE 798
+ + + D+P +D T L + +L KT+++ TH L ++ D +L +++GKI
Sbjct: 117 APIVLLDEPTVGLDPITERQLLSL-IFEVLKDKTLIWITHHLTGIEHMDKILFLENGKII 175
Query: 799 QSG 801
G
Sbjct: 176 MQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 90.3 bits (225), Expect = 8e-20
Identities = 69/226 (30%), Positives = 105/226 (46%), Gaps = 37/226 (16%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRE 677
+ + +G +A+ G GSGKS+LL ILG + G I + G+ +PQ S + IR+
Sbjct: 29 LDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGE-ILIDGED--IPQLSEEELYEIRK 85
Query: 678 NI--------LFGKDMRQSFYEEV----LEGCALNQD-IEMWADGDLSVVGERGIN---- 720
+ LF + + +E V E L + I L +VG RG
Sbjct: 86 RMGVLFQQGALFS-SL--TVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLY 142
Query: 721 ---LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGT---HLFK--QCLMGLLSQKT 772
LSGG ++R+ LARA+ + ++ D+P S +D + L + +GL T
Sbjct: 143 PSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGL----T 198
Query: 773 VLYTTHQL-EFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
V+ TH L L AD V V+ DGK+ G E+L+A + VRQ
Sbjct: 199 VIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLASDDP-WVRQ 243
|
Length = 263 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 88.7 bits (221), Expect = 1e-19
Identities = 62/197 (31%), Positives = 94/197 (47%), Gaps = 38/197 (19%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIP------RISGAAIKVHGKK-AYVPQSS-- 668
+ + +G VA+ G G GKS+LL I G + G + G YV Q
Sbjct: 25 LSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDAL 84
Query: 669 --WIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI------N 720
W+ T+ +N+ G +++ E E A+ L +VG G
Sbjct: 85 LPWL---TVLDNVALGLELQGVPKAEARER----------AEELLELVGLSGFENAYPHQ 131
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--KTVLYTTH 778
LSGG +QR+ LARA+ + DV + D+PFSA+DA T L ++ L+ + + KTVL TH
Sbjct: 132 LSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQL-QEELLDIWRETGKTVLLVTH 190
Query: 779 QLE---FLDAADLVLVM 792
++ FL AD V+V+
Sbjct: 191 DIDEAVFL--ADRVVVL 205
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 89.7 bits (223), Expect = 2e-19
Identities = 52/268 (19%), Positives = 91/268 (33%), Gaps = 11/268 (4%)
Query: 890 GALVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSG---GSSFFILG 946
L L L ++ D R LI + I L + G
Sbjct: 8 LILAGATALVFPLL------LGRFLDSLIDGN-GDERSSLISLAILLIAVGVLQGLLLQG 60
Query: 947 RAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLA 1006
L + + +RLF ++ + P+SFFD+ + +R + D S + + +L
Sbjct: 61 SFYLGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGDKLG 120
Query: 1007 GLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPIL 1066
+L ++ I+M W++ + L IL + I A R+L R A
Sbjct: 121 LFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKAYAKAG 180
Query: 1067 HHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFF 1126
ES++G T++ F +E L R ++D T L+ ++
Sbjct: 181 SVAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGITQLISYLSYA 240
Query: 1127 LVLIILVTLP-RSAIDPSLAGLAATYGL 1153
L L L + + GL
Sbjct: 241 LALWFGAYLVISGGLSVGTVFAFLSLGL 268
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 88.3 bits (219), Expect = 2e-19
Identities = 59/191 (30%), Positives = 96/191 (50%), Gaps = 20/191 (10%)
Query: 623 GSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-------------AYVPQSSW 669
G A+ G GSGKS++++ +L + G + + GK + V Q
Sbjct: 40 GEVTALVGPSGSGKSTVVA-LLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPV 98
Query: 670 IQTGTIRENILFGKDMRQSFYEEVLE---GCALNQDIEMWADGDLSVVGERGINLSGGQK 726
+ ++++NI +G ++ +E V E + I A G + VGE+G LSGGQK
Sbjct: 99 LFARSLQDNIAYG--LQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQK 156
Query: 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAA 786
QR+ +ARA+ N V I D+ SA+DA + +Q L ++TVL H+L ++ A
Sbjct: 157 QRVAIARALIRNPQVLILDEATSALDAES-EQQVQQALYDWPERRTVLVIAHRLSTVERA 215
Query: 787 DLVLVMKDGKI 797
D +LV+ G+I
Sbjct: 216 DQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 87.6 bits (218), Expect = 2e-19
Identities = 61/196 (31%), Positives = 89/196 (45%), Gaps = 23/196 (11%)
Query: 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-----------AYVPQS-SW 669
G +A+ G G GK++LL I G R I + G+ V Q +
Sbjct: 25 PGEFLALLGPSGCGKTTLLRLIAGLE-RPDSGEILIDGRDVTGVPPERRNIGMVFQDYAL 83
Query: 670 IQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN-LSGGQKQR 728
T+ ENI FG +R E+ + E+ L + R + LSGGQ+QR
Sbjct: 84 FPHLTVAENIAFGLKLRGVPKAEIRA-----RVRELLELVGLEGLLNRYPHELSGGQQQR 138
Query: 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--KTVLYTTH-QLEFLDA 785
+ LARA+ + + D+P SA+DA L ++ L L + T +Y TH Q E L
Sbjct: 139 VALARALAREPSLLLLDEPLSALDAKLREELREE-LKELQRELGITTIYVTHDQEEALAL 197
Query: 786 ADLVLVMKDGKIEQSG 801
AD + VM +G+I Q G
Sbjct: 198 ADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 86.3 bits (215), Expect = 2e-19
Identities = 52/184 (28%), Positives = 86/184 (46%), Gaps = 35/184 (19%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRE 677
+ + KG + G G+GK++L+ ILG + SG IKV GK + ++
Sbjct: 21 LTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGE-IKVLGK------DIKKEPEEVKR 73
Query: 678 NI--LFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735
I L + S YE +L+V + LSGG KQR+ LA+A+
Sbjct: 74 RIGYLPEEP---SLYE------------------NLTV--RENLKLSGGMKQRLALAQAL 110
Query: 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-KTVLYTTHQLEFLDA-ADLVLVMK 793
+ ++ I D+P S +D + F + L L + KT+L ++H LE + D V ++
Sbjct: 111 LHDPELLILDEPTSGLDPES-RREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILN 169
Query: 794 DGKI 797
+G+I
Sbjct: 170 NGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 87.5 bits (217), Expect = 4e-19
Identities = 69/205 (33%), Positives = 110/205 (53%), Gaps = 23/205 (11%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKA-----------YVPQ 666
+++ GS VA+ G GSGKS+LL I G SG I+++G+ A +V Q
Sbjct: 21 LEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGR-IRLNGQDATRVHARDRKIGFVFQ 79
Query: 667 S-SWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN-LSGG 724
+ + T+R+NI FG ++R+ ++ + + +E+ L +G+R N LSGG
Sbjct: 80 HYALFKHLTVRDNIAFGLEIRKHPKAKIKA--RVEELLELV---QLEGLGDRYPNQLSGG 134
Query: 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL---LSQKTVLYTTHQLE 781
Q+QR+ LARA+ V + D+PF A+DA L + L L + TV T Q E
Sbjct: 135 QRQRVALARALAVEPQVLLLDEPFGALDAKVRKEL-RSWLRKLHDEVHVTTVFVTHDQEE 193
Query: 782 FLDAADLVLVMKDGKIEQSGKYEDL 806
++ AD ++VM +GKIEQ G +++
Sbjct: 194 AMEVADRIVVMSNGKIEQIGSPDEV 218
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 87.4 bits (217), Expect = 6e-19
Identities = 71/232 (30%), Positives = 108/232 (46%), Gaps = 55/232 (23%)
Query: 616 DKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-----------KAYV 664
+++ +G + G GSGKS LL +I G I SG I ++GK +YV
Sbjct: 18 VSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGK-ILLNGKDITNLPPEKRDISYV 76
Query: 665 PQS-SWIQTGTIRENILFG----KDMRQSFYEEVLEGCA-------LNQDIEMWADGDLS 712
PQ+ + T+ +NI +G K ++ +VLE LN+ E
Sbjct: 77 PQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPE-------- 128
Query: 713 VVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-- 770
LSGG++QR+ +ARA+ N + + D+PFSA+D T K+ L L +
Sbjct: 129 -------TLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRT-----KEKLREELKKIR 176
Query: 771 ----KTVLYTTHQLEFLDA---ADLVLVMKDGKIEQSGKYEDLIADQNSELV 815
TVL+ TH E +A AD V +M +GK+ Q GK E++ +E V
Sbjct: 177 KEFGVTVLHVTHDFE--EAWALADKVAIMLNGKLIQVGKPEEVFKKPKNEFV 226
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 85.3 bits (212), Expect = 7e-19
Identities = 31/95 (32%), Positives = 56/95 (58%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
+E+EN+ +Y P VL+ ++ + + + ++G +GSGKSTL + + ++ P+ GR+
Sbjct: 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTN 1302
+DG DIS +L + +PQD LF G++ N
Sbjct: 61 LDGADISQWDPNELGDHVGYLPQDDELFSGSIAEN 95
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 91.3 bits (227), Expect = 7e-19
Identities = 64/202 (31%), Positives = 104/202 (51%), Gaps = 20/202 (9%)
Query: 623 GSKVAVCGSVGSGKSSLLSSIL-------GEIPRISGAAIKVHGKK------AYVPQSSW 669
G VA+ G G+GKS++L + G I I G I+ ++ VPQ +
Sbjct: 289 GKTVAIVGESGAGKSTILRLLFRFYDVNSGSI-TIDGQDIRDVTQQSLRRAIGIVPQDTV 347
Query: 670 IQTGTIRENILFGKDMRQSFYEEV---LEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726
+ TI NI +G+ EEV E ++ I+ +G + VGERG+ LSGG+K
Sbjct: 348 LFNDTIAYNIKYGRPDAT--AEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEK 405
Query: 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAA 786
QR+ +AR + N + I D+ SA+D HT + L + + +T L H+L + A
Sbjct: 406 QRVAIARTILKNPPILILDEATSALDTHT-EQAIQAALREVSAGRTTLVIAHRLSTIIDA 464
Query: 787 DLVLVMKDGKIEQSGKYEDLIA 808
D ++V+ +G+I + G +E+L+A
Sbjct: 465 DEIIVLDNGRIVERGTHEELLA 486
|
Length = 497 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 8e-19
Identities = 86/325 (26%), Positives = 156/325 (48%), Gaps = 45/325 (13%)
Query: 510 TLVSVITFGVCILLKTPLTSGAVLS--ALATFRILQEPIYNLPELISMIAQTKVSLYRIQ 567
T+++++ G ++ K L G V++ AT I + L ++++ I Q ++ +++
Sbjct: 253 TMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGR-----LDQVVAFINQVFMAAPKLE 307
Query: 568 EFIKEDNQKKPITEPTSKASDVAIDIE--AGEYAWDAREENFKKPTIK--LTD-KMKIMK 622
EF + ++ + +P AID+ G +D + +F + + D +
Sbjct: 308 EFFEVEDAVPDVRDPPG-----AIDLGRVKGAVEFD--DVSFSYDNSRQGVEDVSFEAKP 360
Query: 623 GSKVAVCGSVGSGKSSLLSSI-------LGEIPRISGAAIKVHGKK------AYVPQSSW 669
G VA+ G G+GKS+L++ + G I I G I+ + A V Q +
Sbjct: 361 GQTVAIVGPTGAGKSTLINLLQRVFDPQSGRI-LIDGTDIRTVTRASLRRNIAVVFQDAG 419
Query: 670 IQTGTIRENILFGK------DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723
+ +I +NI G+ +MR E + IE DG +VVGERG LSG
Sbjct: 420 LFNRSIEDNIRVGRPDATDEEMR-----AAAERAQAHDFIERKPDGYDTVVGERGRQLSG 474
Query: 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFL 783
G++QR+ +ARA+ + + I D+ SA+D T + K L L+ +T H+L +
Sbjct: 475 GERQRLAIARALLKDPPILILDEATSALDVETEAKV-KAALDELMKGRTTFIIAHRLSTV 533
Query: 784 DAADLVLVMKDGKIEQSGKYEDLIA 808
AD +LV +G++ +SG +++L+A
Sbjct: 534 RNADRILVFDNGRVVESGSFDELVA 558
|
Length = 588 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 1e-18
Identities = 55/191 (28%), Positives = 81/191 (42%), Gaps = 55/191 (28%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIP------RISGAAIKVHGKK------AYVPQS 667
I G +A+ G GSGKS+L ILG + R+ GA I Y+PQ
Sbjct: 25 IEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQD 84
Query: 668 SWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727
+ +G+I ENIL SGGQ+Q
Sbjct: 85 DELFSGSIAENIL-----------------------------------------SGGQRQ 103
Query: 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDAA 786
R+ LARA+Y N + + D+P S +D G Q + L + T + H+ E L +A
Sbjct: 104 RLGLARALYGNPRILVLDEPNSHLD-VEGERALNQAIAALKAAGATRIVIAHRPETLASA 162
Query: 787 DLVLVMKDGKI 797
D +LV++DG++
Sbjct: 163 DRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 1e-18
Identities = 93/332 (28%), Positives = 147/332 (44%), Gaps = 36/332 (10%)
Query: 509 PTLVSVITFGVCILLKT--PLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYR- 565
P L S F I L L+ G+ L+ F + L + I + L+
Sbjct: 369 PVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAV-IPLWER 427
Query: 566 ---IQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIM 621
I E + E ++ K T+P + + +D Y D P I L D ++I
Sbjct: 428 AKPILEALPEVDEAK--TDPGKLSGAIEVDRVTFRYRPDG-------PLI-LDDVSLQIE 477
Query: 622 KGSKVAVCGSVGSGKSSLLSSILG-EIPRI-----SGAAIK------VHGKKAYVPQSSW 669
G VA+ G GSGKS+LL +LG E P G + V + V Q+
Sbjct: 478 PGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGR 537
Query: 670 IQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729
+ +G+I ENI G + E L +DI G +V+ E G LSGGQ+QR+
Sbjct: 538 LMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRL 597
Query: 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLV 789
+ARA+ + +FD+ SA+D T + + L L + T + H+L + AD +
Sbjct: 598 LIARALVRKPRILLFDEATSALDNRTQAIV-SESLERL--KVTRIVIAHRLSTIRNADRI 654
Query: 790 LVMKDGKIEQSGKYEDLIADQN--SELV-RQM 818
V+ G++ Q G Y++L+A + ++L RQ+
Sbjct: 655 YVLDAGRVVQQGTYDELMAREGLFAQLARRQL 686
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 1e-18
Identities = 61/216 (28%), Positives = 94/216 (43%), Gaps = 45/216 (20%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-----------AYVPQ 666
+ I G V + G G GKS+LL I G + + I + G+ A V Q
Sbjct: 24 LDIEDGEFVVLLGPSGCGKSTLLRMIAG-LEEPTSGEILIDGRDVTDLPPEKRGIAMVFQ 82
Query: 667 S-SWIQTGTIRENILFGKDMRQSF-------YEEVLEGCALNQDIEMWADGDLSVVGERG 718
+ + T+ ENI FG +R +EV + L + +
Sbjct: 83 NYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNR-----------KP 131
Query: 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHT-------GTHLFKQCLMGLLSQK 771
+ LSGGQ+QR+ LARA+ V++ D+P S +DA L ++
Sbjct: 132 LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHER------LGT 185
Query: 772 TVLYTTH-QLEFLDAADLVLVMKDGKIEQSGKYEDL 806
T +Y TH Q+E + AD ++VM DG+I+Q G +L
Sbjct: 186 TTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLEL 221
|
Length = 338 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 90.5 bits (225), Expect = 2e-18
Identities = 47/147 (31%), Positives = 77/147 (52%), Gaps = 7/147 (4%)
Query: 1174 ISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGK--IELENLLVQYNPTLPMVLKGITCT 1231
+ ERI++ + S P+ GK +EL +L Y P P VL G++
Sbjct: 302 AAAERIVEVLDAAGPVAEG---SAPAAGAVGLGKPTLELRDLSAGY-PGAPPVLDGVSLD 357
Query: 1232 FPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQD 1291
P +++ ++G +GSGKSTL+ L +++P G + +DGV +S + ++R R+S+ QD
Sbjct: 358 LPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQD 417
Query: 1292 PMLFQGTVRTNLD-PLEQHSDQEIWEV 1317
LF TVR NL +D+E+W
Sbjct: 418 AHLFDTTVRENLRLARPDATDEELWAA 444
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 90.7 bits (225), Expect = 2e-18
Identities = 80/316 (25%), Positives = 155/316 (49%), Gaps = 29/316 (9%)
Query: 510 TLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEF 569
+++ ++ G +++K L+ G V++ + +L I L ++ I Q + ++++F
Sbjct: 253 SMMCILVIGTVLVIKGELSVGEVIAFIGFANLL---IGRLDQMSGFITQIFEARAKLEDF 309
Query: 570 IKEDNQKKPITEPTS--KASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVA 627
++ EP + +V +E ++ N + ++ + K G VA
Sbjct: 310 FDLEDSVFQREEPADAPELPNVKGAVEFRHITFEF--ANSSQGVFDVSFEAK--AGQTVA 365
Query: 628 VCGSVGSGKSSLLSSI-------LGEIPRISGAAIKVHGKK------AYVPQSSWIQTGT 674
+ G G+GK++L++ + +G+I I G I ++ A V Q + + +
Sbjct: 366 IVGPTGAGKTTLINLLQRVYDPTVGQI-LIDGIDINTVTRESLRKSIATVFQDAGLFNRS 424
Query: 675 IRENILFGKDMRQSFYEEVLEG---CALNQDIEMWADGDLSVVGERGINLSGGQKQRIQL 731
IRENI G++ + EEV E A + I ++G ++VGERG LSGG++QR+ +
Sbjct: 425 IRENIRLGRE--GATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAI 482
Query: 732 ARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLV 791
ARA+ N+ + + D+ SA+D T + K + L +T H+L + ADLVL
Sbjct: 483 ARAILKNAPILVLDEATSALDVETEARV-KNAIDALRKNRTTFIIAHRLSTVRNADLVLF 541
Query: 792 MKDGKIEQSGKYEDLI 807
+ G++ + G +++LI
Sbjct: 542 LDQGRLIEKGSFQELI 557
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 90.9 bits (226), Expect = 2e-18
Identities = 107/406 (26%), Positives = 182/406 (44%), Gaps = 75/406 (18%)
Query: 448 EAKDARIKATS---ETLKSMRVLKLLSWE----QEFLKKLLRLREIERDSLKKYLYTCSA 500
E ++A KA E L MR ++ + E F + L ++ + +K L A
Sbjct: 331 ELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNK---RKAL----A 383
Query: 501 IAFLFW-----ASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISM 555
A W V V+ +G ++L ++SG ++S L L E + L + S
Sbjct: 384 YAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSG 443
Query: 556 IAQTKVSLYRIQEFIKEDNQKKPITEPTS-----------KASDVAIDIEAGEYAWDARE 604
+ Q + ++ E++ +KP T + DV+ +++ R
Sbjct: 444 MMQAVGASEKVFEYL----DRKPNIPLTGTLAPLNLEGLIEFQDVS-------FSYPNRP 492
Query: 605 ENFKKPTIK-LTDKMKIMKGSKVAVCGSVGSGKSSLLSSIL-------GEIPRISGAAIK 656
+ P +K LT + G VA+ G GSGKS++ + + G++ + G +
Sbjct: 493 D---VPVLKGLT--FTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQV-LLDGVPLV 546
Query: 657 ------VHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVL----EGCALNQDIEMW 706
+H + A V Q + +G++RENI +G + + EE++ A + +E
Sbjct: 547 QYDHHYLHRQVALVGQEPVLFSGSVRENIAYG--LTDTPDEEIMAAAKAANAHDFIMEFP 604
Query: 707 ADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMG 766
D + VGE+G LSGGQKQRI +ARA+ V I D+ SA+DA +Q L
Sbjct: 605 NGYD-TEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAEC-----EQLLQE 658
Query: 767 LLSQK--TVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQ 810
S+ TVL H+L ++ AD +LV+K G + + G ++ L+ DQ
Sbjct: 659 SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQ 704
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 85.2 bits (211), Expect = 3e-18
Identities = 41/98 (41%), Positives = 64/98 (65%), Gaps = 2/98 (2%)
Query: 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1266
+IE + V Y+ +LK I+ F G +VG +G+GKSTLI+ + R+++P+ G I
Sbjct: 3 EIEFKE--VSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSI 60
Query: 1267 LIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLD 1304
LIDGVDI I + DLR ++ ++ Q P LF+GTV+ N++
Sbjct: 61 LIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIE 98
|
Length = 241 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 89.5 bits (223), Expect = 4e-18
Identities = 42/129 (32%), Positives = 63/129 (48%), Gaps = 4/129 (3%)
Query: 1175 SVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPG 1234
S RI + T + P V + + + L N+ Y VLKG++
Sbjct: 310 SARRINEITE---QKPEVTFPTTSTAA-ADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKA 365
Query: 1235 EKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPML 1294
+K+ ++GRTG GKSTL+Q L R +P G IL++G I+ LR +S++ Q L
Sbjct: 366 GEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHL 425
Query: 1295 FQGTVRTNL 1303
F T+R NL
Sbjct: 426 FSATLRDNL 434
|
Length = 574 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 89.0 bits (221), Expect = 5e-18
Identities = 101/399 (25%), Positives = 173/399 (43%), Gaps = 43/399 (10%)
Query: 935 FLSGGSSF---FILGRAVLLATIAIKTAQRLFL----------NMITSVFRAPI----SF 977
F S + V+ +A+ TA R +L ++ +VF I SF
Sbjct: 49 FSKDSSGLLNRYFAFLLVVALVLALGTAARFYLVTWLGERVVADIRRAVFAHLISLSPSF 108
Query: 978 FDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSII---ILMSQAAWQVFPLFL 1034
FD S +++R +TD + + + I + L+ AL L I I+M + ++ L L
Sbjct: 109 FDKNRSGEVVSRLTTDTTLLQSVIG---SSLSMALRNALMCIGGLIMMFITSPKLTSLVL 165
Query: 1035 VILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHS 1094
+ + + + + R+L+R R A + E++ T++ F E+ R
Sbjct: 166 LAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGG 225
Query: 1095 LIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSL-AGLAATYGL 1153
++ T L ++ F ++ +L I + AG +
Sbjct: 226 AVEKAYEAARQRIRTRALL---TAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVF 282
Query: 1154 NLNVLQAWVIWNLCNVENKMI----SVERILQFTNIPSE--APLVIKNSRPSPEWPSSGK 1207
V+ A I L V ++ + ER+++ + AP K + P G+
Sbjct: 283 -YAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPK----TLPVPLRGE 337
Query: 1208 IELENLLVQYNPTLP--MVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGG 1264
IE E + Y P P L G+ T PGE + +VG +G+GKSTL Q L R +P G
Sbjct: 338 IEFEQVNFAY-PARPDQPALDGLNLTVRPGET-VALVGPSGAGKSTLFQLLLRFYDPQSG 395
Query: 1265 RILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNL 1303
RIL+DGVD+ + +LR+R++++PQDP+LF +V N+
Sbjct: 396 RILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENI 434
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 89.4 bits (222), Expect = 6e-18
Identities = 91/387 (23%), Positives = 165/387 (42%), Gaps = 42/387 (10%)
Query: 932 VFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCS 991
V L GGS + + R L R+ ++ S+ R + FFD + + +R S
Sbjct: 216 VSAGLRGGSFNYTMARINL----------RIREDLFRSLLRQDLGFFDENKTGELTSRLS 265
Query: 992 TDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIW----YQAYY 1047
+D T+ + + L L+ LL ++ M + ++ + L+ L + + Y
Sbjct: 266 SDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKRY 325
Query: 1048 ITTARELARMVG--TRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFH 1105
+ EL V + A E+++G T+R F E R +++ +
Sbjct: 326 QLLSEELQEAVAKANQVA------EEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKR 379
Query: 1106 NCGTMEWLCLRINLLFNFAFFLVLII---LVTLPRSAIDPSLAGLAATYGLNLNVLQAWV 1162
++L LVL LV + + ++ L L V
Sbjct: 380 KALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSY 439
Query: 1163 IWNLCNVENKMISV---ERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNP 1219
+++ M +V E++ ++ + PL +P G IE +++ Y P
Sbjct: 440 VYS-----GMMQAVGASEKVFEYLDRKPNIPL---TGTLAPLN-LEGLIEFQDVSFSY-P 489
Query: 1220 TLP--MVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMI 1276
P VLKG+T T PGE + +VG +GSGKST+ L + +P+GG++L+DGV +
Sbjct: 490 NRPDVPVLKGLTFTLHPGEV-VALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQY 548
Query: 1277 GLQDLRSRLSIIPQDPMLFQGTVRTNL 1303
L +++++ Q+P+LF G+VR N+
Sbjct: 549 DHHYLHRQVALVGQEPVLFSGSVRENI 575
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 84.1 bits (209), Expect = 6e-18
Identities = 57/209 (27%), Positives = 100/209 (47%), Gaps = 41/209 (19%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK----------------- 661
+I G VA+ G GSGKS+LL+ +LG + + + + ++GK
Sbjct: 27 EIEAGEFVAIVGPSGSGKSTLLN-LLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKI 85
Query: 662 AYVPQS-SWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVG--ERG 718
+V Q+ + + T+ EN+ + + A+ L V+G +R
Sbjct: 86 GFVFQNFNLLPDLTVLENVELPLLIAGK----------SAGRRKRAAEELLEVLGLEDRL 135
Query: 719 IN-----LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--- 770
+ LSGGQ+QR+ +ARA+ +N + + D+P +D+ T + + L+ L++
Sbjct: 136 LKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLE--LLRELNKERG 193
Query: 771 KTVLYTTHQLEFLDAADLVLVMKDGKIEQ 799
KT++ TH E AD V+ +KDGKIE+
Sbjct: 194 KTIIMVTHDPELAKYADRVIELKDGKIEE 222
|
Length = 226 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 84.6 bits (209), Expect = 8e-18
Identities = 63/232 (27%), Positives = 106/232 (45%), Gaps = 14/232 (6%)
Query: 603 REENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI------- 655
R EN KP +K K I G KV +CG GSGKSSL + + G +
Sbjct: 28 RYENNLKPVLKHV-KAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDIS 86
Query: 656 -----KVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGD 710
+ + + + Q + +G+IR N+ E LE L ++ G
Sbjct: 87 KLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGL 146
Query: 711 LSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ 770
+VV E G N S GQ+Q LARA S + I D+ +++D T ++ ++ +M +
Sbjct: 147 DAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMAT-ENILQKVVMTAFAD 205
Query: 771 KTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHR 822
+TV+ H++ + ADLVLV+ G + + E+L+A ++ ++ +
Sbjct: 206 RTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLVRTDK 257
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 8e-18
Identities = 54/156 (34%), Positives = 82/156 (52%), Gaps = 14/156 (8%)
Query: 1175 SVERILQFTNIPSEAPLVIKNSRPSPEWPSSGK-IELENLLVQYNPTLPMVLKGITCTF- 1232
S R+ +I + P V + P + ++G+ +EL N+ Y LK T
Sbjct: 309 SARRL---NDILDQKPEV---TFPDEQTATTGQALELRNVSFTYPGQQTKALKNFNLTLA 362
Query: 1233 PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDP 1292
GEK + ++GR+GSGKSTL+Q L +P G I ++GV+I+ + Q LR +S++ Q
Sbjct: 363 QGEK-VAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRV 421
Query: 1293 MLFQGTVRTNLDPLEQH-SDQEIWE----VKISKLL 1323
LF GT+R NL SD+E+W V + KLL
Sbjct: 422 HLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLL 457
|
Length = 573 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 88.1 bits (219), Expect = 8e-18
Identities = 72/314 (22%), Positives = 126/314 (40%), Gaps = 52/314 (16%)
Query: 1008 LAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWY-QAYYITTARELARMVGTRKAPIL 1066
A +S +IL+ A + P+F++++G W QA L+R+ G
Sbjct: 137 AAVFPQDWISGLILLLTAP--LIPIFMILIG---WAAQAAARKQWAALSRLSG------- 184
Query: 1067 HHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFF 1126
HF + + G T++ F + ++Y TM LRI L +
Sbjct: 185 -HFLDRLRGLPTLKLFGRAKAQAAAIRRSSEEY------RERTMR--VLRIAFLSSA--- 232
Query: 1127 LVLIILVTLPRSAIDPSLAGLAATYGLNL-----NVLQAWVIWNLC--------NV---- 1169
VL + TL S+A +A G L ++ + L +
Sbjct: 233 -VLELFATL-------SVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGAQY 284
Query: 1170 ENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGIT 1229
+ V + AP + P P+ +E + V Y P L+ ++
Sbjct: 285 HARADGVAAAEALFAVLDAAPRPLAGKAPVTAAPAPS-LEFSGVSVAYPGRRP-ALRPVS 342
Query: 1230 CTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIP 1289
T P +++ +VG +G+GKSTL+ L V+P+ G I ++GV ++ R +++ +P
Sbjct: 343 FTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVP 402
Query: 1290 QDPMLFQGTVRTNL 1303
Q P LF GT+ N+
Sbjct: 403 QHPFLFAGTIAENI 416
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 88.3 bits (219), Expect = 1e-17
Identities = 43/130 (33%), Positives = 71/130 (54%), Gaps = 4/130 (3%)
Query: 1174 ISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFP 1233
I++ER+ N P+E + P G I EN+ +Y P P VL +
Sbjct: 426 IALERLGDILNSPTEPRSAGLAALPE----LRGAITFENIRFRYAPDSPEVLSNLNLDIK 481
Query: 1234 GEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPM 1293
+ IG+VG +GSGKSTL + L R+ P G++L+DGVD+++ LR ++ ++ Q+ +
Sbjct: 482 PGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENV 541
Query: 1294 LFQGTVRTNL 1303
LF ++R N+
Sbjct: 542 LFSRSIRDNI 551
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 1e-17
Identities = 58/185 (31%), Positives = 85/185 (45%), Gaps = 35/185 (18%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIREN 678
I G VA+ G GSGKS+LL I G SG+ I + G+ + +R
Sbjct: 22 NIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGS-ILIDGEDL---TDLEDELPPLRRR 77
Query: 679 ILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSN 738
I G QD ++ L+V+ + LSGGQ+QR+ LARA+ +
Sbjct: 78 I----------------GMVF-QDFALFPH--LTVLENIALGLSGGQQQRVALARALAMD 118
Query: 739 SDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ------KTVLYTTHQLEFLDA-ADLVLV 791
DV + D+P SA+D T ++ + LL TV+ TH L+ AD V+V
Sbjct: 119 PDVLLLDEPTSALDPIT-----RREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVV 173
Query: 792 MKDGK 796
++DGK
Sbjct: 174 LRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 3e-17
Identities = 64/225 (28%), Positives = 98/225 (43%), Gaps = 45/225 (20%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK------AYVPQSSWIQTG 673
+ G VA+ G G+GKS+LL+ I G SG I ++G A P S Q
Sbjct: 22 VPAGEIVAILGPSGAGKSTLLNLIAGFETPASGE-ILINGVDHTASPPAERPVSMLFQEN 80
Query: 674 ------TIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI------NL 721
T+ +NI G + G LN + + + VG G L
Sbjct: 81 NLFAHLTVAQNIGLG----------LSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGEL 130
Query: 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ------KTVLY 775
SGGQ+QR+ LAR + + + D+PFSA+D + ++ L+SQ T+L
Sbjct: 131 SGGQRQRVALARCLVREQPILLLDEPFSALDP-----ALRAEMLALVSQLCDERKMTLLM 185
Query: 776 TTHQLEFLDA---ADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
TH E DA AD V+ + +G+I G ++L++ + S
Sbjct: 186 VTHHPE--DAARIADRVVFLDNGRIAAQGSTQELLSGKASAAALL 228
|
Length = 231 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 86.7 bits (215), Expect = 4e-17
Identities = 101/414 (24%), Positives = 178/414 (42%), Gaps = 56/414 (13%)
Query: 929 LIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILN 988
L ++ L ++ +++L A+ Q+L +++ + R P+S FD+ P ++++
Sbjct: 67 LAAAYVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLIS 126
Query: 989 RCSTDQSTVD----TDIP--YRLAGLAFA-LIQLLSIIILMSQAAWQVFPLFLVILGISI 1041
R + D + T + R A L A L+ + S+ M+ A +FP LV++ I
Sbjct: 127 RVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMIFPAVLVVMVI-- 184
Query: 1042 WYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQE----NRFLLRSHSLID 1097
YQ Y + + R V A I F+E I G + I+ F Q+ R S S
Sbjct: 185 -YQRY----STPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRS--- 236
Query: 1098 DYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNV 1157
H M+ L L LL +IL L L G +A+ + + V
Sbjct: 237 -------HYMARMQTLRLDGFLLRPLLSLFSALILCGLLM------LFGFSASGTIEVGV 283
Query: 1158 LQAWVIWNLCNVENKMISV--------------ERILQFTNIPSEAPLVIKNSRPSPEWP 1203
L A++ + L + +I + ER+ + + P + + RP
Sbjct: 284 LYAFISY-LGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQ--YGNDDRPL---- 336
Query: 1204 SSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG 1263
SG+I+++N+ Y VL+ I + P + +VG TGSGKSTL L +
Sbjct: 337 QSGRIDIDNVSFAYRDDNL-VLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTE 395
Query: 1264 GRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEV 1317
G I +DG +S + LR ++++ QDP++ T N+ S++++W+
Sbjct: 396 GEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQA 449
|
Length = 592 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 5e-17
Identities = 44/273 (16%), Positives = 97/273 (35%), Gaps = 9/273 (3%)
Query: 279 LNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQW 338
L AG + + + + +G S ++L +V + + L +
Sbjct: 6 LLLILAGATALVFPLLLGRFLDSLIDGNGDERSSLISLAILLIAVGVL----QGLLLQGS 61
Query: 339 YFGANRIGIRVRSALTVLIYKRSMAI---KFAGPSSGIIINMINVDVERIGDFFLYIHRI 395
++ R+G R+R L + ++ + + F S G + + + DV +I D +
Sbjct: 62 FYLGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGDKLGL 121
Query: 396 WLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIK 455
+ + + I+ G L +++ + LA + + + +A
Sbjct: 122 FFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKAYAKAGS 181
Query: 456 ATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSA-IAFLFWASPT-LVS 513
E+L +R +K E+ L++ + E + K T S
Sbjct: 182 VAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGITQLISYLSYAL 241
Query: 514 VITFGVCILLKTPLTSGAVLSALATFRILQEPI 546
+ FG +++ L+ G V + L+ L P+
Sbjct: 242 ALWFGAYLVISGGLSVGTVFAFLSLGLQLSGPL 274
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 6e-17
Identities = 64/231 (27%), Positives = 105/231 (45%), Gaps = 47/231 (20%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-------------AYV 664
+ I +G + + G GSGK++ L I I SG I + G+ YV
Sbjct: 22 LTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSG-EILIDGEDISDLDPVELRRKIGYV 80
Query: 665 PQSSWIQTG-----TIRENILF-------GKDMRQSFYEEVLEGCALNQDIEMWADGDLS 712
Q Q G T+ ENI K+ + +E+L+ L D S
Sbjct: 81 IQ----QIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGL----------DPS 126
Query: 713 VVGERGIN-LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ- 770
+R + LSGGQ+QR+ +ARA+ ++ + + D+PF A+D T L Q + L +
Sbjct: 127 EYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQL--QEEIKELQKE 184
Query: 771 --KTVLYTTHQL-EFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQM 818
KT+++ TH + E L AD + VM G+I Q ++++A+ ++ V
Sbjct: 185 LGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPANDFVEDF 235
|
Length = 309 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 84.1 bits (208), Expect = 7e-17
Identities = 72/245 (29%), Positives = 111/245 (45%), Gaps = 55/245 (22%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK------------------ 661
I +G + G GSGKS+LL ++ G P G+ + G
Sbjct: 47 IEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATLRRLRTH 106
Query: 662 --AYVPQS----SWIQTGTIRENILFGKDM-------RQSFYEEVLEGCALNQDIEMWAD 708
+ V Q W T+ EN+ FG +M R+ +E LE L Q WAD
Sbjct: 107 RVSMVFQQFALLPWR---TVEENVAFGLEMQGMPKAERRKRVDEQLELVGLAQ----WAD 159
Query: 709 GDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL 768
GE LSGG +QR+ LARA + + + + D+PFSA+D T L + L+ L
Sbjct: 160 ---RKPGE----LSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDE-LLELQ 211
Query: 769 SQ--KTVLYTTHQL-EFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSL 825
S+ KT+++ +H L E L + + +M+ G+I Q G E+++ + ++ V AH
Sbjct: 212 SKLKKTIVFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYVADFVAH---- 267
Query: 826 DQVNP 830
NP
Sbjct: 268 --TNP 270
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 79.4 bits (197), Expect = 8e-17
Identities = 57/203 (28%), Positives = 83/203 (40%), Gaps = 69/203 (33%)
Query: 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-------------AYVPQSS 668
G V + G G+GKS+LL ++ G + SG I + GK AYVPQ
Sbjct: 24 AGEIVGILGPNGAGKSTLLKTLAGLLKPSSGE-ILLDGKDLASLSPKELARKIAYVPQ-- 80
Query: 669 WIQTGTIRENILFGKDMRQSFYEEVLEGCALNQ-DIEMWADGDLSVVGERGIN-LSGGQK 726
AL + L+ +R N LSGG++
Sbjct: 81 -----------------------------ALELLGLA-----HLA---DRPFNELSGGER 103
Query: 727 QRIQLARAVYSNSDVYIFDDPFSAVD-AHTGTHLFKQCLMGLLSQ------KTVLYTTHQ 779
QR+ LARA+ + + D+P S +D AH + L+ LL + KTV+ H
Sbjct: 104 QRVLLARALAQEPPILLLDEPTSHLDIAH------QIELLELLRRLARERGKTVVMVLHD 157
Query: 780 LEF-LDAADLVLVMKDGKIEQSG 801
L AD V+++KDG+I G
Sbjct: 158 LNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 81.0 bits (200), Expect = 9e-17
Identities = 36/97 (37%), Positives = 61/97 (62%), Gaps = 2/97 (2%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1266
I E++ +Y P P++L I+ PGE +G+VGR+GSGKSTL + + R P GR+
Sbjct: 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEV-VGIVGRSGSGKSTLTKLIQRFYVPENGRV 59
Query: 1267 LIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNL 1303
L+DG D+++ LR ++ ++ Q+ +LF ++R N+
Sbjct: 60 LVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNI 96
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.0 bits (201), Expect = 9e-17
Identities = 63/228 (27%), Positives = 98/228 (42%), Gaps = 44/228 (19%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILG-EIPRISGAAIKVHGKKAYVPQSSWIQTGTIR 676
+ + KG V + G GSGKS+LL + G E +I V G+ +R
Sbjct: 23 LSVEKGEVVVIIGPSGSGKSTLLRCLNGLE--EPDSGSITVDGEDVGDK----KDILKLR 76
Query: 677 ENI--LFGKDMRQSF----YEEVLEGCALNQDIEMWADGD------------LSVVG--E 716
+ +F Q F + VLE L + L VG +
Sbjct: 77 RKVGMVF-----QQFNLFPHLTVLENVTLAP---VKVKKLSKAEAREKALELLEKVGLAD 128
Query: 717 RG----INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-- 770
+ LSGGQ+QR+ +ARA+ + V +FD+P SA+D + +M L++
Sbjct: 129 KADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLD--VMKDLAEEG 186
Query: 771 KTVLYTTHQLEF-LDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
T++ TH++ F + AD V+ M GKI + G E+ + SE RQ
Sbjct: 187 MTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPKSERTRQ 234
|
Length = 240 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 1e-16
Identities = 73/247 (29%), Positives = 117/247 (47%), Gaps = 42/247 (17%)
Query: 601 DAREENFKK--PTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISG----- 652
++EE KK T+ + D + + +G + G GSGKS+LL I I SG
Sbjct: 25 KSKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLID 84
Query: 653 ----------AAIKVHGKK-AYVPQS-SWIQTGTIRENILFG-------KDMRQSFYEEV 693
++ KK + V QS + + T+ EN+ FG + R+ E
Sbjct: 85 GQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEA 144
Query: 694 LEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDA 753
LE L E W E LSGG +QR+ LARA+ + D+ + D+ FSA+D
Sbjct: 145 LELVGL----EGWEH---KYPDE----LSGGMQQRVGLARALAVDPDILLMDEAFSALDP 193
Query: 754 HTGTHLFKQCLMGLLS--QKTVLYTTHQL-EFLDAADLVLVMKDGKIEQSGKYEDLIADQ 810
+ + L+ L + QKT+++ TH L E L D + +MKDG++ Q G E+++ +
Sbjct: 194 LIRREMQDE-LLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNP 252
Query: 811 NSELVRQ 817
++ VR+
Sbjct: 253 ANDYVRE 259
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 1e-16
Identities = 57/208 (27%), Positives = 96/208 (46%), Gaps = 43/208 (20%)
Query: 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------KKAYVP--------- 665
+ G+ G+GKS+LL I G + + G I ++G KK +P
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAG-LEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLV 80
Query: 666 --QSSWIQTGTIRENILFG------KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGER 717
Q + +REN+ FG ++ R S +E+L+ L+ + R
Sbjct: 81 FQQYALFPHLNVRENLAFGLKRKRNREDRISV-DELLDLLGLDH------------LLNR 127
Query: 718 GI-NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVL 774
LSGG+KQR+ LARA+ + ++ + D+PFSA+D L + L + V+
Sbjct: 128 YPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPE-LKQIKKNLNIPVI 186
Query: 775 YTTHQLEFLDA-ADLVLVMKDGKIEQSG 801
+ TH L + AD ++VM+DG+++ G
Sbjct: 187 FVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 80.5 bits (199), Expect = 1e-16
Identities = 68/219 (31%), Positives = 98/219 (44%), Gaps = 33/219 (15%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKA-----------YVPQS- 667
I G VA+ G GSGK++LL I G + R I G+ A +V Q
Sbjct: 25 IPSGELVALLGPSGSGKTTLLRLIAG-LERPDSGTILFGGEDATDVPVQERNVGFVFQHY 83
Query: 668 SWIQTGTIRENILFGKDMRQSFY--------EEVLEGCALNQDIEMWADGDLSVVGERGI 719
+ + T+ +N+ FG ++ +V E L Q L + +R
Sbjct: 84 ALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQ---------LDWLADRYP 134
Query: 720 N-LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHL--FKQCLMGLLSQKTVLYT 776
LSGGQ+QR+ LARA+ V + D+PF A+DA L + + L L TV T
Sbjct: 135 AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVT 194
Query: 777 THQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELV 815
Q E L+ AD V+VM G+IEQ G +++ S V
Sbjct: 195 HDQEEALEVADRVVVMNKGRIEQVGTPDEVYDHPASPFV 233
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 79.5 bits (197), Expect = 2e-16
Identities = 58/210 (27%), Positives = 94/210 (44%), Gaps = 46/210 (21%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKA--------------- 662
+ I KG VA+ G GSGKS+LL+ ILG + R + ++V G
Sbjct: 25 LSIEKGEFVAIVGPSGSGKSTLLN-ILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRH 83
Query: 663 --YVPQS-SWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719
+V QS + + T EN+ + +E A+ L VG
Sbjct: 84 IGFVFQSFNLLPDLTALENVELPLLLAGVPKKE----------RRERAEELLERVGLGDR 133
Query: 720 ------NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--- 770
LSGGQ+QR+ +ARA+ ++ + + D+P +D+ TG + +M LL +
Sbjct: 134 LNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETG-----KEVMELLRELNK 188
Query: 771 ---KTVLYTTHQLEFLDAADLVLVMKDGKI 797
T++ TH E + AD ++ ++DGKI
Sbjct: 189 EAGTTIVVVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 79.5 bits (197), Expect = 3e-16
Identities = 63/226 (27%), Positives = 100/226 (44%), Gaps = 38/226 (16%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK---------------- 661
+ + +G +A+ G GSGKS+LL I+G + SG + + G+
Sbjct: 21 LDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGE-VLIDGEDISGLSEAELYRLRRRM 79
Query: 662 AYVPQSSWIQTG-TIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI- 719
+ QS + T+ EN+ F EE + L + L VG RG
Sbjct: 80 GMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEK---------LEAVGLRGAE 130
Query: 720 -----NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL--LSQKT 772
LSGG K+R+ LARA+ + ++ ++D+P + +D + + + L T
Sbjct: 131 DLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIA-SGVIDDLIRSLKKELGLT 189
Query: 773 VLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
+ TH L+ A AD + V+ DGKI G E+L A + LVRQ
Sbjct: 190 SIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRASDD-PLVRQ 234
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 5e-16
Identities = 77/282 (27%), Positives = 128/282 (45%), Gaps = 23/282 (8%)
Query: 542 LQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWD 601
L EP+ L SM+ Q V+ R+ E + D ++ IDI+ +A+
Sbjct: 294 LNEPLIELTTQQSMLQQAVVAGERVFELM--DGPRQQYGNDDRPLQSGRIDIDNVSFAY- 350
Query: 602 AREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK 661
R++N I L+ + VA+ G GSGKS+L S ++G P G I++ G+
Sbjct: 351 -RDDNLVLQNINLS----VPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGE-IRLDGRP 404
Query: 662 -------------AYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWAD 708
A V Q + T N+ G+D+ + + LE L + D
Sbjct: 405 LSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPD 464
Query: 709 GDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL 768
G + +GE+G NLS GQKQ + LAR + + I D+ + +D+ T +Q L +
Sbjct: 465 GLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGT-EQAIQQALAAVR 523
Query: 769 SQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQ 810
T++ H+L + AD +LV+ G+ + G ++ L+A Q
Sbjct: 524 EHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQ 565
|
Length = 592 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 5e-16
Identities = 65/208 (31%), Positives = 103/208 (49%), Gaps = 17/208 (8%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-------------AYV 664
KI G VA+ G GSGKS++ +++L I I + G A V
Sbjct: 364 FKIPAGKTVALVGRSGSGKSTI-ANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALV 422
Query: 665 PQSSWIQTGTIRENILFGKDMRQSFYE-EVLEGCALNQD-IEMWADGDLSVVGERGINLS 722
Q+ + TI NI + + + S + E A D I +G +V+GE G+ LS
Sbjct: 423 SQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLS 482
Query: 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEF 782
GGQ+QRI +ARA+ +S + I D+ SA+D + + L L +T L H+L
Sbjct: 483 GGQRQRIAIARALLRDSPILILDEATSALDTES-ERAIQAALDELQKNRTSLVIAHRLST 541
Query: 783 LDAADLVLVMKDGKIEQSGKYEDLIADQ 810
++ AD +LV++DG+I + G + +L+A
Sbjct: 542 IEKADEILVVEDGEIVERGTHAELLAQN 569
|
Length = 582 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 6e-16
Identities = 59/203 (29%), Positives = 93/203 (45%), Gaps = 29/203 (14%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-----------AYVPQ 666
+ I G V + G G GK++ L I G + + I + G+ A V Q
Sbjct: 21 LDIADGEFVVLLGPSGCGKTTTLRMIAG-LEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQ 79
Query: 667 S-SWIQTGTIRENILFGKDMRQSFYEEVLEG---CALNQDIEMWADGDLSVVGERGINLS 722
+ + T+ +NI FG +R+ +E+ E A IE ++ + LS
Sbjct: 80 NYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIE-------HLLDRKPKQLS 132
Query: 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHL---FKQCLMGLLSQKTVLYTTH- 778
GGQ+QR+ L RA+ V++ D+P S +DA + K+ L T +Y TH
Sbjct: 133 GGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRL--GTTTIYVTHD 190
Query: 779 QLEFLDAADLVLVMKDGKIEQSG 801
Q+E + AD + VM DG+I+Q G
Sbjct: 191 QVEAMTMADRIAVMNDGQIQQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 77.1 bits (191), Expect = 1e-15
Identities = 32/94 (34%), Positives = 54/94 (57%), Gaps = 2/94 (2%)
Query: 1209 ELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILI 1268
EL+NL Y L I+ T + + +VG GSGKSTL++ L ++ P+ G +L+
Sbjct: 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60
Query: 1269 DGVDISMIGLQDLRSRLSIIPQDP--MLFQGTVR 1300
DG D++ + L++LR ++ ++ Q+P F TV
Sbjct: 61 DGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVE 94
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 1e-15
Identities = 36/100 (36%), Positives = 58/100 (58%), Gaps = 3/100 (3%)
Query: 1205 SGKIELENLLVQYNPTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSG 1263
G +E +++ Y+ + V + ++ PG+ + +VG TG+GKSTLI L RV +P
Sbjct: 332 KGAVEFDDVSFSYDNSRQGV-EDVSFEAKPGQT-VAIVGPTGAGKSTLINLLQRVFDPQS 389
Query: 1264 GRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNL 1303
GRILIDG DI + LR ++++ QD LF ++ N+
Sbjct: 390 GRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNI 429
|
Length = 588 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 1e-15
Identities = 59/201 (29%), Positives = 102/201 (50%), Gaps = 20/201 (9%)
Query: 623 GSKVAVCGSVGSGKSS---LLSSIL----GEI-----PRISGAAIKVHGKKAYVPQSSWI 670
G +VA+ G GSGKS+ L++ + GEI PR + A V Q ++
Sbjct: 505 GQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFL 564
Query: 671 QTGTIRENI-LFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729
GT+R+N+ L+ + + + A++ I G + + E G NLSGGQ+QR+
Sbjct: 565 FEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRL 624
Query: 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--TVLYTTHQLEFLDAAD 787
++ARA+ N + I D+ SA+D T ++ + L ++ T + H+L + D
Sbjct: 625 EIARALVRNPSILILDEATSALDPET-----EKIIDDNLRRRGCTCIIVAHRLSTIRDCD 679
Query: 788 LVLVMKDGKIEQSGKYEDLIA 808
++V++ GK+ Q G +E+L A
Sbjct: 680 EIIVLERGKVVQRGTHEELWA 700
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 1e-15
Identities = 63/229 (27%), Positives = 103/229 (44%), Gaps = 45/229 (19%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSI-------LGEIPRISGAAI------KVHGKKAYV 664
++I KG + + G GSGK++ + I GEI I G I ++ K YV
Sbjct: 22 LEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEI-FIDGEDIREQDPVELRRKIGYV 80
Query: 665 PQSSWIQTG-----TIRENIL-------FGKDMRQSFYEEVLEGCALNQDIEMWADGDLS 712
Q Q G T+ ENI + K+ + +E+L L
Sbjct: 81 IQ----QIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGL---------DPAE 127
Query: 713 VVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-- 770
LSGGQ+QR+ +ARA+ ++ + + D+PF A+D T L Q L Q
Sbjct: 128 FADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQL--QEEFKRLQQEL 185
Query: 771 -KTVLYTTHQL-EFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
KT+++ TH + E AD + +MK+G+I Q G ++++ ++ V +
Sbjct: 186 GKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSPANDFVAE 234
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 74.8 bits (185), Expect = 2e-15
Identities = 45/184 (24%), Positives = 80/184 (43%), Gaps = 48/184 (26%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRE 677
+ + +G A+ G G+GKS+L+ + G SG I V GK+ + + R+
Sbjct: 21 LSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGE-ILVDGKE--------VSFASPRD 71
Query: 678 NILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI-NLSGGQKQRIQLARAVY 736
A I M + LS G++Q +++ARA+
Sbjct: 72 --------------------ARRAGIAM-------------VYQLSVGERQMVEIARALA 98
Query: 737 SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--KTVLYTTHQL-EFLDAADLVLVMK 793
N+ + I D+P +A+ LFK ++ L V++ +H+L E + AD V V++
Sbjct: 99 RNARLLILDEPTAALTPAEVERLFK--VIRRLRAQGVAVIFISHRLDEVFEIADRVTVLR 156
Query: 794 DGKI 797
DG++
Sbjct: 157 DGRV 160
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 2e-15
Identities = 71/223 (31%), Positives = 102/223 (45%), Gaps = 34/223 (15%)
Query: 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILG-EIP-----RISGAAIKVHGKKA-------Y 663
+ I G VA+ G G+GKS+LL I G E P R++G + A +
Sbjct: 22 SLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGF 81
Query: 664 VPQS-SWIQTGTIRENILFGKDMRQSFYEE------VLEGCALNQDIEMWADGDLSVVGE 716
V Q + T+ +NI FG +R+ E V E L Q L + +
Sbjct: 82 VFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQ---------LEGLAD 132
Query: 717 RGIN-LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTV 773
R LSGGQ+QR+ LARA+ V + D+PF A+DA L + L L T
Sbjct: 133 RYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRW-LRKLHDRLGVTT 191
Query: 774 LYTTH-QLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELV 815
++ TH Q E L+ AD V+V+ G+IEQ G +++ S V
Sbjct: 192 VFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPASRFV 234
|
Length = 345 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 2e-15
Identities = 65/197 (32%), Positives = 92/197 (46%), Gaps = 38/197 (19%)
Query: 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKA----------YVPQSSWIQ 671
G +A+ G G+GK++L + G I SG+ I ++GK YV Q Q
Sbjct: 25 AGEIIALTGKNGAGKTTLAKILAGLIKESSGS-ILLNGKPIKAKERRKSIGYVMQDVDYQ 83
Query: 672 TGTIRENILFGKDMRQSFYEEVLEGC----ALNQDIE-MWADGDLSVVGERG-INLSGGQ 725
LF S EE+L G A N+ E + D DL + ER ++LSGGQ
Sbjct: 84 --------LFTD----SVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQ 131
Query: 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTG---THLFKQC-LMGLLSQKTVLYTTHQLE 781
KQR+ +A A+ S D+ IFD+P S +D L ++ G K V+ TH E
Sbjct: 132 KQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQG----KAVIVITHDYE 187
Query: 782 FL-DAADLVLVMKDGKI 797
FL D VL++ +G I
Sbjct: 188 FLAKVCDRVLLLANGAI 204
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 3e-15
Identities = 32/94 (34%), Positives = 55/94 (58%), Gaps = 3/94 (3%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
+E+ENL Y +L ++ + P + G++G GSGKSTL++ L +++P G +L
Sbjct: 3 LEVENLSFGYGGKP--ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVL 60
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLFQG-TVR 1300
+DG DI+ + ++L +L+ +PQ P G TV
Sbjct: 61 LDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVY 94
|
Length = 258 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 3e-15
Identities = 36/96 (37%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
+ + N+ Y VLK ++ +KI ++GR+GSGKSTL+Q L ++P G I
Sbjct: 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNL 1303
+DGV +S + L S +S++ Q P LF T+R NL
Sbjct: 61 LDGVPVSDLEKA-LSSLISVLNQRPYLFDTTLRNNL 95
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 75.6 bits (187), Expect = 3e-15
Identities = 59/216 (27%), Positives = 88/216 (40%), Gaps = 59/216 (27%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRE 677
+ + KG V + G GSGKS+LL I + I + G K + + + +R+
Sbjct: 21 LTVKKGEVVVIIGPSGSGKSTLLRCINL-LEEPDSGTIIIDGLKLTDDKKNINE---LRQ 76
Query: 678 NI--LFGKDMRQSF----YEEVLEGCALNQ---------DIEMWADGDLSVVG------E 716
+ +F Q F + VLE L + E A L VG
Sbjct: 77 KVGMVF-----QQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADA 131
Query: 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVD--------------AHTGTHLFKQ 762
LSGGQ+QR+ +ARA+ N V +FD+P SA+D A G
Sbjct: 132 YPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGM----- 186
Query: 763 CLMGLLSQKTVLYTTHQLEF-LDAADLVLVMKDGKI 797
T++ TH++ F + AD V+ M DG+I
Sbjct: 187 ---------TMVVVTHEMGFAREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 4e-15
Identities = 41/138 (29%), Positives = 71/138 (51%), Gaps = 6/138 (4%)
Query: 1169 VENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGI 1228
+E + ++ +L+ P + P SG +EL N+ Y+P P +++
Sbjct: 439 LEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENF 498
Query: 1229 TCTFPGEKKIGVVGRTGSGKST---LIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1285
+ T +++ +VG +GSGKST L+ L++ P G IL DG+ I + L + +
Sbjct: 499 SLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ---PWSGEILFDGIPREEIPREVLANSV 555
Query: 1286 SIIPQDPMLFQGTVRTNL 1303
+++ QD LF+GTVR NL
Sbjct: 556 AMVDQDIFLFEGTVRDNL 573
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 75.2 bits (186), Expect = 6e-15
Identities = 62/212 (29%), Positives = 94/212 (44%), Gaps = 41/212 (19%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILG--------------EIPRISGAAIKVHGKK-AYV 664
I KG + + G GSGKS+L +ILG ++ ++S K+ K+ V
Sbjct: 28 IKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMV 87
Query: 665 PQ---SSWIQTGTIRENI-----LFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGE 716
Q SS TI E I + GK ++ +E + L + + V+
Sbjct: 88 FQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAV--LLLLVGVGL----PEEVLNR 141
Query: 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL------SQ 770
LSGGQ+QR+ +ARA+ N + I D+P SA+D + ++ LL
Sbjct: 142 YPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSV-----QAQILDLLKKLQEELG 196
Query: 771 KTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801
T+L+ TH L + AD V VM GKI + G
Sbjct: 197 LTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 1e-14
Identities = 36/130 (27%), Positives = 53/130 (40%), Gaps = 28/130 (21%)
Query: 637 SSLLSSILGEIPRISGAAIKVHGKK--------------AYVPQSSWI-QTGTIRENILF 681
S+LL I G + SG I + G+ V Q + T+REN+ F
Sbjct: 1 STLLKLITGLLQPTSGT-ILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFF 59
Query: 682 G--KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNS 739
G + EE LE L ++ E LSGGQKQR+ +ARA+
Sbjct: 60 GLRDKEADARAEEALERVGLPDFLD----------REPVGTLSGGQKQRVAIARALLKKP 109
Query: 740 DVYIFDDPFS 749
+ + D+P +
Sbjct: 110 KLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 74.1 bits (183), Expect = 1e-14
Identities = 48/197 (24%), Positives = 91/197 (46%), Gaps = 34/197 (17%)
Query: 622 KGSKVAVCGSVGSGKSSLLSSILGEIP------RISGAAIKVHGKKA-----YVPQSSWI 670
KG + G G+GK++ L + GE+ I+G +I+ K A Y PQ +
Sbjct: 27 KGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDAL 86
Query: 671 QTG-TIRENILF--------GKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721
T+RE++ F ++++ E +L L A+ +R L
Sbjct: 87 FDELTVREHLRFYARLKGLPKSEIKEEV-ELLLRVLGLTD----KAN-------KRARTL 134
Query: 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLE 781
SGG K+++ LA A+ V + D+P S +D + ++ ++ + ++++ TTH ++
Sbjct: 135 SGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWD-LILEVRKGRSIILTTHSMD 193
Query: 782 FLDA-ADLVLVMKDGKI 797
+A D + +M DGK+
Sbjct: 194 EAEALCDRIAIMSDGKL 210
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 2e-14
Identities = 32/82 (39%), Positives = 52/82 (63%), Gaps = 2/82 (2%)
Query: 1209 ELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILI 1268
E+ENL +Y L ++ T + + +VG GSGKSTL++A+ +++P+ G ILI
Sbjct: 1 EIENLSFRYGGRT--ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILI 58
Query: 1269 DGVDISMIGLQDLRSRLSIIPQ 1290
DG DI+ + L++LR R+ +PQ
Sbjct: 59 DGKDIAKLPLEELRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 2e-14
Identities = 64/305 (20%), Positives = 128/305 (41%), Gaps = 32/305 (10%)
Query: 1015 LLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIA 1074
L+ I ++ F + +++ Y + T R+ + ++S A
Sbjct: 67 LVEISLVAVILWRVYGWWFALTTLVTVI--LYLLFTVIVSDWRTDFRRLM---NNADSDA 121
Query: 1075 GA---------TTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAF 1125
A T++ F E +R ++ Y ++ L +F+
Sbjct: 122 NAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLVLNFGQTAIFSTG- 180
Query: 1126 FLVLIILVTLPRSAID------PSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERI 1179
L +++T+ ++ L L++ ++ ++ + + +E++
Sbjct: 181 ---LRVMMTMSALGVEEGQLTVGDLV-NVNALLFQLSIPLNFLGFSYREIRQALTDMEKM 236
Query: 1180 LQFTNIPSEAPLVIKNSRPSPE-WP-SSGKIELENLLVQYNPTLPMVLKGITCTFPGEKK 1237
++ +E + ++ +P WP G + N+ Y+P P +L GI+ T P K
Sbjct: 237 FDLLDVEAE----VSDAPDAPPLWPVRLGAVAFINVSFAYDPRRP-ILNGISFTIPLGKT 291
Query: 1238 IGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQG 1297
+ +VG +G+GKST+++ LFR + + G I IDG DI + Q LR + I+PQD +LF
Sbjct: 292 VAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFND 351
Query: 1298 TVRTN 1302
T+ N
Sbjct: 352 TIAYN 356
|
Length = 497 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 2e-14
Identities = 37/99 (37%), Positives = 59/99 (59%), Gaps = 7/99 (7%)
Query: 1208 IELENLLVQYNPTLPM---VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGG 1264
I++ENL Y P L + + +G++G TGSGKSTLIQ L +++P+ G
Sbjct: 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSG 62
Query: 1265 RILIDGVDIS--MIGLQDLRSRLSIIPQDP--MLFQGTV 1299
+I+IDGVDI+ + L D+R ++ ++ Q P LF+ T+
Sbjct: 63 KIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETI 101
|
Length = 287 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 74.5 bits (184), Expect = 2e-14
Identities = 55/208 (26%), Positives = 93/208 (44%), Gaps = 36/208 (17%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA----IKVHGKKAYVPQSSWIQTGT 674
I G VA+ G G+GKS+LL + G + SG+ ++ K + Q G
Sbjct: 23 SINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGM 82
Query: 675 I--------R----ENILFGKDMRQSFY---------EEVLEGCALNQDIEMWADGDLSV 713
I R EN+L G+ R+S + EE A + + + L
Sbjct: 83 IFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGL-----LDK 137
Query: 714 VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVD---AHTGTHLFKQCLMGLLSQ 770
+R LSGGQ+QR+ +ARA+ + + D+P +++D + L K+
Sbjct: 138 AYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREE--G 195
Query: 771 KTVLYTTHQLEF-LDAADLVLVMKDGKI 797
TV+ + HQ++ + AD ++ +KDG+I
Sbjct: 196 ITVIVSLHQVDLAREYADRIVGLKDGRI 223
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 2e-14
Identities = 58/205 (28%), Positives = 92/205 (44%), Gaps = 31/205 (15%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYV------PQSSWIQ 671
+ + G VA+ G G+GKS+LL+ I G I SG+ IKV+ + P S Q
Sbjct: 19 LNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGS-IKVNDQSHTGLAPYQRPVSMLFQ 77
Query: 672 TG------TIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN-LSGG 724
T+R+NI G + + + + D +R LSGG
Sbjct: 78 ENNLFAHLTVRQNIGLG--LHPGLKLNAEQQEKVVDAAQQVGIADYL---DRLPEQLSGG 132
Query: 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS------QKTVLYTTH 778
Q+QR+ LAR + + + + D+PFSA+D L ++ ++ L+ Q+T+L TH
Sbjct: 133 QRQRVALARCLVRPNPILLLDEPFSALDP-----LLREEMLALVKQLCSERQRTLLMVTH 187
Query: 779 QLEFLDA-ADLVLVMKDGKIEQSGK 802
L A A + V+ GKI+
Sbjct: 188 HLSDARAIASQIAVVSQGKIKVVSD 212
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 3e-14
Identities = 65/244 (26%), Positives = 117/244 (47%), Gaps = 18/244 (7%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSIL------GEIPRISGAAIKV----HGKKAY--VPQS 667
I G +V + G GSGKS+LLS+ L G+I +I G + +KA+ +PQ
Sbjct: 27 ISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDI-QIDGVSWNSVPLQKWRKAFGVIPQK 85
Query: 668 SWIQTGTIRENI-LFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726
+I +GT R+N+ +GK + ++ V E L IE + V+ + G LS G K
Sbjct: 86 VFIFSGTFRKNLDPYGKWSDEEIWK-VAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHK 144
Query: 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAA 786
Q + LAR+V S + + + D+P + +D T + ++ L + TV+ + H++E +
Sbjct: 145 QLMCLARSVLSKAKILLLDEPSAHLDPIT-YQVIRKTLKQAFADCTVILSEHRIEAMLEC 203
Query: 787 DLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMSQ 846
LV+++ K+ Q + L+ +++ +Q + L K + Q+
Sbjct: 204 QRFLVIEENKVRQYDSIQKLLNEKS--HFKQAISPSDRLKLFPRRNSSKSKRKPRPQIQA 261
Query: 847 ITEE 850
+ EE
Sbjct: 262 LQEE 265
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 3e-14
Identities = 57/223 (25%), Positives = 100/223 (44%), Gaps = 34/223 (15%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI-------KVHGKK--------AYV 664
I +G VA+ G G+GKS+LL S+ G + SG + K+ GK+ +
Sbjct: 27 INQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMI 86
Query: 665 PQS-SWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWAD-----GDLSVVGERG 718
Q + + ++ EN+L G+ S + + G +D D G L +R
Sbjct: 87 FQQFNLVPRLSVLENVLLGRLGYTSTWRSLF-GLFSKEDKAQALDALERVGILDKAYQRA 145
Query: 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL------SQKT 772
LSGGQ+QR+ +ARA+ + + D+P +++D + +M +L T
Sbjct: 146 STLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKK-----VMDILKDINQEDGIT 200
Query: 773 VLYTTHQLEF-LDAADLVLVMKDGKIEQSGKYEDLIADQNSEL 814
V+ HQ++ AD ++ +K G+I G +L + E+
Sbjct: 201 VIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELTDEALDEI 243
|
Length = 258 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 3e-14
Identities = 67/226 (29%), Positives = 107/226 (47%), Gaps = 33/226 (14%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSI-LGEIP---RISGAAIKVHGKKAYVPQSSWIQTG 673
+++ G VA+ G GSGK++LL I L E P I I + ++ Q I+
Sbjct: 24 LEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQ- 82
Query: 674 TIRENILFGKDMRQSF--------YEEVLEGCAL-----NQDIEMWADGDLSVVGERGIN 720
+R+++ F + Q+F E ++EG + ++ A L+ VG G
Sbjct: 83 -LRQHVGF---VFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKE 138
Query: 721 ------LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAH-TGTHLFKQCLMGLLSQK-T 772
LSGGQ+QR+ +ARA+ +V +FD+P SA+D G L + L +K T
Sbjct: 139 TSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVL--NTIRQLAQEKRT 196
Query: 773 VLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
++ TH++ F D AD + M G+I + G + L AD RQ
Sbjct: 197 MVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFADPQQPRTRQ 242
|
Length = 250 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 72.9 bits (179), Expect = 4e-14
Identities = 40/115 (34%), Positives = 70/115 (60%), Gaps = 6/115 (5%)
Query: 1206 GKIELENLLVQYNPTLP--MVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPS 1262
G ++ +N+ Y PT P +VL+ ++ T PGE +VG +GSGKST++ L +P
Sbjct: 10 GIVKFQNVTFAY-PTRPDTLVLQDVSFTLHPGEVT-ALVGPSGSGKSTVVALLENFYQPQ 67
Query: 1263 GGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLD-PLEQHSDQEIWE 1316
GG++L+DG IS + L S++S++ Q+P+LF +++ N+ L+ S + + E
Sbjct: 68 GGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKE 122
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 4e-14
Identities = 66/221 (29%), Positives = 101/221 (45%), Gaps = 47/221 (21%)
Query: 633 GSGKSSLLSSILGEIPRISGAAIKVHGKK-----------------AYVPQS----SWIQ 671
GSGKS+L+ + I G I V GK + V QS
Sbjct: 64 GSGKSTLVRLLNRLIEPTRGE-ILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHR- 121
Query: 672 TGTIRENILFG-------KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724
T+ EN+ FG K R+ E LE L +AD E LSGG
Sbjct: 122 --TVLENVAFGLEVQGVPKAEREERALEALELVGLEG----YAD---KYPNE----LSGG 168
Query: 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQL-E 781
+QR+ LARA+ ++ D+ + D+ FSA+D T + + L+ L + +KT+++ TH L E
Sbjct: 169 MQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDE-LLELQAKLKKTIVFITHDLDE 227
Query: 782 FLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHR 822
L D + +MKDG+I Q G E+++ + ++ VR +
Sbjct: 228 ALRIGDRIAIMKDGEIVQVGTPEEILLNPANDYVRDFVRNV 268
|
Length = 386 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 4e-14
Identities = 59/267 (22%), Positives = 104/267 (38%), Gaps = 31/267 (11%)
Query: 554 SMIAQTKVSLYRIQEFIKEDNQKKPIT----EPTSKASDVAIDIEAGEYAWDAREENFKK 609
S I + + L + + KP+ P + + ++ E +D K
Sbjct: 282 SRIKRLE-KLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGGRLLLKD 340
Query: 610 PTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-AYVPQ-- 666
L+ +I +G ++A+ G G+GKS+LL + GE+ +SG K Y Q
Sbjct: 341 ----LS--FRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHR 394
Query: 667 SSWIQTGTIRENI-LFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725
T+ E + D + L + + LSGG+
Sbjct: 395 DELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGED----------QEKPVGVLSGGE 444
Query: 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLD 784
K R+ LA+ + ++ + D+P + +D + L LL + TVL +H FLD
Sbjct: 445 KARLLLAKLLLQPPNLLLLDEPTNHLDIESLEAL----EEALLDFEGTVLLVSHDRYFLD 500
Query: 785 A-ADLVLVMKDGKIEQSGKYEDLIADQ 810
A + +++D E G YED + +
Sbjct: 501 RVATRIWLVEDKVEEFEGGYEDYLEQK 527
|
Length = 530 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 74.8 bits (184), Expect = 4e-14
Identities = 59/205 (28%), Positives = 91/205 (44%), Gaps = 29/205 (14%)
Query: 630 GSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-AYVP----------QS-SWIQTGTIRE 677
G G GK++LL + G + +I + G+ VP QS + T+ E
Sbjct: 3 GPSGCGKTTLLRLLAGFE-QPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEE 61
Query: 678 NILFGKDMRQSFYEE----VLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733
N+ FG MR+ E VLE L Q E + LSGGQ+QR+ LAR
Sbjct: 62 NVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFAD--------RKPHQLSGGQQQRVALAR 113
Query: 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--KTVLYTTH-QLEFLDAADLVL 790
A+ + + D+P SA+D + L + Q T ++ TH Q E + +D +
Sbjct: 114 ALVFKPKILLLDEPLSALDKKL-RDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIA 172
Query: 791 VMKDGKIEQSGKYEDLIADQNSELV 815
+M+ GKI Q G E++ + + V
Sbjct: 173 IMRKGKIAQIGTPEEIYEEPANLFV 197
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 5e-14
Identities = 36/115 (31%), Positives = 61/115 (53%), Gaps = 7/115 (6%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
IE ENL +Y LK ++ +++ ++G GSGKSTL++ L +++P+ G +L
Sbjct: 4 IEAENLSFRYPGRKA-ALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVL 62
Query: 1268 IDGVDISMI-GLQDLRSRLSIIPQDP--MLFQGTVRTNLD---PLEQHSDQEIWE 1316
+DG+D S L +LR ++ ++ Q+P LF TV + +EI E
Sbjct: 63 VDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEE 117
|
Length = 235 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 72.9 bits (180), Expect = 5e-14
Identities = 44/123 (35%), Positives = 66/123 (53%), Gaps = 10/123 (8%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
IEL L + VLKG+ + + ++G +GSGKSTL++ + ++ P G +L
Sbjct: 1 IELRGLTKSFGGR--TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVL 58
Query: 1268 IDGVDI---SMIGLQDLRSRLSIIPQDPMLFQG-TVRTNLD-PLEQH---SDQEIWEVKI 1319
IDG DI S L LR R+ ++ Q LF TV N+ PL +H S++EI E+ +
Sbjct: 59 IDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVL 118
Query: 1320 SKL 1322
KL
Sbjct: 119 EKL 121
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 7e-14
Identities = 51/147 (34%), Positives = 75/147 (51%), Gaps = 28/147 (19%)
Query: 674 TIRENILFGKDMRQSFYEE----VLEGCALNQDIEMWADGDLSVVGERGI-NLSGGQKQR 728
T+ EN+ FG M+++ E V+E + Q L +R LSGGQ+QR
Sbjct: 102 TVFENVAFGLRMQKTPAAEITPRVMEALRMVQ---------LEEFAQRKPHQLSGGQQQR 152
Query: 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL--LSQK---TVLYTTH-QLEF 782
+ +ARAV + V + D+ SA+D L KQ L L +K T ++ TH Q E
Sbjct: 153 VAIARAVVNKPKVLLLDESLSALDY----KLRKQMQNELKALQRKLGITFVFVTHDQEEA 208
Query: 783 LDAADLVLVMKDGKIEQSGK----YED 805
L +D ++VM+DG+IEQ G YE+
Sbjct: 209 LTMSDRIVVMRDGRIEQDGTPREIYEE 235
|
Length = 375 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 7e-14
Identities = 65/204 (31%), Positives = 93/204 (45%), Gaps = 35/204 (17%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILG-EIPRISGAAIKVHG---------KKAY--VPQS 667
+ KG V + G G GK++LL I G E + I G K+ Y V QS
Sbjct: 27 VKKGEFVCLLGPSGCGKTTLLRIIAGLERQ--TAGTIYQGGRDITRLPPQKRDYGIVFQS 84
Query: 668 -SWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI------N 720
+ T+ +NI +G R EV + + L +VG G
Sbjct: 85 YALFPNLTVADNIAYGLKNRGMGRAEV------AERVAEL----LDLVGLPGSERKYPGQ 134
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL---LSQKTVLYTT 777
LSGGQ+QR+ LARA+ ++ + + D+P SA+DA HL + + L L T++ T
Sbjct: 135 LSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHL-RTEIRQLQRRLGVTTIMVTH 193
Query: 778 HQLEFLDAADLVLVMKDGKIEQSG 801
Q E L AD ++VM G IEQ G
Sbjct: 194 DQEEALSMADRIVVMNHGVIEQVG 217
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 8e-14
Identities = 66/233 (28%), Positives = 111/233 (47%), Gaps = 50/233 (21%)
Query: 622 KGSKVAVCGSVGSGKSSLLSSI-LGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENIL 680
G +++ GS GSGKS+ L I E P S +I+V+G++ I+ ++ L
Sbjct: 31 AGDVISIIGSSGSGKSTFLRCINFLEKP--SAGSIRVNGEE--------IRLKRDKDGQL 80
Query: 681 FGKDMRQ---------------------SFYEEVLE------GCALNQDIEMWADGDLSV 713
D RQ + E V+E G + + IE A+ L+
Sbjct: 81 KPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIER-AEKYLAK 139
Query: 714 VG--ERG----INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL 767
VG E+ +LSGGQ+QR+ +ARA+ +V +FD+P SA+D + K +M
Sbjct: 140 VGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLK--VMQD 197
Query: 768 LSQ--KTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
L++ +T++ TH++ F D + V+ + GKIE+ G E + + S ++Q
Sbjct: 198 LAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVFGNPQSPRLKQ 250
|
Length = 256 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.6 bits (187), Expect = 8e-14
Identities = 63/231 (27%), Positives = 106/231 (45%), Gaps = 47/231 (20%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK--------------AY 663
+ + G A+ G G+GKS+L+ + G P SG I + GK A
Sbjct: 29 LTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGE-ILIDGKPVAFSSPRDALAAGIAT 87
Query: 664 VPQ-SSWIQTGTIRENILFG------------KDMRQSFYEEVLEGCALNQDIEMWADGD 710
V Q S + ++ ENI G K MR+ E+L L+ D +
Sbjct: 88 VHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRR-ARELLARLGLDIDPD------ 140
Query: 711 LSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ 770
++VG +LS Q+Q +++ARA+ ++ V I D+P +A+ LF + L +Q
Sbjct: 141 -TLVG----DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDL-IRRLKAQ 194
Query: 771 -KTVLYTTHQL-EFLDAADLVLVMKDGKIEQSGKYEDLIADQN-SELVRQM 818
++Y +H+L E + AD + V++DG++ + A+ + ELVR M
Sbjct: 195 GVAIIYISHRLDEVFEIADRITVLRDGRVVGTR---PTAAETSEDELVRLM 242
|
Length = 500 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 9e-14
Identities = 61/226 (26%), Positives = 101/226 (44%), Gaps = 37/226 (16%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSS-------------ILGE-IPRISGAAIKVHGKK-- 661
+ I KG + G GSGKS+ + I GE I + S ++ +K
Sbjct: 14 LAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKI 73
Query: 662 AYVPQS-SWIQTGTIRENILFGKDM----RQSFYEEVLEGCALNQ-DIEMWADGDLSVVG 715
V Q + TI +N G ++ Q E+ LE L +E +
Sbjct: 74 GMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALE--LLKLVGLEEYEH------- 124
Query: 716 ERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHL---FKQCLMGLLSQKT 772
LSGG +QR+ LARA+ + D+ + D+ FSA+D + K+ L QKT
Sbjct: 125 RYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATL--QKT 182
Query: 773 VLYTTHQL-EFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
+++ TH L E + D +++MK G+I Q G ++++ + +E V +
Sbjct: 183 IVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYVEE 228
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 70.2 bits (173), Expect = 1e-13
Identities = 28/82 (34%), Positives = 52/82 (63%), Gaps = 2/82 (2%)
Query: 1209 ELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILI 1268
E+ENL V Y VL ++ + + +G++G G+GKSTL++ L +++PS G IL+
Sbjct: 1 EVENLSVGYGGR--TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILL 58
Query: 1269 DGVDISMIGLQDLRSRLSIIPQ 1290
DG D++ + ++L +++ +PQ
Sbjct: 59 DGKDLASLSPKELARKIAYVPQ 80
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 1e-13
Identities = 56/209 (26%), Positives = 100/209 (47%), Gaps = 42/209 (20%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAY-VPQSSWIQ----T 672
++I G V + G GSGK++LL+ I G + + ++KV G++ Y + +Q
Sbjct: 26 LEINPGEIVILTGPSGSGKTTLLTLI-GGLRSVQEGSLKVLGQELYGASEKELVQLRRNI 84
Query: 673 G------------TIRENILFGKDMRQSFY--------EEVLEGCALNQDIEMWADGDLS 712
G T R+N+ +++ + +LE L ++ +
Sbjct: 85 GYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPH---- 140
Query: 713 VVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK- 771
NLSGGQKQR+ +ARA+ + + D+P +A+D+ +G + + LM L+++
Sbjct: 141 -------NLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVE--LMQKLAREQ 191
Query: 772 --TVLYTTHQLEFLDAADLVLVMKDGKIE 798
T+L TH LD AD ++ M+DGK+
Sbjct: 192 GCTILIVTHDNRILDVADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 69.7 bits (172), Expect = 2e-13
Identities = 31/98 (31%), Positives = 55/98 (56%), Gaps = 4/98 (4%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
IE+ NL +Y L I+ T + G++G G+GK+TLI+ + +++P G I
Sbjct: 1 IEVRNLSKRYGKK--TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIK 58
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLFQG-TVRTNLD 1304
+ G DI ++++ R+ +P++P L++ TVR NL
Sbjct: 59 VLGKDIK-KEPEEVKRRIGYLPEEPSLYENLTVRENLK 95
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 2e-13
Identities = 61/229 (26%), Positives = 95/229 (41%), Gaps = 35/229 (15%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAY--------VPQSSW 669
+ G KVA+ G GSGKS++L IL + I I+V G++ Y + +
Sbjct: 21 FSVAAGEKVALIGPSGSGKSTILR-ILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADE 79
Query: 670 IQTGTIRENI-----LFGKDMRQSFYEEVLEGCALNQDI-----EMWADGDLSVVG---- 715
+R I F ++ + V E L + E A L +VG
Sbjct: 80 KHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADK 139
Query: 716 --ERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCL-----MGLL 768
LSGGQ+QR+ +ARA+ V +FD+ SA+D L + L +
Sbjct: 140 ADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDP----ELVGEVLNVIRRLASE 195
Query: 769 SQKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDLIADQNSELVR 816
T+L TH++ F + AD V G+I + GK +++ E R
Sbjct: 196 HDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFRQPKEERTR 244
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 3e-13
Identities = 51/196 (26%), Positives = 90/196 (45%), Gaps = 33/196 (16%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-------------AYVP 665
K+ G K+ + G G+GKS+L+ ++ + G I++ G +P
Sbjct: 30 KVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGK-IEIDGIDISTIPLEDLRSSLTIIP 88
Query: 666 QSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725
Q + +GTIR N+ D + +E + G AL V E G+NLS GQ
Sbjct: 89 QDPTLFSGTIRSNL----DPFDEYSDEEIYG-ALR-------------VSEGGLNLSQGQ 130
Query: 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA 785
+Q + LARA+ V + D+ +++D T L ++ + + T+L H+L +
Sbjct: 131 RQLLCLARALLKRPRVLVLDEATASIDYAT-DALIQKTIREEFTNSTILTIAHRLRTIID 189
Query: 786 ADLVLVMKDGKIEQSG 801
D +LVM G++++
Sbjct: 190 YDKILVMDAGEVKEYD 205
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 3e-13
Identities = 59/233 (25%), Positives = 98/233 (42%), Gaps = 62/233 (26%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILG---EIPRISGAAIKVHGKK--------------- 661
+ G + + G GSGKS+L +++G E RI+ + + G+
Sbjct: 32 VEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGK 91
Query: 662 --AYVPQ---SSWIQTGTIRENI-----LFGKDMRQSFYEEVLEGCALNQDIEMWADGDL 711
A + Q +S TI + I L GK R + +E L
Sbjct: 92 RIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVEL--------------L 137
Query: 712 SVVG----ERGIN----LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQC 763
VG ER LSGG +QR+ +A A+ + I D+P +A+D T +
Sbjct: 138 EQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTT-----QAQ 192
Query: 764 LMGLLSQ------KTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDLIAD 809
++ LL VL+ TH L + + AD V+VM G+I ++G E+++++
Sbjct: 193 ILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSN 245
|
Length = 539 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 4e-13
Identities = 32/98 (32%), Positives = 55/98 (56%), Gaps = 3/98 (3%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
IE+ NL +Y L G++ + G++G G+GK+TL++ L +++P+ G IL
Sbjct: 5 IEVRNLTKKYGGDKT-ALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEIL 63
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLFQG-TVRTNLD 1304
+ G D+ +R R+ +PQ+P L+ TVR NL+
Sbjct: 64 VLGYDVV-KEPAKVRRRIGYVPQEPSLYPELTVRENLE 100
|
Length = 293 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 4e-13
Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 9/103 (8%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE-----PS 1262
IEL +L V Y LK I+ P + ++G +G GKSTL++ L R+ + P
Sbjct: 1 IELRDLNVYYGDK--HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD 58
Query: 1263 GGRILIDGVDISMIGLQD--LRSRLSIIPQDPMLFQGTVRTNL 1303
G +L+DG DI + + LR R+ ++ Q P F G++ N+
Sbjct: 59 EGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNV 101
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 6e-13
Identities = 49/205 (23%), Positives = 87/205 (42%), Gaps = 22/205 (10%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI---KVHGKKAYVPQ--------S 667
++ G A+ G G+GK++LLS + GE P SG + GK + + S
Sbjct: 53 QVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVS 112
Query: 668 SWIQ-----TGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI-NL 721
S + T+R+ +L G Y+E L L + + +R +L
Sbjct: 113 SELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSL 172
Query: 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS---QKTVLYTTH 778
S G+++R+ +ARA+ + ++ I D+P +D L L + +L+ TH
Sbjct: 173 SQGEQRRVLIARALVKDPELLILDEPAQGLDLI-AREQLLNRLEELAASPGAPALLFVTH 231
Query: 779 QL-EFLDAADLVLVMKDGKIEQSGK 802
E L++K+G++ GK
Sbjct: 232 HAEEIPPCFTHRLLLKEGEVVAQGK 256
|
Length = 257 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 6e-13
Identities = 63/206 (30%), Positives = 95/206 (46%), Gaps = 29/206 (14%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILG-EIPRISGAAIKVHGKK-AYVP----------QS 667
I +G + G G GK++LL I G E P + I + GK +P Q+
Sbjct: 23 IKEGEFFTLLGPSGCGKTTLLRLIAGFETP--TSGEILLDGKDITNLPPHKRPVNTVFQN 80
Query: 668 -SWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN-LSGGQ 725
+ T+ ENI FG +++ E+ E A E L R + LSGGQ
Sbjct: 81 YALFPHLTVFENIAFGLRLKKLPKAEIKERVA-----EALDLVQLEGYANRKPSQLSGGQ 135
Query: 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK----TVLYTTH-QL 780
+QR+ +ARA+ + V + D+P A+D + + L L QK T ++ TH Q
Sbjct: 136 QQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLE-LKRL--QKELGITFVFVTHDQE 192
Query: 781 EFLDAADLVLVMKDGKIEQSGKYEDL 806
E L +D + VM GKI+Q G E++
Sbjct: 193 EALTMSDRIAVMNKGKIQQIGTPEEI 218
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 6e-13
Identities = 69/218 (31%), Positives = 105/218 (48%), Gaps = 31/218 (14%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-----------AYVPQS- 667
I G VA+ G GSGK++LL I G + SG I+ HG +V Q
Sbjct: 25 IPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGH-IRFHGTDVSRLHARDRKVGFVFQHY 83
Query: 668 SWIQTGTIRENILFGKDM--RQSFYEEVLEGCALNQDI----EMWADGDLSVVGER-GIN 720
+ + T+ +NI FG + R+ E A+ + EM L+ + +R
Sbjct: 84 ALFRHMTVFDNIAFGLTVLPRR----ERPNAAAIKAKVTQLLEMV---QLAHLADRYPAQ 136
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--TVLYTTH 778
LSGGQKQR+ LARA+ + + D+PF A+DA L ++ L L + T ++ TH
Sbjct: 137 LSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKEL-RRWLRQLHEELKFTSVFVTH 195
Query: 779 -QLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELV 815
Q E ++ AD V+VM G IEQ+G + + + + V
Sbjct: 196 DQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPATRFV 233
|
Length = 353 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 7e-13
Identities = 38/126 (30%), Positives = 65/126 (51%), Gaps = 11/126 (8%)
Query: 1208 IELENLLVQYNPTL---PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGG 1264
IELEN+ + T L ++ P + G++G +G+GKSTL++ + + P+ G
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 1265 RILIDGVDI---SMIGLQDLRSRLSIIPQDPMLFQG-TVRTNLD-PLE--QHSDQEIWEV 1317
+ +DG D+ S L+ LR ++ +I Q L TV N+ PLE EI +
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEI-KQ 120
Query: 1318 KISKLL 1323
++++LL
Sbjct: 121 RVAELL 126
|
Length = 339 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 8e-13
Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1266
IE++NL + VLKGI+ + GE + ++G +GSGKSTL++ L + EP G I
Sbjct: 3 IEIKNLSKSFGDKE--VLKGISLSVEKGEV-VVIIGPSGSGKSTLLRCLNGLEEPDSGSI 59
Query: 1267 LIDGVDIS-MIGLQDLRSRLSIIPQDPMLF 1295
+DG D+ + LR ++ ++ Q LF
Sbjct: 60 TVDGEDVGDKKDILKLRRKVGMVFQQFNLF 89
|
Length = 240 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 8e-13
Identities = 33/90 (36%), Positives = 54/90 (60%), Gaps = 4/90 (4%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
IE+ENL Y P LK ++ + + + ++G +G+GKSTL++ L +VEP+ G +L
Sbjct: 1 IEVENLSKTY-PNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVL 59
Query: 1268 IDGVDISMIG---LQDLRSRLSIIPQDPML 1294
IDG DI+ + L+ LR ++ +I Q L
Sbjct: 60 IDGTDINKLKGKALRQLRRQIGMIFQQFNL 89
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 1e-12
Identities = 91/407 (22%), Positives = 159/407 (39%), Gaps = 42/407 (10%)
Query: 929 LIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILN 988
LI +I + LL + + + + L+ I +F P+SFF + + I++
Sbjct: 202 LIIAYII----QQILSYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVS 257
Query: 989 RCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQA-AWQVFPLFLVILGISIWYQAYY 1047
R + S +D LA +L + I++++ Q LFL+ L Y
Sbjct: 258 RFTDASSIIDA-----LASTILSLFLDMWILVIVGLFLVRQNMLLFLLSLLSIPVYAVII 312
Query: 1048 ITTARELARM---VGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTF 1104
I R ++ A + E + G TI+ E + S DY +F
Sbjct: 313 ILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSF 372
Query: 1105 HNCGT---MEWLCLRINLLFN-----FAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLN 1156
+ + L+ N +LV+ +TL + L A L
Sbjct: 373 KYQKADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQ------LITFNALLSYFLT 426
Query: 1157 VLQAWVIWNLCNVENKM----ISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELEN 1212
L+ N+ N++ K+ ++ R+ + + SE I + + +G I + +
Sbjct: 427 PLE-----NIINLQPKLQAARVANNRLNEVYLVDSE---FINKKKRTELNNLNGDIVIND 478
Query: 1213 LLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVD 1272
+ Y +L I+ T K +VG +GSGKSTL + L + G IL++G
Sbjct: 479 VSYSYGYGSN-ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFS 537
Query: 1273 ISMIGLQDLRSRLSIIPQDPMLFQGTVRTNL--DPLEQHSDQEIWEV 1317
+ I LR ++ +PQ+P +F G++ NL E S EIW
Sbjct: 538 LKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAA 584
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.8 bits (177), Expect = 1e-12
Identities = 58/241 (24%), Positives = 95/241 (39%), Gaps = 49/241 (20%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSW------IQTG 673
+ +G + + G GSGKS+L + G +P S +I G+ + IQ
Sbjct: 314 LREGETLGLVGESGSGKSTLARILAGLLP-PSSGSIIFDGQDLDLTGGELRRLRRRIQMV 372
Query: 674 ------------TIRENI--------LFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSV 713
T+ + + R++ E+LE L +
Sbjct: 373 FQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEF---------- 422
Query: 714 VGERGIN-LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK-----QCLMGL 767
+R + LSGGQ+QR+ +ARA+ + I D+P SA+D + Q +GL
Sbjct: 423 -LDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGL 481
Query: 768 LSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLD 826
T L+ +H L + AD V VM DG+I + G E + + R++ A D
Sbjct: 482 ----TYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPYTRKLLAAVPKPD 537
Query: 827 Q 827
Sbjct: 538 P 538
|
Length = 539 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 1e-12
Identities = 55/216 (25%), Positives = 93/216 (43%), Gaps = 44/216 (20%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSI-----LGEIPRISGAAIKVHGKKAYVPQSSWIQ- 671
+ I KG A+ G G GKS+LL + L G + + GK Y ++
Sbjct: 21 LDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGE-VLLDGKDIYDLDVDVLEL 79
Query: 672 --------------TGTIRENILFG------KDMRQSFY--EEVLEGCALNQDIEMWADG 709
G+I +N+ +G K + EE L AL W +
Sbjct: 80 RRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAAL------WDE- 132
Query: 710 DLSVVGER--GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL 767
V +R + LSGGQ+QR+ LARA+ + +V + D+P SA+D + T ++ + L
Sbjct: 133 ----VKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPIS-TAKIEELIAEL 187
Query: 768 LSQKTVLYTTHQLE-FLDAADLVLVMKDGKIEQSGK 802
+ T++ TH ++ AD + +G++ + G
Sbjct: 188 KKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGP 223
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 1e-12
Identities = 57/219 (26%), Positives = 92/219 (42%), Gaps = 46/219 (21%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILG-EIP-----RISGAAIKVHGKKAYVPQSSWI--- 670
+ KG + G G+GKS+L+ I G E P + G + + K I
Sbjct: 28 VPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMI 87
Query: 671 -------QTGTIRENILF-------GKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGE 716
+ T+ EN+ K + E+LE L + +
Sbjct: 88 FQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPA-------- 139
Query: 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTH----LFK--QCLMGLLSQ 770
LSGGQKQR+ +ARA+ +N V + D+ SA+D T T L + +GL
Sbjct: 140 ---QLSGGQKQRVGIARALANNPKVLLCDEATSALDPET-TQSILALLRDINRELGL--- 192
Query: 771 KTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDLIA 808
T++ TH++E + D V VM+ G++ + G E++ A
Sbjct: 193 -TIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 2e-12
Identities = 52/207 (25%), Positives = 88/207 (42%), Gaps = 51/207 (24%)
Query: 616 DKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSS------- 668
+ I KG A+ G GSGKS+LL+ I+G + + + ++G++ S
Sbjct: 17 LNLTIEKGKMYAIIGESGSGKSTLLN-IIGLLEKFDSGQVYLNGQETPPLNSKKASKFRR 75
Query: 669 -----------WIQTGTIRENILFG--------KDMRQSFYEEVLEGCALNQDIEMWADG 709
I+ T+ EN+ G K+ R+ E LE LN ++
Sbjct: 76 EKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKE-ALEKVGLNLKLK----- 129
Query: 710 DLSVVGERGI-NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL 768
+ I LSGG++QR+ LARA+ + + D+P ++D + ++ LL
Sbjct: 130 -------QKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKN-----RDEVLDLL 177
Query: 769 SQ-----KTVLYTTHQLEFLDAADLVL 790
+ KT++ TH E AD V+
Sbjct: 178 LELNDEGKTIIIVTHDPEVAKQADRVI 204
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 3e-12
Identities = 59/187 (31%), Positives = 92/187 (49%), Gaps = 29/187 (15%)
Query: 623 GSKVAVCGSVGSGKSSLLSSILGEIP----RISGAAIKVHG---KKAYVPQSS----WIQ 671
G + V G G GK++LL+ I G +P I+ V G ++ V Q+ W
Sbjct: 27 GELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEGLLPWR- 85
Query: 672 TGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI-NLSGGQKQRIQ 730
+++N+ FG + + LE +M L +R I LSGGQ+QR+
Sbjct: 86 --NVQDNVAFGLQLAGVEKMQRLEIAH-----QMLKKVGLEGAEKRYIWQLSGGQRQRVG 138
Query: 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKT---VLYTTHQLE---FLD 784
+ARA+ +N + + D+PF A+DA T + Q L+ L Q+T VL TH +E F+
Sbjct: 139 IARALAANPQLLLLDEPFGALDAFTREQM--QTLLLKLWQETGKQVLLITHDIEEAVFM- 195
Query: 785 AADLVLV 791
A +LVL+
Sbjct: 196 ATELVLL 202
|
Length = 255 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 3e-12
Identities = 55/202 (27%), Positives = 87/202 (43%), Gaps = 40/202 (19%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTG----- 673
++ +G ++ + G G+GKS+LL + G P SG + V G+ + + + G
Sbjct: 44 EVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSG-TVTVRGRVSSLLG---LGGGFNPEL 99
Query: 674 TIRENILF--------GKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725
T RENI K++ + +E++E L I DL V S G
Sbjct: 100 TGRENIYLNGRLLGLSRKEIDE-KIDEIIEFSELGDFI------DLPVK-----TYSSGM 147
Query: 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQ-C---LMGLLSQ-KTVLYTTHQL 780
K R+ A A D+ + D+ + DA F++ C L LL Q KTV+ +H
Sbjct: 148 KARLAFAIATALEPDILLIDEVLAVGDAA-----FQEKCQRRLRELLKQGKTVILVSHDP 202
Query: 781 EFL-DAADLVLVMKDGKIEQSG 801
+ D LV++ GKI G
Sbjct: 203 SSIKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.0 bits (166), Expect = 4e-12
Identities = 65/214 (30%), Positives = 96/214 (44%), Gaps = 32/214 (14%)
Query: 623 GSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK----------AYVPQSS---W 669
GS A+ G GSGKS+L +++G + R++ I + G+ AYVPQS W
Sbjct: 33 GSIAALVGVNGSGKSTLFKALMGFV-RLASGKISILGQPTRQALQKNLVAYVPQSEEVDW 91
Query: 670 IQTGTIRENILFGKDMRQSFYEEVLEGCALNQDI--EMWADGDLSVVGERGI-NLSGGQK 726
+ + ++ G+ + ++ I A D+ R I LSGGQK
Sbjct: 92 SFPVLVEDVVMMGRYGHMGWLRR---AKKRDRQIVTAALARVDMVEFRHRQIGELSGGQK 148
Query: 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--KTVLYTTHQL---- 780
+R+ LARA+ V + D+PF+ VD T + L+ L KT+L +TH L
Sbjct: 149 KRVFLARAIAQQGQVILLDEPFTGVDVKTEARIIS--LLRELRDEGKTMLVSTHNLGSVT 206
Query: 781 EFLDAADLVLVMKDGKIEQSGKYEDLIADQNSEL 814
EF D VM G + SG E +N EL
Sbjct: 207 EFCDYT----VMVKGTVLASGPTETTFTAENLEL 236
|
Length = 272 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 4e-12
Identities = 59/218 (27%), Positives = 89/218 (40%), Gaps = 45/218 (20%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKA--------------YVP 665
I +G + + G GSGKS+L + G SG+ I + GK V
Sbjct: 30 IERGETLGIVGESGSGKSTLARLLAGLEKPSSGS-ILLDGKPLAPKKRAKAFYRPVQMVF 88
Query: 666 QSS-------WIQTGTIRENILF-GKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGER 717
Q + E + G Q E+L+ L + D R
Sbjct: 89 QDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPS---FLD--------R 137
Query: 718 GIN-LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK----- 771
+ LSGGQ+QRI +ARA+ + I D+P SA+D Q L LL K
Sbjct: 138 RPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQ----AQILNLLLELKKERGL 193
Query: 772 TVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLIA 808
T L+ +H L ++ D + VM +G+I + G E+L++
Sbjct: 194 TYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231
|
Length = 252 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 4e-12
Identities = 28/85 (32%), Positives = 50/85 (58%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
I++EN+ Y + LK ++ + + ++G GSGKST+ + L +++P G I
Sbjct: 8 IKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIK 67
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDP 1292
IDG+ IS L+++R ++ II Q+P
Sbjct: 68 IDGITISKENLKEIRKKIGIIFQNP 92
|
Length = 271 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 4e-12
Identities = 35/98 (35%), Positives = 54/98 (55%), Gaps = 5/98 (5%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
++LENL +Y L G++ T G++G G+GK+TL++ L + PS G I
Sbjct: 1 LQLENLTKRYGKK--RALDGVSLTLG-PGMYGLLGPNGAGKTTLMRILATLTPPSSGTIR 57
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLFQG-TVRTNLD 1304
IDG D+ + Q LR R+ +PQ+ ++ TVR LD
Sbjct: 58 IDGQDV-LKQPQKLRRRIGYLPQEFGVYPNFTVREFLD 94
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 4e-12
Identities = 60/203 (29%), Positives = 90/203 (44%), Gaps = 33/203 (16%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILG-EIPRISGAAIK----VHGKKAYVPQSSWIQTGT 674
+G A+ G GSGKS+LL+ I G E P+ I A P S Q
Sbjct: 21 FAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQ--- 77
Query: 675 IRENILFGK-DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI------NLSGGQKQ 727
EN LF + Q+ + G L + + L+ VG G+ LSGG++Q
Sbjct: 78 --ENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQ 135
Query: 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS------QKTVLYTTHQLE 781
R+ LAR + + V + D+PF+A+D + ++ L+ + TVL THQ E
Sbjct: 136 RVALARVLVRDKPVLLLDEPFAALDP-----ALRAEMLDLVLDLHAETKMTVLMVTHQPE 190
Query: 782 FLDA---ADLVLVMKDGKIEQSG 801
DA A V+ + +G+I G
Sbjct: 191 --DAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 4e-12
Identities = 57/205 (27%), Positives = 93/205 (45%), Gaps = 30/205 (14%)
Query: 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILF 681
KG + + G G+GK++LL +ILG IP G +KV G P W G + + F
Sbjct: 5 KGELLGLLGPNGAGKTTLLRAILGLIPPAKGT-VKVAGAS---PGKGWRHIGYVPQRHEF 60
Query: 682 GKDMRQSFYEEVLEGCA---------LNQDIEMWADG----DLSVVGERGI-NLSGGQKQ 727
D S V+ G D D L+ + +R + LSGGQ+Q
Sbjct: 61 AWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQ 120
Query: 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-----KTVLYTTHQL-E 781
R+ +ARA+ + V + D+PF+ +D T ++ L L + +L TTH L +
Sbjct: 121 RVLVARALATRPSVLLLDEPFTGLDMPT-----QELLTELFIELAGAGTAILMTTHDLAQ 175
Query: 782 FLDAADLVLVMKDGKIEQSGKYEDL 806
+ D V+++ +G++ G + L
Sbjct: 176 AMATCDRVVLL-NGRVIADGTPQQL 199
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 5e-12
Identities = 31/105 (29%), Positives = 57/105 (54%), Gaps = 14/105 (13%)
Query: 1208 IELENLLVQY--NPTLPMVLKGITCT-FPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGG 1264
+E++NL V + L ++ + GE +G+VG +GSGKSTL +A+ +++P+ G
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGET-LGLVGESGSGKSTLARAILGLLKPTSG 60
Query: 1265 RILIDGVDISMIG---LQDLRSRLSIIPQDPMLFQGTVRTNLDPL 1306
I+ DG D+ + + R + ++ QDPM ++L+P
Sbjct: 61 SIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPM-------SSLNPR 98
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 5e-12
Identities = 53/226 (23%), Positives = 101/226 (44%), Gaps = 38/226 (16%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILG-EIPRISGAAIKVHGKK---------------- 661
+I KG + G G+GKS+LL I E P + ++ V G+
Sbjct: 28 EIPKGEIFGIIGYSGAGKSTLLRLINLLERP--TSGSVFVDGQDLTALSEAELRQLRQKI 85
Query: 662 AYVPQS-SWIQTGTIRENILFG----KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGE 716
+ Q + + + T+ EN+ F + + V E L + AD +
Sbjct: 86 GMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVG-LSDKADRYPA---- 140
Query: 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK---TV 773
LSGGQKQR+ +ARA+ +N + + D+ SA+D T + + L+ ++++ T+
Sbjct: 141 ---QLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILE--LLKDINRELGLTI 195
Query: 774 LYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQM 818
+ TH++E + D V V+ G++ + G ++ A+ + ++
Sbjct: 196 VLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANPKHAITQEF 241
|
Length = 339 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 6e-12
Identities = 36/114 (31%), Positives = 63/114 (55%), Gaps = 2/114 (1%)
Query: 1205 SGKIELENLLVQYNPTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSG 1263
SG IE++ + +Y P P++L ++ PGE + +VG +GSGKSTL++ L P
Sbjct: 449 SGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEF-VAIVGPSGSGKSTLLRLLLGFETPES 507
Query: 1264 GRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEV 1317
G + DG D++ + +Q +R +L ++ Q+ L G++ N+ + E WE
Sbjct: 508 GSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEA 561
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 6e-12
Identities = 49/192 (25%), Positives = 88/192 (45%), Gaps = 22/192 (11%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK---------AYVPQSSWI 670
+ KG + G G+GK++ + ILG I SG + GK Y+P+ +
Sbjct: 23 VEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGE-VLFDGKPLDIAARNRIGYLPEERGL 81
Query: 671 -QTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADG-DLSVVGERGIN-LSGGQKQ 727
+ + +++ ++ EE I+ W + +LS + + LS G +Q
Sbjct: 82 YPKMKVIDQLVYLAQLKGLKKEEARR------RIDEWLERLELSEYANKRVEELSKGNQQ 135
Query: 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-KTVLYTTHQLEFLDA- 785
++Q AV + ++ I D+PFS +D L K + L KTV+ +THQ+E ++
Sbjct: 136 KVQFIAAVIHDPELLILDEPFSGLDP-VNVELLKDVIRELARAGKTVILSTHQMELVEEL 194
Query: 786 ADLVLVMKDGKI 797
D VL++ G+
Sbjct: 195 CDRVLLLNKGRA 206
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 6e-12
Identities = 44/224 (19%), Positives = 91/224 (40%), Gaps = 24/224 (10%)
Query: 607 FKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH----GKK 661
+ + D + +G + G G+GK++LL I + SG
Sbjct: 11 YGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDP 70
Query: 662 AYVPQSSWIQTG--------TIRENIL-FGK--DMRQSFYEEVLEGCALNQDIEMWADGD 710
++V + + G T REN+ F + + + + + L++ +++
Sbjct: 71 SFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIA--ELSKRLQL----- 123
Query: 711 LSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ 770
L + R S G KQ++ +ARA+ + + + D+P S +D T
Sbjct: 124 LEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEG 183
Query: 771 KTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIADQNSE 813
+ V++++H ++ ++A D V+V+ G++ G E L A
Sbjct: 184 RAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDARTVLR 227
|
Length = 245 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 68.5 bits (167), Expect = 7e-12
Identities = 55/205 (26%), Positives = 98/205 (47%), Gaps = 20/205 (9%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEI-PRISGAAIKVHGKK-----------AYVP 665
++I G +A+ G G GK++LL +I G + I + + A +
Sbjct: 26 LEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLF 85
Query: 666 QS-SWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724
Q+ + + +N+ FG ++ ++ E A +++ GD + LSGG
Sbjct: 86 QNYALFPHLKVEDNVAFGLRAQKMPKADIAERVA--DALKLVGLGDAA--AHLPAQLSGG 141
Query: 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQC--LMGLLSQKTVLYTTH-QLE 781
+QRI +ARA+ DV + D+P SA+DA+ ++ ++ L L + T+L TH Q +
Sbjct: 142 MQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDD 201
Query: 782 FLDAADLVLVMKDGKIEQSGKYEDL 806
L AD +MKDG++ G+ + L
Sbjct: 202 ALTLADKAGIMKDGRLAAHGEPQAL 226
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 7e-12
Identities = 49/203 (24%), Positives = 83/203 (40%), Gaps = 42/203 (20%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTI-- 675
+ + KG G G+GK++ + ILG I + I GK + + G +
Sbjct: 21 LHVKKGEIYGFLGPNGAGKTTTMKIILGLI-KPDSGEITFDGKSYQKNIEALRRIGALIE 79
Query: 676 ----------RENILF---GKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN-- 720
REN+ +R+ +EVL+ VVG +
Sbjct: 80 APGFYPNLTARENLRLLARLLGIRKKRIDEVLD-----------------VVGLKDSAKK 122
Query: 721 ----LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-KTVLY 775
S G KQR+ +A A+ N D+ I D+P + +D G ++ ++ L Q TVL
Sbjct: 123 KVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDP-DGIKELRELILSLRDQGITVLI 181
Query: 776 TTHQLEFLD-AADLVLVMKDGKI 797
++H L + AD + ++ GK+
Sbjct: 182 SSHLLSEIQKVADRIGIINKGKL 204
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 68.4 bits (167), Expect = 1e-11
Identities = 38/119 (31%), Positives = 69/119 (57%), Gaps = 3/119 (2%)
Query: 1200 PEWPS-SGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRV 1258
PE P+ G +E ++ ++ + ++ + + +VG TG+GK+TLI L RV
Sbjct: 326 PELPNVKGAVEFRHITFEF-ANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRV 384
Query: 1259 VEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLD-PLEQHSDQEIWE 1316
+P+ G+ILIDG+DI+ + + LR ++ + QD LF ++R N+ E +D+E++E
Sbjct: 385 YDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYE 443
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 1e-11
Identities = 34/99 (34%), Positives = 56/99 (56%), Gaps = 5/99 (5%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
+EL+N+ +Y VL ++ + + ++G +GSGKSTL++ + + EP G IL
Sbjct: 1 LELKNVSKRYGQKT--VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSIL 58
Query: 1268 IDGVDISMIG--LQDLRSRLSIIPQDPMLFQG-TVRTNL 1303
IDG D++ + L LR R+ ++ QD LF TV N+
Sbjct: 59 IDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENI 97
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 1e-11
Identities = 59/208 (28%), Positives = 96/208 (46%), Gaps = 29/208 (13%)
Query: 609 KPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQS 667
KP L D + I G V V G G GK++LL+ I G + G+ I+++G++ P +
Sbjct: 16 KPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGS-IQLNGRRIEGPGA 74
Query: 668 S------------WIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVG 715
W+ + +N+ FG +R + E +M A L
Sbjct: 75 ERGVVFQNEALLPWL---NVIDNVAFGLQLRGIEKAQRREIAH-----QMLALVGLEGAE 126
Query: 716 ERGI-NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL--LSQKT 772
+ I LSGG +QR+ +ARA+ + + D+PF A+DA T + ++ L+ L + K
Sbjct: 127 HKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQM-QELLLDLWQETGKQ 185
Query: 773 VLYTTHQLE---FLDAADLVLVMKDGKI 797
VL TH +E FL +VL G++
Sbjct: 186 VLLITHDIEEALFLATRLVVLSPGPGRV 213
|
Length = 259 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 1e-11
Identities = 53/194 (27%), Positives = 83/194 (42%), Gaps = 33/194 (17%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENI 679
I +G + + G G GKS+L ILG SG I GK +
Sbjct: 36 IKEGETLGLVGESGCGKSTLGRLILGLEEPTSGE-ILFEGK----------------DIT 78
Query: 680 LFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNS 739
K+ R+ E+LE L ++ LSGGQ+QRI +ARA+ N
Sbjct: 79 KLSKEERRERVLELLEKVGLPEEFLYRYP----------HELSGGQRQRIGIARALALNP 128
Query: 740 DVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK---TVLYTTHQLE-FLDAADLVLVMKDG 795
+ + D+P SA+D + L+ L ++ T L+ +H L +D + VM G
Sbjct: 129 KLIVADEPVSALDVSVQAQILN--LLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLG 186
Query: 796 KIEQSGKYEDLIAD 809
KI + G E++ ++
Sbjct: 187 KIVEIGPTEEVFSN 200
|
Length = 268 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 1e-11
Identities = 60/202 (29%), Positives = 93/202 (46%), Gaps = 30/202 (14%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRE 677
+ I KG VA+ GS GSGKS+LL +LG + + + +G+ S+ + +R
Sbjct: 26 LSIGKGEIVAIVGSSGSGKSTLLH-LLGGLDNPTSGEVLFNGQSLSKLSSN--ERAKLR- 81
Query: 678 NILFGKDMRQSFYEEVLEGCALN-------------QDIEMWADGDLSVVG-ERGIN--- 720
N G F+ + + AL ++ + A L VG E IN
Sbjct: 82 NKKLG--FIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRP 139
Query: 721 --LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKT-VLY 775
LSGG++QR+ +ARA+ + + + D+P +D + +F LM L+ T L
Sbjct: 140 SELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIF--DLMLELNRELNTSFLV 197
Query: 776 TTHQLEFLDAADLVLVMKDGKI 797
TH LE D VL MKDG++
Sbjct: 198 VTHDLELAKKLDRVLEMKDGQL 219
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 1e-11
Identities = 49/201 (24%), Positives = 86/201 (42%), Gaps = 37/201 (18%)
Query: 627 AVCGSVGSGKSSLLSSILGEIPR--ISGAAIKVHGKK----------AYVPQSS-WIQTG 673
A+ GS GSGK++LL +I G + + I +G+ AYV Q +
Sbjct: 37 AILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGL 96
Query: 674 TIRENILF------GKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727
T+RE + + + + ++ +E L + G +SGG+++
Sbjct: 97 TVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDL------ALTRIGGNLVKGISGGERR 150
Query: 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-----KTVLYTTHQ--L 780
R+ +A + + V I D+P S +D+ T +L LSQ + V+ T HQ
Sbjct: 151 RVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVS-----TLSQLARRNRIVILTIHQPRS 205
Query: 781 EFLDAADLVLVMKDGKIEQSG 801
+ D +L++ G+I SG
Sbjct: 206 DLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 68.4 bits (167), Expect = 2e-11
Identities = 81/361 (22%), Positives = 163/361 (45%), Gaps = 45/361 (12%)
Query: 490 SLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLS-ALATFRILQEPIYN 548
+L+ + I F+ + T +++ T G +L+ A+ LQ + +
Sbjct: 1107 TLRWFQMRIDIIFVFFFIAVTFIAIGTNQD-----GEGEVGIILTLAMNILSTLQWAVNS 1161
Query: 549 LPELISMIAQTKVSLYRIQEFI---KEDNQKKPITEPTSKASDVAIDIEAGEYAWDAR-E 604
++ ++ S+ R+ +FI +E+ + ++ + I+ + W + +
Sbjct: 1162 SIDVDGLMR----SVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQ 1217
Query: 605 ENFKKPTIKLTD---------KMKIMKGSKVAVCGSVGSGKSSLLSSIL------GEIP- 648
+ + T K T+ + G +V + G GSGKS+LLS++L GEI
Sbjct: 1218 MDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQI 1277
Query: 649 -RISGAAIKVHG-KKAY--VPQSSWIQTGTIRENILFGKDMRQSFYEE----VLEGCALN 700
+S ++ + +KA+ +PQ +I +GT R+N+ D + + +E V E L
Sbjct: 1278 DGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNL----DPYEQWSDEEIWKVAEEVGLK 1333
Query: 701 QDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLF 760
IE + D V+ + G LS G KQ + LAR++ S + + + D+P + +D T +
Sbjct: 1334 SVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVT-LQII 1392
Query: 761 KQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKA 820
++ L S TV+ + H++E L LV++ ++Q + L+ + + L +Q +
Sbjct: 1393 RKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNE--TSLFKQAMS 1450
Query: 821 H 821
Sbjct: 1451 A 1451
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.2 bits (161), Expect = 2e-11
Identities = 61/235 (25%), Positives = 100/235 (42%), Gaps = 44/235 (18%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI----------KVHGKKAYV----- 664
I KG + + G GSGKS+L + G + G + K+ G + V
Sbjct: 25 IKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQ 84
Query: 665 -PQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVG------ER 717
P++ ++ T+ E++ FG + C +I D L+ +G
Sbjct: 85 NPETQFVGR-TVEEDLAFGPE----------NLCLPPIEIRKRVDRALAEIGLEKYRHRS 133
Query: 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTT 777
LSGGQ Q + LA + + IFD+ S +D +G + ++ KT++Y T
Sbjct: 134 PKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYIT 193
Query: 778 HQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQN-----------SELVRQMKAH 821
H LE L AD ++VM GKI G+ E++++D + EL +K H
Sbjct: 194 HNLEELHDADRIIVMDRGKIVLEGEPENVLSDVSLQTLGLTPPSLIELAENLKMH 248
|
Length = 274 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 65.2 bits (160), Expect = 2e-11
Identities = 56/227 (24%), Positives = 104/227 (45%), Gaps = 48/227 (21%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK--------------AY 663
+++ KG V G G GK++LL +++G +P SG +I++ G+ AY
Sbjct: 21 LEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSG-SIRLDGEDITKLPPHERARAGIAY 79
Query: 664 VPQSSWI-QTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDL-----SVVGER 717
VPQ I T+ EN+L G ++ + E++ +L ++G R
Sbjct: 80 VPQGREIFPRLTVEENLLTGLAALPRRSRKIPD--------EIY---ELFPVLKEMLGRR 128
Query: 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAV------DAHTGTHLFKQCLMGLLSQK 771
G +LSGGQ+Q++ +ARA+ + + + D+P + D + + L ++
Sbjct: 129 GGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIG-------RVIRRLRAEG 181
Query: 772 --TVLYTTHQLEF-LDAADLVLVMKDGKIEQSGKYEDLIADQNSELV 815
+L L+F + AD VM+ G++ SG ++L D+ +
Sbjct: 182 GMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELDEDKVRRYL 228
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 2e-11
Identities = 56/215 (26%), Positives = 97/215 (45%), Gaps = 45/215 (20%)
Query: 626 VAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------KKAYVP-----------QS 667
A+ G GSGK++L+ I G R I ++G K ++P ++
Sbjct: 26 TAIFGRSGSGKTTLIRLIAGLT-RPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEA 84
Query: 668 SWIQTGTIRENILFGK-----DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722
++R N+ +G R+ +E V IE+ G L +G LS
Sbjct: 85 RLFPHLSVRGNLRYGMKRARPSERRISFERV---------IELLGIGHL--LGRLPGRLS 133
Query: 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL--LSQKT---VLYTT 777
GG+KQR+ + RA+ S+ + + D+P +A+D + L L L + +LY +
Sbjct: 134 GGEKQRVAIGRALLSSPRLLLMDEPLAALD----DPRKYEILPYLERLHAEFGIPILYVS 189
Query: 778 HQL-EFLDAADLVLVMKDGKIEQSGKYEDLIADQN 811
H L E L AD V+V++DG++ +G ++ A +
Sbjct: 190 HSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPD 224
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 2e-11
Identities = 66/221 (29%), Positives = 102/221 (46%), Gaps = 41/221 (18%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILG-EIPRISGAAIKVHGKKAYVPQSSWIQTG----- 673
I +G+ V + G G GK+++L + G E P + I + G+ V S IQ
Sbjct: 29 IKQGTMVTLLGPSGCGKTTVLRLVAGLEKP--TEGQIFIDGED--VTHRS-IQQRDICMV 83
Query: 674 ----------TIRENILFGKDMRQSFYEE----VLEGCALNQDIEMWADGDLSVVGERGI 719
++ EN+ +G M EE V E L DL+ +R +
Sbjct: 84 FQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELV---------DLAGFEDRYV 134
Query: 720 N-LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK---TVLY 775
+ +SGGQ+QR+ LARA+ V +FD+P S +DA+ + ++ + L Q+ T LY
Sbjct: 135 DQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREK--IRELQQQFNITSLY 192
Query: 776 TTH-QLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELV 815
TH Q E +D V+VM GKI Q G ++L S +
Sbjct: 193 VTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPASRFM 233
|
Length = 351 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 2e-11
Identities = 45/195 (23%), Positives = 82/195 (42%), Gaps = 51/195 (26%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILG--EIPRISGAAIKVHGKK----------AYVPQ 666
K G A+ G G+GKS+LL+++ G +SG + ++G+ YVPQ
Sbjct: 31 KAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSG-EVLINGRPLDKRSFRKIIGYVPQ 89
Query: 667 -SSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725
T T+RE ++F +R LSGG+
Sbjct: 90 DDILHPTLTVRETLMFAAKLRG---------------------------------LSGGE 116
Query: 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-KTVLYTTHQL--EF 782
++R+ +A + SN + D+P S +D+ + + L L +T++ + HQ E
Sbjct: 117 RKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMS-LLRRLADTGRTIICSIHQPSSEI 175
Query: 783 LDAADLVLVMKDGKI 797
+ D +L++ G++
Sbjct: 176 FELFDKLLLLSQGRV 190
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 3e-11
Identities = 57/208 (27%), Positives = 93/208 (44%), Gaps = 38/208 (18%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------------KKAY 663
I G VA+ G G+GKS+LL I + S +I + G +
Sbjct: 25 INPGEFVAIIGPSGAGKSTLLRCINRLV-EPSSGSILLEGTDITKLRGKKLRKLRRRIGM 83
Query: 664 VPQS-SWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVG------E 716
+ Q + I+ T+ EN+L G+ + + +L G +D E A L VG +
Sbjct: 84 IFQHYNLIERLTVLENVLHGRLGYKPTWRSLL-GRFSEEDKER-ALSALERVGLADKAYQ 141
Query: 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS------Q 770
R LSGGQ+QR+ +ARA+ D+ + D+P +++D T +M L
Sbjct: 142 RADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQ-----VMDYLKRINKEDG 196
Query: 771 KTVLYTTHQLEF-LDAADLVLVMKDGKI 797
TV+ HQ++ AD ++ +K G+I
Sbjct: 197 ITVIINLHQVDLAKKYADRIVGLKAGEI 224
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 3e-11
Identities = 58/202 (28%), Positives = 98/202 (48%), Gaps = 26/202 (12%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVP---------QSS 668
+ I +G +++ G G GKS+LL+ I G + + + + + GK+ P S
Sbjct: 6 LTIQQGEFISLIGHSGCGKSTLLNLISG-LAQPTSGGVILEGKQITEPGPDRMVVFQNYS 64
Query: 669 WIQTGTIRENILFG-----KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723
+ T+RENI D+ +S ++E + I + G +R LSG
Sbjct: 65 LLPWLTVRENIALAVDRVLPDLSKSERRAIVE-----EHIALV--GLTEAADKRPGQLSG 117
Query: 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--TVLYTTHQL- 780
G KQR+ +ARA+ V + D+PF A+DA T +L ++ LM + + TVL TH +
Sbjct: 118 GMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEE-LMQIWEEHRVTVLMVTHDVD 176
Query: 781 EFLDAADLVLVMKDGKIEQSGK 802
E L +D V+++ +G G+
Sbjct: 177 EALLLSDRVVMLTNGPAANIGQ 198
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 4e-11
Identities = 54/217 (24%), Positives = 90/217 (41%), Gaps = 54/217 (24%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYV--------PQSSW 669
+I KG +V + G G+GKS+LL I G SG +KV GK A + P+
Sbjct: 48 FEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSG-KVKVTGKVAPLIELGAGFDPE--- 103
Query: 670 IQTGTIRENILF--------GKDMRQSFYEEVLE----GCALNQDIEMWADGDLSVVGER 717
TG RENI K++ +E++E G ++Q ++
Sbjct: 104 -LTG--RENIYLRGLILGLTRKEI-DEKVDEIIEFAELGDFIDQPVK------------- 146
Query: 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQ-CLMGL----LSQKT 772
S G R+ + A + D+ + D+ + DA F++ CL L KT
Sbjct: 147 --TYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAA-----FQEKCLERLNELVEKNKT 199
Query: 773 VLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDLIA 808
++ +H L + D + ++ G+I G E++I
Sbjct: 200 IVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP 236
|
Length = 249 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 67.4 bits (164), Expect = 5e-11
Identities = 94/393 (23%), Positives = 171/393 (43%), Gaps = 35/393 (8%)
Query: 929 LIGVFIF-LSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRIL 987
LIG+F F LS SSF + + K + L L + SVF F D+ P S++
Sbjct: 105 LIGIFQFILSFISSF-------CMDVVTTKILKTLKLEFLKSVFYQDGQFHDNNPGSKL- 156
Query: 988 NRCSTDQSTVDTDIPYRLAGLAFALIQLLSII-ILMSQAAWQVFPLFLVILGISIWYQAY 1046
S +D + AG+ I + + + W +F + L I+ +
Sbjct: 157 ------TSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLCITCVFPLI 210
Query: 1047 YITTARELARMVGTRKAPILHH------FSESIAGATTIRCFNQENRFLLRSHSLIDDYS 1100
YI ++ +K +L++ E++ G T+ + E +L+ +L +
Sbjct: 211 YICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKT-ILKKFNLSEKLY 269
Query: 1101 CVTFHNCGTMEWLCL-RIN--LLFNFAF---FLVLIILVTLPRSAIDPSLAGLAATYGLN 1154
ME L + IN +L ++AF + II+ L + G + +
Sbjct: 270 SKYILKANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHG-GSVISIL 328
Query: 1155 LNVLQAWVIWN--LCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELEN 1212
L VL + + L N+ M S+E I + PLV +N+ + KI+ +N
Sbjct: 329 LGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRKPLV-ENNDDGKKLKDIKKIQFKN 387
Query: 1213 LLVQYNPTLPM-VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILI-DG 1270
+ Y+ + + K + T K VG +G GKST+++ + R+ +P+ G I+I D
Sbjct: 388 VRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDS 447
Query: 1271 VDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNL 1303
++ I L+ RS++ ++ QDP+LF +++ N+
Sbjct: 448 HNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNI 480
|
Length = 1466 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 5e-11
Identities = 57/222 (25%), Positives = 94/222 (42%), Gaps = 46/222 (20%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSI-----LGEIPRISGAAIKVHGKKAYVPQSSWIQ- 671
+ I K A+ G G GKS+LL S+ L RI G + G+ Y + ++
Sbjct: 22 LDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGK-VLFDGQDIYDKKIDVVEL 80
Query: 672 ---TG-----------TIRENILFG--------KDMRQSFYEEVLEGCALNQDIEMWADG 709
G +I +NI +G K EE L+ AL W +
Sbjct: 81 RRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAAL------WDE- 133
Query: 710 DLSVVGER----GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLM 765
V +R + LSGGQ+QR+ +ARA+ +V + D+P SA+D T ++ +
Sbjct: 134 ----VKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDP-IATGKIEELIQ 188
Query: 766 GLLSQKTVLYTTHQLEF-LDAADLVLVMKDGKIEQSGKYEDL 806
L + T++ TH ++ +D DG++ + G E +
Sbjct: 189 ELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQI 230
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 6e-11
Identities = 63/232 (27%), Positives = 105/232 (45%), Gaps = 38/232 (16%)
Query: 613 KLTDKMKI--MKGSKVAVCGSVGSGKSSLLSSILGEIPRISG------------AAIKVH 658
+L D + + G +A+ G G+GKS+LL ++ GE+ SG ++
Sbjct: 15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELA 74
Query: 659 GKKAYVPQSSWIQTG-TIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGER 717
+A +PQ+S + T++E + G+ +S E + Q + A DLS + R
Sbjct: 75 RHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQAL---AATDLSGLAGR 131
Query: 718 GIN-LSGGQKQRIQLAR------AVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ 770
LSGG++QR+QLAR + D+P SA+D H + + L Q
Sbjct: 132 DYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIA---H--QHHTLRLARQ 186
Query: 771 KT-----VLYTTHQLEFLDA--ADLVLVMKDGKIEQSGKYEDLIADQNSELV 815
VL H L L A AD ++++ G++ SG +D++ D+ E V
Sbjct: 187 LAREGGAVLAVLHDLN-LAAQYADRIVLLHQGRVIASGSPQDVLTDETLERV 237
|
Length = 259 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 7e-11
Identities = 72/278 (25%), Positives = 123/278 (44%), Gaps = 56/278 (20%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSI-LGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIREN 678
+ G V G+ G+GKS+L+ + L E P SG+ I V G+ + S + R
Sbjct: 28 VPAGQIYGVIGASGAGKSTLIRCVNLLERPT-SGSVI-VDGQD--LTTLSNSELTKARRQ 83
Query: 679 I--LFGKDMRQSF----YEEVLEGCAL--------NQDIEMWADGDLSVVG------ERG 718
I +F Q F V AL +I+ L++VG
Sbjct: 84 IGMIF-----QHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYP 138
Query: 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ------KT 772
NLSGGQKQR+ +ARA+ SN V + D+ SA+D T Q ++ LL + T
Sbjct: 139 SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPAT-----TQSILELLKEINRRLGLT 193
Query: 773 VLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPP 831
+L TH+++ + D V V+ +G++ + G ++ + + L ++ R +L ++ P
Sbjct: 194 ILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPKTPLAQKFI--RSTLH-LSIP 250
Query: 832 QEDKCLSRVPCQMSQITEERFAR--PISCGEFSGRSQD 867
++ ++ FA P+ EF+G++ D
Sbjct: 251 ED---------YQERLQATPFADSVPMVRLEFTGQTVD 279
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 8e-11
Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 2/117 (1%)
Query: 1187 SEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGS 1246
+EAP+V S P PE + + Y T L+ + T + +G+ G TGS
Sbjct: 295 AEAPVVKDGSEPVPEGRGELDVNIRQF--TYPQTDHPALENVNFTLKPGQMLGICGPTGS 352
Query: 1247 GKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNL 1303
GKSTL+ + R + S G I + ++ + L RSRL+++ Q P LF TV N+
Sbjct: 353 GKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNI 409
|
Length = 569 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 9e-11
Identities = 56/220 (25%), Positives = 102/220 (46%), Gaps = 35/220 (15%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGA------------AIKVHGKKAYVP 665
+K G+ + G G+GKS+L+ I I G+ I + K V
Sbjct: 24 VKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVF 83
Query: 666 QSSWIQTGTIRENILFG------KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719
Q + GT+++NI +G K++ +Y L LN++ +A D+
Sbjct: 84 QQPHLFEGTVKDNIEYGPMLKGEKNVDVEYY---LSIVGLNKE---YATRDVK------- 130
Query: 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--TVLYTT 777
NLSGG+ QR+ +AR + +N +V + D+P SA+D T T + ++ ++ L ++ TV++ T
Sbjct: 131 NLSGGEAQRVSIARTLANNPEVLLLDEPTSALDP-TSTEIIEELIVKLKNKMNLTVIWIT 189
Query: 778 HQLEFLD-AADLVLVMKDGKIEQSGKYEDLIADQNSELVR 816
H +E D + G + + K D + +E+ +
Sbjct: 190 HNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTK 229
|
Length = 241 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 62.8 bits (154), Expect = 9e-11
Identities = 34/100 (34%), Positives = 56/100 (56%), Gaps = 8/100 (8%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
+E+ENL Y + +L G++ T P + + ++GR G+GK+TL++ + ++ P G I
Sbjct: 1 LEVENLNAGYGKS--QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIR 58
Query: 1268 IDGVDISMIGLQ-DLRSRLSI--IPQDPMLFQG-TVRTNL 1303
DG DI+ GL R+R I +P+ +F TV NL
Sbjct: 59 FDGRDIT--GLPPHERARAGIGYVPEGRRIFPELTVEENL 96
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 1e-10
Identities = 63/228 (27%), Positives = 108/228 (47%), Gaps = 45/228 (19%)
Query: 619 KIMKGSKVAVCGSVGSGKSS---LLSSIL----GEIPRISGAAIKVHGKKAYV------- 664
+I +G VA+ G GSGKS+ +L+ +L GEI +I G I K +
Sbjct: 31 EINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI-KIDGITISKENLK-EIRKKIGII 88
Query: 665 ---PQSSWIQTGTIRENILFG--------KDMRQSFYEEVLEGCALNQDIEMWADGDLSV 713
P + +I T+ ++I FG K M+ + A +E + D +
Sbjct: 89 FQNPDNQFIGA-TVEDDIAFGLENKKVPPKKMKDIIDD-----LAKKVGMEDYLDKEPQ- 141
Query: 714 VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--K 771
NLSGGQKQR+ +A + N ++ IFD+ S +D G K+ ++ L K
Sbjct: 142 ------NLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPK-GKREIKKIMVDLRKTRKK 194
Query: 772 TVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMK 819
T++ TH ++ AD V+V +GK+ GK ++++ ++ E++ + K
Sbjct: 195 TLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNNK--EILEKAK 240
|
Length = 271 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 1e-10
Identities = 37/91 (40%), Positives = 54/91 (59%), Gaps = 8/91 (8%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1266
+E+ENL Y P LK I PGE + ++G +G+GKSTL++ + R+VEPS G I
Sbjct: 2 LEVENLSKVY-PNGKQALKNINLNINPGEF-VAIIGPSGAGKSTLLRCINRLVEPSSGSI 59
Query: 1267 LIDGVDISMIGLQDLRS-RLSIIPQDPMLFQ 1296
L++G DI+ + + LR R I M+FQ
Sbjct: 60 LLEGTDITKLRGKKLRKLRRRI----GMIFQ 86
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 62.1 bits (152), Expect = 1e-10
Identities = 56/224 (25%), Positives = 98/224 (43%), Gaps = 54/224 (24%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK--------------AY 663
+ + +G VA+ G G+GK++LL +I+G +P SG +I+ G+ Y
Sbjct: 21 LTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSG-SIRFDGRDITGLPPHERARAGIGY 79
Query: 664 VPQSSWIQTG-TIRENILFG-----KDMRQSFYEEVLEGCALNQDI-----EMWADGDLS 712
VP+ I T+ EN+L G + R++ E V E + E
Sbjct: 80 VPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYE-------LFPRLKERR------ 126
Query: 713 VVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPF-----SAVDAHTGTHLFKQCLMGL 767
+ LSGG++Q + +ARA+ S + + D+P V+ +F + + L
Sbjct: 127 --KQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVE-----EIF-EAIREL 178
Query: 768 LSQK-TVLYTTHQLEF-LDAADLVLVMKDGKIEQSGKYEDLIAD 809
+ T+L F L+ AD V++ G++ G +L+AD
Sbjct: 179 RDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLAD 222
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 1e-10
Identities = 60/206 (29%), Positives = 101/206 (49%), Gaps = 37/206 (17%)
Query: 627 AVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------KAY------VPQSSWI-Q 671
A+ G G+GKS+L+ I G +P SG +++ G KA+ VPQ +
Sbjct: 41 ALLGGNGAGKSTLMKIIAGIVPPDSGT-LEIGGNPCARLTPAKAHQLGIYLVPQEPLLFP 99
Query: 672 TGTIRENILFGKDMRQSFYEEVLE-----GCALNQDIEMWADGDLSVVGERGINLSGGQK 726
+++ENILFG RQ+ +++ + GC L+ D + G L V +
Sbjct: 100 NLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDS---SAGSLEV----------ADR 146
Query: 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKT-VLYTTHQL-EFLD 784
Q +++ R + +S + I D+P +++ LF + + LL+Q +++ +H+L E
Sbjct: 147 QIVEILRGLMRDSRILILDEPTASLTPAETERLFSR-IRELLAQGVGIVFISHKLPEIRQ 205
Query: 785 AADLVLVMKDGKIEQSGKYEDLIADQ 810
AD + VM+DG I SGK DL D
Sbjct: 206 LADRISVMRDGTIALSGKTADLSTDD 231
|
Length = 510 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.1 bits (158), Expect = 1e-10
Identities = 63/221 (28%), Positives = 112/221 (50%), Gaps = 29/221 (13%)
Query: 618 MKIMKGSKVAVCGSVGSGKSS---LLSSILG-----------EIPRISGAAIK-VHGKK- 661
+ I +G + G GSGKS+ LL+ ++ +I +IS A ++ V KK
Sbjct: 49 LAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKI 108
Query: 662 AYVPQS-SWIQTGTIRENILFGKDMRQSFYEEVLEGC--ALNQ-DIEMWADGDLSVVGER 717
A V QS + + T+ +N FG ++ EE E AL Q +E +A
Sbjct: 109 AMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPD----- 163
Query: 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCL-MGLLSQKTVLYT 776
LSGG +QR+ LARA+ N D+ + D+ FSA+D T + + + + Q+T+++
Sbjct: 164 --ELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFI 221
Query: 777 THQL-EFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVR 816
+H L E + D + +M++G++ Q G ++++ + ++ VR
Sbjct: 222 SHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVR 262
|
Length = 400 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 1e-10
Identities = 69/254 (27%), Positives = 109/254 (42%), Gaps = 38/254 (14%)
Query: 577 KPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGK 636
+ S VAID+ + K + + G + G G+GK
Sbjct: 28 EAKASIPGSMSTVAIDLA------GVSKSYGDKAVVNGL-SFTVASGECFGLLGPNGAGK 80
Query: 637 SSLLSSILGEIPRISGAAIKVHG------------KKAYVPQ-SSWIQTGTIRENIL--- 680
S++ ILG +G I V G + VPQ + T+REN+L
Sbjct: 81 STIARMILGMTSPDAGK-ITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFG 139
Query: 681 --FGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSN 738
FG R+ E V+ +E AD +S +LSGG K+R+ LARA+ ++
Sbjct: 140 RYFGMSTREI--EAVIPSLLEFARLESKADARVS-------DLSGGMKRRLTLARALIND 190
Query: 739 SDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-KTVLYTTHQLEFLDA-ADLVLVMKDGK 796
+ I D+P + +D H HL + L LL++ KT+L TTH +E + D + V++ G+
Sbjct: 191 PQLLILDEPTTGLDPH-ARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGR 249
Query: 797 IEQSGKYEDLIADQ 810
G+ LI +
Sbjct: 250 KIAEGRPHALIDEH 263
|
Length = 340 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 1e-10
Identities = 56/233 (24%), Positives = 93/233 (39%), Gaps = 33/233 (14%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI-----------KVHGKKAYVPQ 666
K+ +G G G+GK++ + + + SG A KV VPQ
Sbjct: 14 FKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQ 73
Query: 667 SSWIQTG-TIRENI-----LFG--KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERG 718
+ + T REN+ L+G KD + EE+LE E+ D V
Sbjct: 74 YASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLEL------FELGEAADRPVGT--- 124
Query: 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-KTVLYTT 777
SGG ++R+ +A ++ DV D+P + +D T + + L + T+L TT
Sbjct: 125 --YSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAI-WDYIRALKEEGVTILLTT 181
Query: 778 HQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVN 829
H +E D D + ++ G+I G E+L + + +SL
Sbjct: 182 HYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLGKDTLESRPRDIQSLKVEV 234
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 65.0 bits (158), Expect = 2e-10
Identities = 60/206 (29%), Positives = 92/206 (44%), Gaps = 23/206 (11%)
Query: 620 IMKGSKVAVCGSVGSGKSSL-------LSSILGEIPRISG---AAIKVHG---KKAYVPQ 666
I G KV + G G+GKSSL S GEI I G A I +H K +PQ
Sbjct: 1309 IHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEI-IIDGLNIAKIGLHDLRFKITIIPQ 1367
Query: 667 SSWIQTGTIRENILFGKDMRQSFYEE----VLEGCALNQDIEMWADGDLSVVGERGINLS 722
+ +G++R N+ D + +E LE L + D E G NLS
Sbjct: 1368 DPVLFSGSLRMNL----DPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLS 1423
Query: 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEF 782
GQ+Q + LARA+ + + + D+ +AVD T +L + + TVL H+L
Sbjct: 1424 VGQRQLVCLARALLRKTKILVLDEATAAVDLET-DNLIQSTIRTQFEDCTVLTIAHRLNT 1482
Query: 783 LDAADLVLVMKDGKIEQSGKYEDLIA 808
+ V+V+ G++ + G +L+
Sbjct: 1483 IMDYTRVIVLDKGEVAEFGAPSNLLQ 1508
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 2e-10
Identities = 38/111 (34%), Positives = 59/111 (53%), Gaps = 2/111 (1%)
Query: 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGR 1265
G IE N+ Y L+ I P K + +VGR+GSGKST+ L R + G
Sbjct: 340 GDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGE 399
Query: 1266 ILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNL--DPLEQHSDQEI 1314
IL+DG D+ L LR++++++ Q+ LF T+ N+ EQ+S ++I
Sbjct: 400 ILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQI 450
|
Length = 582 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.1 bits (153), Expect = 2e-10
Identities = 62/223 (27%), Positives = 106/223 (47%), Gaps = 31/223 (13%)
Query: 623 GSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK----------KAYVPQSSWIQT 672
G +++ GS GSGKS+ L I + + S +I V+G+ + V + ++
Sbjct: 31 GDVISIIGSSGSGKSTFLRCI-NFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRL 89
Query: 673 GTIRENILFGKDMRQSFY---EEVLEGCAL-----NQDIEMWADGDLSVVG--ERG---- 718
R ++F S E V+E Q+ A L+ VG ER
Sbjct: 90 LRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKY 149
Query: 719 -INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--KTVLY 775
++LSGGQ+QR+ +ARA+ +V +FD+P SA+D + + +M L++ KT++
Sbjct: 150 PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLR--IMQQLAEEGKTMVV 207
Query: 776 TTHQLEFL-DAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
TH++ F + V+ + GKIE+ G E L + S ++Q
Sbjct: 208 VTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGNPQSPRLQQ 250
|
Length = 257 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 2e-10
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 1219 PTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDG--VDISMI 1276
P P VLKG+ + + ++G G+GKSTL+ L ++ P G +LIDG +D S
Sbjct: 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRK 61
Query: 1277 GLQDLRSRLSIIPQDP--MLFQGTV 1299
GL + R R+ ++ QDP LF V
Sbjct: 62 GLLERRQRVGLVFQDPDDQLFAADV 86
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 2e-10
Identities = 53/203 (26%), Positives = 97/203 (47%), Gaps = 39/203 (19%)
Query: 627 AVCGSVGSGKSSLLSSILG----EIPRIS-----------GAAIKVHGKK-AYVPQSSWI 670
A+ G GSGK+SL++ I G + RI G + ++ YV Q + +
Sbjct: 28 ALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARL 87
Query: 671 -QTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729
T+R N+ +G M +S + +Q + + L + LSGG+KQR+
Sbjct: 88 FPHYTVRGNLRYG--MWKSMRAQ------FDQLVALLGIEHL--LDRYPGTLSGGEKQRV 137
Query: 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL---LSQKT---VLYTTHQL-EF 782
+ RA+ + ++ + D+P +++D K+ ++ L + +LY +H L E
Sbjct: 138 AIGRALLTAPELLLMDEPLASLDLPR-----KREILPYLERLRDEINIPILYVSHSLDEV 192
Query: 783 LDAADLVLVMKDGKIEQSGKYED 805
L AD V+V+++GK++ SG E+
Sbjct: 193 LRLADRVVVLENGKVKASGPLEE 215
|
Length = 352 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 3e-10
Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 4/90 (4%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
IE++NL Y P LK + + + ++G +G+GKSTL+++L +V+P+ G IL
Sbjct: 4 IEVKNLSKTY-PGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEIL 62
Query: 1268 IDGVDIS-MIG--LQDLRSRLSIIPQDPML 1294
+GV I+ + G L+ LR + +I Q L
Sbjct: 63 FNGVQITKLKGKELRKLRRDIGMIFQQFNL 92
|
Length = 258 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 3e-10
Identities = 34/110 (30%), Positives = 62/110 (56%), Gaps = 19/110 (17%)
Query: 1208 IELENLLVQYN--PTLPMVLKGITCT-FPGEKKIGVVGRTGSGKSTLIQALFRVVEP--- 1261
+E+ENL V++ ++ ++ PGE +G+VG +GSGKSTL AL ++
Sbjct: 6 LEVENLTVEFATDGGRVPAVRDVSFEVEPGEI-LGIVGESGSGKSTLALALMGLLPEGGR 64
Query: 1262 -SGGRILIDGVDISMIGLQDLRS----RLSIIPQDPMLFQGTVRTNLDPL 1306
+ G +++DG D+ + +++R R+++I QDPM T+L+P+
Sbjct: 65 ITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPM-------TSLNPV 107
|
Length = 539 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 3e-10
Identities = 42/126 (33%), Positives = 70/126 (55%), Gaps = 10/126 (7%)
Query: 1208 IELENLLVQYNPTLPMV--LKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGR 1265
IEL+N+ + T V LK ++ + P + G++GR+G+GKSTLI+ + + P+ G
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61
Query: 1266 ILIDGVDISMI---GLQDLRSRLSIIPQDPMLFQG-TVRTNLD-PLEQH--SDQEIWEVK 1318
+L+DG D++++ L+ R R+ +I Q L TV N+ PLE EI E +
Sbjct: 62 VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEI-EER 120
Query: 1319 ISKLLT 1324
+ +LL
Sbjct: 121 VLELLE 126
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 3e-10
Identities = 61/208 (29%), Positives = 97/208 (46%), Gaps = 25/208 (12%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIP-----------RISGAAIKVHGKKAYVPQSS 668
I +G + G G+GKS++ +LG I + A VPQ
Sbjct: 27 IARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFD 86
Query: 669 WIQTG-TIRENIL-FGKDMRQSF--YEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724
+ T+REN+L FG+ S E V+ +E AD ++ LSGG
Sbjct: 87 NLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVA-------LLSGG 139
Query: 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-KTVLYTTHQLEFL 783
K+R+ LARA+ ++ + I D+P + +D H HL + L LL++ KT+L TTH +E
Sbjct: 140 MKRRLTLARALINDPQLLILDEPTTGLDPH-ARHLIWERLRSLLARGKTILLTTHFMEEA 198
Query: 784 DA-ADLVLVMKDGKIEQSGKYEDLIADQ 810
+ D + V++ G+ G+ LI +Q
Sbjct: 199 ERLCDRLCVLESGRKIAEGRPHALIDEQ 226
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 4e-10
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
IE EN+ +Y V + + + ++G +GSGK+T ++ + R++EP+ G I
Sbjct: 1 IEFENVTKRYGGGKKAV-NNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIF 59
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLF 1295
IDG DI +LR ++ + Q LF
Sbjct: 60 IDGEDIREQDPVELRRKIGYVIQQIGLF 87
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 4e-10
Identities = 53/177 (29%), Positives = 83/177 (46%), Gaps = 20/177 (11%)
Query: 623 GSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV--HGKKAYVPQSSWIQTGTIRENIL 680
G+ + +CG G GKSSL ILGE+ + G + GK YVPQ ++ GT+R+ I+
Sbjct: 478 GNNLLICGPNGCGKSSLFR-ILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQII 536
Query: 681 --------FGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732
+ + E++L+ L +E +G S V + LSGG+KQRI +A
Sbjct: 537 YPDSSEDMKRRGLSDKDLEQILDNVQLTHILE--REGGWSAVQDWMDVLSGGEKQRIAMA 594
Query: 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCL-MGL----LSQKTVL--YTTHQLEF 782
R Y I D+ SAV ++++ C G+ +S + L Y + L
Sbjct: 595 RLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLWKYHEYLLYM 651
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 64.2 bits (156), Expect = 5e-10
Identities = 56/209 (26%), Positives = 98/209 (46%), Gaps = 15/209 (7%)
Query: 625 KVAVCGSVGSGKSSLLSSIL-------GEIPRISGAAIKVHGKK------AYVPQSSWIQ 671
KV V G G+GKSS+L+++ G I I + G + +PQS +
Sbjct: 1264 KVGVVGRTGAGKSSMLNALFRIVELEKGRI-MIDDCDVAKFGLTDLRRVLSIIPQSPVLF 1322
Query: 672 TGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQL 731
+GT+R NI + + E LE + I+ G + V E G N S GQ+Q + L
Sbjct: 1323 SGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSL 1382
Query: 732 ARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLV 791
ARA+ S + + D+ ++VD T + L ++ + T+L H+L + D +LV
Sbjct: 1383 ARALLRRSKILVLDEATASVDVRTDS-LIQRTIREEFKSCTMLVIAHRLNTIIDCDKILV 1441
Query: 792 MKDGKIEQSGKYEDLIADQNSELVRQMKA 820
+ G++ + ++L++ S R + +
Sbjct: 1442 LSSGQVLEYDSPQELLSRDTSAFFRMVHS 1470
|
Length = 1495 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 58.6 bits (143), Expect = 6e-10
Identities = 39/181 (21%), Positives = 70/181 (38%), Gaps = 59/181 (32%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRE 677
+ I G ++ + G G+GKS+LL I GE+ G
Sbjct: 21 LTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEG------------------------- 55
Query: 678 NILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS 737
+ +G ++ ++E+ LSGG+K R+ LA+ +
Sbjct: 56 IVTWGSTVKIGYFEQ----------------------------LSGGEKMRLALAKLLLE 87
Query: 738 NSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDA-ADLVLVMKDG 795
N ++ + D+P + +D + L L TV+ +H FLD A ++ ++DG
Sbjct: 88 NPNLLLLDEPTNHLDLESIEAL----EEALKEYPGTVILVSHDRYFLDQVATKIIELEDG 143
Query: 796 K 796
K
Sbjct: 144 K 144
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 7e-10
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
IE+ENL V Y VL+ I+ + + ++G G+GKSTL++A+ +++PS G I
Sbjct: 5 IEVENLTVSYGNRP--VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIK 62
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQ 1290
I G + + R R+ +PQ
Sbjct: 63 IFGKPVRK---RRKRLRIGYVPQ 82
|
Length = 254 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 60.2 bits (147), Expect = 7e-10
Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 5/97 (5%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
+EL+ L Y L ++ T + + ++G +G GK+TL++ + + P G IL
Sbjct: 1 LELKGLSKTYGSVR--ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEIL 58
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLFQG-TVRTNL 1303
IDG D++ G+ R + ++ QD LF TV N+
Sbjct: 59 IDGRDVT--GVPPERRNIGMVFQDYALFPHLTVAENI 93
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 7e-10
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
Query: 1209 ELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILI 1268
+EN+ Y +L ++ + I + G+ G+GK+TL + L +++ S G IL+
Sbjct: 1 RIENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILL 59
Query: 1269 DGVDISMIGLQDLRSRLSIIPQDP--MLFQGTVRTNLDP 1305
+G I ++ R + + QD LF +VR L
Sbjct: 60 NGKPIK---AKERRKSIGYVMQDVDYQLFTDSVREELLL 95
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 7e-10
Identities = 56/221 (25%), Positives = 107/221 (48%), Gaps = 32/221 (14%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------KKA-----Y 663
+++ G V + G G+GK++ I+G + SG I + K+A Y
Sbjct: 25 LEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGK-ILLDDEDITKLPMHKRARLGIGY 83
Query: 664 VPQSSWIQTG-TIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVV---GERGI 719
+PQ + I T+ +NI+ ++R+ ++ L+ +E + + +
Sbjct: 84 LPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLE-----EFHITHLRDSKAY 138
Query: 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKT--VLYTT 777
+LSGG+++R+++ARA+ +N + D+PF+ VD + Q ++ L + VL T
Sbjct: 139 SLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDI--QRIIKHLKDRGIGVLITD 196
Query: 778 HQL-EFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
H + E LD D ++ DGK+ G E+++ N+E VR+
Sbjct: 197 HNVRETLDICDRAYIISDGKVLAEGSPEEIV---NNEDVRR 234
|
Length = 243 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 8e-10
Identities = 58/211 (27%), Positives = 99/211 (46%), Gaps = 29/211 (13%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQ-------- 671
I +GSK A+ G G+GKS+LL + G I +KV G++ W++
Sbjct: 28 IPEGSKTALLGPNGAGKSTLLLHLNG-IYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQ 86
Query: 672 -------TGTIRENILFG-KDMRQSFYEEVLE--GCALNQDIEMWADGDLSVVGERGINL 721
+ T+ +++ FG +M +EV AL + MW D + +L
Sbjct: 87 DPDDQVFSSTVWDDVAFGPVNMGLD-KDEVERRVEEALKA-VRMWDFRD-----KPPYHL 139
Query: 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-KTVLYTTHQL 780
S GQK+R+ +A + + DV + D+P + +D G + L L +Q KTV+ TH +
Sbjct: 140 SYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDP-RGQETLMEILDRLHNQGKTVIVATHDV 198
Query: 781 EF-LDAADLVLVMKDGKIEQSGKYEDLIADQ 810
+ + AD V+V+K+G++ G L +
Sbjct: 199 DLAAEWADQVIVLKEGRVLAEGDKSLLTDED 229
|
Length = 274 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 8e-10
Identities = 62/223 (27%), Positives = 96/223 (43%), Gaps = 42/223 (18%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSW---IQTG--- 673
+ +G VA+ G GSGKS+L + G + +G I V G ++ W Q G
Sbjct: 30 VYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGT-ITVGGMV-LSEETVWDVRRQVGMVF 87
Query: 674 ----------TIRENILFGKDMRQSFYEEVLEGC--ALNQ-DIEMWADGDLSVVGERGIN 720
T+++++ FG + EE++E AL Q +E + + +
Sbjct: 88 QNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPH-------R 140
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAH-------TGTHLFKQCLMGLLSQKTV 773
LSGGQKQR+ +A + D+ I D+ S +D T L +Q + TV
Sbjct: 141 LSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGI------TV 194
Query: 774 LYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVR 816
L TH L+ AD V+VM G+I + G E+ I L
Sbjct: 195 LSITHDLDEAAQADRVIVMNKGEILEEGTPEE-IFKSGHMLQE 236
|
Length = 279 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 9e-10
Identities = 62/215 (28%), Positives = 97/215 (45%), Gaps = 43/215 (20%)
Query: 625 KVAVCGSVGSGKSSLLSSIL-------GEIPRISGAAIKVHG----KKAY--VPQSSWIQ 671
KV + G G+GKSS+L+++ G I I G I G +K +PQ+ +
Sbjct: 1267 KVGIVGRTGAGKSSMLNALFRIVELERGRI-LIDGCDISKFGLMDLRKVLGIIPQAPVLF 1325
Query: 672 TGTIRENILFGKDMRQSFYE-------EVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724
+GT+R N+ F E E LE L I + G + V E G N S G
Sbjct: 1326 SGTVRFNL-------DPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVG 1378
Query: 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHL-------FKQCLMGLLSQKTVLYTT 777
Q+Q + LARA+ S + + D+ +AVD T + FK C M L
Sbjct: 1379 QRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTM--------LIIA 1430
Query: 778 HQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNS 812
H+L + D +LV+ G++ + E+L++++ S
Sbjct: 1431 HRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGS 1465
|
Length = 1622 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 60.2 bits (147), Expect = 9e-10
Identities = 61/221 (27%), Positives = 104/221 (47%), Gaps = 42/221 (19%)
Query: 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI---------KVHGKKA-----YVPQS 667
+G V + G G+GK++ I+G + SG + +H K+A Y+PQ
Sbjct: 25 QGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMH-KRARLGIGYLPQE 83
Query: 668 SWIQTG-TIRENIL-------FGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719
+ I T+ ENIL K R+ EE+LE I + +
Sbjct: 84 ASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLE----EFHIT-------HLRKSKAS 132
Query: 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKT--VLYTT 777
+LSGG+++R+++ARA+ +N + D+PF+ VD + Q ++ +L + VL T
Sbjct: 133 SLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDI--QKIIKILKDRGIGVLITD 190
Query: 778 HQL-EFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
H + E L D ++ +GK+ G E++ A+ ELVR+
Sbjct: 191 HNVRETLSITDRAYIIYEGKVLAEGTPEEIAAN---ELVRK 228
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 1e-09
Identities = 37/144 (25%), Positives = 70/144 (48%), Gaps = 10/144 (6%)
Query: 1177 ERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEK 1236
E ++ F P P + IE E+L + +P + + T P +
Sbjct: 322 ESLVTFLETPLAHP---QQGEKELASNDPVTIEAEDLEI-LSPDGKTLAGPLNFTLPAGQ 377
Query: 1237 KIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQ 1296
+I +VG +G+GK++L+ AL + P G + I+G+++ + + R LS + Q+P L
Sbjct: 378 RIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPH 436
Query: 1297 GTVRTNL---DPLEQHSDQEIWEV 1317
GT+R N+ +P SD+++ +
Sbjct: 437 GTLRDNVLLGNP--DASDEQLQQA 458
|
Length = 588 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 1e-09
Identities = 65/228 (28%), Positives = 110/228 (48%), Gaps = 35/228 (15%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRE 677
+ I +G V + G GSGKS+LL I ++ I+ + V G K P+ + IR+
Sbjct: 22 LNIDQGEVVVIIGPSGSGKSTLLRCI-NKLEEITSGDLIVDGLKVNDPK---VDERLIRQ 77
Query: 678 N--ILFGKDMRQSFY--------EEVLEG-----CALNQDIEMWADGDLSVVG--ERG-- 718
++F Q FY E V+ G A ++ E A L+ VG ER
Sbjct: 78 EAGMVF-----QQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHH 132
Query: 719 --INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--TVL 774
LSGGQ+QR+ +ARA+ + +FD+P SA+D + K +M L+++ T++
Sbjct: 133 YPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLK--VMQDLAEEGMTMV 190
Query: 775 YTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAH 821
TH++ F A ++ + G+I + G + LI + S+ +++ H
Sbjct: 191 IVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNPPSQRLQEFLQH 238
|
Length = 240 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 1e-09
Identities = 45/167 (26%), Positives = 76/167 (45%), Gaps = 18/167 (10%)
Query: 623 GSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILF- 681
G + V G GSGK++LL + G P ++G + Q +I +L+
Sbjct: 26 GEALQVTGPNGSGKTTLLRILAGLSPPLAGRVL-------LNGGPLDFQRDSIARGLLYL 78
Query: 682 ----GKDMRQSFYEEVLEGCALNQDIEMW---ADGDLSVVGERGIN-LSGGQKQRIQLAR 733
G S E + A + D ++ A L+ +R + LS GQ++R+ LAR
Sbjct: 79 GHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALAR 138
Query: 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-KTVLYTTHQ 779
+ S ++I D+P +A+D G F + + G ++ V+ TTHQ
Sbjct: 139 LLLSGRPLWILDEPTTALDK-AGVARFAEAMAGHCARGGMVVLTTHQ 184
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 1e-09
Identities = 39/101 (38%), Positives = 57/101 (56%), Gaps = 9/101 (8%)
Query: 1208 IELENLLVQYNPTLPMVLKGIT-CTFPGEKK--IGVVGRTGSGKSTLIQALFRVVEPSGG 1264
I+ EN+ Y+P PM KG+ +F E+ + +VG TGSGKSTL+Q +++PS G
Sbjct: 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSG 62
Query: 1265 RILIDGVDI----SMIGLQDLRSRLSIIPQDP--MLFQGTV 1299
I I G I L+ LR ++S++ Q P LF+ TV
Sbjct: 63 TITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTV 103
|
Length = 287 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 2e-09
Identities = 35/117 (29%), Positives = 59/117 (50%), Gaps = 7/117 (5%)
Query: 1200 PEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVV 1259
IE+ + + + +L G+ P + + ++G +GSGKSTL++ + ++
Sbjct: 1 MSASPEPLIEVRGVTKSFGDRV--ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLL 58
Query: 1260 EPSGGRILIDGVDI---SMIGLQDLRSRLSIIPQDPMLFQG-TVRTNLD-PLEQHSD 1311
P G ILIDG DI S L ++R R+ ++ Q LF TV N+ PL +H+
Sbjct: 59 RPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTK 115
|
Length = 263 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 2e-09
Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 12/92 (13%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1266
IE++NL + VLKGI T GE + ++G +GSGKSTL++ + + EP G I
Sbjct: 1 IEIKNLHKSFGDFH--VLKGIDLTVKKGEV-VVIIGPSGSGKSTLLRCINLLEEPDSGTI 57
Query: 1267 LIDGVDI--SMIGLQDLRSRLSIIPQDPMLFQ 1296
+IDG+ + + +LR ++ M+FQ
Sbjct: 58 IIDGLKLTDDKKNINELRQKVG------MVFQ 83
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 2e-09
Identities = 41/147 (27%), Positives = 63/147 (42%), Gaps = 26/147 (17%)
Query: 623 GSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVP----QSSWI--QTG--- 673
G + + G GSGK++LL I G +P +G IK+ G P ++ +
Sbjct: 28 GEALVLTGPNGSGKTTLLRLIAGLLPPAAGT-IKLDGGDIDDPDVAEACHYLGHRNAMKP 86
Query: 674 --TIRENILFGKDMR---QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728
T+ EN+ F + LE L + L LS GQK+R
Sbjct: 87 ALTVAENLEFWAAFLGGEELDIAAALEAVGL-APLA-----HL-----PFGYLSAGQKRR 135
Query: 729 IQLARAVYSNSDVYIFDDPFSAVDAHT 755
+ LAR + SN ++I D+P +A+DA
Sbjct: 136 VALARLLVSNRPIWILDEPTAALDAAA 162
|
Length = 207 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 2e-09
Identities = 61/218 (27%), Positives = 107/218 (49%), Gaps = 27/218 (12%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIREN 678
K KG VA+ G G+GKS+L G I + + + + G+ + S ++ +R+
Sbjct: 24 KAEKGEMVALLGPNGAGKSTLFLHFNG-ILKPTSGEVLIKGEPIKYDKKSLLE---VRKT 79
Query: 679 --ILFGKDMRQSFYEEVLEGCA---LN-----QDIEMWADGDLSVVGERGI------NLS 722
I+F Q F V E A LN +++E L VG G +LS
Sbjct: 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLS 139
Query: 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--TVLYTTHQL 780
GGQK+R+ +A + ++ + D+P S +D + + K L+ L+++ T++ +TH +
Sbjct: 140 GGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMK--LLYDLNKEGITIIISTHDV 197
Query: 781 EFLDA-ADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
+ + AD V VM DGKI + G +++ +D E +R+
Sbjct: 198 DLVPVYADKVYVMSDGKIIKEGTPKEVFSD--IETIRK 233
|
Length = 275 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.6 bits (144), Expect = 2e-09
Identities = 62/229 (27%), Positives = 101/229 (44%), Gaps = 38/229 (16%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSIL---GEIP--RISGAAIKVHGKKAYVP------- 665
MKI K A+ G G GK++LL SI IP R+ G I G+ Y P
Sbjct: 24 MKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGK-IYFKGQDIYDPQLDVTEY 82
Query: 666 --------QSSWIQTGTIRENILFG--------KDMRQSFYEEVLEGCALNQDIEMWADG 709
Q +I +N+ FG K EE L+ AL +++
Sbjct: 83 RKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVK----- 137
Query: 710 DLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS 769
S + + G LSGGQ+QR+ +ARA+ +V + D+P SA+D T ++ L L
Sbjct: 138 --SELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDP-IATQRIEKLLEELSE 194
Query: 770 QKTVLYTTHQL-EFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
T++ TH + + + AD + M G++ + G +++ ++L +
Sbjct: 195 NYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVERPKNKLTEE 243
|
Length = 250 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 2e-09
Identities = 63/230 (27%), Positives = 102/230 (44%), Gaps = 44/230 (19%)
Query: 622 KGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHGKKAYVPQSSWIQTGTIR 676
+G + + G GSGKS+L ++L IP R G I +K P +Q
Sbjct: 312 RGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQ----- 366
Query: 677 ENILFGK-----DMRQSFYEEVLEGCALNQDIEMWADGDLSVVG---ERGIN-------- 720
++F R + + + EG +++ A+ D V+ E G++
Sbjct: 367 --VVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYP 424
Query: 721 --LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQC----LMGLLSQK--- 771
SGGQ+QRI +ARA+ ++ + D+P SA+D Q L+ L QK
Sbjct: 425 HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSV------QAQVLDLLRDLQQKHGL 478
Query: 772 TVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKA 820
+ L+ +H L + A V+VM+DGKI + G E + A+ E R + A
Sbjct: 479 SYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFANPQHEYTRALLA 528
|
Length = 534 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.6 bits (148), Expect = 3e-09
Identities = 50/202 (24%), Positives = 86/202 (42%), Gaps = 40/202 (19%)
Query: 626 VAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK--------------AYVP----QS 667
+ + G VG+G++ L ++ G P SG I + GK AYVP
Sbjct: 288 LGIAGLVGAGRTELARALFGARPASSGE-ILLDGKPVRIRSPRDAIKAGIAYVPEDRKSE 346
Query: 668 SWIQTGTIRENILF---GKDMRQSFY---EEVLEGCALNQDIEMWADGDLSVVGERGINL 721
+ +I ENI + R+ +E + + + +G L
Sbjct: 347 GLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIG----TL 402
Query: 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-----KTVLYT 776
SGG +Q++ LAR + ++ V I D+P +D G K + L+ + K +L
Sbjct: 403 SGGNQQKVVLARWLATDPKVLILDEPTRGID--VGA---KAEIYRLIRELAAEGKAILMI 457
Query: 777 THQL-EFLDAADLVLVMKDGKI 797
+ +L E L +D +LVM++G+I
Sbjct: 458 SSELPELLGLSDRILVMREGRI 479
|
Length = 500 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 3e-09
Identities = 42/193 (21%), Positives = 80/193 (41%), Gaps = 40/193 (20%)
Query: 633 GSGKSSLLSSILGEIPRISGAAIKVHGKKA------------YVPQSSWIQTGTIRENIL 680
G+GK++L+ + P SG I++ G+ Y+PQ
Sbjct: 35 GAGKTTLMRILATLTPPSSGT-IRIDGQDVLKQPQKLRRRIGYLPQ-----------EFG 82
Query: 681 FGKDMRQSFYEEVLEGCALNQDI----------EMWADGDLSVVGERGIN-LSGGQKQRI 729
+ E L+ A + I E+ +L ++ I LSGG ++R+
Sbjct: 83 VYPNFTV---REFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRV 139
Query: 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADL 788
+A+A+ + + I D+P + +D F+ L L + V+ +TH +E +++ +
Sbjct: 140 GIAQALVGDPSILIVDEPTAGLDPEE-RIRFRNLLSELGEDRIVILSTHIVEDVESLCNQ 198
Query: 789 VLVMKDGKIEQSG 801
V V+ GK+ G
Sbjct: 199 VAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 3e-09
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQL 780
LSGGQK+R+ +A + ++ IFD+P + +D + + L + KTV TH +
Sbjct: 177 LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTM 236
Query: 781 E-FLDAADLVLVMKDGKIEQSGKYEDLIADQ 810
E L+ AD V+VM GKI ++G ++ DQ
Sbjct: 237 EHVLEVADEVIVMDKGKILKTGTPYEIFTDQ 267
|
Length = 320 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 3e-09
Identities = 48/193 (24%), Positives = 80/193 (41%), Gaps = 43/193 (22%)
Query: 623 GSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK------KAYVPQSSWI--QTG- 673
G + + G G+GK++LL + G + R + G+ ++Y ++ Q G
Sbjct: 28 GEALQITGPNGAGKTTLLRILAG-LLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGI 86
Query: 674 ----TIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI------NLSG 723
T EN+ F + S + AL Q VG G+ LS
Sbjct: 87 KTELTALENLHFWQRFHGSGNAATIWE-ALAQ------------VGLAGLEDLPVGQLSA 133
Query: 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKT-----VLYTTH 778
GQ++R+ LAR S + ++I D+PF+A+D L L++ VL TTH
Sbjct: 134 GQQRRVALARLWLSPAPLWILDEPFTALDKEG-----VALLTALMAAHAAQGGIVLLTTH 188
Query: 779 QLEFLDAADLVLV 791
Q + +A + +
Sbjct: 189 QPLPIASAQIRRL 201
|
Length = 209 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.6 bits (143), Expect = 3e-09
Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 9/122 (7%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
+E+ENL Y L+G++ + + ++GR G+GK+TL++ + +V P GRI+
Sbjct: 4 LEVENLSAGYGKIQ--ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRII 61
Query: 1268 IDGVDISMIGLQ-DLRSRLSI--IPQDPMLFQG-TVRTNLD-PLEQHSDQEIWEVKISKL 1322
DG DI+ GL R+RL I +P+ +F TV NL D+E E + ++
Sbjct: 62 FDGEDIT--GLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEV 119
Query: 1323 LT 1324
Sbjct: 120 YE 121
|
Length = 237 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 3e-09
Identities = 68/257 (26%), Positives = 106/257 (41%), Gaps = 51/257 (19%)
Query: 593 IEAGEYAWDAREEN-FKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSI-----LG 645
+GE +AR+ N F L D M I + A+ G G GKS+ L I L
Sbjct: 33 ASSGETVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLI 92
Query: 646 EIPRISGAAIKVHGKKAY---------------VPQSSWIQTGTIRENILFGKDMR---- 686
+ R+ G + GK Y V Q +I +N+ +G ++
Sbjct: 93 DAARVEGE-LTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDG 151
Query: 687 --QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIF 744
EE L AL +++ D G++LSGGQ+QR+ +ARA+ + +V +
Sbjct: 152 DIDERVEESLRRAALWDEVKDQLD-------SSGLDLSGGQQQRLCIARAIAPDPEVILM 204
Query: 745 DDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLE-----------FLDAADLVLVMK 793
D+P SA+D T + + L + TV+ TH ++ FL +LV
Sbjct: 205 DEPASALDP-VATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDD 263
Query: 794 DGKI---EQSGKYEDLI 807
KI +S + ED I
Sbjct: 264 TDKIFENPESQRVEDYI 280
|
Length = 285 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 4e-09
Identities = 34/85 (40%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 1233 PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG--LQDLRSRLSIIPQ 1290
GE +G+VG +GSGKSTL + L ++ PS G I+ DG D+ + G L+ LR R+ ++ Q
Sbjct: 316 EGET-LGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQ 374
Query: 1291 DP---MLFQGTVRTNL-DPLEQHSD 1311
DP + + TV L +PL H
Sbjct: 375 DPYSSLNPRMTVGDILAEPLRIHGG 399
|
Length = 539 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 4e-09
Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1266
+ ENL V Y +L ++ + P K ++G G GKSTL++ R++ P G +
Sbjct: 2 TLRTENLTVGYGTK--RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTV 59
Query: 1267 LIDGVDISMIGLQDLRSRLSIIPQDPMLFQG-TVR 1300
+ ISM+ + L RL+++PQ + +G TVR
Sbjct: 60 FLGDKPISMLSSRQLARRLALLPQHHLTPEGITVR 94
|
Length = 255 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 4e-09
Identities = 65/225 (28%), Positives = 108/225 (48%), Gaps = 53/225 (23%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK------AYVPQSSWIQTG 673
+ +G +VA+ G G+GKS+LL+ I G + SG+ + ++G+ + P S Q
Sbjct: 22 VERGERVAILGPSGAGKSTLLNLIAGFLTPASGS-LTLNGQDHTTTPPSRRPVSMLFQEN 80
Query: 674 ------TIRENILFGKDMRQSFYEEVLEGCALN-------QDI--EMWADGDLS-VVGER 717
T+ +NI G + G LN I +M + L+ + G+
Sbjct: 81 NLFSHLTVAQNIGLGLN----------PGLKLNAAQREKLHAIARQMGIEDLLARLPGQ- 129
Query: 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS------QK 771
LSGGQ+QR+ LAR + + + D+PFSA+D +Q ++ L+S Q
Sbjct: 130 ---LSGGQRQRVALARCLVREQPILLLDEPFSALDP-----ALRQEMLTLVSQVCQERQL 181
Query: 772 TVLYTTHQLEFLDAADLV---LVMKDGKIEQSGKYEDLIADQNSE 813
T+L +H LE DAA + LV+ DG+I G ++L++ + S
Sbjct: 182 TLLMVSHSLE--DAARIAPRSLVVADGRIAWDGPTDELLSGKASA 224
|
Length = 232 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 4e-09
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 1208 IELENLLVQYNPTLPM---VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGG 1264
I L N + P+ L G++ + V+G G+GKSTL+ A+ ++P+ G
Sbjct: 2 ISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSG 61
Query: 1265 RILIDGVDISMIGLQDLRSRLSIIPQDPML 1294
+ILIDGVD++ + + L+ + QDP+
Sbjct: 62 QILIDGVDVTKKSVAKRANLLARVFQDPLA 91
|
Length = 263 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 4e-09
Identities = 61/233 (26%), Positives = 94/233 (40%), Gaps = 61/233 (26%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIP----RISGAAI----------------KVH 658
++ KG + + G GSGKS L +I+G +P RI G I K+
Sbjct: 27 ELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIR 86
Query: 659 GKK-AYVPQSSWIQTG-----TIRENIL------FGKDMRQSFYEEVLEGCALNQDIEMW 706
GK+ A + Q T TI + I ++ E +E L
Sbjct: 87 GKEIAMIFQDP--MTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIE--LLEL----- 137
Query: 707 ADGDLSVVG----ERGIN-----LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGT 757
VG ER + LSGG +QR+ +A A+ N + I D+P +A+D
Sbjct: 138 -------VGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQA 190
Query: 758 HLFKQCLMGLLSQK--TVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDLI 807
+ L L +K ++ TH L + + AD V VM G+I + G E++
Sbjct: 191 QILDL-LKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIF 242
|
Length = 316 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (145), Expect = 4e-09
Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 7/92 (7%)
Query: 1208 IELENLLVQYNPTLPMV--LKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGR 1265
IEL+N+ + + L ++ P + GV+G +G+GKSTLI+ + + P+ GR
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 1266 ILIDGVDISMIGLQDLRS-RLSIIPQDPMLFQ 1296
+L+DG D++ + ++LR R I M+FQ
Sbjct: 62 VLVDGQDLTALSEKELRKARRQI----GMIFQ 89
|
Length = 343 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 4e-09
Identities = 64/241 (26%), Positives = 105/241 (43%), Gaps = 44/241 (18%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK--------------AYV 664
+ KG A+ G G+GKS+L+ + G SG I+V GK+ V
Sbjct: 26 SVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGE-IRVDGKEVRIKSPRDAIRLGIGMV 84
Query: 665 PQS-SWIQTGTIRENILFGK--------DMRQSFYEEVLEGCA-LNQDIEMWAD-GDLSV 713
Q + T T+ ENI+ G D RQ+ + E ++ A DLSV
Sbjct: 85 HQHFMLVPTLTVAENIILGLEPSKGGLIDRRQA-RARIKELSERYGLPVDPDAKVADLSV 143
Query: 714 VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--K 771
G++QR+++ +A+Y + + I D+P + + LF+ ++ L+ K
Sbjct: 144 ----------GEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFE--ILRRLAAEGK 191
Query: 772 TVLYTTHQL-EFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNP 830
T+++ TH+L E + AD V V++ GK+ G + + EL M L V P
Sbjct: 192 TIIFITHKLKEVMAIADRVTVLRRGKV--VGTVDPVAETTEEELAELMVGREVVLRVVKP 249
Query: 831 P 831
P
Sbjct: 250 P 250
|
Length = 501 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 6e-09
Identities = 57/210 (27%), Positives = 98/210 (46%), Gaps = 20/210 (9%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK--AY-----------VP 665
+I KV + G GSGKS+LL + + + + G I+V+G++ AY +P
Sbjct: 1332 RIAPREKVGIVGRTGSGKSTLLLTFM-RMVEVCGGEIRVNGREIGAYGLRELRRQFSMIP 1390
Query: 666 QSSWIQTGTIRENILFGKDMRQSFYEEV---LEGCALNQDIEMWADGDLSVVGERGINLS 722
Q + GT+R+N+ ++ EV LE L + + ++G S V E G N S
Sbjct: 1391 QDPVLFDGTVRQNV---DPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYS 1447
Query: 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEF 782
GQ+Q + +ARA+ +I D +A + +M S TV+ H+L
Sbjct: 1448 VGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHT 1507
Query: 783 LDAADLVLVMKDGKIEQSGKYEDLIADQNS 812
+ D ++VM G + + G +L+ ++ S
Sbjct: 1508 VAQYDKIIVMDHGAVAEMGSPRELVMNRQS 1537
|
Length = 1560 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 6e-09
Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
IE EN+ +Y + + T + + ++G +GSGK+T ++ + R++EP+ G IL
Sbjct: 2 IEFENVSKRYGNK--KAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEIL 59
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLF 1295
IDG DIS + +LR ++ + Q LF
Sbjct: 60 IDGEDISDLDPVELRRKIGYVIQQIGLF 87
|
Length = 309 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.5 bits (140), Expect = 6e-09
Identities = 61/236 (25%), Positives = 97/236 (41%), Gaps = 76/236 (32%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK--------------AY 663
+++ +G VA+ G G+GK++LL +I+G + SG I G+ AY
Sbjct: 24 LEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGR-IIFDGEDITGLPPHERARLGIAY 82
Query: 664 VPQSSWI-QTGTIRENILFG------KDMRQSFYEEVLE-----GCALNQDIEMWADGDL 711
VP+ I T+ EN+L G K+ ++ EEV E NQ
Sbjct: 83 VPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQ---------- 132
Query: 712 SVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL---- 767
R LSGG++Q + +ARA+ S + + D+P GL
Sbjct: 133 -----RAGTLSGGEQQMLAIARALMSRPKLLLLDEPS----------------EGLAPKI 171
Query: 768 ----------LSQK---TVLYTTHQLEF-LDAADLVLVMKDGKIEQSGKYEDLIAD 809
L ++ T+L F L+ AD V+++G+I SG +L+AD
Sbjct: 172 VEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227
|
Length = 237 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 7e-09
Identities = 56/251 (22%), Positives = 103/251 (41%), Gaps = 41/251 (16%)
Query: 607 FKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-AYVP 665
+ ++ L G ++ + G G+GKS+LL + GE+ SG + G + Y+
Sbjct: 19 LENVSLTLNP------GERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLS 72
Query: 666 QSSWIQTG-TIRENILFG---------------KDMRQSFYEEVLEGCALNQDIEMW-AD 708
Q + T+ + ++ G + E + E AL ++++ W +
Sbjct: 73 QEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLE 132
Query: 709 GDLSVVGER-GI--------NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHL 759
G +LSGG ++R+ LARA+ D+ + D+P + +D + L
Sbjct: 133 ARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWL 192
Query: 760 FKQCLMGLLSQK-TVLYTTHQLEFLDA-ADLVLVMKDGKI-EQSGKYEDLIADQNSELVR 816
L TV+ +H FLD A +L + GK+ G Y + +Q +E +R
Sbjct: 193 EDY----LKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYSSYL-EQKAERLR 247
Query: 817 QMKAHRKSLDQ 827
Q A + +
Sbjct: 248 QEAAAYEKQQK 258
|
Length = 530 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 7e-09
Identities = 37/89 (41%), Positives = 49/89 (55%), Gaps = 14/89 (15%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK-------TV 773
LSGGQ+QR+ + RA+ V++FD+P S +DA L Q M L Q+ T
Sbjct: 135 LSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDA----KLRVQ--MRLEIQRLHRRLKTTS 188
Query: 774 LYTTH-QLEFLDAADLVLVMKDGKIEQSG 801
LY TH Q+E + AD V+VM G EQ G
Sbjct: 189 LYVTHDQVEAMTLADRVVVMNGGVAEQIG 217
|
Length = 356 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 8e-09
Identities = 60/201 (29%), Positives = 97/201 (48%), Gaps = 31/201 (15%)
Query: 630 GSVGSGKSSLLSSILG-EIP-----RISGAAIKVHGKKA-----YVPQSSWIQTG-TIRE 677
G G+GK++ L +LG P + G + + A VPQ + T+RE
Sbjct: 40 GPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRE 99
Query: 678 NIL-FGK--DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734
N+L FG+ + + ++ +E AD VGE LSGG K+R+ LARA
Sbjct: 100 NLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAK---VGE----LSGGMKRRLTLARA 152
Query: 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-KTVLYTTHQLEFLDAA----DLV 789
+ ++ DV + D+P + +D HL + L LL++ KT+L TTH F++ A D +
Sbjct: 153 LVNDPDVLVLDEPTTGLDPQ-ARHLMWERLRSLLARGKTILLTTH---FMEEAERLCDRL 208
Query: 790 LVMKDGKIEQSGKYEDLIADQ 810
V+++G+ G LI +
Sbjct: 209 CVIEEGRKIAEGAPHALIESE 229
|
Length = 306 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 8e-09
Identities = 58/218 (26%), Positives = 98/218 (44%), Gaps = 27/218 (12%)
Query: 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK----KAYVPQSSWIQTGTIRE 677
+G +A+ G GSGKS+L + G I SG I ++ Y +S I+
Sbjct: 38 EGQTLAIIGENGSGKSTLAKMLAGMIEPTSGE-ILINDHPLHFGDYSFRSKRIRMIFQDP 96
Query: 678 NILFGKDMRQSFYEEVLEG-CALNQDIEMWADGD-----LSVVG------ERGIN-LSGG 724
N +R ++L+ LN D+E L +VG + L+ G
Sbjct: 97 NTSLNPRLRIG---QILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPG 153
Query: 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK---TVLYTTHQLE 781
QKQR+ LARA+ + I D+ +++D + L LM L +K + +Y T +
Sbjct: 154 QKQRVALARALILRPKIIIADEALASLDMSMRSQLIN--LMLELQEKQGISYIYVTQHIG 211
Query: 782 FLD-AADLVLVMKDGKIEQSGKYEDLIADQNSELVRQM 818
+ +D VLVM +G++ + G D++A EL +++
Sbjct: 212 MIKHISDQVLVMHEGEVVERGSTADVLASPLHELTKRL 249
|
Length = 267 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 9e-09
Identities = 36/122 (29%), Positives = 65/122 (53%), Gaps = 10/122 (8%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
+EL+N+ + VLK + + + ++G +G GKSTL++ + + EP+ G IL
Sbjct: 4 LELKNVRKSFGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEIL 61
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLF-QGTVRTNLD-PLE--QHSDQEI-WEVK-ISK 1321
IDG D++ + + R ++++ Q+ L+ TV N+ L+ EI VK ++K
Sbjct: 62 IDGRDVTDLPPEK-R-GIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAK 119
Query: 1322 LL 1323
LL
Sbjct: 120 LL 121
|
Length = 338 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 1e-08
Identities = 37/132 (28%), Positives = 64/132 (48%), Gaps = 7/132 (5%)
Query: 1182 FTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVV 1241
N PS P + P PE G + +EN+ + L+GI+ + + + ++
Sbjct: 298 LANYPSRDPAM---PLPEPE----GHLSVENVTIVPPGGKKPTLRGISFSLQAGEALAII 350
Query: 1242 GRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRT 1301
G +GSGKSTL + + + P+ G + +DG D+ + + +PQD LF GTV
Sbjct: 351 GPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAE 410
Query: 1302 NLDPLEQHSDQE 1313
N+ +++D E
Sbjct: 411 NIARFGENADPE 422
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 1e-08
Identities = 35/116 (30%), Positives = 59/116 (50%), Gaps = 4/116 (3%)
Query: 1198 PSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFR 1257
P+P+ G + +E L +LKGI+ + +G++G +GSGKSTL + L
Sbjct: 329 PAPQ----GALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVG 384
Query: 1258 VVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQE 1313
+ P+ G + +DG D+ + L + +PQD LF GT+ N+ + +D E
Sbjct: 385 IWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPE 440
|
Length = 580 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 56.7 bits (138), Expect = 1e-08
Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 2/97 (2%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
+++ NL Y + ++ + G++G G+GK+T ++ L + P+ G
Sbjct: 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY 60
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLFQG-TVRTNL 1303
I+G I + R L PQ LF TVR +L
Sbjct: 61 INGYSIRT-DRKAARQSLGYCPQFDALFDELTVREHL 96
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 1e-08
Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 12/126 (9%)
Query: 1208 IELENLLVQYN--PTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGG 1264
+ + NL + Y L ++ GE +G+VG +GSGKSTL + L + +PS G
Sbjct: 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGET-LGIVGESGSGKSTLARLLAGLEKPSSG 62
Query: 1265 RILIDGVDI-SMIGLQDLRSRLSIIPQDPML----FQGTVRTNL-DPLEQHSDQEIWEVK 1318
IL+DG + + + ++ QDP + TV L +PL H + + +
Sbjct: 63 SILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRR-TVGRILSEPLRPHGLSKSQQ-R 120
Query: 1319 ISKLLT 1324
I++LL
Sbjct: 121 IAELLD 126
|
Length = 252 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 1e-08
Identities = 54/224 (24%), Positives = 96/224 (42%), Gaps = 51/224 (22%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSI-----LGEIPRISGAAIKVHGKKAYVPQSSWIQ- 671
+ I K A+ G G GKS+LL + L R+ G + + GK Y P+ ++
Sbjct: 28 LDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGE-VLLDGKNIYDPKVDVVEL 86
Query: 672 --------------TGTIRENILFG--------KDMRQSFYEEVLEGCALNQDIEMWADG 709
+I +N+ +G K++ + E L+ AL W +
Sbjct: 87 RRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDE-IVESSLKKAAL------WDE- 138
Query: 710 DLSVVGER----GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLM 765
V +R + LSGGQ+QR+ +ARA+ +V + D+P SA+D T ++ +
Sbjct: 139 ----VKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDP-ISTLKIEELIT 193
Query: 766 GLLSQKTVLYTTHQLEFLDAA---DLVLVMKDGKIEQSGKYEDL 806
L + T++ TH ++ AA D G++ + G + +
Sbjct: 194 ELKKKYTIVIVTHNMQ--QAARVSDYTAFFYLGELVEFGPTDKI 235
|
Length = 253 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 1e-08
Identities = 36/96 (37%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
+++E L Y LKGI + ++G G+GKSTL Q L +++PS GRIL
Sbjct: 6 LKVEELNYNY-SDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRIL 64
Query: 1268 IDG--VDISMIGLQDLRSRLSIIPQDP--MLFQGTV 1299
DG +D S GL LR + ++ QDP LF +V
Sbjct: 65 FDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASV 100
|
Length = 283 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 55.9 bits (136), Expect = 1e-08
Identities = 49/183 (26%), Positives = 81/183 (44%), Gaps = 40/183 (21%)
Query: 626 VAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFG--- 682
V + G VG+G++ L ++ G P SG I + GK + + R+ I G
Sbjct: 29 VGIAGLVGNGQTELAEALFGLRPPASGE-ITLDGKP--------VTRRSPRDAIRAGIAY 79
Query: 683 --KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSD 740
+D R+ EG L+ + ++++ LSGG +Q++ LAR + +
Sbjct: 80 VPED-RKR------EGLVLDLSVAE----NIAL----SSLLSGGNQQKVVLARWLARDPR 124
Query: 741 VYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-----KTVLYTTHQL-EFLDAADLVLVMKD 794
V I D+P VD K + L+ + K VL + +L E L D +LVM +
Sbjct: 125 VLILDEPTRGVDVGA-----KAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYE 179
Query: 795 GKI 797
G+I
Sbjct: 180 GRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 1e-08
Identities = 54/190 (28%), Positives = 85/190 (44%), Gaps = 33/190 (17%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSI-----LGEIPRISGAAIKVHGKKAYVPQSSWIQT 672
M+I K A G G GKS+LL L + RI G I++ G+ Y + +
Sbjct: 46 MRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEG-EIRLDGQNIYDKK---VDV 101
Query: 673 GTIRENI--LFGKD--MRQSFYEEVLEGCALNQDIEMWADGDLSV--------------- 713
+R + +F + +S YE V+ G L Q I D +V
Sbjct: 102 AELRRRVGMVFQRPNPFPKSIYENVVYGLRL-QGINNRRVLDEAVERSLRGAALWDEVKD 160
Query: 714 -VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK- 771
+ E LSGGQ+QR+ +ARA+ +V + D+P SA+D + L + L+ L K
Sbjct: 161 RLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPIST--LKIEELITELKSKY 218
Query: 772 TVLYTTHQLE 781
T++ TH ++
Sbjct: 219 TIVIVTHNMQ 228
|
Length = 272 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 1e-08
Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
I +EN+ Y +VL ++ P ++G G+GKSTL+ + R+++ G I
Sbjct: 2 ITIENVSKSYGTK--VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEIT 59
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQD 1291
IDG++++ ++L +LSI+ Q+
Sbjct: 60 IDGLELTSTPSKELAKKLSILKQE 83
|
Length = 252 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 2e-08
Identities = 32/104 (30%), Positives = 54/104 (51%), Gaps = 9/104 (8%)
Query: 1208 IELENLLVQYN--PTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGG 1264
IEL+N+ Y LK + GE + +VG +GSGKSTL+ L + +P+ G
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEF-VAIVGPSGSGKSTLLNLLGGLDKPTSG 60
Query: 1265 RILIDGVDISMIGLQDL----RSRLSIIPQDPMLFQG-TVRTNL 1303
+LI+G D++ + ++L R ++ + Q+ L TV N+
Sbjct: 61 EVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENV 104
|
Length = 226 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 2e-08
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 1249 STLIQALFRVVEPSGGRILIDGVDI-SMIGLQDLRSRLSIIPQDPMLF-QGTVRTNLDP- 1305
STL++ + +++P+ G IL+DG D + + LR R+ ++ QDP LF + TVR NL
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 1306 -LEQHSDQEIWEV 1317
++ +D E
Sbjct: 61 LRDKEADARAEEA 73
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 2e-08
Identities = 39/122 (31%), Positives = 67/122 (54%), Gaps = 10/122 (8%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1266
+ ENL +Y V+ G++ + GE +G++G G+GK+T + +V+P G+I
Sbjct: 1 LRAENLSKRYGKRK--VVNGVSLSVKQGEI-VGLLGPNGAGKTTTFYMIVGLVKPDSGKI 57
Query: 1267 LIDGVDISMIGLQDLRSRLSII--PQDPMLFQG-TVRTNLD-PLEQHS-DQEIWEVKISK 1321
L+DG DI+ + + R+RL I PQ+ +F+ TV N+ LE ++ E K+ +
Sbjct: 58 LLDGQDITKLPM-HKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEE 116
Query: 1322 LL 1323
LL
Sbjct: 117 LL 118
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 2e-08
Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 27/132 (20%)
Query: 1208 IELENLLVQY---NPTLPMVLKGITCT-FPGEKKIGVVGRTGSGKSTLIQALFRVVEP-- 1261
+E++NL V + + + G++ GE +G+VG +GSGKS L +A+ ++
Sbjct: 2 LEVKNLSVSFPTDAGVVK-AVDGVSFELKKGEI-LGIVGESGSGKSVLAKAIMGLLPKPN 59
Query: 1262 ---SGGRILIDGVDISMIG---LQDLR-SRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEI 1314
GG IL DG D+ + L+ +R +++I QDPM T+L+P+ DQ I
Sbjct: 60 ARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPM-------TSLNPVMTIGDQ-I 111
Query: 1315 WEVKISKLLTHK 1326
EV L H
Sbjct: 112 AEV----LRLHG 119
|
Length = 316 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.5 bits (140), Expect = 2e-08
Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 12/106 (11%)
Query: 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTH----LFKQC--LMGLLSQKTV 773
LSGGQKQR+ +ARA+ SN V + D+ SA+D T T L K +GL T+
Sbjct: 140 QLSGGQKQRVAIARALASNPKVLLCDEATSALDPAT-TRSILELLKDINRELGL----TI 194
Query: 774 LYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIADQNSELVRQM 818
+ TH+++ + D V V+ G++ + G ++ + L R+
Sbjct: 195 VLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSHPKHPLTREF 240
|
Length = 343 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 2e-08
Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
IE N+ Y L GI + + + +VG +G+GKSTL++ +++ P+ G I
Sbjct: 1 IEFINVTKTYPNGTA-ALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIR 59
Query: 1268 IDGVDISMIGLQD-----LRSRLSIIPQDPML 1294
++G D+S L+ LR ++ ++ QD L
Sbjct: 60 VNGQDVS--DLRGRAIPYLRRKIGVVFQDFRL 89
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 2e-08
Identities = 45/196 (22%), Positives = 86/196 (43%), Gaps = 23/196 (11%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-------------AYV 664
+ + G +A+ G G GKS+LL + I SG + G+ +Y
Sbjct: 24 LSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGT-LLFEGEDVSTLKPEAYRQQVSYC 82
Query: 665 PQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724
Q+ + T+ +N++F +R + A + +A D S++ + LSGG
Sbjct: 83 AQTPALFGDTVEDNLIFPWQIRNRRPDRA----AALDLLARFALPD-SILTKNITELSGG 137
Query: 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--TVLYTTH-QLE 781
+KQRI L R + + + D+ SA+D ++ + + ++ VL+ TH + +
Sbjct: 138 EKQRIALIRNLQFMPKILLLDEITSALDESN-KRNIEEMIHRYVREQNVAVLWITHDKDQ 196
Query: 782 FLDAADLVLVMKDGKI 797
+ AD V+ ++ G
Sbjct: 197 AIRHADKVITLQPGHA 212
|
Length = 223 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.9 bits (137), Expect = 2e-08
Identities = 57/235 (24%), Positives = 99/235 (42%), Gaps = 41/235 (17%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIP---------RISGAAIKVHGKKAYVPQSS 668
+ I G VA+ G GSGKS+LL + G I + G ++ G+ A + S
Sbjct: 25 LNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKS 84
Query: 669 WIQTG------------TIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVG- 715
TG ++ EN+L G F+ Q A L+ VG
Sbjct: 85 RANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQR--ALQALTRVGM 142
Query: 716 -----ERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ 770
+R LSGGQ+QR+ +ARA+ + V + D+P +++D + + +M L
Sbjct: 143 VHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESA-----RIVMDTLRD 197
Query: 771 ------KTVLYTTHQLEF-LDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQM 818
TV+ T HQ+++ L + ++ ++ G + G + ++ L R +
Sbjct: 198 INQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQFDNERFDHLYRSI 252
|
Length = 262 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 2e-08
Identities = 66/196 (33%), Positives = 95/196 (48%), Gaps = 36/196 (18%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILG-EIPR----ISGAAIKVHGKKAYVPQSSWIQTGT 674
I G VAV G G GKS+LL + G E P ++G A P +
Sbjct: 35 IPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTA----------PLAE------ 78
Query: 675 IRENI-LFGKDMRQSFYEEVLE--GCALNQDIEMWADGDLSVVG--ERGIN----LSGGQ 725
RE+ L +D R +++V++ G L A L+ VG +R LSGGQ
Sbjct: 79 AREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQ 138
Query: 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK---TVLYTTHQL-E 781
KQR+ LARA+ + + D+P A+DA T + Q L+ L Q+ TVL TH + E
Sbjct: 139 KQRVALARALIHRPGLLLLDEPLGALDALTRIEM--QDLIESLWQQHGFTVLLVTHDVSE 196
Query: 782 FLDAADLVLVMKDGKI 797
+ AD VL++++GKI
Sbjct: 197 AVAMADRVLLIEEGKI 212
|
Length = 257 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 2e-08
Identities = 52/194 (26%), Positives = 79/194 (40%), Gaps = 37/194 (19%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILG-EIPRISGAAIKVHGKKAYVPQSSWIQTGTIR 676
+ I KG A+ G GSGKS+L +I+G ++ I G
Sbjct: 21 LTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKG----------------- 63
Query: 677 ENILFGKDMRQSFYEEVLEGCALNQ----DIEMWADGDLSVVGERGIN--LSGGQKQRIQ 730
E+I D+ E G L +I + D R +N SGG+K+R +
Sbjct: 64 EDIT---DL--PPEERARLGIFLAFQYPPEIPGVKNADFL----RYVNEGFSGGEKKRNE 114
Query: 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKT-VLYTTHQLEFLDA--AD 787
+ + + D+ I D+P S +D L + + L + VL TH LD D
Sbjct: 115 ILQLLLLEPDLAILDEPDSGLDI-DALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPD 173
Query: 788 LVLVMKDGKIEQSG 801
V V+ DG+I +SG
Sbjct: 174 RVHVLYDGRIVKSG 187
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 2e-08
Identities = 56/227 (24%), Positives = 95/227 (41%), Gaps = 32/227 (14%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSI-----LGEIPRISGAAIKVHGKKAYVPQSSWIQT 672
+KI + A+ G G GKS+LL + L E R+ G +++ G+ Y P I+
Sbjct: 25 LKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGE-VRLFGRNIYSPDVDPIE- 82
Query: 673 GTIRENILFGKDMRQSF-----YEEVLEGCALNQ---------DIEMWA-------DGDL 711
+R + F Y+ V G LN + WA D
Sbjct: 83 --VRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVK 140
Query: 712 SVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK 771
+ + NLSGGQ+QR+ +ARA+ + + D+P + +D GT ++ L L +
Sbjct: 141 DRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDP-VGTAKIEELLFELKKEY 199
Query: 772 TVLYTTHQ-LEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
T++ TH + +D V + GK+ + G + + EL +
Sbjct: 200 TIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFENPEHELTEK 246
|
Length = 253 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 2e-08
Identities = 58/212 (27%), Positives = 94/212 (44%), Gaps = 27/212 (12%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIREN- 678
I GS VA+ G GSGKS+LL + G + SG + + G++ + +R+
Sbjct: 30 IPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGT-VTI-GERVITAGKKNKKLKPLRKKV 87
Query: 679 -ILFGKDMRQSFYEEVLEGCA---LN-----QDIEMWADGDLSVVG------ERG-INLS 722
I+F Q F E V + +N +D + A + +VG R LS
Sbjct: 88 GIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELS 147
Query: 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--TVLYTTHQL 780
GGQ +R+ +A + +V + D+P + +D G + L +K T + TH +
Sbjct: 148 GGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPK-GRKEMMEMFYKLHKEKGLTTVLVTHSM 206
Query: 781 EFLDAA---DLVLVMKDGKIEQSGKYEDLIAD 809
E DAA D ++VM G + G ++ AD
Sbjct: 207 E--DAARYADQIVVMHKGTVFLQGTPREIFAD 236
|
Length = 290 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 2e-08
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 1233 PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDP 1292
GE K+ + G +G GKSTL++ + ++ P+ G +L +G DIS + + R ++S Q P
Sbjct: 32 AGEFKL-ITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTP 90
Query: 1293 MLFQGTVRTNL 1303
LF TV NL
Sbjct: 91 TLFGDTVYDNL 101
|
Length = 225 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 2e-08
Identities = 52/205 (25%), Positives = 95/205 (46%), Gaps = 22/205 (10%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGA-----------AIKVHGKKAYVPQS 667
+ KG V G G+GKS+ + I G +P SG+ +V Y+P+
Sbjct: 24 EAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEH 83
Query: 668 SWIQTGT-IRENILFGKDMRQSFYEEVLEGCALNQDI-EMWADGDLSVVGERGIN-LSGG 724
+ + +RE + F + ++G L Q + EM L + I LS G
Sbjct: 84 NPLYLDMYVREYLQFIAGIYG------MKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKG 137
Query: 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD 784
+QR+ LA+A+ + V I D+P + +D + + + + + KT++ +TH ++ ++
Sbjct: 138 YRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEI-RNVIKNIGKDKTIILSTHIMQEVE 196
Query: 785 A-ADLVLVMKDGKIEQSGKYEDLIA 808
A D V+++ GKI K ++L A
Sbjct: 197 AICDRVIIINKGKIVADKKLDELSA 221
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 3e-08
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 1233 PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDP 1292
GE + G +G GKSTL++ + ++ P+ G +L +G D+S + + R ++S Q P
Sbjct: 28 AGEFIA-ITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTP 86
Query: 1293 MLFQGTVRTNLD-PLEQHSDQ 1312
LF TV NL P + + +
Sbjct: 87 ALFGDTVEDNLIFPWQIRNRR 107
|
Length = 223 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 3e-08
Identities = 47/205 (22%), Positives = 76/205 (37%), Gaps = 41/205 (20%)
Query: 601 DAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK 660
A N + + I V V G GSGKS+L++ L SG A +
Sbjct: 5 GANVHNLQN------LDVSIPLNVLVVVTGVSGSGKSTLVNEGLYA----SGKARLISFL 54
Query: 661 KAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720
+ I + L Q + L L Q +
Sbjct: 55 PKFSRNK------LIFIDQL------QFLIDVGLGYLTLGQKLS---------------T 87
Query: 721 LSGGQKQRIQLARAVYSNSD--VYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK-TVLYTT 777
LSGG+ QR++LA ++S ++I D+P + + L + + GL+ TV+
Sbjct: 88 LSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLE-VIKGLIDLGNTVILIE 146
Query: 778 HQLEFLDAADLVLVMKDGKIEQSGK 802
H L+ L +AD ++ G + GK
Sbjct: 147 HNLDVLSSADWIIDFGPGSGKSGGK 171
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (135), Expect = 3e-08
Identities = 54/191 (28%), Positives = 84/191 (43%), Gaps = 37/191 (19%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSW-------- 669
+KI +A G G GKS+LL I GA KV G+ Y ++ +
Sbjct: 41 LKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGA--KVEGRLLYRDRNIYDSQINSVK 98
Query: 670 --IQTG-----------TIRENILFG------KDMRQSFYEEVLEGCALNQDIEMWADGD 710
Q G +I ENI F K E+ L A+ ++++
Sbjct: 99 LRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVK------ 152
Query: 711 LSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ 770
+ E+G LSGGQ+QR+ +ARA+ DV + D+P SA+D + + + CL L Q
Sbjct: 153 -DKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLE-LKEQ 210
Query: 771 KTVLYTTHQLE 781
T++ TH ++
Sbjct: 211 YTIIMVTHNMQ 221
|
Length = 274 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 3e-08
Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 34/176 (19%)
Query: 623 GSKVAVCGSVGSGKSSLLSSILGEIPRISG---AAIKVHGKKAYVPQSS--WI------- 670
G + V G G GK++LL + G + SG ++ P + ++
Sbjct: 26 GEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLK 85
Query: 671 QTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN------LSGG 724
+ EN+ F+ A++ + + L+ VG G LS G
Sbjct: 86 PELSALENL--------HFW------AAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAG 131
Query: 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK-TVLYTTHQ 779
Q++R+ LAR S + ++I D+P +A+D G L L L++ VL TTHQ
Sbjct: 132 QQRRLALARLWLSRAPLWILDEPTTALDK-AGVALLAGLLRAHLARGGIVLLTTHQ 186
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.3 bits (135), Expect = 3e-08
Identities = 58/222 (26%), Positives = 96/222 (43%), Gaps = 25/222 (11%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRE 677
+++ KGS A+ G GSGKS+LL + G + G + V G S + +R+
Sbjct: 27 LEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG-KVTV-GDIVVSSTSKQKEIKPVRK 84
Query: 678 N--ILFGKDMRQSFYEEVLEGCAL--------NQDIEMWADGDLSVVG-------ERGIN 720
++F Q F E VL+ A + E A L +VG +
Sbjct: 85 KVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFE 144
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQL 780
LSGGQ +R+ +A + +V + D+P + +D + + S +TV+ TH +
Sbjct: 145 LSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLM 204
Query: 781 -EFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAH 821
+ D AD V +++ G I G D+ + V +KAH
Sbjct: 205 DDVADYADYVYLLEKGHIISCGTPSDVFQE-----VDFLKAH 241
|
Length = 288 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 3e-08
Identities = 51/199 (25%), Positives = 95/199 (47%), Gaps = 32/199 (16%)
Query: 608 KKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSI--LGE-IPRIS-GAAIKVHGKKAY 663
KK + + + A+ G GSGKS+LL SI + + P ++ +I +G Y
Sbjct: 17 KKKALN-SVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIY 75
Query: 664 VPQSSWIQTGTIRENILFGKDMRQ------SFYEEVLEGCALN--QDIEMWADG-DLSVV 714
P++ + +R+ I G +Q S YE V+ G L +D ++ + + S+
Sbjct: 76 SPRTDTVD---LRKEI--GMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLK 130
Query: 715 G------------ERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQ 762
G + + LSGGQ+QR+ +AR + ++ + + D+P SA+D + + ++
Sbjct: 131 GASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKI-EE 189
Query: 763 CLMGLLSQKTVLYTTHQLE 781
L+GL T+L T ++
Sbjct: 190 TLLGLKDDYTMLLVTRSMQ 208
|
Length = 252 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 4e-08
Identities = 30/94 (31%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
IE+E+L +Y LKG++ + P K ++G G+GKSTL+ L + P GR+
Sbjct: 5 IEVEDLHFRY-KDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVK 63
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDP--MLFQGTV 1299
+ G +++ + +RS++ ++ QDP +F TV
Sbjct: 64 VMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTV 97
|
Length = 274 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 4e-08
Identities = 50/224 (22%), Positives = 91/224 (40%), Gaps = 62/224 (27%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK--------------AYV 664
+ +G + G VGSG++ L++ + G R G I+++GK AY+
Sbjct: 285 SVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGE-IRLNGKDISPRSPLDAVKKGMAYI 343
Query: 665 PQSSWIQTG-----TIRENI----------------LFGKDMRQSFYEEVLE----GCA- 698
+S G +I +N+ LF + Q E E C
Sbjct: 344 TESRR-DNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHS 402
Query: 699 LNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTH 758
+NQ+I LSGG +Q++ +++ + +V IFD+P +D
Sbjct: 403 VNQNIT---------------ELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAE 447
Query: 759 LFKQCLMGLLSQ--KTVLYTTHQL-EFLDAADLVLVMKDGKIEQ 799
++K +M L+ K +L + +L E + D + V +G++ Q
Sbjct: 448 IYK--VMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQ 489
|
Length = 510 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 5e-08
Identities = 52/222 (23%), Positives = 86/222 (38%), Gaps = 45/222 (20%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILG-EIPR-----ISGAAIKVHGKK------AYVPQ 666
I KG ++ G GSGKS++ ++G E + + AI + V Q
Sbjct: 31 NIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQ 90
Query: 667 SSWIQ--TGTIRENILFG--------KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGE 716
+ Q ++ ++ FG +M E L+ ++M D
Sbjct: 91 NPDNQFVGSIVKYDVAFGLENHAVPYDEM-HRRVSEALK------QVDMLERAD-----Y 138
Query: 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK----- 771
LSGGQKQR+ +A + N V I D+ S +D +Q L+ L+ +
Sbjct: 139 EPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDA-----RQNLLDLVRKVKSEHN 193
Query: 772 -TVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNS 812
T++ TH L AD V+VM G + + G ++
Sbjct: 194 ITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHAEE 235
|
Length = 269 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.3 bits (133), Expect = 5e-08
Identities = 47/214 (21%), Positives = 101/214 (47%), Gaps = 20/214 (9%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI---------KVHGKK----AYV 664
+ + G V + G G+GK++ ++G +PR +G I +H + Y+
Sbjct: 24 LTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYL 83
Query: 665 PQSSWI-QTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGER-GINLS 722
PQ + I + ++ +N++ +R E E ++ E+ + + + + G +LS
Sbjct: 84 PQEASIFRRLSVYDNLMAVLQIRDDLSAEQRE----DRANELMEEFHIEHLRDSMGQSLS 139
Query: 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQL-E 781
GG+++R+++ARA+ +N + D+PF+ VD + + + S VL T H + E
Sbjct: 140 GGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRE 199
Query: 782 FLDAADLVLVMKDGKIEQSGKYEDLIADQNSELV 815
L + ++ G + G +++ D++ + V
Sbjct: 200 TLAVCERAYIVSQGHLIAHGTPTEILQDEHVKRV 233
|
Length = 241 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 5e-08
Identities = 78/374 (20%), Positives = 145/374 (38%), Gaps = 29/374 (7%)
Query: 961 RLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIII 1020
+L I + P+ + S+R+L ++D + RL L A+I L
Sbjct: 82 KLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFAF-SRLPELVQAIILTLGSAA 140
Query: 1021 LMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKA--PILHHFSESIAGATT 1078
++ + ++F L +V + ++IW ++ AR M R+ + + + + G
Sbjct: 141 YLAYLSPKMFLLTVVWIVVTIW--GGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKE 198
Query: 1079 IRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRS 1138
+ N+E + ++ I D H +R N A I+L+ L
Sbjct: 199 LT-LNRERAEYVHNNLYIPDAQEYRHH--------IIRANTFHLLAVNWSNIMLLGLIGL 249
Query: 1139 ----AIDPSLAG--LAATYGLNLNVLQA---WVIWNLCNVENKMISVERILQFTNIPSEA 1189
A+ A +AAT L L L+ + L + ++ +I + P +A
Sbjct: 250 VFWLALSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKA 309
Query: 1190 PLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKS 1249
+ P+W +EL N+ Y + I T + + ++G GSGKS
Sbjct: 310 DF--PRPQAFPDWK---TLELRNVRFAYQDN-AFHVGPINLTIKRGELVFLIGGNGSGKS 363
Query: 1250 TLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQH 1309
TL L + +P G IL+DG +S L+D R S + D LF + Q
Sbjct: 364 TLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQL 423
Query: 1310 SDQEIWEVKISKLL 1323
++ + ++++
Sbjct: 424 IEKWLQRLELAHKT 437
|
Length = 546 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 5e-08
Identities = 33/97 (34%), Positives = 55/97 (56%), Gaps = 4/97 (4%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTH 778
LSGGQKQR+ +A AV + I D+ S +D L + + G+ Q TV+ TH
Sbjct: 141 LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELI-KTIKGIRDDYQMTVISITH 199
Query: 779 QLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELV 815
L+ + +D VLVMK+G++E + +L + + ++L+
Sbjct: 200 DLDEVALSDRVLVMKNGQVESTSTPRELFS-RGNDLL 235
|
Length = 279 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 6e-08
Identities = 27/68 (39%), Positives = 46/68 (67%), Gaps = 5/68 (7%)
Query: 1240 VVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG---LQDLRS-RLSIIPQDPMLF 1295
++G +GSGKSTL++ + R++EP+ G++LIDG DI+ + L++LR ++S++ Q L
Sbjct: 55 IMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALL 114
Query: 1296 -QGTVRTN 1302
TV N
Sbjct: 115 PHRTVLEN 122
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 57.3 bits (138), Expect = 6e-08
Identities = 45/158 (28%), Positives = 87/158 (55%), Gaps = 13/158 (8%)
Query: 664 VPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGC---ALNQDIEMWADGDLSVVGERGIN 720
V Q + +I ENI FGK+ + E+V C A+++ IE + + VG G +
Sbjct: 1301 VSQEPMLFNMSIYENIKFGKE--DATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKS 1358
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--KTVLYTTH 778
LSGGQKQRI +ARA+ + + D+ S++D+++ L ++ ++ + + KT++ H
Sbjct: 1359 LSGGQKQRIAIARALLREPKILLLDEATSSLDSNS-EKLIEKTIVDIKDKADKTIITIAH 1417
Query: 779 QLEFLDAADLVLVM----KDGKIEQS-GKYEDLIADQN 811
++ + +D ++V + G Q+ G +E+L++ Q+
Sbjct: 1418 RIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQD 1455
|
Length = 1466 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 6e-08
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 14/90 (15%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTG-------THLFKQCLMGLLSQKTV 773
LSGGQ+QR+ + R + + V++ D+P S +DA + L K+ +T+
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL------GRTM 187
Query: 774 LYTTH-QLEFLDAADLVLVMKDGKIEQSGK 802
+Y TH Q+E + AD ++V+ G++ Q GK
Sbjct: 188 IYVTHDQVEAMTLADKIVVLDAGRVAQVGK 217
|
Length = 369 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 6e-08
Identities = 47/237 (19%), Positives = 97/237 (40%), Gaps = 41/237 (17%)
Query: 630 GSVGSGKSSLLSSILGEIPRISGAAIKVHGKK---------AYVPQS-SWIQTGTIRENI 679
G G+GK++ ILG + G I +G Y+P+ T+ + +
Sbjct: 35 GPNGAGKTTTFRMILGLLEPTEGE-ITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQL 93
Query: 680 LFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI---NLSGGQKQRIQLARAVY 736
+ +++ E+ + ++ W + L +VG++ LS G +Q+IQ AV
Sbjct: 94 KYLAELKGMPKAEI------QKKLQAWLE-RLEIVGKKTKKIKELSKGNQQKIQFISAVI 146
Query: 737 SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-KTVLYTTHQLEFLDA-ADLVLVMKD 794
++ I D+PFS +D L K + L + T+++++H++E ++ D +L++K
Sbjct: 147 HEPELLILDEPFSGLDP-VNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKK 205
Query: 795 GKIEQSGKYEDLIAD-----------------QNSELVRQMKAHRKSLDQVNPPQED 834
G+ G ED+ N + ++ + ++ E
Sbjct: 206 GQTVLYGTVEDIRRSFGKKRLVIESDLSLEELANIPGILKITETKDGSWRIQIENET 262
|
Length = 300 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 7e-08
Identities = 35/128 (27%), Positives = 61/128 (47%), Gaps = 12/128 (9%)
Query: 1204 SSGKIELENLLVQYNPTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPS 1262
+ ENL Y V+ ++ GE +G++G G+GK+T + +V P
Sbjct: 1 DMSTLVAENLAKSYKKRK--VVNDVSLEVNSGEI-VGLLGPNGAGKTTTFYMIVGLVRPD 57
Query: 1263 GGRILIDGVDISMIGLQDLRSRLSI--IPQDPMLFQG-TVRTNLDP-LEQHSD---QEIW 1315
G+IL+D DI+ + + R+RL I +PQ+ +F+ TV N+ LE +
Sbjct: 58 SGKILLDDEDITKLPM-HKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAER 116
Query: 1316 EVKISKLL 1323
+ ++ LL
Sbjct: 117 KEELDALL 124
|
Length = 243 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 7e-08
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDI---SMIGLQD 1280
+ GI+ T + +G+VG +GSGKSTL AL R++ G I DG DI S ++
Sbjct: 302 AVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRP 360
Query: 1281 LRSRLSIIPQDP 1292
LR R+ ++ QDP
Sbjct: 361 LRRRMQVVFQDP 372
|
Length = 534 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 7e-08
Identities = 29/94 (30%), Positives = 54/94 (57%), Gaps = 12/94 (12%)
Query: 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--KTV--- 773
+LSGG+KQR+ + RA+ + ++ + D+P +++D K+ L+ L + + +
Sbjct: 127 GSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPR-----KRELLPYLERLAREINIP 181
Query: 774 -LYTTHQL-EFLDAADLVLVMKDGKIEQSGKYED 805
LY +H L E L AD V+V++ GK++ G E+
Sbjct: 182 ILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEE 215
|
Length = 352 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 8e-08
Identities = 20/55 (36%), Positives = 34/55 (61%)
Query: 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGL 1278
LK ++ P ++IG++GR G+GKSTL++ L + P G + + G S++GL
Sbjct: 37 ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGL 91
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 53.6 bits (130), Expect = 9e-08
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 16/98 (16%)
Query: 1208 IELENLLVQYNP---TLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGG 1264
I +E+ ++ LK I P + + +VG GSGKS+L+ AL +E G
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 1265 RILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTN 1302
+ + G ++ + Q+P + GT+R N
Sbjct: 61 SVSVPG-------------SIAYVSQEPWIQNGTIREN 85
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 1e-07
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 7/82 (8%)
Query: 1209 ELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILI 1268
E+E+L V Y VL+ ++ + + +VG G+GKSTL++A+ +++P+ G I +
Sbjct: 1 EVEDLTVSYGGHP--VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRV 58
Query: 1269 DGVDISMIGLQDLRSRLSIIPQ 1290
G + R R+ +PQ
Sbjct: 59 FGKPLEKE-----RKRIGYVPQ 75
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 1e-07
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 7/98 (7%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
+ L+++ Y LPM T P + + ++G +G+GKSTL+ + P+ G IL
Sbjct: 2 LALDDVRFSYG-HLPMRF---DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEIL 57
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLFQG-TVRTNLD 1304
I+GVD +S++ Q+ LF TV N+
Sbjct: 58 INGVD--HTASPPAERPVSMLFQENNLFAHLTVAQNIG 93
|
Length = 231 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 1e-07
Identities = 23/85 (27%), Positives = 40/85 (47%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
I +N+ QY LK ++ P + +VG GSGKST+ + + + + G I
Sbjct: 8 IVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIF 67
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDP 1292
+ I+ + LR + I+ Q+P
Sbjct: 68 YNNQAITDDNFEKLRKHIGIVFQNP 92
|
Length = 269 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (131), Expect = 1e-07
Identities = 35/112 (31%), Positives = 64/112 (57%), Gaps = 8/112 (7%)
Query: 674 TIRENILFGKDMR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729
+I EN+ +G +R +S EE +E N +W + +G+ NLSGGQ+QR+
Sbjct: 114 SIFENVAYGLRIRGVKRRSILEERVENALRNA--ALWDEVK-DRLGDLAFNLSGGQQQRL 170
Query: 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLE 781
+ARA+ ++ ++ +FD+P SA+D T ++ + L ++ T+L TH ++
Sbjct: 171 CIARALATDPEILLFDEPTSALDP-IATASIEELISDLKNKVTILIVTHNMQ 221
|
Length = 265 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 1e-07
Identities = 33/120 (27%), Positives = 61/120 (50%), Gaps = 5/120 (4%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
IE +L Y+ + L I P +I V+G G+GKSTL + +++P+ G +L
Sbjct: 4 IETRDLCYSYSGSKE-ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVL 62
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDP--MLFQGTVRTNL--DPLEQHSDQEIWEVKISKLL 1323
I G I+ ++++R + ++ Q+P +F TV ++ P+ D+E ++S L
Sbjct: 63 IRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSAL 122
|
Length = 277 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 1e-07
Identities = 60/244 (24%), Positives = 95/244 (38%), Gaps = 61/244 (25%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI----KVHGKKAYVPQSSWI--- 670
M I + S A+ G G GKS+ L + RI A I ++ G+ Y + +
Sbjct: 66 MDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELR 125
Query: 671 -QTG-----------TIRENILFG--------------------KDMRQSFYEEVLEGCA 698
+ G +IRENI +G KD E L A
Sbjct: 126 KRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAA 185
Query: 699 LNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTH 758
L ++ + + + LSGGQ+QR+ +AR + + +V + D+P SA+D T
Sbjct: 186 LWDEVN-------DRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDP-IATS 237
Query: 759 LFKQCLMGLLSQKTVLYTTHQLE-----------FLDAADLVLVMKDGKI---EQSGKYE 804
+ + L + TV+ TH ++ FL +LV KI +S + E
Sbjct: 238 KIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVEYDDTDKIFENPESQRVE 297
Query: 805 DLIA 808
D I
Sbjct: 298 DYIT 301
|
Length = 305 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 1e-07
Identities = 53/204 (25%), Positives = 90/204 (44%), Gaps = 36/204 (17%)
Query: 623 GSKVAVCGSVGSGKSSLLSSILGEIPRISG----AAIKVHG--------KKAYVPQSSWI 670
GS + G GSGKS+LL + G + +G A + +HG + A V Q S
Sbjct: 27 GSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDS-- 84
Query: 671 QTG---TIRENILFGKDMRQSFY-------EEVLEGCALNQDIEMWADGDLSVVGERGIN 720
T T+R+ + G+ +S + V++ ++ AD D+S
Sbjct: 85 DTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMS-------T 137
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVD--AHTGTHLFKQCLMGLLSQKTVLYTTH 778
LSGG++QR+ +ARA+ + + D+P + +D A T + L + TV+ H
Sbjct: 138 LSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA--TGVTVVAALH 195
Query: 779 QLEF-LDAADLVLVMKDGKIEQSG 801
L D V+V+ G++ +G
Sbjct: 196 DLNLAASYCDHVVVLDGGRVVAAG 219
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 1e-07
Identities = 44/210 (20%), Positives = 87/210 (41%), Gaps = 32/210 (15%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI-----------KVHGKKAYVPQ 666
++ +G + G G+GK++ + + + SG A +V + V Q
Sbjct: 21 FRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQ 80
Query: 667 SSWIQTG-TIRENI-LFGK------DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERG 718
+ T EN+ + + R+ +E+L+ + + D V
Sbjct: 81 DLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDF------VGLLEAADRLVK---- 130
Query: 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQC-LMGLLSQKTVLYTT 777
SGG ++R+++AR++ +V D+P +D T H+++ + T+L TT
Sbjct: 131 -TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTT 189
Query: 778 HQLEFLDA-ADLVLVMKDGKIEQSGKYEDL 806
H +E + D V ++ G+I G E+L
Sbjct: 190 HYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 1e-07
Identities = 29/110 (26%), Positives = 55/110 (50%), Gaps = 19/110 (17%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-----KTVLY 775
LSGGQ+QR+ +ARA+ + V + D+P A+D+H+G +M +L Q TV+
Sbjct: 145 LSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEE-----VMAILHQLRDRGHTVII 199
Query: 776 TTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSL 825
TH + A+ V+ ++DG+I + + ++ + + +
Sbjct: 200 VTHDPQVAAQAERVIEIRDGEI---------VRNPPAQEKVNVAGGTEPV 240
|
Length = 648 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 1e-07
Identities = 25/87 (28%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
I EN+ Y P L+ ++ P + + + G +G+GKSTL++ ++ P+ G+IL
Sbjct: 2 IRFENVSKAY-PGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKIL 60
Query: 1268 IDGVDISMIGLQD---LRSRLSIIPQD 1291
++G D+S + ++ LR ++ ++ QD
Sbjct: 61 VNGHDLSRLKGREIPFLRRQIGVVFQD 87
|
Length = 223 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 2e-07
Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 11/68 (16%)
Query: 1234 GEKKIGVV-GRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLR----SRLSII 1288
E +I V+ G +GSGKSTL++ L R++EP+ G IL+DG DI+ + +LR ++S
Sbjct: 52 EEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKIS-- 109
Query: 1289 PQDPMLFQ 1296
M+FQ
Sbjct: 110 ----MVFQ 113
|
Length = 386 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.8 bits (133), Expect = 2e-07
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCT-FPGEKKI-GVVGRTGSGKSTLIQALFRVVEPSGGR 1265
+EL + + L G++ T PGE + ++G G+GKSTL++ L V P G
Sbjct: 9 LELRGISKSFGGVK--ALDGVSLTVRPGE--VHALLGENGAGKSTLMKILSGVYPPDSGE 64
Query: 1266 ILIDGVDISMIGLQDLRSR-LSIIPQDPMLF-QGTVRTNL 1303
ILIDG ++ +D + ++ + Q+ L +V N+
Sbjct: 65 ILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENI 104
|
Length = 500 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 2e-07
Identities = 62/233 (26%), Positives = 107/233 (45%), Gaps = 35/233 (15%)
Query: 608 KKPTIKLTDKMKIMKGSKVAVCGSVGSGKSS---LLSSILGEIP------RISGAAIKVH 658
KKP + I +GS A+ G GSGKS+ L++ +L +P +I+ I +
Sbjct: 19 KKPALNDIS-FSIPRGSWTALIGHNGSGKSTISKLINGLL--LPDDNPNSKITVDGITLT 75
Query: 659 GKKAY--------VPQSSWIQ--TGTIRENILFGKDMRQSFYEEVLEGCA-LNQDIEMWA 707
K + V Q+ Q T+ +++ FG + R E+++ + D+ M
Sbjct: 76 AKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGM-- 133
Query: 708 DGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL 767
L + NLSGGQKQR+ +A + + I D+ S +D + K L+
Sbjct: 134 ---LDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILK--LIRK 188
Query: 768 LSQK---TVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
L +K TV+ TH ++ + AD VLV+ DGK+ G ++ E++++
Sbjct: 189 LKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIF--SKVEMLKE 239
|
Length = 282 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 2e-07
Identities = 57/226 (25%), Positives = 97/226 (42%), Gaps = 38/226 (16%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLL------------SSILGEIPRISGAAIKVHGKKAY-- 663
+ I K A+ G G GKS+LL I G+I +G I G
Sbjct: 27 ISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDI-LYNGENIMDSGADVVAL 85
Query: 664 ------VPQSSWIQTGTIRENILFG------KDMRQ--SFYEEVLEGCALNQDIEMWADG 709
V Q +I EN+ +G K+ + + E+ L+G AL +++
Sbjct: 86 RRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVK----- 140
Query: 710 DLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS 769
+ + ++LSGGQ+QR+ +AR + N +V + D+P SA+D T + + L
Sbjct: 141 --DRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDP-IATAKIEDLIEDLKK 197
Query: 770 QKTVLYTTHQL-EFLDAADLVLVMKDGKIEQSGKYEDLIADQNSEL 814
+ TV+ TH + + +D M GK+ + K + + + EL
Sbjct: 198 EYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFENPHEEL 243
|
Length = 253 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 2e-07
Identities = 58/234 (24%), Positives = 102/234 (43%), Gaps = 28/234 (11%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSI-----LGEIPRISGAAIKVHGKKAYVPQSSWIQT 672
+ I K A G G GKS++L L R+ G + HGK Y P ++
Sbjct: 31 LDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGK-VTFHGKNLYAPDVDPVEV 89
Query: 673 ---------------GTIRENILFGKDMR--QSFYEEVLEGCALNQDIEMWADGDLSVVG 715
+I +NI +G + + +E++E +L Q +W D +
Sbjct: 90 RRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVER-SLRQAA-LW-DEVKDKLK 146
Query: 716 ERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLY 775
+ G++LSGGQ+QR+ +ARA+ +V + D+P SA+D T ++ + L Q T++
Sbjct: 147 QSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDP-ISTLRIEELMHELKEQYTIII 205
Query: 776 TTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQV 828
TH ++ +D+ E G+Y L+ +E + + + D V
Sbjct: 206 VTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEFDRTEKIFNSPQQQATRDYV 259
|
Length = 264 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 2e-07
Identities = 42/180 (23%), Positives = 69/180 (38%), Gaps = 42/180 (23%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK-VHGKKAYVPQSSWIQTGTIR 676
+I G ++ + G G+GKSSL ++ G P SG ++PQ ++ GT+R
Sbjct: 22 FEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLR 81
Query: 677 ENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY 736
E +++ W D LSGG++QR+ AR +
Sbjct: 82 EQLIYP-----------------------WDD-----------VLSGGEQQRLAFARLLL 107
Query: 737 SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--TVLYTTHQLEFLDAADLVLVMKD 794
D+ SA+D + + L LL + TV+ H+ D VL +
Sbjct: 108 HKPKFVFLDEATSALDEES-----EDRLYQLLKELGITVISVGHRPSLWKFHDRVLDLDG 162
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 3e-07
Identities = 24/85 (28%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1266
+EL + ++ L G++ + GE ++G G+GKSTL++ L + +P G I
Sbjct: 1 LELRGITKRFGGVK--ALDGVSLSVRRGEV-HALLGENGAGKSTLMKILSGLYKPDSGEI 57
Query: 1267 LIDGVDISMIGLQD-LRSRLSIIPQ 1290
L+DG ++S +D R+ ++++ Q
Sbjct: 58 LVDGKEVSFASPRDARRAGIAMVYQ 82
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 52.9 bits (128), Expect = 3e-07
Identities = 33/98 (33%), Positives = 54/98 (55%), Gaps = 6/98 (6%)
Query: 1209 ELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILI 1268
E+ NL V Y + +L+G++ P + V+GR G GK+TL++ L ++ G I +
Sbjct: 2 EVSNLNVYYGQS--HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRL 59
Query: 1269 DGVDISMIGLQDLRSRLSI--IPQDPMLF-QGTVRTNL 1303
DG DI+ + + R+R I +PQ +F + TV NL
Sbjct: 60 DGEDITKLPPHE-RARAGIAYVPQGREIFPRLTVEENL 96
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 3e-07
Identities = 26/94 (27%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
I ENL Y+ +L G++ + + ++G G+GKSTL++AL + P G +
Sbjct: 2 IRAENL--SYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVT 59
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQD-PMLFQGTVR 1300
++GV ++ ++L +++PQ+ + F TV+
Sbjct: 60 LNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQ 93
|
Length = 259 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 3e-07
Identities = 50/209 (23%), Positives = 87/209 (41%), Gaps = 45/209 (21%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEI-P-----RISGAAI-KVHGKK-AYVPQS-- 667
+ I G V + G G+GKS+LL I E P R++G + + G+ Y+ +
Sbjct: 22 ISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIG 81
Query: 668 ------SWIQTGTIRENILF--------GKDMRQSFYEEVLEGCALNQDIEMWADGDLSV 713
+ + EN+ F +++R+ LE L+
Sbjct: 82 VVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRV-PAALELVGLSHKHRALPAE---- 136
Query: 714 VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGT---HLFKQC-LMGLLS 769
LSGG++QR+ +ARA+ ++ + I D+P +D T +L K+ G
Sbjct: 137 -------LSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGT-- 187
Query: 770 QKTVLYTTHQLEFLDA-ADLVLVMKDGKI 797
TV+ TH E +D V+ ++ GK+
Sbjct: 188 --TVVVATHAKELVDTTRHRVIALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 3e-07
Identities = 54/208 (25%), Positives = 91/208 (43%), Gaps = 34/208 (16%)
Query: 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRE---- 677
+ S++AV G G+GKS+L G + SG+ + + G+ I IRE
Sbjct: 29 RNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVL-IRGEP--------ITKENIREVRKF 79
Query: 678 -NILFGKDMRQSFYEEVLEG-----CALNQDIEMWADGDLSVVGERGI---------NLS 722
++F Q F V + L D E A S + G+ +LS
Sbjct: 80 VGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLS 139
Query: 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK---TVLYTTHQ 779
GG+K+R+ +A + V + D+P + +D L + L + TV+++THQ
Sbjct: 140 GGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELID--FLNDLPETYGMTVIFSTHQ 197
Query: 780 LEFL-DAADLVLVMKDGKIEQSGKYEDL 806
L+ + + AD + VM G+I G E++
Sbjct: 198 LDLVPEMADYIYVMDKGRIVAYGTVEEI 225
|
Length = 277 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 3e-07
Identities = 51/209 (24%), Positives = 96/209 (45%), Gaps = 42/209 (20%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR--------ISGAAIK------------- 656
+++ G V +CG G+GKS+L+ + G P SG+ +K
Sbjct: 22 LEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIV 81
Query: 657 -VHGKKAYVPQSSWIQTGTIRENILFGKDM-----RQSFYEEVLEGCALNQDIEMWADGD 710
+H + VP+ S + ENI G ++ R ++ L L +++++ AD
Sbjct: 82 IIHQELTLVPELS------VAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNV 135
Query: 711 LSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ 770
VG+ G GGQ+Q +++A+A+ + + I D+P S++ L ++ L
Sbjct: 136 TRPVGDYG----GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLD--IIRDLKA 189
Query: 771 KTV--LYTTHQLEFLDA-ADLVLVMKDGK 796
V +Y +H+L + A D + V++DG+
Sbjct: 190 HGVACVYISHKLNEVKAVCDTICVIRDGQ 218
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 3e-07
Identities = 44/200 (22%), Positives = 87/200 (43%), Gaps = 23/200 (11%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA----IKVHGKKAYVPQSSWIQTG 673
+ G + G G+GK++ L + G + +G A V + A + +
Sbjct: 26 FTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSD 85
Query: 674 --------TIRENILFGKDMRQSFYEEVLEGCALNQDIEMWAD--GDLSVVGERGINLSG 723
T REN+ + + L+G L +E AD G ++ R S
Sbjct: 86 STGLYDRLTARENLEYFAGLYG------LKGDELTARLEELADRLGMEELLDRRVGGFST 139
Query: 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-KTVLYTTHQLEF 782
G +Q++ +ARA+ + V + D+P + +D T ++ + L + K +L++TH ++
Sbjct: 140 GMRQKVAIARALVHDPPVLLLDEPTTGLDV-MATRALREFIRQLRALGKCILFSTHIMQE 198
Query: 783 LDA-ADLVLVMKDGKIEQSG 801
++ D V+V+ G++ G
Sbjct: 199 VERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 3e-07
Identities = 46/209 (22%), Positives = 89/209 (42%), Gaps = 44/209 (21%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSL---LSSIL------GEIPRISGAAIKVHGKK------- 661
+K+ G V++CG G+GKS+L LS + GEI G ++ +
Sbjct: 26 LKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEI-IFEGEELQASNIRDTERAGI 84
Query: 662 -------AYVPQSSWIQTGTIRENILFGKDMRQSF---YEEVLEGCALNQDIEMWADGDL 711
A V + S + ENI G ++ Y+ + ++ A L
Sbjct: 85 AIIHQELALVKELS------VLENIFLGNEITPGGIMDYDAMYLRAQ-----KLLAQLKL 133
Query: 712 SV-VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ 770
+ NL GQ+Q +++A+A+ + + I D+P +++ L ++ L
Sbjct: 134 DINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLD--IIRDLKA 191
Query: 771 KTV--LYTTHQLEFLDA-ADLVLVMKDGK 796
+ +Y +H+L + A +D + V++DG+
Sbjct: 192 HGIACIYISHKLNEVKAISDTICVIRDGR 220
|
Length = 506 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 52.1 bits (126), Expect = 4e-07
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
Query: 1208 IELENLLVQY--NPTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGG 1264
+E+ N+ Y L+ I+ + GE + +VG +G GKSTL++ + + P+ G
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEF-VALVGPSGCGKSTLLRIIAGLERPTSG 59
Query: 1265 RILIDGVDISMIGLQDLRSRLSIIPQDPMLF 1295
+L+DG + + Q L
Sbjct: 60 EVLVDGEPV-----TGPGPDRGYVFQQDALL 85
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 4e-07
Identities = 57/231 (24%), Positives = 93/231 (40%), Gaps = 56/231 (24%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISG---------AAIKVHGKKAYV------ 664
I +G V V GS G+GKS+LL++I G++ SG V + +
Sbjct: 29 IAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQD 88
Query: 665 PQSSWIQTGTIRENILF----GKDM---------RQSFYEEVLEGCALNQDIEMWADGDL 711
P + TI EN+ GK R+S + E L L G
Sbjct: 89 PLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGL---------GLE 139
Query: 712 SVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK 771
+ + +R LSGGQ+Q + L A + + D+ +A+D T + + L+ K
Sbjct: 140 NRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVME------LTAK 193
Query: 772 -------TVLYTTHQLE-FLDAADLVLVMKDGKIEQSGKYEDLIADQNSEL 814
T L TH +E LD + ++++ GKI D+ ++ + L
Sbjct: 194 IVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVL-----DVTGEEKASL 239
|
Length = 263 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (126), Expect = 4e-07
Identities = 64/262 (24%), Positives = 111/262 (42%), Gaps = 35/262 (13%)
Query: 593 IEAGEYAWDAREENFKKPTIKLTDK-------MKIMKGSKVAVCGSVGSGKSSLLSSILG 645
+EAG+ A D N + + + DK +KI S + G GSGKS+LL +L
Sbjct: 1 MEAGKSAEDVF--NISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLK-VLN 57
Query: 646 EIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQ-------SFYEEVL---- 694
+ I + IKV GK Y + + Q I+ G +Q S Y+ +
Sbjct: 58 RLIEIYDSKIKVDGKVLYFGKDIF-QIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLK 116
Query: 695 -EGCALNQDIEMWADGDLSVVG----------ERGINLSGGQKQRIQLARAVYSNSDVYI 743
G ++I+ + L VG LSGGQ+QR+ +ARA+ V +
Sbjct: 117 SHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLL 176
Query: 744 FDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQ-LEFLDAADLVLVMKDGKIEQSGK 802
D+P S +D + ++ + L ++ ++ +H + AD V + +G++ + G
Sbjct: 177 MDEPTSMIDI-VNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGS 235
Query: 803 YEDLIADQNSELVRQMKAHRKS 824
++ +EL + R S
Sbjct: 236 SNEIFTSPKNELTEKYVIGRIS 257
|
Length = 257 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 4e-07
Identities = 38/175 (21%), Positives = 59/175 (33%), Gaps = 45/175 (25%)
Query: 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILF 681
G + + G GSGK++L ++ E+ G I + G I + + +L
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDG--------EDILEEVLDQLLLI 52
Query: 682 GKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDV 741
VG + + SG + R+ LA A DV
Sbjct: 53 I-------------------------------VGGKKASGSGELRLRLALALARKLKPDV 81
Query: 742 YIFDDPFSAVDAHTGTHLFKQCLMGLLSQK------TVLYTTHQLEFLDAADLVL 790
I D+ S +DA L + LL TV+ TT+ + L A L
Sbjct: 82 LILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR 136
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 54.6 bits (131), Expect = 4e-07
Identities = 63/250 (25%), Positives = 115/250 (46%), Gaps = 35/250 (14%)
Query: 627 AVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK------------AYVPQSSWI-QTG 673
A G G+GK++ LS + G +P SG + V GK PQ + +
Sbjct: 960 AFLGHNGAGKTTTLSILTGLLPPTSGTVL-VGGKDIETNLDAVRQSLGMCPQHNILFHHL 1018
Query: 674 TIRENILFGKDMRQSFYEEV-LEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732
T+ E+ILF ++ +EE LE A+ +D + + E +LSGG ++++ +A
Sbjct: 1019 TVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRN-----EEAQDLSGGMQRKLSVA 1073
Query: 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLV 791
A ++ V + D+P S VD ++ ++ L+ S +T++ +TH ++ D D + +
Sbjct: 1074 IAFVGDAKVVVLDEPTSGVDPYSRRSIW-DLLLKYRSGRTIIMSTHHMDEADLLGDRIAI 1132
Query: 792 MKDGKIEQSGKYEDLIADQNS-------ELVRQMK---AHRKSLDQVNPPQEDKCLSRVP 841
+ G++ SG L +N LVR+MK + R + +R P
Sbjct: 1133 ISQGRLYCSGTPLFL---KNCFGTGFYLTLVRKMKNIQSQRGGCEGTCSCTSKGFSTRCP 1189
Query: 842 CQMSQITEER 851
++ +IT E+
Sbjct: 1190 ARVDEITPEQ 1199
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 5e-07
Identities = 78/345 (22%), Positives = 133/345 (38%), Gaps = 68/345 (19%)
Query: 484 REIERDSLKKYLYTCSAIAFLFWASPTLVSVI--TFGVCILLKTPLTSGAVLSALATFRI 541
+E ++ + A + W++ L+ +I F + + L T+ A L
Sbjct: 219 QEYRHHIIRANTFHLLA---VNWSNIMLLGLIGLVFWLALSLGWASTNVAATIVL-VLLF 274
Query: 542 LQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDV-AIDIEAGEYAW 600
L+ P+ + ++ + +V+ +I + E K D +++ +A+
Sbjct: 275 LRTPLLSAVGILPTLLTAQVAFNKIAKL--ELAPYKADFPRPQAFPDWKTLELRNVRFAY 332
Query: 601 DAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK 660
++ F I LT I +G V + G GSGKS+L + G
Sbjct: 333 --QDNAFHVGPINLT----IKRGELVFLIGGNGSGKSTLAMLLTG--------------- 371
Query: 661 KAYVPQSSWIQTGTIRENILFGK--------DMRQSF---YEEV--------LEGCALNQ 701
Y PQS G I + GK D R+ F + + EG A Q
Sbjct: 372 -LYQPQS-----GEILLD---GKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQ 422
Query: 702 DIEMWAD-----GDLSVVGERGIN--LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAH 754
IE W S+ R N LS GQK+R+ L A+ D+ + D+ + D
Sbjct: 423 LIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPA 482
Query: 755 TGTHLFKQCLMGLLSQ--KTVLYTTHQLEFLDAADLVLVMKDGKI 797
F Q L+ LL + KT+ +H + AD +L M++G++
Sbjct: 483 F-RREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQL 526
|
Length = 546 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 5e-07
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 4/105 (3%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--TVLYTTH 778
LSGG QR+ +A A+ I D+P + +D + K L L +L TH
Sbjct: 126 LSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKL-LRELRQLFGTGILLITH 184
Query: 779 QLEFL-DAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHR 822
L + AD V VM DG+I + G +++ + E R++ +
Sbjct: 185 DLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTRKLLSAH 229
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (125), Expect = 5e-07
Identities = 53/208 (25%), Positives = 92/208 (44%), Gaps = 27/208 (12%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYV--------------- 664
I KG V++ G GSGKS+ I G G +K+ G+
Sbjct: 30 ITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGK-VKIDGELLTAENVWNLRRKIGMVFQ 88
Query: 665 -PQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723
P + ++ T+ +++ FG + + EE+++ D + A L LSG
Sbjct: 89 NPDNQFV-GATVEDDVAFGMENQGIPREEMIK----RVDEALLAVNMLDFKTREPARLSG 143
Query: 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK---TVLYTTHQL 780
GQKQR+ +A + ++ I D+ S +D + + ++ + +K TVL TH L
Sbjct: 144 GQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMR--VIHEIKEKYQLTVLSITHDL 201
Query: 781 EFLDAADLVLVMKDGKIEQSGKYEDLIA 808
+ ++D +LVMK G+I + +L A
Sbjct: 202 DEAASSDRILVMKAGEIIKEAAPSELFA 229
|
Length = 277 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 5e-07
Identities = 49/207 (23%), Positives = 83/207 (40%), Gaps = 45/207 (21%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILG-EIP-----RISGAAIKVHGKKAYVPQ------ 666
I KG + + G G+GK++LL + G P RI+G + + +P
Sbjct: 24 HIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVN-RLRGRQLPLLRRRIG 82
Query: 667 -----SSWIQTGTIRENILF-----GKDMR--QSFYEEVLEGCALNQDIEMWADGDLSVV 714
+ T+ EN+ GK R Q L L + + +
Sbjct: 83 VVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPE------ 136
Query: 715 GERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGT---HLFKQ-CLMGLLSQ 770
LSGG++QR+ +ARA+ ++ + + D+P +D L K+ G
Sbjct: 137 -----QLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGT--- 188
Query: 771 KTVLYTTHQLEFLDA-ADLVLVMKDGK 796
TV+ TH L +D A V+++ DG+
Sbjct: 189 -TVIVATHDLSLVDRVAHRVIILDDGR 214
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 5e-07
Identities = 44/167 (26%), Positives = 73/167 (43%), Gaps = 44/167 (26%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSI-----LGEIPRISGAAIKVHGKKAYVPQSSWIQ- 671
+ I + A+ G G GKS+ L ++ L +I G + + G+ Y Q
Sbjct: 24 LDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGE-VLLDGQDIYKSDIDVNQL 82
Query: 672 ---TG-----------TIRENILFG------KDMRQ--SFYEEVLEGCALNQDIEMWADG 709
G +I +N+ +G KD ++ E+ L+G AL W +
Sbjct: 83 RKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAAL------WDE- 135
Query: 710 DLSVVGER----GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVD 752
V +R + LSGGQ+QR+ +ARA+ +V + D+P SA+D
Sbjct: 136 ----VKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALD 178
|
Length = 250 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 51.7 bits (125), Expect = 6e-07
Identities = 39/127 (30%), Positives = 62/127 (48%), Gaps = 11/127 (8%)
Query: 1208 IELENLLVQYNPTLPMV--LKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGG 1264
IEL+NL Y V LKG++ + GE + +VG +GSGKSTL+ L + P+ G
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEF-VAIVGPSGSGKSTLLNILGGLDRPTSG 59
Query: 1265 RILIDGVDISMIGLQDL----RSRLSIIPQDPMLFQG-TVRTNLD-PLE-QHSDQEIWEV 1317
+ +DG DIS + ++L R + + Q L T N++ PL ++
Sbjct: 60 EVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRE 119
Query: 1318 KISKLLT 1324
+ +LL
Sbjct: 120 RAEELLE 126
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 6e-07
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
I LEN+ Y P L+ I + IG++G+ GSGKSTL L ++ P G++L
Sbjct: 2 IRLENVSYSYPDGTP-ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVL 60
Query: 1268 IDGVDISMIG-LQDLRSRLSIIPQDP 1292
+ G+D LQ +R + I+ Q+P
Sbjct: 61 VSGIDTGDFSKLQGIRKLVGIVFQNP 86
|
Length = 274 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 6e-07
Identities = 56/233 (24%), Positives = 94/233 (40%), Gaps = 53/233 (22%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAY---------------- 663
+ G A+ G G+GKS+L+ +L I + I ++ Y
Sbjct: 28 VYPGEIHALLGENGAGKSTLMK-VLSGIHEPTKGTITINNI-NYNKLDHKLAAQLGIGII 85
Query: 664 VPQSSWIQTGTIRENILFG---------------KDMRQSFYEEVLEGCALNQDIEMWAD 708
+ S I T+ EN+ G ++MR +L L D++
Sbjct: 86 YQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVR-AAMMLLRVGLKVDLD---- 140
Query: 709 GDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL 768
E+ NLS KQ +++A+ + ++ V I D+P S++ +LF +M L
Sbjct: 141 -------EKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLF--LIMNQL 191
Query: 769 SQ--KTVLYTTHQL-EFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQM 818
+ ++Y +H+L E D VMKDG SG D+ N ++VR M
Sbjct: 192 RKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDV---SNDDIVRLM 241
|
Length = 510 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 6e-07
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 7/91 (7%)
Query: 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE--PSG- 1263
KIE+ +L V + VL G+ P ++G +GSGKSTL++ R++E P
Sbjct: 3 KIEIRDLKVSFGQV--EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEAR 60
Query: 1264 --GRILIDGVDISMIGLQDLRSRLSIIPQDP 1292
G + +DG DI + + +LR R+ ++ Q P
Sbjct: 61 VSGEVYLDGQDIFKMDVIELRRRVQMVFQIP 91
|
Length = 250 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 6e-07
Identities = 70/296 (23%), Positives = 117/296 (39%), Gaps = 38/296 (12%)
Query: 498 CSAIAFLFWASPTLVS-VITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMI 556
S + + A+P S ITFG L++ G V S+L+ F I N I
Sbjct: 302 LSVVLPILIAAPRYFSGQITFGG--LMQAVGAFGQVHSSLSWF------IDNYDA----I 349
Query: 557 AQTKVSLYRIQEFIKE-DNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLT 615
A + +L R+ EF + + + +P + D A + +++
Sbjct: 350 ADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGI------TLENLSLRTP 403
Query: 616 DKMKIMK--------GSKVAVCGSVGSGKSSLLSSILGEIPRISGA-AIKVHGKKAYVPQ 666
D ++ G ++ + G G+GK+SLL ++ G P SG ++ ++PQ
Sbjct: 404 DGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQ 463
Query: 667 SSWIQTGTIRENILF---GKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723
++ GT+RE + + D + VL L E L LSG
Sbjct: 464 RPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAE-----RLDEEDRWDRVLSG 518
Query: 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQ 779
G++QR+ AR + D+ SA+D T L+ Q L L TV+ H+
Sbjct: 519 GEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLY-QLLKEELPDATVISVGHR 573
|
Length = 604 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 6e-07
Identities = 43/140 (30%), Positives = 67/140 (47%), Gaps = 6/140 (4%)
Query: 674 TIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733
TI ++I+FG EE + A + IE+ D S + LSGGQK+R+ LA
Sbjct: 122 TIEKDIIFGPVSMGVSKEEAKKRAA--KYIEL-VGLDESYLQRSPFELSGGQKRRVALAG 178
Query: 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-KTVLYTTHQLE-FLDAADLVLV 791
+ D +FD+P + +D G + L Q KT++ TH L+ L+ +
Sbjct: 179 ILAMEPDFLVFDEPTAGLDPQ-GVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIF 237
Query: 792 MKDGKIEQSGKYEDLIADQN 811
KDGKI + G D+++D
Sbjct: 238 FKDGKIIKDGDTYDILSDNK 257
|
Length = 305 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 6e-07
Identities = 53/209 (25%), Positives = 99/209 (47%), Gaps = 38/209 (18%)
Query: 623 GSKVAVCGSVGSGKSSLLSSILGEIPR---ISGAAIKVHGKK----------AYVPQSS- 668
G +AV GS G+GK++L++++ P+ SG+ + ++G AYV Q
Sbjct: 51 GELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGS-VLLNGMPIDAKEMRAISAYVQQDDL 109
Query: 669 WIQTGTIRENILF----------GKDMRQSFYEEVLEGCALN--QDIEMWADGDLSVVGE 716
+I T T+RE+++F K ++ +EVL+ L + + G +
Sbjct: 110 FIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKG--- 166
Query: 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLY 775
LSGG+++R+ A + ++ + D+P S +D+ + Q L GL KT++
Sbjct: 167 ----LSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVV-QVLKGLAQKGKTIIC 221
Query: 776 TTHQ--LEFLDAADLVLVMKDGKIEQSGK 802
T HQ E + D +++M +G++ G
Sbjct: 222 TIHQPSSELFELFDKIILMAEGRVAYLGS 250
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 6e-07
Identities = 50/200 (25%), Positives = 86/200 (43%), Gaps = 36/200 (18%)
Query: 608 KKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK----VHGKKAY 663
K +K D + + A+ G G GKS+ L ++ I G I + G+ Y
Sbjct: 17 KFEALKGID-LDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIY 75
Query: 664 VPQSSWIQTG---------------TIRENILFG------KDMR--QSFYEEVLEGCALN 700
P +Q +I EN+++G KD E L+ A+
Sbjct: 76 APNEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIW 135
Query: 701 QDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLF 760
+++ + E ++LSGGQ+QR+ +AR + DV + D+P SA+D + T +
Sbjct: 136 DEVK-------DHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQI- 187
Query: 761 KQCLMGLLSQKTVLYTTHQL 780
+ L+ L Q T++ TH +
Sbjct: 188 ENMLLELRDQYTIILVTHSM 207
|
Length = 252 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (126), Expect = 7e-07
Identities = 58/219 (26%), Positives = 97/219 (44%), Gaps = 43/219 (19%)
Query: 623 GSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-------------KAYVPQSSW 669
G VA+ G G+GKS+LL ++ GE+ SG ++++G+ +A +PQ S
Sbjct: 28 GEVVAILGPNGAGKSTLLRALSGELSPDSGE-VRLNGRPLADWSPAELARRRAVLPQHSS 86
Query: 670 IQTG-TIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI-NLSGGQKQ 727
+ T+ E + G R E AL A DL+ + R LSGG++Q
Sbjct: 87 LSFPFTVEEVVAMG---RAPHGLSRAEDDALVA--AALAQVDLAHLAGRDYPQLSGGEQQ 141
Query: 728 RIQLARA-----VYSNSDVYIF-DDPFSAVD-AHTGTHLFKQCLMGLLSQKT------VL 774
R+QLAR ++ D+P SA+D AH + ++ L Q V+
Sbjct: 142 RVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAH------QHHVLRLARQLAHERGLAVI 195
Query: 775 YTTHQLEFLDA--ADLVLVMKDGKIEQSGKYEDLIADQN 811
H L L A AD ++++ G++ G +++ +
Sbjct: 196 VVLHDLN-LAARYADRIVLLHQGRLVADGTPAEVLTPET 233
|
Length = 258 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 8e-07
Identities = 54/230 (23%), Positives = 96/230 (41%), Gaps = 66/230 (28%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISG----AAIKVHGKK--------AYVP 665
+ + +GS V + G G+GK++LL +I G + +G A V A VP
Sbjct: 24 LSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVP 83
Query: 666 QSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEM-----------WADGDLSVV 714
Q + ++ F D+RQ +EM W + D + V
Sbjct: 84 QDT---------SLSFEFDVRQV--------------VEMGRTPHRSRFDTWTETDRAAV 120
Query: 715 GERGIN--------------LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLF 760
ER + LSGG++QR+ LARA+ + V + D+P +++D +
Sbjct: 121 -ERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTL 179
Query: 761 KQCLMGLLSQKTVLYTTHQLEFLDAA---DLVLVMKDGKIEQSGKYEDLI 807
+ + KT + H L+ AA D ++++ DG++ +G D++
Sbjct: 180 ELVRRLVDDGKTAVAAIHDLDL--AARYCDELVLLADGRVRAAGPPADVL 227
|
Length = 402 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 1e-06
Identities = 21/56 (37%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 1240 VVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLF 1295
++G TGSGKS L++ + ++P G+IL++G DI+ L + +S +PQ+ LF
Sbjct: 30 ILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDIT--NLPPEKRDISYVPQNYALF 83
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (124), Expect = 1e-06
Identities = 22/43 (51%), Positives = 35/43 (81%)
Query: 1240 VVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLR 1282
++G +GSGKST+++ L R++EP+ G++LIDGVDI+ I +LR
Sbjct: 59 IMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELR 101
|
Length = 400 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 1e-06
Identities = 47/179 (26%), Positives = 83/179 (46%), Gaps = 18/179 (10%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRE 677
+G +A+ G+ G+GKS+LL + G + R A+ + G+ + ++ R
Sbjct: 13 FAAERGEVLALLGANGAGKSTLLLHLNG-LLRPQSGAVLIDGEPLDYSRKGLLERRQ-RV 70
Query: 678 NILFGKDMRQSFYEEVLEGCA---LN-----QDIEMWADGDLSVVGERGIN------LSG 723
++F Q F +V + A LN ++E L+ VG G+ LSG
Sbjct: 71 GLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSG 130
Query: 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-KTVLYTTHQLE 781
G+K+R+ +A AV DV + D+P + +D G L L ++ TV+ +TH ++
Sbjct: 131 GEKKRVAIAGAVAMRPDVLLLDEPTAGLDP-AGREQMLAILRRLRAEGMTVVISTHDVD 188
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 1e-06
Identities = 61/221 (27%), Positives = 98/221 (44%), Gaps = 34/221 (15%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQS----SWIQTGTI 675
I G +A+ G GSGKS SILG +P S AA G + + S Q +
Sbjct: 33 IEAGETLALVGESGSGKSVTALSILGLLP--SPAAAHPSGSILFDGEDLLAASERQLRGV 90
Query: 676 REN---ILFGKDMR-----QSFYEEVLEGCALNQDI--EMWADGDLSVVGERGI------ 719
R N ++F + M + +++ E L++ + L ++ GI
Sbjct: 91 RGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKR 150
Query: 720 ------NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK-- 771
LSGGQ+QR+ +A A+ + D+ I D+P +A+D + L+ L +
Sbjct: 151 LDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILD--LLKELQAELG 208
Query: 772 -TVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDLIADQ 810
+L+ TH L + AD V VM+ G+I ++G E L A
Sbjct: 209 MAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFAAP 249
|
Length = 534 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 1e-06
Identities = 29/95 (30%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
I++ +L V++ T VL G+ + +G+VG G+GK+TL++A+ + P+ G +L
Sbjct: 4 IDVSDLSVEFGDT--TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVL 61
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPML-FQGTVRT 1301
+ G D+ + + R++ +PQD L F+ VR
Sbjct: 62 VAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQ 96
|
Length = 402 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 1e-06
Identities = 56/204 (27%), Positives = 91/204 (44%), Gaps = 37/204 (18%)
Query: 627 AVCGSVGSGKSSLLSSILGEIPRISGA----AIKVHGKKAYVPQSSWIQ----------- 671
A+ G G GKS+LL ++ +SGA A+ + + Y P +
Sbjct: 34 AIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQ 93
Query: 672 ----TGTIRENILFGKDM----RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723
+I +N+ FG M QS +EV+E +L Q +W D + + G+ LSG
Sbjct: 94 PNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEK-SLRQ-AALW-DEVKDNLHKSGLALSG 150
Query: 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLE-- 781
GQ+QR+ +AR + +V + D+P SA+D T ++ + L T+ TH ++
Sbjct: 151 GQQQRLCIARVLAIEPEVILMDEPCSALDP-VSTMRIEELMQELKQNYTIAIVTHNMQQA 209
Query: 782 --------FLDAADLVLVMKDGKI 797
FL DLV + G+I
Sbjct: 210 ARASDWTGFLLTGDLVEYGRTGEI 233
|
Length = 251 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 1e-06
Identities = 50/209 (23%), Positives = 95/209 (45%), Gaps = 38/209 (18%)
Query: 627 AVCGSVGSGKSSLL---SSILGEIP--RISGAAIKVHGKKAYVPQSSWIQTG-------- 673
A+ G G GKS+ L + + +I +I+G IK G+ Y + ++
Sbjct: 34 ALIGPSGCGKSTFLRCLNRMNDDIENIKITGE-IKFEGQNIYGSKMDLVELRKEVGMVFQ 92
Query: 674 -------TIRENILFG--------KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERG 718
++ +N+ +G K++ EE L+ A+ ++ + D +
Sbjct: 93 QPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQA----- 147
Query: 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTH 778
SGGQ+QRI +ARA+ V + D+P SA+D + + + ++ LM L Q T + TH
Sbjct: 148 --FSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEI-EETLMELKHQYTFIMVTH 204
Query: 779 QLEFLD-AADLVLVMKDGKIEQSGKYEDL 806
L+ +D + +G + ++G E++
Sbjct: 205 NLQQAGRISDQTAFLMNGDLIEAGPTEEM 233
|
Length = 251 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 2e-06
Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
+E+ N+ + + I+ + + ++G +G GK+TL++ + +PS G IL
Sbjct: 6 LEIRNVSKSFGDFT--AVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEIL 63
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLF 1295
+DG DI+ + + + ++ Q LF
Sbjct: 64 LDGEDIT--DVPPEKRPIGMVFQSYALF 89
|
Length = 352 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 2e-06
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 13/85 (15%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
I LENL + Y +L+ ++ T ++IG+VGR G+GKSTL++ L +EP G +
Sbjct: 4 ITLENLSLAYGDRP--LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVT 61
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDP 1292
R+ + Q+P
Sbjct: 62 RPKG-----------LRVGYLSQEP 75
|
Length = 530 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 2e-06
Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 8/103 (7%)
Query: 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILID------GVDISMIG 1277
+LK IT P G++G +GSGKSTL++ L R++E +I +D G DI I
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84
Query: 1278 LQDLRSRLSIIPQDPMLF-QGTVRTNLD-PLEQHSDQEIWEVK 1318
LR + ++ Q P F ++ N+ PL+ H +E E+K
Sbjct: 85 AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIK 127
|
Length = 257 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 2e-06
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 1207 KIELENLLVQYNPTLPMVLK---GITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG 1263
+I+++N++ +N LP LK ++ + I ++G+TGSGK+T I+ L ++ P
Sbjct: 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDT 61
Query: 1264 GRI 1266
G I
Sbjct: 62 GTI 64
|
Length = 305 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 48/194 (24%), Positives = 78/194 (40%), Gaps = 47/194 (24%)
Query: 623 GSKVAVCGSVGSGKSSLLSSILGEIP---RISG-----------AAIKVHGKKAYVPQSS 668
G V V G GSG S+LL ++ + G A K G+ YV +
Sbjct: 33 GEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEED 92
Query: 669 W-IQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727
T T+RE + F + G+ V RGI SGG+++
Sbjct: 93 VHFPTLTVRETLDFALRCK----------------------GNEFV---RGI--SGGERK 125
Query: 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCL--MGLLSQKTVLYTTHQ--LEFL 783
R+ +A A+ S + V +D+ +D+ T +C+ M + + T + +Q E
Sbjct: 126 RVSIAEALVSRASVLCWDNSTRGLDSST-ALEILKCIRTMADVLKTTTFVSLYQASDEIY 184
Query: 784 DAADLVLVMKDGKI 797
D D VLV+ +G+
Sbjct: 185 DLFDKVLVLYEGRQ 198
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 2e-06
Identities = 57/213 (26%), Positives = 94/213 (44%), Gaps = 37/213 (17%)
Query: 623 GSKVAVCGSVGSGKSSLLSSILGEIP--RISGAAIKVHGKKA--------YVPQSSWIQT 672
G +AV G GSGKS+LL+++ G I +G + + K +V Q +
Sbjct: 94 GEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYP 153
Query: 673 G-TIRENILF----------GKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGE---RG 718
T+RE ++F K + E V+ L + +++G RG
Sbjct: 154 HLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGL-------TKCENTIIGNSFIRG 206
Query: 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-KTVLYTT 777
I SGG+++R+ +A + N + I D+P S +DA T + L L + KT++ +
Sbjct: 207 I--SGGERKRVSIAHEMLINPSLLILDEPTSGLDA-TAAYRLVLTLGSLAQKGKTIVTSM 263
Query: 778 HQ--LEFLDAADLVLVMKDGKIEQSGKYEDLIA 808
HQ D VLV+ +G+ GK D +A
Sbjct: 264 HQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296
|
Length = 659 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 2e-06
Identities = 56/218 (25%), Positives = 98/218 (44%), Gaps = 38/218 (17%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSI-----LGEIPRISGAAIKVHGKKAY--------- 663
+KI+K S A+ G G GKS+ L ++ L E +I G I GK Y
Sbjct: 28 IKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVI-YEGKNIYSNNFDILEL 86
Query: 664 ------VPQSSWIQTGTIRENILFG------KDMRQ--SFYEEVLEGCALNQDIEMWADG 709
V Q+ +I +NI +G KD ++ E+ L+ AL +++
Sbjct: 87 RRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVK----- 141
Query: 710 DLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS 769
+ ++LSGGQ+QR+ +AR + +V + D+P SA+D T ++ ++ L
Sbjct: 142 --DKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDP-ISTGKIEELIINLKE 198
Query: 770 QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDL 806
T++ TH ++ +D +G IE+ ++L
Sbjct: 199 SYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL 236
|
Length = 254 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 2e-06
Identities = 60/221 (27%), Positives = 97/221 (43%), Gaps = 42/221 (19%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILG-EIP-----RISGAAIKVHGKKAYVPQSSWIQ 671
+ I GS A G GSGKS+++ + G +P R+ I K + Q
Sbjct: 28 LTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ----- 82
Query: 672 TGTIRENI--LFGKDMRQSFYEEVLEGCAL--------NQDIEMWADGDLSVVG------ 715
IR+ + +F Q F E VL+ A ++ E A L++VG
Sbjct: 83 ---IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLF 139
Query: 716 ERG-INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHL---FKQCLMGLLSQK 771
E+ LSGGQ +R+ +A + + + D+P + +D L FK+ L Q
Sbjct: 140 EKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKK-----LHQS 194
Query: 772 --TVLYTTHQL-EFLDAADLVLVMKDGKIEQSGKYEDLIAD 809
T++ TH + + + AD V V++ GK+ SGK +D+ D
Sbjct: 195 GMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQD 235
|
Length = 280 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 2e-06
Identities = 51/195 (26%), Positives = 85/195 (43%), Gaps = 43/195 (22%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSW-------- 669
M I + A+ G G GKS+ + L I + G +KV G + Q+ +
Sbjct: 28 MDIYRNKVTAIIGPSGCGKSTFIK-TLNRISELEGP-VKVEGVVDFFGQNIYDPRININR 85
Query: 670 --IQTG-----------TIRENILFGKDMRQS----------FYEEVLEGCALNQDIEMW 706
Q G +I EN+ +G +R S E L+G AL Q+++
Sbjct: 86 LRRQIGMVFQRPNPFPMSIYENVAYG--VRISAKLPQADLDEIVESALKGAALWQEVK-- 141
Query: 707 ADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMG 766
+ + + LSGGQ+QR+ +ARA+ V + D+P SA+D T ++ +
Sbjct: 142 -----DKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDP-IATMKVEELIHS 195
Query: 767 LLSQKTVLYTTHQLE 781
L S+ T+ TH ++
Sbjct: 196 LRSELTIAIVTHNMQ 210
|
Length = 259 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 2e-06
Identities = 49/222 (22%), Positives = 100/222 (45%), Gaps = 26/222 (11%)
Query: 610 PTIKLTDK--MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK------ 661
P +K D +K+ S A+ G G+GKS+LL + G + SG+ I GK+
Sbjct: 9 PGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGS-ILFQGKEIDFKSS 67
Query: 662 --------AYVPQS-SWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLS 712
+ V Q + + ++ +N+ G+ + + V + ++ + D+
Sbjct: 68 KEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMF--VDQDKMYRDTKAIFDELDID 125
Query: 713 V-VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK 771
+ + LS Q Q I++A+A N+ + I D+P S++ HLF ++ L ++
Sbjct: 126 IDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFT--IIRKLKER 183
Query: 772 --TVLYTTHQL-EFLDAADLVLVMKDGKIEQSGKYEDLIADQ 810
++Y +H++ E D + +++DG+ + L D+
Sbjct: 184 GCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLTMDK 225
|
Length = 491 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 2e-06
Identities = 45/178 (25%), Positives = 87/178 (48%), Gaps = 27/178 (15%)
Query: 627 AVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQS---SWIQTGTIRENI--LF 681
A+ G G GKS+ + ++ I + +K+ G+ Y + + +R+NI +F
Sbjct: 42 AIIGPSGCGKSTFIKTLNLMIQMVPN--VKLTGEMNYNGSNILKGKVDLVELRKNIGMVF 99
Query: 682 --GKDMRQSFYEEVLEGCALN----------------QDIEMWADGDLSVVGERGINLSG 723
G QS ++ V G ++ +D+ +W D + + ++LSG
Sbjct: 100 QKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALW-DEVKDRLHTQALSLSG 158
Query: 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLE 781
GQ+QR+ +ARA+ +N DV + D+P SA+D T ++ ++ L + T++ TH ++
Sbjct: 159 GQQQRLCIARALATNPDVLLMDEPTSALDP-VSTRKIEELILKLKEKYTIVIVTHNMQ 215
|
Length = 259 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.8 bits (120), Expect = 3e-06
Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 11/105 (10%)
Query: 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKI-GVVGRTGSGKSTLIQALFRVVEP-SG- 1263
IE+ +L + Y LK I P + K+ ++G +G GKSTL++ L R+ + G
Sbjct: 7 AIEVRDLNLYYGDKH--ALKDINLDIP-KNKVTALIGPSGCGKSTLLRCLNRMNDLIPGA 63
Query: 1264 ---GRILIDGVDI--SMIGLQDLRSRLSIIPQDPMLFQGTVRTNL 1303
G +L+DG +I + + +LR R+ ++ Q P F ++ N+
Sbjct: 64 RVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNV 108
|
Length = 253 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 3e-06
Identities = 52/216 (24%), Positives = 103/216 (47%), Gaps = 43/216 (19%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-------------AYVPQ 666
I KG ++ G G+GKS+LLS + + + SG I + G + + + Q
Sbjct: 24 IPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGE-ITIDGLELTSTPSKELAKKLSILKQ 82
Query: 667 SSWIQTG-TIRENILFGK----DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN- 720
+ I + T+R+ + FG+ R + + + +N+ IE L + +R ++
Sbjct: 83 ENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRI----INEAIEYL---HLEDLSDRYLDE 135
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQC--LMGLLSQ------KT 772
LSGGQ+QR +A + ++D + D+P + +D K +M +L + KT
Sbjct: 136 LSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLD-------MKHSVQIMKILRRLADELGKT 188
Query: 773 VLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLI 807
++ H + F +D ++ +K+GK+ + G +++I
Sbjct: 189 IVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEII 224
|
Length = 252 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (120), Expect = 3e-06
Identities = 40/147 (27%), Positives = 73/147 (49%), Gaps = 6/147 (4%)
Query: 674 TIRENILFGKDMRQSFYEEVLEGCALNQ--DIEMWADGDLSVVGERGINLSGGQKQRIQL 731
+I +N+L G + + G A + ++ +W D + + LSGGQ+Q + L
Sbjct: 116 SIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLW-DAVKDRLSDSPFRLSGGQQQLLCL 174
Query: 732 ARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQL-EFLDAADLVL 790
AR + N +V + D+P SA+D T T ++ + L + TV+ TH L + +D
Sbjct: 175 ARTLAVNPEVLLLDEPTSALDP-TTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAA 233
Query: 791 VMKDGKIEQSGKYEDLIAD-QNSELVR 816
+ DG++ + G E L + +++E R
Sbjct: 234 LFFDGRLVEEGPTEQLFSSPKHAETAR 260
|
Length = 276 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 3e-06
Identities = 53/187 (28%), Positives = 82/187 (43%), Gaps = 46/187 (24%)
Query: 627 AVCGSVGSGKSSLLSSI-----LGEIPRISGAAIKVHGKKAY----VPQSSWIQTG---- 673
A+ G G GKS+LL + L E +I+G + + G+ Y V I+ G
Sbjct: 33 ALIGPSGCGKSTLLRCLNRMNDLIEGVKITGK-LTMDGEDIYGNIDVADLR-IKVGMVFQ 90
Query: 674 -------TIRENILFG------KDMR--QSFYEEVLEGCALNQDIEMWADGDLSVVGER- 717
+I EN+ +G KD + E L G AL W + V +R
Sbjct: 91 KPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAAL------WDE-----VKDRL 139
Query: 718 ---GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVL 774
LSGGQ+QR+ +AR + DV + D+P SA+D TH ++ + L T++
Sbjct: 140 KSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDP-IATHKIEELMEELKKNYTIV 198
Query: 775 YTTHQLE 781
TH ++
Sbjct: 199 IVTHSMQ 205
|
Length = 249 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 3e-06
Identities = 25/90 (27%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 1208 IELENLLVQY----NPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG 1263
I+ +N+ +Y T + L + + + ++GR GSGKST+ + + ++ PS
Sbjct: 5 IKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSE 64
Query: 1264 GRILIDGVDISMIG-LQDLRSRLSIIPQDP 1292
G++ +DG+D S L D+R++ ++ Q+P
Sbjct: 65 GKVYVDGLDTSDEENLWDIRNKAGMVFQNP 94
|
Length = 280 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (119), Expect = 3e-06
Identities = 57/193 (29%), Positives = 87/193 (45%), Gaps = 39/193 (20%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLL------------SSILGEIPRISGAAIKVHGKK---- 661
M+I + S VA G G GKS+ L + + GEI RI G I G +
Sbjct: 24 MEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEI-RIDGRNIYDKGVQVDEL 82
Query: 662 ----AYVPQSSWIQTGTIRENILFG------KD---MRQSFYEEVLEGCALNQDIEMWAD 708
V Q +I EN+ +G KD +RQ EE L+G AL +++
Sbjct: 83 RKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRV-EETLKGAALWDEVK---- 137
Query: 709 GDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL 768
+ E LSGGQ+QR+ +ARA+ + V + D+P SA+D T ++ + L
Sbjct: 138 ---DKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDP-ISTAKVEELIHELK 193
Query: 769 SQKTVLYTTHQLE 781
T++ TH ++
Sbjct: 194 KDYTIVIVTHNMQ 206
|
Length = 250 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 3e-06
Identities = 52/207 (25%), Positives = 88/207 (42%), Gaps = 42/207 (20%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-----------------A 662
+ +G VA+ G GSGKS+LL+ +L + S +++ G+
Sbjct: 33 VKRGETVAIVGPSGSGKSTLLA-VLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVG 91
Query: 663 YVPQS-SWIQTGTIRENI-----LFGKDMRQSFY--EEVLEGCALNQDIEMWADGDLSVV 714
+V QS I T EN+ L G+ S + +LE L + + +
Sbjct: 92 FVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPA------ 145
Query: 715 GERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--- 771
LSGG++QR+ LARA DV D+P +D TG + L+ L+++
Sbjct: 146 -----QLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIAD--LLFALNRERGT 198
Query: 772 TVLYTTHQLEFLDAADLVLVMKDGKIE 798
T++ TH + D L ++ G++
Sbjct: 199 TLVLVTHDPQLAARCDRQLRLRSGRLV 225
|
Length = 228 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 49.4 bits (119), Expect = 3e-06
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQ-DLR 1282
L ++ + + G++G G+GK+TL + + P+ G +L DG DI+ GL
Sbjct: 15 ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDIT--GLPPHEI 72
Query: 1283 SRLSIIP--QDPMLFQG-TVRTNL 1303
+RL I Q P LF TV N+
Sbjct: 73 ARLGIGRTFQIPRLFPELTVLENV 96
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 4e-06
Identities = 19/45 (42%), Positives = 30/45 (66%)
Query: 1238 IGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLR 1282
++G +GSGKST ++ L R++EP+ G+I IDG +I +LR
Sbjct: 22 FVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELR 66
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 4e-06
Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 9/103 (8%)
Query: 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE--PS-- 1262
IE+ENL + Y LK I P + ++G +G GKSTL+++L R+ + P
Sbjct: 1 AIEIENLNLFYGEK--EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVR 58
Query: 1263 -GGRILIDGVDI--SMIGLQDLRSRLSIIPQDPMLFQGTVRTN 1302
G++L DG DI I + +LR R+ ++ Q P F ++ N
Sbjct: 59 IEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDN 101
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 4e-06
Identities = 57/203 (28%), Positives = 85/203 (41%), Gaps = 40/203 (19%)
Query: 608 KKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAY---- 663
KK IK D M+ K A+ G GSGKS+ L S+ I A +V G+ Y
Sbjct: 32 KKEAIKGID-MQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIA--RVTGQILYRGID 88
Query: 664 -----------------VPQSSWIQTGTIRENILFG------KDMRQ--SFYEEVLEGCA 698
V Q +I ENI F KD + E L+ A
Sbjct: 89 INRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAA 148
Query: 699 LNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTH 758
L ++ DL + + LSGGQ+QR+ +ARA+ D+ + D+P SA+D T
Sbjct: 149 LWDQVK----DDL---HKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDP-ISTM 200
Query: 759 LFKQCLMGLLSQKTVLYTTHQLE 781
++ + L T++ TH ++
Sbjct: 201 QLEETMFELKKNYTIIIVTHNMQ 223
|
Length = 267 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 4e-06
Identities = 54/207 (26%), Positives = 87/207 (42%), Gaps = 40/207 (19%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIR--- 676
I +G +A+ GS GSGKS+LL +LG + + + +G+ + + S +R
Sbjct: 32 IGEGEMMAIVGSSGSGKSTLLH-LLGGLDTPTSGDVIFNGQP--MSKLSSAAKAELRNQK 88
Query: 677 -----------------ENI----LFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVG 715
EN+ L GK LE A A G
Sbjct: 89 LGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLA--------AVGLEHRAN 140
Query: 716 ERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK---T 772
R LSGG++QR+ +ARA+ +N + + D+P +DA +F+ L+G L++
Sbjct: 141 HRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQ--LLGELNRLQGTA 198
Query: 773 VLYTTHQLEFLDAADLVLVMKDGKIEQ 799
L TH L+ L M+DG++
Sbjct: 199 FLVVTHDLQLAKRMSRQLEMRDGRLTA 225
|
Length = 233 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 5e-06
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 8/85 (9%)
Query: 1224 VLKGITCTF-PGEKKIGVVGRTGSGKSTLIQAL--FRVVEPSGGRILIDGVDISMIGLQD 1280
+LK ++ PGE ++G +G+GKSTL+ AL R G +LI+G + +
Sbjct: 24 LLKNVSGKAKPGEL-TAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLD---KRS 79
Query: 1281 LRSRLSIIPQDPMLF-QGTVRTNLD 1304
R + +PQD +L TVR L
Sbjct: 80 FRKIIGYVPQDDILHPTLTVRETLM 104
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 5e-06
Identities = 16/55 (29%), Positives = 33/55 (60%)
Query: 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGL 1278
LK I+ +++G++G G+GKSTL++ + + +P+ G++ + G +I L
Sbjct: 42 ALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIEL 96
|
Length = 249 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (119), Expect = 5e-06
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 5/95 (5%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1266
+E NL V+ +L ++ T PGE + ++G G+GKSTL++AL + P G +
Sbjct: 3 LEARNLSVRLGGRT--LLDDVSLTLRPGEV-VAILGPNGAGKSTLLRALSGELSPDSGEV 59
Query: 1267 LIDGVDISMIGLQDLRSRLSIIPQDPML-FQGTVR 1300
++G ++ +L R +++PQ L F TV
Sbjct: 60 RLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVE 94
|
Length = 258 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 5e-06
Identities = 57/202 (28%), Positives = 86/202 (42%), Gaps = 50/202 (24%)
Query: 623 GSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKA-YVPQSSWI-QTGTIRENIL 680
G+K+ V G G+GKS+LL + G +G A G K Y+PQ + T T+REN+
Sbjct: 31 GAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPTKTVRENVE 90
Query: 681 FG----KDMRQSFYE-----------------------EVLEGCA---LNQDIEMWAD-- 708
G KD F E E+++ L++ +E+ D
Sbjct: 91 EGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL 150
Query: 709 ----GDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHL--FKQ 762
D V LSGG+++R+ L R + S D+ + D+P + +DA + L Q
Sbjct: 151 RCPPWDADVT-----KLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQ 205
Query: 763 CLMGLLSQKTVLYTTHQLEFLD 784
G TV+ TH FLD
Sbjct: 206 EYPG-----TVVAVTHDRYFLD 222
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 6e-06
Identities = 52/216 (24%), Positives = 91/216 (42%), Gaps = 35/216 (16%)
Query: 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA----IKVHGKKA--------------- 662
+G A+ G GSGKS+L+ +I + +G I + K
Sbjct: 32 QGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVF 91
Query: 663 YVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722
P+S + RE I+FG ++F + E + M V+ + +S
Sbjct: 92 QFPESQLFEDTVERE-IIFGP---KNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMS 147
Query: 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ------KTVLYT 776
GGQ ++I + + N D+ + D+P + +D + K+ +M LL KT++
Sbjct: 148 GGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQS-----KRQVMRLLKSLQTDENKTIILV 202
Query: 777 THQL-EFLDAADLVLVMKDGKIEQSGKYEDLIADQN 811
+H + E AD V+VMK+G I ++L D+
Sbjct: 203 SHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDKK 238
|
Length = 286 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 7e-06
Identities = 19/89 (21%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1266
+E+E + + VL+ I + + + ++G +G GKSTL++ + + +P+ G +
Sbjct: 3 LLEIEGVSKSFGGVE--VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV 60
Query: 1267 LIDGVDISMIGLQDLRSRLSIIPQDPMLF 1295
L+DG + + + Q+ L
Sbjct: 61 LLDG-----RPVTGPGPDIGYVFQEDALL 84
|
Length = 248 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 7e-06
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
+ L+ + Y PM TF + +VG +GSGKSTL+ + P GR+L
Sbjct: 1 VRLDKIRFSYG-EQPMHF---DLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVL 56
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLFQG-TVRTNLD 1304
I+GVD + +S++ Q+ LF TV N+
Sbjct: 57 INGVD--VTAAPPADRPVSMLFQENNLFAHLTVEQNVG 92
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 7e-06
Identities = 22/68 (32%), Positives = 37/68 (54%)
Query: 1225 LKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSR 1284
+K ++ T + + ++G GSGKSTL + L ++EP+ G ILI+ + R
Sbjct: 29 VKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKR 88
Query: 1285 LSIIPQDP 1292
+ +I QDP
Sbjct: 89 IRMIFQDP 96
|
Length = 267 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 7e-06
Identities = 21/68 (30%), Positives = 38/68 (55%)
Query: 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRS 1283
++ G+ T P G++G GSGKSTL++ L + P G + + GVD+ + +
Sbjct: 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARAR 75
Query: 1284 RLSIIPQD 1291
R++++ QD
Sbjct: 76 RVALVEQD 83
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 8e-06
Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 5/97 (5%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
IE+ N+ ++ L + P + ++G +GSGKSTL++ + + +P GRI
Sbjct: 1 IEIANISKRFGSF--QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIR 58
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLFQG-TVRTNL 1303
++G D + + +D ++ + Q LF+ TVR N+
Sbjct: 59 LNGQDATRVHARD--RKIGFVFQHYALFKHLTVRDNI 93
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 8e-06
Identities = 47/211 (22%), Positives = 93/211 (44%), Gaps = 20/211 (9%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIREN 678
++ +GS VA+ G GSGKS+L+ + SG I + G P++ +R+
Sbjct: 29 ELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGT-ITIAGYHI-TPETGNKNLKKLRKK 86
Query: 679 I--LFGKDMRQSFYEEVLEGC-------------ALNQDIEMWADGDLS--VVGERGINL 721
+ +F Q F VL+ A + ++ LS ++ + L
Sbjct: 87 VSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFEL 146
Query: 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQL- 780
SGGQ +R+ +A + ++ D+P + +D + + + TV+ TH +
Sbjct: 147 SGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD 206
Query: 781 EFLDAADLVLVMKDGKIEQSGKYEDLIADQN 811
+ + AD VLV++ GK+ + +++ +D+
Sbjct: 207 DVAEYADDVLVLEHGKLIKHASPKEIFSDKE 237
|
Length = 287 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 8e-06
Identities = 29/64 (45%), Positives = 39/64 (60%), Gaps = 4/64 (6%)
Query: 1232 FPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG---LQDLRSRLSII 1288
+PGE + +VG +GSGKST +AL R+VE GG I+ +G I + LQ LR + I
Sbjct: 348 WPGET-LSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFI 406
Query: 1289 PQDP 1292
QDP
Sbjct: 407 FQDP 410
|
Length = 623 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (116), Expect = 9e-06
Identities = 60/242 (24%), Positives = 101/242 (41%), Gaps = 46/242 (19%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI--------------------KV 657
+ K V G+ GSGKS+++ G I +G I K
Sbjct: 32 LTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKE 91
Query: 658 HGKKAYVPQSSWIQTGTIRENILFGK----DMRQSFYEEVLEGCALNQDIEMWADGDLSV 713
G P+ Q TI ++I FG + +Q Y++V E L Q E +
Sbjct: 92 IGLVFQFPEYQLFQE-TIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVK----- 145
Query: 714 VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--K 771
LSGGQK+R+ LA + + + + D+P +D G F L + K
Sbjct: 146 --RSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDP-KGEEDFINLFERLNKEYKK 202
Query: 772 TVLYTTHQL-EFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNP 830
++ TH + + L AD V+VM +GK+ G ++ ++Q EL+ ++ +++P
Sbjct: 203 RIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFSNQ--ELLTKI--------EIDP 252
Query: 831 PQ 832
P+
Sbjct: 253 PK 254
|
Length = 289 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 1e-05
Identities = 24/100 (24%), Positives = 49/100 (49%), Gaps = 7/100 (7%)
Query: 1210 LENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILID 1269
L+N+ ++ + +L + T K ++G +GSGKSTL+ + + + G++ ++
Sbjct: 1 LKNISKKFGDKV--ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLN 58
Query: 1270 GVDISMIGLQD----LRSRLSIIPQDPMLFQG-TVRTNLD 1304
G + + + R +L + Q+ L + TV NLD
Sbjct: 59 GQETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLD 98
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 1e-05
Identities = 31/106 (29%), Positives = 61/106 (57%), Gaps = 6/106 (5%)
Query: 1225 LKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDL--- 1281
L ++ P + GV+G +G+GKSTLI+ + + P+ G +++DG D++ + +L
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80
Query: 1282 RSRLSIIPQD-PMLFQGTVRTNLD-PLE-QHSDQEIWEVKISKLLT 1324
R ++ +I Q +L TV N+ PLE ++ ++ + K+++LL
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLA 126
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 1e-05
Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI- 1266
IELENL Y L +LK I+ T +IG+VGR G+GKSTL++ + +EP G +
Sbjct: 1 IELENLSKTYGGKL--LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVT 58
Query: 1267 LIDGVDIS 1274
V I
Sbjct: 59 WGSTVKIG 66
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 1e-05
Identities = 25/87 (28%), Positives = 50/87 (57%), Gaps = 3/87 (3%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
IE+ENL+ +Y ++G++ + G++G G+GK+T I+ L +++P+ GR
Sbjct: 1 IEVENLVKKYGDFE--AVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRAT 58
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPML 1294
+ G D+ +++R R+ I+ QD +
Sbjct: 59 VAGHDVVR-EPREVRRRIGIVFQDLSV 84
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 1e-05
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDG--VDISMIGLQDL 1281
VLKG+ F G+VG G GKSTL L ++ P G +L G +D S GL L
Sbjct: 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLAL 75
Query: 1282 RSRLSIIPQDP 1292
R +++ + QDP
Sbjct: 76 RQQVATVFQDP 86
|
Length = 271 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 1e-05
Identities = 56/210 (26%), Positives = 94/210 (44%), Gaps = 45/210 (21%)
Query: 623 GSKVAVCGSVGSGKSSLLSSI-LGEIPR-----ISGAAI---KVHGKKA---------YV 664
G + + G G+GKSSLL + L E+PR I+G K KA V
Sbjct: 28 GETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMV 87
Query: 665 PQSS--WIQTGTIRENIL--------FGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVV 714
Q W T++EN++ KD + E++L+ L + +
Sbjct: 88 FQQYNLWPHL-TVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYP------- 139
Query: 715 GERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--T 772
++LSGGQ+QR+ +ARA+ V +FD+P +A+D + ++ L++ T
Sbjct: 140 ----LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVS--IIKELAETGIT 193
Query: 773 VLYTTHQLEFL-DAADLVLVMKDGKIEQSG 801
+ TH++E A V+ M++G I + G
Sbjct: 194 QVIVTHEVEVARKTASRVVYMENGHIVEQG 223
|
Length = 242 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 1e-05
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 1225 LKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRS- 1283
+K ++ T + + ++G GSGKSTL + L ++EP+ G +LID + G RS
Sbjct: 29 VKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHF-GDYSYRSQ 87
Query: 1284 RLSIIPQDP 1292
R+ +I QDP
Sbjct: 88 RIRMIFQDP 96
|
Length = 267 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 1e-05
Identities = 58/229 (25%), Positives = 100/229 (43%), Gaps = 52/229 (22%)
Query: 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKA------------------- 662
G A+ G G+GKS+LL IL + +I + G++
Sbjct: 29 AGQVHALMGENGAGKSTLLK-ILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQE 87
Query: 663 --YVPQSSWIQTGTIRENILFGK--------DMRQSFYEEVLEGCALNQDIEMWADGDLS 712
VP+ T+ EN+ G+ + R YE + L DI D D
Sbjct: 88 LHLVPEM------TVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDI----DPDTP 137
Query: 713 VVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-- 770
+ LS GQ+Q +++A+A+ N+ V FD+P S++ A LF+ ++ L
Sbjct: 138 LK-----YLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFR--VIRELRAEG 190
Query: 771 KTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIADQNSELVRQM 818
+ +LY +H++E + A D + V KDG+ + ++D+ +LV+ M
Sbjct: 191 RVILYVSHRMEEIFALCDAITVFKDGRYVAT--FDDMAQVDRDQLVQAM 237
|
Length = 501 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 1e-05
Identities = 48/192 (25%), Positives = 83/192 (43%), Gaps = 37/192 (19%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSI-----LGEIPRISGAAIKVHGKKAY--------- 663
+ I + A+ G G GKS+ L + L +I G + + GK Y
Sbjct: 25 LPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGE-VLLDGKNIYDKDVDVVEL 83
Query: 664 ------VPQSSWIQTGTIRENILFG------KDMRQ--SFYEEVLEGCALNQDIEMWADG 709
V Q +I +N+ +G KD ++ E L+ AL +++
Sbjct: 84 RKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVK----D 139
Query: 710 DLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS 769
DL + + LSGGQ+QR+ +AR + DV + D+P SA+D T + ++ L
Sbjct: 140 DLK---KSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDP-ISTLKIEDLMVELKK 195
Query: 770 QKTVLYTTHQLE 781
+ T++ TH ++
Sbjct: 196 EYTIVIVTHNMQ 207
|
Length = 251 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 25/99 (25%), Positives = 51/99 (51%), Gaps = 2/99 (2%)
Query: 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQ 779
LSGGQ+QR+ +ARA+ + + D+P SA+D T++ + + L T++ TH
Sbjct: 149 ELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDP-VATNVIENLIQELKKNFTIIVVTHS 207
Query: 780 L-EFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
+ + +D V + G+I + +++ + S ++
Sbjct: 208 MKQAKKVSDRVAFFQSGRIVEYNTTQEIFKNPQSSKTKR 246
|
Length = 251 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 1e-05
Identities = 75/406 (18%), Positives = 130/406 (32%), Gaps = 45/406 (11%)
Query: 933 FIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCST 992
F L + F +G + A + L + + + API D + ++ +
Sbjct: 59 FGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTH 118
Query: 993 DQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPL--FLVILGISIWYQAYYITT 1050
D + + +A AL I ++ + +F + +I+G + A+
Sbjct: 119 DIDQI-NAFLFIFPPIAIALAIFFFCIAYLAYLSVPMFAITISAIIIGTAAQLLAF---- 173
Query: 1051 ARELARMVGTRKAPIL-----HHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSC-VTF 1104
+ A H GA ++ +H I + + +
Sbjct: 174 ---MGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSF--AHGAIQESANNIAD 228
Query: 1105 HNCGTMEWLCLRINLLFNFAFFLVLIILVTLPR--SAIDPSLAGLAATYGLNLNVLQ--- 1159
+ + N FFL++ + ++ID AA L +L
Sbjct: 229 LHIIEILIFIAAENF-GQLLFFLLIGCALFAAAMFASIDA-----AAISAFVLALLYIKG 282
Query: 1160 --AWVIWNLCNVENKMISVERILQFT---NIPSEAPLVIKNSRPSPEWP--SSGKIELEN 1212
++ L + I+ +R+ F N P + S IEL++
Sbjct: 283 PLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKD 342
Query: 1213 LLVQYNP-----TLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
V NP + L I + +VG G GKSTL + + P G IL
Sbjct: 343 --VHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEIL 400
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQE 1313
+DG +S D R S I D LF + D E S
Sbjct: 401 LDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGP--DEGEHASLDN 444
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 2e-05
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 6/96 (6%)
Query: 1172 KMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGK-IELENLLVQYNPTLPMVLKGITC 1230
K+ + + P E + P P +E EN+ Y+ +LK ++
Sbjct: 289 KLEARLAEER----PVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGGRL-LLKDLSF 343
Query: 1231 TFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1266
+I +VG G+GKSTL++ L + P G +
Sbjct: 344 RIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV 379
|
Length = 530 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 2e-05
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 8/89 (8%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
IE N+ Y P L ++ + + + G +G+GK+TL++ L+ + PS G++
Sbjct: 2 IEFHNVSKAY-PGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVR 60
Query: 1268 IDGVDISMIGLQD-----LRSRLSIIPQD 1291
I G D++ L+ LR R+ ++ QD
Sbjct: 61 IAGEDVNR--LRGRQLPLLRRRIGVVFQD 87
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 47.0 bits (113), Expect = 2e-05
Identities = 42/218 (19%), Positives = 89/218 (40%), Gaps = 35/218 (16%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI----KVHGKKAY------------ 663
+ G + G G+GK++L + I G + SG+ + + G +
Sbjct: 23 VRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQ 82
Query: 664 VPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVG------ER 717
+P+ T+ EN++ R + ++ A+ L VG
Sbjct: 83 IPRL--FPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRP 140
Query: 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPF---SAVDAHTGTHLFKQCLMGLLSQK--T 772
LS GQ++R+++ARA+ ++ + + D+P + + L ++ L ++ T
Sbjct: 141 AGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRE-----LRERGIT 195
Query: 773 VLYTTHQLEF-LDAADLVLVMKDGKIEQSGKYEDLIAD 809
VL H ++ + AD V V+ G++ G +++ +
Sbjct: 196 VLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNN 233
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 6/81 (7%)
Query: 1225 LKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG----LQD 1280
+ + F K +VG+TGSGKSTLIQ + +++P+ G + +D + I+ ++
Sbjct: 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82
Query: 1281 LRSRLSIIPQDP--MLFQGTV 1299
+R R+ ++ Q P LF+ TV
Sbjct: 83 VRKRIGMVFQFPESQLFEDTV 103
|
Length = 286 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 2e-05
Identities = 21/100 (21%), Positives = 50/100 (50%), Gaps = 5/100 (5%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK---TVLYTT 777
L+GG ++R+++ARA+ + + D+P +D + + + L++ +VL+ T
Sbjct: 133 LNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAH--VRALARDQGLSVLWAT 190
Query: 778 HQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
H ++ ++A D ++V+ G++ G +L +
Sbjct: 191 HLVDEIEADDRLVVLHRGRVLADGAAAELRGATGGADLEA 230
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 9/108 (8%)
Query: 1203 PSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRV---- 1258
S K+E L Y L I+ F + ++G +G GKST ++ L R+
Sbjct: 2 ASPPKMEARGLSFFYGDFQ--ALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLI 59
Query: 1259 -VEPSGGRILIDGVDI--SMIGLQDLRSRLSIIPQDPMLFQGTVRTNL 1303
G IL+DG +I + + +LR R+ ++ Q P F ++ N+
Sbjct: 60 PGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENV 107
|
Length = 253 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 2e-05
Identities = 22/64 (34%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTT 777
G++LSGGQ+QR+ +ARA+ + +V + D+P SA+D T ++ ++ L T+ T
Sbjct: 147 GLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDP-IATRRVEELMVELKKDYTIALVT 205
Query: 778 HQLE 781
H ++
Sbjct: 206 HNMQ 209
|
Length = 261 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRS 1283
+L ++ TFP K G++G GSGKSTL++ L R PS G IL+D + +
Sbjct: 26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFAR 85
Query: 1284 RLSIIPQDPMLFQG-TVR 1300
+++ +PQ +G TVR
Sbjct: 86 KVAYLPQQLPAAEGMTVR 103
|
Length = 265 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 2e-05
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 1225 LKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDI---SMIGLQDL 1281
L G++ T K + VVG +G GKSTL + L + P+GG + G D+ + L
Sbjct: 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLL 90
Query: 1282 RSRLSIIPQDP 1292
R ++ I+ Q+P
Sbjct: 91 RQKIQIVFQNP 101
|
Length = 327 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 2e-05
Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 9/96 (9%)
Query: 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRV--VEPSG- 1263
K++LE L V + +K ++ FP ++G +G GKST+++++ R+ + PS
Sbjct: 4 KVKLEQLNVHFGKN--HAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSAR 61
Query: 1264 --GRILIDGVDISMIGLQ--DLRSRLSIIPQDPMLF 1295
G+IL+D DI G+ +R R+ ++ Q P F
Sbjct: 62 VTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPF 97
|
Length = 252 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 2e-05
Identities = 43/189 (22%), Positives = 86/189 (45%), Gaps = 34/189 (17%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLL---SSILGEIPRISGAAIKVHGKK------------- 661
M+I + A+ G+ G GKS+ L + + +I +I G +++ GK
Sbjct: 23 MQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGL-VEIEGKDVKNQDVVALRKNV 81
Query: 662 AYVPQSSWIQTGTIRENILFG---------KDMRQSFYEEVLEGCALNQDIEMWADGDLS 712
V Q + +I ENI + KD ++ + L+ L ++++
Sbjct: 82 GMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVK-------D 134
Query: 713 VVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKT 772
+ + + LSGGQ+QR+ +ARA+ + + D+P SA+D + + ++ L L +
Sbjct: 135 KLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDP-ISSGVIEELLKELSHNLS 193
Query: 773 VLYTTHQLE 781
++ TH ++
Sbjct: 194 MIMVTHNMQ 202
|
Length = 246 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 3e-05
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 9/101 (8%)
Query: 1208 IELENLLVQYNPTLPM---VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGG 1264
I + + +Y P L + + P + ++G TGSGKSTL+Q L +++P+ G
Sbjct: 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSG 62
Query: 1265 RILIDGVDISM----IGLQDLRSRLSIIPQDP--MLFQGTV 1299
+ I I+ L+ LR ++ I+ Q P LF+ TV
Sbjct: 63 TVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETV 103
|
Length = 290 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 3e-05
Identities = 54/205 (26%), Positives = 89/205 (43%), Gaps = 39/205 (19%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIREN 678
I KG V + G G+GKS+LL I GE R + I V+G + + + +R
Sbjct: 24 HIPKGEFVFLTGPSGAGKSTLLKLIYGEE-RPTRGKILVNGHD--LSRLKGREIPFLRRQ 80
Query: 679 I--LFGKD----MRQSFYEEV--------LEGCALNQDIEMWADGDLSVVGERG------ 718
I +F +D ++ YE V + + + L +VG +
Sbjct: 81 IGVVF-QDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSE----VLDLVGLKHKARALP 135
Query: 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-----KTV 773
LSGG++QR+ +ARA+ + V + D+P +D +M L + TV
Sbjct: 136 SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWE-----IMRLFEEINRLGTTV 190
Query: 774 LYTTHQLEFLDAADL-VLVMKDGKI 797
L TH LE ++ VL ++DG++
Sbjct: 191 LMATHDLELVNRMRHRVLALEDGRL 215
|
Length = 223 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 3e-05
Identities = 45/183 (24%), Positives = 80/183 (43%), Gaps = 37/183 (20%)
Query: 627 AVCGSVGSGKSSLLSSI-----LGEIPRISGAAIKVHGKKAYVPQSSWIQ---------- 671
A+ G G GKS+ L + L R+ G I + G+ Y P ++
Sbjct: 36 ALIGPSGCGKSTFLRCLNRMNDLIPGARVEGE-ILLDGENIYDPHVDVVELRRRVGMVFQ 94
Query: 672 -----TGTIRENILFG---KDMRQSFY-----EEVLEGCALNQDIEMWADGDLSVVGERG 718
+I EN+ +G ++ Y E L AL +++ + E
Sbjct: 95 KPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK-------DRLHESA 147
Query: 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTH 778
+ LSGGQ+QR+ +ARA+ +V + D+P SA+D T ++ + L ++ T++ TH
Sbjct: 148 LGLSGGQQQRLCIARALAVEPEVLLMDEPASALDP-IATQKIEELIHELKARYTIIIVTH 206
Query: 779 QLE 781
++
Sbjct: 207 NMQ 209
|
Length = 253 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 3e-05
Identities = 60/229 (26%), Positives = 92/229 (40%), Gaps = 44/229 (19%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQ----------- 666
+ + +G A+ G G GK++LL I G+I G I G+ +P
Sbjct: 28 LTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGE-ILFDGEN--IPAMSRSRLYTVRK 84
Query: 667 --SSWIQTG------TIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERG 718
S Q+G + +N+ + +L + + L VG RG
Sbjct: 85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMK---------LEAVGLRG 135
Query: 719 I------NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK- 771
LSGG +R LARA+ D+ +FD+PF D T L K L+ L+
Sbjct: 136 AAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVK--LISELNSAL 193
Query: 772 --TVLYTTHQL-EFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
T + +H + E L AD ++ D KI G + L A+ + VRQ
Sbjct: 194 GVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQANPDPR-VRQ 241
|
Length = 269 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 3e-05
Identities = 45/191 (23%), Positives = 83/191 (43%), Gaps = 35/191 (18%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISG----AAIKVHGKKAYVPQSSWIQ-- 671
+ I K S A+ G G GKS+ + ++ I G I + G Y P ++
Sbjct: 24 LDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELR 83
Query: 672 -------------TGTIRENILFG--------KDMRQSFYEEVLEGCALNQDIEMWADGD 710
+I +N+ +G +D + EE L+ AL +++ D
Sbjct: 84 KKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLD-- 141
Query: 711 LSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ 770
+ + LSGGQ+QR+ +AR + + +V + D+P SA+D + T + + + L
Sbjct: 142 -----KSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKI-EDLIHKLKED 195
Query: 771 KTVLYTTHQLE 781
T++ TH ++
Sbjct: 196 YTIVIVTHNMQ 206
|
Length = 250 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 3e-05
Identities = 46/159 (28%), Positives = 69/159 (43%), Gaps = 34/159 (21%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK----VHGKKAYVPQSSWIQT--- 672
I +G A+ G G GKS++L S+ I G ++K G Y P+ ++
Sbjct: 36 IPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRR 95
Query: 673 ------------GTIRENILFGK-------DMRQSFYEEVLEGCALNQDIEMWADGDLSV 713
+I ENI FG DM + E L A+ W D
Sbjct: 96 IGMVFQQPNPFPKSIYENIAFGARINGYTGDMDE-LVERSLRKAAV------W-DECKDK 147
Query: 714 VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVD 752
+ E G +LSGGQ+QR+ +AR + +V + D+P SA+D
Sbjct: 148 LNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALD 186
|
Length = 269 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 3e-05
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 1232 FPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG---LQDLRSRLSII 1288
+ GE +GVVG +G GKST +A+ +V+ + G + G D+ + + +RS + +I
Sbjct: 45 YEGET-LGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMI 103
Query: 1289 PQDPM 1293
QDP+
Sbjct: 104 FQDPL 108
|
Length = 331 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 4e-05
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 1238 IGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDIS 1274
+G+VG +G GKSTL + + + EP+ G IL +G DI+
Sbjct: 42 LGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDIT 78
|
Length = 268 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 4e-05
Identities = 56/220 (25%), Positives = 93/220 (42%), Gaps = 37/220 (16%)
Query: 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-------------AYVPQSS 668
G A+ G G GKS+LL + SG + + K A +PQ
Sbjct: 27 TGKITALIGPNGCGKSTLLKCFARLLTPQSGT-VFLGDKPISMLSSRQLARRLALLPQHH 85
Query: 669 WIQTG-TIRENILFGKDMRQSFY------EEVLEGCALNQ-DIEMWADGDLSVVGERGIN 720
G T+RE + +G+ S + + A+ Q I AD L+ +
Sbjct: 86 LTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLT-------D 138
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--KTVLYTTH 778
LSGGQ+QR LA + ++ V + D+P + +D + L + LM L+ KTV+ H
Sbjct: 139 LSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMR--LMRELNTQGKTVVTVLH 196
Query: 779 QL-EFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
L + D ++V+ +G + G E+++ L+R
Sbjct: 197 DLNQASRYCDHLVVLANGHVMAQGTPEEVMTP---GLLRT 233
|
Length = 255 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 4e-05
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 6/100 (6%)
Query: 1208 IELENLLVQYNPTLPMV--LKGIT-CTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGG 1264
I + L ++ V + G++ PGE G++G G+GK+T ++ L ++EP G
Sbjct: 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEV-TGLLGPNGAGKTTTLRMLAGLLEPDAG 60
Query: 1265 RILIDGVDISMIGLQDLRSRLSIIPQDPMLFQG-TVRTNL 1303
+DG D+ + R RL + L+ T R NL
Sbjct: 61 FATVDGFDVVK-EPAEARRRLGFVSDSTGLYDRLTARENL 99
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 4e-05
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Query: 1223 MVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLR 1282
+ I+ T P G++G G+GKSTL++ + ++ P+ G I+ DG + +DL
Sbjct: 14 TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTR---KDLH 70
Query: 1283 SRLSIIPQDPMLFQGTVRTNLD---PLEQHSDQEIWEV 1317
S+I P+ T R NL L D I EV
Sbjct: 71 KIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEV 108
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 4e-05
Identities = 49/187 (26%), Positives = 88/187 (47%), Gaps = 28/187 (14%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSI-----LGEIPRISGAAIKVHGKKAYVPQSSWIQT 672
M+I K S A+ G G GKS+ + + L + RI G + + G+ Y P ++
Sbjct: 33 MQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGK-VSIEGEDIYEPDVDVVE- 90
Query: 673 GTIRENI--LFGKD--MRQSFYEEVLEGCALN----QDIEMWADGDL------SVVGER- 717
+R+N+ +F K S Y+ V G ++ +D++ + L +R
Sbjct: 91 --LRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRL 148
Query: 718 ---GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVL 774
++LSGGQ+QR+ +AR + + +FD+P SA+D T + +M L T++
Sbjct: 149 KSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDP-ISTARIEDLIMNLKKDYTIV 207
Query: 775 YTTHQLE 781
TH ++
Sbjct: 208 IVTHNMQ 214
|
Length = 258 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (110), Expect = 4e-05
Identities = 42/189 (22%), Positives = 80/189 (42%), Gaps = 31/189 (16%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSW---IQTGT 674
M+I + A+ G G GKS+ L L + + ++V G+ + Q+ + +
Sbjct: 28 MEIYQSKVTAIIGPSGCGKSTFLKC-LNRMNELESE-VRVEGRVEFFNQNIYERRVNLNR 85
Query: 675 IRENI--LFGKD--MRQSFYEEVLEGCALN----------------QDIEMWADGDLSVV 714
+R + + K S Y+ V G + +D ++W D +
Sbjct: 86 LRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLW-DEIKHKI 144
Query: 715 GERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGT---HLFKQCLMGLLSQK 771
+ ++LSGGQ+QR+ +ARA+ V + D+P +D L + + L S+
Sbjct: 145 HKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQS--LRLRSEL 202
Query: 772 TVLYTTHQL 780
T++ +H L
Sbjct: 203 TMVIVSHNL 211
|
Length = 261 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 5e-05
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 1224 VLKGITCTF-PGEKKIGVVGRTGSGKSTLIQAL--FRVVEPSGGRILIDGVDISMIGLQD 1280
+LKG+ T GE ++G GSGKSTL + + E + G IL G DI+ + ++
Sbjct: 15 ILKGVNLTIKKGEVHA-LMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEE 73
Query: 1281 LRSRLSII--PQDPMLFQG 1297
R+RL I Q P G
Sbjct: 74 -RARLGIFLAFQYPPEIPG 91
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 5e-05
Identities = 54/214 (25%), Positives = 87/214 (40%), Gaps = 31/214 (14%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILG-EIP-----RISG---AAIKVHGKKAY----- 663
+ I +G V + G G GKS+L +LG E P G + ++A+
Sbjct: 32 LSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQ 91
Query: 664 -VPQ---SSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDL--SVVGER 717
V Q S+ T+R+ I G+ +R + E + E+ L +
Sbjct: 92 LVFQDSPSAVNPRMTVRQII--GEPLRH--LTSLDESEQKARIAELLDMVGLRSEDADKL 147
Query: 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK---TVL 774
LSGGQ QRI +ARA+ + + D+ S +D + + L+ L Q L
Sbjct: 148 PRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILE--LLRKLQQAFGTAYL 205
Query: 775 YTTHQLEFLDA-ADLVLVMKDGKI-EQSGKYEDL 806
+ TH L + + V VM G+I E+ + L
Sbjct: 206 FITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLL 239
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (110), Expect = 5e-05
Identities = 39/142 (27%), Positives = 71/142 (50%), Gaps = 19/142 (13%)
Query: 662 AYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721
AY P+++ I I E I+ E+ L+ AL +++ DL G L
Sbjct: 184 AYGPRNNGINDRKILEKIV----------EKSLKSAALWDEVK----DDLDKAGNA---L 226
Query: 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQL- 780
SGGQ+QR+ +ARA+ +V + D+P SA+D T ++ ++ L + +++ TH +
Sbjct: 227 SGGQQQRLCIARAIALEPEVLLMDEPTSALDP-IATAKIEELILELKKKYSIIIVTHSMA 285
Query: 781 EFLDAADLVLVMKDGKIEQSGK 802
+ +D + G IE++G+
Sbjct: 286 QAQRISDETVFFYQGWIEEAGE 307
|
Length = 329 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 5e-05
Identities = 56/216 (25%), Positives = 91/216 (42%), Gaps = 29/216 (13%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILG-EIPRISGAAIKVHGKK-AYVP---------- 665
+ I KG A+ G+ G GKS+LL + G E P + I + G ++VP
Sbjct: 40 LTIYKGEIFALLGASGCGKSTLLRMLAGFEQP--TAGQIMLDGVDLSHVPPYQRPINMMF 97
Query: 666 QS-SWIQTGTIRENILFG----KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720
QS + T+ +NI FG K + V E L + M +
Sbjct: 98 QSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGL---VHM-----QEFAKRKPHQ 149
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL--LSQKTVLYTTH 778
LSGGQ+QR+ LAR++ + + D+P A+D + + + L + V+ T
Sbjct: 150 LSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHD 209
Query: 779 QLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSEL 814
Q E + A + +M GK Q G+ E++ +
Sbjct: 210 QEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRY 245
|
Length = 377 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 6e-05
Identities = 26/100 (26%), Positives = 52/100 (52%), Gaps = 8/100 (8%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTF-PGEKKI-GVVGRTGSGKSTLIQALFRVVEPSGGR 1265
+E+ + ++ + ++ + GE I ++G G+GKSTL++ LF + +P G
Sbjct: 5 LEMRGITKRFPGVV--ANDDVSLSVKKGE--IHALLGENGAGKSTLMKILFGLYQPDSGE 60
Query: 1266 ILIDGVDISMIGLQD-LRSRLSIIPQDPMLFQG-TVRTNL 1303
I +DG ++ + +D +R + ++ Q ML TV N+
Sbjct: 61 IRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENI 100
|
Length = 501 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 6e-05
Identities = 55/219 (25%), Positives = 102/219 (46%), Gaps = 28/219 (12%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRE 677
+ I KG A+ G G+GKS+L ++ G + SG I GK + ++ +RE
Sbjct: 27 INIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGR-ILFDGKPIDYSRKGLMK---LRE 82
Query: 678 NI--LFGKDMRQSF----YEEVLEGCALN-----QDIEMWADGDLSVVGERGIN------ 720
++ +F Q F Y++V G A+N ++ D L G +
Sbjct: 83 SVGMVFQDPDNQLFSASVYQDVSFG-AVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHC 141
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--TVLYTTH 778
LS GQK+R+ +A + V + D+P + +D G + L+ + + T++ TH
Sbjct: 142 LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDP-MGVSEIMKLLVEMQKELGLTIIIATH 200
Query: 779 QLEFLDA-ADLVLVMKDGKIEQSGKYEDLIADQNSELVR 816
++ + D V VMK+G++ G +++ A++ E++R
Sbjct: 201 DIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEK--EMLR 237
|
Length = 283 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 6e-05
Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--TVLYTTH 778
LSGGQ+QR+ +ARA+ V +FD+P +A+D + ++ L++ T + TH
Sbjct: 142 LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVS--IIRELAETGITQVIVTH 199
Query: 779 QLEFL-DAADLVLVMKDGKIEQSG 801
++E A V+ M++G I + G
Sbjct: 200 EVEVARKTASRVVYMENGHIVEQG 223
|
Length = 242 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 7e-05
Identities = 58/232 (25%), Positives = 95/232 (40%), Gaps = 70/232 (30%)
Query: 557 AQTKVSLYRIQEFIKEDNQKKPITE-----PTSKASDVAIDIEAGEYAWDAR----EENF 607
A++K L R +E + ++ QK+ T P + D I+ E + + + +F
Sbjct: 284 AKSKARLARYEELLSQEFQKRNETAEIYIPPGPRLGDKVIEAENLSKGFGDKLLIDDLSF 343
Query: 608 KKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---KKAYV 664
K P G V V G G+GKS+L I G+ SG IK+ G K AYV
Sbjct: 344 KLP-----------PGGIVGVIGPNGAGKSTLFRMITGQEQPDSGT-IKI-GETVKLAYV 390
Query: 665 PQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN---- 720
QS R+ + D ++ +EE+ G D+ +G+R +
Sbjct: 391 DQS--------RDAL----DPNKTVWEEISGG------------LDIIQLGKREVPSRAY 426
Query: 721 -----------------LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHT 755
LSGG++ R+ LA+ + S +V + D+P + +D T
Sbjct: 427 VGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVET 478
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 7e-05
Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 6/90 (6%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKT---VLYTT 777
LSGG +QR+ +A A+ V I D+P +A+D + + L+ +L ++ V++ T
Sbjct: 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQ--LIKVLQKEMSMGVIFIT 226
Query: 778 HQLEFL-DAADLVLVMKDGKIEQSGKYEDL 806
H + + + AD VLVM G+ ++G E +
Sbjct: 227 HDMGVVAEIADRVLVMYQGEAVETGSVEQI 256
|
Length = 623 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 7e-05
Identities = 63/290 (21%), Positives = 127/290 (43%), Gaps = 33/290 (11%)
Query: 529 SGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASD 588
S VL+ L ++ P+ L + ++AQ +++ R+ +F + N+ +P E S A +
Sbjct: 271 SAFVLALL----YIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELE-LSDADN 325
Query: 589 VAIDIEAGEYAWDA---REENFKKPTIKLTD-------KMKIMKGSKVAVCGSVGSGKSS 638
V + A + + D+ ++ + + ++ ++I +G V + G G GKS+
Sbjct: 326 VLL--LAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKST 383
Query: 639 LLSSILG-EIPR-----ISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFY-- 690
L G IP+ + GAA+ + Y S I + L G D +
Sbjct: 384 LAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHASLD 443
Query: 691 --EEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPF 748
++ L+ + +++ DG S LS GQ++R+ L A + + +FD+
Sbjct: 444 NAQQYLQRLEIADKVKI-EDGGFSTT----TALSTGQQKRLALICAWLEDRPILLFDEWA 498
Query: 749 SAVDAHTGTHLFKQCLMGLLSQ-KTVLYTTHQLEFLDAADLVLVMKDGKI 797
+ D +++ L L Q KT++ +H ++ + AD ++ + G I
Sbjct: 499 ADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCI 548
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 7e-05
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 10/71 (14%)
Query: 1232 FPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDL---------R 1282
+PGE +G+VG +GSGK+TL+ AL + P G + D + L L R
Sbjct: 30 YPGEV-LGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLR 88
Query: 1283 SRLSIIPQDPM 1293
+ + Q P
Sbjct: 89 TEWGFVHQHPR 99
|
Length = 258 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 8e-05
Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 21/103 (20%)
Query: 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1266
+E+E+L +Y VLKG++ I ++G +GSGKST ++ + + +PS G I
Sbjct: 6 ALEVEDLHKRYGEH--EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSI 63
Query: 1267 LIDGVDISMIG-------------LQDLRSRLSIIPQDPMLFQ 1296
++G +I + LQ LR+RL M+FQ
Sbjct: 64 RVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLG------MVFQ 100
|
Length = 256 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 8e-05
Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 9/104 (8%)
Query: 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE-----P 1261
+IE+ENL ++ +LK + P ++G +G GKST I+ L R+ +
Sbjct: 3 RIEVENLNTYFDDA--HILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFR 60
Query: 1262 SGGRILIDGVDI--SMIGLQDLRSRLSIIPQDPMLFQGTVRTNL 1303
G I +DGVDI + + +LR ++ ++ Q P F ++ N+
Sbjct: 61 HEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNV 104
|
Length = 250 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 8e-05
Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 1224 VLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDL- 1281
V+K I+ T PGE +G+VG +GSGKST AL R++ S G I DG + + + L
Sbjct: 301 VVKNISFTLRPGET-LGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLNRRQLL 358
Query: 1282 --RSRLSIIPQDP 1292
R R+ ++ QDP
Sbjct: 359 PVRHRIQVVFQDP 371
|
Length = 529 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 8e-05
Identities = 46/194 (23%), Positives = 83/194 (42%), Gaps = 42/194 (21%)
Query: 612 IKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQ 671
+ L K G VAV G G+GK++LL ILG A K G++ Y P S ++
Sbjct: 402 LNLEIKP----GDVVAVVGQSGAGKTTLLRMILG--------AQKGRGEEKYRPDSGKVE 449
Query: 672 TGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWAD--GD----LSVVGERGIN----- 720
+ L + F E + +E GD + ++ G++
Sbjct: 450 VPKNTVSALIPGEYEPEFGEVTI--------LEHLRSKTGDLNAAVEILNRAGLSDAVLY 501
Query: 721 ------LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--- 771
LS GQK+R +LA+ + +V + D+ + +D T + ++ + L+++
Sbjct: 502 RRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARK--ISELAREAGI 559
Query: 772 TVLYTTHQLEFLDA 785
T++ TH+ E +A
Sbjct: 560 TLIVVTHRPEVGNA 573
|
Length = 593 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 9e-05
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDIS 1274
VL I+ + G +G G+GK+T ++ + +++P G I DG
Sbjct: 15 VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQ 65
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 9e-05
Identities = 34/104 (32%), Positives = 55/104 (52%), Gaps = 6/104 (5%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK---TVLYTT 777
L+ GQKQR+ LARA+ V I D+ +++D + L LM L +K + +Y T
Sbjct: 150 LAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLIN--LMLELQEKQGISYIYVT 207
Query: 778 HQLEFLD-AADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKA 820
L + +D VLVM G++ + G D++A EL +++ A
Sbjct: 208 QHLGMMKHISDQVLVMHQGEVVERGSTADVLASPLHELTKRLIA 251
|
Length = 267 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 9e-05
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 13/109 (11%)
Query: 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHT----GTHLFKQCLMGLLSQKTVLYTT 777
SGG + RI LARA++ D+ + D+P + +D H T+L K KT + +
Sbjct: 346 SGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW-------PKTFIVVS 398
Query: 778 HQLEFLDA--ADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKS 824
H EFL+ D++ + + G Y+ + +L Q KA +
Sbjct: 399 HAREFLNTVVTDILHLHGQKLVTYKGDYDTFERTREEQLKNQQKAFESN 447
|
Length = 718 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 9e-05
Identities = 49/188 (26%), Positives = 76/188 (40%), Gaps = 49/188 (26%)
Query: 626 VAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK------AYVPQSSWI--QTG---- 673
V + G G+GK+SLL + G +G + G+ Y ++ Q G
Sbjct: 30 VQIEGPNGAGKTSLLRILAGLARPDAGE-VLWQGEPIRRQRDEYHQDLLYLGHQPGIKTE 88
Query: 674 -TIRENILFGKDMRQSFYEEVLEGCALNQDI---EMWADGDLSVVGERGI------NLSG 723
T EN+ FY L+ +W L+ VG G LS
Sbjct: 89 LTALENL--------RFY------QRLHGPGDDEALWEA--LAQVGLAGFEDVPVRQLSA 132
Query: 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKT-----VLYTTH 778
GQ++R+ LAR + + ++I D+PF+A+D G L LL+Q V+ TTH
Sbjct: 133 GQQRRVALARLWLTRAPLWILDEPFTAIDKQ-GV----ARLEALLAQHAEQGGMVILTTH 187
Query: 779 QLEFLDAA 786
Q + +
Sbjct: 188 QDLPVASD 195
|
Length = 204 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 34/140 (24%), Positives = 60/140 (42%), Gaps = 34/140 (24%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
+ELEN+ ++ L + + + ++G +G GK+T ++ + + EP+ GRI
Sbjct: 1 VELENVTKRFGNVT--ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIY 58
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQD---PMLFQG-------TVRTNLD-PLEQHS------ 1310
I G D++ + P+D M+FQ TV N+ L+
Sbjct: 59 IGGRDVTDLP-----------PKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEI 107
Query: 1311 DQEIWEV----KISKLLTHK 1326
D+ + EV +I LL K
Sbjct: 108 DERVREVAELLQIEHLLDRK 127
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 1e-04
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Query: 1231 TFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDI----SMIGLQDLRSRLS 1286
T PG+ + GR+GSGK+TLI+ + + P G I+++G + I L + R+
Sbjct: 19 TLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78
Query: 1287 IIPQDPMLF-QGTVRTNL 1303
+ Q+ LF +VR NL
Sbjct: 79 YVFQEARLFPHLSVRGNL 96
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 1e-04
Identities = 24/80 (30%), Positives = 45/80 (56%), Gaps = 13/80 (16%)
Query: 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMI------- 1276
VLKG++ I ++G +GSGKST ++ + + +PS G I+++G I+++
Sbjct: 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79
Query: 1277 ------GLQDLRSRLSIIPQ 1290
L+ LR+RL+++ Q
Sbjct: 80 KVADKNQLRLLRTRLTMVFQ 99
|
Length = 257 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 1e-04
Identities = 26/87 (29%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 1207 KIELENLLVQYNPTLPMVLKGITCT-FPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGR 1265
I +E++ +Y LK ++ + + GE + +VG GSGKSTL + L ++ P G
Sbjct: 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEW-VAIVGHNGSGKSTLAKLLNGLLLPEAGT 63
Query: 1266 ILIDGVDISMIGLQDLRSRLSIIPQDP 1292
I + G+ +S + D+R ++ ++ Q+P
Sbjct: 64 ITVGGMVLSEETVWDVRRQVGMVFQNP 90
|
Length = 279 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 1e-04
Identities = 33/113 (29%), Positives = 57/113 (50%), Gaps = 15/113 (13%)
Query: 1201 EWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRV-- 1258
E+ K+ +E+L V Y LKG++ P + ++G +G GKST ++ L R+
Sbjct: 39 EFDGDAKLSVEDLDVYYGDD--HALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMND 96
Query: 1259 ------VEPSGGRILIDGVDISMIG--LQDLRSRLSIIPQDPMLFQGTVRTNL 1303
++ G + +DG DI G L +LR R+ ++ Q P F ++R N+
Sbjct: 97 RIKAARID---GSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPKSIRENI 146
|
Length = 305 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 1e-04
Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK---TVLYTT 777
LSGG +Q+ LA+ + +N V I D+P VD ++K L+ L+Q+ ++ ++
Sbjct: 404 LSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYK--LINQLAQEGVAIIVVSS 461
Query: 778 HQLEFLDAADLVLVMKDGKIEQS 800
E L +D VLV+ +GK++
Sbjct: 462 ELAEVLGLSDRVLVIGEGKLKGD 484
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-04
Identities = 58/225 (25%), Positives = 99/225 (44%), Gaps = 31/225 (13%)
Query: 598 YAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSL---LSSILGEIPRISGAA 654
Y +++ EE+ +K + + +++ KG + + G GSGKS++ ++++L IP S
Sbjct: 12 YKYESNEESTEKLALDDVN-LEVKKGEFLVILGRNGSGKSTIAKHMNALL--IP--SEGK 66
Query: 655 IKVHGKKAYVPQSSWIQTGTIREN--ILFGKDMRQSFYEEVLEGCALN--------QDIE 704
+ V G ++ W IR ++F Q V E A ++I
Sbjct: 67 VYVDGLDTSDEENLW----DIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIR 122
Query: 705 MWADGDLSVVGERGIN------LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTH 758
D L VG LSGGQKQR+ +A + + IFD+P + +D +G
Sbjct: 123 ERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDP-SGRR 181
Query: 759 LFKQCLMGLLSQK--TVLYTTHQLEFLDAADLVLVMKDGKIEQSG 801
+ L + T++ TH +E AD ++VM GK+ G
Sbjct: 182 EVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEG 226
|
Length = 280 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 1e-04
Identities = 50/190 (26%), Positives = 84/190 (44%), Gaps = 32/190 (16%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSI-----LGEIPRISGAAIKVHGKKAYVPQSSWIQT 672
M + S A+ G G GKS++L SI L R++G I + Y +
Sbjct: 25 MDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGK-ILLDDTDIY---DRGVDP 80
Query: 673 GTIRENI--LFGKDM---RQSFYEEVLEGCALNQDIEMWADGDLSV------------VG 715
+IR + +F K S Y+ V+ G LN + ++ D V V
Sbjct: 81 VSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNR-SEADEIVESSLKRVALWDEVK 139
Query: 716 ER----GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK 771
+R + LSGGQ+QR+ +AR + +V + D+P SA+D T ++ + L +
Sbjct: 140 DRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDP-ISTLKIEELIEELKEKY 198
Query: 772 TVLYTTHQLE 781
T++ TH ++
Sbjct: 199 TIIIVTHNMQ 208
|
Length = 252 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 1e-04
Identities = 54/210 (25%), Positives = 87/210 (41%), Gaps = 42/210 (20%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILG-EIP-------------RISGAAIKVHGKK-- 661
+ + G VA+ G G GKS+L ++G E P +++ A K +
Sbjct: 33 LSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQ 92
Query: 662 --------AYVPQSS--WIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDL 711
A P+ + I +R + K R + E+L L D
Sbjct: 93 MVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDL----------DD 142
Query: 712 SVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK 771
SV+ +R LSGGQ QR+ LARA+ + I D+ S +D + + L+ L Q+
Sbjct: 143 SVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIR--LLKKLQQQ 200
Query: 772 T---VLYTTHQLEFLDA-ADLVLVMKDGKI 797
L+ TH L ++ V+VM +G+I
Sbjct: 201 FGTACLFITHDLRLVERFCQRVMVMDNGQI 230
|
Length = 268 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 1e-04
Identities = 48/232 (20%), Positives = 86/232 (37%), Gaps = 46/232 (19%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILG-EIPRISGAAIKVHGKKAYVPQSSWIQTGTIR 676
+ + +G A+ G GSGKS+L +I+G ++ I G+ I +
Sbjct: 25 LTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGED--------ILELSPD 76
Query: 677 ENILFG----------------KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVG----- 715
E G D ++ + + ++G
Sbjct: 77 ERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEF 136
Query: 716 -ERGIN--LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKT 772
ER +N SGG+K+R ++ + + + I D+P S +D + + + L +
Sbjct: 137 LERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDI-DALKIVAEGINALREEGR 195
Query: 773 -VLYTTHQLEFLDA--ADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAH 821
VL TH LD D V V+ DG+I +SG + EL +++
Sbjct: 196 GVLIITHYQRLLDYIKPDKVHVLYDGRIVKSG---------DPELAEELEEK 238
|
Length = 251 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 1e-04
Identities = 49/215 (22%), Positives = 87/215 (40%), Gaps = 32/215 (14%)
Query: 623 GSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV-------------HGKKAYVPQSSW 669
G + + G GSGKS+LL + G + G A + ++ + ++ W
Sbjct: 29 GEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEW 88
Query: 670 IQTGTIRENILFGKDMRQSFYEEVLEGCA---------LNQDIEMW---ADGDLSVVGER 717
G + +N G MR S + E + + W + D + + +
Sbjct: 89 ---GFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLEEVEIDPTRIDDL 145
Query: 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--TVLY 775
SGG +QR+Q+AR + + + D+P +D L L GL+ V+
Sbjct: 146 PRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLL-DLLRGLVRDLGLAVII 204
Query: 776 TTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLIAD 809
TH L A +LVM+ G++ +SG + ++ D
Sbjct: 205 VTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLDD 239
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-04
Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 24/122 (19%)
Query: 672 TGTIRENILFG--------KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGER----GI 719
T +IR+N++ G K E+ L G L W + V +R G
Sbjct: 99 TMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANL------WNE-----VKDRLDKPGG 147
Query: 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQ 779
LSGGQ+QR+ +ARA+ DV + D+P SA+D T + + L T++ TH
Sbjct: 148 GLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDP-ISTLAIEDLINELKQDYTIVIVTHN 206
Query: 780 LE 781
++
Sbjct: 207 MQ 208
|
Length = 258 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 1e-04
Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 9/132 (6%)
Query: 1196 SRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQAL 1255
+ P+W +EL N+ Y + I T + + ++G GSGKSTL L
Sbjct: 314 PQAFPDWQ---TLELRNVTFAY-QDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLL 369
Query: 1256 FRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIW 1315
+ +P G IL+DG ++ +D R S + D LF L P + ++ +
Sbjct: 370 TGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQL----LGPEGKPANPALV 425
Query: 1316 EVKISKL-LTHK 1326
E + +L + HK
Sbjct: 426 EKWLERLKMAHK 437
|
Length = 547 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-04
Identities = 57/240 (23%), Positives = 100/240 (41%), Gaps = 52/240 (21%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGA----AIKVHGKKAYVPQSSWIQTGTI 675
I G V + G GSGKS+L+ + G + SG + + KK ++ I
Sbjct: 30 IEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKK--------VKLSDI 81
Query: 676 REN--ILFGKDMRQSFYEEVLEGCAL--------NQDIEMWADGDLSVVG--------ER 717
R+ ++F Q F E + + A ++IE +++VG +
Sbjct: 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKS 141
Query: 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK---TVL 774
LSGGQK+R+ +A V + I D+P + +D + + + L ++ T++
Sbjct: 142 PFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNK--IKELHKEYNMTII 199
Query: 775 YTTHQLEFLDAA---DLVLVMKDGKIEQSGKYED------------LIADQNSELVRQMK 819
+H +E D A D ++VM GK E G + L Q + LVR+++
Sbjct: 200 LVSHSME--DVAKLADRIIVMNKGKCELQGTPREVFKEVETLESIGLAVPQVTYLVRKLR 257
|
Length = 287 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 2e-04
Identities = 20/40 (50%), Positives = 29/40 (72%)
Query: 1264 GRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNL 1303
G+IL+DGVDI L+DLR+ SI+ Q+PMLF ++ N+
Sbjct: 1277 GKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENI 1316
|
Length = 1466 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 2e-04
Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 22/93 (23%)
Query: 1223 MVLKGITCT-FPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDL 1281
VLKGI T GE ++G G+GKSTL++ + +V P G + I G
Sbjct: 25 EVLKGIDFTLHAGEVH-ALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGN---------P 74
Query: 1282 RSRLS----------IIPQDPMLFQG-TVRTNL 1303
+RL+ ++PQ+P+LF +V+ N+
Sbjct: 75 CARLTPAKAHQLGIYLVPQEPLLFPNLSVKENI 107
|
Length = 510 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-04
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 9/98 (9%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKK--IGVVGRTGSGKSTLIQALFRVVEPSGGR 1265
+E +L Y P LKGI F EK + ++G G+GKSTL +++P+ G
Sbjct: 2 LETRDLKYSY-PDGTEALKGIN--FKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGE 58
Query: 1266 ILIDG--VDISMIGLQDLRSRLSIIPQDP--MLFQGTV 1299
+LI G + L ++R + I+ Q+P LF TV
Sbjct: 59 VLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTV 96
|
Length = 275 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 23/113 (20%), Positives = 47/113 (41%), Gaps = 7/113 (6%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1266
+ NL M+ +G++ T GE V G G GK+TL++ L ++ P G +
Sbjct: 1 LAARNLACSRGER--MLFEGLSFTLNAGEALQ-VTGPNGIGKTTLLRILAGLLRPDSGEV 57
Query: 1267 LIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLD---PLEQHSDQEIWE 1316
+G ++ + R+ L + + + + NL + + + I +
Sbjct: 58 RWNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIED 110
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 2e-04
Identities = 55/229 (24%), Positives = 97/229 (42%), Gaps = 42/229 (18%)
Query: 599 AWDAREENFKKPTIKLTDKM--KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK 656
AWD N P IK D + + +G + + G VG+G++ L+ + G P I
Sbjct: 267 AWDP--VN---PHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIF 321
Query: 657 VHGKK--------------AYVP----QSSWIQTGTIRENIL---FGKDMRQSFYEEVLE 695
+ GK A VP + + + +NI + S ++ E
Sbjct: 322 IDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAE 381
Query: 696 GCALNQDIEMW----ADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAV 751
+ + I+ A +L++ LSGG +Q+ LA+ + N + I D+P +
Sbjct: 382 LKTILESIQRLKVKTASPELAIA-----RLSGGNQQKAVLAKCLLLNPKILILDEPTRGI 436
Query: 752 DAHTGTHLFKQCLMGLLSQK--TVLYTTHQL-EFLDAADLVLVMKDGKI 797
D ++K L+ L Q+ ++ + +L E L +D VLVM +GK+
Sbjct: 437 DVGAKYEIYK--LINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKL 483
|
Length = 506 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 2e-04
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVD 752
SGGQ+QRI +ARA+ + DV + D+P SA+D
Sbjct: 156 SGGQRQRIAIARALMLDPDVVVADEPVSALD 186
|
Length = 327 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-04
Identities = 39/191 (20%), Positives = 79/191 (41%), Gaps = 34/191 (17%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQS-SWIQTGTIREN 678
I + + + G G GK++ + + G + G +Y PQ GT+R+
Sbjct: 22 ISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRD- 80
Query: 679 ILFGKDMR---QSFYE-EVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734
+L +++ E+ + + Q ++ LSGG+ QR+ +A
Sbjct: 81 LLSSITKDFYTHPYFKTEIAKPLQIEQILD-----------REVPELSGGELQRVAIAAC 129
Query: 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMG--------LLSQKTVLYTTHQLEFLD-A 785
+ ++D+Y+ D+P + +D +Q LM ++KT H + +D
Sbjct: 130 LSKDADIYLLDEPSAYLDV-------EQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYL 182
Query: 786 ADLVLVMKDGK 796
AD ++V +G+
Sbjct: 183 ADRLIVF-EGE 192
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 1238 IGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDIS 1274
IG++G G GK+T I+ L V++P G I I+ +S
Sbjct: 28 IGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVS 64
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-04
Identities = 50/207 (24%), Positives = 80/207 (38%), Gaps = 32/207 (15%)
Query: 623 GSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVP-------------QSSW 669
G + + G GSGK++LL I G + +G ++ W
Sbjct: 32 GEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEW 91
Query: 670 IQTGTIRENILFGKDMRQSFYEEVLEGC------------ALNQDIEMWADGDLSVVGER 717
G + +N G M+ S + E A QD + DL + +
Sbjct: 92 ---GFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDL 148
Query: 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLY 775
SGG +QR+Q+AR + + + D+P +D L L GL+ V+
Sbjct: 149 PRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLL-DLLRGLVRELGLAVVI 207
Query: 776 TTHQLEFLD-AADLVLVMKDGKIEQSG 801
TH L AD ++VMK G++ +SG
Sbjct: 208 VTHDLAVARLLADRLMVMKQGQVVESG 234
|
Length = 258 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 2e-04
Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 17/138 (12%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQS-SWIQTGTIRE 677
+I G + + G G GK++ + + G I G+ + K +Y PQ S GT+ +
Sbjct: 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDL--KVSYKPQYISPDYDGTVED 420
Query: 678 ---NILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734
+ + F E+++ L +E D LSGG+ QR+ +A A
Sbjct: 421 LLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVD-----------ELSGGELQRVAIAAA 469
Query: 735 VYSNSDVYIFDDPFSAVD 752
+ +D+Y+ D+P + +D
Sbjct: 470 LSREADLYLLDEPSAYLD 487
|
Length = 591 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 2e-04
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 6/98 (6%)
Query: 708 DGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCL-MG 766
DG V + I+LSGG+ QR+ +A A+ N+ Y+FD+P + +D + + +
Sbjct: 59 DGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLS 118
Query: 767 LLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKY 803
+KT L H L LD +D + V + + G Y
Sbjct: 119 EEGKKTALVVEHDLAVLDYLSDRIHVFEG----EPGVY 152
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 2e-04
Identities = 71/266 (26%), Positives = 118/266 (44%), Gaps = 60/266 (22%)
Query: 610 PTIKLTDK--MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKA--YVP 665
P +K + + G +A+ G G+GKS+++ + G R +G+ I GK+ P
Sbjct: 15 PGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGS-ILYLGKEVTFNGP 73
Query: 666 QSS-------------WIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGD-- 710
+SS I TI ENI G++ F G + +M+A+ D
Sbjct: 74 KSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRF------GRIDWK--KMYAEADKL 125
Query: 711 ---LSV-------VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTH-- 758
L++ VGE LS G++Q +++A+ + S V I D+P DA T T
Sbjct: 126 LARLNLRFSSDKLVGE----LSIGEQQMVEIAKVLSFESKVIIMDEP---TDALTDTETE 178
Query: 759 -LFKQCLMGLLSQKT-VLYTTHQL-EFLDAADLVLVMKDGK-IEQSGKYEDLIADQNSEL 814
LF+ + L SQ ++Y +H+L E + D V V +DG+ I + +AD +
Sbjct: 179 SLFR-VIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAERE-----VADLTEDS 232
Query: 815 VRQMKAHRKSLDQ---VNPPQEDKCL 837
+ +M RK DQ ++ + L
Sbjct: 233 LIEMMVGRKLEDQYPRLDKAPGEVRL 258
|
Length = 501 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 3e-04
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
+E+EN+ ++ L I+ + + G++G G+GK+T I+ + ++ P G +L
Sbjct: 1 LEVENVTKRFGRV--TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVL 58
Query: 1268 IDG 1270
DG
Sbjct: 59 FDG 61
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 3e-04
Identities = 25/94 (26%), Positives = 50/94 (53%), Gaps = 6/94 (6%)
Query: 1204 SSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG 1263
+ G I +++L V Y VL ++ + + ++G++G GK+TL++A+ V+ +G
Sbjct: 2 ACGGIRIDHLRVAYGAN--TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAG 59
Query: 1264 --GRILIDGVDISMIGLQDLRSRLSIIPQDPMLF 1295
GRI I D++ + L+++ Q+ LF
Sbjct: 60 LTGRIAIADRDLTH--APPHKRGLALLFQNYALF 91
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 3e-04
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 712 SVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--S 769
++VG LSGGQKQRI +ARA+ N + I D+ S++D + +L ++ + L
Sbjct: 571 TLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLD-NKSEYLVQKTINNLKGNE 629
Query: 770 QKTVLYTTHQLEFLDAADLVLVMKD 794
+ + H+L + A+ + V+ +
Sbjct: 630 NRITIIIAHRLSTIRYANTIFVLSN 654
|
Length = 1466 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 42.4 bits (99), Expect = 3e-04
Identities = 16/62 (25%), Positives = 29/62 (46%)
Query: 1236 KKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLF 1295
+ I +VG GSGK+TL +AL R + P GG ++ + + + D + + +
Sbjct: 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGS 62
Query: 1296 QG 1297
Sbjct: 63 GE 64
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 3e-04
Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 7/87 (8%)
Query: 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE-PSGGR----ILIDGVDISMIGL 1278
VLK I FP + ++G +G GKSTL++AL R+ + SG R +L+D +I L
Sbjct: 19 VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNL 78
Query: 1279 Q--DLRSRLSIIPQDPMLFQGTVRTNL 1303
+LR R+ ++ Q P F ++ N+
Sbjct: 79 DVVNLRKRVGMVFQQPNPFPKSIFDNV 105
|
Length = 251 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 3e-04
Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 12/140 (8%)
Query: 1205 SGKIELENLLVQYNPTLPMVLKGI---TCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP 1261
S I L+N+ Y P K + + TF K V+G TGSGKST+IQ ++
Sbjct: 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIIS 63
Query: 1262 SGGRILIDGVDI-----SMIGLQDLRSRLSIIPQDP--MLFQGTVRTNL--DPLEQHSDQ 1312
G+ ++ I + ++ LR + ++ Q P LFQ T+ ++ P+ ++
Sbjct: 64 ETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENK 123
Query: 1313 EIWEVKISKLLTHKSYQCEY 1332
+ K+ +LL +Y
Sbjct: 124 QEAYKKVPELLKLVQLPEDY 143
|
Length = 289 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 3e-04
Identities = 59/218 (27%), Positives = 90/218 (41%), Gaps = 55/218 (25%)
Query: 628 VCGSVG---SGKSSLLSSILGEIPRISGAAIKVHG-------------KKAYVPQSSWIQ 671
V G +G SGKS+LL +LG S I + K AY+PQ
Sbjct: 39 VTGLIGHNGSGKSTLLK-MLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAA 97
Query: 672 TG-TIRENILFGK--------DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN-L 721
G T+RE + G+ + E+V E +L L + R ++ L
Sbjct: 98 EGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLV---------GLKPLAHRLVDSL 148
Query: 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVD-AHTGTHLFKQCLMGLLSQKTVLYTTHQL 780
SGG++QR +A V +S + D+P SA+D AH Q VL H+L
Sbjct: 149 SGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAH---------------QVDVLALVHRL 193
Query: 781 EFLDAADLVLVMKDGKIEQSGKYED-LIADQNSELVRQ 817
++ V+ D I + +Y D L+A + E++ Q
Sbjct: 194 SQERGLTVIAVLHD--INMAARYCDYLVALRGGEMIAQ 229
|
Length = 265 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 3e-04
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 714 VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTV 773
+ E G LSGGQ+QR+ +ARA+ + +V + D+P SA+D T ++ + L T+
Sbjct: 157 LHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDP-IATAKVEELIDELRQNYTI 215
Query: 774 LYTTHQLE 781
+ TH ++
Sbjct: 216 VIVTHSMQ 223
|
Length = 267 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 3e-04
Identities = 49/207 (23%), Positives = 85/207 (41%), Gaps = 33/207 (15%)
Query: 623 GSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFG 682
G + + G G+GKS+LL+ + G +I+ G+ P +W T R
Sbjct: 25 GEILHLVGPNGAGKSTLLARMAGMTS--GSGSIQFAGQ----PLEAWSATELARHRAYLS 78
Query: 683 KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGE---------RGIN-LSGGQKQRIQLA 732
+ F V L+Q + L+ V R N LSGG+ QR++LA
Sbjct: 79 QQQTPPFAMPVWHYLTLHQPDKTRT-ELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLA 137
Query: 733 RAVYS-------NSDVYIFDDPFSAVDAHTGTHLFK----QCLMGLLSQKTVLYTTHQLE 781
V + + D+P +++D + L + C GL ++ ++H L
Sbjct: 138 AVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGL----AIVMSSHDLN 193
Query: 782 F-LDAADLVLVMKDGKIEQSGKYEDLI 807
L A ++K GK+ SG+ E+++
Sbjct: 194 HTLRHAHRAWLLKRGKLLASGRREEVL 220
|
Length = 248 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 3e-04
Identities = 51/200 (25%), Positives = 95/200 (47%), Gaps = 36/200 (18%)
Query: 623 GSKVAVCGSVGSGKSSLLSSILGEIPR--ISGAAIKVHGKK---------AYVPQSSW-I 670
G+ A+ G+ G+GK++LL+ + + I+G V+G+ YV Q +
Sbjct: 789 GTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHL 848
Query: 671 QTGTIRENILFGKDMRQS----------FYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720
T T+RE++ F +RQ + EEV++ + E +AD +VVG G
Sbjct: 849 PTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEM----ESYAD---AVVGVPGEG 901
Query: 721 LSGGQKQRIQLARAVYSNSDVYIF-DDPFSAVDAHTGTHLFKQCLMGLLSQ--KTVLYTT 777
L+ Q++R+ + + + + +F D+P S +D+ T + LM L+ + +L T
Sbjct: 902 LNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSIC--KLMRKLADHGQAILCTI 959
Query: 778 HQ--LEFLDAADLVLVMKDG 795
HQ + D +L+++ G
Sbjct: 960 HQPSAILFEEFDRLLLLQKG 979
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 3e-04
Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 18/117 (15%)
Query: 674 TIRENILFG---------KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724
+I +NI FG +M + E L AL +++ + + G +LSGG
Sbjct: 109 SIYDNIAFGVRLFEKLSRAEMDERV-EWALTKAALWNEVK-------DKLHQSGYSLSGG 160
Query: 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLE 781
Q+QR+ +AR + +V + D+P SA+D T ++ + L TV+ TH ++
Sbjct: 161 QQQRLCIARGIAIRPEVLLLDEPCSALDP-ISTGRIEELITELKQDYTVVIVTHNMQ 216
|
Length = 260 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 3e-04
Identities = 45/193 (23%), Positives = 85/193 (44%), Gaps = 40/193 (20%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSI-----LGEIPRISGAAIKVHGKKAYVPQSSWIQ- 671
+ + +G+ A+ G G GK++ L +I L R++G I + G+ Y P+ +
Sbjct: 25 LDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGR-ILLDGQDIYGPRVDPVAM 83
Query: 672 ---------------TGTIRENILFG--------KDMRQSFYEEVLEGCALNQDIEMWAD 708
T ++ +N++ G +D E L G AL +++
Sbjct: 84 RRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVK---- 139
Query: 709 GDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL 768
+ LSGGQ+QR+ +ARA+ ++ + D+P SA+D + + + LM L
Sbjct: 140 ---DRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARI--EDLMTDL 194
Query: 769 SQ-KTVLYTTHQL 780
+ T++ TH +
Sbjct: 195 KKVTTIIIVTHNM 207
|
Length = 252 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 3e-04
Identities = 50/202 (24%), Positives = 95/202 (47%), Gaps = 40/202 (19%)
Query: 623 GSKVAVCGSVGSGKSSLLSS---------ILGEIPRISGAAIKVHGKKAYVPQSSWIQTG 673
G A+ G G+GK++L+ I G+I RISG K ++ + S + +
Sbjct: 906 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDI-RISGFPKK---QETFARISGYCEQN 961
Query: 674 -------TIRENILF----------GKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGE 716
T+RE++++ K+ + F +EV+E L+ + ++VG
Sbjct: 962 DIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKD-------AIVGL 1014
Query: 717 RGIN-LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLY 775
G+ LS Q++R+ +A + +N + D+P S +DA + + + + +TV+
Sbjct: 1015 PGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1074
Query: 776 TTHQ--LEFLDAADLVLVMKDG 795
T HQ ++ +A D +L+MK G
Sbjct: 1075 TIHQPSIDIFEAFDELLLMKRG 1096
|
Length = 1470 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 4e-04
Identities = 19/51 (37%), Positives = 32/51 (62%)
Query: 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDIS 1274
VLKG++ + + + +VG +GSGKSTL+ L + P+ G +L +G +S
Sbjct: 20 VLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLS 70
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 4e-04
Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 21/116 (18%)
Query: 1203 PSSGKIELENLLVQYNPTLPM------VLKGITCTF-PGEKKIGVVGRTGSGKSTLIQAL 1255
P+ IE+ +L + T+ +LKG+ GE + +VG +GSGKSTL+ L
Sbjct: 2 PAENIIEVHHL----SKTVGQGEGELSILKGVELVVKRGET-VAIVGPSGSGKSTLLAVL 56
Query: 1256 FRVVEPSGGRILIDGVDISMI---GLQDLRSR-LSIIPQDPMLFQGTVRTNLDPLE 1307
+ +PS G + + G + + LR+R + + Q L NL LE
Sbjct: 57 AGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLI-----PNLTALE 107
|
Length = 228 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 4e-04
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 1209 ELENLLVQYNPTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQAL--FRVVEPSGGR 1265
E+++L V+ +LKG+ T GE ++G GSGKSTL + E + G
Sbjct: 5 EIKDLHVEVEGKKE-ILKGVNLTVKEGEVHA-IMGPNGSGKSTLAYTIMGHPKYEVTEGE 62
Query: 1266 ILIDGVDI 1273
IL DG DI
Sbjct: 63 ILFDGEDI 70
|
Length = 251 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 4e-04
Identities = 36/143 (25%), Positives = 61/143 (42%), Gaps = 22/143 (15%)
Query: 655 IKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLE----GCALNQDIEMWADGD 710
++ K YV + G + E L K + ++EV+E L++D+
Sbjct: 161 LRAVHKPQYVDLIPKVVKGKVGE--LLKKVDERGKFDEVVERLGLENVLDRDVS------ 212
Query: 711 LSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ 770
LSGG+ QR+ +A A+ ++DVY FD+P S +D + +
Sbjct: 213 ---------ELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDG 263
Query: 771 KTVLYTTHQLEFLDA-ADLVLVM 792
K V+ H L LD +D V ++
Sbjct: 264 KYVIVVEHDLAVLDYLSDFVHIL 286
|
Length = 591 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 4e-04
Identities = 52/203 (25%), Positives = 87/203 (42%), Gaps = 36/203 (17%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIP---RISGAAIKVHGKKAYVPQSSWIQTGTIR 676
I KG V + G G GKS+LLS ++G + +G + ++ ++ + ++ Q G
Sbjct: 25 IAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGE-LWLNEQRLDMLPAAQRQIG--- 80
Query: 677 ENILFGKDM---RQSFYEEVLEGCALNQDIE-----MWADGDLSVVGERGI------NLS 722
ILF + S + +L AL ++ A+ L G G LS
Sbjct: 81 --ILFQDALLFPHLSVGQNLL--FALPATLKGNARRNAANAALERSGLDGAFHQDPATLS 136
Query: 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKT-----VLYTT 777
GGQ+ R+ L RA+ + + D+PFS +D L Q + S+ + T
Sbjct: 137 GGQRARVALLRALLAQPKALLLDEPFSRLDV----ALRDQFRQWVFSEVRAAGIPTVQVT 192
Query: 778 HQLEFLDAADLVLVMKDGKIEQS 800
H L+ + A V+ M + EQ+
Sbjct: 193 HDLQDVPAGSRVIEM--AQWEQN 213
|
Length = 213 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 5e-04
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 13/80 (16%)
Query: 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRS 1283
+L+ ++ + P K V+G TGSGKSTL+Q+L E S GR+ + RS
Sbjct: 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE------------RS 722
Query: 1284 RLSIIPQDPMLFQGTVRTNL 1303
++ +PQ + TVR N+
Sbjct: 723 -IAYVPQQAWIMNATVRGNI 741
|
Length = 1560 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 5e-04
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 7/86 (8%)
Query: 1225 LKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRV-----VEPSGGRILIDGVDISM--IG 1277
+KGI F K ++G +GSGKST +++L R+ + G+IL G+DI+ I
Sbjct: 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95
Query: 1278 LQDLRSRLSIIPQDPMLFQGTVRTNL 1303
+ ++R + ++ Q P F ++ N+
Sbjct: 96 VYEMRKHIGMVFQRPNPFAKSIYENI 121
|
Length = 267 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 5e-04
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 17/94 (18%)
Query: 1228 ITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDI---SMIGLQDLRSR 1284
I+ T P K ++G +G GK+TL++ + + P G IL DG +I S L +R R
Sbjct: 26 ISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKR 85
Query: 1285 LSIIPQDPMLFQ-GTVRTNLD-------PLEQHS 1310
+S MLFQ G + T+++ PL +H+
Sbjct: 86 MS------MLFQSGALFTDMNVFDNVAYPLREHT 113
|
Length = 269 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 5e-04
Identities = 34/144 (23%), Positives = 64/144 (44%), Gaps = 19/144 (13%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRE 677
+ I +G V + G+ G+GK++LL ++ G+ PR + I GK + W +RE
Sbjct: 26 LHINQGEIVTLIGANGAGKTTLLGTLCGD-PRATSGRIVFDGKDI----TDWQTAKIMRE 80
Query: 678 NILFGKDMRQSF----YEEVLEGCALNQDIEMWADGDLSVVG----------ERGINLSG 723
+ + R+ F EE L + + + + V +R +SG
Sbjct: 81 AVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSG 140
Query: 724 GQKQRIQLARAVYSNSDVYIFDDP 747
G++Q + + RA+ S + + D+P
Sbjct: 141 GEQQMLAIGRALMSQPRLLLLDEP 164
|
Length = 237 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 5e-04
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 721 LSGGQKQRIQLARAV----YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYT 776
LSGG+K+ LA + +YI D+ +D G L + L L+ V+
Sbjct: 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVI 137
Query: 777 THQLEFLDAADLVLVMK 793
TH E + AD ++ +K
Sbjct: 138 THLPELAELADKLIHIK 154
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 6e-04
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG---GRILIDGVDISMIGLQD 1280
+L ++ + + ++G +GSGK+TL+ A+ VE G G+IL +G
Sbjct: 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP---DQ 78
Query: 1281 LRSRLSIIPQDPMLFQG-TVRTNL 1303
+ ++ + QD +L G TVR L
Sbjct: 79 FQKCVAYVRQDDILLPGLTVRETL 102
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 6e-04
Identities = 28/103 (27%), Positives = 53/103 (51%), Gaps = 9/103 (8%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE--PS--- 1262
I L+N+ + Y +K + C P K ++G +G GKST++++L R+ +
Sbjct: 14 ISLQNVTISYGTF--EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSL 71
Query: 1263 GGRILIDGVDI--SMIGLQDLRSRLSIIPQDPMLFQGTVRTNL 1303
GR+L DG D+ + ++R R+ ++ Q P F ++ N+
Sbjct: 72 KGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENI 114
|
Length = 269 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 6e-04
Identities = 63/249 (25%), Positives = 109/249 (43%), Gaps = 50/249 (20%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH-GKK---AYVPQSSWIQTGTI 675
+ +G K+A+ G G GK++LL +LG++ SG ++H G K AY Q
Sbjct: 342 VQRGDKIALIGPNGCGKTTLLKLMLGQLQADSG---RIHCGTKLEVAYFDQH-------- 390
Query: 676 RENILFGKDMRQSFYEEVLEGCALNQDIEMWADG-DLSVVG---------ERGIN----L 721
R + D ++ + + EG Q++ + +G V+G +R + L
Sbjct: 391 RAEL----DPEKTVMDNLAEG---KQEVMV--NGRPRHVLGYLQDFLFHPKRAMTPVKAL 441
Query: 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQ 779
SGG++ R+ LAR S++ I D+P + +D T + L LL Q TVL +H
Sbjct: 442 SGGERNRLLLARLFLKPSNLLILDEPTNDLDVET-----LELLEELLDSYQGTVLLVSHD 496
Query: 780 LEFLD--AADLVLVMKDGKIEQ-SGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKC 836
+F+D + + +GKI + G Y D A Q +K + + +
Sbjct: 497 RQFVDNTVTECWIFEGNGKIGRYVGGYHD--ARQQQAQYLALKQPAVKKKEEAAAPKAET 554
Query: 837 LSRVPCQMS 845
+ R ++S
Sbjct: 555 VKRSSKKLS 563
|
Length = 635 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 6e-04
Identities = 47/190 (24%), Positives = 84/190 (44%), Gaps = 33/190 (17%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSI------------LGEIP----RISGAAIKV---- 657
M I K + A+ G G GKS+ L SI GEI I + I V
Sbjct: 42 MDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLR 101
Query: 658 ------HGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDL 711
K P+S + I + + + R+S +E++E +L + +W D
Sbjct: 102 REIGMVFQKPNPFPKSIY---NNITHALKYAGERRKSVLDEIVEE-SLTK-AALW-DEVK 155
Query: 712 SVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK 771
+ ++LSGGQ+QR+ +AR + V + D+P SA+D + + ++ + L +
Sbjct: 156 DRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKI-EELITELKEEY 214
Query: 772 TVLYTTHQLE 781
+++ TH ++
Sbjct: 215 SIIIVTHNMQ 224
|
Length = 268 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 7e-04
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 1224 VLKGIT-CTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLR 1282
+ G++ GE + + G GSGK+TL++ + ++ P+ G I +DG D I D+
Sbjct: 17 LFSGLSFTLAAGEALV-LTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGD---IDDPDVA 72
Query: 1283 SRLSII-PQDPMLFQGTVRTNLD 1304
+ ++ M TV NL+
Sbjct: 73 EACHYLGHRNAMKPALTVAENLE 95
|
Length = 207 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 7e-04
Identities = 47/179 (26%), Positives = 79/179 (44%), Gaps = 24/179 (13%)
Query: 630 GSVGSGKS-------SLLSSILGEIPRISGAAIKVHGKKAYVPQSSW-IQT-----GTIR 676
G G GKS SL+S G + G I + Y Q S+ QT T+
Sbjct: 40 GPSGCGKSTLLKIVASLISPTSGTL-LFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVY 98
Query: 677 ENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN-LSGGQKQRIQLARAV 735
+N++F +R + D+E +A D + + I LSGG+KQRI L R +
Sbjct: 99 DNLIFPWQIRNQQPDPA----IFLDDLERFALPDTIL--TKNIAELSGGEKQRISLIRNL 152
Query: 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--TVLYTTHQLEFLDAADLVLVM 792
V + D+ SA+D ++ + + + ++ VL+ TH + ++ AD V+ +
Sbjct: 153 QFMPKVLLLDEITSALDESNKHNV-NEIIHRYVREQNIAVLWVTHDKDEINHADKVITL 210
|
Length = 225 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 7e-04
Identities = 23/91 (25%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Query: 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK-TVLYTTH 778
+LSGG+KQR+ LAR + +++ D+P +D T + + + +++ T+H
Sbjct: 168 DLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSH 227
Query: 779 QLEFL-DAADLVLVMKDGKIEQSGKYEDLIA 808
E + D +D + +++G+I++ G ++++A
Sbjct: 228 WPEVIEDLSDKAIWLENGEIKEEGTPDEVVA 258
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 8e-04
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 1225 LKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSR 1284
+ G+ + G +G G+GK+T I+ L ++ P+ G + G D+ + +R
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRK-VRRS 67
Query: 1285 LSIIPQDPMLFQG-TVRTNL 1303
+ I+PQ + + T R NL
Sbjct: 68 IGIVPQYASVDEDLTGRENL 87
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 8e-04
Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 9/105 (8%)
Query: 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE--PS- 1262
GKI +++L + Y LK I + ++G +G GKST ++ L R+ + PS
Sbjct: 2 GKISVKDLDLFYGDF--QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSV 59
Query: 1263 --GGRILIDGVDI--SMIGLQDLRSRLSIIPQDPMLFQGTVRTNL 1303
G +L+DG DI S I + LR R+ ++ Q P F ++ N+
Sbjct: 60 KIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNV 104
|
Length = 250 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 8e-04
Identities = 54/228 (23%), Positives = 97/228 (42%), Gaps = 36/228 (15%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSI--LGEI---PRISGAAIKVHGKKAY--------- 663
++I + A+ G GSGKS+LL L E+ R+SG + G+ +
Sbjct: 24 LEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVY-LDGQDIFKMDVIELRR 82
Query: 664 -------VPQSSWIQTGTIRENILFGKDM------RQSFYEEVLEGCALNQDIEMWADGD 710
+P I +I EN+ G + ++ E V AL + ++W +
Sbjct: 83 RVQMVFQIPNP--IPNLSIFENVALGLKLNRLVKSKKELQERVRW--AL-EKAQLWDEVK 137
Query: 711 LSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ 770
+ G LSGGQ+QR+ +ARA+ +V + D+P + +D T + + L
Sbjct: 138 DRLDAPAG-KLSGGQQQRLCIARALAFQPEVLLADEPTANLDPEN-TAKIESLFLELKKD 195
Query: 771 KTVLYTTH-QLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
T++ TH + +D V + G+I + G ++ + EL +
Sbjct: 196 MTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFTNPRHELTEK 243
|
Length = 250 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 8e-04
Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFR---VVE--P 1261
K +ENL + Y LK I P + ++G +G GKSTL++ L R ++E
Sbjct: 3 KFNIENLDLFYGEN--QALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVK 60
Query: 1262 SGGRILIDGVDI-SMIGLQDLRSRLSIIPQDPMLFQGTVRTNL 1303
G++ +DG DI I + DLR ++ ++ Q P F ++ N+
Sbjct: 61 ITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFPMSIYENV 103
|
Length = 249 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 8e-04
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Query: 1208 IELENL-----LVQYNPTLPMVLKGITCT-FPGEKKIGVVGRTGSGKSTLIQALFRVVEP 1261
+E+E+L L Q VLK ++ T GE + + G +G+GKSTL+++L+ P
Sbjct: 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGEC-VALSGPSGAGKSTLLKSLYANYLP 60
Query: 1262 SGGRILI 1268
GRIL+
Sbjct: 61 DSGRILV 67
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 16/102 (15%)
Query: 1212 NLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGV 1271
L V LP I E G+ G +G+GKSTL++ + + +P GG I+++G
Sbjct: 1 MLCVDIEKRLPDFTLKIDFDLNEEV-TGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGT 59
Query: 1272 DISMIGLQDLRSRLSIIPQD---PMLFQG-------TVRTNL 1303
L D R ++++ PQ ++FQ VR NL
Sbjct: 60 V-----LFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENL 96
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.001
Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 4/67 (5%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1266
IE++NL+ +++ VL GI PGE + ++G +GSGK+TL++ + + +P G I
Sbjct: 4 IEVKNLVKKFHGQ--TVLHGIDLEVKPGEV-VAIIGPSGSGKTTLLRCINLLEQPEAGTI 60
Query: 1267 LIDGVDI 1273
+ + I
Sbjct: 61 RVGDITI 67
|
Length = 250 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 26/116 (22%), Positives = 46/116 (39%), Gaps = 8/116 (6%)
Query: 1207 KIELENLLVQYNPTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGR 1265
+E ENL + + ++ T GE + G G+GK+TL++ L ++ P G
Sbjct: 2 MLEAENLSCERGER--TLFSDLSFTLNAGEALQ-ITGPNGAGKTTLLRILAGLLRPDAGE 58
Query: 1266 ILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNL----DPLEQHSDQEIWEV 1317
+ G I + ++ L + Q + + T NL + IWE
Sbjct: 59 VYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEA 114
|
Length = 209 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.001
Identities = 23/86 (26%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 1208 IELENLLVQYNP-TLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1266
IE++NL +Y L ++ + + ++G GSGKST ++ + ++E G+I
Sbjct: 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64
Query: 1267 LIDGVDISMIGLQDLRSRLSIIPQDP 1292
+IDG ++ + D+R ++ ++ Q+P
Sbjct: 65 IIDGDLLTEENVWDIRHKIGMVFQNP 90
|
Length = 279 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.001
Identities = 30/89 (33%), Positives = 50/89 (56%), Gaps = 15/89 (16%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHL------FKQCL-MGLLSQKTV 773
LSGG++QR+ +A A+ + ++ I D+P +A+D + +Q L MGL
Sbjct: 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGL------ 210
Query: 774 LYTTHQLEFL-DAADLVLVMKDGK-IEQS 800
L+ TH L + AD V VM++G+ +EQ+
Sbjct: 211 LFITHNLSIVRKLADRVAVMQNGRCVEQN 239
|
Length = 529 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 0.001
Identities = 53/220 (24%), Positives = 92/220 (41%), Gaps = 43/220 (19%)
Query: 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--KAYVPQSS------WIQTG 673
KG + V G +G+G++ L+ + G +PR SG + + G PQ +I
Sbjct: 277 KGEILGVSGLMGAGRTELMKVLYGALPRTSGY-VTLDGHEVVTRSPQDGLANGIVYISED 335
Query: 674 TIRENILFGKDMRQSFYEEVLE-----GCALNQDIEMWADGDL------------SVVGE 716
R+ ++ G ++++ L G +L E A D +G
Sbjct: 336 RKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIG- 394
Query: 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHL------FKQCLMGLLSQ 770
LSGG +Q++ +AR + + V I D+P VD + FK + +
Sbjct: 395 ---LLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSI--- 448
Query: 771 KTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQ 810
+L ++ E L +D +LVM +G+I SG++ A Q
Sbjct: 449 --ILVSSEMPEVLGMSDRILVMHEGRI--SGEFTREQATQ 484
|
Length = 501 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.001
Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 9/113 (7%)
Query: 1198 PSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFR 1257
S + KI++ NL Y LK I + +G +G GKSTL++ R
Sbjct: 4 MSMVATAPSKIQVRNLNFYYGKF--HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNR 61
Query: 1258 VVE--P---SGGRILIDGVDI--SMIGLQDLRSRLSIIPQDPMLFQGTVRTNL 1303
+ E P + G IL+DG +I + LR+++ ++ Q P F ++ N+
Sbjct: 62 MYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNI 114
|
Length = 260 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.001
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 6/90 (6%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK---TVLYTT 777
LSGG QR+ +A A+ + I D+P +A+D + + L+ L QK ++ T
Sbjct: 154 LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIE--LLLELQQKENMALVLIT 211
Query: 778 HQLEFL-DAADLVLVMKDGKIEQSGKYEDL 806
H L + +AA ++VM G++ ++GK D+
Sbjct: 212 HDLALVAEAAHKIIVMYAGQVVETGKAHDI 241
|
Length = 326 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.001
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Query: 649 RISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWAD 708
++ +KV K YV G + E +L KD R +E+++ L
Sbjct: 81 KLLEGDVKVIVKPQYVDLIPKAVKGKVGE-LLKKKDERGKL-DELVDQLELRH------- 131
Query: 709 GDLSVVGERGI-NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVD 752
V +R I LSGG+ QR+ +A A+ ++D Y FD+P S +D
Sbjct: 132 -----VLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLD 171
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.001
Identities = 42/140 (30%), Positives = 62/140 (44%), Gaps = 22/140 (15%)
Query: 630 GSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWI-----QTGTIREN--ILFG 682
G G+GKS+LL I G I R S I G ++ + Q G I ++ +L
Sbjct: 35 GHSGAGKSTLLKLICG-IERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLL-- 91
Query: 683 KDMRQSFYEEV----LEGCALNQDIEMWADGDLSVVG------ERGINLSGGQKQRIQLA 732
M ++ Y+ V + A DI L VG I LSGG++QR+ +A
Sbjct: 92 --MDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIA 149
Query: 733 RAVYSNSDVYIFDDPFSAVD 752
RAV + V + D+P +D
Sbjct: 150 RAVVNKPAVLLADEPTGNLD 169
|
Length = 222 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.001
Identities = 55/204 (26%), Positives = 87/204 (42%), Gaps = 46/204 (22%)
Query: 626 VAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-----------------AYVPQS- 667
+A+ G GSGKS+LL+ IL + S + + G+ +V QS
Sbjct: 39 IALIGESGSGKSTLLA-ILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSF 97
Query: 668 SWIQTGTIRENI-----LFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGER----G 718
I T EN+ L G+ RQS N + L G+R
Sbjct: 98 MLIPTLNALENVELPALLRGESSRQS----------RNGAKALLEQLGL---GKRLDHLP 144
Query: 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK---TVLY 775
LSGG++QR+ LARA DV D+P +D TG + L+ L+++ T++
Sbjct: 145 AQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIAD--LLFSLNREHGTTLIL 202
Query: 776 TTHQLEFLDAADLVLVMKDGKIEQ 799
TH L+ D L + +G++++
Sbjct: 203 VTHDLQLAARCDRRLRLVNGQLQE 226
|
Length = 228 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 0.002
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 13/80 (16%)
Query: 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRS 1283
VLK I+ + + V G TGSGKS+L+ + +EPS G+I G
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG------------- 487
Query: 1284 RLSIIPQDPMLFQGTVRTNL 1303
R+S PQ + GT++ N+
Sbjct: 488 RISFSPQTSWIMPGTIKDNI 507
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 19/66 (28%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 1239 GVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIP-QDPMLFQG 1297
G++G G+GK+TL++ + ++ P G++ IDGVD +R ++ ++ + + +
Sbjct: 32 GLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSF-VRRKIGVLFGERGLYARL 90
Query: 1298 TVRTNL 1303
T R NL
Sbjct: 91 TARENL 96
|
Length = 245 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.002
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 20/94 (21%)
Query: 1224 VLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFR------VVEPSGGRILIDGVDISMI 1276
+KGI+ GE + +VG +GSGKS ++ PS G IL DG D+
Sbjct: 25 AVKGISFDIEAGET-LALVGESGSGKSVTALSILGLLPSPAAAHPS-GSILFDGEDLLAA 82
Query: 1277 GLQDLR----SRLSIIPQDPMLFQGTVRTNLDPL 1306
+ LR +++ +I Q+PM T+L+PL
Sbjct: 83 SERQLRGVRGNKIGMIFQEPM-------TSLNPL 109
|
Length = 534 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 0.002
Identities = 24/101 (23%), Positives = 51/101 (50%), Gaps = 13/101 (12%)
Query: 1209 ELENLLVQYNPTLPMVLKGITCT-FPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
E+ L ++ ++ ++ GE +G+ G G+G++ L +ALF + P+ G I
Sbjct: 6 EVRGL------SVKGAVRDVSFEVRAGEI-VGIAGLVGNGQTELAEALFGLRPPASGEIT 58
Query: 1268 IDGVDISMIGLQD-LRSRLSIIPQDPM---LFQG-TVRTNL 1303
+DG ++ +D +R+ ++ +P+D L +V N+
Sbjct: 59 LDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENI 99
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.002
Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRS 1283
V++ ++ T + +G++G G+GK+T + +V G I+ID DIS++ L R+
Sbjct: 18 VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHA-RA 76
Query: 1284 RLSI--IPQDPMLFQ 1296
R I +PQ+ +F+
Sbjct: 77 RRGIGYLPQEASIFR 91
|
Length = 241 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.002
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 9/103 (8%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE--PS--- 1262
+ +NL + Y L IT + P + ++G +G GKSTL++ R+ + P
Sbjct: 7 LSTKNLNLWYGEK--HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRI 64
Query: 1263 GGRILIDGVDISMIGLQ--DLRSRLSIIPQDPMLFQGTVRTNL 1303
G IL +G +I G LR ++ ++ Q P F ++ N+
Sbjct: 65 TGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPKSIYENV 107
|
Length = 253 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 0.002
Identities = 27/89 (30%), Positives = 51/89 (57%), Gaps = 7/89 (7%)
Query: 1208 IELENLLVQYNPTLPM-VLKGITCTFPGEKKIGVVGRTGSGKST---LIQALFRVVEPSG 1263
+E+ENL+ +Y + L G++ + + + ++G+ GSGKST LI LF E
Sbjct: 5 LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFE--- 61
Query: 1264 GRILIDGVDISMIGLQDLRSRLSIIPQDP 1292
G++ IDG ++ + +LR ++ ++ Q+P
Sbjct: 62 GKVKIDGELLTAENVWNLRRKIGMVFQNP 90
|
Length = 277 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 0.002
Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 15/110 (13%)
Query: 1204 SSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRV----- 1258
+ +I++ENL + Y LK ++ P ++G +G GKST I+ L R+
Sbjct: 9 AQPQIKVENLNLWYGEK--QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIK 66
Query: 1259 ---VEPSGGRILIDGVDISMIGLQ--DLRSRLSIIPQDPMLFQGTVRTNL 1303
+E G++ I+G DI + +LR + ++ Q P F ++ N+
Sbjct: 67 NCRIE---GKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNV 113
|
Length = 258 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.002
Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQ 779
LS G++ R+ LA+ + + I D+P +D T + L ++T + +H
Sbjct: 428 LSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHD 487
Query: 780 LEF-LDAADLVLVMKDGKIEQSGKYEDLIAD 809
++F LD D +M+DGKI + G E+++ +
Sbjct: 488 MDFVLDVCDRAALMRDGKIVKIGDPEEIVEE 518
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 55/227 (24%), Positives = 92/227 (40%), Gaps = 35/227 (15%)
Query: 622 KGSKVAVCGSVGSGKSSLLSSILGEIP----RISG---------AAIKVHGKKAYV---- 664
+G +A+ G GSGKS ++ LG +P + +G A + G+K
Sbjct: 28 RGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQN 87
Query: 665 PQSSWIQTGTI----RENIL-FGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719
P+S++ T+ RE L GK + LE L + V+
Sbjct: 88 PRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGL--------ENAARVLKLYPF 139
Query: 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKT--VLYTT 777
+SGG QR+ +A A+ + I D+P + +D + L ++ ++ +L T
Sbjct: 140 EMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARIL-DLLESIVQKRALGMLLVT 198
Query: 778 HQLEFL-DAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQM-KAHR 822
H + + AD V VM G+I + G E L + R + AH
Sbjct: 199 HDMGVVARLADDVAVMSHGRIVEQGDVETLFNAPKHAVTRSLVSAHL 245
|
Length = 254 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 0.002
Identities = 47/146 (32%), Positives = 64/146 (43%), Gaps = 29/146 (19%)
Query: 655 IKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVV 714
IKV K YV + G +RE +L D R +EV+E L L +
Sbjct: 160 IKVVHKPQYVDLIPKVFKGKVRE-LLKKVDERGKL-DEVVE--RLG----------LENI 205
Query: 715 GERGI-NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCL------MGL 767
+R I LSGG+ QR+ +A A+ ++D Y FD+P S +D +Q L L
Sbjct: 206 LDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLD-------IRQRLNVARLIREL 258
Query: 768 LSQKTVLYTTHQLEFLDA-ADLVLVM 792
K VL H L LD AD V +
Sbjct: 259 AEGKYVLVVEHDLAVLDYLADNVHIA 284
|
Length = 590 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.003
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Query: 1210 LENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILID 1269
+ +L + Y L+ ++ T + + V+G +G GK+TL+ + V PS G I ++
Sbjct: 6 VSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLN 65
Query: 1270 GVDISMIGLQDLRSRLSIIPQDPMLF 1295
G I G + ++ Q+ L
Sbjct: 66 GRRIEGPG-----AERGVVFQNEALL 86
|
Length = 259 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.003
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 8/61 (13%)
Query: 1238 IGVVGRTGSGKSTLIQALFRVVEP----SGGRILIDGVDISMIGLQDLRSR-LSIIPQDP 1292
+ +VG +GSGKS A+ ++ P + G IL+DG + + +R R ++ I Q+P
Sbjct: 15 LALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLS---IRGRHIATIMQNP 71
Query: 1293 M 1293
Sbjct: 72 R 72
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.003
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 13/60 (21%)
Query: 1225 LKGITCTFPGEKKI-------------GVVGRTGSGKSTLIQALFRVVEPSGGRILIDGV 1271
GI TFPG K + ++G G+GKSTL++ L +P G ILIDG
Sbjct: 7 FDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQ 66
|
Length = 501 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.003
Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 5/75 (6%)
Query: 1233 PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD---LRSRLSIIP 1289
PGE + G +G+GKSTL++ + + PS G+I G DI+ + ++ LR ++ +I
Sbjct: 27 PGEMAF-LTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIF 85
Query: 1290 QD-PMLFQGTVRTNL 1303
QD +L TV N+
Sbjct: 86 QDHHLLMDRTVYDNV 100
|
Length = 222 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 11/91 (12%)
Query: 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP----S 1262
+IEL N+ +Q P+V G++ T + + +VG +GSGKS A ++ +
Sbjct: 4 QIELRNIALQ--AAQPLV-HGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQT 60
Query: 1263 GGRILIDGVDISMIGLQDLRSRL-SIIPQDP 1292
GR+L+DG ++ LR R + I Q+P
Sbjct: 61 AGRVLLDGKPVA---PCALRGRKIATIMQNP 88
|
Length = 254 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.003
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 1204 SSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG 1263
S ++ E L + Y V + +T P ++G G GKSTL++ L R++ P+
Sbjct: 4 SVARLRGEQLTLGYGKY--TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAH 61
Query: 1264 GRILIDGVDISMIGLQDLRSRLSIIPQD 1291
G + +DG I +++ R+ ++ Q+
Sbjct: 62 GHVWLDGEHIQHYASKEVARRIGLLAQN 89
|
Length = 265 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 0.003
Identities = 17/29 (58%), Positives = 22/29 (75%), Gaps = 2/29 (6%)
Query: 1224 VLKGITCTF-PGEKKIGVVGRTGSGKSTL 1251
+LK I+ +F PG KIGV+G G+GKSTL
Sbjct: 22 ILKDISLSFFPG-AKIGVLGLNGAGKSTL 49
|
Length = 556 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.004
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKT-VLYTTHQ 779
LSGG +Q++ +A+ + ++ + I D+P VD ++ Q + + +Q VL+ +
Sbjct: 404 LSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIY-QLIRSIAAQNVAVLFISSD 462
Query: 780 L-EFLDAADLVLVMKDGKIEQS 800
L E AD VLVM G+I +
Sbjct: 463 LEEIEQMADRVLVMHQGEISGA 484
|
Length = 510 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.004
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
VL + P + + VVGR+G GKSTL++ L + PS G +L
Sbjct: 27 VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELL 70
|
Length = 257 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.004
Identities = 75/313 (23%), Positives = 132/313 (42%), Gaps = 65/313 (20%)
Query: 506 WASPTLVSVITFGVCIL-LKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLY 564
WA + + T+ + +L L+TPL LSA+ P L+S +V+
Sbjct: 259 WADTNVAA--TYSLTLLFLRTPL-----LSAVGAL----------PTLLS----AQVAFN 297
Query: 565 RIQEFIKEDNQ---KKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIM 621
++ + + +P P + +++ +A+ + F I LT I
Sbjct: 298 KLNKLALAPYKAEFPRPQAFPDWQT----LELRNVTFAYQ--DNGFSVGPINLT----IK 347
Query: 622 KGSKVAVCGSVGSGKSSLLSSIL--------GEIPRISGAAIKVHGKKAYVPQSSWIQTG 673
+G + + G GSGKS+L + +L GEI + G + + Y S + T
Sbjct: 348 RGELLFLIGGNGSGKSTL-AMLLTGLYQPQSGEI-LLDGKPVTAEQPEDYRKLFSAVFT- 404
Query: 674 TIRENILF-------GKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726
+ LF GK + E+ LE + +E+ DG +S + LS GQK
Sbjct: 405 ---DFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLEL-EDGRIS-----NLKLSKGQK 455
Query: 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--KTVLYTTHQLEFLD 784
+R+ L A+ D+ + D+ + D H F Q L+ LL + KT+ +H +
Sbjct: 456 KRLALLLALAEERDILLLDEWAADQDPHF-RREFYQVLLPLLQEMGKTIFAISHDDHYFI 514
Query: 785 AADLVLVMKDGKI 797
AD +L M++G++
Sbjct: 515 HADRLLEMRNGQL 527
|
Length = 547 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1333 | |||
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 99.98 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 99.98 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 99.98 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 99.98 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 99.98 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 99.98 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 99.98 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 99.98 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 99.98 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 99.98 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 99.98 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 99.97 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 99.97 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 99.97 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 99.97 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 99.97 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 99.97 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 99.97 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 99.97 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 99.97 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 99.97 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 99.97 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 99.97 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 99.97 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 99.97 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 99.97 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 99.97 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 99.97 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 99.97 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 99.97 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.97 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 99.97 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 99.97 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 99.97 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 99.97 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 99.97 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 99.97 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 99.97 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 99.97 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 99.97 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 99.97 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 99.97 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.97 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 99.97 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 99.97 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 99.97 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.97 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 99.97 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 99.97 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.96 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 99.96 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 99.96 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.96 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.96 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 99.96 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 99.96 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 99.96 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 99.96 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 99.96 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 99.96 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 99.96 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 99.96 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 99.96 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.95 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 99.95 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.95 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 99.95 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 99.94 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 99.94 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.94 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.94 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 99.93 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.93 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 99.93 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.93 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 99.93 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 99.92 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.92 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 99.92 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 99.91 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 99.91 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.91 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.91 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.9 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 99.9 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 99.9 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.88 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.88 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.88 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.87 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.86 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.86 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.85 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.85 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.85 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.85 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 99.84 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.84 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.84 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.84 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 99.83 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 99.83 | |
| PF00664 | 275 | ABC_membrane: ABC transporter transmembrane region | 99.83 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 99.82 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.82 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.82 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 99.82 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.81 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 99.81 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 99.81 | |
| PF00664 | 275 | ABC_membrane: ABC transporter transmembrane region | 99.81 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 99.8 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 99.8 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.8 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.8 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.79 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.79 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 99.79 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 99.78 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 99.78 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.78 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.78 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 99.78 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 99.77 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 99.77 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.77 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 99.77 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 99.77 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 99.77 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 99.77 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 99.77 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.77 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 99.77 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 99.76 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 99.76 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 99.76 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 99.76 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 99.76 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 99.76 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 99.76 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.76 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 99.76 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.76 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 99.76 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 99.76 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 99.76 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 99.76 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 99.76 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 99.76 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.75 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 99.75 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 99.75 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 99.75 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 99.75 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.75 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.75 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 99.75 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 99.75 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 99.75 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 99.75 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 99.75 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.75 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 99.75 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 99.75 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.75 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.75 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.75 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 99.75 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 99.75 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 99.74 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 99.74 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 99.74 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 99.74 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.74 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 99.74 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 99.74 |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-238 Score=2253.41 Aligned_cols=1119 Identities=41% Similarity=0.710 Sum_probs=1031.6
Q ss_pred CCCcccCCh--hHHHHHHhHHHHHHhhccCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhcC---CCCCHHHHHHHHHHH
Q 000720 201 ISTFASAGV--LSKITFHWLNQLFQRGRIQKLELLHIPPIPQSETANDASSLLEESLRKQKT---DATSLPQVIIHAVWK 275 (1333)
Q Consensus 201 ~~p~~~a~~--~s~~~f~Wl~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~f~~~w~~~~~---~~~~l~~~l~~~~~~ 275 (1333)
++|.+.++. +|+++|||++|++++|||++|+.+|+|+++++|+++.+.++|+++|+++.+ ++|+++++++++||+
T Consensus 122 ~~~~~~~~~~~~S~~~f~W~~~l~~~g~k~~L~~~Dl~~l~~~d~s~~l~~~~~~~w~~~~~~~~~~psl~~al~~~f~~ 201 (1381)
T KOG0054|consen 122 PNPLPEASAGFLSRLTFSWMTPLLRKGYKKPLELKDLWSLSPEDSSETLVKRLESLWEKELGRSGKKPSLLRALLRTFGR 201 (1381)
T ss_pred CCcccccchhHHHHHHHHHHHHHHHhhccCCCChhhcccCChhhhhhHHHHHHHHHHHHHhccccCCcHHHHHHHHHHHH
Confidence 345555555 999999999999999999999999999999999999999999999999853 358999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 276 SLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTV 355 (1333)
Q Consensus 276 ~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~rir~~l~~ 355 (1333)
+++..++++++.+.+.|++|.+|+.+++|+++++. +.+. ||+|+++++++.++++++.+||+|..+++|+|+|+++++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~P~lL~~li~~~~~~~~-~~~~-g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~~ 279 (1381)
T KOG0054|consen 202 TFLLSGIFLFLRDLAGFVGPLLLKKLILFFSEKRL-PLNN-GYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALIS 279 (1381)
T ss_pred HHHHHHHHHHHHHHHccccHHHHHHHHHHhcCCCc-ccch-hHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHH
Confidence 99999999999999999999999999999998743 2455 999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccCCC---ChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 000720 356 LIYKRSMAIKFAGP---SSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSN 432 (1333)
Q Consensus 356 ~iy~K~L~ls~~~~---~~G~i~nlms~D~~~i~~~~~~~~~~w~~plqi~~~l~lL~~~lG~~a~l~gl~~~~~~~~~~ 432 (1333)
+||+|+|++++.++ +.|+|+|+|++|++|+.++++++|.+|.+|+|+++++++||.++| +++++|++++++++|+|
T Consensus 280 ~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~~h~~w~~Plqi~~~l~lLy~~LG-~sa~~G~~~~il~~p~n 358 (1381)
T KOG0054|consen 280 AIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACFLHLLWSAPLQIILALYLLYGLLG-PSALAGVAVMVLLIPLN 358 (1381)
T ss_pred HHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHH
Confidence 99999999999886 899999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 433 TPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLV 512 (1333)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~a~~~~~~~~~p~lv 512 (1333)
.+++++++++|++.|+.+|+|+++|+|+|+|||+|||||||+.|.++|+++|++|++++||..|..+++.++++++|+++
T Consensus 359 ~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~lv 438 (1381)
T KOG0054|consen 359 SFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSPVLV 438 (1381)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CCCCCCCCCCCCCCcc
Q 000720 513 SVITFGVCI-LLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDN-QKKPITEPTSKASDVA 590 (1333)
Q Consensus 513 ~~~tF~~~~-~~~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e-~~~~~~~~~~~~~~~~ 590 (1333)
+++||++|+ ..|+.+||+++|+++++||+|+.|+..+|..++.++|++||++|+++||..+| +++..++.+.++.+.+
T Consensus 439 ~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~~~~~~~~~~ 518 (1381)
T KOG0054|consen 439 SVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVERSPDEAGENA 518 (1381)
T ss_pred HHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccccccCCCCCCCce
Confidence 999999999 77889999999999999999999999999999999999999999999999999 5555444445556778
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCeEEEEcCCCC
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSW 669 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~iayv~Q~~~ 669 (1333)
|+++|++|+|+++ ++.++|+| ||+|++|+++||||++||||||||++|+||+++.+|++ .++|.+|||||+||
T Consensus 519 i~i~~~sfsW~~~-----~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v-~v~gsiaYv~Q~pW 592 (1381)
T KOG0054|consen 519 IEIKNGSFSWDSE-----SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSV-AVNGSVAYVPQQPW 592 (1381)
T ss_pred EEEeeeeEecCCC-----CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceE-EEcCeEEEeccccH
Confidence 9999999999975 45679999 99999999999999999999999999999999999996 99999999999999
Q ss_pred CCCCCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC
Q 000720 670 IQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFS 749 (1333)
Q Consensus 670 i~~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~s 749 (1333)
++|+||||||+||.++|+++|++++++|+|++|++.+|.||+|+|||||.||||||||||+||||+|+|+||||||||+|
T Consensus 593 I~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplS 672 (1381)
T KOG0054|consen 593 IQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLS 672 (1381)
T ss_pred hhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccChHHHHhhcchHHHHHHHhhhhcccCCC
Q 000720 750 AVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVN 829 (1333)
Q Consensus 750 aLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 829 (1333)
|||+|+++|+|++|+++.+++||+|+|||+++++++||.|++|+||+|.+.|+|+|+++ .+..+.++..+.... ..+
T Consensus 673 AVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~-~~~~~~~l~~~~~~~--~~~ 749 (1381)
T KOG0054|consen 673 AVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLK-SGGDFAELAHEEESE--QEE 749 (1381)
T ss_pred hhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHh-cchhHHHHhhccchh--hcc
Confidence 99999999999999999999999999999999999999999999999999999999997 666666663222111 111
Q ss_pred CCCcccccc-cCCcCC--cchhhhhccCCCCc-CC-CCCC-ccccccccCcchHHHHHHHHHHhccchHHHHHHHHHHHH
Q 000720 830 PPQEDKCLS-RVPCQM--SQITEERFARPISC-GE-FSGR-SQDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLF 903 (1333)
Q Consensus 830 ~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~-~~-~~~~-~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~ll~~~l~ 903 (1333)
+.+...... +.+... +.....+...+... .+ ..++ .++|+|+.|.|+|++|+.|+++.+|+..+++++++.++.
T Consensus 750 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~G~v~~~vY~~Y~~a~~g~~~~~~~~~~~v~~ 829 (1381)
T KOG0054|consen 750 EASEKDLESGESSRESESRSLESLSSEEEKSKDEKEEEDKLVQEEERETGKVSWSVYKKYIKAAGGFLLVLLILLLFVLT 829 (1381)
T ss_pred ccccccccccccccchhhhhhhhhcccccccccccchhhHHHHHHHHhcCEeeHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 000000000 000000 00000000011101 11 1222 678889999999999999999977777777778888999
Q ss_pred HHHHHhhHHHHHHhccccc--c---cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccc
Q 000720 904 QALQMGSNYWIAWATDEKR--K---VSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFF 978 (1333)
Q Consensus 904 ~~~~~~~~~wl~~~~~~~~--~---~~~~~~l~vy~~l~~~~~i~~~~~~~~~~~~~~~~s~~L~~~ll~~il~ap~~fF 978 (1333)
+++.++++||+++|++... . .+...|+++|.+++++++++.+++++.+..++.++|++||++|+++++|+||+||
T Consensus 830 ~~~~~~~~~WLs~W~~~~~~~~~~~~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FF 909 (1381)
T KOG0054|consen 830 QVLQIASNYWLSYWTDDGEDNGTTTVSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFF 909 (1381)
T ss_pred HHHHHHHHHHHHHhcCCcccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhc
Confidence 9999999999999996532 1 3567899999999999999999999999999999999999999999999999999
Q ss_pred cccCcchhHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 979 DSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMV 1058 (1333)
Q Consensus 979 d~tp~GrIlnRfs~Di~~vd~~l~~~l~~~~~~~~~~l~~ivv~~~~~~~l~lv~ipl~~~~~~~~~~y~~~srel~rl~ 1058 (1333)
|+||+|||+||||+|++.+|..+|..+..++.++++++++++++++++|+++++++|+.++++++++||++++||++|++
T Consensus 910 dtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLe 989 (1381)
T KOG0054|consen 910 DTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLE 989 (1381)
T ss_pred CCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 000720 1059 GTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRS 1138 (1333)
Q Consensus 1059 ~~~~spl~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~ll~~~~~~~~~~~~~~~~~~ 1138 (1333)
+.+|||+++||+||++|+.|||||++|++|.+++.+++|.+++++|....++||++.|+|+++++++++++++.+..+.+
T Consensus 990 sitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~~~~ 1069 (1381)
T KOG0054|consen 990 SITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVLLPSG 1069 (1381)
T ss_pred hcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888888777665
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCcccCCCCCCCCCCCcccEEEEEEEEEEC
Q 000720 1139 AIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYN 1218 (1333)
Q Consensus 1139 ~~~~g~~gl~l~y~l~l~~~l~~~v~~~~~le~~~~SveRI~~~~~~p~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~ 1218 (1333)
..+||.+|++++|++++++.++|.+|+.+++|++|+|||||.||.++|+|+|+..++.+||++||++|+|+|+|+++||+
T Consensus 1070 ~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYr 1149 (1381)
T KOG0054|consen 1070 LISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYR 1149 (1381)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeC
Confidence 57899999999999999999999999999999999999999999999999887777777999999999999999999999
Q ss_pred CCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeEecccccccccc
Q 000720 1219 PTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGT 1298 (1333)
Q Consensus 1219 ~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isiVpQdp~LF~GT 1298 (1333)
|+.|+|||||||+|+||||||||||||||||||+++|||+.||.+|+|.|||+||++++|||||++++||||||+||+||
T Consensus 1150 p~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGT 1229 (1381)
T KOG0054|consen 1150 PNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGT 1229 (1381)
T ss_pred CCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCCCHHHHHHHHHhCCCCcccccCC
Q 000720 1299 VRTNLDPLEQHSDQEIWEVKISKLLTHKSYQCE 1331 (1333)
Q Consensus 1299 IR~NLdp~~~~sDeeI~~aL~~~~L~~~~~~~~ 1331 (1333)
||+||||+++|||+|||+|||+|||++.+.+-|
T Consensus 1230 vR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p 1262 (1381)
T KOG0054|consen 1230 VRFNLDPFDEYSDDEIWEALERCQLKDVVSSLP 1262 (1381)
T ss_pred cccccCcccccCHHHHHHHHHHhChHHHHhhCC
Confidence 999999999999999999999999999986544
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-179 Score=1805.61 Aligned_cols=1123 Identities=31% Similarity=0.535 Sum_probs=987.0
Q ss_pred hccCCCCcccCChhHHHHHHhHHHHHHhhccCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhcC-CCCCHHHHHHHHHHH
Q 000720 197 LCKNISTFASAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQSETANDASSLLEESLRKQKT-DATSLPQVIIHAVWK 275 (1333)
Q Consensus 197 ~~~~~~p~~~a~~~s~~~f~Wl~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~f~~~w~~~~~-~~~~l~~~l~~~~~~ 275 (1333)
...+.+||++||+|||++|+|++|++++||+++|+.+|||+|+++|+++.+.++|++.|+++.+ ++|+|+++++++||+
T Consensus 222 ~~~~~~pe~~a~~~s~~~F~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~l~~~l~~~~~~ 301 (1622)
T PLN03130 222 GGEQICPERHANIFSRIFFGWMTPLMQLGYKRPLTEKDVWKLDTWDQTETLYRSFQKCWDEELKKPKPWLLRALNNSLGG 301 (1622)
T ss_pred ccCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 3467799999999999999999999999999999999999999999999999999999998743 458999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 276 SLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTV 355 (1333)
Q Consensus 276 ~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~rir~~l~~ 355 (1333)
.++..++++++.+++.+++|++++.+++++.+++. .+. |+.++++++++.++.+++.++|++...+++.++|+.+..
T Consensus 302 ~~~~~~~~~i~~~~~~~~~P~ll~~li~~v~~~~~--~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~ 378 (1622)
T PLN03130 302 RFWLGGFFKIGNDLSQFVGPLLLNLLLESMQNGEP--AWI-GYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVA 378 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--chH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999975432 344 788887777777777788888988899999999999999
Q ss_pred HHHHHHhccccCCC---ChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 000720 356 LIYKRSMAIKFAGP---SSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSN 432 (1333)
Q Consensus 356 ~iy~K~L~ls~~~~---~~G~i~nlms~D~~~i~~~~~~~~~~w~~plqi~~~l~lL~~~lG~~a~l~gl~~~~~~~~~~ 432 (1333)
.+|+|.++++.... ++|+++|+|++|++++.+++..+|.+|..|+++++++++||..+| +++++|++++++++|++
T Consensus 379 ~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~l~~l~~~pl~ii~~~~lL~~~lg-~~~l~g~~v~~l~~~l~ 457 (1622)
T PLN03130 379 AVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQICQQLHTLWSAPFRIIIAMVLLYQQLG-VASLIGSLMLVLMFPIQ 457 (1622)
T ss_pred HHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 99999999987543 789999999999999999999999999999999999999999999 99999998999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 433 TPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLV 512 (1333)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~a~~~~~~~~~p~lv 512 (1333)
..+++++++.++++++.+|+|++.++|+|+|||+||+|+||+.|.+++++.|++|++..++..+..++..++.+..|.++
T Consensus 458 ~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~v 537 (1622)
T PLN03130 458 TFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIPVLV 537 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998888887778888888
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccEE
Q 000720 513 SVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAID 592 (1333)
Q Consensus 513 ~~~tF~~~~~~~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~I~ 592 (1333)
++++|++|.+.++++|++.+|+++++|++++.|+..+|..+..+.++++|++||++||+.+|..+... .+.......|+
T Consensus 538 ~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~~-~~~~~~~~~I~ 616 (1622)
T PLN03130 538 TVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLPN-PPLEPGLPAIS 616 (1622)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccC-CcccCCCCceE
Confidence 99999999999999999999999999999999999999999999999999999999998776321111 11111234699
Q ss_pred EeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCC-CcEEEECCeEEEEcCCCCC
Q 000720 593 IEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRIS-GAAIKVHGKKAYVPQSSWI 670 (1333)
Q Consensus 593 i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~-G~~i~~~g~iayv~Q~~~i 670 (1333)
++|++|+|+++ +++++|+| ||++++||+++|+||+|||||||+++|+|+++|.+ |++ .+++++|||+|+||+
T Consensus 617 ~~nvsf~y~~~-----~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I-~l~~~Iayv~Q~p~L 690 (1622)
T PLN03130 617 IKNGYFSWDSK-----AERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASV-VIRGTVAYVPQVSWI 690 (1622)
T ss_pred EEeeEEEccCC-----CCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceE-EEcCeEEEEcCcccc
Confidence 99999999864 34678999 99999999999999999999999999999999999 776 899999999999999
Q ss_pred CCCCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCC
Q 000720 671 QTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSA 750 (1333)
Q Consensus 671 ~~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~sa 750 (1333)
+++||||||+||.++++++|++++++|++.+|++.+|+||+|.+|++|.+|||||||||+||||+|++||||||||||||
T Consensus 691 fngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSA 770 (1622)
T PLN03130 691 FNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSA 770 (1622)
T ss_pred CCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccChHHHHhhcchHHHHHHHhhhhcccCCCC
Q 000720 751 VDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNP 830 (1333)
Q Consensus 751 LD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 830 (1333)
||++++++++++++++.++++|+|+|||+++.++.||+|++|++|+|++.|+++++.+ ....+.++...+....+..+.
T Consensus 771 LD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~-~~~~~~~l~~~~~~~~~~~~~ 849 (1622)
T PLN03130 771 LDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSN-NGPLFQKLMENAGKMEEYVEE 849 (1622)
T ss_pred cCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHh-cchhHHHHHHhcccccccccc
Confidence 9999999999999988888999999999999999999999999999999999999987 555566555433211100000
Q ss_pred CCccc-ccccCCcCCcch-hh-hhccC-CCCcCCCCCC-ccccccccCcchHHHHHHHHHHhccchHHHHHHHHHHHHHH
Q 000720 831 PQEDK-CLSRVPCQMSQI-TE-ERFAR-PISCGEFSGR-SQDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQA 905 (1333)
Q Consensus 831 ~~~~~-~~~~~~~~~~~~-~~-~~~~~-~~~~~~~~~~-~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~ll~~~l~~~ 905 (1333)
..+.. ............ .. .+... ....+..... .++|+++.|.+++++|+.|+++.++.+.+.+++++.++.++
T Consensus 850 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~ 929 (1622)
T PLN03130 850 NGEEEDDQTSSKPVANGNANNLKKDSSSKKKSKEGKSVLIKQEERETGVVSWKVLERYKNALGGAWVVMILFLCYVLTEV 929 (1622)
T ss_pred cccccccccccccccccccccccccccccccccccchhhhhHHHHhcCccCHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 00000 000000000000 00 00000 0000001112 45678889999999999999987665555555666677788
Q ss_pred HHHhhHHHHHHhccccc--ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCc
Q 000720 906 LQMGSNYWIAWATDEKR--KVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPS 983 (1333)
Q Consensus 906 ~~~~~~~wl~~~~~~~~--~~~~~~~l~vy~~l~~~~~i~~~~~~~~~~~~~~~~s~~L~~~ll~~il~ap~~fFd~tp~ 983 (1333)
+.+++++|+++|++... ......|+++|++++++..++.+++.+++...+.++++++|++++++++++|++|||++|+
T Consensus 930 ~~~~~~~wl~~w~~~~~~~~~~~~~~~~i~~~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~ 1009 (1622)
T PLN03130 930 FRVSSSTWLSEWTDQGTPKTHGPLFYNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPL 1009 (1622)
T ss_pred HHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCc
Confidence 88999999999986432 2234568889999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhc
Q 000720 984 SRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKA 1063 (1333)
Q Consensus 984 GrIlnRfs~Di~~vd~~l~~~l~~~~~~~~~~l~~ivv~~~~~~~l~lv~ipl~~~~~~~~~~y~~~srel~rl~~~~~s 1063 (1333)
|+|+|||++|++.+|..++..+..++..++.+++.++++++++|...++++|+.+++++++++|.+++|+++|++.++++
T Consensus 1010 G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s 1089 (1622)
T PLN03130 1010 GRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRS 1089 (1622)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999998777778888888888899999999999999999999
Q ss_pred hHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC----C
Q 000720 1064 PILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRS----A 1139 (1333)
Q Consensus 1064 pl~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~ll~~~~~~~~~~~~~~~~~~----~ 1139 (1333)
|+++|++|+++|+.|||+|+++++|.+++.+..|.+.+..+.....++|++.++++++++++.+...+.+..... .
T Consensus 1090 ~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~i~~~~~~~v~~~~~~~~~~ 1169 (1622)
T PLN03130 1090 PVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSNRWLAIRLETLGGLMIWLTASFAVMQNGRAENQA 1169 (1622)
T ss_pred hHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccch
Confidence 999999999999999999999999999999999999999999999999999999998876655444333322111 1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCcccCCCCCCCCCCCcccEEEEEEEEEECC
Q 000720 1140 IDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNP 1219 (1333)
Q Consensus 1140 ~~~g~~gl~l~y~l~l~~~l~~~v~~~~~le~~~~SveRI~~~~~~p~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~ 1219 (1333)
..++.+|++++|++.+...+.++++.+.++|+.++|+||+.+|+++|+|++...++..+++.||.+|.|+|+||+|+|++
T Consensus 1170 ~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~ 1249 (1622)
T PLN03130 1170 AFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRP 1249 (1622)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCC
Confidence 12678999999999999999999999999999999999999999999887654344456678999999999999999998
Q ss_pred CCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeEecccccccccch
Q 000720 1220 TLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTV 1299 (1333)
Q Consensus 1220 ~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isiVpQdp~LF~GTI 1299 (1333)
+.|+||||+||+|+||||||||||||||||||+++|+|+|||++|+|+|||+||+++++++||++|++|||||+||+|||
T Consensus 1250 ~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTI 1329 (1622)
T PLN03130 1250 ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTV 1329 (1622)
T ss_pred CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccH
Confidence 87789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCCCHHHHHHHHHhCCCCcccccCC
Q 000720 1300 RTNLDPLEQHSDQEIWEVKISKLLTHKSYQCE 1331 (1333)
Q Consensus 1300 R~NLdp~~~~sDeeI~~aL~~~~L~~~~~~~~ 1331 (1333)
|+||||+++++|+|||+||++||+++.+.+.|
T Consensus 1330 reNLd~~~~~tdeei~~Al~~a~l~~~I~~lp 1361 (1622)
T PLN03130 1330 RFNLDPFNEHNDADLWESLERAHLKDVIRRNS 1361 (1622)
T ss_pred HHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCc
Confidence 99999999999999999999999998876654
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-176 Score=1776.22 Aligned_cols=1122 Identities=30% Similarity=0.527 Sum_probs=984.2
Q ss_pred ccCCCCcccCChhHHHHHHhHHHHHHhhccCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHH
Q 000720 198 CKNISTFASAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQSETANDASSLLEESLRKQKT-DATSLPQVIIHAVWKS 276 (1333)
Q Consensus 198 ~~~~~p~~~a~~~s~~~f~Wl~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~f~~~w~~~~~-~~~~l~~~l~~~~~~~ 276 (1333)
+.+.+||++||+|||++|+|++|++++||+++|+.+|||+|+++|+++.+.++|++.|+++.+ ++++|+++++++|++.
T Consensus 223 ~~~~~pe~~a~~~s~~~f~w~~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~l~~~l~~~~~~~ 302 (1495)
T PLN03232 223 GENICPERYASIFSRIYFSWMTPLMQLGYRKPITEKDVWQLDQWDQTETLIKRFQRCWTEESRRPKPWLLRALNNSLGGR 302 (1495)
T ss_pred cCCCCccccCCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChhhhHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999999998754 4589999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 277 LALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVL 356 (1333)
Q Consensus 277 ~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~rir~~l~~~ 356 (1333)
++..++++++.+++.+++|++++.+++++++++. ... |+.++++++++.++.+++.++|++...+++.++|+.+...
T Consensus 303 ~~~~~~~~i~~~~~~~~~P~ll~~li~~~~~~~~--~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~l~~~ 379 (1495)
T PLN03232 303 FWLGGIFKIGHDLSQFVGPVILSHLLQSMQEGDP--AWV-GYVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTLVAA 379 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--cch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999976432 334 8888888888888889999999999999999999999999
Q ss_pred HHHHHhccccCCC---ChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 000720 357 IYKRSMAIKFAGP---SSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNT 433 (1333)
Q Consensus 357 iy~K~L~ls~~~~---~~G~i~nlms~D~~~i~~~~~~~~~~w~~plqi~~~l~lL~~~lG~~a~l~gl~~~~~~~~~~~ 433 (1333)
+|+|.++++.... ++|+++|+|++|++++.++...+|.+|..|++++++++++|..+| ++++++++++++++|++.
T Consensus 380 i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~~~l~~l~~~p~~ii~~~~~l~~~lg-~~~l~~~~v~~l~~pl~~ 458 (1495)
T PLN03232 380 IFHKSLRLTHEARKNFASGKVTNMITTDANALQQIAEQLHGLWSAPFRIIVSMVLLYQQLG-VASLFGSLILFLLIPLQT 458 (1495)
T ss_pred HHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHH
Confidence 9999999987543 789999999999999999999999999999999999999999999 999999988889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 434 PLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLVS 513 (1333)
Q Consensus 434 ~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~a~~~~~~~~~p~lv~ 513 (1333)
.+++++++.++++++.+|+|.+.++|+++|||+||+|+||+.|.+++++.|++|++..++..+..+...++.+..|.+++
T Consensus 459 ~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (1495)
T PLN03232 459 LIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIPVVVT 538 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998888877777777888888
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccEEE
Q 000720 514 VITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDI 593 (1333)
Q Consensus 514 ~~tF~~~~~~~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~I~i 593 (1333)
+++|++|.+.++++|++.+|+++++++.+..|+..+|..+..+.++++|++||++||+.+|+.+... .+.......|++
T Consensus 539 ~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~-~~~~~~~~~I~~ 617 (1495)
T PLN03232 539 LVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQN-PPLQPGAPAISI 617 (1495)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccc-CCcCCCCCcEEE
Confidence 8999999999999999999999999999999999999999999999999999999998776321111 111112347999
Q ss_pred eeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCeEEEEcCCCCCCC
Q 000720 594 EAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQT 672 (1333)
Q Consensus 594 ~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~iayv~Q~~~i~~ 672 (1333)
+|++|+|+.+ +++++|+| ||++++||+++|+||+|||||||+++|+|+++|.+|++..+++++|||+|+||+++
T Consensus 618 ~~vsF~y~~~-----~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~ 692 (1495)
T PLN03232 618 KNGYFSWDSK-----TSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFN 692 (1495)
T ss_pred EeeEEEcCCC-----CCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCcccccc
Confidence 9999999864 34678999 99999999999999999999999999999999999987788999999999999999
Q ss_pred CCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCC
Q 000720 673 GTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVD 752 (1333)
Q Consensus 673 ~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD 752 (1333)
+||||||+||.++++++|++++++|++.+|++.+|+||+|.+||+|.+|||||||||+||||+|++||||||||||||||
T Consensus 693 gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD 772 (1495)
T PLN03232 693 ATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALD 772 (1495)
T ss_pred ccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccChHHHHhhcchHHHHHHHhhhhcccCCCCCC
Q 000720 753 AHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQ 832 (1333)
Q Consensus 753 ~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (1333)
++++++++++++.+.++++|+|+|||+++.++.||+|++|++|+|++.|+++++.+ .+..+.++...+....+..+..+
T Consensus 773 ~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~-~~~~~~~l~~~~~~~~~~~~~~~ 851 (1495)
T PLN03232 773 AHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSK-SGSLFKKLMENAGKMDATQEVNT 851 (1495)
T ss_pred HHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHh-cchhHHHHHHhcccccccccccc
Confidence 99999999999988788999999999999999999999999999999999999987 55556555543321110000000
Q ss_pred cccccccCCcCCcchhhhhccCCCCcCCC-CCC-ccccccccCcchHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhh
Q 000720 833 EDKCLSRVPCQMSQITEERFARPISCGEF-SGR-SQDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGS 910 (1333)
Q Consensus 833 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~ll~~~l~~~~~~~~ 910 (1333)
..+...........+............+. ... .++|+++.|.+++++|+.|+++.++++.+.+++++.++.+++.+++
T Consensus 852 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vy~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 931 (1495)
T PLN03232 852 NDENILKLGPTVTIDVSERNLGSTKQGKRGRSVLVKQEERETGIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVLRVSS 931 (1495)
T ss_pred cccccccccccccccccccccccccccccchhhhhhHHHHhcCcccHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000000000000000000000010 111 5678888999999999999998766555555566667778888899
Q ss_pred HHHHHHhccccc--ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCcchhHH
Q 000720 911 NYWIAWATDEKR--KVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILN 988 (1333)
Q Consensus 911 ~~wl~~~~~~~~--~~~~~~~l~vy~~l~~~~~i~~~~~~~~~~~~~~~~s~~L~~~ll~~il~ap~~fFd~tp~GrIln 988 (1333)
++|+++|++... ......|+++|++++++..++.+++.+++...+.++++++|++++++++++|++|||++|+|+|+|
T Consensus 932 ~~wl~~w~~~~~~~~~~~~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~iln 1011 (1495)
T PLN03232 932 STWLSIWTDQSTPKSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVIN 1011 (1495)
T ss_pred HHHHHHHhcccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHH
Confidence 999999985332 223567899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhchHHHH
Q 000720 989 RCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHH 1068 (1333)
Q Consensus 989 Rfs~Di~~vd~~l~~~l~~~~~~~~~~l~~ivv~~~~~~~l~lv~ipl~~~~~~~~~~y~~~srel~rl~~~~~spl~~~ 1068 (1333)
||++|++.+|+.++..+..++..++.+++.++++++.++...++++|+.+++++++.+|.+++|+++|.+..+++|+++|
T Consensus 1012 r~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~ 1091 (1495)
T PLN03232 1012 RFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQ 1091 (1495)
T ss_pred HhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 99999999999999999999999999999998888888777777788877788888999999999999999999999999
Q ss_pred HHHHhcchHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-----ChH
Q 000720 1069 FSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAI-----DPS 1143 (1333)
Q Consensus 1069 ~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~ll~~~~~~~~~~~~~~~~~~~~-----~~g 1143 (1333)
++|+++|+.|||+|+++++|.+++.+..|.+.+..+.....++|+..++++++++++.+...+.+.. .+.. .++
T Consensus 1092 ~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~ 1170 (1495)
T PLN03232 1092 FGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGVMIWLTATFAVLR-NGNAENQAGFAS 1170 (1495)
T ss_pred HHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cccccccccchH
Confidence 9999999999999999999999999999999999999889999999999988765544433333221 2221 256
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCcccCCCCCCCCCCCcccEEEEEEEEEECCCCCC
Q 000720 1144 LAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPM 1223 (1333)
Q Consensus 1144 ~~gl~l~y~l~l~~~l~~~v~~~~~le~~~~SveRI~~~~~~p~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~p~ 1223 (1333)
.+|++++|+..+...+.++++.++++|+.++|+|||.+|++.|+|++...++..+++.||.+|+|+|+||+|+|+++.|+
T Consensus 1171 ~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~~ 1250 (1495)
T PLN03232 1171 TMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPP 1250 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCCc
Confidence 78889999999999999999999999999999999999999988865432333456689999999999999999888778
Q ss_pred ccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeEecccccccccchhhhc
Q 000720 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNL 1303 (1333)
Q Consensus 1224 VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isiVpQdp~LF~GTIR~NL 1303 (1333)
||||+||+|+||||||||||||||||||+++|+|+|||++|+|+|||+||+++++++||++|++|||||+||+||||+||
T Consensus 1251 vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL 1330 (1495)
T PLN03232 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNI 1330 (1495)
T ss_pred ccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHhCCCCcccccCC
Q 000720 1304 DPLEQHSDQEIWEVKISKLLTHKSYQCE 1331 (1333)
Q Consensus 1304 dp~~~~sDeeI~~aL~~~~L~~~~~~~~ 1331 (1333)
||+++++|+|||+||++|||++.+.+.|
T Consensus 1331 ~~~~~~sdeei~~al~~a~l~~~I~~lp 1358 (1495)
T PLN03232 1331 DPFSEHNDADLWEALERAHIKDVIDRNP 1358 (1495)
T ss_pred CCCCCCCHHHHHHHHHHcCCHHHHHhCc
Confidence 9999999999999999999998876654
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-174 Score=1757.20 Aligned_cols=1120 Identities=31% Similarity=0.559 Sum_probs=981.6
Q ss_pred cCCCCcccCChhHHHHHHhHHHHHHhhccCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhc-------------------
Q 000720 199 KNISTFASAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQSETANDASSLLEESLRKQK------------------- 259 (1333)
Q Consensus 199 ~~~~p~~~a~~~s~~~f~Wl~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~f~~~w~~~~------------------- 259 (1333)
.+.+||++||++||++|||+||++++||+++|+.+|||+++++++++.+.++|++.|+++.
T Consensus 199 ~~~~~e~~a~~~s~~~f~W~~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 278 (1522)
T TIGR00957 199 PNPCPESSASFLSRITFWWITGMAVYGYRQPLEESDLWSLNKEDTSEMVVPVLVENWKKECKKTRKQPVSAVYGKKDPSK 278 (1522)
T ss_pred CCCCCcccCCHHHHHHHHHhHHHHHHHhcCCCChhhccCCCHhHhHHHHHHHHHHHHHHHHhhccccccccccccccccc
Confidence 3468999999999999999999999999999999999999999999999999999998651
Q ss_pred -----------------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhH
Q 000720 260 -----------------------TDATSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHY 316 (1333)
Q Consensus 260 -----------------------~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~ 316 (1333)
.++++|+++++++||+.++..++++++.+++.+++|++++.+++|++++.. +...
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~~~~~~l~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~-~~~~- 356 (1522)
T TIGR00957 279 PKGSSQLDANEEVEALIVKSPHKPRKPSLFKVLYKTFGPYFLMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMA-PDWQ- 356 (1522)
T ss_pred ccccccccccccccccccccccccCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-ccch-
Confidence 023689999999999999999999999999999999999999999976543 1334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC---ChHHHHHHHHhhHHHHHHHHHHHH
Q 000720 317 GLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAGP---SSGIIINMINVDVERIGDFFLYIH 393 (1333)
Q Consensus 317 g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~rir~~l~~~iy~K~L~ls~~~~---~~G~i~nlms~D~~~i~~~~~~~~ 393 (1333)
||.+++++++..++.+++.++|+|...++++++|++|.+.||+|.|+++.... ++|+++|+|++|++|+.++..++|
T Consensus 357 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~~ 436 (1522)
T TIGR00957 357 GYFYTGLLFVCACLQTLILHQYFHICFVSGMRIKTAVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLATYIN 436 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhcCCCCHHHHHHHHHHhHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999987654 789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchH
Q 000720 394 RIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWE 473 (1333)
Q Consensus 394 ~~w~~plqi~~~l~lL~~~lG~~a~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE 473 (1333)
.+|..|+++++++++||..+| +++++|++++++++|++..+++.++++++++|+.+|+|++.++|+|+|||+||+|+||
T Consensus 437 ~~~~~~~~i~~~~~ll~~~~g-~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e 515 (1522)
T TIGR00957 437 MIWSAPLQVILALYFLWLNLG-PSVLAGVAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWE 515 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 999999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 474 QEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILL--KTPLTSGAVLSALATFRILQEPIYNLPE 551 (1333)
Q Consensus 474 ~~f~~~i~~~R~~E~~~l~~~~~~~a~~~~~~~~~p~lv~~~tF~~~~~~--~~~Lt~~~vft~lalf~~l~~pl~~lp~ 551 (1333)
+.|.+++++.|++|++..++..+..+...+.++.+|.++.+++|++|.+. ++.|+++.+|+++++|++++.|+..+|.
T Consensus 516 ~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~ 595 (1522)
T TIGR00957 516 LAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTPFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPM 595 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998888877777788999999999999876 4679999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCC-CCCCCCCCC-CCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEE
Q 000720 552 LISMIAQTKVSLYRIQEFIKEDNQ-KKPITEPTS-KASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAV 628 (1333)
Q Consensus 552 ~i~~~~~a~vS~~RI~~fL~~~e~-~~~~~~~~~-~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~i 628 (1333)
.++.+.++++|++||++||+.+|. ++..+.... ......|+++|++|+|+.+ ++++|+| |+++++||+++|
T Consensus 596 ~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~------~~~~l~~isl~i~~G~~v~I 669 (1522)
T TIGR00957 596 VISSIVQASVSLKRLRIFLSHEELEPDSIERRTIKPGEGNSITVHNATFTWARD------LPPTLNGITFSIPEGALVAV 669 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcccccccccccccCCCCCCcEEEEEeEEEcCCC------CCceeeeeEEEEcCCCEEEE
Confidence 999999999999999999987762 221111111 1122379999999999753 3578999 999999999999
Q ss_pred ECCCCCChhHHHHHHhCCCcCCCCcEEEECCeEEEEcCCCCCCCCCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcC
Q 000720 629 CGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWAD 708 (1333)
Q Consensus 629 vG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~iayv~Q~~~i~~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~ 708 (1333)
+||||||||||+++|+|+++|.+|++ .++|++|||||+||++++||+|||.||.++++++|++++++|++.+|++.+|+
T Consensus 670 vG~~GsGKSTLl~~l~g~~~~~~G~i-~~~g~i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~ 748 (1522)
T TIGR00957 670 VGQVGCGKSSLLSALLAEMDKVEGHV-HMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPS 748 (1522)
T ss_pred ECCCCCCHHHHHHHHhCCCccCCcEE-EECCEEEEEcCCccccCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCC
Confidence 99999999999999999999999996 89999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHH--HHhCCCeEEEecCchhhhhcC
Q 000720 709 GDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLM--GLLSQKTVLYTTHQLEFLDAA 786 (1333)
Q Consensus 709 g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~--~~~~~~TvIlvtH~~~~l~~a 786 (1333)
||+|.+|++|.+|||||||||+||||+|++||+|||||||||||+++++++++.++. +..+++|+|+|||+++.++.|
T Consensus 749 g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~ 828 (1522)
T TIGR00957 749 GDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQV 828 (1522)
T ss_pred CCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhC
Confidence 999999999999999999999999999999999999999999999999999998874 456789999999999999999
Q ss_pred CEEEEEeCCeEEEccChHHHHhhcchHHHHHHHhhhhcccCCC-CC-------Ccccccc--cC--------CcC-----
Q 000720 787 DLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVN-PP-------QEDKCLS--RV--------PCQ----- 843 (1333)
Q Consensus 787 D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~--~~--------~~~----- 843 (1333)
|+|++|++|+|++.|+++++.+ ....+.++...+....+... .. .+..... +. ...
T Consensus 829 D~ii~l~~G~i~~~g~~~~l~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 907 (1522)
T TIGR00957 829 DVIIVMSGGKISEMGSYQELLQ-RDGAFAEFLRTYAPDEQQGHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQL 907 (1522)
T ss_pred CEEEEecCCeEEeeCCHHHHHh-cchhHHHHHHhhccccccccccccccccccccccccccccccccccccccchhhhhc
Confidence 9999999999999999999987 44455555443221110000 00 0000000 00 000
Q ss_pred --Ccchhhhh-----ccCCCCc-C-C-CCCC-ccccccccCcchHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhHH
Q 000720 844 --MSQITEER-----FARPISC-G-E-FSGR-SQDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNY 912 (1333)
Q Consensus 844 --~~~~~~~~-----~~~~~~~-~-~-~~~~-~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~ll~~~l~~~~~~~~~~ 912 (1333)
........ ...+... + + ...+ .++|+++.|++++++|+.|+++.+ +..+++++++.++.+++..+.++
T Consensus 908 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~Y~~~~g-~~~~~~~~~~~~~~~~~~~~~~~ 986 (1522)
T TIGR00957 908 SASSSDSGDQSRHHGSSAELQKAEAKEETWKLMEADKAQTGQVELSVYWDYMKAIG-LFITFLSIFLFVCNHVSALASNY 986 (1522)
T ss_pred cccccccccccccccccccccccccccchhhhHHHHHHhcCcccHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000 0000000 0 0 0112 456777889999999999999874 34444445555677788899999
Q ss_pred HHHHhccccc----ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCcchhHH
Q 000720 913 WIAWATDEKR----KVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILN 988 (1333)
Q Consensus 913 wl~~~~~~~~----~~~~~~~l~vy~~l~~~~~i~~~~~~~~~~~~~~~~s~~L~~~ll~~il~ap~~fFd~tp~GrIln 988 (1333)
|+++|++... ..+...|+++|++++++..++.+++.+++...+.++++++|++++++++++|++|||++|+|+|+|
T Consensus 987 ~l~~w~~~~~~~~~~~~~~~~~~iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~iln 1066 (1522)
T TIGR00957 987 WLSLWTDDPMVNGTQNNTSLRLSVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVN 1066 (1522)
T ss_pred HHHHHhccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHH
Confidence 9999986321 122456788999999999999999989999999999999999999999999999999999999999
Q ss_pred HHhccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhchHHHH
Q 000720 989 RCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHH 1068 (1333)
Q Consensus 989 Rfs~Di~~vd~~l~~~l~~~~~~~~~~l~~ivv~~~~~~~l~lv~ipl~~~~~~~~~~y~~~srel~rl~~~~~spl~~~ 1068 (1333)
||++|++.+|+.++..+..++..++.+++.++++++.+|+++++++|+++++++++++|.+++|+++|++.++++|+++|
T Consensus 1067 R~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~ 1146 (1522)
T TIGR00957 1067 RFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSH 1146 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 99999999999999999999999999999999999999988888888888899999999999999999999999999999
Q ss_pred HHHHhcchHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHH
Q 000720 1069 FSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLA 1148 (1333)
Q Consensus 1069 ~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~ll~~~~~~~~~~~~~~~~~~~~~~g~~gl~ 1148 (1333)
++|+++|+.|||+|++|++|.+++.+..|.++++.+.....++|+..++++++++++.++..+.+ ...+.+++|.+|++
T Consensus 1147 ~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~g~l~~~ 1225 (1522)
T TIGR00957 1147 FNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFAALFAV-ISRHSLSAGLVGLS 1225 (1522)
T ss_pred HHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988765444433332 23456899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCcccCCCCCCCCCCCcccEEEEEEEEEECCCCCCccccc
Q 000720 1149 ATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGI 1228 (1333)
Q Consensus 1149 l~y~l~l~~~l~~~v~~~~~le~~~~SveRI~~~~~~p~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~p~VLk~I 1228 (1333)
++|++.+...+.++++.++++|+.++|+|||.+|++.|+|++...++..+++.||.+|+|+|+||+|+|+++.++|||||
T Consensus 1226 l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~vL~~i 1305 (1522)
T TIGR00957 1226 VSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHI 1305 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCcccccce
Confidence 99999999999999999999999999999999999988876533334456678999999999999999988777899999
Q ss_pred eEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeEecccccccccchhhhcCCCCC
Q 000720 1229 TCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQ 1308 (1333)
Q Consensus 1229 s~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isiVpQdp~LF~GTIR~NLdp~~~ 1308 (1333)
||+|+||||||||||||||||||+++|+|+|||++|+|+|||+||+++++++||++|++|||||+||+||||+||||+++
T Consensus 1306 s~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~ 1385 (1522)
T TIGR00957 1306 NVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQ 1385 (1522)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhCCCCcccccCC
Q 000720 1309 HSDQEIWEVKISKLLTHKSYQCE 1331 (1333)
Q Consensus 1309 ~sDeeI~~aL~~~~L~~~~~~~~ 1331 (1333)
++|||||+||++|||++.+.+.|
T Consensus 1386 ~sdeei~~al~~a~l~~~I~~lp 1408 (1522)
T TIGR00957 1386 YSDEEVWWALELAHLKTFVSALP 1408 (1522)
T ss_pred CCHHHHHHHHHHcCcHHHHhhCc
Confidence 99999999999999998876553
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-169 Score=1705.79 Aligned_cols=1118 Identities=26% Similarity=0.436 Sum_probs=962.4
Q ss_pred CCCcccCChhHHHHHHhHHHHHHhhccCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhc---CCCCCHHHHHHHHHHHHH
Q 000720 201 ISTFASAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQSETANDASSLLEESLRKQK---TDATSLPQVIIHAVWKSL 277 (1333)
Q Consensus 201 ~~p~~~a~~~s~~~f~Wl~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~f~~~w~~~~---~~~~~l~~~l~~~~~~~~ 277 (1333)
.+||++||+|||++|||+||++++||+++|+.||||+|+++++++.+.++|++.|+++. .++++|+++++++|++.+
T Consensus 3 ~~pe~~a~~~s~~~F~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~L~~~l~~~~~~~~ 82 (1490)
T TIGR01271 3 RSPVEKANFLSKLFFWWTRPILRKGYRQKLELSDIYQIPSFDSADNLSERLEREWDRELASAKKNPKLLNALRRCFFWRF 82 (1490)
T ss_pred CCccccCCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChHHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999998753 245899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 278 ALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLI 357 (1333)
Q Consensus 278 ~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~rir~~l~~~i 357 (1333)
+..++++++.+++.+++|++++++++|++..+.. ....||.++++++++.++.+++.++++|...++++++|++|+++|
T Consensus 83 ~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~i 161 (1490)
T TIGR01271 83 VFYGILLYFGEATKAVQPLLLGRIIASYDPFNAP-EREIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLI 161 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999643321 222389999999999999999999999999999999999999999
Q ss_pred HHHHhccccCCC---ChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 000720 358 YKRSMAIKFAGP---SSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTP 434 (1333)
Q Consensus 358 y~K~L~ls~~~~---~~G~i~nlms~D~~~i~~~~~~~~~~w~~plqi~~~l~lL~~~lG~~a~l~gl~~~~~~~~~~~~ 434 (1333)
|+|.|+++..+. ++|+++|+|++|++++.+++.++|.+|..|+++++++++||.++| +++++|++++++++|++.+
T Consensus 162 y~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~~~~~~~pi~i~~~~~lL~~~~G-~~~l~~l~v~~~~~~~~~~ 240 (1490)
T TIGR01271 162 YKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALAHFVWIAPLQVILLMGLIWELLE-VNGFCGLGFLILLALFQAC 240 (1490)
T ss_pred HHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 999999986543 789999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 435 LANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLVSV 514 (1333)
Q Consensus 435 ~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~a~~~~~~~~~p~lv~~ 514 (1333)
+++++.++++++|+.+|+|++.++|+|+|||+||+|+||+.|.+++++.|++|++.+++..+..+...++++..|.++++
T Consensus 241 ~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (1490)
T TIGR01271 241 LGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFFSGFFVVF 320 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998888888888889999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccEEE
Q 000720 515 ITFGVCILLKTPLTSGAVLSALATFRILQEPIY-NLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDI 593 (1333)
Q Consensus 515 ~tF~~~~~~~~~Lt~~~vft~lalf~~l~~pl~-~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~I~i 593 (1333)
++|++|.+.++ ++++.+||++++|++++.|+. .+|..+..+.++++|++||++||..+|..+... ...+..|++
T Consensus 321 ~~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~----~~~~~~i~~ 395 (1490)
T TIGR01271 321 LSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLEY----NLTTTEVEM 395 (1490)
T ss_pred HHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc----cCCCCceEE
Confidence 99999988754 789999999999999999985 799999999999999999999999877322111 112346999
Q ss_pred eeeEEEcCCccc---------c-----cC------------CCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCC
Q 000720 594 EAGEYAWDAREE---------N-----FK------------KPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGE 646 (1333)
Q Consensus 594 ~~~~fsw~~~~~---------~-----~~------------~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~ 646 (1333)
+|++|+|+...+ . .. ..+++|+| ||++++||+++|+|||||||||||++|+|+
T Consensus 396 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~ 475 (1490)
T TIGR01271 396 VNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGE 475 (1490)
T ss_pred ecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 999999964200 0 00 02468999 999999999999999999999999999999
Q ss_pred CcCCCCcEEEECCeEEEEcCCCCCCCCCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHH
Q 000720 647 IPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1333)
Q Consensus 647 ~~~~~G~~i~~~g~iayv~Q~~~i~~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQk 726 (1333)
++|++|++ .++|++|||+|+||++++||+|||+||.++++++|++++++|++.+|++.+|.||.|.+|++|.+||||||
T Consensus 476 ~~~~~G~i-~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqk 554 (1490)
T TIGR01271 476 LEPSEGKI-KHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQR 554 (1490)
T ss_pred CCCCCceE-EECCEEEEEeCCCccCCccHHHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHH
Confidence 99999996 89999999999999999999999999998888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccChHHH
Q 000720 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDL 806 (1333)
Q Consensus 727 qRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~~~l 806 (1333)
|||+||||+|++|++|||||||||||+++++++++.++.+..+++|+|+|||+++.++.||+|++|++|+|++.|+++++
T Consensus 555 qRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l 634 (1490)
T TIGR01271 555 ARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSEL 634 (1490)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999999999999999999999999888777789999999999999988999999999999999999999
Q ss_pred HhhcchHHHHHHHhhh---h---c--------------cc--C-----C-C-------CCCcc-c---------------
Q 000720 807 IADQNSELVRQMKAHR---K---S--------------LD--Q-----V-N-------PPQED-K--------------- 835 (1333)
Q Consensus 807 ~~~~~~~~~~~~~~~~---~---~--------------~~--~-----~-~-------~~~~~-~--------------- 835 (1333)
.. ....+........ + . .+ . . . +..+. .
T Consensus 635 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (1490)
T TIGR01271 635 QA-KRPDFSSLLLGLEAFDNFSAERRNSILTETLRRVSIDGDSTVFSGPETIKQSFKQPPPEFAEKRKQSIILNPIASAR 713 (1490)
T ss_pred Hh-cChHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 76 3333333321000 0 0 00 0 0 0 00000 0
Q ss_pred ---------------c-cccC-CcC-------C-------cchhh---------------------hh---c---c-C--
Q 000720 836 ---------------C-LSRV-PCQ-------M-------SQITE---------------------ER---F---A-R-- 854 (1333)
Q Consensus 836 ---------------~-~~~~-~~~-------~-------~~~~~---------------------~~---~---~-~-- 854 (1333)
. .... +.. + ..+.. .. . . .
T Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (1490)
T TIGR01271 714 KFSFVQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGEESLPRGNQYHHGLQHQAQRRQSVLQLMTHSNRGENRREQLQ 793 (1490)
T ss_pred ccccccccccccccccccchhcccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccc
Confidence 0 0000 000 0 00000 00 0 0 0
Q ss_pred ----------C-----CC--------cCC-----------C--CCC-ccccccccCcchHHHHHHHHHHhccchHHHHHH
Q 000720 855 ----------P-----IS--------CGE-----------F--SGR-SQDEDTELGRVKWTVYSAFITLVYKGALVPVIL 897 (1333)
Q Consensus 855 ----------~-----~~--------~~~-----------~--~~~-~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~l 897 (1333)
+ .. .++ . ... .++|+++.|.++|++|+.|+++.+++.++++++
T Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vY~~Y~~~~g~~~~~~~~~ 873 (1490)
T TIGR01271 794 TSFRKKSSITQQNELASELDIYSRRLSKDSVYEISEEINEEDLKECFADERENVFETTTWNTYLRYITTNRNLVFVLIFC 873 (1490)
T ss_pred cccccccccccccccccccccccccccccccccccccchhhhhhhhhhHHHHhhcCcccHHHHHHHHHhcCcHHHHHHHH
Confidence 0 00 000 0 001 344667889999999999999876555555555
Q ss_pred HHHHHHHHHHHhhHHHHHHhcccc--------c-c-----------c-chhhH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 898 LCQVLFQALQMGSNYWIAWATDEK--------R-K-----------V-SREQL-IGVFIFLSGGSSFFILGRAVLLATIA 955 (1333)
Q Consensus 898 l~~~l~~~~~~~~~~wl~~~~~~~--------~-~-----------~-~~~~~-l~vy~~l~~~~~i~~~~~~~~~~~~~ 955 (1333)
++.++.+++..+.++|+.+|.+.. . . . ...+| +++|++++++..++.+++.+++...+
T Consensus 874 ~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 953 (1490)
T TIGR01271 874 LVIFLAEVAASLLGLWLITDNPSAPNYVDQQHANASSPDVQKPVIITPTSAYYIFYIYVGTADSVLALGFFRGLPLVHTL 953 (1490)
T ss_pred HHHHHHHHHHHHhhHHHHhcccccccccccccccCCCccccccccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666778899999999998776311 0 0 0 11223 45566666566677888999999999
Q ss_pred HHHHHHHHHHHHHHHhcCccccccccCcchhHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 000720 956 IKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLV 1035 (1333)
Q Consensus 956 ~~~s~~L~~~ll~~il~ap~~fFd~tp~GrIlnRfs~Di~~vd~~l~~~l~~~~~~~~~~l~~ivv~~~~~~~l~lv~ip 1035 (1333)
.++++++|++++++++++|++|||++|+|+|+|||++|++.+|+.+|..+..++..++.+++.++++++.+|+++++++|
T Consensus 954 ~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~l~~~~ 1033 (1490)
T TIGR01271 954 LTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIAAIP 1033 (1490)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 1036 ILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCL 1115 (1333)
Q Consensus 1036 l~~~~~~~~~~y~~~srel~rl~~~~~spl~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~ 1115 (1333)
+++++++++++|.+++|+++|++..+++|+++|+.|+++|+.|||+|+++++|.+++.+..|.+++.++.....++|+..
T Consensus 1034 l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~ 1113 (1490)
T TIGR01271 1034 VAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQM 1113 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCcccC-
Q 000720 1116 RINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIK- 1194 (1333)
Q Consensus 1116 rl~ll~~~~~~~~~~~~~~~~~~~~~~g~~gl~l~y~l~l~~~l~~~v~~~~~le~~~~SveRI~~~~~~p~E~~~~~~- 1194 (1333)
++++++.+.+..++++.+.. ...++|.+|++++|++.+...+.++++.++++|+.+.|+|||.+|++.|+|++...+
T Consensus 1114 ~~~~i~~~~~~~~~~l~~~~--~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~~~~ 1191 (1490)
T TIGR01271 1114 RIDIIFVFFFIAVTFIAIGT--NQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGG 1191 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHH--hcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccc
Confidence 99998775544333322221 235678899999999999999999999999999999999999999998887542111
Q ss_pred -------------CCCCCCCCCCcccEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCC
Q 000720 1195 -------------NSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP 1261 (1333)
Q Consensus 1195 -------------~~~~~~~wp~~G~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep 1261 (1333)
...+++.||..|.|+|+||+|+|+++.|+||+|+||+|+||||||||||||||||||+++|+|+++
T Consensus 1192 ~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~- 1270 (1490)
T TIGR01271 1192 GGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS- 1270 (1490)
T ss_pred ccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-
Confidence 123456799999999999999999877889999999999999999999999999999999999998
Q ss_pred CCCeEEEcCEeCCCCChHHHhhcCeEecccccccccchhhhcCCCCCCCHHHHHHHHHhCCCCcccccC
Q 000720 1262 SGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVKISKLLTHKSYQC 1330 (1333)
Q Consensus 1262 ~~G~I~IDGvdI~~i~l~~LRs~isiVpQdp~LF~GTIR~NLdp~~~~sDeeI~~aL~~~~L~~~~~~~ 1330 (1333)
++|+|+|||+||+++++++||++|++|||||+||+||||+||||+++++|+|||+||++|+|++.+.+.
T Consensus 1271 ~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~l 1339 (1490)
T TIGR01271 1271 TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQF 1339 (1490)
T ss_pred CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhC
Confidence 799999999999999999999999999999999999999999999999999999999999999876654
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-160 Score=1616.66 Aligned_cols=1126 Identities=27% Similarity=0.456 Sum_probs=960.8
Q ss_pred cCCCCcccCChhHHHHHHhHHHHHHhhccCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhc-------------------
Q 000720 199 KNISTFASAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQSETANDASSLLEESLRKQK------------------- 259 (1333)
Q Consensus 199 ~~~~p~~~a~~~s~~~f~Wl~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~f~~~w~~~~------------------- 259 (1333)
..+.||++|||+.++++.|++|++.+..|..|+.+|+|+...+.++-++..++.+..+++.
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (1560)
T PTZ00243 57 YTPVPEETASWFQRYYYGWVYEYVLLASKEQLTEEDLPPPTRDVRAHECGLRLSRAVQAAMYERNAWNCMVGAEVVSTLD 136 (1560)
T ss_pred CCCCccchhhHHHHHHHHHHHHHHHHHHHhhcccccCCCCcchhhHHHHhHHHHHHHHHHHHhhcccccccccEEEeecc
Confidence 4567999999999999999999999999999999999999999998777666554332210
Q ss_pred ----------------------------------------C---------------------------------------
Q 000720 260 ----------------------------------------T--------------------------------------- 260 (1333)
Q Consensus 260 ----------------------------------------~--------------------------------------- 260 (1333)
+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (1560)
T PTZ00243 137 ASSRGVLRWVGVPQQGGYTRMMAGVEWSVPPALRTAARSDDSGASPFFNGVAHGEHLFTPEQSNMSTLEEPTDVRLYLSS 216 (1560)
T ss_pred ccccceEEeecccccCCCcceeeeeeeccCchhhhcccCCCCCCccccccccccccccCcccCCceeeeeeheeeEeecc
Confidence 0
Q ss_pred -------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHH
Q 000720 261 -------------DATSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFA 327 (1333)
Q Consensus 261 -------------~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~ 327 (1333)
+..+|+++++++||+.++..++++++.+++.+++|++++.+++|+++++. .+..|++++++++++
T Consensus 217 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~~--~~~~g~~l~~~l~~~ 294 (1560)
T PTZ00243 217 TGSVVRPGPPPTPKRLSLLRTLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNA--TWGRGLGLVLTLFLT 294 (1560)
T ss_pred cccccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc--chhHHHHHHHHHHHH
Confidence 00369999999999999999999999999999999999999999976542 344488899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC-----ChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 000720 328 KTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAGP-----SSGIIINMINVDVERIGDFFLYIHRIWLLPVQV 402 (1333)
Q Consensus 328 ~~~~~l~~~~~~~~~~~~~~rir~~l~~~iy~K~L~ls~~~~-----~~G~i~nlms~D~~~i~~~~~~~~~~w~~plqi 402 (1333)
.++.+++.++++|...+.+.++|++|.+.+|+|+++++..+. ++|+++|+|++|++++.+++.++|.+|..|+|+
T Consensus 295 ~~~~~~~~~~~~~~~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~~~~l~~~Pl~l 374 (1560)
T PTZ00243 295 QLIQSVCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQYCMYLWSSPMVL 374 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987432 789999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHH
Q 000720 403 FLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLR 482 (1333)
Q Consensus 403 ~~~l~lL~~~lG~~a~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~ 482 (1333)
++++++||..+| +++++|++++++++|++.++++++.++++++|+++|+|++.++|++++||+||+||||+.|.++|++
T Consensus 375 i~~~~lL~~~lG-~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~ 453 (1560)
T PTZ00243 375 LLSILLLSRLVG-WCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIED 453 (1560)
T ss_pred HHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 483 LREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVS 562 (1333)
Q Consensus 483 ~R~~E~~~l~~~~~~~a~~~~~~~~~p~lv~~~tF~~~~~~~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS 562 (1333)
.|++|++.+++..+..++..++.+.+|.++.+++|++|++.|++||++.+||++++|++++.|+..+|..++.+.++++|
T Consensus 454 ~R~~El~~l~~~~~~~~~~~~~~~~~p~l~~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS 533 (1560)
T PTZ00243 454 KRARELRYLRDVQLARVATSFVNNATPTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVS 533 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccCC-CCCC----CC-----CCC------------------------------------------------
Q 000720 563 LYRIQEFIKEDNQ-KKPI----TE-----PTS------------------------------------------------ 584 (1333)
Q Consensus 563 ~~RI~~fL~~~e~-~~~~----~~-----~~~------------------------------------------------ 584 (1333)
++||++||+.+|. .+.. +. ...
T Consensus 534 ~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (1560)
T PTZ00243 534 IKRISTFLECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPT 613 (1560)
T ss_pred HHHHHHHHcCccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhccccccccc
Confidence 9999999987661 1000 00 000
Q ss_pred -CCCCccEEEeeeEEEcCCccc-------------------------------cc-CCCcccccC-CeEeeCCcEEEEEC
Q 000720 585 -KASDVAIDIEAGEYAWDAREE-------------------------------NF-KKPTIKLTD-KMKIMKGSKVAVCG 630 (1333)
Q Consensus 585 -~~~~~~I~i~~~~fsw~~~~~-------------------------------~~-~~~~~~L~~-nl~i~~Ge~~~ivG 630 (1333)
......+.++|++|+|+.+.. .+ ..++++|+| ||++++|++++|+|
T Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG 693 (1560)
T PTZ00243 614 KRHPSPSVVVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLG 693 (1560)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEEC
Confidence 001124566777777653110 00 012457999 99999999999999
Q ss_pred CCCCChhHHHHHHhCCCcCCCCcEEEECCeEEEEcCCCCCCCCCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCC
Q 000720 631 SVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGD 710 (1333)
Q Consensus 631 ~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~iayv~Q~~~i~~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~ 710 (1333)
||||||||||++|+|+++|++|++ .+++++||+||+||++++||+|||.|+.+++.++|++++++|++.+|++.+|+|+
T Consensus 694 ~nGsGKSTLL~~i~G~~~~~~G~i-~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~ 772 (1560)
T PTZ00243 694 ATGSGKSTLLQSLLSQFEISEGRV-WAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGL 772 (1560)
T ss_pred CCCCcHHHHHHHHhcCCCCCCcEE-EECCeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccc
Confidence 999999999999999999999996 7889999999999999999999999998888889999999999999999999999
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEE
Q 000720 711 LSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVL 790 (1333)
Q Consensus 711 ~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~ 790 (1333)
+|.+|++|.+|||||||||+||||+|++|++||||||||+||++++++++++++.+..+++|+|++||+++.++.||+|+
T Consensus 773 ~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii 852 (1560)
T PTZ00243 773 ETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVV 852 (1560)
T ss_pred hHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEE
Confidence 99999999999999999999999999999999999999999999999999988776667999999999999999999999
Q ss_pred EEeCCeEEEccChHHHHhhcchHHHHHHHhhhhcccCCC---CCCcccccccCC--cCCcchhhhhcc--CC---CCcCC
Q 000720 791 VMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVN---PPQEDKCLSRVP--CQMSQITEERFA--RP---ISCGE 860 (1333)
Q Consensus 791 vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~~~~~~~--~~---~~~~~ 860 (1333)
+|++|++++.|+++++.++ . .+..+........+..+ ..+......... ............ .. ...+.
T Consensus 853 ~l~~G~i~~~G~~~~l~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 930 (1560)
T PTZ00243 853 ALGDGRVEFSGSSADFMRT-S-LYATLAAELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAEGGDGAALDA 930 (1560)
T ss_pred EEECCEEEEecCHHHHHhC-h-HHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999862 2 23333322111100000 000000000000 000000000000 00 00001
Q ss_pred CCCC-ccccccccCcchHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhHHHHHHhcccccccchhhHHHHHHHHHHH
Q 000720 861 FSGR-SQDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGG 939 (1333)
Q Consensus 861 ~~~~-~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~ll~~~l~~~~~~~~~~wl~~~~~~~~~~~~~~~l~vy~~l~~~ 939 (1333)
..++ .++|+++.|.++|++|+.|+++.++...+.+++++.++.+++..++++|+++|++.....+...|+++|++++++
T Consensus 931 ~~~~l~~~e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~l~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~l~~y~~~~~~ 1010 (1560)
T PTZ00243 931 AAGRLMTREEKASGSVPWSTYVAYLRFCGGLHAAGFVLATFAVTELVTVSSGVWLSMWSTRSFKLSAATYLYVYLGIVLL 1010 (1560)
T ss_pred ccchhhhHHHHhcCcccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcccHHHHHHHHHHH
Confidence 1122 466778889999999999999886655555555555667788889999999998644334456788899988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCcchhHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 000720 940 SSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSII 1019 (1333)
Q Consensus 940 ~~i~~~~~~~~~~~~~~~~s~~L~~~ll~~il~ap~~fFd~tp~GrIlnRfs~Di~~vd~~l~~~l~~~~~~~~~~l~~i 1019 (1333)
..++.+++.+.....+.++++++|++++++++++|++|||++|+|+|+|||++|++.+|+.++..+..++..++.+++.+
T Consensus 1011 ~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~l 1090 (1560)
T PTZ00243 1011 GTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSI 1090 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887788777778888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHH
Q 000720 1020 ILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDY 1099 (1333)
Q Consensus 1020 vv~~~~~~~l~lv~ipl~~~~~~~~~~y~~~srel~rl~~~~~spl~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~ 1099 (1333)
+++++.+|.++++++|+.++++++.++|.+.+|+++|.+..+++|++++++|+++|+.|||+|+.|++|.+++.+.+|.+
T Consensus 1091 i~~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~ 1170 (1560)
T PTZ00243 1091 LVTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVV 1170 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHH
Confidence 99999999888888888888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 000720 1100 SCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILV---TLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISV 1176 (1333)
Q Consensus 1100 ~~~~~~~~~~~~wl~~rl~ll~~~~~~~~~~~~~---~~~~~~~~~g~~gl~l~y~l~l~~~l~~~v~~~~~le~~~~Sv 1176 (1333)
.+..+.....++|+..+++++++++.++++++++ ....+..++|.++++++|+..+...+.++++.+.++|+.|+|+
T Consensus 1171 ~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~ 1250 (1560)
T PTZ00243 1171 YSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSV 1250 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998876544433322 2223446789999999999999999999999999999999999
Q ss_pred HHHHHhhc-CCCCCCcc-----------------------cCCCCCC---CCCCCcccEEEEEEEEEECCCCCCccccce
Q 000720 1177 ERILQFTN-IPSEAPLV-----------------------IKNSRPS---PEWPSSGKIELENLLVQYNPTLPMVLKGIT 1229 (1333)
Q Consensus 1177 eRI~~~~~-~p~E~~~~-----------------------~~~~~~~---~~wp~~G~I~f~nVsf~Y~~~~p~VLk~Is 1229 (1333)
|||.+|++ .|+|+... .++..++ +.||..|.|+|+||+|+|+++.|+||+|||
T Consensus 1251 eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~vL~~vs 1330 (1560)
T PTZ00243 1251 ERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRGVS 1330 (1560)
T ss_pred HHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCceeecce
Confidence 99999996 44442110 0011122 235667999999999999988788999999
Q ss_pred EEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeEecccccccccchhhhcCCCCCC
Q 000720 1230 CTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQH 1309 (1333)
Q Consensus 1230 ~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isiVpQdp~LF~GTIR~NLdp~~~~ 1309 (1333)
|+|+||||||||||||||||||+++|+|+|+|++|+|+|||+||+++++++||++|++|||||+||+||||+||||++++
T Consensus 1331 f~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~ 1410 (1560)
T PTZ00243 1331 FRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEA 1410 (1560)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhCCCCcccccC
Q 000720 1310 SDQEIWEVKISKLLTHKSYQC 1330 (1333)
Q Consensus 1310 sDeeI~~aL~~~~L~~~~~~~ 1330 (1333)
+|+|||+||++|||++.+.+.
T Consensus 1411 sdeeI~~Al~~a~l~~~I~~l 1431 (1560)
T PTZ00243 1411 SSAEVWAALELVGLRERVASE 1431 (1560)
T ss_pred CHHHHHHHHHHCCChHHHhhC
Confidence 999999999999999876554
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-114 Score=1080.97 Aligned_cols=1033 Identities=19% Similarity=0.217 Sum_probs=754.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhcCCC--CC--CchhHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 000720 273 VWKSLALNAAFAGVNTIASYIGPFLI---TNFVSFLSGKH--DH--SSYHYGLVL---ASVFLFAKTVESLTQRQWYFGA 342 (1333)
Q Consensus 273 ~~~~~~~~~~~~l~~~~~~~~~P~ll---~~li~~~~~~~--~~--~~~~~g~~l---~~~l~~~~~~~~l~~~~~~~~~ 342 (1333)
-+.++++..+-.+...+....+|++. .++.+.+-... .. ...++++.+ .++.+++.+ +...+|.+.+
T Consensus 23 ~~~D~~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~~~~~~~~~~~~l~~~~lg~~~~~~~~---~q~~c~~~~g 99 (1228)
T KOG0055|consen 23 DRFDYLLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTNKIASSEVSKVALYFVYLGVGVFISGF---IQVSCWMRTG 99 (1228)
T ss_pred chhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 35555555555555556666677653 34444432222 10 011223322 223333333 3446899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCChHHHHHHHHhhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 000720 343 NRIGIRVRSALTVLIYKRSMAIKFAGPSSGIIINMINVDVERIGDFF-----LYIHRIWLLPVQVFLALVILYKNLGAAP 417 (1333)
Q Consensus 343 ~~~~~rir~~l~~~iy~K~L~ls~~~~~~G~i~nlms~D~~~i~~~~-----~~~~~~w~~plqi~~~l~lL~~~lG~~a 417 (1333)
.|...|+|..+..++.+|...+.+...+ |++++-|+.|+++|.+++ .++|.+-....-++++++. +|..
T Consensus 100 eRq~~riR~~yl~~iLrQdi~~fD~~~~-g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~~-----~W~L 173 (1228)
T KOG0055|consen 100 ERQTARIRSKYLKAILRQDIGWFDTNST-GELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFYY-----GWKL 173 (1228)
T ss_pred HHHHHHHHHHHHHHHHhCccceeecccc-cceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHH
Confidence 9999999999999999999877665544 999999999999999875 3555555444444444443 4566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHHHHHH-HHHHHHH
Q 000720 418 AFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERD-SLKKYLY 496 (1333)
Q Consensus 418 ~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~~E~~-~l~~~~~ 496 (1333)
++.++.+..++......+++.+.+...+..++..+.-+++.|++.+||+|-.|+-|+.-.++..+.=+.-.+ .+|+..+
T Consensus 174 tlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi~~g~~ 253 (1228)
T KOG0055|consen 174 TLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIKKGLF 253 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777788888998888888888888899999999999999999999998877666554332223 2333333
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 000720 497 TCSAIAFL-FWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQ 575 (1333)
Q Consensus 497 ~~a~~~~~-~~~~p~lv~~~tF~~~~~~~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~ 575 (1333)
......+. ++.-......++||..++..+..++++||+++...-+....|.+..+.++.+.+|+++..+|.+-++..++
T Consensus 254 ~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~ 333 (1228)
T KOG0055|consen 254 KGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETIDRKPS 333 (1228)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhcCCCC
Confidence 32222222 22222334467888777778889999999999888888899999999999999999999999999988763
Q ss_pred CCCC--CCCCCCCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCC
Q 000720 576 KKPI--TEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISG 652 (1333)
Q Consensus 576 ~~~~--~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G 652 (1333)
.+.. +.......++.|+++|++|+||++ ++.++|++ ||+|++|+.+|||||+||||||++++|.++++|++|
T Consensus 334 i~~~~~~~~~~~~~~g~ief~nV~FsYPsR-----pdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G 408 (1228)
T KOG0055|consen 334 IDPYSKGGRVLSSIKGEIEFRNVCFSYPSR-----PDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSG 408 (1228)
T ss_pred CCcccccCCcccccccceEEEEEEecCCCC-----CcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCc
Confidence 2221 222333456789999999999998 77899999 999999999999999999999999999999999999
Q ss_pred cEEEECC-------------eEEEEcCCCCCCCCCHHHHhccCCcC-CHHHHHHHHHHcccchHHHhhcCCCccccCCCC
Q 000720 653 AAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1333)
Q Consensus 653 ~~i~~~g-------------~iayv~Q~~~i~~~Tv~enI~~g~~~-~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g 718 (1333)
++ .++| ++|.|+|+|.+|++||+|||.+|++- ..+...++.+.....+.+..+|+|.+|.+||+|
T Consensus 409 ~V-~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g 487 (1228)
T KOG0055|consen 409 EV-LIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERG 487 (1228)
T ss_pred eE-EEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCC
Confidence 97 7776 47999999999999999999999864 344455555555556678899999999999999
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEE
Q 000720 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIE 798 (1333)
Q Consensus 719 ~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~ 798 (1333)
.+|||||||||||||||.+||+||||||||||||++. +++.++.++...+|+|.|+|+|+++.+++||+|++|++|+|+
T Consensus 488 ~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~s-e~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~Iv 566 (1228)
T KOG0055|consen 488 VQLSGGQKQRIAIARALVRNPKILLLDEATSALDAES-ERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIV 566 (1228)
T ss_pred CCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHH-HHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEE
Confidence 9999999999999999999999999999999999987 556778888889999999999999999999999999999999
Q ss_pred EccChHHHHhhcchHHHHHHHhhhhcccCCC-CCCccccc-ccCC--cCCcchhhhhcc-CCCCc-CCCCCC-ccccccc
Q 000720 799 QSGKYEDLIADQNSELVRQMKAHRKSLDQVN-PPQEDKCL-SRVP--CQMSQITEERFA-RPISC-GEFSGR-SQDEDTE 871 (1333)
Q Consensus 799 ~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~--~~~~~~~~~~~~-~~~~~-~~~~~~-~~~e~~~ 871 (1333)
+.|+++||+++. +.+.++++.+........ +.+++... ...+ .+.......... ..... .+..++ .++...+
T Consensus 567 E~G~h~ELi~~~-G~Y~~lv~~Q~~~~~~~~~~~~~~~~~~~~~s~~~s~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 645 (1228)
T KOG0055|consen 567 EQGTHDELIALG-GIYSSLVRLQELEKAAEDEEEEESLKEERSRSLKSSSSSPSLSRGSNRSNLLSVKPEGEDPEEPVSE 645 (1228)
T ss_pred EecCHHHHHhcc-chHHHHHHHHhhhhhhhccccccchhhhhhhccccccccccccCCcccccccccccccccccccccc
Confidence 999999999954 888888877644322111 00000000 0000 000000000000 00000 000000 0000000
Q ss_pred cCcchHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHhhHHHHHHhc----cccc---ccchhhHHHHHHHHHHHHHHH
Q 000720 872 LGRVKWTVYSAFITLVY-KGALVPVILLCQVLFQALQMGSNYWIAWAT----DEKR---KVSREQLIGVFIFLSGGSSFF 943 (1333)
Q Consensus 872 ~g~v~~~~y~~y~~~~~-~~~~~~~~ll~~~l~~~~~~~~~~wl~~~~----~~~~---~~~~~~~l~vy~~l~~~~~i~ 943 (1333)
.. ....+++.++... .|.++++..++.++..+....-.+.+++.. ...+ ......|..+|+++++++.++
T Consensus 646 ~~--~~~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~ 723 (1228)
T KOG0055|consen 646 ED--EKVSFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGIT 723 (1228)
T ss_pred cc--ccccHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1122334443332 233333334444443333222222222211 1111 112335889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc--cCcchhHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 000720 944 ILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDS--TPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIIL 1021 (1333)
Q Consensus 944 ~~~~~~~~~~~~~~~s~~L~~~ll~~il~ap~~fFd~--tp~GrIlnRfs~Di~~vd~~l~~~l~~~~~~~~~~l~~ivv 1021 (1333)
.+++.+++.++|.+..+++|.++|+++++++++|||. +. |+|.+|+++|...+...+...+..++.++.+++..+++
T Consensus 724 ~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iii 802 (1228)
T KOG0055|consen 724 NFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIII 802 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999996 45 99999999999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHHH
Q 000720 1022 MSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSC 1101 (1333)
Q Consensus 1022 ~~~~~~~l~lv~ipl~~~~~~~~~~y~~~srel~rl~~~~~spl~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~ 1101 (1333)
.++.+|+++++++.+.|+++.....+.+......+.+............|++++++||++|+.|++|.+.|.+.++...+
T Consensus 803 af~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~ 882 (1228)
T KOG0055|consen 803 AFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRK 882 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 99999999988776666665554444444444444455555566788999999999999999999999999999998777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH-hccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 000720 1102 VTFHNCGTMEWLCLRINLLFNF---AFFLVLIILV-TLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVE 1177 (1333)
Q Consensus 1102 ~~~~~~~~~~wl~~rl~ll~~~---~~~~~~~~~~-~~~~~~~~~g~~gl~l~y~l~l~~~l~~~v~~~~~le~~~~Sve 1177 (1333)
..++... |-++...+-.++ ..+++..++. +...+..++..+-.++.-...-...+........++-+...|+.
T Consensus 883 ~~~~~~~---i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~ 959 (1228)
T KOG0055|consen 883 SSFKRGL---ISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAG 959 (1228)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHH
Confidence 6665433 333333332222 2223333322 23445566654433332222222334445566778888999999
Q ss_pred HHHHhhcCCCCCCcccCCCCCCCCCCCcccEEEEEEEEEEC--CCCCCccccceEEecCCcEEEEECCCCccHHHHHHHH
Q 000720 1178 RILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYN--PTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQAL 1255 (1333)
Q Consensus 1178 RI~~~~~~p~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~--~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL 1255 (1333)
+|+++++.+++-+...+. .....+.+|+|+|+||+|+|+ |+. +||+|+|++|++||+||+||+|||||||++++|
T Consensus 960 ~iF~i~dr~~~i~~~~~~--~~~~~~~~G~I~~~~V~F~YPsRP~~-~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LL 1036 (1228)
T KOG0055|consen 960 SIFEILDRKPTIDPDSTS--GGKLPNVKGDIEFRNVSFAYPTRPDV-PVLNNLSLSIRAGQTVALVGPSGSGKSTVISLL 1036 (1228)
T ss_pred HHHHHhcCCCCCCCCCCC--CCccccceeEEEEeeeEeeCCCCCCc-hhhcCCcEEecCCCEEEEECCCCCCHHHHHHHH
Confidence 999999876532211111 111123589999999999994 554 499999999999999999999999999999999
Q ss_pred hcccCCCCCeEEEcCEeCCCCChHHHhhcCeEecccccccccchhhhcCCC-CCCCHHHHHHHHHhCCCCcccccCC
Q 000720 1256 FRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPL-EQHSDQEIWEVKISKLLTHKSYQCE 1331 (1333)
Q Consensus 1256 ~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isiVpQdp~LF~GTIR~NLdp~-~~~sDeeI~~aL~~~~L~~~~~~~~ 1331 (1333)
.|||||++|.|.|||+||+++++++||++|++|.|||+||++||||||.++ .+.|.+||.+|++.++..+.+.+.|
T Consensus 1037 eRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP 1113 (1228)
T KOG0055|consen 1037 ERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLP 1113 (1228)
T ss_pred HHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCc
Confidence 999999999999999999999999999999999999999999999999988 4579999999999999988776655
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-104 Score=1063.35 Aligned_cols=1050 Identities=15% Similarity=0.121 Sum_probs=727.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 265 LPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANR 344 (1333)
Q Consensus 265 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~ 344 (1333)
+++...+.+++.++++.++.++..++..+.|+++..+++-+..... .....+.+++..++..++..+....+.....+
T Consensus 50 ~~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 127 (1466)
T PTZ00265 50 PFKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGEN--VNDIIFSLVLIGIFQFILSFISSFCMDVVTTK 127 (1466)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445567778888888888888888889999999986532211 11111111111111222222333334444555
Q ss_pred HHHHHHHHHHHHHHHHHhcccc---CCCChHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 000720 345 IGIRVRSALTVLIYKRSMAIKF---AGPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFA 420 (1333)
Q Consensus 345 ~~~rir~~l~~~iy~K~L~ls~---~~~~~G~i~nlms~D~~~i~~~~~-~~~~~w~~plqi~~~l~lL~~~lG~~a~l~ 420 (1333)
+..++|. .+|++.++++. ...+.|++.|.++.|++.+.+++. .+-.+...++.++.++++++. +.|..+++
T Consensus 128 ~~~~lR~----~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~-~sw~Lalv 202 (1466)
T PTZ00265 128 ILKTLKL----EFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLF-KNARLTLC 202 (1466)
T ss_pred HHHHHHH----HHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHH
Confidence 5555555 55555555442 123779999999999999888653 345555555556655555443 33345555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 421 ALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSA 500 (1333)
Q Consensus 421 gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~a~ 500 (1333)
.++++.+++.+...+.++.++..++..+..++..+.+.|.++|||+||.|+-|+.+.++.++..+.-.+...+.....+.
T Consensus 203 ~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~ 282 (1466)
T PTZ00265 203 ITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESL 282 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666666677888888888888888899999999999999999999999998888876544333332233233332
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000720 501 IAFLFWAS--PTLVSVITFGVCILLKT--------PLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFI 570 (1333)
Q Consensus 501 ~~~~~~~~--p~lv~~~tF~~~~~~~~--------~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL 570 (1333)
...+.... -..+.+++||.+.+..+ .++++.+++.+....+...++..+.+.+..+.++++|.+||.+.+
T Consensus 283 ~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii 362 (1466)
T PTZ00265 283 HIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEII 362 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22221111 12234556777766543 588898888766555555666666677899999999999999999
Q ss_pred cccCCCCCC-CCCCCCCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCc
Q 000720 571 KEDNQKKPI-TEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1333)
Q Consensus 571 ~~~e~~~~~-~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~ 648 (1333)
+.++..+.. ...... ....|+++|++|+|+.+ +..++|++ ||++++||+++|+||||||||||+++|+|+++
T Consensus 363 ~~~~~~~~~~~~~~~~-~~~~I~~~nVsf~Y~~~-----~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~ 436 (1466)
T PTZ00265 363 NRKPLVENNDDGKKLK-DIKKIQFKNVRFHYDTR-----KDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYD 436 (1466)
T ss_pred cCCCCCCCCCCCccCC-CCCcEEEEEEEEEcCCC-----CCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhcc
Confidence 876522111 111111 12369999999999865 34579999 99999999999999999999999999999999
Q ss_pred CCCCcEEEE-CC-------------eEEEEcCCCCCCCCCHHHHhccCCc------------------------------
Q 000720 649 RISGAAIKV-HG-------------KKAYVPQSSWIQTGTIRENILFGKD------------------------------ 684 (1333)
Q Consensus 649 ~~~G~~i~~-~g-------------~iayv~Q~~~i~~~Tv~enI~~g~~------------------------------ 684 (1333)
|++|++ .+ +| ++|||+|+|.+|++||+|||.+|..
T Consensus 437 p~~G~I-~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (1466)
T PTZ00265 437 PTEGDI-IINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCR 515 (1466)
T ss_pred CCCCeE-EEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhcccccccccccccccccccccc
Confidence 999997 66 32 3799999999999999999999742
Q ss_pred ----------------------------CCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHc
Q 000720 685 ----------------------------MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY 736 (1333)
Q Consensus 685 ----------------------------~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~ 736 (1333)
..++...++++.+++.+.+..+|+|.+|.+|++|.+|||||||||+||||++
T Consensus 516 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll 595 (1466)
T PTZ00265 516 AKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAII 595 (1466)
T ss_pred ccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHh
Confidence 1123344555666777788899999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCCeEEEecCchhhhhcCCEEEEEeCC-------------------
Q 000720 737 SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDAADLVLVMKDG------------------- 795 (1333)
Q Consensus 737 ~~~~illLDEP~saLD~~~~~~l~~~~~~~~~--~~~TvIlvtH~~~~l~~aD~i~vl~~G------------------- 795 (1333)
++|+|+|||||||+||+++.+.+.+. ++... +|+|+|+|||+++.++.||+|++|++|
T Consensus 596 ~~P~ILlLDEpTSaLD~~se~~i~~~-L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~ 674 (1466)
T PTZ00265 596 RNPKILILDEATSSLDNKSEYLVQKT-INNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDN 674 (1466)
T ss_pred cCCCEEEEeCcccccCHHHHHHHHHH-HHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCccccccccccccccccccc
Confidence 99999999999999999998877654 44443 489999999999999899999999986
Q ss_pred ----------------------------eEEEccChHHHHhhcchHHHHHHHhhhhcccCCC-C-CCccc---ccc---c
Q 000720 796 ----------------------------KIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVN-P-PQEDK---CLS---R 839 (1333)
Q Consensus 796 ----------------------------~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~---~~~---~ 839 (1333)
+|+++|+++|+++..++.+..++..+........ . .+... ... .
T Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 754 (1466)
T PTZ00265 675 KENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSDMKSSAYKDS 754 (1466)
T ss_pred cccccccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhcccccccccccccccccccccccccc
Confidence 5999999999997456677777655432211100 0 00000 000 0
Q ss_pred CCcC-Ccc-hhhh-hccC--C-CCcCCC--C--CCcccc-------c----cccCcchHHHHHHHHHHhccchHHHHHHH
Q 000720 840 VPCQ-MSQ-ITEE-RFAR--P-ISCGEF--S--GRSQDE-------D----TELGRVKWTVYSAFITLVYKGALVPVILL 898 (1333)
Q Consensus 840 ~~~~-~~~-~~~~-~~~~--~-~~~~~~--~--~~~~~e-------~----~~~g~v~~~~y~~y~~~~~~~~~~~~~ll 898 (1333)
.... ... .... .... . ...... . .+..++ + .......+..++.++...... +.+.++
T Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 832 (1466)
T PTZ00265 755 ERGYDPDEMNGNSKHENESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYKKD--VTIIAL 832 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccchhccccchhhhhccccccccchhHHHHHHHHHHHHHH--HHHHHH
Confidence 0000 000 0000 0000 0 000000 0 000000 0 000000122223333221111 222222
Q ss_pred HHHHHHHHHHhhHHHHHHhcccc---c--ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000720 899 CQVLFQALQMGSNYWIAWATDEK---R--KVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRA 973 (1333)
Q Consensus 899 ~~~l~~~~~~~~~~wl~~~~~~~---~--~~~~~~~l~vy~~l~~~~~i~~~~~~~~~~~~~~~~s~~L~~~ll~~il~a 973 (1333)
+.++..++....++.++.+.+.- . ......|..++++++++..++.+++.++..+.+.+...++|.++|++++++
T Consensus 833 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ll~~ 912 (1466)
T PTZ00265 833 SILVAGGLYPVFALLYAKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQ 912 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33333444444444444333211 0 111335666777778888888999999999999999999999999999999
Q ss_pred ccccccc--cCcchhHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH--
Q 000720 974 PISFFDS--TPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYIT-- 1049 (1333)
Q Consensus 974 p~~fFd~--tp~GrIlnRfs~Di~~vd~~l~~~l~~~~~~~~~~l~~ivv~~~~~~~l~lv~ipl~~~~~~~~~~y~~-- 1049 (1333)
|++|||+ +++|++++|+++|++.+...+...+..++..++.+++.++++++.+|.++++++|++++.........+
T Consensus 913 ~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~ 992 (1466)
T PTZ00265 913 EISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAIRARLT 992 (1466)
T ss_pred CHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999996 889999999999999999999999999999999999999999999999888776655443322211111
Q ss_pred HHHHHHHH-------------HhHhhchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 1050 TARELARM-------------VGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLR 1116 (1333)
Q Consensus 1050 ~srel~rl-------------~~~~~spl~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~r 1116 (1333)
..++.++. +.+..+...+.++|+++|++|||+|+.|+++.++|.+..+...+..........++...
T Consensus 993 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1072 (1466)
T PTZ00265 993 ANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGF 1072 (1466)
T ss_pred HHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122111 22335567889999999999999999999999999999998887777665555555555
Q ss_pred HHHHHHHHHHHHHHHHH-hccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCcccCC
Q 000720 1117 INLLFNFAFFLVLIILV-TLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKN 1195 (1333)
Q Consensus 1117 l~ll~~~~~~~~~~~~~-~~~~~~~~~g~~gl~l~y~l~l~~~l~~~v~~~~~le~~~~SveRI~~~~~~p~E~~~~~~~ 1195 (1333)
.+++..+..+++++++. ....+.++.|.+..++.+.+........+...+.++++...|.||+.++++.+++.+...+.
T Consensus 1073 ~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~ 1152 (1466)
T PTZ00265 1073 SQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNG 1152 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCc
Confidence 55554444443333332 33456677776555544443333345556777889999999999999999876543211111
Q ss_pred CCC-CCCCCCcccEEEEEEEEEECCC-CCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCC------------
Q 000720 1196 SRP-SPEWPSSGKIELENLLVQYNPT-LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP------------ 1261 (1333)
Q Consensus 1196 ~~~-~~~wp~~G~I~f~nVsf~Y~~~-~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep------------ 1261 (1333)
..+ +...+..|.|+|+||+|+|+.. ..+||+|+||+|+|||+|||||+||||||||+++|.|||||
T Consensus 1153 ~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~ 1232 (1466)
T PTZ00265 1153 GIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEH 1232 (1466)
T ss_pred ccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccc
Confidence 111 0112346899999999999632 23599999999999999999999999999999999999999
Q ss_pred ------------------------------------------CCCeEEEcCEeCCCCChHHHhhcCeEecccccccccch
Q 000720 1262 ------------------------------------------SGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTV 1299 (1333)
Q Consensus 1262 ------------------------------------------~~G~I~IDGvdI~~i~l~~LRs~isiVpQdp~LF~GTI 1299 (1333)
++|+|+|||+||+++++++||++|++|||||+||+|||
T Consensus 1233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTI 1312 (1466)
T PTZ00265 1233 TNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSI 1312 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccH
Confidence 69999999999999999999999999999999999999
Q ss_pred hhhcCCC-CCCCHHHHHHHHHhCCCCcccccCC
Q 000720 1300 RTNLDPL-EQHSDQEIWEVKISKLLTHKSYQCE 1331 (1333)
Q Consensus 1300 R~NLdp~-~~~sDeeI~~aL~~~~L~~~~~~~~ 1331 (1333)
||||..+ +++|||||++|++++++.+.+.+.|
T Consensus 1313 reNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP 1345 (1466)
T PTZ00265 1313 YENIKFGKEDATREDVKRACKFAAIDEFIESLP 1345 (1466)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCc
Confidence 9999987 4699999999999999998776654
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-65 Score=649.23 Aligned_cols=538 Identities=19% Similarity=0.243 Sum_probs=416.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 266 PQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRI 345 (1333)
Q Consensus 266 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~ 345 (1333)
++...+.+++.++...++.++..++..+.|+++..+++.+..++.. ... .+.++.++++..++..++.....+...+.
T Consensus 13 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (588)
T PRK11174 13 LKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIP-REA-LLPPFILLILLFVLRALLAWLRERVGFKA 90 (588)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677888889999999999999999999999999976321111 111 22334444455555666666666677788
Q ss_pred HHHHHHHHHHHHHHHHhccccCC---CChHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 000720 346 GIRVRSALTVLIYKRSMAIKFAG---PSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAA 421 (1333)
Q Consensus 346 ~~rir~~l~~~iy~K~L~ls~~~---~~~G~i~nlms~D~~~i~~~~~-~~~~~w~~plqi~~~l~lL~~~lG~~a~l~g 421 (1333)
+.++...+...+|+|.++++... .++|+++|.+++|++++.+++. .+..++...+.+++++++++. ++|..++..
T Consensus 91 ~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~l~l~~ 169 (588)
T PRK11174 91 GQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFP-INWAAGLIL 169 (588)
T ss_pred HHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 99999999999999999987542 3899999999999999998764 456666555555555544432 332333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 000720 422 LFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKL----LRLREIERDSLKKYLYT 497 (1333)
Q Consensus 422 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i----~~~R~~E~~~l~~~~~~ 497 (1333)
++++++...+...+.++.++..++.++..++..+.+.|.++|+++||.|+||+.+.+++ ++.|+.+.+..+.....
T Consensus 170 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (588)
T PRK11174 170 LGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLS 249 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555677888888889999999999999999999999999999999877766 55566665555444333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 498 CSAIAFLFWASPTLVSVITFGVCILLKTPLTS---------GAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQE 568 (1333)
Q Consensus 498 ~a~~~~~~~~~p~lv~~~tF~~~~~~~~~Lt~---------~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~ 568 (1333)
.....++.. .+.+ .++.++.+.+.| .++. ..++.++.+...+..|+..++..+..+.++++|.+||.+
T Consensus 250 ~~~~~~~~~-~~~~-~~~~~~~~~~~g-~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ 326 (588)
T PRK11174 250 SAVLEFFAS-ISIA-LVAVYFGFSYLG-ELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVT 326 (588)
T ss_pred HHHHHHHHH-HHHH-HHHHHHHHHHhc-ccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333222222 1221 122333333333 3443 344555566677889999999999999999999999999
Q ss_pred HhcccCCCCCCCCCC-CCCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCC
Q 000720 569 FIKEDNQKKPITEPT-SKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGE 646 (1333)
Q Consensus 569 fL~~~e~~~~~~~~~-~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~ 646 (1333)
+++.++..+.....+ ....+..|+++|++|.|+++ +++|+| ||++++||++||+||||||||||+++|+|+
T Consensus 327 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~~-------~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~ 399 (588)
T PRK11174 327 FLETPLAHPQQGEKELASNDPVTIEAEDLEILSPDG-------KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGF 399 (588)
T ss_pred HHcCCCcccCCCccccCCCCCceEEEEeeEEeccCC-------CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 998765221111111 11123469999999877643 468999 999999999999999999999999999999
Q ss_pred CcCCCCcEEEECC-------------eEEEEcCCCCCCCCCHHHHhccCCc-CCHHHHHHHHHHcccchHHHhhcCCCcc
Q 000720 647 IPRISGAAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLS 712 (1333)
Q Consensus 647 ~~~~~G~~i~~~g-------------~iayv~Q~~~i~~~Tv~enI~~g~~-~~~~~~~~v~~~~~l~~d~~~~~~g~~t 712 (1333)
+ |++|++ .++| +++||||+|++|++||+|||.+|.+ .++++++++++.|+++++++.+|+|++|
T Consensus 400 ~-p~~G~I-~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT 477 (588)
T PRK11174 400 L-PYQGSL-KINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDT 477 (588)
T ss_pred C-CCCcEE-EECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhccccccc
Confidence 9 899986 7777 5899999999999999999999964 7889999999999999999999999999
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEE
Q 000720 713 VVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVM 792 (1333)
Q Consensus 713 ~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl 792 (1333)
.+||+|.+||||||||++||||++++|+|+|||||||+||+++++++.+ .++...+++|+|+|||+++.++.||+|++|
T Consensus 478 ~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~-~l~~~~~~~TvIiItHrl~~i~~aD~Iivl 556 (588)
T PRK11174 478 PIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQ-ALNAASRRQTTLMVTHQLEDLAQWDQIWVM 556 (588)
T ss_pred ccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHH-HHHHHhCCCEEEEEecChHHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999998876 556667899999999999999999999999
Q ss_pred eCCeEEEccChHHHHhhcchHHHHHHHh
Q 000720 793 KDGKIEQSGKYEDLIADQNSELVRQMKA 820 (1333)
Q Consensus 793 ~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 820 (1333)
++|+|++.|+++|+++ .+..+.++...
T Consensus 557 ~~G~i~e~G~~~eL~~-~~~~y~~l~~~ 583 (588)
T PRK11174 557 QDGQIVQQGDYAELSQ-AGGLFATLLAH 583 (588)
T ss_pred eCCeEeecCCHHHHHh-cchHHHHHHHH
Confidence 9999999999999997 55566665543
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-65 Score=610.56 Aligned_cols=541 Identities=23% Similarity=0.317 Sum_probs=436.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 268 VIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSG-KHDHSS-YHYGLVLASVFLFAKTVESLTQRQWYFGANRI 345 (1333)
Q Consensus 268 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~-~~~~~~-~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~ 345 (1333)
.+.+-.|+.+..+.++.++.......-|.++.++++-+.. .+.... .+.-..+++..+...+...+-..++.+...|+
T Consensus 140 ~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~~~a~~rv 219 (716)
T KOG0058|consen 140 GLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGLLQYAGERV 219 (716)
T ss_pred HHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455678888888888999988888899999999998766 222101 12133344444444444555556677788899
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCChHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 000720 346 GIRVRSALTVLIYKRSMAIKFAGPSSGIIINMINVDVERIGDFF-LYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFS 424 (1333)
Q Consensus 346 ~~rir~~l~~~iy~K~L~ls~~~~~~G~i~nlms~D~~~i~~~~-~~~~~~w~~plqi~~~l~lL~~~lG~~a~l~gl~~ 424 (1333)
..|+|..+.+.+.++....-+.. .+|++++.++.|++-+.+.+ .++.+..-..+|...++.++.. +-|-.++..++.
T Consensus 220 ~~rlR~~lF~sil~QdiaFFD~n-ktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~-~S~~Ltlv~~i~ 297 (716)
T KOG0058|consen 220 VARLRTDLFRSLLRQDIAFFDEN-KTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFS-LSWRLTLVTLIV 297 (716)
T ss_pred HHHHHHHHHHHHHhhhhhhhccC-CccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhh-hhHHHHHHHHHH
Confidence 99999999888888887665544 69999999999999998865 4677776677788777766553 222344555556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 425 TIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQE----FLKKLLRLREIERDSLKKYLYTCSA 500 (1333)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~----f~~~i~~~R~~E~~~l~~~~~~~a~ 500 (1333)
+.+++.+..++++.+++..++..++..+-.+...|.|++||+||+|+-|+. |.+++++.++.-.+ -....++
T Consensus 298 ~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k----~a~a~~~ 373 (716)
T KOG0058|consen 298 VPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKK----EAVAYGI 373 (716)
T ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHH----HHHHhhH
Confidence 666666778888888888888888888899999999999999999999974 55555554433222 2221111
Q ss_pred HHHH--HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 000720 501 IAFL--FWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKP 578 (1333)
Q Consensus 501 ~~~~--~~~~p~lv~~~tF~~~~~~~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~ 578 (1333)
.... +...-..++++.+|.+...++.+|++...+.+.+-..+..++..+...++.++++..+.+|+.+|++.+++-+.
T Consensus 374 f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~ 453 (716)
T KOG0058|consen 374 FFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPL 453 (716)
T ss_pred hHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCC
Confidence 1111 11123456677889999999999999999999998999999999999999999999999999999998873221
Q ss_pred -CCCCCCCCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEE
Q 000720 579 -ITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK 656 (1333)
Q Consensus 579 -~~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~ 656 (1333)
-...|. ...+.|+|+|++|+||.+ ++.++|+| ||+|+|||.||+|||+|+||||+.++|+.+++|++|++ .
T Consensus 454 ~G~~~p~-~~~G~IeF~~VsFaYP~R-----p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~I-l 526 (716)
T KOG0058|consen 454 TGTLAPD-HLQGVIEFEDVSFAYPTR-----PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRI-L 526 (716)
T ss_pred CCccccc-cccceEEEEEeeeecCCC-----CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeE-E
Confidence 122232 456789999999999999 88899999 99999999999999999999999999999999999996 7
Q ss_pred ECC-------------eEEEEcCCCCCCCCCHHHHhccCCc-CCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCC
Q 000720 657 VHG-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1333)
Q Consensus 657 ~~g-------------~iayv~Q~~~i~~~Tv~enI~~g~~-~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LS 722 (1333)
++| +||+|.|+|.+|++||+|||.+|.+ .+++..+++.+.+.-++.+..+|+|.+|.+||+|.+||
T Consensus 527 lDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLS 606 (716)
T KOG0058|consen 527 LDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLS 606 (716)
T ss_pred ECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCcccccc
Confidence 776 4899999999999999999999986 34455566666667777899999999999999999999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccC
Q 000720 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGK 802 (1333)
Q Consensus 723 GGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~ 802 (1333)
|||||||||||||++||.|+||||.|||||++. +++.++.+....+++|||+|+|+++.++.||+|+|+++|++++.|+
T Consensus 607 GGQKQRIAIARALlr~P~VLILDEATSALDaeS-E~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~ 685 (716)
T KOG0058|consen 607 GGQKQRIAIARALLRNPRVLILDEATSALDAES-EYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGT 685 (716)
T ss_pred chHHHHHHHHHHHhcCCCEEEEechhhhcchhh-HHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEeccc
Confidence 999999999999999999999999999999976 6777888888888999999999999999999999999999999999
Q ss_pred hHHHHhhcchHHHHHHHhhh
Q 000720 803 YEDLIADQNSELVRQMKAHR 822 (1333)
Q Consensus 803 ~~~l~~~~~~~~~~~~~~~~ 822 (1333)
++|++++.++.+.++++.+.
T Consensus 686 h~eLl~~~~gly~~Lv~~q~ 705 (716)
T KOG0058|consen 686 HDELLSKPNGLYAKLVQRQL 705 (716)
T ss_pred HHHHhhCcccHHHHHHHHhc
Confidence 99999976677888776543
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-62 Score=634.20 Aligned_cols=534 Identities=16% Similarity=0.212 Sum_probs=430.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 267 QVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIG 346 (1333)
Q Consensus 267 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~ 346 (1333)
+..++.+++.++...+..++..++..+.|++++.+++.+-..... . . .+.+++++++..++..++.....+...+++
T Consensus 146 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~-~-~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (710)
T TIGR03796 146 WRRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGRQ-D-W-LRPLLLGMGLTALLQGVLTWLQLYYLRRLQ 222 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCh-h-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677778888888888899999999999999866433221 1 1 333444555555556666666666778889
Q ss_pred HHHHHHHHHHHHHHHhccccC---CCChHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 000720 347 IRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAAL 422 (1333)
Q Consensus 347 ~rir~~l~~~iy~K~L~ls~~---~~~~G~i~nlms~D~~~i~~~~~-~~~~~w~~plqi~~~l~lL~~~lG~~a~l~gl 422 (1333)
.++...+...+|+|.++++.. .+++|+++|.++.| +.+.++.. .+..+....+.+++.+++++..-+ +.+++.+
T Consensus 223 ~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~l~li~l 300 (710)
T TIGR03796 223 IKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDP-VLTLIGI 300 (710)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 999999999999999998653 34999999999988 67877653 344444455555555555554333 5556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 423 FSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIA 502 (1333)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~a~~~ 502 (1333)
+.+++.+.+...+.+...+..++.++..+++.+.+.|.++|+++||.+++|+.+.++.++.+.++.+...+.....+...
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (710)
T TIGR03796 301 AFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILG 380 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666777788888888899999999999999999999999999999999999999887777776555444443332
Q ss_pred HHHHHHH--HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCC
Q 000720 503 FLFWASP--TLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPIT 580 (1333)
Q Consensus 503 ~~~~~~p--~lv~~~tF~~~~~~~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~ 580 (1333)
.+..... ..+.++.++++.+.++.+|.+.++++..++..+..|+..++..+..+.+++++++||.++++.+++.+...
T Consensus 381 ~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~ 460 (710)
T TIGR03796 381 VLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEE 460 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Confidence 2222221 22335567788888899999999999999999999999999999999999999999999998765221111
Q ss_pred -------CCCCCCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCC
Q 000720 581 -------EPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISG 652 (1333)
Q Consensus 581 -------~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G 652 (1333)
..+....+..|+++|++|+|+.+ ++++|+| ||+|++||.++|+||||||||||+++|+|+++|++|
T Consensus 461 ~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~------~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G 534 (710)
T TIGR03796 461 EEAPAAGSEPSPRLSGYVELRNITFGYSPL------EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSG 534 (710)
T ss_pred ccccccccccCCCCCCeEEEEEEEEecCCC------CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 01101224579999999999864 3578999 999999999999999999999999999999999999
Q ss_pred cEEEECC-------------eEEEEcCCCCCCCCCHHHHhccCC-cCCHHHHHHHHHHcccchHHHhhcCCCccccCCCC
Q 000720 653 AAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGK-DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1333)
Q Consensus 653 ~~i~~~g-------------~iayv~Q~~~i~~~Tv~enI~~g~-~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g 718 (1333)
++ .++| +++||||+|+++++||||||.++. +.++++..++++.+++.++++.+|+|.+|.+|++|
T Consensus 535 ~I-~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G 613 (710)
T TIGR03796 535 EI-LFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGG 613 (710)
T ss_pred EE-EECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCC
Confidence 86 7765 579999999999999999999875 46778888999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEE
Q 000720 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIE 798 (1333)
Q Consensus 719 ~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~ 798 (1333)
.+||||||||++||||++++|+|+|||||||+||+++++++++.+.+ .++|+|+|||+++.++.||+|++|++|+|+
T Consensus 614 ~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~~i~~~D~Iivl~~G~i~ 690 (710)
T TIGR03796 614 ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLSTIRDCDEIIVLERGKVV 690 (710)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHHHHHhCCEEEEEeCCEEE
Confidence 99999999999999999999999999999999999999998876543 589999999999999999999999999999
Q ss_pred EccChHHHHhhcchHHHH
Q 000720 799 QSGKYEDLIADQNSELVR 816 (1333)
Q Consensus 799 ~~g~~~~l~~~~~~~~~~ 816 (1333)
+.|+++|+++ .++.+.+
T Consensus 691 ~~G~~~~Ll~-~~~~y~~ 707 (710)
T TIGR03796 691 QRGTHEELWA-VGGAYAR 707 (710)
T ss_pred EecCHHHHHH-cCCcHHH
Confidence 9999999987 4444444
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-62 Score=628.06 Aligned_cols=537 Identities=20% Similarity=0.240 Sum_probs=425.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 265 LPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANR 344 (1333)
Q Consensus 265 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~ 344 (1333)
+++..++.+++.++...++.++..++..+.|++++.+++.+-..... ..-+.+++++++..++..++.....+...+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (686)
T TIGR03797 126 LLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDADR---SLLVQIALALLAAAVGAAAFQLAQSLAVLR 202 (686)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667788888888999999999999999999999876432221 112334444445555555655555666778
Q ss_pred HHHHHHHHHHHHHHHHHhccccC---CCChHHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 000720 345 IGIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLY--IHRIWLLPVQVFLALVILYKNLGAAPAF 419 (1333)
Q Consensus 345 ~~~rir~~l~~~iy~K~L~ls~~---~~~~G~i~nlms~D~~~i~~~~~~--~~~~w~~plqi~~~l~lL~~~lG~~a~l 419 (1333)
++.++...+...+|+|.++++.. .+++|+++|.++ |++.+.+++.. +..+...++ +++++++++..-+ +.++
T Consensus 203 ~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~-~l~l 279 (686)
T TIGR03797 203 LETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIF-ALLNLGLMFYYSW-KLAL 279 (686)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-HHHH
Confidence 89999999999999999998653 348999999997 89998886532 223333333 3334444443333 5555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 420 AALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCS 499 (1333)
Q Consensus 420 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~a 499 (1333)
+.++++++..++...+.+...+..++.++..+++.+...|.++|+++||.++.|+.+.++.++.-++..+...+......
T Consensus 280 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (686)
T TIGR03797 280 VAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIEN 359 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56665666666777788888899999999999999999999999999999999998888777654444443333333333
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 000720 500 AIAFLFWASPTL--VSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKK 577 (1333)
Q Consensus 500 ~~~~~~~~~p~l--v~~~tF~~~~~~~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~ 577 (1333)
....+......+ +.++.++++...++.+|.+.++++..++..+..|+..++..+..+.+++++++|+.++++.+++.+
T Consensus 360 ~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~ 439 (686)
T TIGR03797 360 LLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVD 439 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 222222222222 234456777777889999999999999999999999999999999999999999999998765322
Q ss_pred CCCCCCCCCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEE
Q 000720 578 PITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK 656 (1333)
Q Consensus 578 ~~~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~ 656 (1333)
.... ........|+++|++|+|+++ ++++|+| ||++++||.+||+|+||||||||+++|+|+++|++|++ .
T Consensus 440 ~~~~-~~~~~~~~I~~~nvsf~Y~~~------~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I-~ 511 (686)
T TIGR03797 440 EAKT-DPGKLSGAIEVDRVTFRYRPD------GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSV-F 511 (686)
T ss_pred cCcC-CCCCCCceEEEEEEEEEcCCC------CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEE-E
Confidence 1111 111223579999999999754 3578999 99999999999999999999999999999999999996 7
Q ss_pred ECC-------------eEEEEcCCCCCCCCCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCCh
Q 000720 657 VHG-------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1333)
Q Consensus 657 ~~g-------------~iayv~Q~~~i~~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSG 723 (1333)
++| ++|||||+|++|++||+|||.++.+.+++...++++.+++.++++.+|+|.+|.+|++|.+|||
T Consensus 512 idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSG 591 (686)
T TIGR03797 512 YDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSG 591 (686)
T ss_pred ECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCH
Confidence 776 4799999999999999999999988888888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccCh
Q 000720 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKY 803 (1333)
Q Consensus 724 GQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~ 803 (1333)
|||||++||||++++|++++||||||+||+++++++.+.+. .. ++|+|+|||+++.++.||+|++|++|+|++.|++
T Consensus 592 GQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~-~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~ 668 (686)
T TIGR03797 592 GQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLE-RL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTY 668 (686)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHH-Hh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999998887643 33 6899999999999999999999999999999999
Q ss_pred HHHHhhcchHHHHHHH
Q 000720 804 EDLIADQNSELVRQMK 819 (1333)
Q Consensus 804 ~~l~~~~~~~~~~~~~ 819 (1333)
+|+++ .++.+.++..
T Consensus 669 ~~Ll~-~~~~y~~l~~ 683 (686)
T TIGR03797 669 DELMA-REGLFAQLAR 683 (686)
T ss_pred HHHHh-CCcHHHHHHH
Confidence 99987 4556665543
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-62 Score=627.95 Aligned_cols=530 Identities=22% Similarity=0.310 Sum_probs=428.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 265 LPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANR 344 (1333)
Q Consensus 265 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~ 344 (1333)
.++..++.+++.+....++.++..++.++.|++++.+++.+-.... ... .+.+++++++..++..+......+...+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~--~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (694)
T TIGR03375 137 WFWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQA--FET-LWVLAIGVALAIVFDFVLKTLRSYFLDV 213 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc--HhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555667788888888888899999999999999999987643322 111 2333444444444555555555566778
Q ss_pred HHHHHHHHHHHHHHHHHhccccC--CCChHHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 000720 345 IGIRVRSALTVLIYKRSMAIKFA--GPSSGIIINMINVDVERIGDFFLY--IHRIWLLPVQVFLALVILYKNLGAAPAFA 420 (1333)
Q Consensus 345 ~~~rir~~l~~~iy~K~L~ls~~--~~~~G~i~nlms~D~~~i~~~~~~--~~~~w~~plqi~~~l~lL~~~lG~~a~l~ 420 (1333)
.+.++...+...+|+|.++++.. .+++|++++.+ .|++.+.++... +..+...+.-+ +.+++++..-+ +.++.
T Consensus 214 ~~~~~~~~l~~~~~~~ll~l~~~~~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~-~l~li 290 (694)
T TIGR03375 214 AGKKADLILSAKLFERVLGLRMEARPASVGSFANQL-REFESVRDFFTSATLTALIDLPFAL-LFLLVIAIIGG-PLVWV 290 (694)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcccCCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHH-HHHHHHHHHHh-HHHHH
Confidence 88899999999999999988654 33899999999 799999987542 23333334333 33334443333 55666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 421 ALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSA 500 (1333)
Q Consensus 421 gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~a~ 500 (1333)
.++++++.+++...+.+..++..++.++..+++.+.+.|.++|+++||.+++|+.+.++.++..++..+...+.....+.
T Consensus 291 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (694)
T TIGR03375 291 PLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNL 370 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666777788888899999999999999999999999999999999999999999988877766665555544443
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 000720 501 IAFLFWASPT--LVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKP 578 (1333)
Q Consensus 501 ~~~~~~~~p~--lv~~~tF~~~~~~~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~ 578 (1333)
...+...... .+.+++++++.+..+.+|.+.++.++.++..+..|+..++..+..+.+++++++|+.++++.+++.+.
T Consensus 371 ~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~ 450 (694)
T TIGR03375 371 ATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPE 450 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 3322222222 23345678888888899999999999999999999999999999999999999999999987652211
Q ss_pred C-CCCCCCCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEE
Q 000720 579 I-TEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK 656 (1333)
Q Consensus 579 ~-~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~ 656 (1333)
. ...+.......|+++|++|+|+.+ ++++|+| |+++++||.++|+|+||||||||+++|+|+++|++|++ .
T Consensus 451 ~~~~~~~~~~~~~I~~~~vsf~Y~~~------~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I-~ 523 (694)
T TIGR03375 451 GTRFLHRPRLQGEIEFRNVSFAYPGQ------ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSV-L 523 (694)
T ss_pred CCCCCCCCCccceEEEEEEEEEeCCC------CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE-E
Confidence 1 111111224579999999999753 3578999 99999999999999999999999999999999999986 7
Q ss_pred ECC-------------eEEEEcCCCCCCCCCHHHHhccCCc-CCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCC
Q 000720 657 VHG-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1333)
Q Consensus 657 ~~g-------------~iayv~Q~~~i~~~Tv~enI~~g~~-~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LS 722 (1333)
++| +++||||+|++|++||+|||.++.+ .++++..++++.+++.++++.+|+|.+|.+|++|.+||
T Consensus 524 idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LS 603 (694)
T TIGR03375 524 LDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLS 603 (694)
T ss_pred ECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCC
Confidence 776 5899999999999999999999976 67888899999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccC
Q 000720 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGK 802 (1333)
Q Consensus 723 GGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~ 802 (1333)
||||||++||||++++|++++||||||+||+++++++.+. +....+++|+|+|||+++.++.||+|++|++|++++.|+
T Consensus 604 gGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~-l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~ 682 (694)
T TIGR03375 604 GGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDR-LKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGP 682 (694)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCC
Confidence 9999999999999999999999999999999998888764 555667899999999999999999999999999999999
Q ss_pred hHHHHh
Q 000720 803 YEDLIA 808 (1333)
Q Consensus 803 ~~~l~~ 808 (1333)
++|+++
T Consensus 683 ~~eLl~ 688 (694)
T TIGR03375 683 KDQVLE 688 (694)
T ss_pred HHHHHH
Confidence 999976
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-62 Score=626.76 Aligned_cols=525 Identities=20% Similarity=0.274 Sum_probs=400.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 270 IHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYG-LVLASVFLFAKTVESLTQRQWYFGANRIGIR 348 (1333)
Q Consensus 270 ~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g-~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~r 348 (1333)
++.+++.++...++.++..++..+.|+++..+++.+.+..+....... +++++..++..++..+....+.+...++..+
T Consensus 156 ~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 235 (711)
T TIGR00958 156 SGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINLR 235 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667788888888999999999999999999987643321011101 1111111222222333333344445556666
Q ss_pred HHHHHHHHHHHHHhcccc---CCCChHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 000720 349 VRSALTVLIYKRSMAIKF---AGPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALFS 424 (1333)
Q Consensus 349 ir~~l~~~iy~K~L~ls~---~~~~~G~i~nlms~D~~~i~~~~~-~~~~~w~~plqi~~~l~lL~~~lG~~a~l~gl~~ 424 (1333)
+| ..+|+|.++.+. ...++|+++|.++.|++.+.+.+. .+..+....+++++++++++. ++|..+++.++.
T Consensus 236 lr----~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~-~s~~l~l~~l~~ 310 (711)
T TIGR00958 236 IR----EDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLW-LSPRLTMVTLIN 310 (711)
T ss_pred HH----HHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHH
Confidence 66 455666665543 234889999999999999987653 566666666777766666554 332444555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 425 TIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFL 504 (1333)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~a~~~~~ 504 (1333)
+++...+...+.+..++..++..+..++..+...|.++|+++||.|++|+.+.++.++..++-.+..++.....+....+
T Consensus 311 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (711)
T TIGR00958 311 LPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWT 390 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555566777888888888888899999999999999999999999999876666554333222222222111211111
Q ss_pred HHH--HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCC
Q 000720 505 FWA--SPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEP 582 (1333)
Q Consensus 505 ~~~--~p~lv~~~tF~~~~~~~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~ 582 (1333)
... .-..+.++.++.+.+..+.++++.+++.+.++..+..|+..++..+..+.+++++.+||.++++.+++.+.....
T Consensus 391 ~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~ 470 (711)
T TIGR00958 391 TSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGTL 470 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCC
Confidence 111 112233455677777888999999999999999999999999999999999999999999999876532211111
Q ss_pred CCCCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--
Q 000720 583 TSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-- 659 (1333)
Q Consensus 583 ~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g-- 659 (1333)
...+....|+++|++|+|+++ ++.++|+| ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 471 ~~~~~~~~I~~~nVsf~Y~~~-----~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I-~idg~~ 544 (711)
T TIGR00958 471 APLNLEGLIEFQDVSFSYPNR-----PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQV-LLDGVP 544 (711)
T ss_pred CCCCCCCeEEEEEEEEECCCC-----CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEE-EECCEE
Confidence 111234569999999999865 34689999 99999999999999999999999999999999999986 7776
Q ss_pred -----------eEEEEcCCCCCCCCCHHHHhccCCc-CCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHH
Q 000720 660 -----------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (1333)
Q Consensus 660 -----------~iayv~Q~~~i~~~Tv~enI~~g~~-~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkq 727 (1333)
+++||||+|+++++||||||.+|.+ .+++...++++.+++.++++.+|+|.+|.+|++|.+|||||||
T Consensus 545 i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQ 624 (711)
T TIGR00958 545 LVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQ 624 (711)
T ss_pred HHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHH
Confidence 5799999999999999999999964 5667888899999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccChHHHH
Q 000720 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLI 807 (1333)
Q Consensus 728 Rv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~~~l~ 807 (1333)
|++||||++++|+|+|||||||+||+++.+.+.+ ....+++|+|+|||+++.++.||+|++|++|+|++.|+++|++
T Consensus 625 RlalARALl~~p~ILILDEpTSaLD~~te~~i~~---~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~ 701 (711)
T TIGR00958 625 RIAIARALVRKPRVLILDEATSALDAECEQLLQE---SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLM 701 (711)
T ss_pred HHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH---hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHH
Confidence 9999999999999999999999999999887776 2234689999999999999999999999999999999999998
Q ss_pred h
Q 000720 808 A 808 (1333)
Q Consensus 808 ~ 808 (1333)
+
T Consensus 702 ~ 702 (711)
T TIGR00958 702 E 702 (711)
T ss_pred h
Confidence 7
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-62 Score=605.72 Aligned_cols=541 Identities=23% Similarity=0.282 Sum_probs=438.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 263 TSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGA 342 (1333)
Q Consensus 263 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~ 342 (1333)
.+.++..++-+++.+.-..+..++..++..+.|++.+.+++.+-...+. ..-.+++.++.+..+++.+....-.+..
T Consensus 142 ~~~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~~---~tL~vl~ig~~~~~l~~~~l~~lr~~~~ 218 (709)
T COG2274 142 LSWFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDASR---STLTVLAIGLLLAALFEALLRLLRTYLI 218 (709)
T ss_pred hHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCch---hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677888888888888999999999999999999876543322 2245566677777777777766666777
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccC---CCChHHHHHHHHhhHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHhhhHH
Q 000720 343 NRIGIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLY-I-HRIWLLPVQVFLALVILYKNLGAAP 417 (1333)
Q Consensus 343 ~~~~~rir~~l~~~iy~K~L~ls~~---~~~~G~i~nlms~D~~~i~~~~~~-~-~~~w~~plqi~~~l~lL~~~lG~~a 417 (1333)
..++.|+...+...+|++.|+++.. .+++|++++.++ |.++|.+++.. + -.+.-.|+ .++.+.+++..-+ ..
T Consensus 219 ~~~~~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~-~~i~l~vm~~ys~-~L 295 (709)
T COG2274 219 AHLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLF-ALIFLAVMFLYSW-KL 295 (709)
T ss_pred HHHHHHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-HH
Confidence 8899999999999999999999753 459999999975 79999888642 1 12222222 2223334444444 66
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 418 AFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYT 497 (1333)
Q Consensus 418 ~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~ 497 (1333)
++.+++.+++.+.+..++.+..++..++.++...++-+...|.++||++||..+-|+.|..+.++.=.+..+.-.+....
T Consensus 296 ~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~ 375 (709)
T COG2274 296 TLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKL 375 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 77777777777888888888999999999999999999999999999999999999999888887655555543333333
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 000720 498 CSAIAFLFWASPT--LVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQ 575 (1333)
Q Consensus 498 ~a~~~~~~~~~p~--lv~~~tF~~~~~~~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~ 575 (1333)
............. -+.+++||++.++++.+|.|..+++.++...+..|+..+......+.+++++.+|+.+.++.|.+
T Consensus 376 ~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E 455 (709)
T COG2274 376 ALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPE 455 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 3222222222222 23467899999999999999999999999999999999999999999999999999999998863
Q ss_pred CCCCC-CCCCCCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCc
Q 000720 576 KKPIT-EPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGA 653 (1333)
Q Consensus 576 ~~~~~-~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~ 653 (1333)
.+... .......++.|+++|++|.|+.+ +.++|+| |++|++||.+||+|+||||||||+|+|+|+++|.+|+
T Consensus 456 ~~~~~~~~~~~~~~g~I~~~nvsf~y~~~------~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~ 529 (709)
T COG2274 456 QEGDKTLIHLPKLQGEIEFENVSFRYGPD------DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGR 529 (709)
T ss_pred cccccccccccccCceEEEEEEEEEeCCC------CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence 22211 12223346789999999999876 3479999 9999999999999999999999999999999999999
Q ss_pred EEEECC-------------eEEEEcCCCCCCCCCHHHHhccCCcCCH-HHHHHHHHHcccchHHHhhcCCCccccCCCCC
Q 000720 654 AIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKDMRQ-SFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1333)
Q Consensus 654 ~i~~~g-------------~iayv~Q~~~i~~~Tv~enI~~g~~~~~-~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~ 719 (1333)
+ .++| +++||+|++.+|++||+|||.++.+... +...++++..+..+++..+|.|.+|.+||+|.
T Consensus 530 I-~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~ 608 (709)
T COG2274 530 I-LLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGA 608 (709)
T ss_pred E-EECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCC
Confidence 6 8876 4799999999999999999999987654 44445555556788999999999999999999
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEE
Q 000720 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQ 799 (1333)
Q Consensus 720 ~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~ 799 (1333)
+||||||||++||||++++|+|+||||||||||+++.+.+.++ +....+|+|+|++||++..++.||+|+||++|+|++
T Consensus 609 ~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~-L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~ 687 (709)
T COG2274 609 NLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQN-LLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVE 687 (709)
T ss_pred CCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHH-HHHHhcCCeEEEEEccchHhhhccEEEEccCCceec
Confidence 9999999999999999999999999999999999998888775 455678899999999999999999999999999999
Q ss_pred ccChHHHHhhcchHHHHHH
Q 000720 800 SGKYEDLIADQNSELVRQM 818 (1333)
Q Consensus 800 ~g~~~~l~~~~~~~~~~~~ 818 (1333)
+|+++|+++. .+.+.++.
T Consensus 688 ~gs~~ell~~-~g~y~~l~ 705 (709)
T COG2274 688 QGSHEELLAQ-GGLYARLY 705 (709)
T ss_pred cCCHHHHHHh-cChHHHHH
Confidence 9999999984 65565554
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-60 Score=601.86 Aligned_cols=539 Identities=18% Similarity=0.216 Sum_probs=415.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 267 QVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIG 346 (1333)
Q Consensus 267 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~ 346 (1333)
+.+++.+++.++...+..++..++..+.|++++.+++.+.+... ... ...++..+++..++..+......+...+++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~--~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 93 (582)
T PRK11176 17 WPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKAD--RSV-LKWMPLVVIGLMILRGITSFISSYCISWVS 93 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777778888888889999999886654321 111 122222222233334444444444556777
Q ss_pred HHHHHHHHHHHHHHHhccccC---CCChHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 000720 347 IRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAAL 422 (1333)
Q Consensus 347 ~rir~~l~~~iy~K~L~ls~~---~~~~G~i~nlms~D~~~i~~~~~-~~~~~w~~plqi~~~l~lL~~~lG~~a~l~gl 422 (1333)
.++...+...+|+|.++++.. ..+.|+++|.++.|++++.+... .+..+...++.+++.+.+++..-+ +.++..+
T Consensus 94 ~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~l~l~~l 172 (582)
T PRK11176 94 GKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSW-QLSLILI 172 (582)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 788888889999999887653 33899999999999999988643 445566666666666666554333 5455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 423 FSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIA 502 (1333)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~a~~~ 502 (1333)
+++++...+.....+..++..++.++..++..+...|.++|+++||.+++|+.+.++.++.-++-.+...+.....+...
T Consensus 173 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (582)
T PRK11176 173 VIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISD 252 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555566777888888888899999999999999999999999999988877776643332222222222222211
Q ss_pred HHHHHHH--HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCC
Q 000720 503 FLFWASP--TLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPIT 580 (1333)
Q Consensus 503 ~~~~~~p--~lv~~~tF~~~~~~~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~ 580 (1333)
.+..... ..+.++.++.+....+.++++.+..++.++..+..|+..+...+..+.+++.+++||.++++.+++.+...
T Consensus 253 ~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~ 332 (582)
T PRK11176 253 PIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEGK 332 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCC
Confidence 1111111 22334556667667788999999999999999999999999999999999999999999998765321111
Q ss_pred CCCCCCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC
Q 000720 581 EPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG 659 (1333)
Q Consensus 581 ~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g 659 (1333)
. ........|+++|++|+|+++ +.++|+| |+++++||+++|+|+||||||||+++|+|+++|.+|++ .++|
T Consensus 333 ~-~~~~~~~~i~~~~vsf~y~~~------~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I-~i~g 404 (582)
T PRK11176 333 R-VIERAKGDIEFRNVTFTYPGK------EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEI-LLDG 404 (582)
T ss_pred c-CCCCCCCeEEEEEEEEecCCC------CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceE-EECC
Confidence 1 111223469999999999753 3579999 99999999999999999999999999999999999986 7766
Q ss_pred -------------eEEEEcCCCCCCCCCHHHHhccCCc--CCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChH
Q 000720 660 -------------KKAYVPQSSWIQTGTIRENILFGKD--MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1333)
Q Consensus 660 -------------~iayv~Q~~~i~~~Tv~enI~~g~~--~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGG 724 (1333)
.++|+||+|.++++|++|||.+|.+ .+++..+++++.+++.++++.+|+|.+|.+|++|.+||||
T Consensus 405 ~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGG 484 (582)
T PRK11176 405 HDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGG 484 (582)
T ss_pred EEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHH
Confidence 4699999999999999999999853 6788899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccChH
Q 000720 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYE 804 (1333)
Q Consensus 725 QkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~~ 804 (1333)
||||++||||++++|++++|||||||||+++++.+++.+ ....+++|+|+|||+++.++.||+|++|++|+|++.|+++
T Consensus 485 qrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l-~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~ 563 (582)
T PRK11176 485 QRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL-DELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHA 563 (582)
T ss_pred HHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHH-HHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999887654 4556789999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHH
Q 000720 805 DLIADQNSELVRQMK 819 (1333)
Q Consensus 805 ~l~~~~~~~~~~~~~ 819 (1333)
++++ .+..+.++..
T Consensus 564 ~l~~-~~~~y~~l~~ 577 (582)
T PRK11176 564 ELLA-QNGVYAQLHK 577 (582)
T ss_pred HHHh-CCChHHHHHH
Confidence 9997 4556666554
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-60 Score=599.99 Aligned_cols=538 Identities=18% Similarity=0.224 Sum_probs=423.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 267 QVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIG 346 (1333)
Q Consensus 267 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~ 346 (1333)
+.+++.+++.++...++.++..++....|+++..+++..-.... ... -+.+++.+++..++..+......+...+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 82 (571)
T TIGR02203 6 WSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRD--RSV-LWWVPLVVIGLAVLRGICSFVSTYLLSWVS 82 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc--hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788889899999999999999999999988875433221 111 122222233333334444333444566777
Q ss_pred HHHHHHHHHHHHHHHhccccC---CCChHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 000720 347 IRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAAL 422 (1333)
Q Consensus 347 ~rir~~l~~~iy~K~L~ls~~---~~~~G~i~nlms~D~~~i~~~~~-~~~~~w~~plqi~~~l~lL~~~lG~~a~l~gl 422 (1333)
.++...+...+|+|.++.+.. ..+.|++.|.++.|++++.++.. .+..++...+.+++++.+++. ++|+.+++.+
T Consensus 83 ~~~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~-~~~~l~~i~l 161 (571)
T TIGR02203 83 NKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLY-YSWQLTLIVV 161 (571)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHH
Confidence 777777778888888877643 23889999999999999998764 455555555666666655554 3325555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 423 FSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIA 502 (1333)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~a~~~ 502 (1333)
+++++.+.+...+.+..++..++..+..+++.+..+|.++|+++||.++.|+.+.++.++..++..+...+.....+...
T Consensus 162 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (571)
T TIGR02203 162 VMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISS 241 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666677888888899999999999999999999999999999999999888887766555544443333333222
Q ss_pred HHHHHHHH--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCC
Q 000720 503 FLFWASPT--LVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPIT 580 (1333)
Q Consensus 503 ~~~~~~p~--lv~~~tF~~~~~~~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~ 580 (1333)
.+...... .+.++.++.+.+..+.+|++.+++++.++..+..|+..+...+..+.+++++.+||.++++.+++.+...
T Consensus 242 ~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~ 321 (571)
T TIGR02203 242 PITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGT 321 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence 22222221 2334556777777889999999999999999999999999999999999999999999998765322111
Q ss_pred CCCCCCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC
Q 000720 581 EPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG 659 (1333)
Q Consensus 581 ~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g 659 (1333)
. +....+..|+++|++|+|+++ +.++|++ |+++++||+++|+|+||||||||+++|+|+++|.+|++ .++|
T Consensus 322 ~-~~~~~~~~i~~~~v~f~y~~~------~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I-~i~g 393 (571)
T TIGR02203 322 R-AIERARGDVEFRNVTFRYPGR------DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQI-LLDG 393 (571)
T ss_pred C-CCCCCCCeEEEEEEEEEcCCC------CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeE-EECC
Confidence 1 111223469999999999764 3578999 99999999999999999999999999999999999996 7776
Q ss_pred -------------eEEEEcCCCCCCCCCHHHHhccCC--cCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChH
Q 000720 660 -------------KKAYVPQSSWIQTGTIRENILFGK--DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1333)
Q Consensus 660 -------------~iayv~Q~~~i~~~Tv~enI~~g~--~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGG 724 (1333)
+++|+||+|++|++|++|||.++. +.++++.+++++.|++.+++..+|+|.+|.+|++|.+||||
T Consensus 394 ~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgG 473 (571)
T TIGR02203 394 HDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGG 473 (571)
T ss_pred EeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHH
Confidence 479999999999999999999985 47888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccChH
Q 000720 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYE 804 (1333)
Q Consensus 725 QkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~~ 804 (1333)
||||++||||++++|+|++||||||+||+++++++.+.+ ....+++|+|+|||+.+.++.||+|++|++|++++.|+++
T Consensus 474 qrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L-~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~ 552 (571)
T TIGR02203 474 QRQRLAIARALLKDAPILILDEATSALDNESERLVQAAL-ERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHN 552 (571)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHH-HHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHH
Confidence 999999999999999999999999999999999887654 4556789999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHH
Q 000720 805 DLIADQNSELVRQM 818 (1333)
Q Consensus 805 ~l~~~~~~~~~~~~ 818 (1333)
++++ .+..+.+..
T Consensus 553 ~l~~-~~~~~~~~~ 565 (571)
T TIGR02203 553 ELLA-RNGLYAQLH 565 (571)
T ss_pred HHHH-cCCHHHHHH
Confidence 9987 344454443
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-60 Score=612.26 Aligned_cols=531 Identities=22% Similarity=0.266 Sum_probs=412.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 268 VIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGI 347 (1333)
Q Consensus 268 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~ 347 (1333)
..++.+++.++...++.++..++..+.|+++..+++.+-.... ... -+.+++++++..++..++.....+...+.+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~--~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (708)
T TIGR01193 149 PLITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKM--MGT-LGIISIGLIIAYIIQQILSYIQIFLLNVLGQ 225 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677778788888888999999999999999986643221 111 2223333444444455554444556677888
Q ss_pred HHHHHHHHHHHHHHhccccC---CCChHHHHHHHHhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 000720 348 RVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLYI--HRIWLLPVQVFLALVILYKNLGAAPAFAAL 422 (1333)
Q Consensus 348 rir~~l~~~iy~K~L~ls~~---~~~~G~i~nlms~D~~~i~~~~~~~--~~~w~~plqi~~~l~lL~~~lG~~a~l~gl 422 (1333)
++...+...+|+|.++++.. .+++|+++|.++ |++++.++.... ..+...+. +++.+.+++.. .|+.++..+
T Consensus 226 ~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~l~~~-~~~l~li~l 302 (708)
T TIGR01193 226 RLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWI-LVIVGLFLVRQ-NMLLFLLSL 302 (708)
T ss_pred HHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-hHHHHHHHH
Confidence 88888999999999988753 348999999998 999998875422 22222333 33333333322 224444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH----HH
Q 000720 423 FSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLY----TC 498 (1333)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~----~~ 498 (1333)
+++++.+.+...+.+..++..++.++..+++.+...|.++|+++||.+++|+.+.++.++..++..+...+... ..
T Consensus 303 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (708)
T TIGR01193 303 LSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQ 382 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555667778888889999999999999999999999999999999999888876654433332222222 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC-
Q 000720 499 SAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKK- 577 (1333)
Q Consensus 499 a~~~~~~~~~p~lv~~~tF~~~~~~~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~- 577 (1333)
+...++.... .+.++++|++.+..+.+|.+.++++..++..+..|+..+...+..+.+++++.+||.++++.+++.+
T Consensus 383 ~~~~~~~~~~--~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~ 460 (708)
T TIGR01193 383 AIKAVTKLIL--NVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFIN 460 (708)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccc
Confidence 2222222222 2335677888888999999999999999999999999999999999999999999999998765221
Q ss_pred CCCCCCCCCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEE
Q 000720 578 PITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK 656 (1333)
Q Consensus 578 ~~~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~ 656 (1333)
.....+..+....|+++|++|+|+++ +++|+| |++|++||.++|+||||||||||+++|+|+++|++|++ .
T Consensus 461 ~~~~~~~~~~~~~I~~~~vsf~y~~~-------~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I-~ 532 (708)
T TIGR01193 461 KKKRTELNNLNGDIVINDVSYSYGYG-------SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEI-L 532 (708)
T ss_pred cccccCCCCCCCcEEEEEEEEEcCCC-------CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEE-E
Confidence 11111122234579999999999743 468999 99999999999999999999999999999999999996 7
Q ss_pred ECC-------------eEEEEcCCCCCCCCCHHHHhccCC--cCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCC
Q 000720 657 VHG-------------KKAYVPQSSWIQTGTIRENILFGK--DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1333)
Q Consensus 657 ~~g-------------~iayv~Q~~~i~~~Tv~enI~~g~--~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~L 721 (1333)
++| +++||||+|++|++||+|||.++. ..++++..++++.+++.++++.+|.|.+|.+|++|.+|
T Consensus 533 idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~L 612 (708)
T TIGR01193 533 LNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSI 612 (708)
T ss_pred ECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCC
Confidence 776 479999999999999999999983 45677788889999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEcc
Q 000720 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSG 801 (1333)
Q Consensus 722 SGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g 801 (1333)
|||||||++||||++++|+++|||||||+||+++.+++.+.+. .. +++|+|+|||+++.+..||+|++|++|++++.|
T Consensus 613 SgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~-~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G 690 (708)
T TIGR01193 613 SGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLL-NL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQG 690 (708)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHH-Hh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999999888877654 33 689999999999999999999999999999999
Q ss_pred ChHHHHhhcchHHHHH
Q 000720 802 KYEDLIADQNSELVRQ 817 (1333)
Q Consensus 802 ~~~~l~~~~~~~~~~~ 817 (1333)
+++++++ ..+.+.++
T Consensus 691 ~~~~L~~-~~~~y~~l 705 (708)
T TIGR01193 691 SHDELLD-RNGFYASL 705 (708)
T ss_pred CHHHHHh-cCCcHHHH
Confidence 9999987 34444443
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-59 Score=594.16 Aligned_cols=538 Identities=20% Similarity=0.250 Sum_probs=406.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 268 VIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGI 347 (1333)
Q Consensus 268 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~ 347 (1333)
...+.+++.++...++.++..++..+.|+++..+++.+....+. .......+++++++..++..+......+...+.+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (592)
T PRK10790 16 AYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNL-PLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAV 94 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677788888888889999999999999999876432221 11111222333333444445555555556677788
Q ss_pred HHHHHHHHHHHHHHhcccc---CCCChHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 000720 348 RVRSALTVLIYKRSMAIKF---AGPSSGIIINMINVDVERIGDFFLYI-HRIWLLPVQVFLALVILYKNLGAAPAFAALF 423 (1333)
Q Consensus 348 rir~~l~~~iy~K~L~ls~---~~~~~G~i~nlms~D~~~i~~~~~~~-~~~w~~plqi~~~l~lL~~~lG~~a~l~gl~ 423 (1333)
++...+...+|+|.++.+. ...+.|+++|.++.|++++.++.... ..+....+.+++++.+++ .++|+.+++.++
T Consensus 95 ~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~li~l~ 173 (592)
T PRK10790 95 GVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMF-SLDWRMALVAIM 173 (592)
T ss_pred HHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 8888888889999988764 23489999999999999998865432 233333333333333332 233233333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHHHHHHH-HHHHHHHHHH--
Q 000720 424 STIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDS-LKKYLYTCSA-- 500 (1333)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~~E~~~-l~~~~~~~a~-- 500 (1333)
++.+.+.+.....+..++..++..+..++-.+...|.++|+++||.|+.|+.+.++..+..++..+. .++.......
T Consensus 174 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (592)
T PRK10790 174 IFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLR 253 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333445556666777777777888888999999999999999999999998888765443332 2222211110
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 000720 501 -IAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPI 579 (1333)
Q Consensus 501 -~~~~~~~~p~lv~~~tF~~~~~~~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~ 579 (1333)
...++.....++.++ .+.+ ...+.++.+.++.++.++..+..|+..++.....+.++++|.+||.++++.++++...
T Consensus 254 ~~~~~~~~~~~~~~~~-~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~ 331 (592)
T PRK10790 254 PLLSLFSALILCGLLM-LFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGN 331 (592)
T ss_pred HHHHHHHHHHHHHHHH-HHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCC
Confidence 111111111111112 2223 3567799999999999999999999999999999999999999999999876532111
Q ss_pred CCCCCCCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEEC
Q 000720 580 TEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH 658 (1333)
Q Consensus 580 ~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~ 658 (1333)
... ......|+++|++|+|+++ .++|+| |+++++||+++|+|+||||||||+++|+|+++|.+|++ .++
T Consensus 332 ~~~--~~~~~~i~~~~v~f~y~~~-------~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I-~id 401 (592)
T PRK10790 332 DDR--PLQSGRIDIDNVSFAYRDD-------NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEI-RLD 401 (592)
T ss_pred Ccc--CCCCCeEEEEEEEEEeCCC-------CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceE-EEC
Confidence 111 1123469999999999743 468999 99999999999999999999999999999999999986 777
Q ss_pred C-------------eEEEEcCCCCCCCCCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHH
Q 000720 659 G-------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1333)
Q Consensus 659 g-------------~iayv~Q~~~i~~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQ 725 (1333)
| +++||||+|.+|++|++|||.++.+.++++..++++.+++.++++.+|+|.+|.+|++|.+|||||
T Consensus 402 g~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGq 481 (592)
T PRK10790 402 GRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQ 481 (592)
T ss_pred CEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHH
Confidence 6 379999999999999999999998888888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccChHH
Q 000720 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYED 805 (1333)
Q Consensus 726 kqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~~~ 805 (1333)
|||++||||++++|+|+|||||||+||+++.+++.+. ++...+++|+|+|||+++.++.||+|++|++|++++.|+++|
T Consensus 482 rQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~-l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~ 560 (592)
T PRK10790 482 KQLLALARVLVQTPQILILDEATANIDSGTEQAIQQA-LAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQ 560 (592)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHH-HHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9999999999999999999999999999998888664 455567899999999999999999999999999999999999
Q ss_pred HHhhcchHHHHHHHhh
Q 000720 806 LIADQNSELVRQMKAH 821 (1333)
Q Consensus 806 l~~~~~~~~~~~~~~~ 821 (1333)
+++ .+..+.++....
T Consensus 561 L~~-~~~~y~~l~~~~ 575 (592)
T PRK10790 561 LLA-AQGRYWQMYQLQ 575 (592)
T ss_pred HHh-CCCHHHHHHHHH
Confidence 997 456777666543
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-59 Score=590.58 Aligned_cols=541 Identities=19% Similarity=0.257 Sum_probs=410.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 266 PQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRI 345 (1333)
Q Consensus 266 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~ 345 (1333)
++.+++.+++.+....++.++..++..+.|+++..+++.+-...+. . . -..++..+++..++..+......+...++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~-~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (576)
T TIGR02204 9 LWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDSS-G-L-LNRYFAFLLVVALVLALGTAARFYLVTWL 85 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccH-H-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777788888888899999999999999999873222211 1 1 11122222222233334444455666788
Q ss_pred HHHHHHHHHHHHHHHHhccccC---CCChHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 000720 346 GIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAA 421 (1333)
Q Consensus 346 ~~rir~~l~~~iy~K~L~ls~~---~~~~G~i~nlms~D~~~i~~~~~-~~~~~w~~plqi~~~l~lL~~~lG~~a~l~g 421 (1333)
+.++...+...+|+|.++.+.. ..+.|+++|.++.|++.+.++.. .+..+....+.+++++++++..-. +.+++.
T Consensus 86 ~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~ 164 (576)
T TIGR02204 86 GERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSP-KLTSLV 164 (576)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHH
Confidence 8899999999999999987542 23889999999999999988753 344444444444444443332222 222322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 422 LFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAI 501 (1333)
Q Consensus 422 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~a~~ 501 (1333)
++.+++.+.+...+.+..++..++.++..++..+...|.++|+++||.+++|+.+.++.++..++..+...+.....+..
T Consensus 165 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (576)
T TIGR02204 165 LLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALL 244 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344557777788888889999999999999999999999999999988888776554444333322222221
Q ss_pred HHHHH--HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CCC
Q 000720 502 AFLFW--ASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQ-KKP 578 (1333)
Q Consensus 502 ~~~~~--~~p~lv~~~tF~~~~~~~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~-~~~ 578 (1333)
..+.. .....+..+.++++.+..+.+|.+.++++..++..+..|+..++..+..+.+++++++||.++++.+++ +..
T Consensus 245 ~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~ 324 (576)
T TIGR02204 245 TAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAP 324 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCC
Confidence 11111 112233445567777778899999999999999999999999999999999999999999999987552 111
Q ss_pred CCC-CCCCCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEE
Q 000720 579 ITE-PTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK 656 (1333)
Q Consensus 579 ~~~-~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~ 656 (1333)
... ....+....|+++|++|+|+.+ +.++.|+| ||+++|||+++|+|+||||||||+++|+|+++|.+|++ .
T Consensus 325 ~~~~~~~~~~~~~i~~~~v~f~y~~~-----~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I-~ 398 (576)
T TIGR02204 325 AHPKTLPVPLRGEIEFEQVNFAYPAR-----PDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRI-L 398 (576)
T ss_pred CCCccCCcCCCceEEEEEEEEECCCC-----CCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEE-E
Confidence 111 1111123469999999999864 33578999 99999999999999999999999999999999999986 7
Q ss_pred ECC-------------eEEEEcCCCCCCCCCHHHHhccCCc-CCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCC
Q 000720 657 VHG-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1333)
Q Consensus 657 ~~g-------------~iayv~Q~~~i~~~Tv~enI~~g~~-~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LS 722 (1333)
++| .++|+||+|+++++|++|||.++.+ .++++..++++.+++.++++.+|.|.+|.+|++|.+||
T Consensus 399 i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LS 478 (576)
T TIGR02204 399 LDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLS 478 (576)
T ss_pred ECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCC
Confidence 776 4799999999999999999999865 45677788899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccC
Q 000720 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGK 802 (1333)
Q Consensus 723 GGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~ 802 (1333)
||||||++||||++++|++++||||||+||+++++.+++. ++...+++|+|+|||+++.++.+|+|++|++|++++.|+
T Consensus 479 gGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~-l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~ 557 (576)
T TIGR02204 479 GGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQA-LETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGT 557 (576)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHH-HHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeec
Confidence 9999999999999999999999999999999998777654 455567899999999999999999999999999999999
Q ss_pred hHHHHhhcchHHHHHH
Q 000720 803 YEDLIADQNSELVRQM 818 (1333)
Q Consensus 803 ~~~l~~~~~~~~~~~~ 818 (1333)
++++.+ .+..+.++.
T Consensus 558 ~~~l~~-~~~~~~~l~ 572 (576)
T TIGR02204 558 HAELIA-KGGLYARLA 572 (576)
T ss_pred HHHHHH-cCChHHHHH
Confidence 999877 444555443
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-59 Score=585.93 Aligned_cols=520 Identities=20% Similarity=0.224 Sum_probs=403.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 272 AVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRS 351 (1333)
Q Consensus 272 ~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~rir~ 351 (1333)
.+++.++...++.++..++..+.|++++.+++.+-...+ ... -+.+++.+++..++..++.....+...+.+.++..
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~--~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (544)
T TIGR01842 3 KNKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGS--VPT-LLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDG 79 (544)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc--hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888888999999999999999986542221 111 23344445555555666666667777888999999
Q ss_pred HHHHHHHHHHhccccCCCChHHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 000720 352 ALTVLIYKRSMAIKFAGPSSGIIINMINVDVERIGDFFLY--IHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVM 429 (1333)
Q Consensus 352 ~l~~~iy~K~L~ls~~~~~~G~i~nlms~D~~~i~~~~~~--~~~~w~~plqi~~~l~lL~~~lG~~a~l~gl~~~~~~~ 429 (1333)
.+...+|+|.++++.. ..+...+.+++|++++.++... +..+...++.++..+ +++..-+ +.++..++++++.+
T Consensus 80 ~lr~~~~~~ll~~~~~--~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~-~l~li~l~~~~l~~ 155 (544)
T TIGR01842 80 ALNQPIFAASFSATLR--RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIYLL-VCFLLHP-WIGILALGGAVVLV 155 (544)
T ss_pred HHHHHHHHHHhcCccc--CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-HHHHHhh-HHHHHHHHHHHHHH
Confidence 9999999999988763 3456678889999999886543 333334444333322 2221111 22233333233333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 430 VSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASP 509 (1333)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~a~~~~~~~~~p 509 (1333)
.+.....+..++..++.++..+++.+.+.|.++|+++||.|++|+.+.++.++..++..+...+.....+....+.....
T Consensus 156 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (544)
T TIGR01842 156 GLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFR 235 (544)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777788889999999999999999999999999999999988877666554444333333332222222211
Q ss_pred --HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCC
Q 000720 510 --TLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKAS 587 (1333)
Q Consensus 510 --~lv~~~tF~~~~~~~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~ 587 (1333)
..+.++.++.+....+.+|++.+++++.++..+..|+..++..+..+.++++|.+||.++++.+++.+.... ....
T Consensus 236 ~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~--~~~~ 313 (544)
T TIGR01842 236 IVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPAMP--LPEP 313 (544)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCCCC--CCCC
Confidence 223345678887788899999999999999999999999999999999999999999999987653221111 1122
Q ss_pred CccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC-------
Q 000720 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (1333)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g------- 659 (1333)
+..|+++|++|+|+++ +++.++| |+++++||+++|+||||||||||+++|+|+++|.+|++ .++|
T Consensus 314 ~~~i~~~~v~~~y~~~------~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i-~~~g~~i~~~~ 386 (544)
T TIGR01842 314 EGHLSVENVTIVPPGG------KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSV-RLDGADLKQWD 386 (544)
T ss_pred CCeEEEEEEEEEcCCC------CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEehhhCC
Confidence 3469999999999753 3578999 99999999999999999999999999999999999986 6665
Q ss_pred ------eEEEEcCCCCCCCCCHHHHhccCCc-CCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHH
Q 000720 660 ------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732 (1333)
Q Consensus 660 ------~iayv~Q~~~i~~~Tv~enI~~g~~-~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LA 732 (1333)
.++|+||+|+++++|++|||.++.+ .+++...++++.+++.+.++.+|+|.+|.+|++|.+||||||||++||
T Consensus 387 ~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lA 466 (544)
T TIGR01842 387 RETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALA 466 (544)
T ss_pred HHHHhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHH
Confidence 4799999999999999999986654 667777888888889899999999999999999999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccChHHHHh
Q 000720 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 733 RAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~-~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
||++++|+++|||||||+||+++++++.+.+ ... .+++|+|++||+++.++.||+|++|++|++++.|+++++.+
T Consensus 467 Rall~~~~ililDEpts~LD~~~~~~i~~~l-~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 467 RALYGDPKLVVLDEPNSNLDEEGEQALANAI-KALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred HHHhcCCCEEEEeCCccccCHHHHHHHHHHH-HHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 9999999999999999999999988887654 444 36899999999999888899999999999999999998864
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-59 Score=590.17 Aligned_cols=534 Identities=20% Similarity=0.288 Sum_probs=400.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCchhHHHHHHHHHHHHHHHHHH--HHHHHHH--HHHHHHH
Q 000720 273 VWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKH-DHSSYHYGLVLASVFLFAKTVESL--TQRQWYF--GANRIGI 347 (1333)
Q Consensus 273 ~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~-~~~~~~~g~~l~~~l~~~~~~~~l--~~~~~~~--~~~~~~~ 347 (1333)
.|+.++++.+.+++..+..-+--+++..+++-...++ +.-..+... |++.+++..++..+ ..++|+| ...++.+
T Consensus 662 e~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~-~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~ 740 (1228)
T KOG0055|consen 662 EWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRA-WALIFLGLGIVSGITNFLQHYFFGIAGEKLTK 740 (1228)
T ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666555444455666666443222 100111112 33333322222221 2234444 4678888
Q ss_pred HHHHHHHHHHHHHHhccccCCCChHHHHHHHHhhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 000720 348 RVRSALTVLIYKRSMAIKFAGPSSGIIINMINVDVERIGDFFLY-----IHRIWLLPVQVFLALVILYKNLGAAPAFAAL 422 (1333)
Q Consensus 348 rir~~l~~~iy~K~L~ls~~~~~~G~i~nlms~D~~~i~~~~~~-----~~~~w~~plqi~~~l~lL~~~lG~~a~l~gl 422 (1333)
|+|......+.++...+-+..+.+|.+.+.+++|+..+...+.. +..+-....-++++++. ||-.++.++
T Consensus 741 R~R~~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~-----~W~lalv~l 815 (1228)
T KOG0055|consen 741 RLRSMMFRALLRQEVGWFDDPENSGALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIY-----GWRLALVVL 815 (1228)
T ss_pred HHHHHHHHHHHcCCCcccCCCccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 98877766666666555555553399999999999877655422 22222333333444333 344556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 000720 423 FSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRL-REIERDSLKKYLYTCSAI 501 (1333)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~-R~~E~~~l~~~~~~~a~~ 501 (1333)
++..++....+...+.+.+..++..++.++--++.+|++.|||+||.++-|++|.+...+. ++......|+.... .+.
T Consensus 816 a~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~~i~-gl~ 894 (1228)
T KOG0055|consen 816 ATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRGLIS-GLG 894 (1228)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 6667777777888888999999999999999999999999999999999999988776553 33333333333332 222
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC--CCC
Q 000720 502 AFLFWASPTLV--SVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDN--QKK 577 (1333)
Q Consensus 502 ~~~~~~~p~lv--~~~tF~~~~~~~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e--~~~ 577 (1333)
..+..+...++ ....||.++...+..++.++|.++..+.+-...+.+.....+.+..|+.|..+|.+.++.+. +.+
T Consensus 895 f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~ 974 (1228)
T KOG0055|consen 895 FGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDRKPTIDPD 974 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 22222222222 24567777788889999999999998888888888888888899999999999999999887 222
Q ss_pred CCCCCCCCCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEE
Q 000720 578 PITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK 656 (1333)
Q Consensus 578 ~~~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~ 656 (1333)
.......+.-.+.|+++|++|+||++ ++.++++| |+++++|+.+|+|||+||||||.+.+|.+.++|++|.+ .
T Consensus 975 ~~~~~~~~~~~G~I~~~~V~F~YPsR-----P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V-~ 1048 (1228)
T KOG0055|consen 975 STSGGKLPNVKGDIEFRNVSFAYPTR-----PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKV-K 1048 (1228)
T ss_pred CCCCCccccceeEEEEeeeEeeCCCC-----CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeE-E
Confidence 21111122345679999999999998 88999999 99999999999999999999999999999999999986 8
Q ss_pred ECC-------------eEEEEcCCCCCCCCCHHHHhccCC-cCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCC
Q 000720 657 VHG-------------KKAYVPQSSWIQTGTIRENILFGK-DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1333)
Q Consensus 657 ~~g-------------~iayv~Q~~~i~~~Tv~enI~~g~-~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LS 722 (1333)
++| ++|.|+|+|.+|++||||||.+|. ...++...++.+.....+.+..+|+|.+|.+||+|.+||
T Consensus 1049 IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLS 1128 (1228)
T KOG0055|consen 1049 IDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLS 1128 (1228)
T ss_pred ECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCC
Confidence 876 479999999999999999999993 335555555555555677899999999999999999999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccC
Q 000720 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGK 802 (1333)
Q Consensus 723 GGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~ 802 (1333)
||||||||||||+.+||+||||||.|||||.+. +++.++.++....|+|.|+|+|+++.+++||.|+|++||+|+|+|+
T Consensus 1129 GGQKQRIAIARAilRnPkILLLDEATSALDseS-ErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~Gt 1207 (1228)
T KOG0055|consen 1129 GGQKQRIAIARAILRNPKILLLDEATSALDSES-ERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQGT 1207 (1228)
T ss_pred chHHHHHHHHHHHHcCCCeeeeeccchhhhhhh-HHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEeccc
Confidence 999999999999999999999999999999987 5677888998999999999999999999999999999999999999
Q ss_pred hHHHHhhcchHHHHHHHhh
Q 000720 803 YEDLIADQNSELVRQMKAH 821 (1333)
Q Consensus 803 ~~~l~~~~~~~~~~~~~~~ 821 (1333)
+++|++ .++.+.+++..+
T Consensus 1208 H~~L~~-~~G~Y~~Lv~~q 1225 (1228)
T KOG0055|consen 1208 HDELLA-KRGIYFRLVQLQ 1225 (1228)
T ss_pred HHHHHh-CCCchHHHhhhc
Confidence 999998 777777776543
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-59 Score=584.32 Aligned_cols=524 Identities=21% Similarity=0.270 Sum_probs=399.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000720 285 GVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAI 364 (1333)
Q Consensus 285 l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~rir~~l~~~iy~K~L~l 364 (1333)
++..++..+.|++++.+++.+.+.... ... .+.+++.+++..++..++.....+...+.+.++...+...+|+|.+++
T Consensus 5 ~~~~~~~~~~p~~~~~iid~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~ 82 (569)
T PRK10789 5 IIIAMLQLIPPKVVGIIVDGVTEQHMT-TGQ-ILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQ 82 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcc-hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 444556667899999999876432211 111 223333344444444454444445556677888888888999999987
Q ss_pred ccC---CCChHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 365 KFA---GPSSGIIINMINVDVERIGDFF-LYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQE 440 (1333)
Q Consensus 365 s~~---~~~~G~i~nlms~D~~~i~~~~-~~~~~~w~~plqi~~~l~lL~~~lG~~a~l~gl~~~~~~~~~~~~~~~~~~ 440 (1333)
+.. ..++|+++|.+++|++++.... ..+..++..++..++++++++..++|..+++.++++++.+.+...+.+...
T Consensus 83 ~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~ 162 (569)
T PRK10789 83 HPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLH 162 (569)
T ss_pred CHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 642 3489999999999999998664 345566666555555554443345544555555555555556666777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Q 000720 441 RFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASP--TLVSVITFG 518 (1333)
Q Consensus 441 ~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~a~~~~~~~~~p--~lv~~~tF~ 518 (1333)
+..++..+..++..+...|.++|+++||.+++|+.+.++..+.-++..+...+.....+....+..... ..+.++.++
T Consensus 163 ~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 242 (569)
T PRK10789 163 ERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGG 242 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777788888888889999999999999999999987777665433222222222222221111111111 122344567
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccEEEeeeEE
Q 000720 519 VCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEY 598 (1333)
Q Consensus 519 ~~~~~~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~I~i~~~~f 598 (1333)
.+.+.++.+|.+.+++++.++..+..|+..++..+..+.+++++.+||.++++.+++...... +....+..|+++|++|
T Consensus 243 ~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~~-~~~~~~~~I~~~~v~~ 321 (569)
T PRK10789 243 SWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGSE-PVPEGRGELDVNIRQF 321 (569)
T ss_pred HHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCC-CCCCCCCcEEEEEEEE
Confidence 777778899999999999999999999999999999999999999999999987652111111 1112234699999999
Q ss_pred EcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC-------------eEEEE
Q 000720 599 AWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------------KKAYV 664 (1333)
Q Consensus 599 sw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g-------------~iayv 664 (1333)
+|+.+ +.+.|++ |+++++|++++|+||||||||||+++|+|+++|++|++ .++| +++|+
T Consensus 322 ~y~~~------~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i-~~~g~~~~~~~~~~~~~~i~~v 394 (569)
T PRK10789 322 TYPQT------DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDI-RFHDIPLTKLQLDSWRSRLAVV 394 (569)
T ss_pred ECCCC------CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEE-EECCEEHhhCCHHHHHhheEEE
Confidence 99753 3468999 99999999999999999999999999999999999986 6765 47999
Q ss_pred cCCCCCCCCCHHHHhccCC-cCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEE
Q 000720 665 PQSSWIQTGTIRENILFGK-DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYI 743 (1333)
Q Consensus 665 ~Q~~~i~~~Tv~enI~~g~-~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ill 743 (1333)
+|+|+++++|++|||.++. +..++..+++++.+++.+++..+|+|.+|.+|++|.+||||||||++||||++++|+++|
T Consensus 395 ~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~ill 474 (569)
T PRK10789 395 SQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILI 474 (569)
T ss_pred ccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999999985 456777888889899999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccChHHHHhhcchHHHHHHHh
Q 000720 744 FDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKA 820 (1333)
Q Consensus 744 LDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 820 (1333)
||||||+||+++.+++.+. ++...+++|+|++||+++.++.||+|++|++|++++.|+++++++ ..+.+.++...
T Consensus 475 lDEpts~LD~~~~~~i~~~-l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~-~~~~y~~l~~~ 549 (569)
T PRK10789 475 LDDALSAVDGRTEHQILHN-LRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQ-QSGWYRDMYRY 549 (569)
T ss_pred EECccccCCHHHHHHHHHH-HHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHH-cCChHHHHHHH
Confidence 9999999999999888775 445567899999999999999999999999999999999999987 45556665544
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-58 Score=583.24 Aligned_cols=533 Identities=19% Similarity=0.254 Sum_probs=405.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 269 IIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIR 348 (1333)
Q Consensus 269 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~r 348 (1333)
.++.+++.+....++.++..++..+.|+++..+++.+..... . +. ++..+++..++..+......+...++..+
T Consensus 13 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~~--~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (588)
T PRK13657 13 YLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGKGD--I---FP-LLAAWAGFGLFNIIAGVLVARHADRLAHR 86 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--H---HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777888888888999999999999999987654321 1 11 11111111222222233334456777888
Q ss_pred HHHHHHHHHHHHHhccccC---CCChHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 000720 349 VRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALFS 424 (1333)
Q Consensus 349 ir~~l~~~iy~K~L~ls~~---~~~~G~i~nlms~D~~~i~~~~~-~~~~~w~~plqi~~~l~lL~~~lG~~a~l~gl~~ 424 (1333)
+|..+...+|+|.++++.. ..+.|++++.++.|++.+.+... .+..+....+-.++.+++++. ++++.+++.+++
T Consensus 87 ~~~~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~l~~l~~ 165 (588)
T PRK13657 87 RRLAVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALF-MNWRLSLVLVVL 165 (588)
T ss_pred HHHHHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 8888999999999988642 33899999999999999876432 233332222222222222222 222333444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 000720 425 TIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRL----REIERDSLKKYLYTCSA 500 (1333)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~----R~~E~~~l~~~~~~~a~ 500 (1333)
+++...+...+.+..++.+++.++..++..+...|.++|+++||.|+.|+.+.+++.+. ++.+.+..+........
T Consensus 166 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (588)
T PRK13657 166 GIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVL 245 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566777888888888999999999999999999999999999999876666543 33333333322222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC-C
Q 000720 501 IAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKP-I 579 (1333)
Q Consensus 501 ~~~~~~~~p~lv~~~tF~~~~~~~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~-~ 579 (1333)
..+. .....+.+++++++.+..+.+|.+.+++++.++..+..|+..+...+..+.+++.+++|+.++++.+++.+. .
T Consensus 246 ~~~~--~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~ 323 (588)
T PRK13657 246 NRAA--STITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPP 323 (588)
T ss_pred HHHH--HHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCC
Confidence 2211 112234456678888888899999999999999999999999999999999999999999999987542111 1
Q ss_pred CCCCCCCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEEC
Q 000720 580 TEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH 658 (1333)
Q Consensus 580 ~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~ 658 (1333)
...+....+..|+++|++|+|+.+ +++|+| |+++++||+++|+|+||||||||+++|+|+++|.+|++ .++
T Consensus 324 ~~~~~~~~~~~I~~~~vsf~y~~~-------~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I-~i~ 395 (588)
T PRK13657 324 GAIDLGRVKGAVEFDDVSFSYDNS-------RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRI-LID 395 (588)
T ss_pred CCCCcCCCCCeEEEEEEEEEeCCC-------CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEE-EEC
Confidence 111111223469999999999743 358999 99999999999999999999999999999999999986 777
Q ss_pred C-------------eEEEEcCCCCCCCCCHHHHhccCCc-CCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChH
Q 000720 659 G-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1333)
Q Consensus 659 g-------------~iayv~Q~~~i~~~Tv~enI~~g~~-~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGG 724 (1333)
| +++|+||+|+++++|+||||.++.+ .+++...++++.+++.+.+..+|+|.+|.+|++|.+||||
T Consensus 396 g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgG 475 (588)
T PRK13657 396 GTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGG 475 (588)
T ss_pred CEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHH
Confidence 6 5799999999999999999999864 5567777888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccChH
Q 000720 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYE 804 (1333)
Q Consensus 725 QkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~~ 804 (1333)
||||++||||++++|++++||||||+||+++++.+++.+ ....+++|+|+|||+++.++.||+|++|++|++++.|+++
T Consensus 476 q~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l-~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~ 554 (588)
T PRK13657 476 ERQRLAIARALLKDPPILILDEATSALDVETEAKVKAAL-DELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFD 554 (588)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH-HHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999998887654 4455689999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHHh
Q 000720 805 DLIADQNSELVRQMKA 820 (1333)
Q Consensus 805 ~l~~~~~~~~~~~~~~ 820 (1333)
++++ ....+.++...
T Consensus 555 ~l~~-~~~~y~~l~~~ 569 (588)
T PRK13657 555 ELVA-RGGRFAALLRA 569 (588)
T ss_pred HHHH-CCChHHHHHHH
Confidence 9987 45566666553
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-58 Score=579.60 Aligned_cols=537 Identities=20% Similarity=0.247 Sum_probs=396.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 269 IIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLS-GKHDH-SSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIG 346 (1333)
Q Consensus 269 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~-~~~~~-~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~ 346 (1333)
.++.+++.+++..++.++..++..+.|.++..+++-.- ..... .... ....++++++..++..++.....+...+.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (574)
T PRK11160 10 LYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFN-YMLPAAGVRGAAIGRTAGRYGERLVSHDAT 88 (574)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888888899999999999999999998532 21100 0011 111122233333344444444555666788
Q ss_pred HHHHHHHHHHHHHHHhccccC---CCChHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 000720 347 IRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLY-IHRIWLLPVQVFLALVILYKNLGAAPAFAAL 422 (1333)
Q Consensus 347 ~rir~~l~~~iy~K~L~ls~~---~~~~G~i~nlms~D~~~i~~~~~~-~~~~w~~plqi~~~l~lL~~~lG~~a~l~gl 422 (1333)
.++...+...+|+|.++++.. ..++|++++.+++|++++.++... +..+....+.+++++++++. +.|..++..+
T Consensus 89 ~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~l~l~~~ 167 (574)
T PRK11160 89 FRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSF-FDLTLALTLG 167 (574)
T ss_pred HHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 888888899999999988653 238999999999999999987643 34444444444444443332 2212222222
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 423 FSTIFV-MVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAI 501 (1333)
Q Consensus 423 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~a~~ 501 (1333)
+++.+. ..+...+.++.++..++..+..++..+.+.|.++|+++||.|+.|+.+.+++++..++-.+...+.....+..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (574)
T PRK11160 168 GILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGLS 247 (574)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222211 2223455666677788888888888999999999999999999999888887765443333322222222222
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 000720 502 AFLFWASP--TLVSVITFGVCILLKTPLTSGAVLSALATFRI-LQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKP 578 (1333)
Q Consensus 502 ~~~~~~~p--~lv~~~tF~~~~~~~~~Lt~~~vft~lalf~~-l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~ 578 (1333)
..+..... ..+.++.++.+. ..+.++.+..++++.+..+ ...|+..++..+..+.++++|.+||.++++.+++.+.
T Consensus 248 ~~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~ 326 (574)
T PRK11160 248 QALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTF 326 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 22211111 122234455555 4667888887776655433 3468888999999999999999999999987652111
Q ss_pred CCCCCCCCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEE
Q 000720 579 ITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV 657 (1333)
Q Consensus 579 ~~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~ 657 (1333)
....+.......|+++|++|+|+++ ++++|+| |+++++||+++|+||||||||||+++|+|+++|++|++ .+
T Consensus 327 ~~~~~~~~~~~~i~~~~v~f~y~~~------~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I-~i 399 (574)
T PRK11160 327 PTTSTAAADQVSLTLNNVSFTYPDQ------PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEI-LL 399 (574)
T ss_pred CcccCCCCCCCeEEEEEEEEECCCC------CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE-EE
Confidence 1111111223579999999999753 2468999 99999999999999999999999999999999999996 77
Q ss_pred CC-------------eEEEEcCCCCCCCCCHHHHhccCCc-CCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCCh
Q 000720 658 HG-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1333)
Q Consensus 658 ~g-------------~iayv~Q~~~i~~~Tv~enI~~g~~-~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSG 723 (1333)
+| .++||||+|++|++|++|||.++.+ .+++...++++.+++.++++. |+|.+|.+|++|.+|||
T Consensus 400 ~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSg 478 (574)
T PRK11160 400 NGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSG 478 (574)
T ss_pred CCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCH
Confidence 76 3799999999999999999999865 567778889999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccCh
Q 000720 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKY 803 (1333)
Q Consensus 724 GQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~ 803 (1333)
|||||++||||++++|++++||||||+||+++++++.+. +....+++|+|++||+++.++.||+|++|++|++++.|++
T Consensus 479 GqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~-l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~ 557 (574)
T PRK11160 479 GEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILEL-LAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTH 557 (574)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCH
Confidence 999999999999999999999999999999998887764 4555678999999999999999999999999999999999
Q ss_pred HHHHhhcchHHHHHH
Q 000720 804 EDLIADQNSELVRQM 818 (1333)
Q Consensus 804 ~~l~~~~~~~~~~~~ 818 (1333)
+|+++ .++.+.++.
T Consensus 558 ~~l~~-~~g~y~~l~ 571 (574)
T PRK11160 558 QELLA-QQGRYYQLK 571 (574)
T ss_pred HHHHh-cCcHHHHHH
Confidence 99987 455555543
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-58 Score=578.21 Aligned_cols=498 Identities=17% Similarity=0.204 Sum_probs=374.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 269 IIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVL-ASVFLFAKTVESLTQRQWYFGANRIGI 347 (1333)
Q Consensus 269 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l-~~~l~~~~~~~~l~~~~~~~~~~~~~~ 347 (1333)
..+.+++.++...++.++..++..+.|++++.+++....... .. .+.+ ..++++..++..+......+...+.+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (529)
T TIGR02868 7 LLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPP--VL--YLSVAAVAVRAFGIGRAVFRYLERLVGHDAAL 82 (529)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch--hH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777788888888999999999999999986543221 11 1111 111112223333333334445566777
Q ss_pred HHHHHHHHHHHHHHhccccCC---CChHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 000720 348 RVRSALTVLIYKRSMAIKFAG---PSSGIIINMINVDVERIGDFFLY-IHRIWLLPVQVFLALVILYKNLGAAPAFAALF 423 (1333)
Q Consensus 348 rir~~l~~~iy~K~L~ls~~~---~~~G~i~nlms~D~~~i~~~~~~-~~~~w~~plqi~~~l~lL~~~lG~~a~l~gl~ 423 (1333)
++...+...+|+|.++++... .++|+++|.++.|++++.+.... +..+....+.+++++++++. +.|..++..++
T Consensus 83 ~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~l~l~~l~ 161 (529)
T TIGR02868 83 RSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIAL-LSVPAALVLAA 161 (529)
T ss_pred HHHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHH
Confidence 888888899999999887632 38999999999999999987653 33344444444444444332 22233333333
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 424 STIFVMVSNTPL-ANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIA 502 (1333)
Q Consensus 424 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~a~~~ 502 (1333)
.++++.++...+ .+..++..++..+..++..+...|.++|+++||.|++|+.+.++.++..++..+...+.....+...
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (529)
T TIGR02868 162 GLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGA 241 (529)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 323322222233 3334556667778889999999999999999999999999999988866555444444443333333
Q ss_pred HHHHHHHH--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCC
Q 000720 503 FLFWASPT--LVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPIT 580 (1333)
Q Consensus 503 ~~~~~~p~--lv~~~tF~~~~~~~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~ 580 (1333)
.+...... .+.++.++.+.+.++.++.+.+.+.+.+...+..|+..++..+..+.++++|.+||.++++.+++.+...
T Consensus 242 ~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~ 321 (529)
T TIGR02868 242 AAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGV 321 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCC
Confidence 22222222 2233456677777888999999999999999999999999999999999999999999998765211111
Q ss_pred -C--CCCCCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEE
Q 000720 581 -E--PTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK 656 (1333)
Q Consensus 581 -~--~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~ 656 (1333)
. .+.......|+++|++|+|+++ +++|+| |+++++||+++|+||+|||||||+++|+|+++|++|++ .
T Consensus 322 ~~~~~~~~~~~~~I~~~~vsf~Y~~~-------~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I-~ 393 (529)
T TIGR02868 322 VPAAGALGLGKPTLELRDLSFGYPGS-------PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEV-T 393 (529)
T ss_pred CCCCcccCCCCceEEEEEEEEecCCC-------CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE-E
Confidence 0 0011123469999999999754 358999 99999999999999999999999999999999999996 8
Q ss_pred ECC------------eEEEEcCCCCCCCCCHHHHhccCCc-CCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCCh
Q 000720 657 VHG------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1333)
Q Consensus 657 ~~g------------~iayv~Q~~~i~~~Tv~enI~~g~~-~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSG 723 (1333)
++| +++||||+|++|++||||||.+|.+ .++++.+++++.++++++++.+|+|.+|.+|++|.+|||
T Consensus 394 i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSG 473 (529)
T TIGR02868 394 LDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSG 473 (529)
T ss_pred ECCEEhhhHHHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCH
Confidence 887 7899999999999999999999864 577889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCch
Q 000720 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQL 780 (1333)
Q Consensus 724 GQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~ 780 (1333)
|||||++||||++++|+|++||||||+||+++++.+.+.+ ....+++|+|+|||++
T Consensus 474 GQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l-~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 474 GERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDL-LAALSGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHhcCCCEEEEEecCC
Confidence 9999999999999999999999999999999988887754 4556789999999984
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-58 Score=589.62 Aligned_cols=540 Identities=19% Similarity=0.223 Sum_probs=418.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 266 PQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRI 345 (1333)
Q Consensus 266 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~ 345 (1333)
++..++.+++.+....+..++..++..+.|++++.+++.+-...+. .. -+.+++++++..++..++.....+...++
T Consensus 130 ~~~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~~--~~-l~~l~~~~~~~~~~~~~~~~l~~~~~~~~ 206 (694)
T TIGR01846 130 FIPAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHRGL--ST-LSVLALAMLAVAIFEPALGGLRTYLFAHL 206 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCh--hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566777788888888888888999999999999866432211 11 23334444444455555555556667778
Q ss_pred HHHHHHHHHHHHHHHHhccccC---CCChHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 000720 346 GIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAA 421 (1333)
Q Consensus 346 ~~rir~~l~~~iy~K~L~ls~~---~~~~G~i~nlms~D~~~i~~~~~-~~~~~w~~plqi~~~l~lL~~~lG~~a~l~g 421 (1333)
+.++...+...+|+|.++++.. .+++|+++|.+ .|++.+.++.. .+..+....+.+++.+++++..-+ +.++..
T Consensus 207 ~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~l~li~ 284 (694)
T TIGR01846 207 TSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSP-TLTGVV 284 (694)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 8889999999999999988653 34899999999 69999998753 233333233333333434443222 444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 422 LFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAI 501 (1333)
Q Consensus 422 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~a~~ 501 (1333)
++++++...+...+.+..++..++.++..+++.+.+.|.++|+++||.++.|+.+.++..+.-++..+...+.....+..
T Consensus 285 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (694)
T TIGR01846 285 IGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIA 364 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555566667777788888888899999999999999999999999999888887765444444333333332222
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 000720 502 AFLFWASP--TLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPI 579 (1333)
Q Consensus 502 ~~~~~~~p--~lv~~~tF~~~~~~~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~ 579 (1333)
..+..... ..+.++.+|++.+..+.+|.|.+++...+...+..|+..+...+..+.+++++++|+.++++.+++.+..
T Consensus 365 ~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~ 444 (694)
T TIGR01846 365 GQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA 444 (694)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC
Confidence 22222111 1233456788877888999999999999999999999999999999999999999999999876532211
Q ss_pred CCCCCCCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEEC
Q 000720 580 TEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH 658 (1333)
Q Consensus 580 ~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~ 658 (1333)
...+....+..|+++|++|+|+++ .+++|++ |+++++||.++|+|+||||||||+++|+|+++|.+|++ .++
T Consensus 445 ~~~~~~~~~~~i~~~~vsf~y~~~------~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I-~id 517 (694)
T TIGR01846 445 GLAALPELRGAITFENIRFRYAPD------SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQV-LVD 517 (694)
T ss_pred CCCCCCCCCCeEEEEEEEEEcCCC------CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE-EEC
Confidence 111112224579999999999754 3468999 99999999999999999999999999999999999986 777
Q ss_pred C-------------eEEEEcCCCCCCCCCHHHHhccCCc-CCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChH
Q 000720 659 G-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1333)
Q Consensus 659 g-------------~iayv~Q~~~i~~~Tv~enI~~g~~-~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGG 724 (1333)
| +++||||+|+++++|++|||.++.+ .+++...++++.+++.+.++.+|.|.+|.+|++|.+||||
T Consensus 518 g~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgG 597 (694)
T TIGR01846 518 GVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGG 597 (694)
T ss_pred CEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHH
Confidence 6 3699999999999999999999764 5567777888888999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccChH
Q 000720 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYE 804 (1333)
Q Consensus 725 QkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~~ 804 (1333)
||||++||||++++|+++|||||||+||+++.+++.+.+ +...+++|+|++||+++.++.||+|++|++|+|++.|+++
T Consensus 598 q~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l-~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~ 676 (694)
T TIGR01846 598 QRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNM-REICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHE 676 (694)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHH-HHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHH
Confidence 999999999999999999999999999999988887654 4556789999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHH
Q 000720 805 DLIADQNSELVRQMK 819 (1333)
Q Consensus 805 ~l~~~~~~~~~~~~~ 819 (1333)
++++ .++.+.++..
T Consensus 677 ~l~~-~~~~y~~l~~ 690 (694)
T TIGR01846 677 ELLA-LQGLYARLWQ 690 (694)
T ss_pred HHHH-cCChHHHHHH
Confidence 9987 4556666554
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-57 Score=566.88 Aligned_cols=533 Identities=17% Similarity=0.274 Sum_probs=404.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 269 IIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIR 348 (1333)
Q Consensus 269 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~r 348 (1333)
.++.+++.++...++.++..++..+.|+++..+++.+.+.+. .. . +++..++..++..+......+...++..+
T Consensus 13 ~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~---~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (585)
T TIGR01192 13 YLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSD---VL-P--TLALWAGFGVFNTIAYVLVAREADRLAHG 86 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---HH-H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888888889999999999999999999987643221 11 1 11111122233333333444556778888
Q ss_pred HHHHHHHHHHHHHhccccC---CCChHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 000720 349 VRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALFS 424 (1333)
Q Consensus 349 ir~~l~~~iy~K~L~ls~~---~~~~G~i~nlms~D~~~i~~~~~-~~~~~w~~plqi~~~l~lL~~~lG~~a~l~gl~~ 424 (1333)
+|..+...+|+|.++++.. ..++|++++.++.|++.+.++.. .+..+....+.+++++++++. +.|..++..+++
T Consensus 87 ~~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~l~li~l~~ 165 (585)
T TIGR01192 87 RRATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFA-MDWRLSIVLMVL 165 (585)
T ss_pred HHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 9999999999999988753 34899999999999999987643 334444444545444333332 222334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 000720 425 TIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLRE----IERDSLKKYLYTCSA 500 (1333)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~----~E~~~l~~~~~~~a~ 500 (1333)
+++...+...+.+..++.+++..+..++..+.+.|.++|+++||.++.|+.+.+++.+.-+ .+.+..+........
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (585)
T TIGR01192 166 GILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGL 245 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555566777777888888888889999999999999999999999888777665433 222222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC-CCC
Q 000720 501 IAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQK-KPI 579 (1333)
Q Consensus 501 ~~~~~~~~p~lv~~~tF~~~~~~~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~-~~~ 579 (1333)
..++... ..+.++.++.+.+..+.++.+.+++++.++..+..|+..++..+..+.+++++++|+.++++.+++. +..
T Consensus 246 ~~~~~~~--~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~ 323 (585)
T TIGR01192 246 NRMASTI--SMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPA 323 (585)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCc
Confidence 2211111 1233456777777888999999999999999999999999999999999999999999999865421 111
Q ss_pred CCCCCCCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEEC
Q 000720 580 TEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH 658 (1333)
Q Consensus 580 ~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~ 658 (1333)
...+.......++++|++|+|+++ ++.+++ |+++++||+++|+||||||||||+++|+|+++|++|++ .++
T Consensus 324 ~~~~~~~~~~~i~~~~v~~~y~~~-------~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i-~~~ 395 (585)
T TIGR01192 324 DAPELPNVKGAVEFRHITFEFANS-------SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQI-LID 395 (585)
T ss_pred cCCCCCCCCCeEEEEEEEEECCCC-------CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEE-EEC
Confidence 111111123469999999999753 357999 99999999999999999999999999999999999986 666
Q ss_pred C-------------eEEEEcCCCCCCCCCHHHHhccCCc-CCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChH
Q 000720 659 G-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1333)
Q Consensus 659 g-------------~iayv~Q~~~i~~~Tv~enI~~g~~-~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGG 724 (1333)
| .++|+||+|+++++|++|||.++.+ .+++...++++.+++.+.+..+|+|.+|.+|++|.+||||
T Consensus 396 g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgG 475 (585)
T TIGR01192 396 GIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGG 475 (585)
T ss_pred CEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHH
Confidence 5 4799999999999999999999864 4555666777777888888899999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccChH
Q 000720 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYE 804 (1333)
Q Consensus 725 QkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~~ 804 (1333)
||||++||||++++|++++||||||+||+++++.+.+. ++...+++|+|+|||+++.++.||+|++|++|++++.|+++
T Consensus 476 q~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~-l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~ 554 (585)
T TIGR01192 476 ERQRLAIARAILKNAPILVLDEATSALDVETEARVKNA-IDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQ 554 (585)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHH-HHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999998887654 45556789999999999999899999999999999999999
Q ss_pred HHHhhcchHHHHHHHh
Q 000720 805 DLIADQNSELVRQMKA 820 (1333)
Q Consensus 805 ~l~~~~~~~~~~~~~~ 820 (1333)
++.+ .++.+.++...
T Consensus 555 ~l~~-~~~~y~~l~~~ 569 (585)
T TIGR01192 555 ELIQ-KDGRFYKLLRR 569 (585)
T ss_pred HHHH-CCChHHHHHHh
Confidence 9987 55566665543
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-57 Score=565.34 Aligned_cols=506 Identities=21% Similarity=0.250 Sum_probs=380.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 274 WKSLALNAAFAGVNTIASYIGPFLITNFVSFLS-GKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSA 352 (1333)
Q Consensus 274 ~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~-~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~rir~~ 352 (1333)
|+.++...++.++..++..+.|+++..+++.+. +... ... -+.+++.+++..++..++.....+...+++.++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (529)
T TIGR02857 2 RRALALLGLLGALGALLIIAQAWLLARVIDGLISAGEP--LAE-LLPALGALALAVLLRALLGWLGERAAARAAAAVKSQ 78 (529)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC--hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777888888999999999999999999773 3221 111 222333333444445555555556667778888888
Q ss_pred HHHHHHHHHhccccC---CCChHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 000720 353 LTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFV 428 (1333)
Q Consensus 353 l~~~iy~K~L~ls~~---~~~~G~i~nlms~D~~~i~~~~~-~~~~~w~~plqi~~~l~lL~~~lG~~a~l~gl~~~~~~ 428 (1333)
+...+|+|.++++.. ..++|+++|.+++|++++.++.. .+..+....+.+++++++++. +.|+.+++.++.+++.
T Consensus 79 lr~~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~l~~~~l~~~~l~ 157 (529)
T TIGR02857 79 LRERLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFP-ADWISGLILLLTAPLI 157 (529)
T ss_pred HHHHHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHH
Confidence 888899998887543 33899999999999999998754 355555555555544444332 2212223333322222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 429 MVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWAS 508 (1333)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~a~~~~~~~~~ 508 (1333)
..+...+.++.++..++.++..+++.+.+.|.++|+++||.|++|+.+.++.++.-++-.+...+.....+....+....
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (529)
T TIGR02857 158 PIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELF 237 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23334566777777888888999999999999999999999999998888876543322222111111112111111111
Q ss_pred HHHH--HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCC
Q 000720 509 PTLV--SVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKA 586 (1333)
Q Consensus 509 p~lv--~~~tF~~~~~~~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~ 586 (1333)
..+. .++.++.+.+..+.+|.+.+++++.+...+..|+..+...+..+.+++++++||.++++.+++.......+ ..
T Consensus 238 ~~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~~~~-~~ 316 (529)
T TIGR02857 238 ATLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKAPVT-AA 316 (529)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcCCC-CC
Confidence 1111 11234444455778999999999999999999999999999999999999999999998543211111111 11
Q ss_pred CCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC------
Q 000720 587 SDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------ 659 (1333)
Q Consensus 587 ~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g------ 659 (1333)
....|+++|++|+|+++ +++.++| |+++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 317 ~~~~i~~~~v~f~y~~~------~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I-~~~g~~i~~~ 389 (529)
T TIGR02857 317 PAPSLEFSGLSVAYPGR------RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSI-AVNGVPLADA 389 (529)
T ss_pred CCCeEEEEEEEEECCCC------CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE-EECCEehhhC
Confidence 22469999999999854 3478999 99999999999999999999999999999999999986 7765
Q ss_pred -------eEEEEcCCCCCCCCCHHHHhccCCc-CCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHH
Q 000720 660 -------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQL 731 (1333)
Q Consensus 660 -------~iayv~Q~~~i~~~Tv~enI~~g~~-~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~L 731 (1333)
+++||+|+|+++++|++|||.++.+ .+++...++++.+++.++++.+|+|.+|.+|++|.+||||||||++|
T Consensus 390 ~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~l 469 (529)
T TIGR02857 390 DADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLAL 469 (529)
T ss_pred CHHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHH
Confidence 3799999999999999999999864 56677888999999999999999999999999999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEE
Q 000720 732 ARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVM 792 (1333)
Q Consensus 732 ARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl 792 (1333)
|||++++|++++||||||+||+++.+.+.+.+ ....+++|+|+|||+++.++.||+|++|
T Consensus 470 aRal~~~~~ililDE~ts~lD~~~~~~i~~~l-~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 470 ARAFLRDAPLLLLDEPTAHLDAETEALVTEAL-RALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred HHHHhcCCCEEEEeCcccccCHHHHHHHHHHH-HHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 99999999999999999999999999887654 4556789999999999999999999986
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-57 Score=565.19 Aligned_cols=530 Identities=26% Similarity=0.363 Sum_probs=402.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 273 VWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSA 352 (1333)
Q Consensus 273 ~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~rir~~ 352 (1333)
++ .+....++.++..++....|.++..+++.+.. .. . . ...+...+++..++..++.....+...+++.++...
T Consensus 13 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~--~-~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 86 (567)
T COG1132 13 YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLA-DL--G-E-LLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVAD 86 (567)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hH--H-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66 78888888888899999999999999987651 11 1 1 111122222222233333344445555666788888
Q ss_pred HHHHHHHHHhccccC--CC-ChHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 000720 353 LTVLIYKRSMAIKFA--GP-SSGIIINMINVDVERIGDFFLYI-HRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFV 428 (1333)
Q Consensus 353 l~~~iy~K~L~ls~~--~~-~~G~i~nlms~D~~~i~~~~~~~-~~~w~~plqi~~~l~lL~~~lG~~a~l~gl~~~~~~ 428 (1333)
+...+|+|.++++.. .+ .+|++++.+++|++.+....... +.+-..++-++..+++++ .+.|..++..++..+++
T Consensus 87 lr~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~l~~~~~~~~~ 165 (567)
T COG1132 87 LRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLF-SLSWRLALILLLILPLL 165 (567)
T ss_pred HHHHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHH
Confidence 889999999988732 22 77999999999999999887654 222223333333333333 33323344444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 000720 429 MVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLF-WA 507 (1333)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~a~~~~~~-~~ 507 (1333)
......+.++.++...+..+..++..+.+.|.++|+++||.|+.|+...++.++..+...+...+.....+....+. ..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (567)
T COG1132 166 ALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLL 245 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566566788888888889999999999999999999999997766665544333332222122222221111 11
Q ss_pred -HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CCCCCCCCCC
Q 000720 508 -SPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQ-KKPITEPTSK 585 (1333)
Q Consensus 508 -~p~lv~~~tF~~~~~~~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~-~~~~~~~~~~ 585 (1333)
.-..+.++.++.+.+..+.++.+.+.+.+.++..+..|+..+...+..+.++..|.+|+.++++.++. .+.... ..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~--~~ 323 (567)
T COG1132 246 SSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDP--LK 323 (567)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCC--CC
Confidence 11223334456666667779999999999999999999999999999999999999999999998652 211111 12
Q ss_pred CCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC-----
Q 000720 586 ASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----- 659 (1333)
Q Consensus 586 ~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g----- 659 (1333)
..+..|+++|++|+|+++ +++++| ||++++||.+||+||+|||||||+++|+|+++|++|++ .++|
T Consensus 324 ~~~~~I~f~~vsf~y~~~-------~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I-~idg~dI~~ 395 (567)
T COG1132 324 DTIGSIEFENVSFSYPGK-------KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEI-LIDGIDIRD 395 (567)
T ss_pred CCCCeEEEEEEEEEcCCC-------CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeE-EECCEehhh
Confidence 234569999999999853 589999 99999999999999999999999999999999999997 7776
Q ss_pred --------eEEEEcCCCCCCCCCHHHHhccCCc-CCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHH
Q 000720 660 --------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1333)
Q Consensus 660 --------~iayv~Q~~~i~~~Tv~enI~~g~~-~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~ 730 (1333)
+++||||+|++|++||+|||.+|++ ..++...++++.+++.+.++.+|+|.+|.+|++|.+||||||||++
T Consensus 396 i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrla 475 (567)
T COG1132 396 ISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLA 475 (567)
T ss_pred cCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHH
Confidence 4799999999999999999999987 4666777788878888889999999999999999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccChHHHHhhc
Q 000720 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQ 810 (1333)
Q Consensus 731 LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~~~l~~~~ 810 (1333)
||||++++|+|++||||||+||+++.+.+.+.+ ....++||+|+|+|+++.+..||+|+||++|+|++.|+++|+++ .
T Consensus 476 iARall~~~~ILILDEaTSalD~~tE~~I~~~l-~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~-~ 553 (567)
T COG1132 476 IARALLRNPPILILDEATSALDTETEALIQDAL-KKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLA-K 553 (567)
T ss_pred HHHHHhcCCCEEEEeccccccCHHhHHHHHHHH-HHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHH-c
Confidence 999999999999999999999999988877654 45557899999999999999999999999999999999999998 4
Q ss_pred chHHHHHHHhh
Q 000720 811 NSELVRQMKAH 821 (1333)
Q Consensus 811 ~~~~~~~~~~~ 821 (1333)
++.+.++...+
T Consensus 554 ~g~y~~l~~~~ 564 (567)
T COG1132 554 GGLYARLYQAQ 564 (567)
T ss_pred CCHHHHHHHHh
Confidence 66777766543
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-58 Score=549.13 Aligned_cols=428 Identities=21% Similarity=0.289 Sum_probs=369.2
Q ss_pred HHHHHHHHHHhhHHHHHHhcc-----cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000720 899 CQVLFQALQMGSNYWIAWATD-----EKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRA 973 (1333)
Q Consensus 899 ~~~l~~~~~~~~~~wl~~~~~-----~~~~~~~~~~l~vy~~l~~~~~i~~~~~~~~~~~~~~~~s~~L~~~ll~~il~a 973 (1333)
+.++.....+..++.+...+| ++..........+..++.++++++.++|.+++.+.+.+...++|.++|++++|+
T Consensus 155 ~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~~~a~~rv~~rlR~~lF~sil~Q 234 (716)
T KOG0058|consen 155 LLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGLLQYAGERVVARLRTDLFRSLLRQ 234 (716)
T ss_pred HHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444556666665543332 111122334456677778889999999999999999999999999999999999
Q ss_pred ccccccccCcchhHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 974 PISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARE 1053 (1333)
Q Consensus 974 p~~fFd~tp~GrIlnRfs~Di~~vd~~l~~~l~~~~~~~~~~l~~ivv~~~~~~~l~lv~ipl~~~~~~~~~~y~~~sre 1053 (1333)
.++|||.+.+|+|++|+++|.+.+.+.++..+...+.+.++.++.+++|++.+|++.++.+..+|+...+.++|.+..|+
T Consensus 235 diaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltlv~~i~~P~v~~~~~~yG~~~rk 314 (716)
T KOG0058|consen 235 DIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTLVTLIVVPIVALVAKIYGKYLRK 314 (716)
T ss_pred hhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHhhchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 000720 1054 LARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIIL- 1132 (1333)
Q Consensus 1054 l~rl~~~~~spl~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~ll~~~~~~~~~~~~- 1132 (1333)
+.+..+++.+...+...|.+++++|||+|+.|++..++|.+.+++..+...+...+...+....++.+......++..+
T Consensus 315 lS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f~~~~~~~~~~~~~siL~~Gg 394 (716)
T KOG0058|consen 315 LSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYGIFFGSTNLLGNLAVLSILFYGG 394 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHhHhHHHHHHhHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999988877766666665555566666666555555443
Q ss_pred HhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCcccCCCCCCCCCCCcccEEEEE
Q 000720 1133 VTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELEN 1212 (1333)
Q Consensus 1133 ~~~~~~~~~~g~~gl~l~y~l~l~~~l~~~v~~~~~le~~~~SveRI~~~~~~p~E~~~~~~~~~~~~~wp~~G~I~f~n 1212 (1333)
.+...+.+++|..--++.|...+...+..+-..++++-+.+.|.||++||+|.+|.-+.. + ...|. ..+|.|+|+|
T Consensus 395 ~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~--G-~~~p~-~~~G~IeF~~ 470 (716)
T KOG0058|consen 395 HLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLT--G-TLAPD-HLQGVIEFED 470 (716)
T ss_pred chhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCC--C-ccccc-cccceEEEEE
Confidence 334567789999999999999999999999999999999999999999999977654432 1 11222 4689999999
Q ss_pred EEEEEC--CCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeEecc
Q 000720 1213 LLVQYN--PTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQ 1290 (1333)
Q Consensus 1213 Vsf~Y~--~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isiVpQ 1290 (1333)
|+|+|+ |+. +||||+||+|+|||+||+||||||||||++++|.|||||++|+|++||+||++++.+.||++||+|.|
T Consensus 471 VsFaYP~Rp~~-~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~Q 549 (716)
T KOG0058|consen 471 VSFAYPTRPDV-PVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQ 549 (716)
T ss_pred eeeecCCCCCc-hhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeec
Confidence 999995 444 49999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccchhhhcCCC-CCCCHHHHHHHHHhCCCCcccccCC
Q 000720 1291 DPMLFQGTVRTNLDPL-EQHSDQEIWEVKISKLLTHKSYQCE 1331 (1333)
Q Consensus 1291 dp~LF~GTIR~NLdp~-~~~sDeeI~~aL~~~~L~~~~~~~~ 1331 (1333)
||+||+|||||||.++ .+.|||||.+|.++++-.+.+...|
T Consensus 550 EPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p 591 (716)
T KOG0058|consen 550 EPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFP 591 (716)
T ss_pred cceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCc
Confidence 9999999999999876 4689999999999999887766554
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-56 Score=521.65 Aligned_cols=523 Identities=22% Similarity=0.288 Sum_probs=399.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 279 LNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIY 358 (1333)
Q Consensus 279 ~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~rir~~l~~~iy 358 (1333)
...++..+..++...+-+++-..++-+-..+.. .. -+.++++++++.++.++..-.-....+|.+.++|..+...++
T Consensus 4 i~~ll~~l~~i~~i~qa~llA~~l~~l~~~~~~--~~-l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l 80 (559)
T COG4988 4 ISALLAVLSGIAIIAQAALLADILTKLIEGQLF--QS-LLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVL 80 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccH--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666777766665533222211 11 233444455555555555444445567889999999999999
Q ss_pred HHHhccccCC---CChHHHHHHHHhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 000720 359 KRSMAIKFAG---PSSGIIINMINVDVERIGDFF----LYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVS 431 (1333)
Q Consensus 359 ~K~L~ls~~~---~~~G~i~nlms~D~~~i~~~~----~~~~~~w~~plqi~~~l~lL~~~lG~~a~l~gl~~~~~~~~~ 431 (1333)
+|..+++... .++|++.+++..-++.+..++ +.+...-..|+-+.++++...+.-| ...+..+..+.+.
T Consensus 81 ~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aa-lIllit~PlIPlf--- 156 (559)
T COG4988 81 DKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAA-LILLITAPLIPLF--- 156 (559)
T ss_pred HHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHH---
Confidence 9999887532 288999999999999887754 3444555678888888877776555 4333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 432 NTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKL----LRLREIERDSLKKYLYTCSAIAFLFWA 507 (1333)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i----~~~R~~E~~~l~~~~~~~a~~~~~~~~ 507 (1333)
.+.+++..++..++.++.-..=-...-+-|+|+-++|.|+-.+...++| ++.|+.-|+.+|-.....++.-++...
T Consensus 157 Milvg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~l 236 (559)
T COG4988 157 MILVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYL 236 (559)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666665555667778999999999999876555555 568999999888766665555444333
Q ss_pred HHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC-CCCCC-CCC
Q 000720 508 SPTLVSVITFGVCILLK-TPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQK-KPITE-PTS 584 (1333)
Q Consensus 508 ~p~lv~~~tF~~~~~~~-~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~-~~~~~-~~~ 584 (1333)
+-.+ ++.+...-+.+ ++++-...|.+|-+---.-.|++.+...+..-.++..+.+.+..|++.|++. +..+. ...
T Consensus 237 siAl--vAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~ 314 (559)
T COG4988 237 SIAL--VAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVA 314 (559)
T ss_pred HHHH--HHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccc
Confidence 2222 22333444556 6899999999888877788999999999999999999999999999988732 22111 112
Q ss_pred CCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----
Q 000720 585 KASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---- 659 (1333)
Q Consensus 585 ~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---- 659 (1333)
......+..+|.+|.|++. ++.+++ |+++++|++++|+|+||||||||+++|+|+.+|++|++ .++|
T Consensus 315 ~~~~~ei~~~~l~~~y~~g-------~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I-~vng~~l~ 386 (559)
T COG4988 315 NEPPIEISLENLSFRYPDG-------KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEI-RVNGIDLR 386 (559)
T ss_pred cCCCceeeecceEEecCCC-------CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceE-EECCcccc
Confidence 2223345566999999865 388999 99999999999999999999999999999999999996 7775
Q ss_pred ---------eEEEEcCCCCCCCCCHHHHhccCCc-CCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHH
Q 000720 660 ---------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1333)
Q Consensus 660 ---------~iayv~Q~~~i~~~Tv~enI~~g~~-~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv 729 (1333)
+++||+|+|.++.+|+||||.++++ -.++...++++..++.+.++. |+|.+|.+||+|.+|||||+||+
T Consensus 387 ~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRl 465 (559)
T COG4988 387 DLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRL 465 (559)
T ss_pred ccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHH
Confidence 4899999999999999999999987 456778889999999888888 99999999999999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccChHHHHhh
Q 000720 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIAD 809 (1333)
Q Consensus 730 ~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~~~l~~~ 809 (1333)
+||||+++++++|||||||++||+++++.+. +.+..+.+++|+|++||+++.+..+|+|++|++|++++.|+++++.+
T Consensus 466 aLARAll~~~~l~llDEpTA~LD~etE~~i~-~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~- 543 (559)
T COG4988 466 ALARALLSPASLLLLDEPTAHLDAETEQIIL-QALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSE- 543 (559)
T ss_pred HHHHHhcCCCCEEEecCCccCCCHhHHHHHH-HHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhh-
Confidence 9999999999999999999999999976665 45667778899999999999999999999999999999999999987
Q ss_pred cchHHHHHHHhh
Q 000720 810 QNSELVRQMKAH 821 (1333)
Q Consensus 810 ~~~~~~~~~~~~ 821 (1333)
+++-+.+++.++
T Consensus 544 ~~~~y~~l~~~q 555 (559)
T COG4988 544 KQGLYANLLKQQ 555 (559)
T ss_pred cCcHHHHHHHHH
Confidence 556666666543
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-56 Score=596.94 Aligned_cols=536 Identities=18% Similarity=0.189 Sum_probs=380.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 271 HAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVR 350 (1333)
Q Consensus 271 ~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~rir 350 (1333)
+.+++.++++.++.++..++..+.|+++..+++-+-+.... ... +..+++.+++..++..++.....|...+++.++-
T Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~-~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~ 898 (1466)
T PTZ00265 821 FSYKKDVTIIALSILVAGGLYPVFALLYAKYVSTLFDFANL-EAN-SNKYSLYILVIAIAMFISETLKNYYNNVIGEKVE 898 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555677888888888888889999999998744222110 111 2222333333333333333333344556666666
Q ss_pred HHHHHHHHHHHhccccC-----CCChHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 000720 351 SALTVLIYKRSMAIKFA-----GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALFS 424 (1333)
Q Consensus 351 ~~l~~~iy~K~L~ls~~-----~~~~G~i~nlms~D~~~i~~~~~-~~~~~w~~plqi~~~l~lL~~~lG~~a~l~gl~~ 424 (1333)
..+...+|+|.++.+.. ..++|++++.++.|++.+.++.. .+..+...++.+++++++++ .+.|..+++.
T Consensus 899 ~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~-~~~~~l~l~~--- 974 (1466)
T PTZ00265 899 KTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSF-YFCPIVAAVL--- 974 (1466)
T ss_pred HHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH---
Confidence 66667777777776532 23799999999999999988643 23333334444444443333 2231222221
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHH-----------------HHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHHH
Q 000720 425 TIFVMVSNTPLANRQERF-HSMI-----------------MEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREI 486 (1333)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~-~~~~-----------------~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~~ 486 (1333)
+++...+...+.+..+.. .++. .+..++....++|.++|||+||.|+-|+.+.++.++.-+.
T Consensus 975 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~ 1054 (1466)
T PTZ00265 975 TGTYFIFMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDY 1054 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHH
Confidence 122222222223222211 1111 1112334678999999999999999999999888775443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 487 ERDSLKKYLYTCSAIAFLFWASPT--LVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLY 564 (1333)
Q Consensus 487 E~~~l~~~~~~~a~~~~~~~~~p~--lv~~~tF~~~~~~~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~ 564 (1333)
..+..++.....+....+..+... .+.++++|++.+..+.++.+.++.++..+.....++..+...++.+.++++|.+
T Consensus 1055 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ 1134 (1466)
T PTZ00265 1055 SNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFE 1134 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333332222222222222222 234457788888888999999998887766666778888899999999999999
Q ss_pred HHHHHhcccCCCC--CCCCCC---CCCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhH
Q 000720 565 RIQEFIKEDNQKK--PITEPT---SKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSS 638 (1333)
Q Consensus 565 RI~~fL~~~e~~~--~~~~~~---~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKST 638 (1333)
||.++++.+++.+ .....+ ....++.|+++|++|+|+++ ++.++|++ ||+|++|+.+||+||+||||||
T Consensus 1135 ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~-----~~~~vL~~lsl~i~~G~~vAIVG~SGsGKST 1209 (1466)
T PTZ00265 1135 KYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISR-----PNVPIYKDLTFSCDSKKTTAIVGETGSGKST 1209 (1466)
T ss_pred HHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCC-----CCCccccCeeEEEcCCCEEEEECCCCCCHHH
Confidence 9999998754111 101110 11223579999999999865 44579999 9999999999999999999999
Q ss_pred HHHHHhCCCcC------------------------------------------------------CCCcEEEECC-----
Q 000720 639 LLSSILGEIPR------------------------------------------------------ISGAAIKVHG----- 659 (1333)
Q Consensus 639 Ll~~ilG~~~~------------------------------------------------------~~G~~i~~~g----- 659 (1333)
|+++|+|+++| .+|++ .++|
T Consensus 1210 l~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I-~idG~di~~ 1288 (1466)
T PTZ00265 1210 VMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKI-LLDGVDICD 1288 (1466)
T ss_pred HHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeE-EECCEEHHh
Confidence 99999999998 58886 7776
Q ss_pred --------eEEEEcCCCCCCCCCHHHHhccCCc-CCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHH
Q 000720 660 --------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1333)
Q Consensus 660 --------~iayv~Q~~~i~~~Tv~enI~~g~~-~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~ 730 (1333)
++|||+|+|.+|++||||||.+|.+ ..++..+++++.+++.+.+..+|+|.+|.+|++|.+|||||||||+
T Consensus 1289 ~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIa 1368 (1466)
T PTZ00265 1289 YNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIA 1368 (1466)
T ss_pred CCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHH
Confidence 4799999999999999999999965 5666778888888899999999999999999999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--hCCCeEEEecCchhhhhcCCEEEEEeC----CeEE-EccCh
Q 000720 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL--LSQKTVLYTTHQLEFLDAADLVLVMKD----GKIE-QSGKY 803 (1333)
Q Consensus 731 LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~--~~~~TvIlvtH~~~~l~~aD~i~vl~~----G~i~-~~g~~ 803 (1333)
|||||+++|+|||||||||+||+++++.+.+. +... .+++|+|+|||+++.++.||+|++|++ |+++ +.|++
T Consensus 1369 IARALlr~p~ILLLDEaTSaLD~~sE~~I~~~-L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth 1447 (1466)
T PTZ00265 1369 IARALLREPKILLLDEATSSLDSNSEKLIEKT-IVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTH 1447 (1466)
T ss_pred HHHHHhcCCCEEEEeCcccccCHHHHHHHHHH-HHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCH
Confidence 99999999999999999999999998877654 4444 368999999999999999999999999 9955 89999
Q ss_pred HHHHhhcchHHHHHHH
Q 000720 804 EDLIADQNSELVRQMK 819 (1333)
Q Consensus 804 ~~l~~~~~~~~~~~~~ 819 (1333)
+|+++..++.+.++..
T Consensus 1448 ~eLl~~~~g~Y~~l~~ 1463 (1466)
T PTZ00265 1448 EELLSVQDGVYKKYVK 1463 (1466)
T ss_pred HHHHhcCCChHHHHHh
Confidence 9999733556666554
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-54 Score=591.11 Aligned_cols=464 Identities=17% Similarity=0.191 Sum_probs=351.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccc---CCCChHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 000720 342 ANRIGIRVRSALTVLIYKRSMAIKF---AGPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAP 417 (1333)
Q Consensus 342 ~~~~~~rir~~l~~~iy~K~L~ls~---~~~~~G~i~nlms~D~~~i~~~~~-~~~~~w~~plqi~~~l~lL~~~lG~~a 417 (1333)
..+.+.++| ..+|++.++.+. ...++|+|+|.++.|++.+.+.+. .+..+...++.++.++++++..-. +.
T Consensus 1033 ~~~~~~~l~----~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~-~~ 1107 (1522)
T TIGR00957 1033 GIQASRVLH----QDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATP-IA 1107 (1522)
T ss_pred HHHHHHHHH----HHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 344555555 555556555443 233899999999999999998754 455556666666666655543222 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 418 AFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYT 497 (1333)
Q Consensus 418 ~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~ 497 (1333)
+++.++++++...++.+..+..+..++...+.+....+..+|.++|+++||.|+||+.|.++..+.-+...+........
T Consensus 1108 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~ 1187 (1522)
T TIGR00957 1108 AVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVA 1187 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444444445555555566677789999999999999999999999888776655444332221111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 000720 498 CSAIAFLFWASPTLVSVITFGVCIL-LKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQK 576 (1333)
Q Consensus 498 ~a~~~~~~~~~p~lv~~~tF~~~~~-~~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~ 576 (1333)
.............++ ++..+.+.+ ..+.++++.+..++.+...+..|+..+......+.++.+|.+||.+|++.+++.
T Consensus 1188 ~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~ 1266 (1522)
T TIGR00957 1188 NRWLAVRLECVGNCI-VLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEA 1266 (1522)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 111111111111111 111222233 346799999999999999999999999999999999999999999999765422
Q ss_pred C---CCCCCC-CCCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCC
Q 000720 577 K---PITEPT-SKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRIS 651 (1333)
Q Consensus 577 ~---~~~~~~-~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~ 651 (1333)
+ .....+ ..+.++.|+++|++|+|+++ .+++|+| ||+|++||++||||++|||||||+++|+|+++|++
T Consensus 1267 ~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~------~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~ 1340 (1522)
T TIGR00957 1267 PWQIQETAPPSGWPPRGRVEFRNYCLRYRED------LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAE 1340 (1522)
T ss_pred cccccCCCCCCCCCCCCcEEEEEEEEEeCCC------CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCC
Confidence 1 111111 11345689999999999864 2479999 99999999999999999999999999999999999
Q ss_pred CcEEEECC-------------eEEEEcCCCCCCCCCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCC
Q 000720 652 GAAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1333)
Q Consensus 652 G~~i~~~g-------------~iayv~Q~~~i~~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g 718 (1333)
|++ .++| +++||||+|.+|++||||||....+.+++...++++.|++.+.+..+|+|.+|.+|++|
T Consensus 1341 G~I-~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G 1419 (1522)
T TIGR00957 1341 GEI-IIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGG 1419 (1522)
T ss_pred CeE-EECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCC
Confidence 996 7776 47999999999999999999843367777788899999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEE
Q 000720 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIE 798 (1333)
Q Consensus 719 ~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~ 798 (1333)
.+||||||||++||||++++|+|+|||||||+||+++.+.+ ++.++...+++|+|+|+|+++.+..||+|+||++|+|+
T Consensus 1420 ~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~I-q~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~Iv 1498 (1522)
T TIGR00957 1420 ENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLI-QSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVA 1498 (1522)
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHH-HHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999997655 45666667899999999999999999999999999999
Q ss_pred EccChHHHHhhcchHHHHHHHh
Q 000720 799 QSGKYEDLIADQNSELVRQMKA 820 (1333)
Q Consensus 799 ~~g~~~~l~~~~~~~~~~~~~~ 820 (1333)
+.|++++++++ ++.|.++..+
T Consensus 1499 E~G~~~eLl~~-~~~f~~l~~~ 1519 (1522)
T TIGR00957 1499 EFGAPSNLLQQ-RGIFYSMAKD 1519 (1522)
T ss_pred EECCHHHHHhC-CCHHHHHHHH
Confidence 99999999984 5667666543
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-54 Score=584.32 Aligned_cols=466 Identities=17% Similarity=0.185 Sum_probs=335.3
Q ss_pred HHHHHHHHHHHHHHHHHhcccc---CCCChHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 000720 345 IGIRVRSALTVLIYKRSMAIKF---AGPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFA 420 (1333)
Q Consensus 345 ~~~rir~~l~~~iy~K~L~ls~---~~~~~G~i~nlms~D~~~i~~~~~-~~~~~w~~plqi~~~l~lL~~~lG~~a~l~ 420 (1333)
.+.+.-..+-..+|++.++.+. ..+++|+|+|.++.|++.+.+... .+..+....++++.++.++..... +..++
T Consensus 980 ~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~-~~~~~ 1058 (1622)
T PLN03130 980 SSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVST-ISLWA 1058 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 3444444444556666665543 234899999999999999988654 445555555555555444332111 22222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 421 ALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSA 500 (1333)
Q Consensus 421 gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~a~ 500 (1333)
.++++++++.+..+..+..+..++..+..+....+..+|.++|+++||.|++|+.|.++..+..+...+...........
T Consensus 1059 ~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~w 1138 (1622)
T PLN03130 1059 IMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSNRW 1138 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222333333334444444444555666778899999999999999999999887666544443321111111001
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHh-cCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 000720 501 IAFLFWASPTLVSVITFG-VCILL-KTPLT-----SGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKED 573 (1333)
Q Consensus 501 ~~~~~~~~p~lv~~~tF~-~~~~~-~~~Lt-----~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~ 573 (1333)
..........++ +.++ .+.+. ++..+ ++.+-.+++....+..++..+......+.++.+|.+|+.+|++.|
T Consensus 1139 l~~~l~~~~~~~--i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~ 1216 (1622)
T PLN03130 1139 LAIRLETLGGLM--IWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLP 1216 (1622)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 100000111111 1111 12222 32221 333334445555666777777778888899999999999999876
Q ss_pred CCCCC-CC--C-CCCCCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCc
Q 000720 574 NQKKP-IT--E-PTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1333)
Q Consensus 574 e~~~~-~~--~-~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~ 648 (1333)
++.+. .+ . .+..+.++.|+++|++|+|+++ .+++|+| ||+|++||++||||++|||||||+++|+|+++
T Consensus 1217 ~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~------~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~ 1290 (1622)
T PLN03130 1217 SEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE------LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE 1290 (1622)
T ss_pred CcccccccCCCCCCCCCCCCcEEEEEEEEEeCCC------CCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC
Confidence 53211 11 1 1111234679999999999753 3479999 99999999999999999999999999999999
Q ss_pred CCCCcEEEECC-------------eEEEEcCCCCCCCCCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccC
Q 000720 649 RISGAAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVG 715 (1333)
Q Consensus 649 ~~~G~~i~~~g-------------~iayv~Q~~~i~~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig 715 (1333)
|++|++ .++| +++||||+|.+|++||||||..+.+.+++...++++.|++.+.++.+|+|.+|.+|
T Consensus 1291 p~~G~I-~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vg 1369 (1622)
T PLN03130 1291 LERGRI-LIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVS 1369 (1622)
T ss_pred CCCceE-EECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCcccc
Confidence 999996 7776 47999999999999999999998888888888999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCC
Q 000720 716 ERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDG 795 (1333)
Q Consensus 716 ~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G 795 (1333)
++|.+||||||||++||||++++|+|++||||||+||+++.+.+ ++.++...+++|+|+|+|+++.+..||+|+||++|
T Consensus 1370 e~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~I-q~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G 1448 (1622)
T PLN03130 1370 EAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALI-QKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAG 1448 (1622)
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHH-HHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999997766 45566667899999999999999999999999999
Q ss_pred eEEEccChHHHHhhcchHHHHHHHhh
Q 000720 796 KIEQSGKYEDLIADQNSELVRQMKAH 821 (1333)
Q Consensus 796 ~i~~~g~~~~l~~~~~~~~~~~~~~~ 821 (1333)
+|++.|+|++++++.++.|.++....
T Consensus 1449 ~IvE~Gt~~eLl~~~~g~f~~L~~~~ 1474 (1622)
T PLN03130 1449 RVVEFDTPENLLSNEGSAFSKMVQST 1474 (1622)
T ss_pred EEEEeCCHHHHHhCCCCHHHHHHHHc
Confidence 99999999999985456677766543
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-53 Score=491.49 Aligned_cols=515 Identities=22% Similarity=0.301 Sum_probs=386.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 000720 289 IASYIGPFLITNFVSFLSGKHDHS-SYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFA 367 (1333)
Q Consensus 289 ~~~~~~P~ll~~li~~~~~~~~~~-~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~rir~~l~~~iy~K~L~ls~~ 367 (1333)
.+....|++++..++-+++.+..+ ........+.+++++.+..+++.-.-.+....+..++-.....-+|+..+.++..
T Consensus 44 ~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~ 123 (591)
T KOG0057|consen 44 ILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLS 123 (591)
T ss_pred HhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 444457999999998886333221 0111223344445555555554444444445555555556666777777766543
Q ss_pred ---CCChHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 368 ---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFH 443 (1333)
Q Consensus 368 ---~~~~G~i~nlms~D~~~i~~~~~-~~~~~w~~plqi~~~l~lL~~~lG~~a~l~gl~~~~~~~~~~~~~~~~~~~~~ 443 (1333)
++.+|++.+.|..-...|.+++. .+..+....+++.+....+|...|...++..++.+.....+.....++-.+++
T Consensus 124 ~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~fR 203 (591)
T KOG0057|consen 124 FFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNRFR 203 (591)
T ss_pred hhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHHHH
Confidence 34899999999998888888764 34556666778888888999999933333333334444445556678888999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 000720 444 SMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLR-LREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCI- 521 (1333)
Q Consensus 444 ~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~-~R~~E~~~l~~~~~~~a~~~~~~~~~p~lv~~~tF~~~~- 521 (1333)
++++++.|+-.+..-+.|.|-.+||.|+-|+.-.++... +++.|-..++...-+ ++..+..- -.+....++..++
T Consensus 204 ~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl-~~lnfgQ~--~iFsv~~~~im~l~ 280 (591)
T KOG0057|consen 204 KAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSL-AFLNFGQK--AIFSVALTFIMVLG 280 (591)
T ss_pred HHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHH-HHHHHHHH--HHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988877755 455554444333222 22222111 1111122222222
Q ss_pred ---HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccEEEeeeEE
Q 000720 522 ---LLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEY 598 (1333)
Q Consensus 522 ---~~~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~I~i~~~~f 598 (1333)
...+.+|.+...-.-+++..|..|+..+...+..+.|+..-+.-....++.+++... ...|....+..|+|+|++|
T Consensus 281 ~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~-~~~~i~~~~~~I~F~dV~f 359 (591)
T KOG0057|consen 281 SNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQE-AALPIELFGGSIEFDDVHF 359 (591)
T ss_pred hhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhh-ccCCcccCCCcEEEEeeEE
Confidence 345679999999999999999999999999999999988877766555544442111 0123333455699999999
Q ss_pred EcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC-------------eEEEE
Q 000720 599 AWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------------KKAYV 664 (1333)
Q Consensus 599 sw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g-------------~iayv 664 (1333)
+|.++ +++|++ ||+|++||.+||+|+|||||||++++|+++.+ .+|++ .++| .||||
T Consensus 360 ~y~~k-------~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I-~IdG~dik~~~~~SlR~~Ig~V 430 (591)
T KOG0057|consen 360 SYGPK-------RKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSI-LIDGQDIKEVSLESLRQSIGVV 430 (591)
T ss_pred EeCCC-------CceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcE-EECCeeHhhhChHHhhhheeEe
Confidence 99854 579999 99999999999999999999999999999999 89996 8887 37999
Q ss_pred cCCCCCCCCCHHHHhccCCcCCH-HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEE
Q 000720 665 PQSSWIQTGTIRENILFGKDMRQ-SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYI 743 (1333)
Q Consensus 665 ~Q~~~i~~~Tv~enI~~g~~~~~-~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ill 743 (1333)
||+..+||.||.+||.+|.+.-. +...++.+..++.+-+..+|+|.+|.+||+|..|||||||||+||||+.+||+|++
T Consensus 431 PQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~ 510 (591)
T KOG0057|consen 431 PQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILL 510 (591)
T ss_pred CCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEE
Confidence 99999999999999999987432 22233344445777789999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccChHHHHhhcchHHHHHH
Q 000720 744 FDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQM 818 (1333)
Q Consensus 744 LDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~ 818 (1333)
+|||||+||.++.+.+++.+ +....+||+|+|-|+++.++.||+|+++++|++.+.|+++|+++ +++.+.++.
T Consensus 511 ~DEaTS~LD~~TE~~i~~~i-~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~-~s~~~~~~w 583 (591)
T KOG0057|consen 511 LDEATSALDSETEREILDMI-MDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA-PSELYADLW 583 (591)
T ss_pred ecCcccccchhhHHHHHHHH-HHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhh-hhhHHHHHh
Confidence 99999999999999998754 44778999999999999999999999999999999999999998 666555554
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-53 Score=577.06 Aligned_cols=465 Identities=17% Similarity=0.169 Sum_probs=335.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc---CCCChHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhH
Q 000720 341 GANRIGIRVRSALTVLIYKRSMAIKF---AGPSSGIIINMINVDVERIGDFFLY-IHRIWLLPVQVFLALVILYKNLGAA 416 (1333)
Q Consensus 341 ~~~~~~~rir~~l~~~iy~K~L~ls~---~~~~~G~i~nlms~D~~~i~~~~~~-~~~~w~~plqi~~~l~lL~~~lG~~ 416 (1333)
...+...++|. .++++.++.+. ...++|+++|.++.|++.+.+.+.. +..+....++++.++.++..... +
T Consensus 977 ~~~~~~~~lr~----~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~~~~~-~ 1051 (1495)
T PLN03232 977 SSLHAAKRLHD----AMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVST-I 1051 (1495)
T ss_pred HHHHHHHHHHH----HHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 34455555555 45555555443 2338999999999999999887543 33444444555554444432222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 417 PAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLY 496 (1333)
Q Consensus 417 a~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~ 496 (1333)
..++.+.+.++.........+..+..++.....+..-.+..+|.++|+++||.|++|+.|.++..+..+...+.......
T Consensus 1052 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~ 1131 (1495)
T PLN03232 1052 SLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTS 1131 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222222222223333445555556666677889999999999999999999988776655444432221111
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHh-cCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 497 TCSAIAFLFWASPTLVSVITF-GVCILL-KTPLT-----SGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEF 569 (1333)
Q Consensus 497 ~~a~~~~~~~~~p~lv~~~tF-~~~~~~-~~~Lt-----~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~f 569 (1333)
......+..... ...++.+ +.+.+. .+.+. ++.+-.+++....+..|+..+...+..+..+.+|.+||.++
T Consensus 1132 ~~~wl~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~ 1209 (1495)
T PLN03232 1132 SNRWLTIRLETL--GGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNY 1209 (1495)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111011100000 0111112 122222 22221 22222345555667789999999999999999999999999
Q ss_pred hcccCCCCC-CC--CCC-CCCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHh
Q 000720 570 IKEDNQKKP-IT--EPT-SKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSIL 644 (1333)
Q Consensus 570 L~~~e~~~~-~~--~~~-~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~il 644 (1333)
++.+++.+. .+ ..+ ..+.++.|+++|++|+|+++ .+++|+| ||+|++||++||||++|||||||+++|+
T Consensus 1210 ~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~------~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~ 1283 (1495)
T PLN03232 1210 IDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG------LPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALF 1283 (1495)
T ss_pred hcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCC------CCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 986652211 11 111 11234579999999999643 3579999 9999999999999999999999999999
Q ss_pred CCCcCCCCcEEEECC-------------eEEEEcCCCCCCCCCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCc
Q 000720 645 GEIPRISGAAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDL 711 (1333)
Q Consensus 645 G~~~~~~G~~i~~~g-------------~iayv~Q~~~i~~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~ 711 (1333)
|+++|++|++ .++| +++||||+|.+|++||||||..+.+.+++...++++.+++.+.++.+|+|.+
T Consensus 1284 rl~~p~~G~I-~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLd 1362 (1495)
T PLN03232 1284 RIVELEKGRI-MIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLD 1362 (1495)
T ss_pred CCCcCCCceE-EECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCC
Confidence 9999999996 7776 4799999999999999999999888888888899999999999999999999
Q ss_pred cccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEE
Q 000720 712 SVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLV 791 (1333)
Q Consensus 712 t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~v 791 (1333)
|.+|++|.+||||||||++||||++++|+|+|||||||+||+++.+.+. +.++...+++|+|+|+|+++.+..||+|+|
T Consensus 1363 t~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq-~~L~~~~~~~TvI~IAHRl~ti~~~DrIlV 1441 (1495)
T PLN03232 1363 AEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQ-RTIREEFKSCTMLVIAHRLNTIIDCDKILV 1441 (1495)
T ss_pred ceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHH-HHHHHHcCCCEEEEEeCCHHHHHhCCEEEE
Confidence 9999999999999999999999999999999999999999999977664 556666789999999999999999999999
Q ss_pred EeCCeEEEccChHHHHhhcchHHHHHHHh
Q 000720 792 MKDGKIEQSGKYEDLIADQNSELVRQMKA 820 (1333)
Q Consensus 792 l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 820 (1333)
|++|+|++.|+++|++++.+..+.++...
T Consensus 1442 L~~G~ivE~Gt~~eLl~~~~~~f~~l~~~ 1470 (1495)
T PLN03232 1442 LSSGQVLEYDSPQELLSRDTSAFFRMVHS 1470 (1495)
T ss_pred EECCEEEEECCHHHHHhCCCCHHHHHHHH
Confidence 99999999999999998555567776654
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-53 Score=571.96 Aligned_cols=459 Identities=17% Similarity=0.188 Sum_probs=342.3
Q ss_pred HHHHHHHHHhcccc---CCCChHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 000720 353 LTVLIYKRSMAIKF---AGPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFV 428 (1333)
Q Consensus 353 l~~~iy~K~L~ls~---~~~~~G~i~nlms~D~~~i~~~~~-~~~~~w~~plqi~~~l~lL~~~lG~~a~l~gl~~~~~~ 428 (1333)
+-..+|++.++.+. ...+.|+|+|.++.|++.+.+.+. .+..+....+.++.++.+++..-. +..++.+++.++.
T Consensus 1033 l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~~p-~~~~~~i~~~~~~ 1111 (1560)
T PTZ00243 1033 MHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSASQP-FVLVALVPCGYLY 1111 (1560)
T ss_pred HHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 33555566655543 233899999999999999998754 355555556666655555443222 3333222222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 000720 429 MVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFL-FWA 507 (1333)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~a~~~~~-~~~ 507 (1333)
..+...+.+..+..++.....++.-.+..+|.++|+++||.|++|+.|.++..+.-+...+...+........... ...
T Consensus 1112 ~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~~~~~~l 1191 (1560)
T PTZ00243 1112 YRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVEFL 1191 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555556666666677777899999999999999999999988887554333222111111111111111 111
Q ss_pred -HHHHHHHHHHHHHH--HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC--CC---
Q 000720 508 -SPTLVSVITFGVCI--LLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKK--PI--- 579 (1333)
Q Consensus 508 -~p~lv~~~tF~~~~--~~~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~--~~--- 579 (1333)
....+.++.++++. .....++++.+..++.+...+..|+..+...+..+.++++|++||.+|++..++++ ..
T Consensus 1192 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~~ 1271 (1560)
T PTZ00243 1192 SNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELDEE 1271 (1560)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccc
Confidence 11111122222222 22345788888888888788899999999999999999999999999996432110 00
Q ss_pred --------------------CC--C----CCCCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCC
Q 000720 580 --------------------TE--P----TSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSV 632 (1333)
Q Consensus 580 --------------------~~--~----~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~ 632 (1333)
+. . +.....+.|+|+|++|+|+++ ..++|+| ||+|++||++||||++
T Consensus 1272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~------~~~vL~~vsf~I~~GekVaIVGrT 1345 (1560)
T PTZ00243 1272 VDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREG------LPLVLRGVSFRIAPREKVGIVGRT 1345 (1560)
T ss_pred ccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCC------CCceeecceEEECCCCEEEEECCC
Confidence 00 0 011123579999999999754 3468999 9999999999999999
Q ss_pred CCChhHHHHHHhCCCcCCCCcEEEECC-------------eEEEEcCCCCCCCCCHHHHhccCCcCCHHHHHHHHHHccc
Q 000720 633 GSGKSSLLSSILGEIPRISGAAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCAL 699 (1333)
Q Consensus 633 GsGKSTLl~~ilG~~~~~~G~~i~~~g-------------~iayv~Q~~~i~~~Tv~enI~~g~~~~~~~~~~v~~~~~l 699 (1333)
|||||||+++|+|+++|.+|++ .++| +++||||+|.+|++||||||..+.+.+++...++++.|++
T Consensus 1346 GSGKSTLl~lLlrl~~p~~G~I-~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l 1424 (1560)
T PTZ00243 1346 GSGKSTLLLTFMRMVEVCGGEI-RVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGL 1424 (1560)
T ss_pred CCCHHHHHHHHhCCCCCCCcEE-EECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCC
Confidence 9999999999999999999996 7776 4799999999999999999988777778888899999999
Q ss_pred chHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecC
Q 000720 700 NQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSN-SDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTH 778 (1333)
Q Consensus 700 ~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~-~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH 778 (1333)
.+.++.+|+|.+|.+|++|.+||||||||++||||++++ |+|+|||||||+||+++.+.+. +.++...+++|+|+|+|
T Consensus 1425 ~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq-~~L~~~~~~~TvI~IAH 1503 (1560)
T PTZ00243 1425 RERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQ-ATVMSAFSAYTVITIAH 1503 (1560)
T ss_pred hHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHH-HHHHHHCCCCEEEEEec
Confidence 999999999999999999999999999999999999996 8999999999999999977664 45666678899999999
Q ss_pred chhhhhcCCEEEEEeCCeEEEccChHHHHhhcchHHHHHHHh
Q 000720 779 QLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKA 820 (1333)
Q Consensus 779 ~~~~l~~aD~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 820 (1333)
+++.+..||+|++|++|+|++.|+++|++++++..|.++...
T Consensus 1504 Rl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~ 1545 (1560)
T PTZ00243 1504 RLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEA 1545 (1560)
T ss_pred cHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHH
Confidence 999999999999999999999999999997556677777654
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-52 Score=478.02 Aligned_cols=458 Identities=21% Similarity=0.323 Sum_probs=341.3
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCC---ChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhHHH
Q 000720 344 RIGIRVRSALTVLIYKRSMAIKFAGP---SSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVIL--YKNLGAAPA 418 (1333)
Q Consensus 344 ~~~~rir~~l~~~iy~K~L~ls~~~~---~~G~i~nlms~D~~~i~~~~~~~~~~w~~plqi~~~l~lL--~~~lG~~a~ 418 (1333)
....|+=+.+.-.+|+|....+.... .+|++.|.+..|++.+++....+...|...+-++++..+. +..++ .+.
T Consensus 84 ~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~-~Al 162 (573)
T COG4987 84 DATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIP-LAL 162 (573)
T ss_pred HHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH-HHH
Confidence 34557777888889999988776533 8999999999999999999877777776655444433332 44444 555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 419 FAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTC 498 (1333)
Q Consensus 419 l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~ 498 (1333)
+.++..++..+.+...+.+.-++..++..+.+..=-.-..+.+.|+.-.+++|-++.|.+.+++. |..|.+..+...
T Consensus 163 ll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~---e~~~~~~q~k~~ 239 (573)
T COG4987 163 LLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEAT---EASWLKAQRKQA 239 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 66665555555555666666666666666666666677889999999999999999998887653 333333222111
Q ss_pred ---HHHHHHHHH-HHHHHH--HHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000720 499 ---SAIAFLFWA-SPTLVS--VITFGVCILLKTPLT-SGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIK 571 (1333)
Q Consensus 499 ---a~~~~~~~~-~p~lv~--~~tF~~~~~~~~~Lt-~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~ 571 (1333)
....+.... .-.++. .++++.-.-.| .++ +..+...++.|..+..-.-.-|.++..+-++..|.+|+.+.+.
T Consensus 240 ~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G-~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~ 318 (573)
T COG4987 240 RFTGLSDAILLLIAGLLVIGLLLWMAAQVGAG-ALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILD 318 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCC-CcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhcc
Confidence 111122111 111121 11221111122 233 2222222222322221111223667788889999999999998
Q ss_pred ccCCCCCC-CCCCCCCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcC
Q 000720 572 EDNQKKPI-TEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR 649 (1333)
Q Consensus 572 ~~e~~~~~-~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~ 649 (1333)
++++.... +..+. .+..++++|++|+|+.+ +.+.|+| ||++++||++||+|++|||||||++.|.|-++|
T Consensus 319 q~~e~~~~~~~~~~--~~~~l~~~~vsF~y~~~------~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~ 390 (573)
T COG4987 319 QKPEVTFPDEQTAT--TGQALELRNVSFTYPGQ------QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDP 390 (573)
T ss_pred CCcccCCCccccCC--ccceeeeccceeecCCC------ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCC
Confidence 87632211 11111 12279999999999976 4689999 999999999999999999999999999999999
Q ss_pred CCCcEEEECC-------------eEEEEcCCCCCCCCCHHHHhccCCcC-CHHHHHHHHHHcccchHHHhhcCCCccccC
Q 000720 650 ISGAAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVG 715 (1333)
Q Consensus 650 ~~G~~i~~~g-------------~iayv~Q~~~i~~~Tv~enI~~g~~~-~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig 715 (1333)
++|++ ..+| .+++++|.+.+|++|+|||+..+++- .++...++++..+|++-++..|+|.+|.+|
T Consensus 391 ~~G~i-~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lg 469 (573)
T COG4987 391 QQGSI-TLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLG 469 (573)
T ss_pred CCCee-eECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhc
Confidence 99997 7766 46899999999999999999998764 456677889999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCC
Q 000720 716 ERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDG 795 (1333)
Q Consensus 716 ~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G 795 (1333)
|.|..||||||||++|||++.+|++++||||||.|||+.|++++.+.+ ....+|||+|+|||++..++.+|+|++|++|
T Consensus 470 e~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll-~~~~~~kTll~vTHrL~~le~~drIivl~~G 548 (573)
T COG4987 470 EGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALL-FEHAEGKTLLMVTHRLRGLERMDRIIVLDNG 548 (573)
T ss_pred cCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHH-HHHhcCCeEEEEecccccHhhcCEEEEEECC
Confidence 999999999999999999999999999999999999999999998754 4556799999999999999999999999999
Q ss_pred eEEEccChHHHHhhcchHHHHH
Q 000720 796 KIEQSGKYEDLIADQNSELVRQ 817 (1333)
Q Consensus 796 ~i~~~g~~~~l~~~~~~~~~~~ 817 (1333)
+|+++|+|++++. .++.+.++
T Consensus 549 kiie~G~~~~Ll~-~~g~~~~l 569 (573)
T COG4987 549 KIIEEGTHAELLA-NNGRYKRL 569 (573)
T ss_pred eeeecCCHHhhhc-cccHHHHH
Confidence 9999999999998 55555444
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-52 Score=517.51 Aligned_cols=504 Identities=14% Similarity=0.148 Sum_probs=360.2
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 269 IIH-AVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGI 347 (1333)
Q Consensus 269 l~~-~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~ 347 (1333)
+++ .+++.++...++.++..++..+.|++++.+++..... ... ...+..++++.. .++.....+...+.+.
T Consensus 11 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~----~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 82 (555)
T TIGR01194 11 LLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFL----GQG-SLFSFGGLCLLA---LLFRIGADIFPAYAGM 82 (555)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc----cch-HHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 456 6788888888999999999999999998887532110 101 111111222221 2222233344566777
Q ss_pred HHHHHHHHHHHHHHhccccC---CCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 000720 348 RVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFS 424 (1333)
Q Consensus 348 rir~~l~~~iy~K~L~ls~~---~~~~G~i~nlms~D~~~i~~~~~~~~~~w~~plqi~~~l~lL~~~lG~~a~l~gl~~ 424 (1333)
++...+...+|+|.++++.. ..++|+++|.++.|++.+.++...+..+....+.+++++++++.. .|..++..++.
T Consensus 83 ~~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~L~li~l~~ 161 (555)
T TIGR01194 83 HIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFIFPPIAIALAIFFFCIAYLAYL-SVPMFAITISA 161 (555)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHH
Confidence 78888888899999987653 238999999999999999987655545555555555444444322 22333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHH--HHHHHH----HHHHHHHHHHHHHHHHHH
Q 000720 425 TIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQ--EFLKKL----LRLREIERDSLKKYLYTC 498 (1333)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~--~f~~~i----~~~R~~E~~~l~~~~~~~ 498 (1333)
+++.+.+..+..++.++...+..+..++..+...|.+.|+++||.++.|+ ...+++ ++.|+...+..+. .
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 237 (555)
T TIGR01194 162 IIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILI----F 237 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHH----H
Confidence 33334444455566667777777888888999999999999999999853 333333 3333333222111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-
Q 000720 499 SAIAFLFWASPTLVSVITFGVCIL---LKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDN- 574 (1333)
Q Consensus 499 a~~~~~~~~~p~lv~~~tF~~~~~---~~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e- 574 (1333)
.....+....+. +.++.+++ ..+.++.+.+++.+.+...+..|+..+...+..+.++++|.+||.++++.++
T Consensus 238 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~ 313 (555)
T TIGR01194 238 IAAENFGQLLFF----LLIGCALFAAAMFASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNE 313 (555)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 111111111111 11111111 1257899999999999999999999999999999999999999999986422
Q ss_pred C-CC--CCCCC-----CCCCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhC
Q 000720 575 Q-KK--PITEP-----TSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILG 645 (1333)
Q Consensus 575 ~-~~--~~~~~-----~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG 645 (1333)
+ .. ..+.. +.......|+++|++|+|++.+. ...++|+| |+++++||+++|+||||||||||+++|+|
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~---~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g 390 (555)
T TIGR01194 314 PEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEG---SEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCG 390 (555)
T ss_pred ccccccccccccccccccCCCCceEEEEEEEEEeCCCCC---CcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 1 10 00000 11112356999999999975300 12468999 99999999999999999999999999999
Q ss_pred CCcCCCCcEEEECC-------------eEEEEcCCCCCCCCCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCcc
Q 000720 646 EIPRISGAAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLS 712 (1333)
Q Consensus 646 ~~~~~~G~~i~~~g-------------~iayv~Q~~~i~~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t 712 (1333)
+++|++|++ .++| .++|++|+|+++++|+++|+ ..+..++..+++++.+++.++++.+|+|.+|
T Consensus 391 ~~~p~~G~i-~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~--~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t 467 (555)
T TIGR01194 391 LYIPQEGEI-LLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE--GEHASLDNAQQYLQRLEIADKVKIEDGGFST 467 (555)
T ss_pred CCCCCCcEE-EECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc--ccchhHHHHHHHHHHcCCchhhcccccccCC
Confidence 999999986 6765 36999999999999999995 2334455667788888999899999999887
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEecCchhhhhcCCEEEE
Q 000720 713 VVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDAADLVLV 791 (1333)
Q Consensus 713 ~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~-~~~~TvIlvtH~~~~l~~aD~i~v 791 (1333)
. .+||||||||++||||++++|+++|||||||+||+++.+++.+.+++.. .+++|+|++||+++.++.||+|++
T Consensus 468 ~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~ 542 (555)
T TIGR01194 468 T-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIK 542 (555)
T ss_pred c-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEE
Confidence 3 7999999999999999999999999999999999999998887666544 468999999999999989999999
Q ss_pred EeCCeEEEc
Q 000720 792 MKDGKIEQS 800 (1333)
Q Consensus 792 l~~G~i~~~ 800 (1333)
|++|++++.
T Consensus 543 l~~G~i~~~ 551 (555)
T TIGR01194 543 LAAGCIVKD 551 (555)
T ss_pred EECCEEEEe
Confidence 999999864
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-50 Score=504.94 Aligned_cols=500 Identities=15% Similarity=0.158 Sum_probs=344.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 265 LPQVIIHAVWKSLALNAAFAGVNTIASYIG-PFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGAN 343 (1333)
Q Consensus 265 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~-P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~ 343 (1333)
+++.+++.+++.++...++.++..++..+. |++.+.+++.+.+ . ... -+.+++.+++..++..+ ..+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~-~---~~~-~~~~~~~~~~~~~~~~~----~~~~~~ 73 (547)
T PRK10522 3 LLRLVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETADT-S---LLV-LPEFLGLLLLLMAVTLG----SQLALT 73 (547)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-c---chH-HHHHHHHHHHHHHHHHH----HHHHHH
Confidence 566777888888888888888888888764 6777888875532 1 111 11111111112222222 222333
Q ss_pred HHHHHHHHHHHHHHHHHHhcccc---CCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 000720 344 RIGIRVRSALTVLIYKRSMAIKF---AGPSSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFA 420 (1333)
Q Consensus 344 ~~~~rir~~l~~~iy~K~L~ls~---~~~~~G~i~nlms~D~~~i~~~~~~~~~~w~~plqi~~~l~lL~~~lG~~a~l~ 420 (1333)
+.+.++...+...+|+|.++++. ...++|+++|.++.|++.+..+...+..++...+.+++++++++.. .|..+++
T Consensus 74 ~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~~l~~~~~~~~~~i~~~~~l~~~-~~~l~li 152 (547)
T PRK10522 74 TLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFVRLPELVQGIILTLGSAAYLAWL-SPKMLLV 152 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHH
Confidence 44555555556666777776653 2348999999999999999887666667777778777777666643 3255555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhc--hHHHHHHHH----HHHHHHHHHHHHHH
Q 000720 421 ALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLS--WEQEFLKKL----LRLREIERDSLKKY 494 (1333)
Q Consensus 421 gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~--wE~~f~~~i----~~~R~~E~~~l~~~ 494 (1333)
.++++++.+.+...+.++..+..++.++..+++.+..+|.++|++++++.+ .++.+.++. ++.++...+..+
T Consensus 153 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 230 (547)
T PRK10522 153 TAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELTLNRERAEYVFENEYEPDAQEYRHHIIRADT-- 230 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhccHHHHHHHHHHHHhHHHHHHHhhhHHHHH--
Confidence 555555555566777888888888889999999999999999999998433 223344443 333333332211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000720 495 LYTCSAIAFLFWASPTLVSVITFGVCILLKTP---LTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIK 571 (1333)
Q Consensus 495 ~~~~a~~~~~~~~~p~lv~~~tF~~~~~~~~~---Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~ 571 (1333)
......... .++..+.++.+.+.++. .+.+.+.........+..|+..+...+..+.+++++.+||.+++.
T Consensus 231 --~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~ 304 (547)
T PRK10522 231 --FHLSAVNWS----NIMMLGAIGLVFYMANSLGWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLAL 304 (547)
T ss_pred --HHHHHHHHH----HHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 111111111 11111122222222211 222222222222333668999999999999999999999999986
Q ss_pred ccCCCCCCCCCCCCCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCC
Q 000720 572 EDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI 650 (1333)
Q Consensus 572 ~~e~~~~~~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~ 650 (1333)
.+++++.....+ .+....++++|++|+|+.+ ++.|+| |+++++||+++|+||||||||||+++|+|+++|+
T Consensus 305 ~~~~~~~~~~~~-~~~~~~i~~~~v~f~y~~~-------~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~ 376 (547)
T PRK10522 305 APYKAEFPRPQA-FPDWQTLELRNVTFAYQDN-------GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQ 376 (547)
T ss_pred cccccccccccc-cCcCceEEEEEEEEEeCCC-------CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 544221111111 1112469999999999743 368999 9999999999999999999999999999999999
Q ss_pred CCcEEEECC-------------eEEEEcCCCCCCCCCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCC
Q 000720 651 SGAAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGER 717 (1333)
Q Consensus 651 ~G~~i~~~g-------------~iayv~Q~~~i~~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~ 717 (1333)
+|++ .++| +++|++|+|.++++|++|| +...+++..++.++.+++..+... ++|. .+
T Consensus 377 ~G~i-~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~~-~~~~-----~~ 446 (547)
T PRK10522 377 SGEI-LLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKLEL-EDGR-----IS 446 (547)
T ss_pred CeEE-EECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhhhc-cccC-----CC
Confidence 9986 6655 4799999999999999999 344455566667777666554432 2221 24
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhhcCCEEEEEeCCe
Q 000720 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLVMKDGK 796 (1333)
Q Consensus 718 g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~~aD~i~vl~~G~ 796 (1333)
|.+||||||||++||||++++|+++|||||||+||+++++.+.+.+.+... +++|+|+|||+++.+..||+|++|++|+
T Consensus 447 G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~ 526 (547)
T PRK10522 447 NLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQ 526 (547)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCE
Confidence 789999999999999999999999999999999999998888776544433 4899999999999999999999999999
Q ss_pred EEEc
Q 000720 797 IEQS 800 (1333)
Q Consensus 797 i~~~ 800 (1333)
+++.
T Consensus 527 i~e~ 530 (547)
T PRK10522 527 LSEL 530 (547)
T ss_pred EEEe
Confidence 9876
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-51 Score=512.06 Aligned_cols=434 Identities=21% Similarity=0.295 Sum_probs=383.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhcccc-ccc--ch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 894 PVILLCQVLFQALQMGSNYWIAWATDEK-RKV--SR-EQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITS 969 (1333)
Q Consensus 894 ~~~ll~~~l~~~~~~~~~~wl~~~~~~~-~~~--~~-~~~l~vy~~l~~~~~i~~~~~~~~~~~~~~~~s~~L~~~ll~~ 969 (1333)
.-+++..++.+++.+++++..+..+|.. +.. +. ......+++.++...++.++|.+++.+.+.+....+-.+.++|
T Consensus 157 ~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~~~~h 236 (709)
T COG2274 157 FEVLLASLLLQLLALATPLFSQIVIDKVLPDASRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRH 236 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3455566778888899999988877642 222 22 2233445566777889999999999999999999999999999
Q ss_pred HhcCccccccccCcchhHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 000720 970 VFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYIT 1049 (1333)
Q Consensus 970 il~ap~~fFd~tp~GrIlnRfs~Di~~vd~~l~~~l~~~~~~~~~~l~~ivv~~~~~~~l~lv~ipl~~~~~~~~~~y~~ 1049 (1333)
+++.|++||.++++|++++|++ |++.|.+.+...+...+..++..+..+++|++.+|+++++.+..++++..+.....+
T Consensus 237 ll~Lpl~~f~~r~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~ 315 (709)
T COG2274 237 LLRLPLSYFEKRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQP 315 (709)
T ss_pred HHcCcHHHccCCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999997 899999999999999999999999999999999999999988888888777777777
Q ss_pred HHHHHHHHHhHhhchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 1050 TARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVL 1129 (1333)
Q Consensus 1050 ~srel~rl~~~~~spl~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~ll~~~~~~~~~ 1129 (1333)
..|+..+...+..+...++..|++.|+.|||+.+.|+++..++++..+++.+..+.......|......++..+...+++
T Consensus 316 ~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL 395 (709)
T COG2274 316 LLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLIL 395 (709)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777778888899999999999999999999999999999999999999999999999999999888887777666
Q ss_pred HHHHh-ccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCcccCCCCCCCCCCCcccE
Q 000720 1130 IILVT-LPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKI 1208 (1333)
Q Consensus 1130 ~~~~~-~~~~~~~~g~~gl~l~y~l~l~~~l~~~v~~~~~le~~~~SveRI~~~~~~p~E~~~~~~~~~~~~~wp~~G~I 1208 (1333)
++++. ...+..+.|..-.+.+.+-.+..++..++..+.+++....+.||+.+.++.|+|.+. +..+...|+.+|+|
T Consensus 396 ~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~---~~~~~~~~~~~g~I 472 (709)
T COG2274 396 WFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEG---DKTLIHLPKLQGEI 472 (709)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc---ccccccccccCceE
Confidence 66543 345677888777777888888999999999999999999999999999999988542 22244556778999
Q ss_pred EEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeEe
Q 000720 1209 ELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSII 1288 (1333)
Q Consensus 1209 ~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isiV 1288 (1333)
+|+||+|+|+++.|++|+|+|++|+|||+|||||+||||||||+++|.|+|+|++|+|++||+|++++++++||++|++|
T Consensus 473 ~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V 552 (709)
T COG2274 473 EFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYV 552 (709)
T ss_pred EEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEE
Confidence 99999999999988999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccchhhhcCCCC-CCCHHHHHHHHHhCCCCcccccCC
Q 000720 1289 PQDPMLFQGTVRTNLDPLE-QHSDQEIWEVKISKLLTHKSYQCE 1331 (1333)
Q Consensus 1289 pQdp~LF~GTIR~NLdp~~-~~sDeeI~~aL~~~~L~~~~~~~~ 1331 (1333)
||||+||+|||||||...+ +.+||||++|++.++..+.+.++|
T Consensus 553 ~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP 596 (709)
T COG2274 553 LQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLP 596 (709)
T ss_pred cccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcc
Confidence 9999999999999998764 578999999999999999888776
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-50 Score=545.95 Aligned_cols=466 Identities=20% Similarity=0.226 Sum_probs=344.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccc---CCCChHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhh
Q 000720 340 FGANRIGIRVRSALTVLIYKRSMAIKF---AGPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGA 415 (1333)
Q Consensus 340 ~~~~~~~~rir~~l~~~iy~K~L~ls~---~~~~~G~i~nlms~D~~~i~~~~~-~~~~~w~~plqi~~~l~lL~~~lG~ 415 (1333)
+...+...+++. .++++.++.+. ...++|+|+|.++.|++.+.+.+. .+..+....+.+++.+++++...+
T Consensus 951 ~~~~~~~~~l~~----~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p- 1025 (1490)
T TIGR01271 951 HTLLTVSKRLHE----QMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQP- 1025 (1490)
T ss_pred HHHHHHHHHHHH----HHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 334445555554 45555554432 233889999999999999998654 455555556666666665554444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 416 APAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYL 495 (1333)
Q Consensus 416 ~a~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~ 495 (1333)
+..++.++++++...+..+..+..+..++.....+....+..+|.++|+.+||.|+||+.|.++..+.-+...+......
T Consensus 1026 ~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~ 1105 (1490)
T TIGR01271 1026 YIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYL 1105 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 43333333333344444455555555666667777888899999999999999999999999887765432211111100
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 000720 496 YTCSAIAFLF-WASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDN 574 (1333)
Q Consensus 496 ~~~a~~~~~~-~~~p~lv~~~tF~~~~~~~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e 574 (1333)
.......+.. .....++.++.+. .+.....+++.+-.++++...+..++..+...+..+..+++|.+||.+|++.++
T Consensus 1106 ~~~~wl~~~~~~i~~~~~~~~~~l--~~~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~ 1183 (1490)
T TIGR01271 1106 STLRWFQMRIDIIFVFFFIAVTFI--AIGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQ 1183 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 0000000000 0000111111111 111123456666666666677788888888888999999999999999997654
Q ss_pred CCC-CCC--------------C---CCCCCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCC
Q 000720 575 QKK-PIT--------------E---PTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSG 635 (1333)
Q Consensus 575 ~~~-~~~--------------~---~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsG 635 (1333)
+.+ ..+ . .+..+..+.|+++|++|+|+++ .+++|+| ||+|++||++||||++|||
T Consensus 1184 e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~------~~~vL~~is~~I~~GekvaIvGrSGsG 1257 (1490)
T TIGR01271 1184 EEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA------GRAVLQDLSFSVEGGQRVGLLGRTGSG 1257 (1490)
T ss_pred ccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC------CcceeeccEEEEcCCCEEEEECCCCCC
Confidence 211 100 0 0111234679999999999864 3579999 9999999999999999999
Q ss_pred hhHHHHHHhCCCcCCCCcEEEECC-------------eEEEEcCCCCCCCCCHHHHhccCCcCCHHHHHHHHHHcccchH
Q 000720 636 KSSLLSSILGEIPRISGAAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQD 702 (1333)
Q Consensus 636 KSTLl~~ilG~~~~~~G~~i~~~g-------------~iayv~Q~~~i~~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d 702 (1333)
||||+++|+|+++ .+|++ .++| +++|+||+|.+|++||||||....+++++...++++.|++.+.
T Consensus 1258 KSTLl~lL~rl~~-~~G~I-~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~ 1335 (1490)
T TIGR01271 1258 KSTLLSALLRLLS-TEGEI-QIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSV 1335 (1490)
T ss_pred HHHHHHHHhhhcC-CCcEE-EECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHH
Confidence 9999999999997 78986 7776 4799999999999999999987667778888899999999999
Q ss_pred HHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhh
Q 000720 703 IEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEF 782 (1333)
Q Consensus 703 ~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~ 782 (1333)
+..+|+|.+|.+|++|.+||||||||++||||++++|+|+|||||||+||+++.+.+.+ .++...+++|||+|||+++.
T Consensus 1336 i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~-~L~~~~~~~TvI~IaHRl~t 1414 (1490)
T TIGR01271 1336 IEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRK-TLKQSFSNCTVILSEHRVEA 1414 (1490)
T ss_pred HHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHH-HHHHHcCCCEEEEEecCHHH
Confidence 99999999999999999999999999999999999999999999999999999777654 55666788999999999999
Q ss_pred hhcCCEEEEEeCCeEEEccChHHHHhhcchHHHHHHHhhh
Q 000720 783 LDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHR 822 (1333)
Q Consensus 783 l~~aD~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 822 (1333)
+..+|+|++|++|+|++.|+++++++ .+..|.++..+..
T Consensus 1415 i~~~DrIlvL~~G~ivE~g~p~~Ll~-~~~~f~~l~~~~~ 1453 (1490)
T TIGR01271 1415 LLECQQFLVIEGSSVKQYDSIQKLLN-ETSLFKQAMSAAD 1453 (1490)
T ss_pred HHhCCEEEEEECCEEEEeCCHHHHHc-CCcHHHHHHHHhC
Confidence 99999999999999999999999997 5667777766544
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-52 Score=468.66 Aligned_cols=523 Identities=18% Similarity=0.276 Sum_probs=378.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 287 NTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAK------TVESLTQRQWYFGANRIGIRVRSALTVLIYKR 360 (1333)
Q Consensus 287 ~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~------~~~~l~~~~~~~~~~~~~~rir~~l~~~iy~K 360 (1333)
.-++...-|.+.+.+++-+..+..+ .+..-+.++...|+-. ++.++-...|--..+-...++...+..-+.+-
T Consensus 227 ~rli~~~~pi~~k~iv~~ltap~~~-~~~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~L 305 (790)
T KOG0056|consen 227 GRLINVSLPILSKWIVDELTAPDTF-QYSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIETELFRHLHNL 305 (790)
T ss_pred HHHHhhhhHHhHHHHHHhhcCcchh-hHHHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHHHHHHHHHHHhh
Confidence 3344445588888888877644432 2221233333222221 11111111111111112223444444444444
Q ss_pred HhccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 361 SMAIKFAGPSSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQE 440 (1333)
Q Consensus 361 ~L~ls~~~~~~G~i~nlms~D~~~i~~~~~~~~~~w~~plqi~~~l~lL~~~lG~~a~l~gl~~~~~~~~~~~~~~~~~~ 440 (1333)
+++++- .+.+||+...|..-.+.+.-.-.-+..+--..+.+++++...+....+|-.+..+..+.+...+...+...-.
T Consensus 306 SlrwHL-~rrtGeVLrvmdrGtssvtll~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRT 384 (790)
T KOG0056|consen 306 SLRWHL-NRRTGEVLRVMDRGTSSVTLLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRT 384 (790)
T ss_pred ceeeee-cccccceeehhccCcchhhHHHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHhheeeeeehhhH
Confidence 444433 3478999999887776665222223344444566677766665555545445444455554445555666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 441 RFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQ----EFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLVSVIT 516 (1333)
Q Consensus 441 ~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~----~f~~~i~~~R~~E~~~l~~~~~~~a~~~~~~~~~p~lv~~~t 516 (1333)
++|+++..+-.+--....+.|-|..+||.|+-|+ .+.+.|.+.-+.|.+.+....++...-..++ .--+.....
T Consensus 385 k~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii--~lgll~gsl 462 (790)
T KOG0056|consen 385 KARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGII--GLGLLAGSL 462 (790)
T ss_pred HHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--hhHHhhhhh
Confidence 7787776655554555678888999999999886 5666777777777765544333322211111 111222333
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CCCCCCCCCCCCCccEEEee
Q 000720 517 FGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQ-KKPITEPTSKASDVAIDIEA 595 (1333)
Q Consensus 517 F~~~~~~~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~-~~~~~~~~~~~~~~~I~i~~ 595 (1333)
+.+|.+..+.+|.|+..-.+.++..|.+|++.+.....++....+-++|+.+.++++++ .|.....|-....+.|+++|
T Consensus 463 l~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~pl~~~~G~i~fsn 542 (790)
T KOG0056|consen 463 LCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAPPLKVTQGKIEFSN 542 (790)
T ss_pred eeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCCCCCccccCCeEEEEE
Confidence 55565667789999988888888899999999999999999999999999999987762 22222233334567899999
Q ss_pred eEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC-------------eE
Q 000720 596 GEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------------KK 661 (1333)
Q Consensus 596 ~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g-------------~i 661 (1333)
++|+|+++ +|+|+| ||++++|+.+|++||+|+||||+++.+.+..+..+|.+ .++| +|
T Consensus 543 vtF~Y~p~-------k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI-~iDgqdIrnvt~~SLRs~I 614 (790)
T KOG0056|consen 543 VTFAYDPG-------KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSI-TIDGQDIRNVTQSSLRSSI 614 (790)
T ss_pred eEEecCCC-------CceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceE-EEcCchHHHHHHHHHHHhc
Confidence 99999864 799999 99999999999999999999999999999999999986 8887 37
Q ss_pred EEEcCCCCCCCCCHHHHhccCCcCC-HHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCC
Q 000720 662 AYVPQSSWIQTGTIRENILFGKDMR-QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSD 740 (1333)
Q Consensus 662 ayv~Q~~~i~~~Tv~enI~~g~~~~-~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ 740 (1333)
|.||||..+||.||..||.++++-. .+...++.++.+..+.+-.+|+|..|.+||||-.||||+|||||+||++.++|.
T Consensus 615 GVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~ 694 (790)
T KOG0056|consen 615 GVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPS 694 (790)
T ss_pred CcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCc
Confidence 9999999999999999999998642 233445567777888899999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccChHHHHhhcchHHHHHHHh
Q 000720 741 VYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKA 820 (1333)
Q Consensus 741 illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 820 (1333)
|++|||.|||||.++.+.| +.++..+.+++|.|+|.|+++.+-+||.|++++||+|+|.|+++|+...+++.+.++.+.
T Consensus 695 iIlLDEATSALDT~tER~I-QaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Ya~MWq~ 773 (790)
T KOG0056|consen 695 IILLDEATSALDTNTERAI-QAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYADMWQA 773 (790)
T ss_pred EEEEcchhhhcCCccHHHH-HHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCcHHHHHHH
Confidence 9999999999999997776 567778889999999999999999999999999999999999999998667888887755
Q ss_pred hh
Q 000720 821 HR 822 (1333)
Q Consensus 821 ~~ 822 (1333)
++
T Consensus 774 qq 775 (790)
T KOG0056|consen 774 QQ 775 (790)
T ss_pred HH
Confidence 43
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-50 Score=462.44 Aligned_cols=525 Identities=21% Similarity=0.255 Sum_probs=409.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 263 TSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGA 342 (1333)
Q Consensus 263 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~ 342 (1333)
.....+.+-.+++.++..+++..+-.+...++|+.+-+.-+-+=...+.+. -..+.+..+..+++..+.+.--.+..
T Consensus 11 ~~~~~a~l~~~r~a~~~v~lfS~~INiL~L~~~lyMLQVyDRVL~S~s~~T---Lv~Ltvlal~ly~~~glLd~iR~~~l 87 (580)
T COG4618 11 KNLLAAVLAANRRAFIGVGLFSAVINLLALTGPLYMLQVYDRVLPSRSVPT---LVMLTVLALGLYAFQGLLDAIRSRVL 87 (580)
T ss_pred CchhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhccCCCcch---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777778888888899988888899999988777665433332211 22333344444555666666666778
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCC---hHHHHHHHHhhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhh
Q 000720 343 NRIGIRVRSALTVLIYKRSMAIKFAGPS---SGIIINMINVDVERIGDFFL-----YIHRIWLLPVQVFLALVILYKNLG 414 (1333)
Q Consensus 343 ~~~~~rir~~l~~~iy~K~L~ls~~~~~---~G~i~nlms~D~~~i~~~~~-----~~~~~w~~plqi~~~l~lL~~~lG 414 (1333)
.|+|.++-..|..-||.-+++.....+. ..+. -.|.+.+..|+. .+.+.--.|+=++++ |++.-.+|
T Consensus 88 ~Rig~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~----LrDL~qvR~Fltg~g~~A~fDaPW~P~yl~v~-fl~Hp~lG 162 (580)
T COG4618 88 VRIGERLDRQLNGPVFAASFSAPLLRRGSGDGLQP----LRDLDQVRQFLTGTGLTAFFDAPWMPLYLAVI-FLFHPWLG 162 (580)
T ss_pred HHHHHHHHHHhccHHHHHHHhhHHhhcCCCccccc----hhhHHHHHHHHcCCCcchhcCCchHHHHHHHH-HHHHHHHH
Confidence 8999999999999999988644433332 2233 247888887753 344554467755554 56667899
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHHHHHHHHHHH
Q 000720 415 AAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKY 494 (1333)
Q Consensus 415 ~~a~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~ 494 (1333)
+.+++|.++++.+..+|-.++++ --++-.+..-+|....+..++|..+|+.+|..+...++..+....-+.+..+.
T Consensus 163 -~~a~~ga~iLv~la~ln~~~t~~---p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~a 238 (580)
T COG4618 163 -LIALAGAIILVVLALLNERATRK---PLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERA 238 (580)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888888877777766543 34555677788899999999999999999999999888888776666655544
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000720 495 LYTCSAIAFLFWASPTL--VSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKE 572 (1333)
Q Consensus 495 ~~~~a~~~~~~~~~p~l--v~~~tF~~~~~~~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~ 572 (1333)
.........+.-..=.+ ..+...|+|..+++++|++.++..--+..-.-.|+........++..|+.|.+|++++|..
T Consensus 239 sd~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~ 318 (580)
T COG4618 239 SDRNGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAE 318 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 43333222222121122 2344567788889999999999887777777789999999999999999999999999987
Q ss_pred cCCCCCCCCCCCCCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCC
Q 000720 573 DNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRIS 651 (1333)
Q Consensus 573 ~e~~~~~~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~ 651 (1333)
....+..-..| ..+..+.++++++.-|.. ++|++++ ||++++||-++|+||+|||||||.++|.|..+|.+
T Consensus 319 ~p~~~~~m~LP--~P~g~L~Ve~l~~~PPg~------~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~ 390 (580)
T COG4618 319 LPAAAERMPLP--APQGALSVERLTAAPPGQ------KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTS 390 (580)
T ss_pred CccccCCCCCC--CCCceeeEeeeeecCCCC------CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCC
Confidence 65333222333 346789999999976653 5799999 99999999999999999999999999999999999
Q ss_pred CcEEEECC-------------eEEEEcCCCCCCCCCHHHHhc-cCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCC
Q 000720 652 GAAIKVHG-------------KKAYVPQSSWIQTGTIRENIL-FGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGER 717 (1333)
Q Consensus 652 G~~i~~~g-------------~iayv~Q~~~i~~~Tv~enI~-~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~ 717 (1333)
|.+ +++| ++||.||+--+|+|||.|||. |+.+.|.++.-+..+..+.++-+..+|+|.+|.||+.
T Consensus 391 G~V-RLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~ 469 (580)
T COG4618 391 GSV-RLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEG 469 (580)
T ss_pred CcE-EecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCC
Confidence 997 7776 589999999999999999996 6667777665556666666677888999999999999
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeE
Q 000720 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKI 797 (1333)
Q Consensus 718 g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i 797 (1333)
|..|||||||||+||||+|.||.+++||||-|+||.+-...+.+.+..-..+|.|+|+|||+++.+..+|+|++|+||++
T Consensus 470 G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~ 549 (580)
T COG4618 470 GATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRI 549 (580)
T ss_pred CCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChH
Confidence 99999999999999999999999999999999999988777776655556689999999999999999999999999999
Q ss_pred EEccChHHHHh
Q 000720 798 EQSGKYEDLIA 808 (1333)
Q Consensus 798 ~~~g~~~~l~~ 808 (1333)
...|+.+|+++
T Consensus 550 ~~FG~r~eVLa 560 (580)
T COG4618 550 AAFGPREEVLA 560 (580)
T ss_pred HhcCCHHHHHH
Confidence 99999999886
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-50 Score=505.06 Aligned_cols=433 Identities=17% Similarity=0.183 Sum_probs=345.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhcccccccchhh-HH-HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000720 896 ILLCQVLFQALQMGSNYWIAWATDEKRKVSREQ-LI-GV--FIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVF 971 (1333)
Q Consensus 896 ~ll~~~l~~~~~~~~~~wl~~~~~~~~~~~~~~-~l-~v--y~~l~~~~~i~~~~~~~~~~~~~~~~s~~L~~~ll~~il 971 (1333)
.+++.++..++.++.++.+++.+|......... +. .+ ++++.++..++.+++.++....+.+...++|.+++++++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll 97 (529)
T TIGR02868 18 AILLGALALGSAVALLGVSAWLISRAAEMPPVLYLSVAAVAVRAFGIGRAVFRYLERLVGHDAALRSLGRLRVRVYDRLA 97 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344445556666666777776654221111111 11 11 112344556677778888888999999999999999999
Q ss_pred cCccccccccCcchhHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-HHHHHHH
Q 000720 972 RAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWY-QAYYITT 1050 (1333)
Q Consensus 972 ~ap~~fFd~tp~GrIlnRfs~Di~~vd~~l~~~l~~~~~~~~~~l~~ivv~~~~~~~l~lv~ipl~~~~~~~-~~~y~~~ 1050 (1333)
+.|.+||++.++|++++|+++|++.+++.+...+..++..++.+++.++++++.+|+++++++..++++.++ ..++.+.
T Consensus 98 ~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~ 177 (529)
T TIGR02868 98 RLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLAAGLLLAGFVAPLVSLRA 177 (529)
T ss_pred ccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999988776665554443 3444555
Q ss_pred HHHHHHHHhHhhchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 1051 ARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLI 1130 (1333)
Q Consensus 1051 srel~rl~~~~~spl~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~ll~~~~~~~~~~ 1130 (1333)
.++..+......+...+++.|+++|+++||+|+.|+++.+++.+..++..+..........+......++..+...++.+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (529)
T TIGR02868 178 ARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAAQLLAAGLAVLGALW 257 (529)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666777889999999999999999999999999999999999888887777666666555555555444333333
Q ss_pred HHH-hccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCcccCCCCCCCCCCCcccEE
Q 000720 1131 ILV-TLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIE 1209 (1333)
Q Consensus 1131 ~~~-~~~~~~~~~g~~gl~l~y~l~l~~~l~~~v~~~~~le~~~~SveRI~~~~~~p~E~~~~~~~~~~~~~wp~~G~I~ 1209 (1333)
++. ....+.+++|.+..++.|...+...+..+...+.++.+...|.+|+.++++.|+|.+.. +...+...+|..++|+
T Consensus 258 ~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~-~~~~~~~~~~~~~~I~ 336 (529)
T TIGR02868 258 AGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEG-VVPAAGALGLGKPTLE 336 (529)
T ss_pred HHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCC-CCCCCcccCCCCceEE
Confidence 322 23456788888888888888888888888888999999999999999999877653321 1111112344567899
Q ss_pred EEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeEec
Q 000720 1210 LENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIP 1289 (1333)
Q Consensus 1210 f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isiVp 1289 (1333)
|+||+|+|+++. ++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|.+||+||+++ .+++|++|++||
T Consensus 337 ~~~vsf~Y~~~~-~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V~ 414 (529)
T TIGR02868 337 LRDLSFGYPGSP-PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELRRRISVFA 414 (529)
T ss_pred EEEEEEecCCCC-ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHHhheEEEc
Confidence 999999997654 499999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred ccccccccchhhhcCCC-CCCCHHHHHHHHHhCCCCcccccCC
Q 000720 1290 QDPMLFQGTVRTNLDPL-EQHSDQEIWEVKISKLLTHKSYQCE 1331 (1333)
Q Consensus 1290 Qdp~LF~GTIR~NLdp~-~~~sDeeI~~aL~~~~L~~~~~~~~ 1331 (1333)
|||+||+|||||||..+ ++++|||+++|+++|++.+.+.+.|
T Consensus 415 Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp 457 (529)
T TIGR02868 415 QDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLP 457 (529)
T ss_pred cCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCc
Confidence 99999999999999986 4689999999999999998766554
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-50 Score=514.54 Aligned_cols=432 Identities=19% Similarity=0.219 Sum_probs=354.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhccccc-ccc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 895 VILLCQVLFQALQMGSNYWIAWATDEKR-KVS---REQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSV 970 (1333)
Q Consensus 895 ~~ll~~~l~~~~~~~~~~wl~~~~~~~~-~~~---~~~~l~vy~~l~~~~~i~~~~~~~~~~~~~~~~s~~L~~~ll~~i 970 (1333)
..+++.++.....+..+++.+...|.-. ..+ ....+.+++++.++..++.+++..++.+.+.+...++|+++++++
T Consensus 165 ~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~l~~~l 244 (711)
T TIGR00958 165 SAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINLRIREDLFRSL 244 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444556667777777887776554211 111 122344455566667788888889999999999999999999999
Q ss_pred hcCccccccccCcchhHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 971 FRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITT 1050 (1333)
Q Consensus 971 l~ap~~fFd~tp~GrIlnRfs~Di~~vd~~l~~~l~~~~~~~~~~l~~ivv~~~~~~~l~lv~ipl~~~~~~~~~~y~~~ 1050 (1333)
+++|++||+++++|+++||+++|++.+++.+...+..++..++.+++.+++++..+|++.++++..+++..++..++.+.
T Consensus 245 l~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l~~~~l~~~~~~~~~~~ 324 (711)
T TIGR00958 245 LRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKR 324 (711)
T ss_pred HcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888777777777777788888
Q ss_pred HHHHHHHHhHhhchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 1051 ARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLI 1130 (1333)
Q Consensus 1051 srel~rl~~~~~spl~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~ll~~~~~~~~~~ 1130 (1333)
.++..+...+..+...+++.|+++|+.+||+|+.|+++.+++.+..++..+.................++..+...++..
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 404 (711)
T TIGR00958 325 YQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLY 404 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888999999999999999999999999999999999887766554433333322223333222222222
Q ss_pred HH-HhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCcccCCCCCCCCCCCcccEE
Q 000720 1131 IL-VTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIE 1209 (1333)
Q Consensus 1131 ~~-~~~~~~~~~~g~~gl~l~y~l~l~~~l~~~v~~~~~le~~~~SveRI~~~~~~p~E~~~~~~~~~~~~~wp~~G~I~ 1209 (1333)
++ .....+.+++|.+..++.|...+...+..+...+.++++...+.+|+.++++.+++.+.. . ....++..|.|+
T Consensus 405 ~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~--~--~~~~~~~~~~I~ 480 (711)
T TIGR00958 405 YGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLT--G--TLAPLNLEGLIE 480 (711)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC--C--CCCCCCCCCeEE
Confidence 22 223467788998888899999999999999999999999999999999999876654321 1 112234578999
Q ss_pred EEEEEEEECCC-CCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeEe
Q 000720 1210 LENLLVQYNPT-LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSII 1288 (1333)
Q Consensus 1210 f~nVsf~Y~~~-~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isiV 1288 (1333)
|+||+|+|+.+ .++||+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|++||+|+++++.+++|++|++|
T Consensus 481 ~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v 560 (711)
T TIGR00958 481 FQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALV 560 (711)
T ss_pred EEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEE
Confidence 99999999643 24699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccchhhhcCCC-CCCCHHHHHHHHHhCCCCcccccC
Q 000720 1289 PQDPMLFQGTVRTNLDPL-EQHSDQEIWEVKISKLLTHKSYQC 1330 (1333)
Q Consensus 1289 pQdp~LF~GTIR~NLdp~-~~~sDeeI~~aL~~~~L~~~~~~~ 1330 (1333)
||||++|+|||||||..+ ++++|||+++|++++++.+...+.
T Consensus 561 ~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~l 603 (711)
T TIGR00958 561 GQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEF 603 (711)
T ss_pred ecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhC
Confidence 999999999999999865 568999999999999998766544
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-49 Score=497.67 Aligned_cols=429 Identities=24% Similarity=0.317 Sum_probs=355.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHhccccc-c-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 000720 897 LLCQVLFQALQMGSNYWIAWATDEKR-K-VSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAP 974 (1333)
Q Consensus 897 ll~~~l~~~~~~~~~~wl~~~~~~~~-~-~~~~~~l~vy~~l~~~~~i~~~~~~~~~~~~~~~~s~~L~~~ll~~il~ap 974 (1333)
+++.++...+....++++.+..+... . .....+...++++.++..++.+...++..+.+.+...++|.++++++++.|
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~ 99 (567)
T COG1132 20 ILLLLLSALLSLLLPLLIGRIIDALLADLGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLP 99 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33445556666667777665543222 1 112234444555555667777777788888889999999999999999999
Q ss_pred cccccccCcchhHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 975 ISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTAREL 1054 (1333)
Q Consensus 975 ~~fFd~tp~GrIlnRfs~Di~~vd~~l~~~l~~~~~~~~~~l~~ivv~~~~~~~l~lv~ipl~~~~~~~~~~y~~~srel 1054 (1333)
++||+++++|++++|+++|++.++..+......+...++.+++.+++++..+|.+.++++...+++.+...++.++.++.
T Consensus 100 ~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 179 (567)
T COG1132 100 LSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKL 179 (567)
T ss_pred HHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998866666678899999999999999999888887777777777787777899
Q ss_pred HHHHhHhhchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 000720 1055 ARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILV- 1133 (1333)
Q Consensus 1055 ~rl~~~~~spl~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~ll~~~~~~~~~~~~~- 1133 (1333)
.+......+.+.+.+.|+++|+++||+|+.++...+++.+..+...+...........+.....++..+....+..++.
T Consensus 180 ~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (567)
T COG1132 180 SRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLALGGF 259 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988888887777666666666655555555554444333322
Q ss_pred hccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCcccCCCCCCCCCCCcccEEEEEE
Q 000720 1134 TLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENL 1213 (1333)
Q Consensus 1134 ~~~~~~~~~g~~gl~l~y~l~l~~~l~~~v~~~~~le~~~~SveRI~~~~~~p~E~~~~~~~~~~~~~wp~~G~I~f~nV 1213 (1333)
....+.++.|....++.|...+...+..+...+..++....|.||+.++++.+++... ... +..+..|+|+|+||
T Consensus 260 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~---~~~--~~~~~~~~I~f~~v 334 (567)
T COG1132 260 LVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVED---PPD--PLKDTIGSIEFENV 334 (567)
T ss_pred HHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC---CCC--CCCCCCCeEEEEEE
Confidence 2344557888888999999999999999999999999999999999999987654221 111 13455789999999
Q ss_pred EEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeEeccccc
Q 000720 1214 LVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPM 1293 (1333)
Q Consensus 1214 sf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isiVpQdp~ 1293 (1333)
+|+|+++. +||+|+||+|+|||++||||||||||||++++|+|+|||++|+|+|||+||+++++++||++|++|||||+
T Consensus 335 sf~y~~~~-~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~ 413 (567)
T COG1132 335 SFSYPGKK-PVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPL 413 (567)
T ss_pred EEEcCCCC-ccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccce
Confidence 99998644 59999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhcCCCCC-CCHHHHHHHHHhCCCCcccccCC
Q 000720 1294 LFQGTVRTNLDPLEQ-HSDQEIWEVKISKLLTHKSYQCE 1331 (1333)
Q Consensus 1294 LF~GTIR~NLdp~~~-~sDeeI~~aL~~~~L~~~~~~~~ 1331 (1333)
||+||||+||+++++ +|||||++|++++++.|...+.|
T Consensus 414 LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp 452 (567)
T COG1132 414 LFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLP 452 (567)
T ss_pred eecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCc
Confidence 999999999999865 89999999999999998766654
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-49 Score=503.36 Aligned_cols=431 Identities=18% Similarity=0.175 Sum_probs=355.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhccccc-ccch---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 895 VILLCQVLFQALQMGSNYWIAWATDEKR-KVSR---EQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSV 970 (1333)
Q Consensus 895 ~~ll~~~l~~~~~~~~~~wl~~~~~~~~-~~~~---~~~l~vy~~l~~~~~i~~~~~~~~~~~~~~~~s~~L~~~ll~~i 970 (1333)
..+++.++...+.++.++.++...|... ..+. ..+..+++++.++..++.+++.++....+.+...+++.++++++
T Consensus 140 ~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 219 (686)
T TIGR03797 140 AILAMGLLGTLLGMLVPIATGILIGTAIPDADRSLLVQIALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVWDRL 219 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666677777777766554221 1111 22334455556667788888999999999999999999999999
Q ss_pred hcCccccccccCcchhHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 971 FRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITT 1050 (1333)
Q Consensus 971 l~ap~~fFd~tp~GrIlnRfs~Di~~vd~~l~~~l~~~~~~~~~~l~~ivv~~~~~~~l~lv~ipl~~~~~~~~~~y~~~ 1050 (1333)
++.|++||++.++|++++|++ |++.+++.+...+...+...+..++.+++++..+|+++++++.++++++.+..++.+.
T Consensus 220 l~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~ 298 (686)
T TIGR03797 220 LRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVLGLL 298 (686)
T ss_pred HcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999997 8999999998888787777777888888899999999888777666666666666666
Q ss_pred HHHHHHHHhHhhchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 1051 ARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLI 1130 (1333)
Q Consensus 1051 srel~rl~~~~~spl~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~ll~~~~~~~~~~ 1130 (1333)
.+...+......+...+++.|+++|+.|||+|+.|+++.+++.+..++..+..+.....+.|......++..+...++.+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~ 378 (686)
T TIGR03797 299 QVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFA 378 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666667778899999999999999999999999999999999999988888888888877777666554444433
Q ss_pred HHHh-ccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCcccCCCCCCCCCCCcccEE
Q 000720 1131 ILVT-LPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIE 1209 (1333)
Q Consensus 1131 ~~~~-~~~~~~~~g~~gl~l~y~l~l~~~l~~~v~~~~~le~~~~SveRI~~~~~~p~E~~~~~~~~~~~~~wp~~G~I~ 1209 (1333)
++.. ...+.++.|.+-.+..+...+..++..+...+.+++....+.+|+.++++.|+|.+. +..+ ..+..|.|+
T Consensus 379 ~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~---~~~~--~~~~~~~I~ 453 (686)
T TIGR03797 379 AAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDE---AKTD--PGKLSGAIE 453 (686)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc---CcCC--CCCCCceEE
Confidence 3332 345678888877778888888888888999999999999999999999987766431 1111 123457899
Q ss_pred EEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeEec
Q 000720 1210 LENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIP 1289 (1333)
Q Consensus 1210 f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isiVp 1289 (1333)
|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|+|||+|+++++.+++|++|++||
T Consensus 454 ~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~ 533 (686)
T TIGR03797 454 VDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVL 533 (686)
T ss_pred EEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEc
Confidence 99999999766667999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccchhhhcCCCCCCCHHHHHHHHHhCCCCcccccCC
Q 000720 1290 QDPMLFQGTVRTNLDPLEQHSDQEIWEVKISKLLTHKSYQCE 1331 (1333)
Q Consensus 1290 Qdp~LF~GTIR~NLdp~~~~sDeeI~~aL~~~~L~~~~~~~~ 1331 (1333)
|||.||+|||||||..+++++|||+|+|++.+++.+.+.+.|
T Consensus 534 Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp 575 (686)
T TIGR03797 534 QNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMP 575 (686)
T ss_pred cCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhcc
Confidence 999999999999999877799999999999999998766544
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-49 Score=496.54 Aligned_cols=446 Identities=15% Similarity=0.142 Sum_probs=345.4
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHhhHHHHHHhcccc--cccc---hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 879 VYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEK--RKVS---REQLIGVFIFLSGGSSFFILGRAVLLAT 953 (1333)
Q Consensus 879 ~y~~y~~~~~~~~~~~~~ll~~~l~~~~~~~~~~wl~~~~~~~--~~~~---~~~~l~vy~~l~~~~~i~~~~~~~~~~~ 953 (1333)
.++.|++...+ .+.+.+++.++..++....++.+++..|.. +..+ ...++.+++++.++..++.+.+.++...
T Consensus 12 ~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (588)
T PRK11174 12 WLKQQSKPAKR--WLNLSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVGFK 89 (588)
T ss_pred HHHHHhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555554322 222334444556666666777666555421 1111 1223344555556677778888888899
Q ss_pred HHHHHHHHHHHHHHHHHhcCccccccccCcchhHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 000720 954 IAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLF 1033 (1333)
Q Consensus 954 ~~~~~s~~L~~~ll~~il~ap~~fFd~tp~GrIlnRfs~Di~~vd~~l~~~l~~~~~~~~~~l~~ivv~~~~~~~l~lv~ 1033 (1333)
.+.+...++|.++++++++.|++||++.++|++++|+++|++.+++.+...+..++..++..++.++++++.+|++++++
T Consensus 90 ~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~ 169 (588)
T PRK11174 90 AGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLIL 169 (588)
T ss_pred HHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 1034 LVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWL 1113 (1333)
Q Consensus 1034 ipl~~~~~~~~~~y~~~srel~rl~~~~~spl~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl 1113 (1333)
+.++++..++..++.+..++..+......+...+++.|+++|+.+||+|++|+++.+++.+..++..+..........+.
T Consensus 170 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (588)
T PRK11174 170 LGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLS 249 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777788888778888999999999999999999999999999999999998888777666655555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCChHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhc
Q 000720 1114 CLRINLLFNFAFFLVLIILVTLPRSAIDPSLA---------GLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTN 1184 (1333)
Q Consensus 1114 ~~rl~ll~~~~~~~~~~~~~~~~~~~~~~g~~---------gl~l~y~l~l~~~l~~~v~~~~~le~~~~SveRI~~~~~ 1184 (1333)
.....++..+...++++++.....+.++.|.. -+++.++..+..++..+...+.++.....|.+|+.++++
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~ 329 (588)
T PRK11174 250 SAVLEFFASISIALVAVYFGFSYLGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFLE 329 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 55555554443322222211111233333321 122244455566777777888889999999999999998
Q ss_pred CCCCCCcccCCCCCCCCCCCcccEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCC
Q 000720 1185 IPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGG 1264 (1333)
Q Consensus 1185 ~p~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G 1264 (1333)
.|++++. ++..+ ...+..++|+|+||+|.|.++ ++||+|+||+|+|||++||||+||||||||+++|.|+| |++|
T Consensus 330 ~~~~~~~--~~~~~-~~~~~~~~i~~~~vsf~~~~~-~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G 404 (588)
T PRK11174 330 TPLAHPQ--QGEKE-LASNDPVTIEAEDLEILSPDG-KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQG 404 (588)
T ss_pred CCCcccC--CCccc-cCCCCCceEEEEeeEEeccCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCc
Confidence 7765321 11111 111234689999999988665 45999999999999999999999999999999999999 9999
Q ss_pred eEEEcCEeCCCCChHHHhhcCeEecccccccccchhhhcCCC-CCCCHHHHHHHHHhCCCCcccccCC
Q 000720 1265 RILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPL-EQHSDQEIWEVKISKLLTHKSYQCE 1331 (1333)
Q Consensus 1265 ~I~IDGvdI~~i~l~~LRs~isiVpQdp~LF~GTIR~NLdp~-~~~sDeeI~~aL~~~~L~~~~~~~~ 1331 (1333)
+|++||+|+++++.+++|++|++|||||+||+|||||||..+ ++++|||+++|+++|++.+.+.+.|
T Consensus 405 ~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp 472 (588)
T PRK11174 405 SLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLP 472 (588)
T ss_pred EEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcc
Confidence 999999999999999999999999999999999999999987 4699999999999999988766553
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-49 Score=506.76 Aligned_cols=448 Identities=18% Similarity=0.205 Sum_probs=359.5
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhHHHHHHhccccc-ccch---hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 877 WTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKR-KVSR---EQLIGVFIFLSGGSSFFILGRAVLLA 952 (1333)
Q Consensus 877 ~~~y~~y~~~~~~~~~~~~~ll~~~l~~~~~~~~~~wl~~~~~~~~-~~~~---~~~l~vy~~l~~~~~i~~~~~~~~~~ 952 (1333)
+..++.|++...+ .+..++++.++..++.++.+++++...|... .... ..+..+++++.++..++.+++.++..
T Consensus 144 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (708)
T TIGR01193 144 LLKFIPLITRQKK--LIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMMGTLGIISIGLIIAYIIQQILSYIQIFLLN 221 (708)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666654322 2233444556667777788888887665321 1111 12233344455566778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCccccccccCcchhHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 000720 953 TIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPL 1032 (1333)
Q Consensus 953 ~~~~~~s~~L~~~ll~~il~ap~~fFd~tp~GrIlnRfs~Di~~vd~~l~~~l~~~~~~~~~~l~~ivv~~~~~~~l~lv 1032 (1333)
..+.+...+++.++++++++.|++||+++++|++++|++ |...+.+.+...+...+..++.+++.++++++.+|+++++
T Consensus 222 ~~~~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li 300 (708)
T TIGR01193 222 VLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLL 300 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 999999999999999999999999999999999999998 8999988888777777777778888888889999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 1033 FLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEW 1112 (1333)
Q Consensus 1033 ~ipl~~~~~~~~~~y~~~srel~rl~~~~~spl~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~w 1112 (1333)
++..++++..+...+.+..++..+......+...+++.|+++|+.|||+|+.|+++.+++.+..++..+..+.......+
T Consensus 301 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (708)
T TIGR01193 301 SLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQG 380 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777778888888888888899999999999999999999999999999999988888777766555555
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCc
Q 000720 1113 LCLRINLLFNFAFFLVLIIL-VTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPL 1191 (1333)
Q Consensus 1113 l~~rl~ll~~~~~~~~~~~~-~~~~~~~~~~g~~gl~l~y~l~l~~~l~~~v~~~~~le~~~~SveRI~~~~~~p~E~~~ 1191 (1333)
......++..+...++++++ .....+.+++|.+..+..+...+..++..+...+.+++....+++|+.++++.|+|.+.
T Consensus 381 ~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~ 460 (708)
T TIGR01193 381 QQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFIN 460 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccc
Confidence 44444444333322222222 22346778898888888888888889999999999999999999999999988877532
Q ss_pred ccCCCCCCCCCCCcccEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCE
Q 000720 1192 VIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGV 1271 (1333)
Q Consensus 1192 ~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGv 1271 (1333)
. ......++..|.|+|+||+|+|+++ +++|+|+||+|+|||+|||||+||||||||+++|.|+|+|++|+|+|||+
T Consensus 461 ~---~~~~~~~~~~~~I~~~~vsf~y~~~-~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~ 536 (708)
T TIGR01193 461 K---KKRTELNNLNGDIVINDVSYSYGYG-SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGF 536 (708)
T ss_pred c---ccccCCCCCCCcEEEEEEEEEcCCC-CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCE
Confidence 1 1112234557899999999999754 45999999999999999999999999999999999999999999999999
Q ss_pred eCCCCChHHHhhcCeEecccccccccchhhhcCCC--CCCCHHHHHHHHHhCCCCcccccCC
Q 000720 1272 DISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPL--EQHSDQEIWEVKISKLLTHKSYQCE 1331 (1333)
Q Consensus 1272 dI~~i~l~~LRs~isiVpQdp~LF~GTIR~NLdp~--~~~sDeeI~~aL~~~~L~~~~~~~~ 1331 (1333)
|+++++.+++|++|++|||||+||+|||||||..+ .+++|||+++|++++++.+.+.+.|
T Consensus 537 ~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp 598 (708)
T TIGR01193 537 SLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMP 598 (708)
T ss_pred EHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcc
Confidence 99999999999999999999999999999999876 4689999999999999987665543
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-48 Score=488.59 Aligned_cols=502 Identities=17% Similarity=0.167 Sum_probs=363.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 276 SLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTV 355 (1333)
Q Consensus 276 ~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~rir~~l~~ 355 (1333)
.++...++.++.+.+....|++...+++.+.+.+...-....+.+++.+++.. +......|...++..++|..+..
T Consensus 97 ~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~----~~~~~~~~~~~~~~~~~r~~l~~ 172 (659)
T TIGR00954 97 LLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPAS----FINSAIKYLLKELKLRFRVRLTR 172 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677778888888999999999999987754321000010111222222222 33333444466667777777777
Q ss_pred HHHHHHhcccc------CCCChHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 000720 356 LIYKRSMAIKF------AGPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFV 428 (1333)
Q Consensus 356 ~iy~K~L~ls~------~~~~~G~i~nlms~D~~~i~~~~~-~~~~~w~~plqi~~~l~lL~~~lG~~a~l~gl~~~~~~ 428 (1333)
.++++.+.--. .+..+|++.+.+++|++.+.+... .+..+...++.++.+++.|+..++|..++..++.+++.
T Consensus 173 ~l~~~~~~~~~~~~~~~~d~~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l~ 252 (659)
T TIGR00954 173 YLYSKYLSGFTFYKVSNLDSRIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFAT 252 (659)
T ss_pred HHHHHHhCCCceEEeccCCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 77766654311 112479999999999999988764 45566667778887888888778844555555556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 429 MVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWAS 508 (1333)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~a~~~~~~~~~ 508 (1333)
+.+...+.+...+..++..+..++-....+|.++|+++||+|+-|+...++..+.=++-.+..++.....+....+....
T Consensus 253 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i 332 (659)
T TIGR00954 253 GVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIV 332 (659)
T ss_pred HHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 66777788888888888888888889999999999999999999998877776643333333333333333322222211
Q ss_pred H----HHHHHHHHHHHHHh--c---CCCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 000720 509 P----TLVSVITFGVCILL--K---TPLTSGAVLSA----LATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQ 575 (1333)
Q Consensus 509 p----~lv~~~tF~~~~~~--~---~~Lt~~~vft~----lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~ 575 (1333)
. ..+..+..+..++. | +.+|.+..+.. ..++..+..|+..+...+..+.+++++.+||.++++.+++
T Consensus 333 ~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~ 412 (659)
T TIGR00954 333 AKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDD 412 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11212222232332 1 56887765442 3346677899999999999999999999999999975431
Q ss_pred -C-----CC-CCC-----------------CCCCCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEEC
Q 000720 576 -K-----KP-ITE-----------------PTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCG 630 (1333)
Q Consensus 576 -~-----~~-~~~-----------------~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG 630 (1333)
. +. ... .........|+++|++|+|+++ .+.+++ |+++++||+++|+|
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~-------~~il~~isl~i~~Ge~~~IvG 485 (659)
T TIGR00954 413 VKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG-------DVLIESLSFEVPSGNHLLICG 485 (659)
T ss_pred HhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC-------CeeeecceEEECCCCEEEEEC
Confidence 0 00 000 0000123469999999999743 368999 99999999999999
Q ss_pred CCCCChhHHHHHHhCCCcCCCCcEEEEC--CeEEEEcCCCCCCCCCHHHHhccCCc--------CCHHHHHHHHHHcccc
Q 000720 631 SVGSGKSSLLSSILGEIPRISGAAIKVH--GKKAYVPQSSWIQTGTIRENILFGKD--------MRQSFYEEVLEGCALN 700 (1333)
Q Consensus 631 ~~GsGKSTLl~~ilG~~~~~~G~~i~~~--g~iayv~Q~~~i~~~Tv~enI~~g~~--------~~~~~~~~v~~~~~l~ 700 (1333)
|||||||||+++|+|+++|.+|++ .++ .+++|+||+|+++++|++|||.++.. ..++..+++++.+++.
T Consensus 486 ~nGsGKSTLl~lL~Gl~~~~~G~i-~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~ 564 (659)
T TIGR00954 486 PNGCGKSSLFRILGELWPVYGGRL-TKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLT 564 (659)
T ss_pred CCCCCHHHHHHHHhCCCCCCCCeE-eecCCCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCH
Confidence 999999999999999999999986 554 46999999999999999999998742 2344556778888887
Q ss_pred hHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCch
Q 000720 701 QDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQL 780 (1333)
Q Consensus 701 ~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~ 780 (1333)
+.++. +.|.+|..+ .+.+||||||||++||||++++|+++|||||||+||+++.+.+.+.+ +. .++|+|++||++
T Consensus 565 ~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l-~~--~~~tvI~isH~~ 639 (659)
T TIGR00954 565 HILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLC-RE--FGITLFSVSHRK 639 (659)
T ss_pred HHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHH-HH--cCCEEEEEeCch
Confidence 66655 778888765 57899999999999999999999999999999999999988776643 32 389999999999
Q ss_pred hhhhcCCEEEEEeC
Q 000720 781 EFLDAADLVLVMKD 794 (1333)
Q Consensus 781 ~~l~~aD~i~vl~~ 794 (1333)
+.++.||++++|++
T Consensus 640 ~~~~~~d~il~l~~ 653 (659)
T TIGR00954 640 SLWKYHEYLLYMDG 653 (659)
T ss_pred HHHHhCCEEEEEeC
Confidence 99999999999973
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-48 Score=502.40 Aligned_cols=452 Identities=16% Similarity=0.151 Sum_probs=367.3
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhHHHHHHhccccc-ccc---hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 877 WTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKR-KVS---REQLIGVFIFLSGGSSFFILGRAVLLA 952 (1333)
Q Consensus 877 ~~~y~~y~~~~~~~~~~~~~ll~~~l~~~~~~~~~~wl~~~~~~~~-~~~---~~~~l~vy~~l~~~~~i~~~~~~~~~~ 952 (1333)
++.++.+++... ......+++.++..++.++.++.++...|... ... ...+...++++.++..++.+++.++..
T Consensus 142 ~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (710)
T TIGR03796 142 LRALWRRLRGSR--GALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGRQDWLRPLLLGMGLTALLQGVLTWLQLYYLR 219 (710)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555322 12223444455666667777777776554211 111 122334455556667788888999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCccccccccCcchhHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 000720 953 TIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPL 1032 (1333)
Q Consensus 953 ~~~~~~s~~L~~~ll~~il~ap~~fFd~tp~GrIlnRfs~Di~~vd~~l~~~l~~~~~~~~~~l~~ivv~~~~~~~l~lv 1032 (1333)
..+.+...+++.++++++++.|++||++.++|++++|+++| ..+.+.+...+..++..++.+++.+++++..+|+++++
T Consensus 220 ~~~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li 298 (710)
T TIGR03796 220 RLQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLI 298 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998 67888888888888889999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 1033 FLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEW 1112 (1333)
Q Consensus 1033 ~ipl~~~~~~~~~~y~~~srel~rl~~~~~spl~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~w 1112 (1333)
.+.+++++.++..++.+..++..+......+...+++.|+++|+.+||+++.|+.+.+++.+..++..+..........+
T Consensus 299 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (710)
T TIGR03796 299 GIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQI 378 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777777777777777777777777788889999999999999999999999999999999998888888777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-hccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCc
Q 000720 1113 LCLRINLLFNFAFFLVLIILV-TLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPL 1191 (1333)
Q Consensus 1113 l~~rl~ll~~~~~~~~~~~~~-~~~~~~~~~g~~gl~l~y~l~l~~~l~~~v~~~~~le~~~~SveRI~~~~~~p~E~~~ 1191 (1333)
......++..+...+++++++ ....+.++.|.+..+..+...+..++..+...+.++.....+++|+.++++.|+|.+.
T Consensus 379 ~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~ 458 (710)
T TIGR03796 379 LGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLL 458 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccc
Confidence 777666666554444433332 2345778888888888888888888999999999999999999999999988776532
Q ss_pred ccCC--C-CCCCCCCCcccEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEE
Q 000720 1192 VIKN--S-RPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILI 1268 (1333)
Q Consensus 1192 ~~~~--~-~~~~~wp~~G~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~I 1268 (1333)
.... . ...+.++..|.|+|+||+|+|+++.+++|+|+||+|+|||+|||||+||||||||+++|.|+|+|++|+|.+
T Consensus 459 ~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~i 538 (710)
T TIGR03796 459 EEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILF 538 (710)
T ss_pred ccccccccccccCCCCCCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 1100 0 011113456899999999999876667999999999999999999999999999999999999999999999
Q ss_pred cCEeCCCCChHHHhhcCeEecccccccccchhhhcCCCC-CCCHHHHHHHHHhCCCCcccccCC
Q 000720 1269 DGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLE-QHSDQEIWEVKISKLLTHKSYQCE 1331 (1333)
Q Consensus 1269 DGvdI~~i~l~~LRs~isiVpQdp~LF~GTIR~NLdp~~-~~sDeeI~~aL~~~~L~~~~~~~~ 1331 (1333)
||+|+++++.+++|++|++|||||+||+|||||||..++ +++|+++++|++++++.+.+.+.|
T Consensus 539 dg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp 602 (710)
T TIGR03796 539 DGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRP 602 (710)
T ss_pred CCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCc
Confidence 999999999999999999999999999999999998764 689999999999999988766543
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-48 Score=490.07 Aligned_cols=429 Identities=20% Similarity=0.268 Sum_probs=342.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhccccc-ccc--hhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 896 ILLCQVLFQALQMGSNYWIAWATDEKR-KVS--REQ---LIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITS 969 (1333)
Q Consensus 896 ~ll~~~l~~~~~~~~~~wl~~~~~~~~-~~~--~~~---~l~vy~~l~~~~~i~~~~~~~~~~~~~~~~s~~L~~~ll~~ 969 (1333)
.+++.++...+....++++.+..|... ..+ ... ++.+++++.++..++.+.+.++....+.+...++|.+++++
T Consensus 28 ~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ 107 (592)
T PRK10790 28 AVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDVMDA 107 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666677777777776664221 111 111 12224444455666777888888899999999999999999
Q ss_pred HhcCccccccccCcchhHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 000720 970 VFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYIT 1049 (1333)
Q Consensus 970 il~ap~~fFd~tp~GrIlnRfs~Di~~vd~~l~~~l~~~~~~~~~~l~~ivv~~~~~~~l~lv~ipl~~~~~~~~~~y~~ 1049 (1333)
++++|++||++.++|++++|+++|++.+++.+...+..++..++.+++.++++++.+|++.++++..+++...+...+.+
T Consensus 108 l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~i~~~~~~~~~~ 187 (592)
T PRK10790 108 ALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMIFPAVLVVMVIYQR 187 (592)
T ss_pred HHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999887665555544444555555
Q ss_pred HHHHHHHHHhHhhchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 000720 1050 TARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWL-CLRINLLFNFAFFLV 1128 (1333)
Q Consensus 1050 ~srel~rl~~~~~spl~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl-~~rl~ll~~~~~~~~ 1128 (1333)
..+...+......+...+++.|+++|+.+||+|+.|+++.+++.+..++..+..+.......+. .....++..+...++
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (592)
T PRK10790 188 YSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSALILCGL 267 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666677888999999999999999999999999999988887777665554444332 233334333322222
Q ss_pred HHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCcccCCCCCCCCCCCcccE
Q 000720 1129 LIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKI 1208 (1333)
Q Consensus 1129 ~~~~~~~~~~~~~~g~~gl~l~y~l~l~~~l~~~v~~~~~le~~~~SveRI~~~~~~p~E~~~~~~~~~~~~~wp~~G~I 1208 (1333)
.+.......+.++.|.+..++.|...+..++..+...+.++++...|.+|+.++++.+++++. .. ..++..|+|
T Consensus 268 ~~~~~~~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~---~~---~~~~~~~~i 341 (592)
T PRK10790 268 LMLFGFSASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYG---ND---DRPLQSGRI 341 (592)
T ss_pred HHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCC---CC---ccCCCCCeE
Confidence 222222346678888888888899999999999999999999999999999999986654321 11 123345789
Q ss_pred EEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeEe
Q 000720 1209 ELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSII 1288 (1333)
Q Consensus 1209 ~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isiV 1288 (1333)
+|+||+|+|+++ +++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|.+||+|+++++.+++|++|++|
T Consensus 342 ~~~~v~f~y~~~-~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v 420 (592)
T PRK10790 342 DIDNVSFAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMV 420 (592)
T ss_pred EEEEEEEEeCCC-CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEE
Confidence 999999999754 4599999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccchhhhcCCCCCCCHHHHHHHHHhCCCCcccccCC
Q 000720 1289 PQDPMLFQGTVRTNLDPLEQHSDQEIWEVKISKLLTHKSYQCE 1331 (1333)
Q Consensus 1289 pQdp~LF~GTIR~NLdp~~~~sDeeI~~aL~~~~L~~~~~~~~ 1331 (1333)
||||+||+||||+||.++++++|+|+++|++++|+.+.+...|
T Consensus 421 ~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp 463 (592)
T PRK10790 421 QQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLP 463 (592)
T ss_pred ccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhcc
Confidence 9999999999999999988899999999999999998766543
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-48 Score=495.31 Aligned_cols=448 Identities=18% Similarity=0.170 Sum_probs=360.4
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhHHHHHHhcccc-cccch---hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 877 WTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEK-RKVSR---EQLIGVFIFLSGGSSFFILGRAVLLA 952 (1333)
Q Consensus 877 ~~~y~~y~~~~~~~~~~~~~ll~~~l~~~~~~~~~~wl~~~~~~~-~~~~~---~~~l~vy~~l~~~~~i~~~~~~~~~~ 952 (1333)
+..++.+++.. +..+...+++.++..++..+.++.++...|.. +..+. ..+..+++++.++..++.+++.++..
T Consensus 135 ~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (694)
T TIGR03375 135 KHWFWSTLKES--WPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQAFETLWVLAIGVALAIVFDFVLKTLRSYFLD 212 (694)
T ss_pred chHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345555432 22223344455666667777787777666432 11111 12223344445566778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCccccccccCcchhHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 000720 953 TIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPL 1032 (1333)
Q Consensus 953 ~~~~~~s~~L~~~ll~~il~ap~~fFd~tp~GrIlnRfs~Di~~vd~~l~~~l~~~~~~~~~~l~~ivv~~~~~~~l~lv 1032 (1333)
..+.+...+++.++++++++.|++| ++.++|++++|+ +|++.+.+.+...+...+..++.+++.++++++.+|+++++
T Consensus 213 ~~~~~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li 290 (694)
T TIGR03375 213 VAGKKADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWV 290 (694)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999999999999998 788999999999 79999999999888888888888888888899999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 1033 FLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEW 1112 (1333)
Q Consensus 1033 ~ipl~~~~~~~~~~y~~~srel~rl~~~~~spl~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~w 1112 (1333)
.+..++++..+..++.+..++..+......+...+++.|+++|+.+||+|+.|+++.+++.+..++..+..+.....+.+
T Consensus 291 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (694)
T TIGR03375 291 PLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNL 370 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777888889999999999999999999999999999999999888887777666666
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCc
Q 000720 1113 LCLRINLLFNFAFFLVLIIL-VTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPL 1191 (1333)
Q Consensus 1113 l~~rl~ll~~~~~~~~~~~~-~~~~~~~~~~g~~gl~l~y~l~l~~~l~~~v~~~~~le~~~~SveRI~~~~~~p~E~~~ 1191 (1333)
......++..+...++++++ .....+.+++|.+-.++++...+..++..+...+.+++....+++|+.++++.|+|.+.
T Consensus 371 ~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~ 450 (694)
T TIGR03375 371 ATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPE 450 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 66555555544333333332 22345678888888888888888888999999999999999999999999988776432
Q ss_pred ccCCCCCCCCCCCcccEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCE
Q 000720 1192 VIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGV 1271 (1333)
Q Consensus 1192 ~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGv 1271 (1333)
+.......+..|.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|.+||+
T Consensus 451 ---~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~ 527 (694)
T TIGR03375 451 ---GTRFLHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGV 527 (694)
T ss_pred ---CCCCCCCCCccceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE
Confidence 11111112346789999999999765567999999999999999999999999999999999999999999999999
Q ss_pred eCCCCChHHHhhcCeEecccccccccchhhhcCCCC-CCCHHHHHHHHHhCCCCcccccCC
Q 000720 1272 DISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLE-QHSDQEIWEVKISKLLTHKSYQCE 1331 (1333)
Q Consensus 1272 dI~~i~l~~LRs~isiVpQdp~LF~GTIR~NLdp~~-~~sDeeI~~aL~~~~L~~~~~~~~ 1331 (1333)
|+++++++++|++|++|||||++|+|||||||..++ +++|||+++|++++++.+...++|
T Consensus 528 ~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp 588 (694)
T TIGR03375 528 DIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHP 588 (694)
T ss_pred EhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCc
Confidence 999999999999999999999999999999999875 489999999999999988776654
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-47 Score=479.74 Aligned_cols=430 Identities=18% Similarity=0.173 Sum_probs=339.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhcccc--ccc----chhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 896 ILLCQVLFQALQMGSNYWIAWATDEK--RKV----SREQ--LIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMI 967 (1333)
Q Consensus 896 ~ll~~~l~~~~~~~~~~wl~~~~~~~--~~~----~~~~--~l~vy~~l~~~~~i~~~~~~~~~~~~~~~~s~~L~~~ll 967 (1333)
.+++.++..++.+..++.+++.+|.. ... .... .+..+.+++++..++.++..++....+.+...++|.+++
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~ 100 (574)
T PRK11160 21 GILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVSHDATFRVLTHLRVFTF 100 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566666666666655421 110 0111 122344455566777788888888999999999999999
Q ss_pred HHHhcCccccccccCcchhHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHHHH
Q 000720 968 TSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISI-WYQAY 1046 (1333)
Q Consensus 968 ~~il~ap~~fFd~tp~GrIlnRfs~Di~~vd~~l~~~l~~~~~~~~~~l~~ivv~~~~~~~l~lv~ipl~~~~~-~~~~~ 1046 (1333)
+++++.|++||++.++|++++|+++|++.++..+...+..++..++.+++.++++++.+|+++++++.++++.. .+..+
T Consensus 101 ~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~ 180 (574)
T PRK11160 101 SKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLALTLGGILLLLLLLLPLL 180 (574)
T ss_pred HHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999887655444433 34456
Q ss_pred HHHHHHHHHHHHhHhhchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 1047 YITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFF 1126 (1333)
Q Consensus 1047 y~~~srel~rl~~~~~spl~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~ll~~~~~~ 1126 (1333)
+.+..++..+......+.+.+.+.|+++|+.+||+|+.|+++.+++.+..+++.+..........+.....+++..+...
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (574)
T PRK11160 181 FYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGLSQALMILANGLTVV 260 (574)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777777788888999999999999999999999999999999999999888888777777777777766665544
Q ss_pred HHHHHHHhccCCCCChHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCcccCCCCCCCCCCCc
Q 000720 1127 LVLIILVTLPRSAIDPSLAGLAATYGLN-LNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSS 1205 (1333)
Q Consensus 1127 ~~~~~~~~~~~~~~~~g~~gl~l~y~l~-l~~~l~~~v~~~~~le~~~~SveRI~~~~~~p~E~~~~~~~~~~~~~wp~~ 1205 (1333)
++..++.....+..+.|....++.|... ....+..+...+.++.....|.+|+.++++.|+|.+. +...++ .+..
T Consensus 261 ~i~~~g~~~~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~--~~~~~~--~~~~ 336 (574)
T PRK11160 261 LMLWLAAGGVGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTF--PTTSTA--AADQ 336 (574)
T ss_pred HHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC--CcccCC--CCCC
Confidence 4433333333455566654444444322 2334444556677888889999999999987765321 111111 1345
Q ss_pred ccEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcC
Q 000720 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1285 (1333)
Q Consensus 1206 G~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~i 1285 (1333)
|.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|.+||+|+++++.+++|++|
T Consensus 337 ~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 416 (574)
T PRK11160 337 VSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAI 416 (574)
T ss_pred CeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhhe
Confidence 78999999999976545699999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEecccccccccchhhhcCCC-CCCCHHHHHHHHHhCCCCccccc
Q 000720 1286 SIIPQDPMLFQGTVRTNLDPL-EQHSDQEIWEVKISKLLTHKSYQ 1329 (1333)
Q Consensus 1286 siVpQdp~LF~GTIR~NLdp~-~~~sDeeI~~aL~~~~L~~~~~~ 1329 (1333)
++|||||+||+|||||||... ++.+|+|+++|++++++.+.+.+
T Consensus 417 ~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~ 461 (574)
T PRK11160 417 SVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED 461 (574)
T ss_pred eEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC
Confidence 999999999999999999865 46899999999999999887654
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-47 Score=476.82 Aligned_cols=428 Identities=18% Similarity=0.198 Sum_probs=345.1
Q ss_pred HHHHHHHHHHHhhHHHHHHhcccc--cccc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000720 898 LCQVLFQALQMGSNYWIAWATDEK--RKVS---REQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFR 972 (1333)
Q Consensus 898 l~~~l~~~~~~~~~~wl~~~~~~~--~~~~---~~~~l~vy~~l~~~~~i~~~~~~~~~~~~~~~~s~~L~~~ll~~il~ 972 (1333)
++.++..++.+..++.+++..|.. +... ...+.+.+++++++..++.+++.++....+.+...++|.++++++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~ 89 (529)
T TIGR02857 10 LLGALGALLIIAQAWLLARVIDGLISAGEPLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRERLLAAVAA 89 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455556666666666655422 1111 12334455566677778888899999999999999999999999999
Q ss_pred CccccccccCcchhHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 973 APISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTAR 1052 (1333)
Q Consensus 973 ap~~fFd~tp~GrIlnRfs~Di~~vd~~l~~~l~~~~~~~~~~l~~ivv~~~~~~~l~lv~ipl~~~~~~~~~~y~~~sr 1052 (1333)
.|..||++.++|++++|+++|++.+++.+...+..++..++.+++.+++++..+|+++++++..+++..++..++.+..+
T Consensus 90 ~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~ 169 (529)
T TIGR02857 90 LGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFMILIGWAAQ 169 (529)
T ss_pred CCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988888888888888889999999998887766665555555555556666
Q ss_pred HHHHHHhHhhchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 000720 1053 ELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVL-II 1131 (1333)
Q Consensus 1053 el~rl~~~~~spl~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~ll~~~~~~~~~-~~ 1131 (1333)
+..+......+...+++.|+++|+.+||+|+.|+++.+++.+..++..+..........+......++..+...++. +.
T Consensus 170 ~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (529)
T TIGR02857 170 AAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSVALVAVYI 249 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666667777899999999999999999999999999999999888887777766666766666666554433322 22
Q ss_pred HHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCcccCCCCCCCCCCCcccEEEE
Q 000720 1132 LVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELE 1211 (1333)
Q Consensus 1132 ~~~~~~~~~~~g~~gl~l~y~l~l~~~l~~~v~~~~~le~~~~SveRI~~~~~~p~E~~~~~~~~~~~~~wp~~G~I~f~ 1211 (1333)
+.....+.++.|.+..++.|+..+..++..+...+..+.+...+.+|+.++++.|++.+. . . +...+..|.|+|+
T Consensus 250 ~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~---~-~-~~~~~~~~~i~~~ 324 (529)
T TIGR02857 250 GFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAG---K-A-PVTAAPAPSLEFS 324 (529)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC---C-c-CCCCCCCCeEEEE
Confidence 222235677888777777888788888888888899999999999999999985543211 1 1 1112234689999
Q ss_pred EEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeEeccc
Q 000720 1212 NLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQD 1291 (1333)
Q Consensus 1212 nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isiVpQd 1291 (1333)
||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|.+||+|+++++.+++|+++++||||
T Consensus 325 ~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~ 404 (529)
T TIGR02857 325 GLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQH 404 (529)
T ss_pred EEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCC
Confidence 99999976555699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhhhcCCC-CCCCHHHHHHHHHhCCCCcccccC
Q 000720 1292 PMLFQGTVRTNLDPL-EQHSDQEIWEVKISKLLTHKSYQC 1330 (1333)
Q Consensus 1292 p~LF~GTIR~NLdp~-~~~sDeeI~~aL~~~~L~~~~~~~ 1330 (1333)
|++|+|||||||..+ ++++|+|+++|++++++.+...+.
T Consensus 405 ~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~l 444 (529)
T TIGR02857 405 PFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAAL 444 (529)
T ss_pred CcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhC
Confidence 999999999999875 468999999999999998765544
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-46 Score=474.50 Aligned_cols=431 Identities=19% Similarity=0.231 Sum_probs=364.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhcccccc---cc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 895 VILLCQVLFQALQMGSNYWIAWATDEKRK---VS-REQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSV 970 (1333)
Q Consensus 895 ~~ll~~~l~~~~~~~~~~wl~~~~~~~~~---~~-~~~~l~vy~~l~~~~~i~~~~~~~~~~~~~~~~s~~L~~~ll~~i 970 (1333)
+.+++.++..++....+++++...+.... .. ...+...++++.++..++.+++.++....+.+....++..+++++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~~ 97 (571)
T TIGR02203 18 LAGVAMILVAATESTLAALLKPLLDDGFGGRDRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKL 97 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455556666666666644432111 11 122334566667777788888999999999999999999999999
Q ss_pred hcCccccccccCcchhHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 971 FRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITT 1050 (1333)
Q Consensus 971 l~ap~~fFd~tp~GrIlnRfs~Di~~vd~~l~~~l~~~~~~~~~~l~~ivv~~~~~~~l~lv~ipl~~~~~~~~~~y~~~ 1050 (1333)
++.|.++|++.+.|++++|+++|++.+++.+...+..++..++.+++.++++++.+|+++++++.+.++..++..++.+.
T Consensus 98 ~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~~l~~~~~~~~~~~ 177 (571)
T TIGR02203 98 LGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKR 177 (571)
T ss_pred HcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888888888888888888
Q ss_pred HHHHHHHHhHhhchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 1051 ARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLI 1130 (1333)
Q Consensus 1051 srel~rl~~~~~spl~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~ll~~~~~~~~~~ 1130 (1333)
.++..+......++..+.+.|+++|+.+||+++.++++.+++.+..++..+..........+.....+++..+...++++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (571)
T TIGR02203 178 LRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLF 257 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888889999999999999999999999999999999999999999888888777777777777766554443333
Q ss_pred HH-HhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCcccCCCCCCCCCCCcccEE
Q 000720 1131 IL-VTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIE 1209 (1333)
Q Consensus 1131 ~~-~~~~~~~~~~g~~gl~l~y~l~l~~~l~~~v~~~~~le~~~~SveRI~~~~~~p~E~~~~~~~~~~~~~wp~~G~I~ 1209 (1333)
++ .....+.+++|.+..+.++...+..++..+...+.++.+...+.+|+.++++.++|.+. ...+.. +..++|+
T Consensus 258 ~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~---~~~~~~--~~~~~i~ 332 (571)
T TIGR02203 258 IALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDT---GTRAIE--RARGDVE 332 (571)
T ss_pred HHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC---CCCCCC--CCCCeEE
Confidence 33 23346778999988889999999999999999999999999999999999987665431 111111 2457899
Q ss_pred EEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeEec
Q 000720 1210 LENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIP 1289 (1333)
Q Consensus 1210 f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isiVp 1289 (1333)
|+||+|+|+++.+++|+|+||+|++||+|||||+||||||||+++|.|+++|++|+|++||+|+++++.+++|+++++||
T Consensus 333 ~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~ 412 (571)
T TIGR02203 333 FRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVS 412 (571)
T ss_pred EEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEc
Confidence 99999999765556999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccchhhhcCCCC--CCCHHHHHHHHHhCCCCcccccC
Q 000720 1290 QDPMLFQGTVRTNLDPLE--QHSDQEIWEVKISKLLTHKSYQC 1330 (1333)
Q Consensus 1290 Qdp~LF~GTIR~NLdp~~--~~sDeeI~~aL~~~~L~~~~~~~ 1330 (1333)
|||++|+|||||||..++ +++|+|++++|++|++.+.....
T Consensus 413 Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~l 455 (571)
T TIGR02203 413 QDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKL 455 (571)
T ss_pred cCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhC
Confidence 999999999999998763 69999999999999998765443
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-46 Score=474.37 Aligned_cols=429 Identities=18% Similarity=0.188 Sum_probs=353.6
Q ss_pred HHHHHHHHHHHhhHHHHHHhccccccc-ch---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000720 898 LCQVLFQALQMGSNYWIAWATDEKRKV-SR---EQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRA 973 (1333)
Q Consensus 898 l~~~l~~~~~~~~~~wl~~~~~~~~~~-~~---~~~l~vy~~l~~~~~i~~~~~~~~~~~~~~~~s~~L~~~ll~~il~a 973 (1333)
++.++.........++++...+..... .. ..+...+++++++..++.+++.++....+.+....++.++++++++.
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~ 111 (582)
T PRK11176 32 VALILNAASDTFMLSLLKPLLDDGFGKADRSVLKWMPLVVIGLMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGM 111 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 333444445555666666554321111 11 11222233455566777778888888999999999999999999999
Q ss_pred ccccccccCcchhHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 974 PISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARE 1053 (1333)
Q Consensus 974 p~~fFd~tp~GrIlnRfs~Di~~vd~~l~~~l~~~~~~~~~~l~~ivv~~~~~~~l~lv~ipl~~~~~~~~~~y~~~sre 1053 (1333)
|.++|++...|++++|+++|++.+.+.+...+..++..++.+++.++++++.+|+++++++.++++..++..+..+..++
T Consensus 112 ~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~ 191 (582)
T PRK11176 112 PVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRN 191 (582)
T ss_pred CHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999887777777766666677777777
Q ss_pred HHHHHhHhhchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 000720 1054 LARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIIL- 1132 (1333)
Q Consensus 1054 l~rl~~~~~spl~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~ll~~~~~~~~~~~~- 1132 (1333)
..+......+...+++.|.++|+.+||+|+.|+++.+++.+..++..+..........+.....+++..+...++++++
T Consensus 192 ~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 271 (582)
T PRK11176 192 ISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAAS 271 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777888999999999999999999999999999999999999998888888888877777777665444433332
Q ss_pred HhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCcccCCCCCCCCCCCcccEEEEE
Q 000720 1133 VTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELEN 1212 (1333)
Q Consensus 1133 ~~~~~~~~~~g~~gl~l~y~l~l~~~l~~~v~~~~~le~~~~SveRI~~~~~~p~E~~~~~~~~~~~~~wp~~G~I~f~n 1212 (1333)
.....+.+++|.+..++++...+..++..+...+..+++...+.+|+.++++.|+|.+. +. ....|..+.|+|+|
T Consensus 272 ~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~---~~--~~~~~~~~~i~~~~ 346 (582)
T PRK11176 272 FPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDE---GK--RVIERAKGDIEFRN 346 (582)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCC---CC--cCCCCCCCeEEEEE
Confidence 22345778899988888998888899999999999999999999999999987765321 11 11124457899999
Q ss_pred EEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeEecccc
Q 000720 1213 LLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDP 1292 (1333)
Q Consensus 1213 Vsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isiVpQdp 1292 (1333)
|+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+++|++|+|++||+|+++++.+++|++|++|||||
T Consensus 347 vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~ 426 (582)
T PRK11176 347 VTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNV 426 (582)
T ss_pred EEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCc
Confidence 99999766567999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhhcCCC--CCCCHHHHHHHHHhCCCCcccccCC
Q 000720 1293 MLFQGTVRTNLDPL--EQHSDQEIWEVKISKLLTHKSYQCE 1331 (1333)
Q Consensus 1293 ~LF~GTIR~NLdp~--~~~sDeeI~~aL~~~~L~~~~~~~~ 1331 (1333)
++|+||||+||..+ ++++|+|+++|++++++.+.+...|
T Consensus 427 ~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp 467 (582)
T PRK11176 427 HLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMD 467 (582)
T ss_pred eeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcc
Confidence 99999999999864 3489999999999999987765543
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-46 Score=482.87 Aligned_cols=448 Identities=18% Similarity=0.205 Sum_probs=359.4
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhHHHHHHhccccc-ccc---hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 877 WTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKR-KVS---REQLIGVFIFLSGGSSFFILGRAVLLA 952 (1333)
Q Consensus 877 ~~~y~~y~~~~~~~~~~~~~ll~~~l~~~~~~~~~~wl~~~~~~~~-~~~---~~~~l~vy~~l~~~~~i~~~~~~~~~~ 952 (1333)
+..++.+++...+ .+...+++.++..++..+.++.++...|... ..+ ...+...++++.++..++.+++.++..
T Consensus 127 ~~~~~~~~~~~~~--~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~ 204 (694)
T TIGR01846 127 FSWFIPAIIRYRK--QFREVLLISLALQLFALVTPLLFQVVIDKVLVHRGLSTLSVLALAMLAVAIFEPALGGLRTYLFA 204 (694)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555543211 2223344445556666777777776554321 111 122334455556667788889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCccccccccCcchhHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 000720 953 TIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPL 1032 (1333)
Q Consensus 953 ~~~~~~s~~L~~~ll~~il~ap~~fFd~tp~GrIlnRfs~Di~~vd~~l~~~l~~~~~~~~~~l~~ivv~~~~~~~l~lv 1032 (1333)
..+.+...+++.++++++++.|++||++.++|++++|+ +|++.+.+.+...+..++..++.+++.++++++.+|+++++
T Consensus 205 ~~~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li 283 (694)
T TIGR01846 205 HLTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGV 283 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999 69999999998888877777777777788899999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 1033 FLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEW 1112 (1333)
Q Consensus 1033 ~ipl~~~~~~~~~~y~~~srel~rl~~~~~spl~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~w 1112 (1333)
++..++++..+..+..+..++..+......+...+++.|+++|+.+||+||.|+++.+++.+..++..+..+.......+
T Consensus 284 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (694)
T TIGR01846 284 VIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNI 363 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666666666555655556666666667788899999999999999999999999999999999998888888777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-hccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCc
Q 000720 1113 LCLRINLLFNFAFFLVLIILV-TLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPL 1191 (1333)
Q Consensus 1113 l~~rl~ll~~~~~~~~~~~~~-~~~~~~~~~g~~gl~l~y~l~l~~~l~~~v~~~~~le~~~~SveRI~~~~~~p~E~~~ 1191 (1333)
.....+++..+..+++.+++. ....+.++.|.+..+.++...+..++..+...+.+++....++||+.++++.|+|.+.
T Consensus 364 ~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~ 443 (694)
T TIGR01846 364 AGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRS 443 (694)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccC
Confidence 777777766654444433332 2345778888888888888888899999999999999999999999999988776431
Q ss_pred ccCCCCCCCCCCCcccEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCE
Q 000720 1192 VIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGV 1271 (1333)
Q Consensus 1192 ~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGv 1271 (1333)
. +..+.+ ...|.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|+|||+
T Consensus 444 ~--~~~~~~--~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~ 519 (694)
T TIGR01846 444 A--GLAALP--ELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGV 519 (694)
T ss_pred C--CCCCCC--CCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE
Confidence 1 111111 235789999999999876667999999999999999999999999999999999999999999999999
Q ss_pred eCCCCChHHHhhcCeEecccccccccchhhhcCCC-CCCCHHHHHHHHHhCCCCcccccCC
Q 000720 1272 DISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPL-EQHSDQEIWEVKISKLLTHKSYQCE 1331 (1333)
Q Consensus 1272 dI~~i~l~~LRs~isiVpQdp~LF~GTIR~NLdp~-~~~sDeeI~~aL~~~~L~~~~~~~~ 1331 (1333)
|+++++.+++|+++++|||||++|+|||||||... ++++|+++++|++++++.+...+.|
T Consensus 520 ~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp 580 (694)
T TIGR01846 520 DLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELP 580 (694)
T ss_pred ehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCc
Confidence 99999999999999999999999999999999875 4689999999999999988765543
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-46 Score=478.90 Aligned_cols=462 Identities=21% Similarity=0.269 Sum_probs=345.9
Q ss_pred HHHHHHHHHHHHHHHHhcccc--C-CCChHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 000720 346 GIRVRSALTVLIYKRSMAIKF--A-GPSSGIIINMINVDVERIGDFFLYI-HRIWLLPVQVFLALVILYKNLGAAPAFAA 421 (1333)
Q Consensus 346 ~~rir~~l~~~iy~K~L~ls~--~-~~~~G~i~nlms~D~~~i~~~~~~~-~~~w~~plqi~~~l~lL~~~lG~~a~l~g 421 (1333)
|++.-..|-..++++.++-+. . ..++|.|+|..|.|++.+.+-++.. ..+....++++.++.+.-...- +..++.
T Consensus 886 ~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P-~fli~~ 964 (1381)
T KOG0054|consen 886 GLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTP-WFLIAI 964 (1381)
T ss_pred HHHHHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhH-HHHHHH
Confidence 344444444555555554332 2 2389999999999999999876544 3444444555555444443332 444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 422 LFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAI 501 (1333)
Q Consensus 422 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~a~~ 501 (1333)
+.+.++...++.++.+-.+..++--...+.-=....+|.|+|+-+|+.|+.|++|.++-.+.=+.-. +.+.+..+.+
T Consensus 965 ~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~---~~~f~~~~a~ 1041 (1381)
T KOG0054|consen 965 IPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENS---RAFFLSISAN 1041 (1381)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhH---HHHHHHHHHH
Confidence 4445544444444443333333333333444467889999999999999999999988766533221 2222222222
Q ss_pred HHHHHHH----HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-C
Q 000720 502 AFLFWAS----PTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQ-K 576 (1333)
Q Consensus 502 ~~~~~~~----p~lv~~~tF~~~~~~~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~-~ 576 (1333)
-++..-. ..++..+++.+.+..++..+||.|=-+++.--.+..-+..+-.....+-.-.+|.+||.+|.+.|++ +
T Consensus 1042 RWla~Rle~ig~~~v~~~al~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p 1121 (1381)
T KOG0054|consen 1042 RWLAVRLELLGNLVVLIAALFAVLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAP 1121 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCC
Confidence 2221111 1222222222222223337788887777766667777777777778888889999999999995542 1
Q ss_pred CCC-C--CCCCCCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCC
Q 000720 577 KPI-T--EPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISG 652 (1333)
Q Consensus 577 ~~~-~--~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G 652 (1333)
... + .++..++++.|+|+|.+..|.++ .+++||+ |++|++||++||||++|||||||+++|.++.+|.+|
T Consensus 1122 ~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~------lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G 1195 (1381)
T KOG0054|consen 1122 LEIEESRPPPSWPSKGEIEFEDLSLRYRPN------LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEG 1195 (1381)
T ss_pred CCCcCCCCCCCCCCCCeEEEEEeEEEeCCC------CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCC
Confidence 111 1 23344678899999999999875 4689999 999999999999999999999999999999999999
Q ss_pred cEEEECC-------------eEEEEcCCCCCCCCCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCC
Q 000720 653 AAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1333)
Q Consensus 653 ~~i~~~g-------------~iayv~Q~~~i~~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~ 719 (1333)
++ .+|| +++.+||+|.+|+||+|.|+.--.++.++...++++.|.|.+-++.+|.|.++++.|+|.
T Consensus 1196 ~I-~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~ 1274 (1381)
T KOG0054|consen 1196 EI-LIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGE 1274 (1381)
T ss_pred eE-EEcCeecccccHHHHHhcCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCc
Confidence 96 7776 579999999999999999998777888888899999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEE
Q 000720 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQ 799 (1333)
Q Consensus 720 ~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~ 799 (1333)
|+|-||||-++|||||.++++|++|||+|+++|++| ..+.++.++...+++|||.|.|+++.+.++|||+|||+|+|+|
T Consensus 1275 N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~T-D~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~E 1353 (1381)
T KOG0054|consen 1275 NFSVGQRQLLCLARALLRKSKILVLDEATASVDPET-DALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVE 1353 (1381)
T ss_pred cCChHHHHHHHHHHHHhccCCEEEEecccccCChHH-HHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEee
Confidence 999999999999999999999999999999999998 6677888898899999999999999999999999999999999
Q ss_pred ccChHHHHhhcchHHHHHHH
Q 000720 800 SGKYEDLIADQNSELVRQMK 819 (1333)
Q Consensus 800 ~g~~~~l~~~~~~~~~~~~~ 819 (1333)
.|+|++++++++..+.+.+.
T Consensus 1354 fdsP~~Ll~~~~S~f~~~l~ 1373 (1381)
T KOG0054|consen 1354 FDSPAELLSDKDSLFSSLLK 1373 (1381)
T ss_pred cCChHHHHhCCcchHHHHHH
Confidence 99999999877776654443
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=465.64 Aligned_cols=432 Identities=19% Similarity=0.237 Sum_probs=349.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHhccc-ccccc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000720 897 LLCQVLFQALQMGSNYWIAWATDE-KRKVS---REQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFR 972 (1333)
Q Consensus 897 ll~~~l~~~~~~~~~~wl~~~~~~-~~~~~---~~~~l~vy~~l~~~~~i~~~~~~~~~~~~~~~~s~~L~~~ll~~il~ 972 (1333)
+++.++..++.++.++.+....|. -...+ ...++.+++++.++..++.+++.++....+.+....++.++++++++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~ 103 (576)
T TIGR02204 24 LVALLITAAATLSLPYAVRLMIDHGFSKDSSGLLNRYFAFLLVVALVLALGTAARFYLVTWLGERVVADIRRAVFAHLIS 103 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334455566666666666654432 11111 12233344444555666777888888899999999999999999999
Q ss_pred CccccccccCcchhHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 973 APISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTAR 1052 (1333)
Q Consensus 973 ap~~fFd~tp~GrIlnRfs~Di~~vd~~l~~~l~~~~~~~~~~l~~ivv~~~~~~~l~lv~ipl~~~~~~~~~~y~~~sr 1052 (1333)
.|.++|+..+.|++++|+++|++.+++.....+..++..++.+++.+++++..+|+++++++..+++.+.+..++.+..+
T Consensus 104 ~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~ 183 (576)
T TIGR02204 104 LSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLFGRRVR 183 (576)
T ss_pred CCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998989899999999999999999999888777666666666666777777
Q ss_pred HHHHHHhHhhchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 1053 ELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIIL 1132 (1333)
Q Consensus 1053 el~rl~~~~~spl~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~ll~~~~~~~~~~~~ 1132 (1333)
...+......+...+++.|+++|+.+||+|+.|+++.+++.+..++..+..........|+.....++..+...++.+++
T Consensus 184 ~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 263 (576)
T TIGR02204 184 KLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVG 263 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888888999999999999999999999999999999999988877776666666666555554433333322222
Q ss_pred -HhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCcccCCCCCCCCCCCcccEEEE
Q 000720 1133 -VTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELE 1211 (1333)
Q Consensus 1133 -~~~~~~~~~~g~~gl~l~y~l~l~~~l~~~v~~~~~le~~~~SveRI~~~~~~p~E~~~~~~~~~~~~~wp~~G~I~f~ 1211 (1333)
.....+.+++|.+..+..|...+..++..+...+.++.+...+.+|+.++++.++|.+.. ....+..+|..+.|+|+
T Consensus 264 ~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~--~~~~~~~~~~~~~i~~~ 341 (576)
T TIGR02204 264 AHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAP--AHPKTLPVPLRGEIEFE 341 (576)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCC--CCCccCCcCCCceEEEE
Confidence 223456788888888888888899999999999999999999999999999876553211 11111223445789999
Q ss_pred EEEEEECCCC-CCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeEecc
Q 000720 1212 NLLVQYNPTL-PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQ 1290 (1333)
Q Consensus 1212 nVsf~Y~~~~-p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isiVpQ 1290 (1333)
||+|+|+++. +++|+|+||+|+|||++||||+||||||||+++|.|+++|++|+|.+||+|+++++.+++|++++++||
T Consensus 342 ~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q 421 (576)
T TIGR02204 342 QVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQ 421 (576)
T ss_pred EEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEcc
Confidence 9999997532 569999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccchhhhcCCCC-CCCHHHHHHHHHhCCCCcccccC
Q 000720 1291 DPMLFQGTVRTNLDPLE-QHSDQEIWEVKISKLLTHKSYQC 1330 (1333)
Q Consensus 1291 dp~LF~GTIR~NLdp~~-~~sDeeI~~aL~~~~L~~~~~~~ 1330 (1333)
||++|+|||||||.+++ +.+|+++|++|+++++.+.+.+.
T Consensus 422 ~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l 462 (576)
T TIGR02204 422 DPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISAL 462 (576)
T ss_pred CCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhC
Confidence 99999999999998754 57999999999999998765544
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-45 Score=458.42 Aligned_cols=434 Identities=14% Similarity=0.159 Sum_probs=341.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhcccccc-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000720 893 VPVILLCQVLFQALQMGSNYWIAWATDEKRK-VSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVF 971 (1333)
Q Consensus 893 ~~~~ll~~~l~~~~~~~~~~wl~~~~~~~~~-~~~~~~l~vy~~l~~~~~i~~~~~~~~~~~~~~~~s~~L~~~ll~~il 971 (1333)
+.+.+++.++..++.+..++++.+..|.-.. .....++.+++++.++..+..+....+......+....++.+++++++
T Consensus 21 ~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 100 (588)
T PRK13657 21 GILLAVANVLLAAATFAEPILFGRIIDAISGKGDIFPLLAAWAGFGLFNIIAGVLVARHADRLAHRRRLAVLTEYFERII 100 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566777777788888766653221 111122333333333333344444444455555666667779999999
Q ss_pred cCccccccccCcchhHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 972 RAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTA 1051 (1333)
Q Consensus 972 ~ap~~fFd~tp~GrIlnRfs~Di~~vd~~l~~~l~~~~~~~~~~l~~ivv~~~~~~~l~lv~ipl~~~~~~~~~~y~~~s 1051 (1333)
+.|..+|++.+.|++++|+++|++.+.......+..++..++..++.+++++..+|+++++++.+++++..+..++.+..
T Consensus 101 ~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~ 180 (588)
T PRK13657 101 QLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVLGIVYTLITTLVMRKT 180 (588)
T ss_pred hCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988888888888888888888888899999998888877777777788888888
Q ss_pred HHHHHHHhHhhchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 1052 RELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLII 1131 (1333)
Q Consensus 1052 rel~rl~~~~~spl~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~ll~~~~~~~~~~~ 1131 (1333)
++..+......+...+++.|+++|+.+||+|+.++.+.+++.+..++..+..........+.....+++..+...+++++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (588)
T PRK13657 181 KDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAASTITMLAILVL 260 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888889999999999999999999999999999999999998888777666666665555555444433333332
Q ss_pred H-HhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCcccCCCCCCCCCCCcccEEE
Q 000720 1132 L-VTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIEL 1210 (1333)
Q Consensus 1132 ~-~~~~~~~~~~g~~gl~l~y~l~l~~~l~~~v~~~~~le~~~~SveRI~~~~~~p~E~~~~~~~~~~~~~wp~~G~I~f 1210 (1333)
+ .....+.+++|.+..++.+...+...+..+...+.++.....+.+|+.++.+.+++.+.. ++ ..+. -+..+.|+|
T Consensus 261 g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~-~~-~~~~-~~~~~~I~~ 337 (588)
T PRK13657 261 GAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDP-PG-AIDL-GRVKGAVEF 337 (588)
T ss_pred HHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC-CC-CCCc-CCCCCeEEE
Confidence 2 223467788998888888888888888888888888999999999999998765442211 11 1111 123468999
Q ss_pred EEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeEecc
Q 000720 1211 ENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQ 1290 (1333)
Q Consensus 1211 ~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isiVpQ 1290 (1333)
+||+|+|+++ +++|+|+||+++|||++||||+||||||||+++|.|+|+|++|+|.|||+|+++++.+++|++|++|||
T Consensus 338 ~~vsf~y~~~-~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q 416 (588)
T PRK13657 338 DDVSFSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQ 416 (588)
T ss_pred EEEEEEeCCC-CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEec
Confidence 9999999744 459999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccchhhhcCCC-CCCCHHHHHHHHHhCCCCcccccC
Q 000720 1291 DPMLFQGTVRTNLDPL-EQHSDQEIWEVKISKLLTHKSYQC 1330 (1333)
Q Consensus 1291 dp~LF~GTIR~NLdp~-~~~sDeeI~~aL~~~~L~~~~~~~ 1330 (1333)
||.||+|||||||..+ ++.+|+|+++|++++++.+...+.
T Consensus 417 ~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~l 457 (588)
T PRK13657 417 DAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERK 457 (588)
T ss_pred CcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhC
Confidence 9999999999999876 468999999999999998766544
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=413.47 Aligned_cols=436 Identities=22% Similarity=0.301 Sum_probs=332.3
Q ss_pred ChHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 370 SSGIIINMINVDVERIGDFFLY-IHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIME 448 (1333)
Q Consensus 370 ~~G~i~nlms~D~~~i~~~~~~-~~~~w~~plqi~~~l~lL~~~lG~~a~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (1333)
.+|.+.--+..-..-|+...++ +..+-...+++.+...++++..|||.+...++.+++...+......+-..++++.++
T Consensus 37 ~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~ 116 (497)
T COG5265 37 RTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNN 116 (497)
T ss_pred ccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhh
Confidence 3444333333333344444443 334445568999999999999997777777666666665555555555555555555
Q ss_pred HHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000720 449 AKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRL----REIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLK 524 (1333)
Q Consensus 449 ~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~----R~~E~~~l~~~~~~~a~~~~~~~~~p~lv~~~tF~~~~~~~ 524 (1333)
+-.+--...-+.|-|-.++|.|+=|+.+..+..+. ++.+++..-....+...-..++.. .+....+-+..-+..
T Consensus 117 aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~~Sl~~Ln~gQ~~I~~~--~l~~~m~~s~~~v~~ 194 (497)
T COG5265 117 ADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLVLNFGQTAIFST--GLRVMMTMSALGVEE 194 (497)
T ss_pred hhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHH--HHHHHHhhcHHHHhh
Confidence 44444556778999999999999999877776543 333333222111211111111111 111122223333446
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CCCCCCCCCCC-CCCccEEEeeeEEEcCC
Q 000720 525 TPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDN-QKKPITEPTSK-ASDVAIDIEAGEYAWDA 602 (1333)
Q Consensus 525 ~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e-~~~~~~~~~~~-~~~~~I~i~~~~fsw~~ 602 (1333)
+.+|.++..-.-++...+..|++.+......+-|+++.++++.+.+..+- ..+...-++.. ...+.|.|+|++|.|+.
T Consensus 195 g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~d~pda~~L~~~~~g~v~F~~V~F~y~~ 274 (497)
T COG5265 195 GQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDP 274 (497)
T ss_pred ccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhccCCCCccccccccceEEEEEEEeeccc
Confidence 78999999999999999999999999999999999999999999887664 22211111111 33467999999999986
Q ss_pred cccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCe-------------EEEEcCCC
Q 000720 603 REENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-------------KAYVPQSS 668 (1333)
Q Consensus 603 ~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~-------------iayv~Q~~ 668 (1333)
+ .+.|++ |+++++|+.++++||+|+||||+++.|.+.+++.+|.+ .++|+ ||.|||+.
T Consensus 275 ~-------r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I-~id~qdir~vtq~slR~aIg~VPQDt 346 (497)
T COG5265 275 R-------RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSI-TIDGQDIRDVTQQSLRRAIGIVPQDT 346 (497)
T ss_pred c-------chhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceE-EEcchhHHHhHHHHHHHHhCcCcccc
Confidence 5 789999 99999999999999999999999999999999999986 77774 69999999
Q ss_pred CCCCCCHHHHhccCCcC-CHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCC
Q 000720 669 WIQTGTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDP 747 (1333)
Q Consensus 669 ~i~~~Tv~enI~~g~~~-~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP 747 (1333)
.+||.|+..||.+|++- .++......++.++.+.++.+|+|.+|.+||+|-.||||+||||++||++.++|+|++|||.
T Consensus 347 vLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~dea 426 (497)
T COG5265 347 VLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEA 426 (497)
T ss_pred eehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehh
Confidence 99999999999999864 34445566777888888999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccChHHHHhhcchHHHHH
Q 000720 748 FSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817 (1333)
Q Consensus 748 ~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~ 817 (1333)
|||||.|+.+.+ +..++...+|+|.+++.|+++.+-.||.|+||++|+|+|.|+++++++ .++.+.++
T Consensus 427 tsaldt~te~~i-q~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll~-~~g~ya~m 494 (497)
T COG5265 427 TSALDTHTEQAI-QAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLA-AGGLYAEM 494 (497)
T ss_pred hhHhhhhHHHHH-HHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHHH-cCChHHHH
Confidence 999999997766 445677778999999999999999999999999999999999999998 45555543
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-45 Score=457.12 Aligned_cols=396 Identities=19% Similarity=0.208 Sum_probs=323.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCcchhHHHHhccHHHHHhHHHHHHHHHH
Q 000720 930 IGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLA 1009 (1333)
Q Consensus 930 l~vy~~l~~~~~i~~~~~~~~~~~~~~~~s~~L~~~ll~~il~ap~~fFd~tp~GrIlnRfs~Di~~vd~~l~~~l~~~~ 1009 (1333)
+++++++.++..++.+++.++....+.+...++|.++++++++.|++||++.++|++++|+++|++.++......+..++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~ 118 (569)
T PRK10789 39 IGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLV 118 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 44444455556666777777888889999999999999999999999999999999999999999999987777777777
Q ss_pred HHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhchHHHHHHHHhcchHHHHhcccHHHH
Q 000720 1010 FALIQLLSIIILM-SQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRF 1088 (1333)
Q Consensus 1010 ~~~~~~l~~ivv~-~~~~~~l~lv~ipl~~~~~~~~~~y~~~srel~rl~~~~~spl~~~~~Etl~G~~tIRaf~~e~~f 1088 (1333)
..++..++.++++ +..+|+++++++..+++..++.+.+.+..++..+......+.+.+++.|+++|+.+||+|+.|+++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~ 198 (569)
T PRK10789 119 DSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQ 198 (569)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHH
Confidence 7766666665555 478998888777777777777777777777777777778889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 1089 LLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIIL-VTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLC 1167 (1333)
Q Consensus 1089 ~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~ll~~~~~~~~~~~~-~~~~~~~~~~g~~gl~l~y~l~l~~~l~~~v~~~~ 1167 (1333)
.+++.+..++..+..........+..........+...++.+++ .....+.+++|.+..+..|...+..++..+...+.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~ 278 (569)
T PRK10789 199 SALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFN 278 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888877776655555544444443333222222222 22345678888887788888888888888888889
Q ss_pred HHHHHhhHHHHHHHhhcCCCCCCcccCCCCCCCCCCCcccEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCcc
Q 000720 1168 NVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSG 1247 (1333)
Q Consensus 1168 ~le~~~~SveRI~~~~~~p~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSG 1247 (1333)
+++....+.+|+.++++.++|.+. +..+.+ +..|.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||
T Consensus 279 ~~~~~~~a~~ri~~ll~~~~~~~~---~~~~~~--~~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsG 353 (569)
T PRK10789 279 IVERGSAAYSRIRAMLAEAPVVKD---GSEPVP--EGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSG 353 (569)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccC---CCCCCC--CCCCcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCC
Confidence 999999999999999987654321 111111 235789999999999765456999999999999999999999999
Q ss_pred HHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeEecccccccccchhhhcCCC-CCCCHHHHHHHHHhCCCCcc
Q 000720 1248 KSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPL-EQHSDQEIWEVKISKLLTHK 1326 (1333)
Q Consensus 1248 KSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isiVpQdp~LF~GTIR~NLdp~-~~~sDeeI~~aL~~~~L~~~ 1326 (1333)
||||+++|.|+++|++|+|.+||+|+++++.+++|+++++|||||++|+|||||||..+ .+++|+++++|++++++.+.
T Consensus 354 KSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~ 433 (569)
T PRK10789 354 KSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDD 433 (569)
T ss_pred HHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999876 46899999999999999876
Q ss_pred cccC
Q 000720 1327 SYQC 1330 (1333)
Q Consensus 1327 ~~~~ 1330 (1333)
+.+.
T Consensus 434 i~~l 437 (569)
T PRK10789 434 ILRL 437 (569)
T ss_pred HHhC
Confidence 5443
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-44 Score=452.77 Aligned_cols=431 Identities=15% Similarity=0.191 Sum_probs=337.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhccccccc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000720 895 VILLCQVLFQALQMGSNYWIAWATDEKRKV-SREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRA 973 (1333)
Q Consensus 895 ~~ll~~~l~~~~~~~~~~wl~~~~~~~~~~-~~~~~l~vy~~l~~~~~i~~~~~~~~~~~~~~~~s~~L~~~ll~~il~a 973 (1333)
+.+++.++..++.++.++.+++..|..... +...++..++++.++..+..+....+....+.+...++++++++++++.
T Consensus 23 ~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~l 102 (585)
T TIGR01192 23 LIVIANITLAAITIAEPILFGRIIDAISSKSDVLPTLALWAGFGVFNTIAYVLVAREADRLAHGRRATLLTEAFGRIISM 102 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 444555666677777777777666422111 1112222222333333334444444445556666667777999999999
Q ss_pred ccccccccCcchhHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 974 PISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARE 1053 (1333)
Q Consensus 974 p~~fFd~tp~GrIlnRfs~Di~~vd~~l~~~l~~~~~~~~~~l~~ivv~~~~~~~l~lv~ipl~~~~~~~~~~y~~~sre 1053 (1333)
|++||+++++|++++|+++|++.+...+...+..++..++.+++.+++++..+|.++++++.+++++.++.+.+.+..++
T Consensus 103 ~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~ 182 (585)
T TIGR01192 103 PLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVLGILYILIAKLVMQRTKN 182 (585)
T ss_pred CHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988888888888888888888899999999998888888888888888888888
Q ss_pred HHHHHhHhhchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 000720 1054 LARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIIL- 1132 (1333)
Q Consensus 1054 l~rl~~~~~spl~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~ll~~~~~~~~~~~~- 1132 (1333)
..+......+...+++.|+++|+.|||+|+.|+++.+++.+..++..+..+.......+......++..+...++++++
T Consensus 183 ~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~ 262 (585)
T TIGR01192 183 GQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNRMASTISMMCILVIGT 262 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888889999999999999999999999999999999988887777665554444444444444433333333222
Q ss_pred HhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCcccCCCCCCCCCC-CcccEEEE
Q 000720 1133 VTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWP-SSGKIELE 1211 (1333)
Q Consensus 1133 ~~~~~~~~~~g~~gl~l~y~l~l~~~l~~~v~~~~~le~~~~SveRI~~~~~~p~E~~~~~~~~~~~~~wp-~~G~I~f~ 1211 (1333)
.....+.+++|.+..++.|...+...+..+...+.++.....+++|+.++.+.+++.+. ...+ ..++ ..|.|+|+
T Consensus 263 ~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~---~~~~-~~~~~~~~~i~~~ 338 (585)
T TIGR01192 263 VLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREE---PADA-PELPNVKGAVEFR 338 (585)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC---CccC-CCCCCCCCeEEEE
Confidence 22346678888888888888888888888888888889999999999999876544221 1111 1122 35689999
Q ss_pred EEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeEeccc
Q 000720 1212 NLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQD 1291 (1333)
Q Consensus 1212 nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isiVpQd 1291 (1333)
||+|+|+++. ++|+|+||+|++||++||||+||||||||+++|.|+++|++|+|.+||+|+++++.+++|+++++||||
T Consensus 339 ~v~~~y~~~~-~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~ 417 (585)
T TIGR01192 339 HITFEFANSS-QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQD 417 (585)
T ss_pred EEEEECCCCC-ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccC
Confidence 9999997544 499999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhhhcCCC-CCCCHHHHHHHHHhCCCCcccccC
Q 000720 1292 PMLFQGTVRTNLDPL-EQHSDQEIWEVKISKLLTHKSYQC 1330 (1333)
Q Consensus 1292 p~LF~GTIR~NLdp~-~~~sDeeI~~aL~~~~L~~~~~~~ 1330 (1333)
|.+|+|||||||..+ ++++|+|+++|++.+++.+...+.
T Consensus 418 ~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l 457 (585)
T TIGR01192 418 AGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKR 457 (585)
T ss_pred CccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhc
Confidence 999999999999876 458999999999999988765443
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-44 Score=447.62 Aligned_cols=429 Identities=15% Similarity=0.102 Sum_probs=326.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Q 000720 897 LLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPIS 976 (1333)
Q Consensus 897 ll~~~l~~~~~~~~~~wl~~~~~~~~~~~~~~~l~vy~~l~~~~~i~~~~~~~~~~~~~~~~s~~L~~~ll~~il~ap~~ 976 (1333)
+++.++..+..+...+.++.+.+...... ...+..++++.++..++.++..++....+.+...++|.++++++++.|++
T Consensus 24 ~~~~~~~~~~~~~~~~~i~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~ 102 (555)
T TIGR01194 24 IALGLAGGLAIIALLASINNAIHEENFLG-QGSLFSFGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIE 102 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 33444555555666666666654221111 11223344455566677888888889999999999999999999999999
Q ss_pred cccccCcchhHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 977 FFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELAR 1056 (1333)
Q Consensus 977 fFd~tp~GrIlnRfs~Di~~vd~~l~~~l~~~~~~~~~~l~~ivv~~~~~~~l~lv~ipl~~~~~~~~~~y~~~srel~r 1056 (1333)
||++.++|++++|+++|++.+++.+.. +..++..++.+++.++++++.+|.++++++.++++...+..+..+..++..+
T Consensus 103 ~~~~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~ 181 (555)
T TIGR01194 103 EIDRRGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSVPMFAITISAIIIGTAAQLLAFMGGFKFFH 181 (555)
T ss_pred HHHhcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998864 7777888888888999999999999988777666666666656555666666
Q ss_pred HHhHhhchHHHHHHHHhcchHHHHhcccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000720 1057 MVGTRKAPILHHFSESIAGATTIRCFNQEN--RFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVT 1134 (1333)
Q Consensus 1057 l~~~~~spl~~~~~Etl~G~~tIRaf~~e~--~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~ll~~~~~~~~~~~~~~ 1134 (1333)
......+.+.+++.|.+.|+++||+|+.++ ...+++.+..++..+................+++..+...+.+++...
T Consensus 182 ~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (555)
T TIGR01194 182 AARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFIAAENFGQLLFFLLIGCALFAAAM 261 (555)
T ss_pred HHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777899999999999999999999954 556777777777666555433333332222333322222211211111
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCccc--CCCCC---CCCCCCcccEE
Q 000720 1135 LPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVI--KNSRP---SPEWPSSGKIE 1209 (1333)
Q Consensus 1135 ~~~~~~~~g~~gl~l~y~l~l~~~l~~~v~~~~~le~~~~SveRI~~~~~~p~E~~~~~--~~~~~---~~~wp~~G~I~ 1209 (1333)
.+.++.|.+..++.|...+..++..+...+.++++...|.+|+.++++.+.+++... ++... .+.....+.|+
T Consensus 262 --~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 339 (555)
T TIGR01194 262 --FASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIE 339 (555)
T ss_pred --hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccCCCCceEE
Confidence 245777877778888888888888899999999999999999999976432221110 00000 01112347899
Q ss_pred EEEEEEEECCC---CCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCe
Q 000720 1210 LENLLVQYNPT---LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1333)
Q Consensus 1210 f~nVsf~Y~~~---~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~is 1286 (1333)
|+||+|+|++. .+++|+|+||+|++||++||||+||||||||+++|.|+++|++|+|.+||+|+++++.+++|++++
T Consensus 340 ~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 419 (555)
T TIGR01194 340 LKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFS 419 (555)
T ss_pred EEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCc
Confidence 99999999643 235999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecccccccccchhhhcCCCCCCCHHHHHHHHHhCCCCcccccCC
Q 000720 1287 IIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVKISKLLTHKSYQCE 1331 (1333)
Q Consensus 1287 iVpQdp~LF~GTIR~NLdp~~~~sDeeI~~aL~~~~L~~~~~~~~ 1331 (1333)
+|||||++|++|+|+|+.| +.+|++++++++++++.+.+..+|
T Consensus 420 ~v~q~~~lf~~ti~~n~~~--~~~~~~~~~~~~~~~l~~~~~~lp 462 (555)
T TIGR01194 420 AIFADFHLFDDLIGPDEGE--HASLDNAQQYLQRLEIADKVKIED 462 (555)
T ss_pred EEccChhhhhhhhhccccc--chhHHHHHHHHHHcCCchhhcccc
Confidence 9999999999999999754 578999999999999998765543
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-45 Score=455.90 Aligned_cols=196 Identities=23% Similarity=0.281 Sum_probs=157.5
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|++++|+. .++++| ||++++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 5 ~l~~~~l~~~~~~--------~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i-~~~g~~i~~~~~~ 75 (510)
T PRK09700 5 YISMAGIGKSFGP--------VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTI-TINNINYNKLDHK 75 (510)
T ss_pred eEEEeeeEEEcCC--------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEE-EECCEECCCCCHH
Confidence 4899999999953 358999 99999999999999999999999999999999999986 5554
Q ss_pred -----eEEEEcCCCCCC-CCCHHHHhccCCcC----------CHH----HHHHHHHHcccchHHHhhcCCCccccCCCCC
Q 000720 660 -----KKAYVPQSSWIQ-TGTIRENILFGKDM----------RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1333)
Q Consensus 660 -----~iayv~Q~~~i~-~~Tv~enI~~g~~~----------~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~ 719 (1333)
.++|++|++.++ +.|++||+.++... +.. +..+.++.+++ ....+++..
T Consensus 76 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~ 144 (510)
T PRK09700 76 LAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGL-----------KVDLDEKVA 144 (510)
T ss_pred HHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCC-----------CCCcccchh
Confidence 389999998654 56999999876421 111 11122222222 122356788
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEE
Q 000720 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE 798 (1333)
Q Consensus 720 ~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~ 798 (1333)
+||||||||++||||++.+|+++||||||++||+.+.+.+.+.+.+...+|+|||++|||++++.. ||++++|++|+++
T Consensus 145 ~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~ 224 (510)
T PRK09700 145 NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSV 224 (510)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEe
Confidence 999999999999999999999999999999999999888876544433458999999999999865 9999999999998
Q ss_pred EccChHH
Q 000720 799 QSGKYED 805 (1333)
Q Consensus 799 ~~g~~~~ 805 (1333)
+.|++++
T Consensus 225 ~~g~~~~ 231 (510)
T PRK09700 225 CSGMVSD 231 (510)
T ss_pred eecchhh
Confidence 7765543
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-45 Score=492.83 Aligned_cols=190 Identities=21% Similarity=0.242 Sum_probs=150.0
Q ss_pred cccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCC----cCCCCcEEEECC------------eEEEEcCCCC-CCC
Q 000720 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEI----PRISGAAIKVHG------------KKAYVPQSSW-IQT 672 (1333)
Q Consensus 611 ~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~----~~~~G~~i~~~g------------~iayv~Q~~~-i~~ 672 (1333)
+.+|+| |+.+++||+++|+|||||||||||++|+|.. +|.+|++ .++| .++|++|++. +++
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I-~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVI-TYDGITPEEIKKHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEE-EECCEehHHHHhhcCceeEEeccccccCCC
Confidence 468999 9999999999999999999999999999986 4688986 6654 3799999875 456
Q ss_pred CCHHHHhccCCc----------CCHHHHH-----HHHHHcccchHHHhhcCCCccccCC-CCCCCChHHHHHHHHHHHHc
Q 000720 673 GTIRENILFGKD----------MRQSFYE-----EVLEGCALNQDIEMWADGDLSVVGE-RGINLSGGQKQRIQLARAVY 736 (1333)
Q Consensus 673 ~Tv~enI~~g~~----------~~~~~~~-----~v~~~~~l~~d~~~~~~g~~t~ig~-~g~~LSGGQkqRv~LARAl~ 736 (1333)
.||+||+.|+.. ..++.+. ++++..++. +-.+|.+|+ ....|||||||||+||||++
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-------~~~~t~vg~~~~~~LSGGerkRvsIA~aL~ 225 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLS-------HTRNTKVGNDFVRGVSGGERKRVSIAEASL 225 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcc-------cccCceeCCCcCCCCCcccchHHHHHHHHH
Confidence 799999998532 1122111 122323322 223455653 56789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCch-hhh-hcCCEEEEEeCCeEEEccChHHHHh
Q 000720 737 SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQL-EFL-DAADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 737 ~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~-~~l-~~aD~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
.+|++++|||||+|||+.++.++.+.+.+... .|+|+|+++||+ +.+ +.+|+|++|++|++++.|+.+++.+
T Consensus 226 ~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~ 300 (1394)
T TIGR00956 226 GGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQ 300 (1394)
T ss_pred hCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHH
Confidence 99999999999999999999988875444333 389999999997 455 5699999999999999999988743
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-46 Score=416.23 Aligned_cols=422 Identities=19% Similarity=0.289 Sum_probs=322.3
Q ss_pred HHHHhhHHHHHHhccc--ccccchhhHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Q 000720 905 ALQMGSNYWIAWATDE--KRKVSREQLIGVFIFLSG------GSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPIS 976 (1333)
Q Consensus 905 ~~~~~~~~wl~~~~~~--~~~~~~~~~l~vy~~l~~------~~~i~~~~~~~~~~~~~~~~s~~L~~~ll~~il~ap~~ 976 (1333)
......+...+|..+. .|..........|+++.+ +++++.-+|+++...+..-+.+.+-.++|+|+....+.
T Consensus 229 li~~~~pi~~k~iv~~ltap~~~~~~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlr 308 (790)
T KOG0056|consen 229 LINVSLPILSKWIVDELTAPDTFQYSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLR 308 (790)
T ss_pred HHhhhhHHhHHHHHHhhcCcchhhHHHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhcee
Confidence 3344444444444432 222223334445555433 34667778888888889999999999999999999999
Q ss_pred cccccCcchhHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 977 FFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMS-QAAWQVFPLFLVILGISIWYQAYYITTARELA 1055 (1333)
Q Consensus 977 fFd~tp~GrIlnRfs~Di~~vd~~l~~~l~~~~~~~~~~l~~ivv~~-~~~~~l~lv~ipl~~~~~~~~~~y~~~srel~ 1055 (1333)
|.-...+|+.+.-+.+-.+.+. .+.....++...++-+...++..+ ..+|++.+++..+..+|.+.......--.+.+
T Consensus 309 wHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~r 387 (790)
T KOG0056|consen 309 WHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKAR 387 (790)
T ss_pred eeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHH
Confidence 9999999998888877777666 555555555555555555555433 46788888777766666543322111112233
Q ss_pred HHHhHhhchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh
Q 000720 1056 RMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIIL-VT 1134 (1333)
Q Consensus 1056 rl~~~~~spl~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~ll~~~~~~~~~~~~-~~ 1134 (1333)
|....+...-.+.-.+++-+-.|+|-|++|+...++|.+.++.+++.-++....-..+...-+.+.++......++. ..
T Consensus 388 R~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~ 467 (790)
T KOG0056|consen 388 RKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYR 467 (790)
T ss_pred HHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeeee
Confidence 33334444445667899999999999999999999999999999998887776666665555554444333222222 22
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCcccCCCCCCCCCCCcccEEEEEEE
Q 000720 1135 LPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLL 1214 (1333)
Q Consensus 1135 ~~~~~~~~g~~gl~l~y~l~l~~~l~~~v~~~~~le~~~~SveRI~~~~~~p~E~~~~~~~~~~~~~wp~~G~I~f~nVs 1214 (1333)
...+..+.|...+..+|.+++.++++|+-..+..++++.+-.||+.+.++.++|- .+.+..++---.+|.|+|+||+
T Consensus 468 Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eV---vd~P~a~pl~~~~G~i~fsnvt 544 (790)
T KOG0056|consen 468 VTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEV---VDLPGAPPLKVTQGKIEFSNVT 544 (790)
T ss_pred eeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchh---hcCCCCCCccccCCeEEEEEeE
Confidence 2345677888889999999999999999999999999999999999998755543 2322233333457999999999
Q ss_pred EEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeEecccccc
Q 000720 1215 VQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPML 1294 (1333)
Q Consensus 1215 f~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isiVpQdp~L 1294 (1333)
|.|.|+.| ||+||||+++||+.||+||+||+||||++.+||||||.++|+|.|||+||+.+..++||++||+||||.+|
T Consensus 545 F~Y~p~k~-vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvL 623 (790)
T KOG0056|consen 545 FAYDPGKP-VLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVL 623 (790)
T ss_pred EecCCCCc-eeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCccee
Confidence 99999876 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhcCCCC-CCCHHHHHHHHHhCCCCcccccCC
Q 000720 1295 FQGTVRTNLDPLE-QHSDQEIWEVKISKLLTHKSYQCE 1331 (1333)
Q Consensus 1295 F~GTIR~NLdp~~-~~sDeeI~~aL~~~~L~~~~~~~~ 1331 (1333)
|++||.+||.+.. .++|||+.+|.+.+++.|...+-|
T Consensus 624 FNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fP 661 (790)
T KOG0056|consen 624 FNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFP 661 (790)
T ss_pred ecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCc
Confidence 9999999998764 599999999999999999877755
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-45 Score=461.81 Aligned_cols=206 Identities=21% Similarity=0.338 Sum_probs=162.4
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--------
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g-------- 659 (1333)
..++++|++++|.... ...+.+++ ||++++||+++|+||||||||||+++|+|+++|.+|.+ .++|
T Consensus 11 ~~l~v~~l~~~y~~~~----~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i-~~~g~~~~~~~~ 85 (623)
T PRK10261 11 DVLAVENLNIAFMQEQ----QKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLV-QCDKMLLRRRSR 85 (623)
T ss_pred ceEEEeceEEEecCCC----CceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEE-EECCEEeccccc
Confidence 4699999999996430 12468999 99999999999999999999999999999999999975 3322
Q ss_pred -------------------eEEEEcCCC--CC-CCCCHHHHhccCCcC----CH----HHHHHHHHHcccchHHHhhcCC
Q 000720 660 -------------------KKAYVPQSS--WI-QTGTIRENILFGKDM----RQ----SFYEEVLEGCALNQDIEMWADG 709 (1333)
Q Consensus 660 -------------------~iayv~Q~~--~i-~~~Tv~enI~~g~~~----~~----~~~~~v~~~~~l~~d~~~~~~g 709 (1333)
++|||+|+| .+ +..||+||+.++... .. ++..++++..++.+.
T Consensus 86 ~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~------- 158 (623)
T PRK10261 86 QVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEA------- 158 (623)
T ss_pred cccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh-------
Confidence 489999998 34 457999999875321 11 122233333333110
Q ss_pred CccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hC-CCeEEEecCchhhhh-cC
Q 000720 710 DLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LS-QKTVLYTTHQLEFLD-AA 786 (1333)
Q Consensus 710 ~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~-~~-~~TvIlvtH~~~~l~-~a 786 (1333)
.....+++.+|||||||||+|||||+.+|+++||||||++||+.+++.+.+. ++.+ .+ |+|||+||||++.+. .|
T Consensus 159 -~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~l-l~~l~~~~g~tvi~itHdl~~~~~~a 236 (623)
T PRK10261 159 -QTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQL-IKVLQKEMSMGVIFITHDMGVVAEIA 236 (623)
T ss_pred -hhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHH-HHHHHHhcCCEEEEEcCCHHHHHHhC
Confidence 1224567889999999999999999999999999999999999998888764 4444 33 799999999999875 49
Q ss_pred CEEEEEeCCeEEEccChHHHHh
Q 000720 787 DLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 787 D~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
|+|++|++|++++.|+++++..
T Consensus 237 dri~vl~~G~i~~~g~~~~~~~ 258 (623)
T PRK10261 237 DRVLVMYQGEAVETGSVEQIFH 258 (623)
T ss_pred CEEEEeeCCeecccCCHHHhhc
Confidence 9999999999999998877643
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-45 Score=452.48 Aligned_cols=197 Identities=20% Similarity=0.294 Sum_probs=155.7
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcC--CCCcEEEECC-------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR--ISGAAIKVHG------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~--~~G~~i~~~g------- 659 (1333)
.++++|++++|+. .+++++ ||++++||+++|+||||||||||+++|+|+++| ++|++ .++|
T Consensus 5 ~l~~~nl~~~~~~--------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i-~~~g~~~~~~~ 75 (506)
T PRK13549 5 LLEMKNITKTFGG--------VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEI-IFEGEELQASN 75 (506)
T ss_pred eEEEeeeEEEeCC--------eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEE-EECCEECCCCC
Confidence 5899999999953 368999 999999999999999999999999999999986 78986 5554
Q ss_pred -------eEEEEcCCCCCC-CCCHHHHhccCCcC------CHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHH
Q 000720 660 -------KKAYVPQSSWIQ-TGTIRENILFGKDM------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1333)
Q Consensus 660 -------~iayv~Q~~~i~-~~Tv~enI~~g~~~------~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQ 725 (1333)
.++|++|++.++ +.|++||+.++... +.+...+.++ +-++.+ |.....+.+..+|||||
T Consensus 76 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~--~l~~~~~~~~~~LSgGq 148 (506)
T PRK13549 76 IRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQ-----KLLAQL--KLDINPATPVGNLGLGQ 148 (506)
T ss_pred HHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHH-----HHHHHc--CCCCCcccchhhCCHHH
Confidence 389999998655 56999999987432 1111111111 111111 11123356778999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEccC
Q 000720 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGK 802 (1333)
Q Consensus 726 kqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~ 802 (1333)
|||++||||++.+|+++||||||++||+..+..+.+.+.+...+++|+|++|||++++.. ||+|++|++|+++..|+
T Consensus 149 kqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 226 (506)
T PRK13549 149 QQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRP 226 (506)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecc
Confidence 999999999999999999999999999999888876544433468899999999999864 99999999999987654
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-44 Score=451.54 Aligned_cols=204 Identities=26% Similarity=0.376 Sum_probs=158.1
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcC-----CCCcEEEECC----
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG---- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~-----~~G~~i~~~g---- 659 (1333)
.++++|++++|+... ...+++++ ||++++||+++|+||||||||||+++|+|+++| ++|++ .++|
T Consensus 5 ~l~~~~l~~~~~~~~----~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i-~~~g~~i~ 79 (529)
T PRK15134 5 LLAIENLSVAFRQQQ----TVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDI-RFHGESLL 79 (529)
T ss_pred eEEEeceEEEecCCC----CceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEE-EECCEecc
Confidence 489999999996420 12468999 999999999999999999999999999999986 68875 4432
Q ss_pred -------------eEEEEcCCCC--C-CCCCHHHHhccCC----cCCH----HHHHHHHHHcccchHHHhhcCCCccccC
Q 000720 660 -------------KKAYVPQSSW--I-QTGTIRENILFGK----DMRQ----SFYEEVLEGCALNQDIEMWADGDLSVVG 715 (1333)
Q Consensus 660 -------------~iayv~Q~~~--i-~~~Tv~enI~~g~----~~~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig 715 (1333)
++||++|+|. + ...|++||+.++. .... ++.+++++.+++.+.. ....
T Consensus 80 ~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~--------~~~~ 151 (529)
T PRK15134 80 HASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAA--------KRLT 151 (529)
T ss_pred cCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--------HHHh
Confidence 4899999974 3 3469999987431 1111 2223344444442100 1124
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhh-cCCEEEEEe
Q 000720 716 ERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLD-AADLVLVMK 793 (1333)
Q Consensus 716 ~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~-~aD~i~vl~ 793 (1333)
+++.+|||||||||+|||||+.+|+++||||||++||+..++.+.+.+.+...+ ++|||+||||++.+. .||+|++|+
T Consensus 152 ~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~ 231 (529)
T PRK15134 152 DYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQ 231 (529)
T ss_pred hCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEE
Confidence 678899999999999999999999999999999999999988887644343333 799999999999886 499999999
Q ss_pred CCeEEEccChHHH
Q 000720 794 DGKIEQSGKYEDL 806 (1333)
Q Consensus 794 ~G~i~~~g~~~~l 806 (1333)
+|++++.|+++++
T Consensus 232 ~G~i~~~g~~~~~ 244 (529)
T PRK15134 232 NGRCVEQNRAATL 244 (529)
T ss_pred CCEEEEeCCHHHH
Confidence 9999988876554
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=434.23 Aligned_cols=422 Identities=14% Similarity=0.073 Sum_probs=326.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHhccccc-ccc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000720 897 LLCQVLFQALQMGSNYWIAWATDEKR-KVS---REQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFR 972 (1333)
Q Consensus 897 ll~~~l~~~~~~~~~~wl~~~~~~~~-~~~---~~~~l~vy~~l~~~~~i~~~~~~~~~~~~~~~~s~~L~~~ll~~il~ 972 (1333)
+++.++..++.+..++.++...|... ..+ ...++.+++++.++..++.+++.++....+.+...+++.++++++++
T Consensus 12 ~~~~~~~~~~~l~~p~~~~~iid~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~ 91 (544)
T TIGR01842 12 GLFSFVINILMLAPPLYMLQVYDRVLTSGSVPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIFAASFS 91 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33445555666666776665554211 111 12234445555566777888888899999999999999999999999
Q ss_pred CccccccccCcchhHHHHhccHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 973 APISFFDSTPSSRILNRCSTDQSTVDTDIPY-RLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTA 1051 (1333)
Q Consensus 973 ap~~fFd~tp~GrIlnRfs~Di~~vd~~l~~-~l~~~~~~~~~~l~~ivv~~~~~~~l~lv~ipl~~~~~~~~~~y~~~s 1051 (1333)
.|+. ..|..++++++|++.+++.+.. .+..++..++.++ .+++++..+|+++++++..+++.+.+..+..+..
T Consensus 92 ~~~~-----~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~li~l~~~~l~~~i~~~~~~~~ 165 (544)
T TIGR01842 92 ATLR-----RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPI-YLLVCFLLHPWIGILALGGAVVLVGLALLNNRAT 165 (544)
T ss_pred Cccc-----CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 9984 2367789999999999988776 4555555555444 3467788899887766555555555555555555
Q ss_pred HHHHHHHhHhhchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 1052 RELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLII 1131 (1333)
Q Consensus 1052 rel~rl~~~~~spl~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~ll~~~~~~~~~~~ 1131 (1333)
++..+...+..+...+++.|+++|+.+||+|+.|+++.+++.+..++..+.................++..+...++..+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (544)
T TIGR01842 166 KKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLGL 245 (544)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666677788889999999999999999999999999999999988877776655555544444444443332222222
Q ss_pred H-HhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCcccCCCCCCCCCCCcccEEE
Q 000720 1132 L-VTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIEL 1210 (1333)
Q Consensus 1132 ~-~~~~~~~~~~g~~gl~l~y~l~l~~~l~~~v~~~~~le~~~~SveRI~~~~~~p~E~~~~~~~~~~~~~wp~~G~I~f 1210 (1333)
+ .....+.+++|.+..++.+...+..++..+...+.++.....+.+|+.++++.|+|.+. ....+ +..+.|+|
T Consensus 246 g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~---~~~~~---~~~~~i~~ 319 (544)
T TIGR01842 246 GAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDP---AMPLP---EPEGHLSV 319 (544)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccC---CCCCC---CCCCeEEE
Confidence 2 22346778999888888888888889999999999999999999999999987655321 11111 23578999
Q ss_pred EEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeEecc
Q 000720 1211 ENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQ 1290 (1333)
Q Consensus 1211 ~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isiVpQ 1290 (1333)
+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|.|+++|++|+|.+||+|+.+++.+++|+++++|||
T Consensus 320 ~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q 399 (544)
T TIGR01842 320 ENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQ 399 (544)
T ss_pred EEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecC
Confidence 99999997655569999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccchhhhcCCCC-CCCHHHHHHHHHhCCCCcccccC
Q 000720 1291 DPMLFQGTVRTNLDPLE-QHSDQEIWEVKISKLLTHKSYQC 1330 (1333)
Q Consensus 1291 dp~LF~GTIR~NLdp~~-~~sDeeI~~aL~~~~L~~~~~~~ 1330 (1333)
||++|+|||||||..++ +++|++++++++++++++...+.
T Consensus 400 ~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l 440 (544)
T TIGR01842 400 DVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRL 440 (544)
T ss_pred CcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhC
Confidence 99999999999998654 48999999999999988765443
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=463.73 Aligned_cols=201 Identities=23% Similarity=0.349 Sum_probs=166.7
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--------
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g-------- 659 (1333)
..|+++|+++.|+.+ .+.++++ |+++++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 927 ~~L~I~nLsK~y~~~------~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I-~i~G~dI~~~~~ 999 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPS------GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTV-LVGGKDIETNLD 999 (2272)
T ss_pred ceEEEEeEEEEecCC------CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEE-EECCEECcchHH
Confidence 469999999999632 2468999 99999999999999999999999999999999999986 6655
Q ss_pred ----eEEEEcCCCCCC-CCCHHHHhccCCcC---CH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHH
Q 000720 660 ----KKAYVPQSSWIQ-TGTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (1333)
Q Consensus 660 ----~iayv~Q~~~i~-~~Tv~enI~~g~~~---~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkq 727 (1333)
.+|||||++.++ ..||+||+.|+... .. ++.++.++.+++. ...+++..+|||||||
T Consensus 1000 ~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~-----------~~~~~~~~~LSGGqKQ 1068 (2272)
T TIGR01257 1000 AVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLH-----------HKRNEEAQDLSGGMQR 1068 (2272)
T ss_pred HHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-----------hhhcCChhhCCHHHHH
Confidence 379999998765 56999999875321 11 1223333333332 2335678899999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChHHH
Q 000720 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDL 806 (1333)
Q Consensus 728 Rv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~~l 806 (1333)
|++||||++.+|+++||||||+|||+..++++.+.+ +...+|+|||++||+++.++. ||+|++|++|+++..|+.+++
T Consensus 1069 RLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL-~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~L 1147 (2272)
T TIGR01257 1069 KLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLL-LKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFL 1147 (2272)
T ss_pred HHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHH-HHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999999999999988887654 444578999999999999865 999999999999999999988
Q ss_pred Hh
Q 000720 807 IA 808 (1333)
Q Consensus 807 ~~ 808 (1333)
.+
T Consensus 1148 k~ 1149 (2272)
T TIGR01257 1148 KN 1149 (2272)
T ss_pred HH
Confidence 65
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-44 Score=447.25 Aligned_cols=192 Identities=22% Similarity=0.357 Sum_probs=152.2
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcC--CCCcEEEECC--------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR--ISGAAIKVHG-------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~--~~G~~i~~~g-------- 659 (1333)
++++|++++|+. .+++++ ||++++||+++|+||||||||||+++|+|+.+| ++|++ .++|
T Consensus 2 l~i~~l~~~~~~--------~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i-~~~g~~~~~~~~ 72 (500)
T TIGR02633 2 LEMKGIVKTFGG--------VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEI-YWSGSPLKASNI 72 (500)
T ss_pred EEEEeEEEEeCC--------eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEE-EECCEECCCCCH
Confidence 688999999953 358999 999999999999999999999999999999986 78986 5554
Q ss_pred ------eEEEEcCCCCCC-CCCHHHHhccCCcC-------CHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCC
Q 000720 660 ------KKAYVPQSSWIQ-TGTIRENILFGKDM-------RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1333)
Q Consensus 660 ------~iayv~Q~~~i~-~~Tv~enI~~g~~~-------~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~L 721 (1333)
.++|++|++.++ +.|++||+.++... +.+ +.+++++.+++... ....+..+|
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~L 142 (500)
T TIGR02633 73 RDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDAD----------NVTRPVGDY 142 (500)
T ss_pred HHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCC----------cccCchhhC
Confidence 389999998654 56999999886432 111 11222222222100 012457899
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEc
Q 000720 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQS 800 (1333)
Q Consensus 722 SGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~ 800 (1333)
|||||||++||||++.+|+++||||||++||+...+.+.+.+.+...+|+|||++|||++++.. ||+|++|++|+++..
T Consensus 143 SgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~ 222 (500)
T TIGR02633 143 GGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVAT 222 (500)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeee
Confidence 9999999999999999999999999999999999888877544433457899999999999865 999999999998754
Q ss_pred c
Q 000720 801 G 801 (1333)
Q Consensus 801 g 801 (1333)
|
T Consensus 223 ~ 223 (500)
T TIGR02633 223 K 223 (500)
T ss_pred c
Confidence 3
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-44 Score=445.35 Aligned_cols=193 Identities=22% Similarity=0.316 Sum_probs=155.5
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|++++|+. .+++++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 4 ~i~~~~l~~~~~~--------~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i-~~~g~~~~~~~~~ 74 (501)
T PRK10762 4 LLQLKGIDKAFPG--------VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSI-LYLGKEVTFNGPK 74 (501)
T ss_pred eEEEeeeEEEeCC--------eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEECCCCCHH
Confidence 4889999999953 358999 99999999999999999999999999999999999986 5554
Q ss_pred -----eEEEEcCCCCCC-CCCHHHHhccCCcC-------CHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCCC
Q 000720 660 -----KKAYVPQSSWIQ-TGTIRENILFGKDM-------RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1333)
Q Consensus 660 -----~iayv~Q~~~i~-~~Tv~enI~~g~~~-------~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LS 722 (1333)
.++|++|++.++ +.|++||+.++... +.. +.++.++.+++. ...+.+..+||
T Consensus 75 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS 143 (501)
T PRK10762 75 SSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLR-----------FSSDKLVGELS 143 (501)
T ss_pred HHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCC-----------CCccCchhhCC
Confidence 379999998654 56999999986432 111 112222222221 12346778999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEcc
Q 000720 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1333)
Q Consensus 723 GGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g 801 (1333)
||||||++||||++.+|+++||||||++||+.++..+.+.+.+...+++|+|++|||++++.. ||+|++|++|+++..|
T Consensus 144 gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~ 223 (501)
T PRK10762 144 IGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAER 223 (501)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEec
Confidence 999999999999999999999999999999999888876444433457899999999999864 9999999999998755
Q ss_pred C
Q 000720 802 K 802 (1333)
Q Consensus 802 ~ 802 (1333)
+
T Consensus 224 ~ 224 (501)
T PRK10762 224 E 224 (501)
T ss_pred C
Confidence 4
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-44 Score=427.11 Aligned_cols=205 Identities=26% Similarity=0.347 Sum_probs=161.2
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCC----CCcEEEECC-----
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI----SGAAIKVHG----- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~----~G~~i~~~g----- 659 (1333)
-++++|.+.+|.... .....++| ||++.+||++||+|++||||||+.++|.|++++. +|++ .++|
T Consensus 5 lL~V~nL~v~~~~~~----~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I-~~~g~dl~~ 79 (539)
T COG1123 5 LLEVENLTVEFATDG----GRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEV-ILDGRDLLG 79 (539)
T ss_pred eEEEeceEEEEecCC----cceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEE-EECCcchhc
Confidence 688999998887651 22468999 9999999999999999999999999999999876 6775 4444
Q ss_pred ------------eEEEEcCCCC-CC--CCCHHHHhcc----CCcC-CHHH---HHHHHHHcccchHHHhhcCCCccccCC
Q 000720 660 ------------KKAYVPQSSW-IQ--TGTIRENILF----GKDM-RQSF---YEEVLEGCALNQDIEMWADGDLSVVGE 716 (1333)
Q Consensus 660 ------------~iayv~Q~~~-i~--~~Tv~enI~~----g~~~-~~~~---~~~v~~~~~l~~d~~~~~~g~~t~ig~ 716 (1333)
++||+||+|+ .+ -.||.+-|.= .... .++. -.+.++..++.+... . +.
T Consensus 80 l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~-------~--~~ 150 (539)
T COG1123 80 LSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPER-------R--DR 150 (539)
T ss_pred CCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhh-------h--cc
Confidence 4799999985 23 3577666642 2211 1222 223334444432211 1 46
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEecCchhhhhc-CCEEEEEeC
Q 000720 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDA-ADLVLVMKD 794 (1333)
Q Consensus 717 ~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~-~~~~TvIlvtH~~~~l~~-aD~i~vl~~ 794 (1333)
.+.+||||||||+.||+||+.+|+++|+||||+|||+.++.+|.+.+.... ..|.++|+||||++.+.+ ||+|+||++
T Consensus 151 yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~ 230 (539)
T COG1123 151 YPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYK 230 (539)
T ss_pred CCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEEC
Confidence 789999999999999999999999999999999999999999987544333 247899999999999865 999999999
Q ss_pred CeEEEccChHHHHh
Q 000720 795 GKIEQSGKYEDLIA 808 (1333)
Q Consensus 795 G~i~~~g~~~~l~~ 808 (1333)
|++++.|+.+++++
T Consensus 231 G~iVE~G~~~~i~~ 244 (539)
T COG1123 231 GEIVETGPTEEILS 244 (539)
T ss_pred CEEEEecCHHHHHh
Confidence 99999999999986
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-44 Score=448.25 Aligned_cols=193 Identities=23% Similarity=0.343 Sum_probs=152.7
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCC--cCCCCcEEEEC---------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEI--PRISGAAIKVH--------- 658 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~--~~~~G~~i~~~--------- 658 (1333)
++++|++++|+. .+++++ ||++++||+++|+||||||||||+++|+|+. +|++|++ .++
T Consensus 1 l~~~~l~~~~~~--------~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i-~~~~~~~~~~~~ 71 (520)
T TIGR03269 1 IEVKNLTKKFDG--------KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRI-IYHVALCEKCGY 71 (520)
T ss_pred CEEEEEEEEECC--------eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEE-EEeccccccccc
Confidence 468899999853 358999 9999999999999999999999999999997 6899986 442
Q ss_pred -------------------------------------CeEEEEcCC-CCCC-CCCHHHHhccCCc---CCH----HHHHH
Q 000720 659 -------------------------------------GKKAYVPQS-SWIQ-TGTIRENILFGKD---MRQ----SFYEE 692 (1333)
Q Consensus 659 -------------------------------------g~iayv~Q~-~~i~-~~Tv~enI~~g~~---~~~----~~~~~ 692 (1333)
..++|++|+ +.++ ..|++||+.++.. ... ++..+
T Consensus 72 ~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~ 151 (520)
T TIGR03269 72 VERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVD 151 (520)
T ss_pred cccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 137999997 4444 5699999987532 111 12233
Q ss_pred HHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCC
Q 000720 693 VLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQK 771 (1333)
Q Consensus 693 v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~ 771 (1333)
+++.+++.+ ..++++.+|||||||||+||||++.+|+++||||||++||+.+.+.+.+.+.+... .++
T Consensus 152 ~l~~~gl~~-----------~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~ 220 (520)
T TIGR03269 152 LIEMVQLSH-----------RITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGI 220 (520)
T ss_pred HHHHcCChh-----------hhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCc
Confidence 344444321 22456789999999999999999999999999999999999998888765444333 378
Q ss_pred eEEEecCchhhhhc-CCEEEEEeCCeEEEccCh
Q 000720 772 TVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKY 803 (1333)
Q Consensus 772 TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~ 803 (1333)
|||+||||++++.. ||+|++|++|+++..|++
T Consensus 221 tviivtHd~~~~~~~~d~i~~l~~G~i~~~g~~ 253 (520)
T TIGR03269 221 SMVLTSHWPEVIEDLSDKAIWLENGEIKEEGTP 253 (520)
T ss_pred EEEEEeCCHHHHHHhcCEEEEEeCCEEeeecCH
Confidence 99999999999864 999999999998765543
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-44 Score=442.01 Aligned_cols=197 Identities=26% Similarity=0.386 Sum_probs=161.7
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|++++|+. ..++++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 11 ~l~~~~l~~~~~~--------~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~ 81 (510)
T PRK15439 11 LLCARSISKQYSG--------VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTL-EIGGNPCARLTPA 81 (510)
T ss_pred eEEEEeEEEEeCC--------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEECCCCCHH
Confidence 5999999999963 358999 99999999999999999999999999999999999986 6654
Q ss_pred -----eEEEEcCCCCCC-CCCHHHHhccCCcCCH---HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHH
Q 000720 660 -----KKAYVPQSSWIQ-TGTIRENILFGKDMRQ---SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1333)
Q Consensus 660 -----~iayv~Q~~~i~-~~Tv~enI~~g~~~~~---~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~ 730 (1333)
.++|++|++.++ +.|++||+.++..... ++.++.++..++. ...+.+..+||||||||++
T Consensus 82 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgG~~qrv~ 150 (510)
T PRK15439 82 KAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQ-----------LDLDSSAGSLEVADRQIVE 150 (510)
T ss_pred HHHhCCEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCC-----------ccccCChhhCCHHHHHHHH
Confidence 379999998755 5699999998753222 2223333333332 1234677899999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeEEEccChHHH
Q 000720 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDL 806 (1333)
Q Consensus 731 LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~~~~l 806 (1333)
|||||+.+|+++||||||++||+...+.+.+.+.+...+|+|||++|||++++. .||+|++|++|++++.|+++++
T Consensus 151 la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (510)
T PRK15439 151 ILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADL 227 (510)
T ss_pred HHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHc
Confidence 999999999999999999999999988887754443345899999999999985 4999999999999988876554
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=442.25 Aligned_cols=204 Identities=18% Similarity=0.271 Sum_probs=156.4
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--eEEEEcCC
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVPQS 667 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--~iayv~Q~ 667 (1333)
|+++|++++|+. .+++++ ||+|++||+++|+||||||||||+++|+|+++|++|++ .+++ +++|++|+
T Consensus 2 l~i~~ls~~~~~--------~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i-~~~~~~~i~~~~q~ 72 (530)
T PRK15064 2 LSTANITMQFGA--------KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNV-SLDPNERLGKLRQD 72 (530)
T ss_pred EEEEEEEEEeCC--------cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EecCCCEEEEEecc
Confidence 688999999953 368999 99999999999999999999999999999999999996 6654 69999999
Q ss_pred CCCC-CCCHHHHhccCCcC-CH-------------------HHHHHHHHH-c---------ccchHHHhhcCCCccc-cC
Q 000720 668 SWIQ-TGTIRENILFGKDM-RQ-------------------SFYEEVLEG-C---------ALNQDIEMWADGDLSV-VG 715 (1333)
Q Consensus 668 ~~i~-~~Tv~enI~~g~~~-~~-------------------~~~~~v~~~-~---------~l~~d~~~~~~g~~t~-ig 715 (1333)
+.++ +.|++||+.++... .. ..+.+..+. + ...+-++.+ |.... ..
T Consensus 73 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~ 150 (530)
T PRK15064 73 QFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGV--GIPEEQHY 150 (530)
T ss_pred CCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhC--CCChhHhc
Confidence 7654 56999999875310 00 000000000 0 000001111 11111 12
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeC
Q 000720 716 ERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKD 794 (1333)
Q Consensus 716 ~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~ 794 (1333)
....+||||||||++||||++.+|+++||||||++||+...+.+.+. +. ..++|||+||||++++.. ||+|++|++
T Consensus 151 ~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~-l~--~~~~tiiivsHd~~~~~~~~d~i~~l~~ 227 (530)
T PRK15064 151 GLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDV-LN--ERNSTMIIISHDRHFLNSVCTHMADLDY 227 (530)
T ss_pred CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHH-HH--hCCCeEEEEeCCHHHHHhhcceEEEEeC
Confidence 45789999999999999999999999999999999999998877664 33 247899999999999865 999999999
Q ss_pred CeE-EEccChHHHHh
Q 000720 795 GKI-EQSGKYEDLIA 808 (1333)
Q Consensus 795 G~i-~~~g~~~~l~~ 808 (1333)
|++ .+.|+++++.+
T Consensus 228 g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 228 GELRVYPGNYDEYMT 242 (530)
T ss_pred CEEEEecCCHHHHHH
Confidence 999 47899888764
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-44 Score=441.72 Aligned_cols=196 Identities=21% Similarity=0.297 Sum_probs=158.4
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
-++++|++++|+.. .+|++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 3 ~l~~~~l~~~~~~~--------~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i-~~~~~~~~~~~~~ 73 (490)
T PRK10938 3 SLQISQGTFRLSDT--------KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGER-QSQFSHITRLSFE 73 (490)
T ss_pred eEEEEeEEEEcCCe--------eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceE-EECCcccccCCHH
Confidence 37899999999643 48999 99999999999999999999999999999999999986 5543
Q ss_pred ----eEEEEcCCCCC---------CCCCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHH
Q 000720 660 ----KKAYVPQSSWI---------QTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1333)
Q Consensus 660 ----~iayv~Q~~~i---------~~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQk 726 (1333)
.++|++|++.. +..|++||+.++.. ..++.++.++..++.+ ..+.++.+||||||
T Consensus 74 ~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~~ 141 (490)
T PRK10938 74 QLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVK-DPARCEQLAQQFGITA-----------LLDRRFKYLSTGET 141 (490)
T ss_pred HHHHHhceeccCcchhhcccchhhccccHHHhcccchh-HHHHHHHHHHHcCCHh-----------hhhCCcccCCHHHH
Confidence 26899998642 14589999876421 2233444555444421 22467789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChHH
Q 000720 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYED 805 (1333)
Q Consensus 727 qRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~~ 805 (1333)
||++||||++.+|+++||||||++||+...+.+.+.+.+...+|+|+|++||+++.+.. ||+|++|++|+++..|++++
T Consensus 142 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 221 (490)
T PRK10938 142 RKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREE 221 (490)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999888877554433457899999999998865 99999999999998877655
Q ss_pred H
Q 000720 806 L 806 (1333)
Q Consensus 806 l 806 (1333)
+
T Consensus 222 ~ 222 (490)
T PRK10938 222 I 222 (490)
T ss_pred H
Confidence 4
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-42 Score=397.53 Aligned_cols=390 Identities=19% Similarity=0.224 Sum_probs=313.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCcchhHHHHhccHHHHHhHHHHHHHHHHHHHHHH
Q 000720 936 LSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQL 1015 (1333)
Q Consensus 936 l~~~~~i~~~~~~~~~~~~~~~~s~~L~~~ll~~il~ap~~fFd~tp~GrIlnRfs~Di~~vd~~l~~~l~~~~~~~~~~ 1015 (1333)
+++...+.-++-.+..+....++-.++|.++|+++...+..-..+...|+++||+..|++.+|+..=..+.-.+..+...
T Consensus 67 ~aI~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~ 146 (573)
T COG4987 67 LAILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLI 146 (573)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHH
Confidence 45555555666666777888999999999999999999999999999999999999999999999888888888888888
Q ss_pred HHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHhhchHHHHHHHHhcchHHHHhcccHHHHHHHHHH
Q 000720 1016 LSIIILMSQAAWQVFPLFL-VILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHS 1094 (1333)
Q Consensus 1016 l~~ivv~~~~~~~l~lv~i-pl~~~~~~~~~~y~~~srel~rl~~~~~spl~~~~~Etl~G~~tIRaf~~e~~f~~~~~~ 1094 (1333)
++..+.+.+.+|++.+.+. .++.+.+.+...+.+..|...+.-...++.+.+++.|-++|....+.||+++++.+.+.+
T Consensus 147 ~~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~ 226 (573)
T COG4987 147 AVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEA 226 (573)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHH
Confidence 8888888888888766543 344444455555666777777777888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 000720 1095 LIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLV-LIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVI-WNLCNVENK 1172 (1333)
Q Consensus 1095 ~~d~~~~~~~~~~~~~~wl~~rl~ll~~~~~~~~-~~~~~~~~~~~~~~g~~gl~l~y~l~l~~~l~~~v-~~~~~le~~ 1172 (1333)
.-+...+..........|-...+.++.++.+... ++.......|..+...+.+++.-.+.....+.-+. ..+.++...
T Consensus 227 ~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~ 306 (573)
T COG4987 227 TEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQV 306 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHH
Confidence 9999999999999999999999999888766633 33333233343332112122111122222222222 345677888
Q ss_pred hhHHHHHHHhhcCCCCCCcccCCCCCCCCCCCcc-cEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHH
Q 000720 1173 MISVERILQFTNIPSEAPLVIKNSRPSPEWPSSG-KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTL 1251 (1333)
Q Consensus 1173 ~~SveRI~~~~~~p~E~~~~~~~~~~~~~wp~~G-~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTL 1251 (1333)
..|.+|+.+..+.++|.... . +.-|..| .++++||+|+|+.+.++||+|+||++++||||||+|||||||||+
T Consensus 307 ~~Sa~Rl~~i~~q~~e~~~~---~---~~~~~~~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTl 380 (573)
T COG4987 307 IASARRLNDILDQKPEVTFP---D---EQTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTL 380 (573)
T ss_pred HHHHHHHhhhccCCcccCCC---c---cccCCccceeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHH
Confidence 89999999988766664321 1 1112222 799999999999888889999999999999999999999999999
Q ss_pred HHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeEecccccccccchhhhcCCC-CCCCHHHHHHHHHhCCCCcccccC
Q 000720 1252 IQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPL-EQHSDQEIWEVKISKLLTHKSYQC 1330 (1333)
Q Consensus 1252 i~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isiVpQdp~LF~GTIR~NLdp~-~~~sDeeI~~aL~~~~L~~~~~~~ 1330 (1333)
+++|.|-|+|++|+|..+|+|++.++-+++|..|++++|.+.||+||+|+||... .++||||+|+||++++|.+...+.
T Consensus 381 lqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~ 460 (573)
T COG4987 381 LQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESA 460 (573)
T ss_pred HHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999754 469999999999999999887665
Q ss_pred C
Q 000720 1331 E 1331 (1333)
Q Consensus 1331 ~ 1331 (1333)
|
T Consensus 461 p 461 (573)
T COG4987 461 P 461 (573)
T ss_pred h
Confidence 3
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-43 Score=440.00 Aligned_cols=207 Identities=26% Similarity=0.377 Sum_probs=158.8
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEEC--CeEEEEcC
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH--GKKAYVPQ 666 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~--g~iayv~Q 666 (1333)
.++++|++++|+.+ .+++++ ||+|++|++++|+||||||||||+++|+|+++|++|++ .++ .++||++|
T Consensus 6 ~l~i~~l~~~y~~~-------~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i-~~~~~~~i~~v~Q 77 (556)
T PRK11819 6 IYTMNRVSKVVPPK-------KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEA-RPAPGIKVGYLPQ 77 (556)
T ss_pred EEEEeeEEEEeCCC-------CeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EecCCCEEEEEec
Confidence 58999999999622 368999 99999999999999999999999999999999999986 554 47999999
Q ss_pred CCCCCC-CCHHHHhccCCc-CCH--H---------------------HHHHHHHHc---c---cchHHHh-hc-CCCccc
Q 000720 667 SSWIQT-GTIRENILFGKD-MRQ--S---------------------FYEEVLEGC---A---LNQDIEM-WA-DGDLSV 713 (1333)
Q Consensus 667 ~~~i~~-~Tv~enI~~g~~-~~~--~---------------------~~~~v~~~~---~---l~~d~~~-~~-~g~~t~ 713 (1333)
+|.+++ .|++||+.++.. +.. . .+.++.+.+ . ....++. +. .|- ..
T Consensus 78 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl-~~ 156 (556)
T PRK11819 78 EPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRC-PP 156 (556)
T ss_pred CCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCC-Cc
Confidence 998764 599999987631 000 0 000000000 0 0001110 00 111 12
Q ss_pred cCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEE
Q 000720 714 VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVM 792 (1333)
Q Consensus 714 ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl 792 (1333)
.+.+..+|||||||||+||||++.+|+++||||||++||+...+.+.+ +++.. +.|||+||||++++.. ||+|++|
T Consensus 157 ~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~-~L~~~--~~tviiisHd~~~~~~~~d~i~~l 233 (556)
T PRK11819 157 WDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQ-FLHDY--PGTVVAVTHDRYFLDNVAGWILEL 233 (556)
T ss_pred ccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHH-HHHhC--CCeEEEEeCCHHHHHhhcCeEEEE
Confidence 356788999999999999999999999999999999999999887765 44443 3599999999999865 9999999
Q ss_pred eCCeEE-EccChHHHHh
Q 000720 793 KDGKIE-QSGKYEDLIA 808 (1333)
Q Consensus 793 ~~G~i~-~~g~~~~l~~ 808 (1333)
++|+++ +.|+++++.+
T Consensus 234 ~~g~i~~~~g~~~~~~~ 250 (556)
T PRK11819 234 DRGRGIPWEGNYSSWLE 250 (556)
T ss_pred eCCEEEEecCCHHHHHH
Confidence 999986 7888887754
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-43 Score=437.78 Aligned_cols=207 Identities=26% Similarity=0.381 Sum_probs=161.2
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEEC--CeEEEEcC
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH--GKKAYVPQ 666 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~--g~iayv~Q 666 (1333)
-++++|++++|+.+ .+++++ ||++++|++++|+||||||||||+++|+|+.+|++|++ .++ .++||++|
T Consensus 4 ~i~~~nls~~~~~~-------~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i-~~~~~~~i~~v~Q 75 (552)
T TIGR03719 4 IYTMNRVSKVVPPK-------KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEA-RPAPGIKVGYLPQ 75 (552)
T ss_pred EEEEeeEEEecCCC-------CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EecCCCEEEEEec
Confidence 58899999999622 368999 99999999999999999999999999999999999986 554 46999999
Q ss_pred CCCCC-CCCHHHHhccCCcC------------------CH---------HHHHHHHHHcccc---hHHHh-hc-CCCccc
Q 000720 667 SSWIQ-TGTIRENILFGKDM------------------RQ---------SFYEEVLEGCALN---QDIEM-WA-DGDLSV 713 (1333)
Q Consensus 667 ~~~i~-~~Tv~enI~~g~~~------------------~~---------~~~~~v~~~~~l~---~d~~~-~~-~g~~t~ 713 (1333)
+|+++ +.|++||+.++... +. ....+.++.++.. ..+.. +. .|. ..
T Consensus 76 ~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~ 154 (552)
T TIGR03719 76 EPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRC-PP 154 (552)
T ss_pred cCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCC-Cc
Confidence 99875 56999999875321 00 0122223333321 11111 11 111 12
Q ss_pred cCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEE
Q 000720 714 VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVM 792 (1333)
Q Consensus 714 ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl 792 (1333)
.+.++.+||||||||++||||++.+|+++||||||++||+++.+.+.+. ++.. ++|+|+||||++++.. ||++++|
T Consensus 155 ~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~-L~~~--~~tvIiisHd~~~~~~~~d~v~~l 231 (552)
T TIGR03719 155 WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQH-LQEY--PGTVVAVTHDRYFLDNVAGWILEL 231 (552)
T ss_pred ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHH-HHhC--CCeEEEEeCCHHHHHhhcCeEEEE
Confidence 3567889999999999999999999999999999999999998877654 4333 3699999999999865 9999999
Q ss_pred eCCeEE-EccChHHHHh
Q 000720 793 KDGKIE-QSGKYEDLIA 808 (1333)
Q Consensus 793 ~~G~i~-~~g~~~~l~~ 808 (1333)
++|+++ ..|+++++.+
T Consensus 232 ~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 232 DRGRGIPWEGNYSSWLE 248 (552)
T ss_pred ECCEEEEecCCHHHHHH
Confidence 999975 7888888764
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=438.46 Aligned_cols=191 Identities=26% Similarity=0.335 Sum_probs=154.7
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|++++|+. .+++++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 4 ~l~~~~l~~~~~~--------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I-~~~g~~i~~~~~~ 74 (501)
T PRK11288 4 YLSFDGIGKTFPG--------VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSI-LIDGQEMRFASTT 74 (501)
T ss_pred eEEEeeeEEEECC--------EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEE-EECCEECCCCCHH
Confidence 5889999999963 258999 99999999999999999999999999999999999986 5543
Q ss_pred -----eEEEEcCCCCCCC-CCHHHHhccCCc------CCHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCCCh
Q 000720 660 -----KKAYVPQSSWIQT-GTIRENILFGKD------MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1333)
Q Consensus 660 -----~iayv~Q~~~i~~-~Tv~enI~~g~~------~~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSG 723 (1333)
.++|++|++.++. .|++||+.++.. .+.. +.++.++.+++. .....++.+|||
T Consensus 75 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSg 143 (501)
T PRK11288 75 AALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVD-----------IDPDTPLKYLSI 143 (501)
T ss_pred HHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCC-----------CCcCCchhhCCH
Confidence 4899999987654 699999998632 1111 122223322221 123467789999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEc
Q 000720 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQS 800 (1333)
Q Consensus 724 GQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~ 800 (1333)
|||||++||||++.+|+++||||||++||+.+.+.+.+.+.+...+|+|+|++|||++++.. ||+|++|++|+++..
T Consensus 144 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~ 221 (501)
T PRK11288 144 GQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVAT 221 (501)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEee
Confidence 99999999999999999999999999999999888877554433458999999999999855 999999999998753
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=400.02 Aligned_cols=397 Identities=17% Similarity=0.184 Sum_probs=331.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCcchhHHHHhccHHHHHhHHHHHHH
Q 000720 927 EQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLA 1006 (1333)
Q Consensus 927 ~~~l~vy~~l~~~~~i~~~~~~~~~~~~~~~~s~~L~~~ll~~il~ap~~fFd~tp~GrIlnRfs~Di~~vd~~l~~~l~ 1006 (1333)
..+++.+++..++..+....+.......+.++...+|.++++++.+.+..|-...|+|+..+.++.-++.++..+...++
T Consensus 40 ~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLP 119 (559)
T COG4988 40 LPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLP 119 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666777788888888888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhHhhchHHHHHHHHhcchHHHHhcc
Q 000720 1007 GLAFALIQLLSIIILMSQAAWQVFPLF---LVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFN 1083 (1333)
Q Consensus 1007 ~~~~~~~~~l~~ivv~~~~~~~l~lv~---ipl~~~~~~~~~~y~~~srel~rl~~~~~spl~~~~~Etl~G~~tIRaf~ 1083 (1333)
..+.+.+..+..++.+++.+|.-.+++ .|++|++.++ ....++...+..-.+...+.+||-+.+.|+.|+|+|+
T Consensus 120 q~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMil---vg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~ 196 (559)
T COG4988 120 QMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMIL---VGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFG 196 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhc
Confidence 999999999999999999999876654 5566655443 3445555666667777889999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccC-CCCChHHHHHHHHHHHHHHHHHHH
Q 000720 1084 QENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVT-LPR-SAIDPSLAGLAATYGLNLNVLQAW 1161 (1333)
Q Consensus 1084 ~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~ll~~~~~~~~~~~~~~-~~~-~~~~~g~~gl~l~y~l~l~~~l~~ 1161 (1333)
..+...++..+.-+++.+........+---+..+|++.++.++.+++.... +.. |.++...+-+++..+.-+..++..
T Consensus 197 ~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~ 276 (559)
T COG4988 197 RTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRD 276 (559)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHH
Confidence 999999999999999988888888887777888999998888777665433 223 345544444555666667777777
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhcCCCCCCcccCCCCCCCCCCCcccEEEEEEEEEECCCCCCccccceEEecCCcEEEEE
Q 000720 1162 VIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVV 1241 (1333)
Q Consensus 1162 ~v~~~~~le~~~~SveRI~~~~~~p~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIV 1241 (1333)
+-..+..-.+...+.|.+..+++.|.+.+... ......|-...+|+.+|++++|+++. ++++|+||+++||+++|||
T Consensus 277 lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~--~~~~~~~~~~~ei~~~~l~~~y~~g~-~~l~~l~~t~~~g~~talv 353 (559)
T COG4988 277 LGSFFHAAAAGEAAADKLFTLLESPVATPGSG--EKAEVANEPPIEISLENLSFRYPDGK-PALSDLNLTIKAGQLTALV 353 (559)
T ss_pred HHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCc--cccccccCCCceeeecceEEecCCCC-cccCCceeEecCCcEEEEE
Confidence 77777777788889999999998776644211 11122333344677779999997665 6999999999999999999
Q ss_pred CCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeEecccccccccchhhhcCCCC-CCCHHHHHHHHHh
Q 000720 1242 GRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLE-QHSDQEIWEVKIS 1320 (1333)
Q Consensus 1242 GrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isiVpQdp~LF~GTIR~NLdp~~-~~sDeeI~~aL~~ 1320 (1333)
|+||||||||+++|.|+.+|++|+|.+||+|.++++.+++|+++++|||+|++|+|||||||...+ +.|||||++|+++
T Consensus 354 G~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~ 433 (559)
T COG4988 354 GASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQ 433 (559)
T ss_pred CCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998765 4899999999999
Q ss_pred CCCCccccc
Q 000720 1321 KLLTHKSYQ 1329 (1333)
Q Consensus 1321 ~~L~~~~~~ 1329 (1333)
++|.+.+..
T Consensus 434 a~l~~~v~~ 442 (559)
T COG4988 434 AGLLEFVPK 442 (559)
T ss_pred hcHHHhhcC
Confidence 999998775
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=421.26 Aligned_cols=378 Identities=17% Similarity=0.185 Sum_probs=287.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCcchhHHHHhccHHHHHhHHHHHHHHHHHHHHHHH
Q 000720 937 SGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLL 1016 (1333)
Q Consensus 937 ~~~~~i~~~~~~~~~~~~~~~~s~~L~~~ll~~il~ap~~fFd~tp~GrIlnRfs~Di~~vd~~l~~~l~~~~~~~~~~l 1016 (1333)
.++..++.+++.++....+.+...++|.++++++++.|++||+++++|++++|+++|++.+...+. .+..++..++.++
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i 136 (547)
T PRK10522 58 LLLLMAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFV-RLPELVQGIILTL 136 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHH
Confidence 333345667788888899999999999999999999999999999999999999999999998665 4677788888899
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhchHHHHHHHHhcchHHHHhcccH---HHHHHHHH
Q 000720 1017 SIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQE---NRFLLRSH 1093 (1333)
Q Consensus 1017 ~~ivv~~~~~~~l~lv~ipl~~~~~~~~~~y~~~srel~rl~~~~~spl~~~~~Etl~G~~tIRaf~~e---~~f~~~~~ 1093 (1333)
+.++++++.+|+++++++..+++.+++..++.+..+...+...+..+...+++.|.++|+.+|+ ++.+ +++.+++.
T Consensus 137 ~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~ 215 (547)
T PRK10522 137 GSAAYLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYE 215 (547)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHh
Confidence 9999999999999988877777776666667776666666667788899999999999999995 5543 45677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000720 1094 SLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKM 1173 (1333)
Q Consensus 1094 ~~~d~~~~~~~~~~~~~~wl~~rl~ll~~~~~~~~~~~~~~~~~~~~~~g~~gl~l~y~l~l~~~l~~~v~~~~~le~~~ 1173 (1333)
+..++..+.................++....+.+..+..... +....+.++....+.+.+..++..+...+.++....
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~ 293 (547)
T PRK10522 216 PDAQEYRHHIIRADTFHLSAVNWSNIMMLGAIGLVFYMANSL--GWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQ 293 (547)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777766654443322211111111111111111111111101 112333344444444445566777788888999999
Q ss_pred hHHHHHHHhhcCCCCCCcccCCCCCCCCCCCcccEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHH
Q 000720 1174 ISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQ 1253 (1333)
Q Consensus 1174 ~SveRI~~~~~~p~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~ 1253 (1333)
.+.+|+.++.+.|+|++. ++..+. |..+.|+|+||+|+|+++ +++|+|+||+|+|||++||||+||||||||++
T Consensus 294 ~a~~ri~~l~~~~~~~~~--~~~~~~---~~~~~i~~~~v~f~y~~~-~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ 367 (547)
T PRK10522 294 VAFNKLNKLALAPYKAEF--PRPQAF---PDWQTLELRNVTFAYQDN-GFSVGPINLTIKRGELLFLIGGNGSGKSTLAM 367 (547)
T ss_pred HHHHHHHHHhcccccccc--cccccc---CcCceEEEEEEEEEeCCC-CeEEecceEEEcCCCEEEEECCCCCCHHHHHH
Confidence 999999999765543221 111111 123689999999999744 45999999999999999999999999999999
Q ss_pred HHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeEecccccccccchhhhcCCCCCCCHHHHHHHHHhCCCCccc
Q 000720 1254 ALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVKISKLLTHKS 1327 (1333)
Q Consensus 1254 lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isiVpQdp~LF~GTIR~NLdp~~~~sDeeI~~aL~~~~L~~~~ 1327 (1333)
+|.|+|+|++|+|.+||+|+++++.+++|+++++|||||++|+||+++| ..+.+|++++++++++++.+..
T Consensus 368 ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~ 438 (547)
T PRK10522 368 LLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKL 438 (547)
T ss_pred HHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhh
Confidence 9999999999999999999999999999999999999999999999999 2467899999999999987643
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-43 Score=433.79 Aligned_cols=193 Identities=22% Similarity=0.269 Sum_probs=152.0
Q ss_pred eeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC-------------
Q 000720 594 EAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------------- 659 (1333)
Q Consensus 594 ~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g------------- 659 (1333)
+|++++|+. .+++++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 2 ~nl~~~~~~--------~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~~~~ 72 (491)
T PRK10982 2 SNISKSFPG--------VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSI-LFQGKEIDFKSSKEALE 72 (491)
T ss_pred CceEEEeCC--------EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEE-EECCEECCCCCHHHHHh
Confidence 577888853 358999 99999999999999999999999999999999999986 5554
Q ss_pred -eEEEEcCCCCC-CCCCHHHHhccCCc-C-----CHHH-HHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHH
Q 000720 660 -KKAYVPQSSWI-QTGTIRENILFGKD-M-----RQSF-YEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1333)
Q Consensus 660 -~iayv~Q~~~i-~~~Tv~enI~~g~~-~-----~~~~-~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~ 730 (1333)
.++|++|++.+ ++.|++||+.++.. . +... .+++.+ -++.+ |......+++.+|||||||||+
T Consensus 73 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~------~l~~~--~l~~~~~~~~~~LSgGq~qrv~ 144 (491)
T PRK10982 73 NGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKA------IFDEL--DIDIDPRAKVATLSVSQMQMIE 144 (491)
T ss_pred CCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHH------HHHHc--CCCCCccCchhhCCHHHHHHHH
Confidence 37999999865 45799999987642 1 1111 111111 11111 1112335678899999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeEEEccCh
Q 000720 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKY 803 (1333)
Q Consensus 731 LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~~ 803 (1333)
||||++.+|+++||||||++||+.+.+.+.+.+.+...+++|+|++|||++++. .||+|++|++|++++.|+.
T Consensus 145 lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~ 218 (491)
T PRK10982 145 IAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPL 218 (491)
T ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecCh
Confidence 999999999999999999999999988887754443346899999999999886 4999999999999876543
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-43 Score=410.05 Aligned_cols=262 Identities=21% Similarity=0.302 Sum_probs=217.4
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CCCCCCCCCCCCCCccEEEeeeEEEcCC
Q 000720 524 KTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDN-QKKPITEPTSKASDVAIDIEAGEYAWDA 602 (1333)
Q Consensus 524 ~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e-~~~~~~~~~~~~~~~~I~i~~~~fsw~~ 602 (1333)
.++++++++|++++.|+.+..|+..+|..... .+|+++|+..+| +...... ..+.+..|+++|++++|+.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~nls~~y~~ 92 (329)
T PRK14257 22 LNELDAKAIYDEFQKLNKYQRAFAWLKLPKQK-------KAELKQFLNKKKTQVDLLKE--DFNHANVFEIRNFNFWYMN 92 (329)
T ss_pred cchhHHHHHHHHhhccccccchhhHHhccccc-------chhhhhcccccccccccccC--CCCcCceEEEEeeEEEecC
Confidence 35689999999999999999999988876543 569999998766 3211111 1234468999999999974
Q ss_pred cccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCc-----CCCCcEEEE---------------CCeE
Q 000720 603 REENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKV---------------HGKK 661 (1333)
Q Consensus 603 ~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~-----~~~G~~i~~---------------~g~i 661 (1333)
. ..+.|++ ||+|++||+++|+||||||||||+++|+|+++ |.+|++ .+ .+++
T Consensus 93 ~------~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I-~idG~~i~~~~~~~~~lr~~i 165 (329)
T PRK14257 93 R------TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEI-YFLGTNTRSKKISSLELRTRI 165 (329)
T ss_pred C------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEE-EECCEEccccccchHhhhccE
Confidence 3 3468999 99999999999999999999999999999986 468875 33 3468
Q ss_pred EEEcCCCCCCCCCHHHHhccCCcCC----HH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHH
Q 000720 662 AYVPQSSWIQTGTIRENILFGKDMR----QS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733 (1333)
Q Consensus 662 ayv~Q~~~i~~~Tv~enI~~g~~~~----~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LAR 733 (1333)
+|+||+||++++|++|||.|+..++ ++ .+++.++.|++..+++ +.+++++.+||||||||++|||
T Consensus 166 ~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~-------~~~~~~~~~LSgGqkqRl~LAR 238 (329)
T PRK14257 166 GMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVK-------DDLDKAGNALSGGQQQRLCIAR 238 (329)
T ss_pred EEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhh-------hhhhCCcccCCHHHHHHHHHHH
Confidence 9999999999999999999875322 22 2566677777654442 5678999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChHHHHhh
Q 000720 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIAD 809 (1333)
Q Consensus 734 Al~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~~l~~~ 809 (1333)
|++++|+|+||||||+|||+++.++ +.++++.+.+++|+|+|||+++++.. ||+|++|++|+|++.|+++++...
T Consensus 239 Al~~~p~IlLLDEPts~LD~~~~~~-i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~~ 314 (329)
T PRK14257 239 AIALEPEVLLMDEPTSALDPIATAK-IEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIH 314 (329)
T ss_pred HHHhCCCEEEEeCCcccCCHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999887 45677777778999999999999876 999999999999999999998763
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-41 Score=386.14 Aligned_cols=396 Identities=19% Similarity=0.287 Sum_probs=292.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCcchhHHHHhccHHHHHhHHHHHHH
Q 000720 927 EQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLA 1006 (1333)
Q Consensus 927 ~~~l~vy~~l~~~~~i~~~~~~~~~~~~~~~~s~~L~~~ll~~il~ap~~fFd~tp~GrIlnRfs~Di~~vd~~l~~~l~ 1006 (1333)
...+..|.+..+++.+|..++.+.++++..++.++...+.|++.+++.++||.+..+|.|-+++..-...|...+...+.
T Consensus 74 ~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~ 153 (591)
T KOG0057|consen 74 TALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVF 153 (591)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHH
Confidence 35677899999999999999999999999999999999999999999999999999998888877777777777766666
Q ss_pred HHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHhhchHHHHHHHHhcchHHHHhccc
Q 000720 1007 GLAFALIQLLSIIILMSQ-AAWQVFPLFLVILGISIWYQAYYITTAR-ELARMVGTRKAPILHHFSESIAGATTIRCFNQ 1084 (1333)
Q Consensus 1007 ~~~~~~~~~l~~ivv~~~-~~~~l~lv~ipl~~~~~~~~~~y~~~sr-el~rl~~~~~spl~~~~~Etl~G~~tIRaf~~ 1084 (1333)
.++..++.+......+.+ ..+.+.++++..+..|..+. .+...-| ..++....+.....+..-|++.+-.+||+||.
T Consensus 154 ~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~T-i~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNn 232 (591)
T KOG0057|consen 154 NIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFT-IVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNN 232 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeE-EeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHccc
Confidence 666555555444433322 23333333333333322111 1111111 22334455666777889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 000720 1085 ENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVT-LPRSAIDPSLAGLAATYGLNLNVLQAWVI 1163 (1333)
Q Consensus 1085 e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~ll~~~~~~~~~~~~~~-~~~~~~~~g~~gl~l~y~l~l~~~l~~~v 1163 (1333)
|++..++|...+.++.+......+....+.+.-..+.++....+...... ...+..+.+..-+..+...++...+..+-
T Consensus 233 E~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg 312 (591)
T KOG0057|consen 233 EEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLG 312 (591)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHH
Confidence 99999999999999988877665555544444444433322222222111 12234555666666666677777777777
Q ss_pred HHHHHHHHHhhHHHHHHHhhcCCCCCCcccCCCCCCCCCCCcccEEEEEEEEEECCCCCCccccceEEecCCcEEEEECC
Q 000720 1164 WNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGR 1243 (1333)
Q Consensus 1164 ~~~~~le~~~~SveRI~~~~~~p~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGr 1243 (1333)
..+.++-.++.-.+-.+...+. +.. +.+. +++.-+..|.|+|+||+|.|.|+.| ||+|+||+|++||||||||+
T Consensus 313 ~vyr~~~q~l~Dm~~~~~l~~~--~~~--i~~~-~~~i~~~~~~I~F~dV~f~y~~k~~-iL~gvsf~I~kGekVaIvG~ 386 (591)
T KOG0057|consen 313 SVYRELRQALTDMRTLFILLEV--DED--IQEA-ALPIELFGGSIEFDDVHFSYGPKRK-VLKGVSFTIPKGEKVAIVGS 386 (591)
T ss_pred HHHHHHHHHHHhHHHHHhhhhh--hhh--hhhc-cCCcccCCCcEEEEeeEEEeCCCCc-eecceeEEecCCCEEEEECC
Confidence 7777777766655544433221 111 1111 2222234678999999999987654 99999999999999999999
Q ss_pred CCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeEecccccccccchhhhcCCCC-CCCHHHHHHHHHhCC
Q 000720 1244 TGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLE-QHSDQEIWEVKISKL 1322 (1333)
Q Consensus 1244 TGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isiVpQdp~LF~GTIR~NLdp~~-~~sDeeI~~aL~~~~ 1322 (1333)
+||||||++++|+||+| .+|+|+|||+||++++++.||+-||+||||..||++||-+||.+++ ..||||+.+++++.+
T Consensus 387 nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~ 465 (591)
T KOG0057|consen 387 NGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAG 465 (591)
T ss_pred CCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcC
Confidence 99999999999999999 9999999999999999999999999999999999999999998775 589999999999999
Q ss_pred CCcccccC
Q 000720 1323 LTHKSYQC 1330 (1333)
Q Consensus 1323 L~~~~~~~ 1330 (1333)
+.|.....
T Consensus 466 ~hd~i~~l 473 (591)
T KOG0057|consen 466 LHDVISRL 473 (591)
T ss_pred cHHHHHhc
Confidence 99986554
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=360.95 Aligned_cols=203 Identities=30% Similarity=0.384 Sum_probs=170.7
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
-|+++|++.+|... .+|++ |++|++||.++|+||+||||||||+||.|+.+|++|++ .++|
T Consensus 2 mi~i~~l~K~fg~~--------~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I-~i~g~~~~~~~~~ 72 (240)
T COG1126 2 MIEIKNLSKSFGDK--------EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSI-TVDGEDVGDKKDI 72 (240)
T ss_pred eEEEEeeeEEeCCe--------EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceE-EECCEeccchhhH
Confidence 48899999999643 68999 99999999999999999999999999999999999996 7877
Q ss_pred -----eEEEEcCCCCCC-CCCHHHHhccCCc----CCH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHH
Q 000720 660 -----KKAYVPQSSWIQ-TGTIRENILFGKD----MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1333)
Q Consensus 660 -----~iayv~Q~~~i~-~~Tv~enI~~g~~----~~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQ 725 (1333)
++|+|+|+..+| ..||.||+..+.- ..+ ++-.+.++..+|.+. .+..+.+|||||
T Consensus 73 ~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~k-----------a~~yP~qLSGGQ 141 (240)
T COG1126 73 LKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADK-----------ADAYPAQLSGGQ 141 (240)
T ss_pred HHHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhh-----------hhhCccccCcHH
Confidence 368999998775 5799999998632 221 222233444444332 335678999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChH
Q 000720 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYE 804 (1333)
Q Consensus 726 kqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~ 804 (1333)
||||||||||+.+|+++|+|||||||||+...++.+-+.....+|.|.|+|||++.|+.. ||||+.|++|+|+++|+++
T Consensus 142 qQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~ 221 (240)
T COG1126 142 QQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPE 221 (240)
T ss_pred HHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHH
Confidence 999999999999999999999999999999998887555556678999999999999976 9999999999999999999
Q ss_pred HHHhhcch
Q 000720 805 DLIADQNS 812 (1333)
Q Consensus 805 ~l~~~~~~ 812 (1333)
++..++..
T Consensus 222 ~~f~~p~~ 229 (240)
T COG1126 222 EFFDNPKS 229 (240)
T ss_pred HHhcCCCC
Confidence 99875443
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-41 Score=421.70 Aligned_cols=206 Identities=23% Similarity=0.317 Sum_probs=151.9
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--eEEEEcCC
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVPQS 667 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--~iayv~Q~ 667 (1333)
|.++|++++|.. ..++++ ||+|++|++++|+|||||||||||++|+|+++|++|++ .+++ .++|++|+
T Consensus 2 i~i~nls~~~g~--------~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I-~~~~~~~i~~~~q~ 72 (638)
T PRK10636 2 IVFSSLQIRRGV--------RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSY-TFPGNWQLAWVNQE 72 (638)
T ss_pred EEEEEEEEEeCC--------ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EecCCCEEEEEecC
Confidence 688999999964 368999 99999999999999999999999999999999999997 6666 47999997
Q ss_pred CCCCCCCHHHHhccCCcCCH---------------HHHHHHHH---Hc---ccchHHHh-hc-CCCc-cccCCCCCCCCh
Q 000720 668 SWIQTGTIRENILFGKDMRQ---------------SFYEEVLE---GC---ALNQDIEM-WA-DGDL-SVVGERGINLSG 723 (1333)
Q Consensus 668 ~~i~~~Tv~enI~~g~~~~~---------------~~~~~v~~---~~---~l~~d~~~-~~-~g~~-t~ig~~g~~LSG 723 (1333)
+.....|+.+++.-+..... ..|..... .. .....+.. +. .|.. ...+.+..+|||
T Consensus 73 ~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSg 152 (638)
T PRK10636 73 TPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSG 152 (638)
T ss_pred CCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCH
Confidence 54444577666542210000 00100000 00 00001110 10 1111 123567889999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEE-Ecc
Q 000720 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE-QSG 801 (1333)
Q Consensus 724 GQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~-~~g 801 (1333)
||||||+|||||+.+|+++||||||++||+.+..++.+ .+... +.|||+||||++++.. ||+|++|++|++. +.|
T Consensus 153 GerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~-~L~~~--~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~~g 229 (638)
T PRK10636 153 GWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEK-WLKSY--QGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTG 229 (638)
T ss_pred HHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHH-HHHhC--CCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEecC
Confidence 99999999999999999999999999999999877655 33332 5799999999999875 9999999999996 678
Q ss_pred ChHHHHh
Q 000720 802 KYEDLIA 808 (1333)
Q Consensus 802 ~~~~l~~ 808 (1333)
+|+++..
T Consensus 230 ~~~~~~~ 236 (638)
T PRK10636 230 NYSSFEV 236 (638)
T ss_pred CHHHHHH
Confidence 8877654
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=416.78 Aligned_cols=205 Identities=24% Similarity=0.355 Sum_probs=152.5
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCe--EEEEcC
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--KAYVPQ 666 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~--iayv~Q 666 (1333)
.++++|++++|+. .+++++ ||++++|++++|+|||||||||||++|+|+++|++|++ .+++. ++|++|
T Consensus 3 ~l~i~~ls~~~~~--------~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I-~~~~~~~~~~l~q 73 (635)
T PRK11147 3 LISIHGAWLSFSD--------APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRI-IYEQDLIVARLQQ 73 (635)
T ss_pred EEEEeeEEEEeCC--------ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEE-EeCCCCEEEEecc
Confidence 3789999999964 368999 99999999999999999999999999999999999997 67664 689999
Q ss_pred CCCC-CCCCHHHHhccCCcCC---HHHH-------------------HHH---HHHc---ccchHHHh-hc-CCCccccC
Q 000720 667 SSWI-QTGTIRENILFGKDMR---QSFY-------------------EEV---LEGC---ALNQDIEM-WA-DGDLSVVG 715 (1333)
Q Consensus 667 ~~~i-~~~Tv~enI~~g~~~~---~~~~-------------------~~v---~~~~---~l~~d~~~-~~-~g~~t~ig 715 (1333)
.+.. ..+++.+++..+.... ...+ ..+ ++.. .....+.. +. .|. + ..
T Consensus 74 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl-~-~~ 151 (635)
T PRK11147 74 DPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGL-D-PD 151 (635)
T ss_pred CCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCC-C-CC
Confidence 7643 3468888764321100 0000 000 0000 00001111 00 011 1 24
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeC
Q 000720 716 ERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKD 794 (1333)
Q Consensus 716 ~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~ 794 (1333)
.+..+|||||||||+|||||+.+|+++||||||++||+.+.+++.+ .+... +.|||+||||.+++.. ||+|++|++
T Consensus 152 ~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~-~L~~~--~~tvlivsHd~~~l~~~~d~i~~L~~ 228 (635)
T PRK11147 152 AALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEG-FLKTF--QGSIIFISHDRSFIRNMATRIVDLDR 228 (635)
T ss_pred CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHH-HHHhC--CCEEEEEeCCHHHHHHhcCeEEEEEC
Confidence 6778999999999999999999999999999999999999887765 34333 3699999999999875 999999999
Q ss_pred CeEE-EccChHHHHh
Q 000720 795 GKIE-QSGKYEDLIA 808 (1333)
Q Consensus 795 G~i~-~~g~~~~l~~ 808 (1333)
|+++ +.|+|+++..
T Consensus 229 G~i~~~~g~~~~~~~ 243 (635)
T PRK11147 229 GKLVSYPGNYDQYLL 243 (635)
T ss_pred CEEEEecCCHHHHHH
Confidence 9997 5688887765
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=428.60 Aligned_cols=198 Identities=21% Similarity=0.315 Sum_probs=151.1
Q ss_pred CcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCC---CCcEEEECC----------eEEEEcCCCC-CCCCC
Q 000720 610 PTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI---SGAAIKVHG----------KKAYVPQSSW-IQTGT 674 (1333)
Q Consensus 610 ~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~---~G~~i~~~g----------~iayv~Q~~~-i~~~T 674 (1333)
...+|+| |+.+++||+++|+|||||||||||++|+|.++|. +|++ .++| .++||+|++. +.+.|
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I-~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lT 255 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEI-TYNGYRLNEFVPRKTSAYISQNDVHVGVMT 255 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEE-EECCEechhhcccceeEEecccccCCCcCc
Confidence 3457999 9999999999999999999999999999999987 8886 5554 4799999865 56789
Q ss_pred HHHHhccCCcCC--------------HHH---------HHHHHHHccc---------chHHHh--hcCCCccccCC-CCC
Q 000720 675 IRENILFGKDMR--------------QSF---------YEEVLEGCAL---------NQDIEM--WADGDLSVVGE-RGI 719 (1333)
Q Consensus 675 v~enI~~g~~~~--------------~~~---------~~~v~~~~~l---------~~d~~~--~~~g~~t~ig~-~g~ 719 (1333)
|+||+.|+.... +++ .+...+++.. +.-++. +.+..+|.+|. ...
T Consensus 256 V~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~r 335 (1470)
T PLN03140 256 VKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIR 335 (1470)
T ss_pred HHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCcccc
Confidence 999999853211 000 0001111110 001112 22233566654 567
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchh-h-hhcCCEEEEEeCCe
Q 000720 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLE-F-LDAADLVLVMKDGK 796 (1333)
Q Consensus 720 ~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~-~-l~~aD~i~vl~~G~ 796 (1333)
.|||||||||+|||+++.+|++++|||||+|||+.++.++.+.+.+... .|+|+|+++||+. . .+.+|+|++|++|+
T Consensus 336 glSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ 415 (1470)
T PLN03140 336 GISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQ 415 (1470)
T ss_pred CCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCce
Confidence 9999999999999999999999999999999999999988865444333 4799999999973 4 45699999999999
Q ss_pred EEEccChHHHHh
Q 000720 797 IEQSGKYEDLIA 808 (1333)
Q Consensus 797 i~~~g~~~~l~~ 808 (1333)
+++.|+.+++.+
T Consensus 416 ivy~G~~~~~~~ 427 (1470)
T PLN03140 416 IVYQGPRDHILE 427 (1470)
T ss_pred EEEeCCHHHHHH
Confidence 999999988863
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=393.62 Aligned_cols=206 Identities=25% Similarity=0.360 Sum_probs=159.4
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--eEEEEcC
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVPQ 666 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--~iayv~Q 666 (1333)
.|.++|++++|.. ++.+.+ |+++.+|+++||||+|||||||||++|.|+..|++|++ ...+ +++|++|
T Consensus 3 ~i~~~~ls~~~g~--------~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i-~~~~~~~v~~l~Q 73 (530)
T COG0488 3 MITLENLSLAYGD--------RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEV-TRPKGLRVGYLSQ 73 (530)
T ss_pred eEEEeeeEEeeCC--------ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeE-eecCCceEEEeCC
Confidence 4788999999954 478999 99999999999999999999999999999999999997 5554 7999999
Q ss_pred CCCCCC-CCHHHHhccCCcCCH---HHHHHHHHHc---------------------ccchHHHhhcC--CCccccCCCCC
Q 000720 667 SSWIQT-GTIRENILFGKDMRQ---SFYEEVLEGC---------------------ALNQDIEMWAD--GDLSVVGERGI 719 (1333)
Q Consensus 667 ~~~i~~-~Tv~enI~~g~~~~~---~~~~~v~~~~---------------------~l~~d~~~~~~--g~~t~ig~~g~ 719 (1333)
++.... .||+|.+..+...-. ..++...... ..+.+++..-. |.... ..+..
T Consensus 74 ~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~ 152 (530)
T COG0488 74 EPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVS 152 (530)
T ss_pred CCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchh
Confidence 988764 599999987743211 1111111100 00111111111 22222 46778
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeE-
Q 000720 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKI- 797 (1333)
Q Consensus 720 ~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i- 797 (1333)
+||||||.||+|||||..+||++||||||++||..+..++-+ .+. ..+| |+|+||||.+|+.. |++|+.+++|++
T Consensus 153 ~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~-~L~-~~~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~ 229 (530)
T COG0488 153 SLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLED-YLK-RYPG-TVIVVSHDRYFLDNVATHILELDRGKLT 229 (530)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHH-HHH-hCCC-cEEEEeCCHHHHHHHhhheEEecCCcee
Confidence 999999999999999999999999999999999998777644 332 2245 99999999999987 999999999987
Q ss_pred EEccChHHHHh
Q 000720 798 EQSGKYEDLIA 808 (1333)
Q Consensus 798 ~~~g~~~~l~~ 808 (1333)
.+.|+|+...+
T Consensus 230 ~y~Gny~~~~~ 240 (530)
T COG0488 230 PYKGNYSSYLE 240 (530)
T ss_pred EecCCHHHHHH
Confidence 47888988876
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=403.36 Aligned_cols=205 Identities=22% Similarity=0.273 Sum_probs=145.6
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCeEEEEcCC
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQS 667 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~iayv~Q~ 667 (1333)
..|.++|++++|+.. +.|++ ||+|++|++++|+|||||||||||++|+|+.. .| + .-+|+++|++|+
T Consensus 176 ~~I~i~nls~~y~~~--------~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~--~g-~-p~~g~I~~~~Q~ 243 (718)
T PLN03073 176 KDIHMENFSISVGGR--------DLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAI--DG-I-PKNCQILHVEQE 243 (718)
T ss_pred eeEEEceEEEEeCCC--------EEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CC-C-CCCCEEEEEecc
Confidence 469999999999643 58999 99999999999999999999999999999741 23 1 335678899997
Q ss_pred CCCCCCCHHHHhccCC-------------------------------------cCCH--HHHHHHHHHcccch------H
Q 000720 668 SWIQTGTIRENILFGK-------------------------------------DMRQ--SFYEEVLEGCALNQ------D 702 (1333)
Q Consensus 668 ~~i~~~Tv~enI~~g~-------------------------------------~~~~--~~~~~v~~~~~l~~------d 702 (1333)
+.-...|+.|.+.-.. +.+. +++.++.+...+.+ .
T Consensus 244 ~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r 323 (718)
T PLN03073 244 VVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEAR 323 (718)
T ss_pred CCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHH
Confidence 5433445544322110 0000 11222222111100 0
Q ss_pred HHh-hc-CCCc-cccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCc
Q 000720 703 IEM-WA-DGDL-SVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQ 779 (1333)
Q Consensus 703 ~~~-~~-~g~~-t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~ 779 (1333)
+.. +. .|-. .....+..+||||||||++|||||+.+|+++||||||++||+....++.+. ++.. ++|+|+||||
T Consensus 324 ~~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~-L~~~--~~tviivsHd 400 (718)
T PLN03073 324 AASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETY-LLKW--PKTFIVVSHA 400 (718)
T ss_pred HHHHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHH-HHHc--CCEEEEEECC
Confidence 000 00 0110 123456789999999999999999999999999999999999998877653 3333 6899999999
Q ss_pred hhhhhc-CCEEEEEeCCeEE-EccChHHHHh
Q 000720 780 LEFLDA-ADLVLVMKDGKIE-QSGKYEDLIA 808 (1333)
Q Consensus 780 ~~~l~~-aD~i~vl~~G~i~-~~g~~~~l~~ 808 (1333)
.+++.. ||+|++|++|++. +.|+++++..
T Consensus 401 ~~~l~~~~d~i~~l~~g~i~~~~g~~~~~~~ 431 (718)
T PLN03073 401 REFLNTVVTDILHLHGQKLVTYKGDYDTFER 431 (718)
T ss_pred HHHHHHhCCEEEEEECCEEEEeCCCHHHHHH
Confidence 999876 9999999999996 7888877654
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=361.87 Aligned_cols=381 Identities=17% Similarity=0.304 Sum_probs=310.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCcchhHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 000720 947 RAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMS-QA 1025 (1333)
Q Consensus 947 ~~~~~~~~~~~~s~~L~~~ll~~il~ap~~fFd~tp~GrIlnRfs~Di~~vd~~l~~~l~~~~~~~~~~l~~ivv~~-~~ 1025 (1333)
|..++...+..+.+.+--+-|.|+....+.|.-+..+|-+..-...-..-|+..+-..+...+...+.+...++++. ..
T Consensus 2 r~~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~ 81 (497)
T COG5265 2 RDRLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVY 81 (497)
T ss_pred chHhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Confidence 34567788888999999999999999999999887777554333333344444455555555555555554444443 45
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Q 000720 1026 AWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFH 1105 (1333)
Q Consensus 1026 ~~~l~lv~ipl~~~~~~~~~~y~~~srel~rl~~~~~spl~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~ 1105 (1333)
+|++..+.+..+++|.++......---..+|....+.+...+...+++-+-.|++.|+.|+.+..+|.+.++.+.++...
T Consensus 82 ~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k 161 (497)
T COG5265 82 GWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIK 161 (497)
T ss_pred ccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHH
Confidence 78888887777777666544444334455677777888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhc
Q 000720 1106 NCGTMEWLCLRINLLFNFAFFLVLIIL-VTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTN 1184 (1333)
Q Consensus 1106 ~~~~~~wl~~rl~ll~~~~~~~~~~~~-~~~~~~~~~~g~~gl~l~y~l~l~~~l~~~v~~~~~le~~~~SveRI~~~~~ 1184 (1333)
...+-.||++.-..+.+.......... .....+..+.|...+.-.+..+++.+++.+-..+.++.+.....|+..+..+
T Consensus 162 ~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~ 241 (497)
T COG5265 162 VHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLD 241 (497)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhc
Confidence 988889988877766654433332221 1233566788888889999999999999999999999999999999999988
Q ss_pred CCCCCCcccCCCCCCCCCCC-cccEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCC
Q 000720 1185 IPSEAPLVIKNSRPSPEWPS-SGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG 1263 (1333)
Q Consensus 1185 ~p~E~~~~~~~~~~~~~wp~-~G~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~ 1263 (1333)
.+.|-. +....++.||. .|.|.|+||+|.|.|..| +|+|+||++++|+|+||||++|+||||+..+|+||||+++
T Consensus 242 ~~~~v~---d~pda~~L~~~~~g~v~F~~V~F~y~~~r~-iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~s 317 (497)
T COG5265 242 VEAEVS---DAPDAPPLWPVRLGAVAFINVSFAYDPRRP-ILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNS 317 (497)
T ss_pred cchhhc---cCCCCccccccccceEEEEEEEeeccccch-hhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcC
Confidence 776642 34456677864 589999999999998876 9999999999999999999999999999999999999999
Q ss_pred CeEEEcCEeCCCCChHHHhhcCeEecccccccccchhhhcCCCC-CCCHHHHHHHHHhCCCCcccccCC
Q 000720 1264 GRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLE-QHSDQEIWEVKISKLLTHKSYQCE 1331 (1333)
Q Consensus 1264 G~I~IDGvdI~~i~l~~LRs~isiVpQdp~LF~GTIR~NLdp~~-~~sDeeI~~aL~~~~L~~~~~~~~ 1331 (1333)
|+|.|||+||+++..++||+.||+||||.+||+.||..|+...+ ..|+||+++|++.+|+.+...+.|
T Consensus 318 G~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP 386 (497)
T COG5265 318 GSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLP 386 (497)
T ss_pred ceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCc
Confidence 99999999999999999999999999999999999999998765 589999999999999998876655
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-39 Score=355.45 Aligned_cols=206 Identities=28% Similarity=0.400 Sum_probs=157.2
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcC-----CCCcEEEECC---
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG--- 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~-----~~G~~i~~~g--- 659 (1333)
.-+.++|.+.++...+ ......++ +|++++||.+|+||++|||||-..++|+|+++. .+|++ ..+|
T Consensus 5 ~lL~v~nLsV~f~~~~----~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i-~f~G~dl 79 (534)
T COG4172 5 PLLSIRNLSVAFHQEG----GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSI-LFDGEDL 79 (534)
T ss_pred cceeeeccEEEEecCC----cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCcccee-EEcChhh
Confidence 4578888887776441 34567889 999999999999999999999999999999975 24554 4443
Q ss_pred --------------eEEEEcCCCC--CCC-CCHHHHhc----cCCcCC----HHHHHHHHHHcccchHHHhhcCCCcccc
Q 000720 660 --------------KKAYVPQSSW--IQT-GTIRENIL----FGKDMR----QSFYEEVLEGCALNQDIEMWADGDLSVV 714 (1333)
Q Consensus 660 --------------~iayv~Q~~~--i~~-~Tv~enI~----~g~~~~----~~~~~~v~~~~~l~~d~~~~~~g~~t~i 714 (1333)
+|++++|+|- +.. .||..-|. ..+... +++.-+.++..++.+- ...+
T Consensus 80 l~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p--------~~rl 151 (534)
T COG4172 80 LAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEP--------EKRL 151 (534)
T ss_pred hcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCch--------hhhh
Confidence 6899999995 222 36655443 322222 1223333344443221 1234
Q ss_pred CCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCCeEEEecCchhhhhc-CCEEEE
Q 000720 715 GERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLV 791 (1333)
Q Consensus 715 g~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~--~~~TvIlvtH~~~~l~~-aD~i~v 791 (1333)
+..+.+|||||||||.||.||+.+||++|-||||.|||..++.+|.+. ++.+. -|..++++|||+..+.. ||+|+|
T Consensus 152 ~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~L-l~~Lq~~~gMa~lfITHDL~iVr~~ADrV~V 230 (534)
T COG4172 152 DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDL-LKELQAELGMAILFITHDLGIVRKFADRVYV 230 (534)
T ss_pred hhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHH-HHHHHHHhCcEEEEEeccHHHHHHhhhhEEE
Confidence 567899999999999999999999999999999999999999999874 44443 37899999999999976 999999
Q ss_pred EeCCeEEEccChHHHHh
Q 000720 792 MKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 792 l~~G~i~~~g~~~~l~~ 808 (1333)
|.+|++++.|+.+++..
T Consensus 231 M~~G~ivE~~~t~~lF~ 247 (534)
T COG4172 231 MQHGEIVETGTTETLFA 247 (534)
T ss_pred EeccEEeecCcHHHHhh
Confidence 99999999998777765
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=349.04 Aligned_cols=210 Identities=27% Similarity=0.385 Sum_probs=174.3
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
|+++|+++.|.. ...+++ ||+|++||+++++||+||||||+|++|.++++|++|++ .++|
T Consensus 2 I~~~nvsk~y~~--------~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I-~i~g~~i~~~d~~~ 72 (309)
T COG1125 2 IEFENVSKRYGN--------KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI-LIDGEDISDLDPVE 72 (309)
T ss_pred ceeeeeehhcCC--------ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceE-EECCeecccCCHHH
Confidence 789999999963 367888 99999999999999999999999999999999999996 7776
Q ss_pred ---eEEEEcCCCCC-CCCCHHHHhccCCc---CCHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHH
Q 000720 660 ---KKAYVPQSSWI-QTGTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728 (1333)
Q Consensus 660 ---~iayv~Q~~~i-~~~Tv~enI~~g~~---~~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqR 728 (1333)
++|||-|+.-+ ++.||.|||..-.. ++++ +.++.++..+|+.. ...++.+.+|||||+||
T Consensus 73 LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~---------~~~~RyP~eLSGGQQQR 143 (309)
T COG1125 73 LRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPS---------EYADRYPHELSGGQQQR 143 (309)
T ss_pred HHHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHH---------HHhhcCchhcCcchhhH
Confidence 47999998765 57899999987543 3333 33344444444321 12346789999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhh-hcCCEEEEEeCCeEEEccChHHH
Q 000720 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDL 806 (1333)
Q Consensus 729 v~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l-~~aD~i~vl~~G~i~~~g~~~~l 806 (1333)
|.+||||+.+|+|+|+||||+||||.++.++-+++.+... -++|+|+||||++++ +-+|||.+|++|+|++.++|+++
T Consensus 144 VGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~i 223 (309)
T COG1125 144 VGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEI 223 (309)
T ss_pred HHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHH
Confidence 9999999999999999999999999998888766554333 389999999999885 56999999999999999999999
Q ss_pred HhhcchHHHHHH
Q 000720 807 IADQNSELVRQM 818 (1333)
Q Consensus 807 ~~~~~~~~~~~~ 818 (1333)
+.++..+|.+.+
T Consensus 224 l~~Pan~FV~~f 235 (309)
T COG1125 224 LANPANDFVEDF 235 (309)
T ss_pred HhCccHHHHHHH
Confidence 987777776644
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-40 Score=357.15 Aligned_cols=214 Identities=26% Similarity=0.340 Sum_probs=174.4
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
|+++++++.|..+. ......++| ||+|++||+.+|+|++|||||||+++|.++..|++|++ .++|
T Consensus 2 I~l~~vsK~~~~~~---~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v-~v~G~di~~l~~~~ 77 (339)
T COG1135 2 IELENVSKTFGQTG---TGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSV-FVDGQDLTALSEAE 77 (339)
T ss_pred eEEEeeeeeeccCC---CCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceE-EEcCEecccCChHH
Confidence 78999999997630 123467899 99999999999999999999999999999999999997 7776
Q ss_pred ------eEEEEcCCCCCCC-CCHHHHhccCCcCC----HHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHH
Q 000720 660 ------KKAYVPQSSWIQT-GTIRENILFGKDMR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728 (1333)
Q Consensus 660 ------~iayv~Q~~~i~~-~Tv~enI~~g~~~~----~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqR 728 (1333)
+||+++|++.+.+ .||.|||.|..+.. ++..+++.+.+.+. |.....+..+.+||||||||
T Consensus 78 Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelV--------gL~dk~~~yP~qLSGGQKQR 149 (339)
T COG1135 78 LRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELV--------GLSDKADRYPAQLSGGQKQR 149 (339)
T ss_pred HHHHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHc--------CChhhhccCchhcCcchhhH
Confidence 4799999998775 79999999975432 23344444333221 11123346789999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChHHH
Q 000720 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDL 806 (1333)
Q Consensus 729 v~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~-~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~~l 806 (1333)
|+|||||+.+|+|+|.|||||||||++.+.|.+.+.+-. .-|-||++|||.|+.++. ||||.||++|++++.|+..++
T Consensus 150 VaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~v 229 (339)
T COG1135 150 VAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEV 229 (339)
T ss_pred HHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHh
Confidence 999999999999999999999999999999987543322 237899999999999976 999999999999999999999
Q ss_pred HhhcchHHHH
Q 000720 807 IADQNSELVR 816 (1333)
Q Consensus 807 ~~~~~~~~~~ 816 (1333)
..++..+..+
T Consensus 230 F~~Pk~~~t~ 239 (339)
T COG1135 230 FANPKHAITQ 239 (339)
T ss_pred hcCcchHHHH
Confidence 8765544433
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=349.74 Aligned_cols=188 Identities=32% Similarity=0.446 Sum_probs=157.8
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--------e
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------K 660 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------~ 660 (1333)
.+.+++++.+|.. ..+|+| ||+|++||+++|+||+||||||||++|+|+.+|++|++ .++| .
T Consensus 3 ~l~i~~v~~~f~~--------~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V-~~~g~~v~~p~~~ 73 (248)
T COG1116 3 LLEIEGVSKSFGG--------VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV-LLDGRPVTGPGPD 73 (248)
T ss_pred eEEEEeeEEEeCc--------eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCcccCCCCCC
Confidence 4788999998864 478999 99999999999999999999999999999999999986 7766 4
Q ss_pred EEEEcCCCCCC-CCCHHHHhccCCcCC-------HHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHH
Q 000720 661 KAYVPQSSWIQ-TGTIRENILFGKDMR-------QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732 (1333)
Q Consensus 661 iayv~Q~~~i~-~~Tv~enI~~g~~~~-------~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LA 732 (1333)
+|||+|++-++ -.||+||+.++.+.. .++-++.++..+|.. .-+..+.+|||||||||+||
T Consensus 74 ~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~-----------~~~~~P~qLSGGMrQRVaiA 142 (248)
T COG1116 74 IGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAG-----------FEDKYPHQLSGGMRQRVAIA 142 (248)
T ss_pred EEEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcc-----------hhhcCccccChHHHHHHHHH
Confidence 79999998754 579999999987642 123344455555432 22367889999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhh-cCCEEEEEeC--CeE
Q 000720 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLD-AADLVLVMKD--GKI 797 (1333)
Q Consensus 733 RAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~-~aD~i~vl~~--G~i 797 (1333)
|||+.+|+++||||||+|||+.|+.++-+.+.+-+.+ ++||++||||+++.- -+|||++|.+ |+|
T Consensus 143 RAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i 211 (248)
T COG1116 143 RALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRI 211 (248)
T ss_pred HHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcce
Confidence 9999999999999999999999999888777665544 689999999998865 4999999998 445
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-39 Score=354.38 Aligned_cols=199 Identities=30% Similarity=0.418 Sum_probs=168.2
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|.+|+|+. +++++| ||++++||+++|+|||||||||||++|+|.++|.+|++ .++|
T Consensus 2 ~L~~~~ls~~y~~--------~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V-~l~g~~i~~~~~k 72 (258)
T COG1120 2 MLEVENLSFGYGG--------KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV-LLDGKDIASLSPK 72 (258)
T ss_pred eeEEEEEEEEECC--------eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEE-EECCCchhhcCHH
Confidence 4789999999974 489999 99999999999999999999999999999999999996 8877
Q ss_pred ----eEEEEcCCCC-CCCCCHHHHhccCCcCC--------HHH---HHHHHHHcccchHHHhhcCCCccccCCCCCCCCh
Q 000720 660 ----KKAYVPQSSW-IQTGTIRENILFGKDMR--------QSF---YEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1333)
Q Consensus 660 ----~iayv~Q~~~-i~~~Tv~enI~~g~~~~--------~~~---~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSG 723 (1333)
++||+||++. .+..||+|-+.+|+... ++. .+++++.+++. ...++...+|||
T Consensus 73 elAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~-----------~la~r~~~~LSG 141 (258)
T COG1120 73 ELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLE-----------HLADRPVDELSG 141 (258)
T ss_pred HHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcH-----------HHhcCcccccCh
Confidence 5899999975 45779999999996421 111 22234444332 122356789999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEecCchhhh-hcCCEEEEEeCCeEEEcc
Q 000720 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSG 801 (1333)
Q Consensus 724 GQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~-~~~~TvIlvtH~~~~l-~~aD~i~vl~~G~i~~~g 801 (1333)
||||||.|||||+++|+++|||||||+||...+.++++.+.+.. .+|+|+|+|+||++.. .+||++++|++|+++..|
T Consensus 142 GerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G 221 (258)
T COG1120 142 GERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQG 221 (258)
T ss_pred hHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeec
Confidence 99999999999999999999999999999999999988665544 3589999999999985 679999999999999999
Q ss_pred ChHHHHh
Q 000720 802 KYEDLIA 808 (1333)
Q Consensus 802 ~~~~l~~ 808 (1333)
++++++.
T Consensus 222 ~p~evlT 228 (258)
T COG1120 222 TPEEVLT 228 (258)
T ss_pred CcchhcC
Confidence 9999986
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=351.04 Aligned_cols=199 Identities=32% Similarity=0.476 Sum_probs=165.6
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--------
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g-------- 659 (1333)
..|+++|++|+|+.+ ++|+| ||++++|++++|+||||||||||+|+|+|+++|.+|++ .+.|
T Consensus 3 ~~i~v~nl~v~y~~~--------~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i-~~~g~~~~~~~~ 73 (254)
T COG1121 3 PMIEVENLTVSYGNR--------PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEI-KIFGKPVRKRRK 73 (254)
T ss_pred cEEEEeeeEEEECCE--------eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceE-EEcccccccccc
Confidence 359999999999742 58999 99999999999999999999999999999999999997 6543
Q ss_pred --eEEEEcCCC---CCCCCCHHHHhccCCcCCH-----------HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCCh
Q 000720 660 --KKAYVPQSS---WIQTGTIRENILFGKDMRQ-----------SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1333)
Q Consensus 660 --~iayv~Q~~---~i~~~Tv~enI~~g~~~~~-----------~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSG 723 (1333)
+||||||.. |-|+.||+|-+.+|..... +..+++++..++. ...+++..+|||
T Consensus 74 ~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~-----------~~~~r~i~~LSG 142 (254)
T COG1121 74 RLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGME-----------DLRDRQIGELSG 142 (254)
T ss_pred CCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCch-----------hhhCCcccccCc
Confidence 599999964 6788999999999854322 3344444444433 123467789999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeEEEccC
Q 000720 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGK 802 (1333)
Q Consensus 724 GQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~ 802 (1333)
||+|||.|||||+++||+++|||||+|+|+.++..+++.+.+...+|+||++||||++.+. ++|+|+.|+ +++...|+
T Consensus 143 GQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~ 221 (254)
T COG1121 143 GQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGP 221 (254)
T ss_pred HHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccC
Confidence 9999999999999999999999999999999988887644444445999999999999875 599999996 57788999
Q ss_pred hHHHHh
Q 000720 803 YEDLIA 808 (1333)
Q Consensus 803 ~~~l~~ 808 (1333)
+++..+
T Consensus 222 ~~~~~~ 227 (254)
T COG1121 222 PEEVLT 227 (254)
T ss_pred hhhccC
Confidence 999876
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=386.22 Aligned_cols=422 Identities=12% Similarity=0.009 Sum_probs=327.1
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhcccccccch---h----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 893 VPVILLCQVLFQALQMGSNYWIAWATDEKRKVSR---E----QLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLN 965 (1333)
Q Consensus 893 ~~~~ll~~~l~~~~~~~~~~wl~~~~~~~~~~~~---~----~~l~vy~~l~~~~~i~~~~~~~~~~~~~~~~s~~L~~~ 965 (1333)
+++.+++.++...+.+..+++.+...+.-...+. . .++.+++++.++..+..++...+......+..+++|++
T Consensus 98 l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~ 177 (659)
T TIGR00954 98 LILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKYLLKELKLRFRVRLTRYLYSK 177 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555566777788888888766643211111 1 12223334444555556666667777788888889999
Q ss_pred HHHHHhcCccccccccCcchhHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHH
Q 000720 966 MITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQ-AAWQVFPLFLVILGISIWYQ 1044 (1333)
Q Consensus 966 ll~~il~ap~~fFd~tp~GrIlnRfs~Di~~vd~~l~~~l~~~~~~~~~~l~~ivv~~~-~~~~l~lv~ipl~~~~~~~~ 1044 (1333)
.+++....++.|||+ ++|++++|+++|++.+.+.+...+..++..++.+++.++++.. .+|.++++++..+++..++.
T Consensus 178 ~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l~~~i~ 256 (659)
T TIGR00954 178 YLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFATGVVL 256 (659)
T ss_pred HhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 999888899999997 8899999999999999999999999999999999988887776 89999888888888888889
Q ss_pred HHHHHHHHHHHHHHhHhhchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 1045 AYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFA 1124 (1333)
Q Consensus 1045 ~~y~~~srel~rl~~~~~spl~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~ll~~~~ 1124 (1333)
+++.+..+++.+..+...+...+.++|.++|+.+||+|+.|+.+.+++.+..++..+..........++....+++...+
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~ 336 (659)
T TIGR00954 257 TKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIVAKYT 336 (659)
T ss_pred HHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988888888888888877765432
Q ss_pred HH--HHHHH-H-HhccC----CCCChHH-HHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCC--
Q 000720 1125 FF--LVLII-L-VTLPR----SAIDPSL-AGLAATY---GLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAP-- 1190 (1333)
Q Consensus 1125 ~~--~~~~~-~-~~~~~----~~~~~g~-~gl~l~y---~l~l~~~l~~~v~~~~~le~~~~SveRI~~~~~~p~E~~-- 1190 (1333)
.. ..++. . +.... +.++.|. ++..++| ..++...+..+.....++....++.+|+.++++.++|..
T Consensus 337 ~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~~ 416 (659)
T TIGR00954 337 WSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKSG 416 (659)
T ss_pred HHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 11 11111 1 12111 4455553 3434444 445577778888899999999999999999987543211
Q ss_pred -----cccC--CC-----CCC------CCCCCcccEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHH
Q 000720 1191 -----LVIK--NS-----RPS------PEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLI 1252 (1333)
Q Consensus 1191 -----~~~~--~~-----~~~------~~wp~~G~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi 1252 (1333)
...+ +. +++ ......|.|+|+||+++|+.+. ++|+|+||+|++||++||||++|||||||+
T Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~~-~il~~isl~i~~Ge~~~IvG~nGsGKSTLl 495 (659)
T TIGR00954 417 NFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNGD-VLIESLSFEVPSGNHLLICGPNGCGKSSLF 495 (659)
T ss_pred cccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCCC-eeeecceEEECCCCEEEEECCCCCCHHHHH
Confidence 0000 00 000 0001346799999999996443 599999999999999999999999999999
Q ss_pred HHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeEecccccccccchhhhcCCC--------CCCCHHHHHHHHHhCCCC
Q 000720 1253 QALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPL--------EQHSDQEIWEVKISKLLT 1324 (1333)
Q Consensus 1253 ~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isiVpQdp~LF~GTIR~NLdp~--------~~~sDeeI~~aL~~~~L~ 1324 (1333)
++|.|+++|++|+|.+|+ |+++++|||||.+|++|+||||... .+.+|++++++|++++|.
T Consensus 496 ~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~ 564 (659)
T TIGR00954 496 RILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLT 564 (659)
T ss_pred HHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCH
Confidence 999999999999999874 6789999999999999999999742 346789999999999997
Q ss_pred ccc
Q 000720 1325 HKS 1327 (1333)
Q Consensus 1325 ~~~ 1327 (1333)
+..
T Consensus 565 ~~~ 567 (659)
T TIGR00954 565 HIL 567 (659)
T ss_pred HHH
Confidence 643
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=360.48 Aligned_cols=221 Identities=25% Similarity=0.354 Sum_probs=193.4
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.|+++|++++|+.. ..+.|++ ||+|++||+++|+|+||||||||+++|+|+++ .+|++ .++|
T Consensus 2 ~i~~~nls~~~~~~------~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I-~i~g~~i~~~~~~ 73 (275)
T cd03289 2 QMTVKDLTAKYTEG------GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDI-QIDGVSWNSVPLQ 73 (275)
T ss_pred eEEEEEEEEEeCCC------CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEE-EECCEEhhhCCHH
Confidence 48999999999753 2468999 99999999999999999999999999999998 78986 6665
Q ss_pred ----eEEEEcCCCCCCCCCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHH
Q 000720 660 ----KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (1333)
Q Consensus 660 ----~iayv~Q~~~i~~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl 735 (1333)
+++|+||+|+++++|++||+........++..+.++.+++...+..+|.+.++.+++.|.+||||||||++||||+
T Consensus 74 ~lr~~i~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRal 153 (275)
T cd03289 74 KWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSV 153 (275)
T ss_pred HHhhhEEEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999964334556677788889999888889999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccChHHHHhhcchHHH
Q 000720 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELV 815 (1333)
Q Consensus 736 ~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~~~l~~~~~~~~~ 815 (1333)
+++|+|+||||||++||+.+.+.+.+ .++...+++|+|+|||+++.+..||+|++|++|++++.|+++++.+ ....+.
T Consensus 154 l~~p~illlDEpts~LD~~~~~~l~~-~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~-~~~~~~ 231 (275)
T cd03289 154 LSKAKILLLDEPSAHLDPITYQVIRK-TLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLN-EKSHFK 231 (275)
T ss_pred hcCCCEEEEECccccCCHHHHHHHHH-HHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhh-CcHHHH
Confidence 99999999999999999999776655 4555556899999999999988899999999999999999999988 445555
Q ss_pred HHHHh
Q 000720 816 RQMKA 820 (1333)
Q Consensus 816 ~~~~~ 820 (1333)
.++..
T Consensus 232 ~~~~~ 236 (275)
T cd03289 232 QAISP 236 (275)
T ss_pred HHHhh
Confidence 55543
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=336.27 Aligned_cols=204 Identities=29% Similarity=0.430 Sum_probs=171.1
Q ss_pred CccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC-------
Q 000720 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (1333)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g------- 659 (1333)
+..|+++++++++.++ .++++ ||+|++||+++|+||+||||||||++|.|+++|++|++ .++|
T Consensus 6 ~~~I~vr~v~~~fG~~--------~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI-~i~G~~i~~ls 76 (263)
T COG1127 6 EPLIEVRGVTKSFGDR--------VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI-LIDGEDIPQLS 76 (263)
T ss_pred cceEEEeeeeeecCCE--------EEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeE-EEcCcchhccC
Confidence 4579999999999654 78999 99999999999999999999999999999999999997 6665
Q ss_pred ---------eEEEEcCCCCCCC-CCHHHHhccCCc----CCHHHHHH----HHHHcccchH-HHhhcCCCccccCCCCCC
Q 000720 660 ---------KKAYVPQSSWIQT-GTIRENILFGKD----MRQSFYEE----VLEGCALNQD-IEMWADGDLSVVGERGIN 720 (1333)
Q Consensus 660 ---------~iayv~Q~~~i~~-~Tv~enI~~g~~----~~~~~~~~----v~~~~~l~~d-~~~~~~g~~t~ig~~g~~ 720 (1333)
++|+++|+.-+|+ .||+||+.|... ..+...++ -++.++|..+ .+ ..+.+
T Consensus 77 ~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~-----------~~PsE 145 (263)
T COG1127 77 EEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAAD-----------LYPSE 145 (263)
T ss_pred HHHHHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhh-----------hCchh
Confidence 4799999988875 699999999632 23333333 2455666554 33 34679
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCeEEEecCchhhhh-cCCEEEEEeCCeE
Q 000720 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLD-AADLVLVMKDGKI 797 (1333)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~--~~TvIlvtH~~~~l~-~aD~i~vl~~G~i 797 (1333)
||||+++|++||||++.||+++++||||+||||.++. .++++++.+.+ +.|+|+||||++.+. .||+|+++.||+|
T Consensus 146 LSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~-~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv 224 (263)
T COG1127 146 LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAG-VIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKV 224 (263)
T ss_pred hcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHH-HHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEE
Confidence 9999999999999999999999999999999998765 55677766654 789999999999875 4999999999999
Q ss_pred EEccChHHHHhhcch
Q 000720 798 EQSGKYEDLIADQNS 812 (1333)
Q Consensus 798 ~~~g~~~~l~~~~~~ 812 (1333)
+..|+++|+.+..+.
T Consensus 225 ~~~Gt~~el~~sd~P 239 (263)
T COG1127 225 IAEGTPEELLASDDP 239 (263)
T ss_pred EEeCCHHHHHhCCCH
Confidence 999999999884443
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=361.12 Aligned_cols=206 Identities=30% Similarity=0.406 Sum_probs=172.7
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.|+++|++.+|.+. . ++++ |++|++||+++++|||||||||||++|+|+.+|++|++ .++|
T Consensus 3 ~i~l~~v~K~yg~~-------~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I-~i~g~~vt~l~P~ 73 (338)
T COG3839 3 ELELKNVRKSFGSF-------E-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEI-LIDGRDVTDLPPE 73 (338)
T ss_pred EEEEeeeEEEcCCc-------e-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEECCCCChh
Confidence 58999999999753 2 8999 99999999999999999999999999999999999996 7766
Q ss_pred --eEEEEcCCCCC-CCCCHHHHhccCCcCC-------HHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHH
Q 000720 660 --KKAYVPQSSWI-QTGTIRENILFGKDMR-------QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1333)
Q Consensus 660 --~iayv~Q~~~i-~~~Tv~enI~~g~~~~-------~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv 729 (1333)
.+|+|+|+.-+ +.+||+|||.|+.... +++.+++.+..++.+. +++++.+|||||||||
T Consensus 74 ~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~l-----------L~r~P~~LSGGQrQRV 142 (338)
T COG3839 74 KRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHL-----------LNRKPLQLSGGQRQRV 142 (338)
T ss_pred HCCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhH-----------HhcCcccCChhhHHHH
Confidence 47999999876 5679999999997654 2344445554444433 3467889999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhh-cCCEEEEEeCCeEEEccChHHHH
Q 000720 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLI 807 (1333)
Q Consensus 730 ~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~~~~l~ 807 (1333)
|||||+.++|+++|||||+|+||++.+..+-.++.+...+ +.|+|+||||..++. -+|+|++|++|+|.+.|++.|+.
T Consensus 143 AlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely 222 (338)
T COG3839 143 ALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELY 222 (338)
T ss_pred HHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHh
Confidence 9999999999999999999999999988777665443333 689999999997765 59999999999999999999998
Q ss_pred hhcchHHH
Q 000720 808 ADQNSELV 815 (1333)
Q Consensus 808 ~~~~~~~~ 815 (1333)
+++...+.
T Consensus 223 ~~P~n~fV 230 (338)
T COG3839 223 ERPANLFV 230 (338)
T ss_pred hCccchhh
Confidence 75554443
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-39 Score=347.34 Aligned_cols=206 Identities=33% Similarity=0.426 Sum_probs=169.8
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.|.++|.+..|+.- +.+.| +++|+.||.+|+.|||||||||||++|+|+..|+.|.+ .++|
T Consensus 2 ~i~i~~~~~~~~~~--------~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I-~~~~~~l~D~~~~ 72 (345)
T COG1118 2 SIRINNVKKRFGAF--------GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRI-RLNGRVLFDVSNL 72 (345)
T ss_pred ceeehhhhhhcccc--------cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceE-EECCEeccchhcc
Confidence 36778888888643 56778 99999999999999999999999999999999999986 6655
Q ss_pred -----eEEEEcCCCCC-CCCCHHHHhccCCcCC---------HHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChH
Q 000720 660 -----KKAYVPQSSWI-QTGTIRENILFGKDMR---------QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1333)
Q Consensus 660 -----~iayv~Q~~~i-~~~Tv~enI~~g~~~~---------~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGG 724 (1333)
+||||+|+.-+ +.+||.|||.||.+.. +.+..+.++.|.|..- -+..+.+||||
T Consensus 73 ~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~l-----------a~ryP~QLSGG 141 (345)
T COG1118 73 AVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGL-----------ADRYPAQLSGG 141 (345)
T ss_pred chhhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccch-----------hhcCchhcChH
Confidence 47999999865 4689999999997433 2344455666655421 12578899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhh-hcCCEEEEEeCCeEEEccC
Q 000720 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGK 802 (1333)
Q Consensus 725 QkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l-~~aD~i~vl~~G~i~~~g~ 802 (1333)
|||||||||||+.+|+++||||||+|||++.++.+-..+.+-..+ |.|+++||||.++. +.||+|++|++|+|.+.|+
T Consensus 142 QrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~ 221 (345)
T COG1118 142 QRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGP 221 (345)
T ss_pred HHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCC
Confidence 999999999999999999999999999999988775544433334 78999999999886 5699999999999999999
Q ss_pred hHHHHhhcchHHH
Q 000720 803 YEDLIADQNSELV 815 (1333)
Q Consensus 803 ~~~l~~~~~~~~~ 815 (1333)
++|+...++..+.
T Consensus 222 p~ev~~~P~s~fV 234 (345)
T COG1118 222 PDEVYDHPASRFV 234 (345)
T ss_pred HHHHhcCCCccce
Confidence 9999876655443
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=387.86 Aligned_cols=169 Identities=28% Similarity=0.368 Sum_probs=134.7
Q ss_pred cccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEE-----------ECC---------------eEEE
Q 000720 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK-----------VHG---------------KKAY 663 (1333)
Q Consensus 611 ~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~-----------~~g---------------~iay 663 (1333)
...|++ + .+++||+++|+||||||||||+++|+|+++|++|++ . ++| +++|
T Consensus 87 ~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i-~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~ 164 (590)
T PRK13409 87 GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDY-EEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVH 164 (590)
T ss_pred ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccc-cCCCcHHHHHHHhCChHHHHHHHHHhccCcceee
Confidence 467999 9 899999999999999999999999999999999986 3 333 2354
Q ss_pred EcC----CCCCCCCCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCC
Q 000720 664 VPQ----SSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNS 739 (1333)
Q Consensus 664 v~Q----~~~i~~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~ 739 (1333)
.+| .|.++.+|++||+.... ..++.+++++..++.. ..++...+||||||||++||||++++|
T Consensus 165 ~~q~~~~~p~~~~~tv~e~l~~~~--~~~~~~~~l~~l~l~~-----------~~~~~~~~LSgGe~qrv~ia~al~~~p 231 (590)
T PRK13409 165 KPQYVDLIPKVFKGKVRELLKKVD--ERGKLDEVVERLGLEN-----------ILDRDISELSGGELQRVAIAAALLRDA 231 (590)
T ss_pred cccchhhhhhhhcchHHHHHHhhh--HHHHHHHHHHHcCCch-----------hhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 444 56666789999997421 1233445555554432 224577899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCC
Q 000720 740 DVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDG 795 (1333)
Q Consensus 740 ~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G 795 (1333)
++|||||||++||+....++.+.+ +.+.+++|+|+||||++.+.. ||+|++|++|
T Consensus 232 ~lllLDEPts~LD~~~~~~l~~~i-~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 232 DFYFFDEPTSYLDIRQRLNVARLI-RELAEGKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHH-HHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 999999999999999988887654 444348999999999999866 9999999763
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-37 Score=350.48 Aligned_cols=231 Identities=36% Similarity=0.622 Sum_probs=195.5
Q ss_pred HHHHHhcccCCCCCCCCCCCCCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHH
Q 000720 565 RIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSI 643 (1333)
Q Consensus 565 RI~~fL~~~e~~~~~~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~i 643 (1333)
.+.+.|..+.+++.-. +..+.+..|+++|+++.+ .+.+++ ||++++||+++|+|+||||||||+++|
T Consensus 16 ~~~~~~~~~~~~~~~~--~~~~~~~~l~i~nls~~~----------~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I 83 (282)
T cd03291 16 GFGELLEKAKQENNDR--KHSSDDNNLFFSNLCLVG----------APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLI 83 (282)
T ss_pred HHHHHHhccccccccc--ccCCCCCeEEEEEEEEec----------ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 3445555444332212 223445679999999952 257999 999999999999999999999999999
Q ss_pred hCCCcCCCCcEEEECCeEEEEcCCCCCCCCCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCCh
Q 000720 644 LGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1333)
Q Consensus 644 lG~~~~~~G~~i~~~g~iayv~Q~~~i~~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSG 723 (1333)
+|+++|.+|++ .++|+++|++|++++++.|++||+.++......++.+.++++.+.+.+..++.+..+.+++++.+|||
T Consensus 84 ~Gl~~p~~G~I-~i~g~i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSg 162 (282)
T cd03291 84 LGELEPSEGKI-KHSGRISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSG 162 (282)
T ss_pred hCCCCCCCcEE-EECCEEEEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCH
Confidence 99999999996 89999999999999988899999998765444455667777777777778888888888889999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccCh
Q 000720 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKY 803 (1333)
Q Consensus 724 GQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~ 803 (1333)
|||||++||||++.+|+++||||||++||+.+.+.+.+.+++...+++|+|++||+++.+..||++++|++|++++.|+.
T Consensus 163 Gq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~ 242 (282)
T cd03291 163 GQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTF 242 (282)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999887877665555568999999999999888999999999999999999
Q ss_pred HHHHh
Q 000720 804 EDLIA 808 (1333)
Q Consensus 804 ~~l~~ 808 (1333)
+++.+
T Consensus 243 ~~~~~ 247 (282)
T cd03291 243 SELQS 247 (282)
T ss_pred HHHHh
Confidence 98875
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=360.23 Aligned_cols=208 Identities=32% Similarity=0.423 Sum_probs=174.8
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCe-------
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK------- 660 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~------- 660 (1333)
..++++|++.+|.+ ...++| ||+|++||+++++|||||||||+|++|+|+..|++|++ .++|+
T Consensus 4 ~~l~i~~v~k~yg~--------~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I-~l~G~~i~~lpp 74 (352)
T COG3842 4 PALEIRNVSKSFGD--------FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEI-LLDGEDITDVPP 74 (352)
T ss_pred ceEEEEeeeeecCC--------eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEECCCCCh
Confidence 46999999999973 478999 99999999999999999999999999999999999986 77764
Q ss_pred ----EEEEcCCCCCC-CCCHHHHhccCCcCC-----H---HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHH
Q 000720 661 ----KAYVPQSSWIQ-TGTIRENILFGKDMR-----Q---SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (1333)
Q Consensus 661 ----iayv~Q~~~i~-~~Tv~enI~~g~~~~-----~---~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkq 727 (1333)
+++|+|+.-+| ..||+|||.||.... + ++.++.++..++.. .-.+++.+|||||||
T Consensus 75 ~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~-----------~~~R~p~qLSGGQqQ 143 (352)
T COG3842 75 EKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEG-----------FADRKPHQLSGGQQQ 143 (352)
T ss_pred hhcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchh-----------hhhhChhhhChHHHH
Confidence 69999998765 689999999997622 1 23344444443332 223688999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhh-hcCCEEEEEeCCeEEEccChHH
Q 000720 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYED 805 (1333)
Q Consensus 728 Rv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l-~~aD~i~vl~~G~i~~~g~~~~ 805 (1333)
||||||||..+|+++|||||+|+||.+.++++-.++.+... .|.|.|+||||-++. ..+|||++|++|+|.+.|+++|
T Consensus 144 RVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~e 223 (352)
T COG3842 144 RVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEE 223 (352)
T ss_pred HHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHH
Confidence 99999999999999999999999999999888777654433 389999999999875 6699999999999999999999
Q ss_pred HHhhcchHHHH
Q 000720 806 LIADQNSELVR 816 (1333)
Q Consensus 806 l~~~~~~~~~~ 816 (1333)
+...+...+..
T Consensus 224 iY~~P~~~fVA 234 (352)
T COG3842 224 IYERPATRFVA 234 (352)
T ss_pred HhhCcchHHHH
Confidence 99866655544
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=326.67 Aligned_cols=206 Identities=24% Similarity=0.366 Sum_probs=168.8
Q ss_pred CccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCC-----CcEEEECC--
Q 000720 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRIS-----GAAIKVHG-- 659 (1333)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~-----G~~i~~~g-- 659 (1333)
...++++|.++.|.+ ...|++ |++|++++++|++||+||||||||+++....+..+ |++ .++|
T Consensus 5 ~~~~~~~~l~~yYg~--------~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v-~~~g~n 75 (253)
T COG1117 5 IPAIEVRDLNLYYGD--------KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEV-LLDGKN 75 (253)
T ss_pred cceeEecceeEEECc--------hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEE-EECCee
Confidence 357899999999974 367999 99999999999999999999999999999887766 443 4443
Q ss_pred -------------eEEEEcCCCCCCCCCHHHHhccCCcCCH---HHHHHH----HHHcccchHHHhhcCCCccccCCCCC
Q 000720 660 -------------KKAYVPQSSWIQTGTIRENILFGKDMRQ---SFYEEV----LEGCALNQDIEMWADGDLSVVGERGI 719 (1333)
Q Consensus 660 -------------~iayv~Q~~~i~~~Tv~enI~~g~~~~~---~~~~~v----~~~~~l~~d~~~~~~g~~t~ig~~g~ 719 (1333)
++|+|+|.|-.|..||+|||.+|..... ...+++ ++..+|-+... ..+.+.+.
T Consensus 76 i~~~~~d~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVK-------DrL~~sa~ 148 (253)
T COG1117 76 IYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVK-------DRLHKSAL 148 (253)
T ss_pred ccCCCCCHHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhH-------HHhhCCcc
Confidence 4699999999999999999999965332 222333 33333322221 13456788
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEE
Q 000720 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE 798 (1333)
Q Consensus 720 ~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~ 798 (1333)
.|||||+||++|||||+-+|+|+|||||||||||....+| ++++..++++-|||+|||+|+.... +|+...+.+|+++
T Consensus 149 ~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kI-EeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~Lv 227 (253)
T COG1117 149 GLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKI-EELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELV 227 (253)
T ss_pred CCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHH-HHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEE
Confidence 9999999999999999999999999999999999887766 5677788888899999999998755 9999999999999
Q ss_pred EccChHHHHhhc
Q 000720 799 QSGKYEDLIADQ 810 (1333)
Q Consensus 799 ~~g~~~~l~~~~ 810 (1333)
+.|+.+++..++
T Consensus 228 E~g~T~~iF~~P 239 (253)
T COG1117 228 EFGPTDKIFTNP 239 (253)
T ss_pred EEcCHHhhhcCc
Confidence 999999998743
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=333.07 Aligned_cols=193 Identities=31% Similarity=0.404 Sum_probs=156.4
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++..|.... .....|++ ||+|++||+++|+||+||||||||++|.|+.+|++|.+ .++|
T Consensus 2 i~~~~v~k~y~~~~----~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v-~i~g~d~~~l~~~~ 76 (226)
T COG1136 2 IELKNVSKIYGLGG----EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEV-LINGKDLTKLSEKE 76 (226)
T ss_pred cEEeeeEEEeccCC----cceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceE-EECCEEcCcCCHHH
Confidence 56788888887541 22578999 99999999999999999999999999999999999986 6665
Q ss_pred -------eEEEEcCCCC-CCCCCHHHHhccCCcCC-------HHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChH
Q 000720 660 -------KKAYVPQSSW-IQTGTIRENILFGKDMR-------QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1333)
Q Consensus 660 -------~iayv~Q~~~-i~~~Tv~enI~~g~~~~-------~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGG 724 (1333)
++|||+|+.. +++.|++|||.+...+. .++.++.++..++.+. ....++.+||||
T Consensus 77 ~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~----------~~~~~p~eLSGG 146 (226)
T COG1136 77 LAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDR----------LLKKKPSELSGG 146 (226)
T ss_pred HHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhh----------hccCCchhcCHH
Confidence 3799999975 57889999999642221 2223333333333221 112568899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhhcCCEEEEEeCCeEE
Q 000720 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLVMKDGKIE 798 (1333)
Q Consensus 725 QkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~ 798 (1333)
|||||||||||+.+|+++|.||||.+||.++++.+++.+..... .|+|+|+||||.+....|||++.|+||++.
T Consensus 147 qqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 147 QQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred HHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 99999999999999999999999999999999999886554443 488999999999999999999999999954
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-37 Score=336.72 Aligned_cols=200 Identities=54% Similarity=0.981 Sum_probs=178.5
Q ss_pred EEEeeeEEEcCCcccccCCC--cccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCeEEEEcCC
Q 000720 591 IDIEAGEYAWDAREENFKKP--TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQS 667 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~--~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~iayv~Q~ 667 (1333)
++++|++++|+.. .. .+.+++ ||++++||+++|+||||||||||+++|+|+.+|++|++ .++|+++|++|+
T Consensus 1 l~~~~l~~~~~~~-----~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i-~~~g~i~~~~q~ 74 (204)
T cd03250 1 ISVEDASFTWDSG-----EQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSV-SVPGSIAYVSQE 74 (204)
T ss_pred CEEeEEEEecCCC-----CccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeE-EEcCEEEEEecC
Confidence 4689999999643 11 368999 99999999999999999999999999999999999996 889999999999
Q ss_pred CCCCCCCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCC
Q 000720 668 SWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDP 747 (1333)
Q Consensus 668 ~~i~~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP 747 (1333)
|.+++.|++||+.++...+.+...+..+.+++.+.+...+.|..+.+++++.+||||||||++||||++.+|+++|||||
T Consensus 75 ~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP 154 (204)
T cd03250 75 PWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDP 154 (204)
T ss_pred chhccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 99999999999999866665566677777888888888888988989999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHH-hCCCeEEEecCchhhhhcCCEEEEEeCCe
Q 000720 748 FSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDAADLVLVMKDGK 796 (1333)
Q Consensus 748 ~saLD~~~~~~l~~~~~~~~-~~~~TvIlvtH~~~~l~~aD~i~vl~~G~ 796 (1333)
|++||++..+.+++.++... .+++|+|++||+++.+..||++++|++|+
T Consensus 155 ~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 155 LSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred cccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 99999999888887666544 34789999999999987799999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=341.06 Aligned_cols=210 Identities=30% Similarity=0.458 Sum_probs=178.3
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
|+++|+++.|+.. ..+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 1 i~~~~l~~~~~~~------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 73 (237)
T cd03252 1 ITFEHVRFRYKPD------GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRV-LVDGHDLALADPAW 73 (237)
T ss_pred CEEEEEEEecCCC------CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEE-EECCeehHhcCHHH
Confidence 4689999999643 2468999 99999999999999999999999999999999999986 6655
Q ss_pred ---eEEEEcCCCCCCCCCHHHHhccCCc-CCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHH
Q 000720 660 ---KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (1333)
Q Consensus 660 ---~iayv~Q~~~i~~~Tv~enI~~g~~-~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl 735 (1333)
.++|++|++++++.|++||+.++.. .......+..+...+.+.++.++.|..+..++++.+||||||||++||||+
T Consensus 74 ~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral 153 (237)
T cd03252 74 LRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARAL 153 (237)
T ss_pred HhhcEEEEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHH
Confidence 3799999999888999999988653 223333334454555555666777777777889999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccChHHHHh
Q 000720 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 736 ~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
+.+|+++||||||++||+...+.+.+. ++...+++|+|++||+++++..||++++|++|++++.|+++++.+
T Consensus 154 ~~~p~llllDEP~~~LD~~~~~~l~~~-l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 225 (237)
T cd03252 154 IHNPRILIFDEATSALDYESEHAIMRN-MHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLA 225 (237)
T ss_pred hhCCCEEEEeCCcccCCHHHHHHHHHH-HHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999998877765 444456899999999999987899999999999999999998876
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=326.16 Aligned_cols=204 Identities=26% Similarity=0.375 Sum_probs=168.0
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--------
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g-------- 659 (1333)
..|+++|++..||.+ ...|++ |++|++||+++|+||+||||||||++|.|+.+|++|++ .++|
T Consensus 2 ~~i~~~nl~k~yp~~-------~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i-~~~g~~i~~~~~ 73 (258)
T COG3638 2 MMIEVKNLSKTYPGG-------HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEI-LFNGVQITKLKG 73 (258)
T ss_pred ceEEEeeeeeecCCC-------ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceE-Eecccchhccch
Confidence 358999999999854 578999 99999999999999999999999999999999999986 6654
Q ss_pred --------eEEEEcCCCCC-CCCCHHHHhccCCcCCHHH------------HHHHHHHcccchHHHhhcCCCccccCCCC
Q 000720 660 --------KKAYVPQSSWI-QTGTIRENILFGKDMRQSF------------YEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1333)
Q Consensus 660 --------~iayv~Q~~~i-~~~Tv~enI~~g~~~~~~~------------~~~v~~~~~l~~d~~~~~~g~~t~ig~~g 718 (1333)
++||++|++-+ +..||.+|++.|+--+..+ ...++++. + .-|.....-.+.
T Consensus 74 k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aL------e--rvgi~~~A~qra 145 (258)
T COG3638 74 KELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDAL------E--RVGILDKAYQRA 145 (258)
T ss_pred HHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHH------H--HcCcHHHHHHHh
Confidence 47999999864 6789999999886433222 22222211 1 112222233677
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEecCchhhh-hcCCEEEEEeCCe
Q 000720 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFL-DAADLVLVMKDGK 796 (1333)
Q Consensus 719 ~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~-~~~~TvIlvtH~~~~l-~~aD~i~vl~~G~ 796 (1333)
.+|||||+|||+|||||+++|+++|-|||+++|||.+++++++.+.+.. ..|.|+|+.-|+++.+ ++||||+-|++|+
T Consensus 146 ~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ 225 (258)
T COG3638 146 STLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGR 225 (258)
T ss_pred ccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCc
Confidence 8999999999999999999999999999999999999999998665543 3589999999999997 5699999999999
Q ss_pred EEEccChHHHHh
Q 000720 797 IEQSGKYEDLIA 808 (1333)
Q Consensus 797 i~~~g~~~~l~~ 808 (1333)
|+++|+.+|+.+
T Consensus 226 ivfDg~~~el~~ 237 (258)
T COG3638 226 IVFDGPASELTD 237 (258)
T ss_pred EEEeCChhhhhH
Confidence 999999998644
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-37 Score=336.72 Aligned_cols=200 Identities=31% Similarity=0.446 Sum_probs=171.2
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|.+|+|+++ .+.+++ |+++++||.++|+|+||||||||++.+.|+++|++|.+ .++|
T Consensus 3 ~i~~~~l~~~y~~~-------~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v-~~~g~~~~~~~~~ 74 (235)
T COG1122 3 MIEAENLSFRYPGR-------KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV-LVDGLDTSSEKSL 74 (235)
T ss_pred eEEEEEEEEEcCCC-------ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEE-EECCeeccchhhH
Confidence 57899999999753 578999 99999999999999999999999999999999999986 5544
Q ss_pred -----eEEEEcCCC--CCCCCCHHHHhccCCcC---CH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHH
Q 000720 660 -----KKAYVPQSS--WIQTGTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1333)
Q Consensus 660 -----~iayv~Q~~--~i~~~Tv~enI~~g~~~---~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQ 725 (1333)
++|||+|+| .++..||.|.+.||... .. ++.+++++.|++.+. ..+.+.+|||||
T Consensus 75 ~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~-----------~~r~p~~LSGGq 143 (235)
T COG1122 75 LELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEEL-----------LDRPPFNLSGGQ 143 (235)
T ss_pred HHhhcceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhh-----------ccCCccccCCcc
Confidence 489999999 57889999999998642 22 334455666665432 236778999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhhc-CCEEEEEeCCeEEEccCh
Q 000720 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKY 803 (1333)
Q Consensus 726 kqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~ 803 (1333)
||||+||.+|+.+|++++||||||+||+...+.+.+.+.+...+ ++|+|++|||++.+.. ||++++|++|+++.+|++
T Consensus 144 kqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p 223 (235)
T COG1122 144 KQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDP 223 (235)
T ss_pred eeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCH
Confidence 99999999999999999999999999999999888755444444 5899999999999765 999999999999999999
Q ss_pred HHHHh
Q 000720 804 EDLIA 808 (1333)
Q Consensus 804 ~~l~~ 808 (1333)
+++.+
T Consensus 224 ~~i~~ 228 (235)
T COG1122 224 AEIFN 228 (235)
T ss_pred HHHhh
Confidence 98876
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-37 Score=307.76 Aligned_cols=197 Identities=25% Similarity=0.378 Sum_probs=161.4
Q ss_pred EEEeeeEEEcCCcccccCCCcccccCCeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCe----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK---------- 660 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~---------- 660 (1333)
+.++++.|+|... . +.-+++|++||++||+||+||||||||++|+|+..|.+|++ .++|.
T Consensus 2 l~L~~V~~~y~~~-------~--~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i-~i~g~d~t~~~P~~R 71 (231)
T COG3840 2 LALDDVRFSYGHL-------P--MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEI-LINGVDHTASPPAER 71 (231)
T ss_pred ccccceEEeeCcc-------e--EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceE-EEcCeecCcCCcccC
Confidence 4567888988653 1 21178999999999999999999999999999999999996 77763
Q ss_pred -EEEEcCCCCCCC-CCHHHHhccCCc----C---CHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHH
Q 000720 661 -KAYVPQSSWIQT-GTIRENILFGKD----M---RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQL 731 (1333)
Q Consensus 661 -iayv~Q~~~i~~-~Tv~enI~~g~~----~---~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~L 731 (1333)
++.++|+..+|. .||.+||.+|.. . ++++.+.+....++....+ +.+.+|||||||||+|
T Consensus 72 PVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~-----------RLP~~LSGGqRQRvAL 140 (231)
T COG3840 72 PVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLK-----------RLPGELSGGQRQRVAL 140 (231)
T ss_pred ChhhhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhh-----------hCccccCchHHHHHHH
Confidence 689999988875 699999999853 2 2344455555556554444 4456999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChHHHHh
Q 000720 732 ARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 732 ARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~-~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
||++.++.+|+|||||||+|||.-+.+....+.... .++.|+++|||+++.+.. +|+++++++|+|.++|+.+++..
T Consensus 141 ARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~ 219 (231)
T COG3840 141 ARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLS 219 (231)
T ss_pred HHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhc
Confidence 999999999999999999999998777665333322 357899999999998755 99999999999999999999876
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=355.97 Aligned_cols=206 Identities=27% Similarity=0.384 Sum_probs=169.3
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|++++|+.+ ...|++ ||++++||+++|+|||||||||||++|+|+.+|++|++ .++|
T Consensus 3 ~l~i~~l~~~~~~~-------~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I-~~~g~~i~~~~~~ 74 (356)
T PRK11650 3 GLKLQAVRKSYDGK-------TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEI-WIGGRVVNELEPA 74 (356)
T ss_pred EEEEEeEEEEeCCC-------CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEE-EECCEECCCCCHH
Confidence 38899999999422 358999 99999999999999999999999999999999999986 6665
Q ss_pred --eEEEEcCCCCCC-CCCHHHHhccCCcC---CH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHH
Q 000720 660 --KKAYVPQSSWIQ-TGTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1333)
Q Consensus 660 --~iayv~Q~~~i~-~~Tv~enI~~g~~~---~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv 729 (1333)
.+|||+|++.++ +.||+|||.|+... .+ ++.+++++..++.+ ..++++.+|||||||||
T Consensus 75 ~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-----------~~~~~~~~LSgGq~QRv 143 (356)
T PRK11650 75 DRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEP-----------LLDRKPRELSGGQRQRV 143 (356)
T ss_pred HCCEEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChh-----------HhhCChhhCCHHHHHHH
Confidence 489999999876 57999999987542 11 12233344444322 23467789999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhh-cCCEEEEEeCCeEEEccChHHHH
Q 000720 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLI 807 (1333)
Q Consensus 730 ~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~~~~l~ 807 (1333)
+|||||+.+|+++|||||||+||+..++++.+.+.+...+ +.|+|+||||.+++. .||+|++|++|++++.|+++++.
T Consensus 144 alARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~ 223 (356)
T PRK11650 144 AMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVY 223 (356)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHH
Confidence 9999999999999999999999999999887765443333 799999999998875 59999999999999999999998
Q ss_pred hhcchHH
Q 000720 808 ADQNSEL 814 (1333)
Q Consensus 808 ~~~~~~~ 814 (1333)
.++...+
T Consensus 224 ~~p~~~~ 230 (356)
T PRK11650 224 EKPASTF 230 (356)
T ss_pred hCCccHH
Confidence 7544333
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=340.82 Aligned_cols=220 Identities=29% Similarity=0.363 Sum_probs=188.0
Q ss_pred CccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC-------
Q 000720 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (1333)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g------- 659 (1333)
...++++|++++|+.. ....+++ ||++++||+++|+|+||||||||+++|+|+++|.+|++ .++|
T Consensus 17 ~~~i~~~~l~~~~~~~------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~i~g~~i~~~~ 89 (257)
T cd03288 17 GGEIKIHDLCVRYENN------LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKI-VIDGIDISKLP 89 (257)
T ss_pred CceEEEEEEEEEeCCC------CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeE-EECCEEhhhCC
Confidence 3569999999999753 2458999 99999999999999999999999999999999999986 6554
Q ss_pred ------eEEEEcCCCCCCCCCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHH
Q 000720 660 ------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733 (1333)
Q Consensus 660 ------~iayv~Q~~~i~~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LAR 733 (1333)
.++|++|+|++++.|++||+............+.++..++.+.++.++.|.++.+++++.+||||||||++|||
T Consensus 90 ~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~lar 169 (257)
T cd03288 90 LHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLAR 169 (257)
T ss_pred HHHHhhhEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHH
Confidence 47999999999889999999765433444556666777777778888888889999999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccChHHHHhhcchH
Q 000720 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSE 813 (1333)
Q Consensus 734 Al~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~~~l~~~~~~~ 813 (1333)
|++++|++++|||||++||+++.+.+.+ +++...++.|+|++||+++.+..||+|++|++|++++.|+++++.+.....
T Consensus 170 al~~~p~llllDEPt~gLD~~~~~~l~~-~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~ 248 (257)
T cd03288 170 AFVRKSSILIMDEATASIDMATENILQK-VVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGV 248 (257)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHH-HHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchH
Confidence 9999999999999999999998776655 445555689999999999998889999999999999999999887633333
Q ss_pred HH
Q 000720 814 LV 815 (1333)
Q Consensus 814 ~~ 815 (1333)
+.
T Consensus 249 ~~ 250 (257)
T cd03288 249 FA 250 (257)
T ss_pred HH
Confidence 33
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=337.70 Aligned_cols=211 Identities=31% Similarity=0.466 Sum_probs=179.5
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|+++.|+.. ...+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 1 l~i~~l~~~~~~~-----~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~~~~~~~~~ 74 (238)
T cd03249 1 IEFKNVSFRYPSR-----PDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI-LLDGVDIRDLNLRW 74 (238)
T ss_pred CeEEEEEEecCCC-----CCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEE-EECCEehhhcCHHH
Confidence 4689999999753 23468999 99999999999999999999999999999999999986 6655
Q ss_pred ---eEEEEcCCCCCCCCCHHHHhccCCcC-CHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHH
Q 000720 660 ---KKAYVPQSSWIQTGTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (1333)
Q Consensus 660 ---~iayv~Q~~~i~~~Tv~enI~~g~~~-~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl 735 (1333)
.++|++|++.+++.|++||+.++... ..+...+..+.+++.+.++.++.|..+..+.++.+||||||||++||||+
T Consensus 75 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al 154 (238)
T cd03249 75 LRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARAL 154 (238)
T ss_pred HHhhEEEECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHH
Confidence 38999999988888999999987543 23334445566666666677777777778888999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccChHHHHh
Q 000720 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 736 ~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
+.+|+++||||||++||++.++.+.+.+ +...+++|+|++||+++.++.||++++|++|++++.|+.+++..
T Consensus 155 ~~~p~llllDEP~~gLD~~~~~~l~~~l-~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (238)
T cd03249 155 LRNPKILLLDEATSALDAESEKLVQEAL-DRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMA 226 (238)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHH-HHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhh
Confidence 9999999999999999999988777644 44447899999999999988899999999999999999888765
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=336.07 Aligned_cols=210 Identities=29% Similarity=0.466 Sum_probs=181.4
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|++++|+.+ .+.+++ ||++++||+++|+||||||||||+++|+|+.+|.+|++ .++|
T Consensus 2 ~l~~~~l~~~~~~~-------~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~ 73 (229)
T cd03254 2 EIEFENVNFSYDEK-------KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQI-LIDGIDIRDISRK 73 (229)
T ss_pred eEEEEEEEEecCCC-------CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEE-EECCEeHHHcCHH
Confidence 47899999999632 358999 99999999999999999999999999999999999986 6654
Q ss_pred ----eEEEEcCCCCCCCCCHHHHhccCCcC-CHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHH
Q 000720 660 ----KKAYVPQSSWIQTGTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734 (1333)
Q Consensus 660 ----~iayv~Q~~~i~~~Tv~enI~~g~~~-~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARA 734 (1333)
.++|++|+++++..|++||+.++... ......+.++.+++.+.++.++.|..+..+.++.+||||||||++||||
T Consensus 74 ~~~~~i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~a 153 (229)
T cd03254 74 SLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARA 153 (229)
T ss_pred HHhhhEEEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHH
Confidence 37999999998888999999987543 3344555666677777777777788888888999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccChHHHHh
Q 000720 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 735 l~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
++++|+++||||||++||+.+.+.+.+. ++...+++|+|++||+++.++.||++++|++|++++.|+.+++.+
T Consensus 154 l~~~p~llllDEP~~~LD~~~~~~l~~~-l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 154 MLRDPKILILDEATSNIDTETEKLIQEA-LEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA 226 (229)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHH-HHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 9999999999999999999998877664 444556899999999999987899999999999999998887754
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-37 Score=357.69 Aligned_cols=196 Identities=29% Similarity=0.366 Sum_probs=160.2
Q ss_pred cccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC-----------------eEEEEcCCCCCCC
Q 000720 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-----------------KKAYVPQSSWIQT 672 (1333)
Q Consensus 611 ~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g-----------------~iayv~Q~~~i~~ 672 (1333)
...++| ||+|++||+++|+||||||||||+++|+|+++|++|++ .++| +++||+|++++++
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I-~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~ 84 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQI-FIDGENIMKQSPVELREVRRKKIGMVFQQFALFP 84 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEE-EECCEECCcCCHHHHHHHHhCcEEEEECCCcCCC
Confidence 457899 99999999999999999999999999999999999986 5544 5899999999876
Q ss_pred -CCHHHHhccCCcC---C-HHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCC
Q 000720 673 -GTIRENILFGKDM---R-QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDP 747 (1333)
Q Consensus 673 -~Tv~enI~~g~~~---~-~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP 747 (1333)
.||+|||.|+.++ . ++..+++.+.+... |.....++++.+|||||||||+|||||+++|+++|||||
T Consensus 85 ~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~v--------gL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP 156 (363)
T TIGR01186 85 HMTILQNTSLGPELLGWPEQERKEKALELLKLV--------GLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEA 156 (363)
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc--------CCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 6999999987543 1 22233333322211 112234578889999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhh-hcCCEEEEEeCCeEEEccChHHHHhhcchHHH
Q 000720 748 FSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDLIADQNSELV 815 (1333)
Q Consensus 748 ~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l-~~aD~i~vl~~G~i~~~g~~~~l~~~~~~~~~ 815 (1333)
|||||+.+++++.+.+.+... .++|+|+||||++++ ..||+|++|++|++++.|+++++..++..++.
T Consensus 157 ~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~~ 226 (363)
T TIGR01186 157 FSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYV 226 (363)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHHH
Confidence 999999999999887665443 389999999999986 45999999999999999999999874444443
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=353.13 Aligned_cols=204 Identities=25% Similarity=0.325 Sum_probs=166.3
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
|+++|++++|+..+ ...+.|+| ||++++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 2 I~~~~lsk~y~~~~----~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I-~i~G~~i~~~~~~~ 76 (343)
T TIGR02314 2 IKLSNITKVFHQGT----KTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSV-IVDGQDLTTLSNSE 76 (343)
T ss_pred EEEEEEEEEECCCC----cceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE-EECCEECCcCCHHH
Confidence 78999999996430 12468999 99999999999999999999999999999999999986 5544
Q ss_pred ------eEEEEcCCCCCC-CCCHHHHhccCCcC---CHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHH
Q 000720 660 ------KKAYVPQSSWIQ-TGTIRENILFGKDM---RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1333)
Q Consensus 660 ------~iayv~Q~~~i~-~~Tv~enI~~g~~~---~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQ 725 (1333)
+++|+||++.++ +.|++||+.++... ++. +..+.++..++. ...+..+.+|||||
T Consensus 77 l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~-----------~~~~~~~~~LSgGq 145 (343)
T TIGR02314 77 LTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLG-----------DKHDSYPSNLSGGQ 145 (343)
T ss_pred HHHHhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-----------hhhhCChhhCCHHH
Confidence 489999998876 57999999886431 221 122333333332 12346788999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhhc-CCEEEEEeCCeEEEccCh
Q 000720 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKY 803 (1333)
Q Consensus 726 kqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~ 803 (1333)
||||+|||||+.+|+++|||||||+||+.+...+.+.+.+...+ +.|+|++||+++.+.. ||+|++|++|+|++.|++
T Consensus 146 kQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~ 225 (343)
T TIGR02314 146 KQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTV 225 (343)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 99999999999999999999999999999998887654433333 7999999999999865 999999999999999999
Q ss_pred HHHHhhc
Q 000720 804 EDLIADQ 810 (1333)
Q Consensus 804 ~~l~~~~ 810 (1333)
+++..++
T Consensus 226 ~~v~~~p 232 (343)
T TIGR02314 226 SEIFSHP 232 (343)
T ss_pred HHHHcCC
Confidence 9997643
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=335.87 Aligned_cols=210 Identities=31% Similarity=0.490 Sum_probs=180.4
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
|+++|++++|+.. ..+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 1 i~~~~l~~~~~~~------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~ 73 (234)
T cd03251 1 VEFKNVTFRYPGD------GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI-LIDGHDVRDYTLAS 73 (234)
T ss_pred CEEEEEEEEeCCC------CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEE-EECCEEhhhCCHHH
Confidence 4689999999643 2368999 99999999999999999999999999999999999986 6654
Q ss_pred ---eEEEEcCCCCCCCCCHHHHhccCCc-CCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHH
Q 000720 660 ---KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (1333)
Q Consensus 660 ---~iayv~Q~~~i~~~Tv~enI~~g~~-~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl 735 (1333)
.++|++|++++++.|++||+.++.. .......+..+.+.+.+.++.++.|..+..+.++.+||||||||++||||+
T Consensus 74 ~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al 153 (234)
T cd03251 74 LRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARAL 153 (234)
T ss_pred HHhhEEEeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHH
Confidence 3799999999888999999998753 233444555566667777777777777788889999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccChHHHHh
Q 000720 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 736 ~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
+.+|+++||||||++||+.+.+.+.+ +++...+++|+|++||+++.++.||++++|++|++++.|+++++..
T Consensus 154 ~~~p~lllLDEP~~~LD~~~~~~l~~-~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 225 (234)
T cd03251 154 LKDPPILILDEATSALDTESERLVQA-ALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLA 225 (234)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHH-HHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHH
Confidence 99999999999999999999887765 4555556899999999999987899999999999999999888765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=335.32 Aligned_cols=209 Identities=33% Similarity=0.518 Sum_probs=180.0
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++++|+.+ ...+++ |+++++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 1 l~~~~l~~~~~~~-------~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v-~~~g~~~~~~~~~~ 72 (236)
T cd03253 1 IEFENVTFAYDPG-------RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI-LIDGQDIREVTLDS 72 (236)
T ss_pred CEEEEEEEEeCCC-------CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEE-EECCEEhhhCCHHH
Confidence 4689999999632 358999 99999999999999999999999999999999999986 6655
Q ss_pred ---eEEEEcCCCCCCCCCHHHHhccCCcC-CHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHH
Q 000720 660 ---KKAYVPQSSWIQTGTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (1333)
Q Consensus 660 ---~iayv~Q~~~i~~~Tv~enI~~g~~~-~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl 735 (1333)
.++|++|++++++.|++||+.++... ......+.++.+.+.+.++.++.|..+.+++++.+||||||||++||||+
T Consensus 73 ~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL 152 (236)
T cd03253 73 LRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAI 152 (236)
T ss_pred HHhhEEEECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHH
Confidence 37999999999899999999987532 23334455666677777788888888888889999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccChHHHHh
Q 000720 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 736 ~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
+++|+++||||||++||+++.+.+.+.+ ....+++|+|++||+.+.+..||++++|++|++++.|+.+++..
T Consensus 153 ~~~p~llllDEP~~~LD~~~~~~l~~~l-~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~ 224 (236)
T cd03253 153 LKNPPILLLDEATSALDTHTEREIQAAL-RDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLA 224 (236)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHH-HHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 9999999999999999999988777644 44444899999999999987899999999999999999888765
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=340.35 Aligned_cols=191 Identities=28% Similarity=0.416 Sum_probs=160.9
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCe-------
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK------- 660 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~------- 660 (1333)
..+++++.+..|+. ...+++ ||++++||+.|++|+||+|||||+++|.|.++|++|++ .++|+
T Consensus 3 ~~l~~~~itK~f~~--------~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI-~v~G~~v~~~sP 73 (501)
T COG3845 3 PALEMRGITKRFPG--------VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEI-RVDGKEVRIKSP 73 (501)
T ss_pred ceEEEeccEEEcCC--------EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceE-EECCEEeccCCH
Confidence 46899999999973 345677 99999999999999999999999999999999999997 88875
Q ss_pred -------EEEEcCCCCC-CCCCHHHHhccCCcCC------H----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCC
Q 000720 661 -------KAYVPQSSWI-QTGTIRENILFGKDMR------Q----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1333)
Q Consensus 661 -------iayv~Q~~~i-~~~Tv~enI~~g~~~~------~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LS 722 (1333)
||+|.|++-+ .+.||.|||..|.+-. . ++.++..+..++.-| ..++..+||
T Consensus 74 ~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vd-----------p~~~V~dLs 142 (501)
T COG3845 74 RDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVD-----------PDAKVADLS 142 (501)
T ss_pred HHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCC-----------ccceeecCC
Confidence 6999999865 6779999999997532 1 222333333343322 235778999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEE
Q 000720 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1333)
Q Consensus 723 GGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~ 799 (1333)
=||||||.|-+|||++|+++||||||+-|-|...+++|+.+.+....|+|||+|||.++++.. ||++-||++|+++.
T Consensus 143 VG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvg 220 (501)
T COG3845 143 VGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVG 220 (501)
T ss_pred cchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEe
Confidence 999999999999999999999999999999999999998766666679999999999998765 99999999999764
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=331.76 Aligned_cols=205 Identities=29% Similarity=0.398 Sum_probs=179.3
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|++++|+.. ..+.+++ ||++++||+++|+||||||||||+++|+|+.+|.+|++ .++|
T Consensus 2 ~l~~~~l~~~~~~~------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~ 74 (221)
T cd03244 2 DIEFKNVSLRYRPN------LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSI-LIDGVDISKIGLH 74 (221)
T ss_pred cEEEEEEEEecCCC------CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEE-EECCEEhHhCCHH
Confidence 47899999999743 2468999 99999999999999999999999999999999999986 5554
Q ss_pred ----eEEEEcCCCCCCCCCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHH
Q 000720 660 ----KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (1333)
Q Consensus 660 ----~iayv~Q~~~i~~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl 735 (1333)
.++|++|++.+++.|++||+.+......++..+.++..++.+.+..++.|..+..++++.+||||||||++||||+
T Consensus 75 ~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral 154 (221)
T cd03244 75 DLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARAL 154 (221)
T ss_pred HHhhhEEEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHH
Confidence 4799999999888999999987655555555666777777777777888999989999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccC
Q 000720 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGK 802 (1333)
Q Consensus 736 ~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~ 802 (1333)
+.+|+++||||||++||+.+++.+.+ +++...+++|+|++||+++.++.||++++|++|++++.|+
T Consensus 155 ~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 155 LRKSKILVLDEATASVDPETDALIQK-TIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHH-HHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 99999999999999999999887765 4455556789999999999988899999999999998775
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=319.24 Aligned_cols=205 Identities=25% Similarity=0.383 Sum_probs=168.8
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|.++.|+... ...+.+++ +|++.+||.++|+|++|||||||.++|+|+.+|++|++ .++|
T Consensus 3 ~l~v~nl~~~y~~~~----~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I-~~~G~~~~~~~~~ 77 (252)
T COG1124 3 LLSVRNLSIVYGGGK----FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSI-LLDGKPLAPKKRA 77 (252)
T ss_pred eEEEeceEEEecCCc----chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceE-EECCcccCccccc
Confidence 588999999998651 11258999 99999999999999999999999999999999999997 7766
Q ss_pred -----eEEEEcCCCC--C-CCCCHHHHhccCCcC-----CHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHH
Q 000720 660 -----KKAYVPQSSW--I-QTGTIRENILFGKDM-----RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1333)
Q Consensus 660 -----~iayv~Q~~~--i-~~~Tv~enI~~g~~~-----~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQk 726 (1333)
.+-+|+|+|. + +..||++-|.=+... .+++..++++..++.+. ...+++.+||||||
T Consensus 78 ~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~----------~l~R~P~eLSGGQ~ 147 (252)
T COG1124 78 KAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPS----------FLDRRPHELSGGQR 147 (252)
T ss_pred hhhccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHH----------HHhcCchhcChhHH
Confidence 3679999985 2 456998888643221 12334555666666543 23467889999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChH
Q 000720 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYE 804 (1333)
Q Consensus 727 qRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~ 804 (1333)
|||||||||..+|+++|+|||||+||+.++.++.+.+.+... ++-|.|+||||+..+.+ ||||+||++|+|++.++.+
T Consensus 148 QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~ 227 (252)
T COG1124 148 QRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTE 227 (252)
T ss_pred HHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechh
Confidence 999999999999999999999999999999999875544322 46799999999999987 9999999999999999999
Q ss_pred HHHhh
Q 000720 805 DLIAD 809 (1333)
Q Consensus 805 ~l~~~ 809 (1333)
++...
T Consensus 228 ~l~~~ 232 (252)
T COG1124 228 ELLSH 232 (252)
T ss_pred hhhcC
Confidence 98764
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-36 Score=350.19 Aligned_cols=205 Identities=27% Similarity=0.351 Sum_probs=168.0
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|++++|.. ...+++ ||++++||+++|+|||||||||||++|+|+.+|++|++ .++|
T Consensus 6 ~l~~~~l~~~~~~--------~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I-~~~g~~i~~~~~~ 76 (351)
T PRK11432 6 FVVLKNITKRFGS--------NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQI-FIDGEDVTHRSIQ 76 (351)
T ss_pred EEEEEeEEEEECC--------eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEE-EECCEECCCCCHH
Confidence 6899999999963 357999 99999999999999999999999999999999999986 6665
Q ss_pred --eEEEEcCCCCCC-CCCHHHHhccCCcC---CH-H---HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHH
Q 000720 660 --KKAYVPQSSWIQ-TGTIRENILFGKDM---RQ-S---FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1333)
Q Consensus 660 --~iayv~Q~~~i~-~~Tv~enI~~g~~~---~~-~---~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv 729 (1333)
++|||+|++.++ ..||+|||.|+... .+ + +.++.++..++. ...++++.+|||||||||
T Consensus 77 ~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~-----------~~~~r~~~~LSgGq~QRV 145 (351)
T PRK11432 77 QRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLA-----------GFEDRYVDQISGGQQQRV 145 (351)
T ss_pred HCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCc-----------hhhcCChhhCCHHHHHHH
Confidence 479999999876 56999999997532 11 1 222233333322 123467889999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhh-cCCEEEEEeCCeEEEccChHHHH
Q 000720 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLI 807 (1333)
Q Consensus 730 ~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~~~~l~ 807 (1333)
+|||||+.+|+++|||||||+||+..++++.+.+.+...+ ++|+|+||||.+++. .||+|++|++|+|++.|+++++.
T Consensus 146 aLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~ 225 (351)
T PRK11432 146 ALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELY 225 (351)
T ss_pred HHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999988887654433333 799999999999874 59999999999999999999998
Q ss_pred hhcchHH
Q 000720 808 ADQNSEL 814 (1333)
Q Consensus 808 ~~~~~~~ 814 (1333)
..+...+
T Consensus 226 ~~p~~~~ 232 (351)
T PRK11432 226 RQPASRF 232 (351)
T ss_pred hCCCchH
Confidence 7544333
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-36 Score=350.92 Aligned_cols=205 Identities=29% Similarity=0.356 Sum_probs=169.1
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|++++|+. ...+++ ||++++||+++|+|||||||||||++|+|+.+|++|++ .++|
T Consensus 4 ~l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I-~i~g~~~~~~~~~ 74 (353)
T TIGR03265 4 YLSIDNIRKRFGA--------FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTI-YQGGRDITRLPPQ 74 (353)
T ss_pred EEEEEEEEEEeCC--------eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEE-EECCEECCCCCHH
Confidence 5899999999963 357899 99999999999999999999999999999999999986 6665
Q ss_pred --eEEEEcCCCCCC-CCCHHHHhccCCcC---CH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHH
Q 000720 660 --KKAYVPQSSWIQ-TGTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1333)
Q Consensus 660 --~iayv~Q~~~i~-~~Tv~enI~~g~~~---~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv 729 (1333)
.+|||+|++.++ ..||+||+.|+... ++ .+.+++++..++. ...++++.+|||||||||
T Consensus 75 ~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~-----------~~~~~~~~~LSgGq~QRv 143 (353)
T TIGR03265 75 KRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLP-----------GSERKYPGQLSGGQQQRV 143 (353)
T ss_pred HCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-----------chhhCChhhCCHHHHHHH
Confidence 479999999876 57999999987432 11 1223333333332 233467889999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhh-cCCEEEEEeCCeEEEccChHHHH
Q 000720 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLI 807 (1333)
Q Consensus 730 ~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~~~~l~ 807 (1333)
+|||||+.+|+++|||||||+||+..++++.+.+.+...+ +.|+|+||||.+++. .||+|++|++|++++.|+++++.
T Consensus 144 aLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~ 223 (353)
T TIGR03265 144 ALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIY 223 (353)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999988887655443333 789999999999875 59999999999999999999998
Q ss_pred hhcchHH
Q 000720 808 ADQNSEL 814 (1333)
Q Consensus 808 ~~~~~~~ 814 (1333)
+++...+
T Consensus 224 ~~p~~~~ 230 (353)
T TIGR03265 224 RHPATPF 230 (353)
T ss_pred hCCCCHH
Confidence 7544444
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-36 Score=333.81 Aligned_cols=198 Identities=28% Similarity=0.366 Sum_probs=160.5
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 1 l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i-~~~g~~~~~~~~~~ 71 (235)
T cd03261 1 IELRGLTKSFGG--------RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEV-LIDGEDISGLSEAE 71 (235)
T ss_pred CeEEEEEEEECC--------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEEccccChhh
Confidence 468899999953 358999 99999999999999999999999999999999999986 5543
Q ss_pred ------eEEEEcCCCCCCC-CCHHHHhccCCc----CCHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChH
Q 000720 660 ------KKAYVPQSSWIQT-GTIRENILFGKD----MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1333)
Q Consensus 660 ------~iayv~Q~~~i~~-~Tv~enI~~g~~----~~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGG 724 (1333)
.++|++|++.++. .|++||+.++.. .... +..+.++.+++. ...+.++.+||||
T Consensus 72 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgG 140 (235)
T cd03261 72 LYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLR-----------GAEDLYPAELSGG 140 (235)
T ss_pred HHHHhcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCc-----------hhhcCChhhCCHH
Confidence 3799999987765 599999987632 1211 122233333332 1234667899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhhc-CCEEEEEeCCeEEEccC
Q 000720 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGK 802 (1333)
Q Consensus 725 QkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~ 802 (1333)
||||++||||++++|+++||||||++||+.+.+.+.+.+.+... .++|||++||+++++.. ||+|++|++|++++.|+
T Consensus 141 ~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~ 220 (235)
T cd03261 141 MKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGT 220 (235)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecC
Confidence 99999999999999999999999999999998888765443333 37999999999998765 99999999999999999
Q ss_pred hHHHHh
Q 000720 803 YEDLIA 808 (1333)
Q Consensus 803 ~~~l~~ 808 (1333)
++++..
T Consensus 221 ~~~~~~ 226 (235)
T cd03261 221 PEELRA 226 (235)
T ss_pred HHHHcC
Confidence 888764
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=327.86 Aligned_cols=204 Identities=33% Similarity=0.523 Sum_probs=175.2
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|.++.|+.. ..+.+++ ||++++|++++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 2 ~l~~~~l~~~~~~~------~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~~~~~~~~ 74 (220)
T cd03245 2 RIEFRNVSFSYPNQ------EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSV-LLDGTDIRQLDPA 74 (220)
T ss_pred eEEEEEEEEEcCCC------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeE-EECCEEhHHCCHH
Confidence 47899999999642 2468999 99999999999999999999999999999999999986 6655
Q ss_pred ----eEEEEcCCCCCCCCCHHHHhccCCcC-CHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHH
Q 000720 660 ----KKAYVPQSSWIQTGTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734 (1333)
Q Consensus 660 ----~iayv~Q~~~i~~~Tv~enI~~g~~~-~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARA 734 (1333)
.++|++|+++++..|++||+.++... .+....+.++.+++.+.++..|.|..|.+.+...+||||||||++||||
T Consensus 75 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~a 154 (220)
T cd03245 75 DLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARA 154 (220)
T ss_pred HHHhhEEEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHH
Confidence 37999999988778999999886432 3345566777777877777788888888888899999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEcc
Q 000720 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSG 801 (1333)
Q Consensus 735 l~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g 801 (1333)
++.+|+++||||||++||+.+.+.+.+. ++...+++|+|++||+++.++.||++++|++|++++.|
T Consensus 155 l~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 155 LLNDPPILLLDEPTSAMDMNSEERLKER-LRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHH-HHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 9999999999999999999998877764 44444458999999999988779999999999998654
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=344.57 Aligned_cols=207 Identities=27% Similarity=0.423 Sum_probs=167.1
Q ss_pred CccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC-------
Q 000720 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (1333)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g------- 659 (1333)
+..|+++|++|+|+.... ...+.|+| ||+|++||+++|+|+||||||||+++|+|+++|++|++ .++|
T Consensus 19 ~~~l~~~nl~~~y~~~~~---~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I-~i~g~~~~~~~ 94 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQE---NELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTI-QVGDIYIGDKK 94 (320)
T ss_pred CceEEEEeEEEEeCCCCc---ccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeE-EECCEEccccc
Confidence 356999999999974300 12368999 99999999999999999999999999999999999986 5432
Q ss_pred ----------------------eEEEEcCCC--CCCCCCHHHHhccCCc---CCHH----HHHHHHHHcccchHHHhhcC
Q 000720 660 ----------------------KKAYVPQSS--WIQTGTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWAD 708 (1333)
Q Consensus 660 ----------------------~iayv~Q~~--~i~~~Tv~enI~~g~~---~~~~----~~~~v~~~~~l~~d~~~~~~ 708 (1333)
+++||+|+| .+++.|++|||.|+.. .+.+ +.++.++.+++.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~-------- 166 (320)
T PRK13631 95 NNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLD-------- 166 (320)
T ss_pred ccccccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCC--------
Confidence 379999998 6788899999998742 1211 112222222221
Q ss_pred CCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhh-hcCC
Q 000720 709 GDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFL-DAAD 787 (1333)
Q Consensus 709 g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l-~~aD 787 (1333)
....++++.+||||||||++|||||+++|+++||||||++||+.+.+.+.+.+.+...+++|||++||+++++ ..||
T Consensus 167 --~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~ad 244 (320)
T PRK13631 167 --DSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVAD 244 (320)
T ss_pred --hhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCC
Confidence 1234578899999999999999999999999999999999999998888765443334689999999999987 4699
Q ss_pred EEEEEeCCeEEEccChHHHHh
Q 000720 788 LVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 788 ~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
+|++|++|++++.|+++++..
T Consensus 245 ri~vl~~G~i~~~g~~~~~~~ 265 (320)
T PRK13631 245 EVIVMDKGKILKTGTPYEIFT 265 (320)
T ss_pred EEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999998875
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=342.19 Aligned_cols=197 Identities=23% Similarity=0.316 Sum_probs=160.8
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCe-------
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK------- 660 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~------- 660 (1333)
..++++|.+.+|+. ...|++ ||++.+||+++++|.||||||||+|.|.|.++|++|++ .++|+
T Consensus 7 ~ll~~~~i~K~Fgg--------V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I-~~~G~~~~~~sp 77 (500)
T COG1129 7 PLLELRGISKSFGG--------VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEI-LIDGKPVAFSSP 77 (500)
T ss_pred ceeeeecceEEcCC--------ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceE-EECCEEccCCCH
Confidence 35889999999974 478999 99999999999999999999999999999999999986 88874
Q ss_pred -------EEEEcCCCCC-CCCCHHHHhccCCcCCH-------HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHH
Q 000720 661 -------KAYVPQSSWI-QTGTIRENILFGKDMRQ-------SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1333)
Q Consensus 661 -------iayv~Q~~~i-~~~Tv~enI~~g~~~~~-------~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQ 725 (1333)
|+.|.|+..+ ++.||.|||.+|++... ...++..+ .+ ++.+ |.......+..+||+||
T Consensus 78 ~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~--~~---l~~l--g~~~~~~~~v~~Lsiaq 150 (500)
T COG1129 78 RDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRAR--EL---LARL--GLDIDPDTLVGDLSIAQ 150 (500)
T ss_pred HHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHH--HH---HHHc--CCCCChhhhhhhCCHHH
Confidence 6899999864 78899999999876432 11111111 11 1111 11011346778999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeEEEcc
Q 000720 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSG 801 (1333)
Q Consensus 726 kqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g 801 (1333)
||-|+||||++.++++++||||||+|+.+..+++|+.+.+...+|.++|+|||+++++. .||+|.||+||+.+..+
T Consensus 151 rQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~ 227 (500)
T COG1129 151 RQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTR 227 (500)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeec
Confidence 99999999999999999999999999999999999865555567999999999999875 59999999999988653
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=340.79 Aligned_cols=203 Identities=26% Similarity=0.405 Sum_probs=165.5
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
|+++|++|+|+.... ...+.++| ||+|++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 2 i~~~~v~~~y~~~~~---~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~i~~~~~~~ 77 (288)
T PRK13643 2 IKFEKVNYTYQPNSP---FASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKV-TVGDIVVSSTSKQK 77 (288)
T ss_pred EEEEEEEEEeCCCCc---ccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEE-EECCEECccccccc
Confidence 789999999974300 01358999 99999999999999999999999999999999999986 5554
Q ss_pred -------eEEEEcCCC--CCCCCCHHHHhccCCcC---CH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCCh
Q 000720 660 -------KKAYVPQSS--WIQTGTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1333)
Q Consensus 660 -------~iayv~Q~~--~i~~~Tv~enI~~g~~~---~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSG 723 (1333)
.++|++|+| .++..|+.||+.|+... .. .++.+.++..++..+ ..++.+.+|||
T Consensus 78 ~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~----------~~~~~~~~LSg 147 (288)
T PRK13643 78 EIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADE----------FWEKSPFELSG 147 (288)
T ss_pred cHHHHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChh----------hccCCcccCCH
Confidence 369999998 67788999999987431 11 223334444443211 22467789999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEecCchhhhh-cCCEEEEEeCCeEEEcc
Q 000720 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSG 801 (1333)
Q Consensus 724 GQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~-~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g 801 (1333)
|||||++||||++.+|+++||||||++||+.+++.+.+. ++.+ .+++|||++|||++++. .||+|++|++|++++.|
T Consensus 148 GqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~-l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g 226 (288)
T PRK13643 148 GQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQL-FESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCG 226 (288)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHH-HHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999998887764 4443 35899999999999885 59999999999999999
Q ss_pred ChHHHHh
Q 000720 802 KYEDLIA 808 (1333)
Q Consensus 802 ~~~~l~~ 808 (1333)
+++++..
T Consensus 227 ~~~~~~~ 233 (288)
T PRK13643 227 TPSDVFQ 233 (288)
T ss_pred CHHHHHc
Confidence 9999865
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=348.60 Aligned_cols=203 Identities=27% Similarity=0.364 Sum_probs=167.7
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCC--CcEEEECC------
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRIS--GAAIKVHG------ 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~--G~~i~~~g------ 659 (1333)
..++++|++++|.. ...+++ ||++++||+++|+|||||||||||++|+|+.+|++ |++ .++|
T Consensus 4 ~~l~~~~l~~~~~~--------~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i-~~~g~~~~~~ 74 (362)
T TIGR03258 4 GGIRIDHLRVAYGA--------NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRI-AIADRDLTHA 74 (362)
T ss_pred eEEEEEEEEEEECC--------eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEE-EECCEECCCC
Confidence 35899999999963 257999 99999999999999999999999999999999999 986 6654
Q ss_pred -----eEEEEcCCCCCC-CCCHHHHhccCCcC---CH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHH
Q 000720 660 -----KKAYVPQSSWIQ-TGTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1333)
Q Consensus 660 -----~iayv~Q~~~i~-~~Tv~enI~~g~~~---~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQk 726 (1333)
.++||+|++.++ ..||+|||.|+... .+ .+.+++++..++. ...++++.+||||||
T Consensus 75 ~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~-----------~~~~~~~~~LSgGq~ 143 (362)
T TIGR03258 75 PPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLG-----------DAAAHLPAQLSGGMQ 143 (362)
T ss_pred CHHHCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC-----------chhhCChhhCCHHHH
Confidence 479999999876 56999999987432 11 1233333433332 223467889999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCeEEEecCchhhhh-cCCEEEEEeCCeEEEccCh
Q 000720 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKY 803 (1333)
Q Consensus 727 qRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~--~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~~ 803 (1333)
|||+|||||+.+|+++|||||||+||+..++++.+.+.+...+ |.|+|+||||++++. .||+|++|++|++++.|++
T Consensus 144 QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~ 223 (362)
T TIGR03258 144 QRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEP 223 (362)
T ss_pred HHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 9999999999999999999999999999988887755443333 789999999999875 4999999999999999999
Q ss_pred HHHHhhcc
Q 000720 804 EDLIADQN 811 (1333)
Q Consensus 804 ~~l~~~~~ 811 (1333)
+++..++.
T Consensus 224 ~~~~~~p~ 231 (362)
T TIGR03258 224 QALYDAPA 231 (362)
T ss_pred HHHHhCcC
Confidence 99987543
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=330.72 Aligned_cols=198 Identities=31% Similarity=0.402 Sum_probs=161.4
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++++|+. .+++++ |+++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 3 l~~~~l~~~~~~--------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 73 (239)
T cd03296 3 IEVRNVSKRFGD--------FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTI-LFGGEDATDVPVQE 73 (239)
T ss_pred EEEEeEEEEECC--------EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEECCcCCccc
Confidence 789999999963 358999 99999999999999999999999999999999999986 5554
Q ss_pred -eEEEEcCCCCCC-CCCHHHHhccCCcC-------CHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHH
Q 000720 660 -KKAYVPQSSWIQ-TGTIRENILFGKDM-------RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1333)
Q Consensus 660 -~iayv~Q~~~i~-~~Tv~enI~~g~~~-------~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQk 726 (1333)
.++|++|+|.++ ..|++||+.++... +.. +.++.++..++. ...+.++.+||||||
T Consensus 74 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~ 142 (239)
T cd03296 74 RNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLD-----------WLADRYPAQLSGGQR 142 (239)
T ss_pred cceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCCh-----------hhhhcChhhCCHHHH
Confidence 479999999776 46999999886432 111 112223333221 223466789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChH
Q 000720 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYE 804 (1333)
Q Consensus 727 qRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~ 804 (1333)
||++||||++.+|+++||||||++||+++.+.+.+.+.+...+ ++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 143 qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 222 (239)
T cd03296 143 QRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPD 222 (239)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHH
Confidence 9999999999999999999999999999988777644333333 7899999999998754 9999999999999999998
Q ss_pred HHHh
Q 000720 805 DLIA 808 (1333)
Q Consensus 805 ~l~~ 808 (1333)
++.+
T Consensus 223 ~~~~ 226 (239)
T cd03296 223 EVYD 226 (239)
T ss_pred HHhc
Confidence 8765
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=348.13 Aligned_cols=203 Identities=27% Similarity=0.357 Sum_probs=167.2
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--------
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g-------- 659 (1333)
..++++|++++|.. ...+++ ||++++||+++|+|||||||||||++|+|+.+|++|++ .++|
T Consensus 13 ~~L~l~~l~~~~~~--------~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I-~~~g~~i~~~~~ 83 (375)
T PRK09452 13 PLVELRGISKSFDG--------KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRI-MLDGQDITHVPA 83 (375)
T ss_pred ceEEEEEEEEEECC--------eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE-EECCEECCCCCH
Confidence 35899999999963 257899 99999999999999999999999999999999999986 6665
Q ss_pred ---eEEEEcCCCCCC-CCCHHHHhccCCcC---CH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHH
Q 000720 660 ---KKAYVPQSSWIQ-TGTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728 (1333)
Q Consensus 660 ---~iayv~Q~~~i~-~~Tv~enI~~g~~~---~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqR 728 (1333)
.++|++|++.++ ..||+|||.|+... .+ ++.+++++..++. ....+++.+||||||||
T Consensus 84 ~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~p~~LSgGq~QR 152 (375)
T PRK09452 84 ENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLE-----------EFAQRKPHQLSGGQQQR 152 (375)
T ss_pred HHCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCc-----------hhhhCChhhCCHHHHHH
Confidence 379999998776 56999999987532 11 1223333333332 22346778999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhh-cCCEEEEEeCCeEEEccChHHH
Q 000720 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDL 806 (1333)
Q Consensus 729 v~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~~~~l 806 (1333)
|+|||||+.+|+++|||||||+||++.++.+.+.+.+... .+.|+|+||||.+++. .||+|++|++|+|++.|+++++
T Consensus 153 VaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i 232 (375)
T PRK09452 153 VAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREI 232 (375)
T ss_pred HHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999998887765444333 3799999999999864 5999999999999999999999
Q ss_pred Hhhcc
Q 000720 807 IADQN 811 (1333)
Q Consensus 807 ~~~~~ 811 (1333)
..++.
T Consensus 233 ~~~p~ 237 (375)
T PRK09452 233 YEEPK 237 (375)
T ss_pred HhCcc
Confidence 87544
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=340.18 Aligned_cols=206 Identities=25% Similarity=0.356 Sum_probs=165.7
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|++++|+.... ...+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 2 ~l~~~~l~~~y~~~~~---~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~ 77 (287)
T PRK13637 2 SIKIENLTHIYMEGTP---FEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKI-IIDGVDITDKKVK 77 (287)
T ss_pred EEEEEEEEEECCCCCc---cccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEE-EECCEECCCcCcc
Confidence 3789999999974300 11468999 99999999999999999999999999999999999986 5543
Q ss_pred ------eEEEEcCCC--CCCCCCHHHHhccCCc---CCHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChH
Q 000720 660 ------KKAYVPQSS--WIQTGTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1333)
Q Consensus 660 ------~iayv~Q~~--~i~~~Tv~enI~~g~~---~~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGG 724 (1333)
++||+||+| .+++.|++||+.|+.. .+.. +.+++++.+++. +.+..++++.+||||
T Consensus 78 ~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~---------~~~~~~~~~~~LSgG 148 (287)
T PRK13637 78 LSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLD---------YEDYKDKSPFELSGG 148 (287)
T ss_pred HHHHhhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCC---------chhhccCCcccCCHH
Confidence 479999998 4678899999998642 2221 223334444432 012345678899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhh-cCCEEEEEeCCeEEEccC
Q 000720 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGK 802 (1333)
Q Consensus 725 QkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~ 802 (1333)
||||++|||||+.+|+++||||||++||+.++.++.+.+.+...+ ++|||++|||++++. .||+|++|++|++++.|+
T Consensus 149 q~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~ 228 (287)
T PRK13637 149 QKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGT 228 (287)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 999999999999999999999999999999988887644333333 799999999999875 599999999999999999
Q ss_pred hHHHHh
Q 000720 803 YEDLIA 808 (1333)
Q Consensus 803 ~~~l~~ 808 (1333)
++++.+
T Consensus 229 ~~~~~~ 234 (287)
T PRK13637 229 PREVFK 234 (287)
T ss_pred HHHHHh
Confidence 998865
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=340.54 Aligned_cols=204 Identities=25% Similarity=0.364 Sum_probs=165.8
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++++|+.... ...++|+| ||+|++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 3 l~~~~l~~~y~~~~~---~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~i~~~~~~~ 78 (290)
T PRK13634 3 ITFQKVEHRYQYKTP---FERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTV-TIGERVITAGKKNK 78 (290)
T ss_pred EEEEEEEEEECCCCc---ccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEE-EECCEECccccccc
Confidence 789999999964300 11468999 99999999999999999999999999999999999986 5554
Q ss_pred -------eEEEEcCCC--CCCCCCHHHHhccCCc---CCH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCCh
Q 000720 660 -------KKAYVPQSS--WIQTGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1333)
Q Consensus 660 -------~iayv~Q~~--~i~~~Tv~enI~~g~~---~~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSG 723 (1333)
+++||+|+| .+++.||+|||.|+.. .+. ++.+++++.+++..++ .+.++.+|||
T Consensus 79 ~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~~~~LSg 148 (290)
T PRK13634 79 KLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEEL----------LARSPFELSG 148 (290)
T ss_pred hHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhh----------hhCCcccCCH
Confidence 379999997 5777899999998642 121 2334444555443221 2356789999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhh-cCCEEEEEeCCeEEEcc
Q 000720 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSG 801 (1333)
Q Consensus 724 GQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g 801 (1333)
|||||++|||||+.+|+++||||||++||+.+...+.+.+.....+ |.|||++|||++.+. .||+|++|++|++++.|
T Consensus 149 Gq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g 228 (290)
T PRK13634 149 GQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQG 228 (290)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999988887654333333 799999999999975 59999999999999999
Q ss_pred ChHHHHh
Q 000720 802 KYEDLIA 808 (1333)
Q Consensus 802 ~~~~l~~ 808 (1333)
+++++.+
T Consensus 229 ~~~~~~~ 235 (290)
T PRK13634 229 TPREIFA 235 (290)
T ss_pred CHHHHhc
Confidence 9998865
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=345.92 Aligned_cols=203 Identities=33% Similarity=0.434 Sum_probs=166.3
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|++++|+. ...+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 2 ~L~i~~l~~~~~~--------~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I-~i~g~~i~~~~~~ 72 (353)
T PRK10851 2 SIEIANIKKSFGR--------TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHI-RFHGTDVSRLHAR 72 (353)
T ss_pred EEEEEEEEEEeCC--------eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEECCCCCHH
Confidence 3789999999963 357999 99999999999999999999999999999999999986 6654
Q ss_pred --eEEEEcCCCCCCC-CCHHHHhccCCcC-------CH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHH
Q 000720 660 --KKAYVPQSSWIQT-GTIRENILFGKDM-------RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1333)
Q Consensus 660 --~iayv~Q~~~i~~-~Tv~enI~~g~~~-------~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQ 725 (1333)
+++|++|++.++. .|++||+.|+... +. ++.++.++..++. ...++++.+|||||
T Consensus 73 ~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-----------~~~~~~~~~LSgGq 141 (353)
T PRK10851 73 DRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLA-----------HLADRYPAQLSGGQ 141 (353)
T ss_pred HCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCc-----------hhhhCChhhCCHHH
Confidence 4899999998765 6999999987532 11 1222233333332 22346788999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhhc-CCEEEEEeCCeEEEccCh
Q 000720 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKY 803 (1333)
Q Consensus 726 kqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~ 803 (1333)
||||+|||||+.+|+++||||||++||+..++++.+.+.+...+ +.|+|+||||++++.. ||+|++|++|++++.|++
T Consensus 142 ~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~ 221 (353)
T PRK10851 142 KQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTP 221 (353)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 99999999999999999999999999999988887654443333 7899999999998754 999999999999999999
Q ss_pred HHHHhhcch
Q 000720 804 EDLIADQNS 812 (1333)
Q Consensus 804 ~~l~~~~~~ 812 (1333)
+++..++..
T Consensus 222 ~~i~~~p~~ 230 (353)
T PRK10851 222 DQVWREPAT 230 (353)
T ss_pred HHHHhCccc
Confidence 999874433
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=348.88 Aligned_cols=202 Identities=26% Similarity=0.356 Sum_probs=166.3
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|++++|+. ...+++ ||++++||+++|+|||||||||||++|+|+++|++|++ .++|
T Consensus 3 ~l~i~~l~~~~~~--------~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I-~~~g~~i~~~~~~ 73 (369)
T PRK11000 3 SVTLRNVTKAYGD--------VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDL-FIGEKRMNDVPPA 73 (369)
T ss_pred EEEEEEEEEEeCC--------eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE-EECCEECCCCCHh
Confidence 4889999999963 257999 99999999999999999999999999999999999986 6654
Q ss_pred --eEEEEcCCCCCC-CCCHHHHhccCCcC---CH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHH
Q 000720 660 --KKAYVPQSSWIQ-TGTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1333)
Q Consensus 660 --~iayv~Q~~~i~-~~Tv~enI~~g~~~---~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv 729 (1333)
.++|++|++.++ ..||+||+.|+... .. ++.+++++.+++. ...++++.+|||||||||
T Consensus 74 ~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~-----------~~~~~~~~~LSgGq~QRv 142 (369)
T PRK11000 74 ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLA-----------HLLDRKPKALSGGQRQRV 142 (369)
T ss_pred HCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCCh-----------hhhcCChhhCCHHHHHHH
Confidence 389999998876 46999999987432 11 1233334444332 223467789999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhh-cCCEEEEEeCCeEEEccChHHHH
Q 000720 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLI 807 (1333)
Q Consensus 730 ~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~~~~l~ 807 (1333)
+|||||+.+|+++||||||++||+..++.+.+.+.+...+ +.|+|+||||++++. .||+|++|++|++++.|+++++.
T Consensus 143 aLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~ 222 (369)
T PRK11000 143 AIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELY 222 (369)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999988887654443333 789999999999875 59999999999999999999997
Q ss_pred hhcc
Q 000720 808 ADQN 811 (1333)
Q Consensus 808 ~~~~ 811 (1333)
..+.
T Consensus 223 ~~p~ 226 (369)
T PRK11000 223 HYPA 226 (369)
T ss_pred hCcc
Confidence 6443
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=337.76 Aligned_cols=202 Identities=28% Similarity=0.390 Sum_probs=165.9
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|++++|+.. ...+.|+| ||+|++||+++|+||||||||||+++|+|+++|.+|++ .++|
T Consensus 4 ~l~~~~l~~~~~~~-----~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~i~~~~~~ 77 (279)
T PRK13650 4 IIEVKNLTFKYKED-----QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI-IIDGDLLTEENVW 77 (279)
T ss_pred eEEEEeEEEEcCCC-----CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE-EECCEECCcCcHH
Confidence 48899999999743 22458999 99999999999999999999999999999999999986 5655
Q ss_pred ----eEEEEcCCCC--CCCCCHHHHhccCCc---CCH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHH
Q 000720 660 ----KKAYVPQSSW--IQTGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1333)
Q Consensus 660 ----~iayv~Q~~~--i~~~Tv~enI~~g~~---~~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQk 726 (1333)
+++|++|+|. ++..||+|||.|+.. .+. ++.+++++..++.. ..++.+.+||||||
T Consensus 78 ~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-----------~~~~~~~~LSgGq~ 146 (279)
T PRK13650 78 DIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQD-----------FKEREPARLSGGQK 146 (279)
T ss_pred HHHhhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHh-----------HhhCCcccCCHHHH
Confidence 3699999984 567899999998742 122 22333444444432 23456789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhhcCCEEEEEeCCeEEEccChHH
Q 000720 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYED 805 (1333)
Q Consensus 727 qRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~~~ 805 (1333)
||++||||++.+|+++||||||++||+.+.+.+.+.+.+...+ |+|+|++||+++.+..||+|++|++|+++..|++++
T Consensus 147 qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~ 226 (279)
T PRK13650 147 QRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRE 226 (279)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999888777644333333 899999999999887799999999999999999988
Q ss_pred HHh
Q 000720 806 LIA 808 (1333)
Q Consensus 806 l~~ 808 (1333)
+..
T Consensus 227 ~~~ 229 (279)
T PRK13650 227 LFS 229 (279)
T ss_pred HHc
Confidence 865
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=301.05 Aligned_cols=192 Identities=29% Similarity=0.377 Sum_probs=163.5
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
|+|+|++..|+.. .+.|+| ||+|++||++-|+||+||||||||++|.++.+|++|++ .++|
T Consensus 2 I~f~~V~k~Y~~g-------~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i-~~~~~dl~~l~~~~ 73 (223)
T COG2884 2 IRFENVSKAYPGG-------REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKI-LVNGHDLSRLKGRE 73 (223)
T ss_pred eeehhhhhhcCCC-------chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceE-EECCeecccccccc
Confidence 7899999999864 568999 99999999999999999999999999999999999986 5544
Q ss_pred ------eEEEEcCCCC-CCCCCHHHHhccCCcC---C----HHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHH
Q 000720 660 ------KKAYVPQSSW-IQTGTIRENILFGKDM---R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1333)
Q Consensus 660 ------~iayv~Q~~~-i~~~Tv~enI~~g~~~---~----~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQ 725 (1333)
+||+|+|+.- ++..||.||+.|.... . +++..++++..+|.+....+ +.+|||||
T Consensus 74 iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~l-----------P~~LSGGE 142 (223)
T COG2884 74 IPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARAL-----------PSQLSGGE 142 (223)
T ss_pred cchhhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcC-----------ccccCchH
Confidence 5899999975 5778999999996432 1 23445566666776655544 45899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEcc
Q 000720 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1333)
Q Consensus 726 kqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g 801 (1333)
||||+||||+..+|+++|-||||.+|||..+.++++.+.+-...|.||+++|||.+.+.. --+++.+++|+++...
T Consensus 143 QQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 143 QQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred HHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 999999999999999999999999999999999987544445579999999999999876 6899999999998654
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=339.20 Aligned_cols=205 Identities=22% Similarity=0.334 Sum_probs=164.6
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.|+++|++++|+.... ...+.+++ ||+|++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 2 ~i~~~~l~~~y~~~~~---~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i-~~~g~~~~~~~~~ 77 (305)
T PRK13651 2 QIKVKNIVKIFNKKLP---TELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTI-EWIFKDEKNKKKT 77 (305)
T ss_pred EEEEEEEEEEECCCCC---ccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEE-EEeceeccccccc
Confidence 3789999999975300 11358999 99999999999999999999999999999999999986 4421
Q ss_pred ----------------------------eEEEEcCCC--CCCCCCHHHHhccCCc---CCH----HHHHHHHHHcccchH
Q 000720 660 ----------------------------KKAYVPQSS--WIQTGTIRENILFGKD---MRQ----SFYEEVLEGCALNQD 702 (1333)
Q Consensus 660 ----------------------------~iayv~Q~~--~i~~~Tv~enI~~g~~---~~~----~~~~~v~~~~~l~~d 702 (1333)
.+||++|+| .++..||+|||.|+.. .++ ++..++++.+++..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~ 157 (305)
T PRK13651 78 KEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDES 157 (305)
T ss_pred ccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChh
Confidence 369999986 4677899999998742 222 122333444443211
Q ss_pred HHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhh
Q 000720 703 IEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEF 782 (1333)
Q Consensus 703 ~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~ 782 (1333)
..++++.+||||||||++|||||+.+|+++||||||++||+...+.+.+.+.+...+|+|||++|||+++
T Consensus 158 ----------~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~ 227 (305)
T PRK13651 158 ----------YLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDN 227 (305)
T ss_pred ----------hhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHH
Confidence 2346788999999999999999999999999999999999999887776543333458999999999998
Q ss_pred h-hcCCEEEEEeCCeEEEccChHHHHh
Q 000720 783 L-DAADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 783 l-~~aD~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
+ +.||+|++|++|++++.|+++++..
T Consensus 228 ~~~~adrv~vl~~G~i~~~g~~~~~~~ 254 (305)
T PRK13651 228 VLEWTKRTIFFKDGKIIKDGDTYDILS 254 (305)
T ss_pred HHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 7 4599999999999999999999875
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=340.35 Aligned_cols=200 Identities=27% Similarity=0.399 Sum_probs=163.9
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--------
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g-------- 659 (1333)
..++++|++++|++ ...+++ ||+|++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 6 ~~i~i~~l~k~~~~--------~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v-~i~G~~~~~~~~ 76 (306)
T PRK13537 6 APIDFRNVEKRYGD--------KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSI-SLCGEPVPSRAR 76 (306)
T ss_pred ceEEEEeEEEEECC--------eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEE-EECCEecccchH
Confidence 46999999999963 358999 99999999999999999999999999999999999986 6654
Q ss_pred ----eEEEEcCCCCCC-CCCHHHHhccCCcC---CHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHH
Q 000720 660 ----KKAYVPQSSWIQ-TGTIRENILFGKDM---RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (1333)
Q Consensus 660 ----~iayv~Q~~~i~-~~Tv~enI~~g~~~---~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkq 727 (1333)
++||+||++.++ +.|++||+.+.... +.. +.+++++.+++. ...+++..+|||||||
T Consensus 77 ~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~q 145 (306)
T PRK13537 77 HARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLE-----------NKADAKVGELSGGMKR 145 (306)
T ss_pred HHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-----------hHhcCchhhCCHHHHH
Confidence 489999998765 57999999863221 111 122333333332 1223566799999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChHHH
Q 000720 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDL 806 (1333)
Q Consensus 728 Rv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~~l 806 (1333)
|++||||++++|++++|||||+|||+..++.+.+.+.+...+|+|||++||++++++. ||+|++|++|++++.|+++++
T Consensus 146 rl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l 225 (306)
T PRK13537 146 RLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHAL 225 (306)
T ss_pred HHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999888876543333458999999999999865 999999999999999999998
Q ss_pred Hh
Q 000720 807 IA 808 (1333)
Q Consensus 807 ~~ 808 (1333)
.+
T Consensus 226 ~~ 227 (306)
T PRK13537 226 IE 227 (306)
T ss_pred Hh
Confidence 65
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=330.01 Aligned_cols=198 Identities=22% Similarity=0.333 Sum_probs=160.7
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+++|.+|++ .++|
T Consensus 1 l~~~~l~~~~~~--------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 71 (236)
T cd03219 1 LEVRGLTKRFGG--------LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSV-LFDGEDITGLPPHE 71 (236)
T ss_pred CeeeeeEEEECC--------EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceE-EECCEECCCCCHHH
Confidence 467899999963 358999 99999999999999999999999999999999999986 5544
Q ss_pred ----eEEEEcCCCCCCC-CCHHHHhccCCcCC-------------HH----HHHHHHHHcccchHHHhhcCCCccccCCC
Q 000720 660 ----KKAYVPQSSWIQT-GTIRENILFGKDMR-------------QS----FYEEVLEGCALNQDIEMWADGDLSVVGER 717 (1333)
Q Consensus 660 ----~iayv~Q~~~i~~-~Tv~enI~~g~~~~-------------~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~ 717 (1333)
.++|++|++.++. .|++||+.++.... .. +..+.++.. |.....+.+
T Consensus 72 ~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~ 140 (236)
T cd03219 72 IARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERV-----------GLADLADRP 140 (236)
T ss_pred HHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHc-----------CccchhhCC
Confidence 3799999987765 59999998764211 11 111122222 222334577
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCe
Q 000720 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGK 796 (1333)
Q Consensus 718 g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~ 796 (1333)
+.+||||||||++||||++.+|+++||||||++||+.+.+.+.+.+.+...+++|+|++||+++.+.. ||++++|++|+
T Consensus 141 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~ 220 (236)
T cd03219 141 AGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGR 220 (236)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCE
Confidence 88999999999999999999999999999999999999888877544433468999999999999865 99999999999
Q ss_pred EEEccChHHHHh
Q 000720 797 IEQSGKYEDLIA 808 (1333)
Q Consensus 797 i~~~g~~~~l~~ 808 (1333)
+++.|+++++..
T Consensus 221 i~~~~~~~~~~~ 232 (236)
T cd03219 221 VIAEGTPDEVRN 232 (236)
T ss_pred EEeecCHHHhcc
Confidence 999999888754
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=324.27 Aligned_cols=191 Identities=31% Similarity=0.404 Sum_probs=154.7
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++++|+. .+++++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 1 l~~~~l~~~~~~--------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i-~~~g~~~~~~~~~~ 71 (213)
T cd03259 1 LELKGLSKTYGS--------VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEI-LIDGRDVTGVPPER 71 (213)
T ss_pred CeeeeeEEEeCC--------eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEE-EECCEEcCcCchhh
Confidence 468899999963 358999 99999999999999999999999999999999999986 5554
Q ss_pred -eEEEEcCCCCCC-CCCHHHHhccCCcC---CHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHH
Q 000720 660 -KKAYVPQSSWIQ-TGTIRENILFGKDM---RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1333)
Q Consensus 660 -~iayv~Q~~~i~-~~Tv~enI~~g~~~---~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~ 730 (1333)
.++|+||++.++ +.|++||+.++... ... +.++.++.+++. ...++.+.+||||||||++
T Consensus 72 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgG~~qrl~ 140 (213)
T cd03259 72 RNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLE-----------GLLNRYPHELSGGQQQRVA 140 (213)
T ss_pred ccEEEEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCh-----------hhhhcChhhCCHHHHHHHH
Confidence 479999998765 57999999875321 111 222333333332 2234567899999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhhc-CCEEEEEeCCeEEEcc
Q 000720 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1333)
Q Consensus 731 LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g 801 (1333)
||||++.+|+++||||||++||+.+.+.+.+.+.+... .++|||++||+++++.. ||+|++|++|++++.|
T Consensus 141 la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 141 LARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999998888765443333 38999999999998755 9999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-35 Score=326.64 Aligned_cols=200 Identities=27% Similarity=0.369 Sum_probs=164.8
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 3 ~l~~~~l~~~~~~--------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~i~~~~~~ 73 (241)
T PRK14250 3 EIEFKEVSYSSFG--------KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSI-LIDGVDIKTIDVI 73 (241)
T ss_pred eEEEEeEEEEeCC--------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEEhhhcChH
Confidence 4789999999853 358999 99999999999999999999999999999999999986 5554
Q ss_pred ----eEEEEcCCCCCCCCCHHHHhccCCcCC---HHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHH
Q 000720 660 ----KKAYVPQSSWIQTGTIRENILFGKDMR---QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732 (1333)
Q Consensus 660 ----~iayv~Q~~~i~~~Tv~enI~~g~~~~---~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LA 732 (1333)
.++|++|++.++..|++||+.++.... ..+..+.++.+++..+ ..++.+.+||||||||++||
T Consensus 74 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LS~G~~qrl~la 143 (241)
T PRK14250 74 DLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKE----------YATRDVKNLSGGEAQRVSIA 143 (241)
T ss_pred HhhhcEEEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHH----------HhhCCcccCCHHHHHHHHHH
Confidence 379999999888889999998764321 2233344444444321 12356789999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChHHHHh
Q 000720 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 733 RAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
||++++|+++||||||++||+.+.+.+.+.+..... .++|+|++||+++++.. ||+|++|++|++++.|+++++..
T Consensus 144 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (241)
T PRK14250 144 RTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFT 221 (241)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhc
Confidence 999999999999999999999988877664433333 38999999999999765 99999999999999999998875
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=335.50 Aligned_cols=198 Identities=28% Similarity=0.394 Sum_probs=163.3
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|++++|+.. .+.++| ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 4 ~l~~~~l~~~~~~~-------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~ 75 (274)
T PRK13647 4 IIEVEDLHFRYKDG-------TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRV-KVMGREVNAENEK 75 (274)
T ss_pred eEEEEEEEEEeCCC-------CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEE-EECCEECCCCCHH
Confidence 48899999999632 358999 99999999999999999999999999999999999986 6655
Q ss_pred ----eEEEEcCCC--CCCCCCHHHHhccCCc---CCH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHH
Q 000720 660 ----KKAYVPQSS--WIQTGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1333)
Q Consensus 660 ----~iayv~Q~~--~i~~~Tv~enI~~g~~---~~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQk 726 (1333)
.++|++|+| .++..|++||+.|+.. .+. ++.+++++.+++.+ .....+.+||||||
T Consensus 76 ~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-----------~~~~~~~~LSgG~~ 144 (274)
T PRK13647 76 WVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWD-----------FRDKPPYHLSYGQK 144 (274)
T ss_pred HHHhhEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHH-----------HhcCChhhCCHHHH
Confidence 379999998 5678899999998642 121 22333444444421 23356789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeEEEccChHH
Q 000720 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYED 805 (1333)
Q Consensus 727 qRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~~~~ 805 (1333)
||++||||++.+|+++||||||++||+.+..++.+.+.+...+|+|+|++||+++++. .||+|++|++|++++.|++++
T Consensus 145 qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 224 (274)
T PRK13647 145 KRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSL 224 (274)
T ss_pred HHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999988887654433345899999999999985 599999999999999999875
Q ss_pred H
Q 000720 806 L 806 (1333)
Q Consensus 806 l 806 (1333)
+
T Consensus 225 ~ 225 (274)
T PRK13647 225 L 225 (274)
T ss_pred h
Confidence 4
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=327.39 Aligned_cols=194 Identities=28% Similarity=0.409 Sum_probs=156.8
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCC-----cCCCCcEEEECC-----
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEI-----PRISGAAIKVHG----- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~-----~~~~G~~i~~~g----- 659 (1333)
|+++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+. +|.+|++ .++|
T Consensus 1 i~~~~l~~~~~~--------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i-~~~g~~~~~ 71 (227)
T cd03260 1 IELRDLNVYYGD--------KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEV-LLDGKDIYD 71 (227)
T ss_pred CEEEEEEEEcCC--------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEE-EECCEEhhh
Confidence 468999999863 358999 9999999999999999999999999999999 8999986 5544
Q ss_pred ----------eEEEEcCCCCCCCCCHHHHhccCCcCC--------HHHHHHHHHHcccchHHHhhcCCCccccCCC--CC
Q 000720 660 ----------KKAYVPQSSWIQTGTIRENILFGKDMR--------QSFYEEVLEGCALNQDIEMWADGDLSVVGER--GI 719 (1333)
Q Consensus 660 ----------~iayv~Q~~~i~~~Tv~enI~~g~~~~--------~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~--g~ 719 (1333)
.++|++|++.+++.|++||+.++.... .++.+++++.+++.+. ...+ +.
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~~ 140 (227)
T cd03260 72 LDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDE-----------VKDRLHAL 140 (227)
T ss_pred cchHHHHHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChH-----------HhccCCcc
Confidence 379999999877889999998753211 1122233343333221 1233 58
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeEE
Q 000720 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIE 798 (1333)
Q Consensus 720 ~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~ 798 (1333)
+||||||||++||||++.+|+++||||||++||+.+++.+.+.+ +...+++|+|++||+++.+. .||++++|++|+++
T Consensus 141 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~ 219 (227)
T cd03260 141 GLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELI-AELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLV 219 (227)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH-HHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEE
Confidence 99999999999999999999999999999999999988887644 44433389999999999876 59999999999999
Q ss_pred EccChHH
Q 000720 799 QSGKYED 805 (1333)
Q Consensus 799 ~~g~~~~ 805 (1333)
+.|++++
T Consensus 220 ~~g~~~~ 226 (227)
T cd03260 220 EFGPTEQ 226 (227)
T ss_pred EecCccc
Confidence 9988765
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=325.09 Aligned_cols=196 Identities=23% Similarity=0.327 Sum_probs=158.7
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
|+++|++++|+. .+.+++ |+++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 1 i~~~~~~~~~~~--------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~~~~~~~~~ 71 (220)
T cd03265 1 IEVENLVKKYGD--------FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRA-TVAGHDVVREPREV 71 (220)
T ss_pred CEEEEEEEEECC--------EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEecCcChHHH
Confidence 468999999853 358999 99999999999999999999999999999999999986 5554
Q ss_pred --eEEEEcCCCCCCC-CCHHHHhccCCc---CCH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHH
Q 000720 660 --KKAYVPQSSWIQT-GTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1333)
Q Consensus 660 --~iayv~Q~~~i~~-~Tv~enI~~g~~---~~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv 729 (1333)
.++|++|++.++. .|++||+.++.. .+. ++.++.++.+++.+ ....++.+||||||||+
T Consensus 72 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qr~ 140 (220)
T cd03265 72 RRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLE-----------AADRLVKTYSGGMRRRL 140 (220)
T ss_pred hhcEEEecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-----------HhhCChhhCCHHHHHHH
Confidence 4799999987654 699999987432 111 12233344443321 22356789999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChHHH
Q 000720 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDL 806 (1333)
Q Consensus 730 ~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~~l 806 (1333)
+||||++.+|+++||||||++||+++.+.+.+.+.+...+ ++|+|++||+++++.. ||++++|++|++++.|+++++
T Consensus 141 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 141 EIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 9999999999999999999999999988877654443444 7899999999999865 999999999999998887654
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-35 Score=322.93 Aligned_cols=197 Identities=40% Similarity=0.738 Sum_probs=171.6
Q ss_pred EEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEEC------------
Q 000720 592 DIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH------------ 658 (1333)
Q Consensus 592 ~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~------------ 658 (1333)
.+.|+.|+|+.+ .+++++ ||++++||+++|+||||||||||+++|+|+.+|++|++ .++
T Consensus 2 ~~~~~~~~~~~~-------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~~~~~~~~~~ 73 (218)
T cd03290 2 QVTNGYFSWGSG-------LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKV-HWSNKNESEPSFEAT 73 (218)
T ss_pred eeeeeEEecCCC-------CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeE-EECCccccccccccc
Confidence 567899999754 468999 99999999999999999999999999999999999986 443
Q ss_pred -----CeEEEEcCCCCCCCCCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHH
Q 000720 659 -----GKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733 (1333)
Q Consensus 659 -----g~iayv~Q~~~i~~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LAR 733 (1333)
..++|++|+|.+++.|++||+.++...+.++.+++.+.+++.+.++..|.|+++.++.++.+||||||||++|||
T Consensus 74 ~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~lar 153 (218)
T cd03290 74 RSRNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVAR 153 (218)
T ss_pred chhhcceEEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHH
Confidence 248999999988889999999987655555566778888887777888888888888999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHh-CCCeEEEecCchhhhhcCCEEEEEeCCe
Q 000720 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKQ-CLMGLL-SQKTVLYTTHQLEFLDAADLVLVMKDGK 796 (1333)
Q Consensus 734 Al~~~~~illLDEP~saLD~~~~~~l~~~-~~~~~~-~~~TvIlvtH~~~~l~~aD~i~vl~~G~ 796 (1333)
|++.+|+++||||||++||+.+.+.+.+. +++... +++|+|++||+++.+..||++++|++|+
T Consensus 154 al~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 154 ALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred HHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999999999998887763 454443 4789999999999988899999999884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-35 Score=343.13 Aligned_cols=203 Identities=25% Similarity=0.334 Sum_probs=164.4
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
|+++|++++|+... ...+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 2 i~i~~l~~~y~~~~----~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I-~~~g~~i~~~~~~~ 76 (343)
T PRK11153 2 IELKNISKVFPQGG----RTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRV-LVDGQDLTALSEKE 76 (343)
T ss_pred EEEEeEEEEeCCCC----CceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE-EECCEECCcCCHHH
Confidence 68999999997320 13468999 99999999999999999999999999999999999986 5543
Q ss_pred ------eEEEEcCCCCCCC-CCHHHHhccCCcC---CHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHH
Q 000720 660 ------KKAYVPQSSWIQT-GTIRENILFGKDM---RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1333)
Q Consensus 660 ------~iayv~Q~~~i~~-~Tv~enI~~g~~~---~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQ 725 (1333)
+++|++|++.++. .|++||+.++... ... +..+.++..++. .....++.+|||||
T Consensus 77 ~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~-----------~~~~~~~~~LSgGq 145 (343)
T PRK11153 77 LRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLS-----------DKADRYPAQLSGGQ 145 (343)
T ss_pred HHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-----------hhhhCChhhCCHHH
Confidence 4899999988764 7999999876321 121 122233333222 23346778999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhhc-CCEEEEEeCCeEEEccCh
Q 000720 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKY 803 (1333)
Q Consensus 726 kqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~ 803 (1333)
|||++||||++++|+++||||||++||+.+.+.+.+.+.+... .++|+|++||+++.+.. ||+|++|++|++++.|+.
T Consensus 146 ~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~ 225 (343)
T PRK11153 146 KQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTV 225 (343)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 9999999999999999999999999999998888765443333 37999999999999865 999999999999999999
Q ss_pred HHHHhh
Q 000720 804 EDLIAD 809 (1333)
Q Consensus 804 ~~l~~~ 809 (1333)
+++..+
T Consensus 226 ~~~~~~ 231 (343)
T PRK11153 226 SEVFSH 231 (343)
T ss_pred HHHHhC
Confidence 998763
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=324.87 Aligned_cols=189 Identities=24% Similarity=0.363 Sum_probs=153.0
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++++|+.. ..+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 2 l~~~~l~~~~~~~------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 74 (216)
T TIGR00960 2 IRFEQVSKAYPGG------HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKI-RFNGQDLTRLRGRE 74 (216)
T ss_pred eEEEEEEEEecCC------CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEehhhcChhH
Confidence 6789999999642 2368999 99999999999999999999999999999999999986 5554
Q ss_pred ------eEEEEcCCCCCC-CCCHHHHhccCCc---CC----HHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHH
Q 000720 660 ------KKAYVPQSSWIQ-TGTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1333)
Q Consensus 660 ------~iayv~Q~~~i~-~~Tv~enI~~g~~---~~----~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQ 725 (1333)
+++|++|++.++ ..|++||+.++.. .. .++..+.++.+++.+ ...+.+.+|||||
T Consensus 75 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~ 143 (216)
T TIGR00960 75 IPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEG-----------KAHALPMQLSGGE 143 (216)
T ss_pred HHHHHHhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-----------hhhCChhhCCHHH
Confidence 379999998765 4699999987532 11 122233344443321 2335667999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeE
Q 000720 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKI 797 (1333)
Q Consensus 726 kqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i 797 (1333)
|||++||||++++|+++||||||++||+.+.+.+.+.+.+...+++|+|++|||++++.. ||++++|++|+|
T Consensus 144 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 144 QQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999888876544333458999999999999865 999999999975
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-35 Score=336.00 Aligned_cols=205 Identities=22% Similarity=0.383 Sum_probs=164.1
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|++++|+.... ...++|++ ||+|++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 2 ~l~~~~l~~~y~~~~~---~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i-~~~g~~i~~~~~~ 77 (286)
T PRK13646 2 TIRFDNVSYTYQKGTP---YEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTV-TVDDITITHKTKD 77 (286)
T ss_pred EEEEEEEEEEECCCCc---cccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE-EECCEECcccccc
Confidence 3789999999974300 12468999 99999999999999999999999999999999999986 5544
Q ss_pred --------eEEEEcCCC--CCCCCCHHHHhccCCc---CCHHH----HHHHHHHcccchHHHhhcCCCccccCCCCCCCC
Q 000720 660 --------KKAYVPQSS--WIQTGTIRENILFGKD---MRQSF----YEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1333)
Q Consensus 660 --------~iayv~Q~~--~i~~~Tv~enI~~g~~---~~~~~----~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LS 722 (1333)
++||++|+| .++..|++|||.|+.. .+... .++.++.+++.. ...++.+.+||
T Consensus 78 ~~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~~~~~~~~~LS 147 (286)
T PRK13646 78 KYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSR----------DVMSQSPFQMS 147 (286)
T ss_pred chHHHHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCCcccCC
Confidence 369999997 5677899999998642 22221 122233333221 12346788999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhh-cCCEEEEEeCCeEEEc
Q 000720 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQS 800 (1333)
Q Consensus 723 GGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~ 800 (1333)
||||||++|||||+.+|+++||||||++||+.++..+.+.+.+... .|+|||++||+++.+. .||+|++|++|++++.
T Consensus 148 gGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~ 227 (286)
T PRK13646 148 GGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQ 227 (286)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999998887764433333 4799999999999875 5999999999999999
Q ss_pred cChHHHHh
Q 000720 801 GKYEDLIA 808 (1333)
Q Consensus 801 g~~~~l~~ 808 (1333)
|+++++.+
T Consensus 228 g~~~~~~~ 235 (286)
T PRK13646 228 TSPKELFK 235 (286)
T ss_pred CCHHHHHh
Confidence 99988765
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=324.67 Aligned_cols=197 Identities=32% Similarity=0.430 Sum_probs=157.8
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--------eE
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------KK 661 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------~i 661 (1333)
++++|++++|+... ...+++++ ||++++||+++|+||||||||||+++|+|+.+|++|++ .++| .+
T Consensus 1 l~~~~l~~~~~~~~----~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGG----GAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEV-LVDGEPVTGPGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCC----cceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEECccccCcE
Confidence 46899999996420 11468999 99999999999999999999999999999999999986 6655 58
Q ss_pred EEEcCCCCCCC-CCHHHHhccCCcC---CH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHH
Q 000720 662 AYVPQSSWIQT-GTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733 (1333)
Q Consensus 662 ayv~Q~~~i~~-~Tv~enI~~g~~~---~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LAR 733 (1333)
+|++|++.++. .|++||+.++... .. ++.++.++..++.+ ...+++.+||||||||++|||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~~qrl~la~ 144 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSG-----------FENAYPHQLSGGMRQRVALAR 144 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-----------hhhCCcccCCHHHHHHHHHHH
Confidence 99999987765 7999999875321 11 12233334333321 234567899999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhh-cCCEEEEEe--CCeEEEccCh
Q 000720 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMK--DGKIEQSGKY 803 (1333)
Q Consensus 734 Al~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~-~aD~i~vl~--~G~i~~~g~~ 803 (1333)
|++.+|+++||||||++||+.+.+.+++.+.+... .++|+|++||+++++. .||++++|+ +|++++.++.
T Consensus 145 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 99999999999999999999998888765443333 4789999999999875 599999999 7999987764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-35 Score=344.65 Aligned_cols=205 Identities=25% Similarity=0.346 Sum_probs=167.9
Q ss_pred CccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC-------
Q 000720 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (1333)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g------- 659 (1333)
...++++|++++|+. ...+++ ||++++||+++|+|||||||||||++|+|+.+|++|++ .++|
T Consensus 17 ~~~l~l~~v~~~~~~--------~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I-~i~g~~i~~~~ 87 (377)
T PRK11607 17 TPLLEIRNLTKSFDG--------QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQI-MLDGVDLSHVP 87 (377)
T ss_pred CceEEEEeEEEEECC--------EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE-EECCEECCCCC
Confidence 346999999999953 357899 99999999999999999999999999999999999986 6665
Q ss_pred ----eEEEEcCCCCCCC-CCHHHHhccCCcC---CHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHH
Q 000720 660 ----KKAYVPQSSWIQT-GTIRENILFGKDM---RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (1333)
Q Consensus 660 ----~iayv~Q~~~i~~-~Tv~enI~~g~~~---~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkq 727 (1333)
.+||++|++.++. .||.|||.|+... .+. +..+.++..++. ...+.++.+|||||||
T Consensus 88 ~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~-----------~~~~~~~~~LSgGq~Q 156 (377)
T PRK11607 88 PYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQ-----------EFAKRKPHQLSGGQRQ 156 (377)
T ss_pred HHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-----------hhhcCChhhCCHHHHH
Confidence 3799999998764 6999999987432 211 222333333332 2234677899999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhh-cCCEEEEEeCCeEEEccChHH
Q 000720 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYED 805 (1333)
Q Consensus 728 Rv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~~~~ 805 (1333)
||+|||||+.+|+++|||||||+||+..++.+.+.+.+... .+.|+|+||||.+++. .||+|++|++|++++.|++++
T Consensus 157 RVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~ 236 (377)
T PRK11607 157 RVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEE 236 (377)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHH
Confidence 99999999999999999999999999998887765544333 3789999999999865 599999999999999999999
Q ss_pred HHhhcch
Q 000720 806 LIADQNS 812 (1333)
Q Consensus 806 l~~~~~~ 812 (1333)
+..++..
T Consensus 237 ~~~~p~~ 243 (377)
T PRK11607 237 IYEHPTT 243 (377)
T ss_pred HHhCCcc
Confidence 9875443
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=320.73 Aligned_cols=187 Identities=32% Similarity=0.451 Sum_probs=153.2
Q ss_pred EeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------eE
Q 000720 593 IEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------KK 661 (1333)
Q Consensus 593 i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g----------~i 661 (1333)
++|++++|+.. .+.+++ ||++++||+++|+||||||||||+++|+|+.+|++|++ .++| ++
T Consensus 2 ~~~l~~~~~~~-------~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~~i 73 (205)
T cd03226 2 IENISFSYKKG-------TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSI-LLNGKPIKAKERRKSI 73 (205)
T ss_pred cccEEEEeCCc-------CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE-EECCEEhhhHHhhcce
Confidence 57888888641 358999 99999999999999999999999999999999999986 6655 47
Q ss_pred EEEcCCC--CCCCCCHHHHhccCCcCC---HHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHc
Q 000720 662 AYVPQSS--WIQTGTIRENILFGKDMR---QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY 736 (1333)
Q Consensus 662 ayv~Q~~--~i~~~Tv~enI~~g~~~~---~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~ 736 (1333)
+|++|+| .++..|++||+.++.... ..+.++.++.+++.+ ....++.+||||||||++||||++
T Consensus 74 ~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~laral~ 142 (205)
T cd03226 74 GYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYA-----------LKERHPLSLSGGQKQRLAIAAALL 142 (205)
T ss_pred EEEecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCch-----------hcCCCchhCCHHHHHHHHHHHHHH
Confidence 9999997 456789999998864321 233445555555432 223567799999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEE
Q 000720 737 SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE 798 (1333)
Q Consensus 737 ~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~ 798 (1333)
.+|+++||||||++||+...+.+.+.+.+...+++|+|++||+++.+.. ||++++|++|+++
T Consensus 143 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 143 SGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred hCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999887766443333568999999999999865 9999999999874
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=328.48 Aligned_cols=203 Identities=24% Similarity=0.361 Sum_probs=164.2
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCc-----CCCCcEEEECC---
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG--- 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~-----~~~G~~i~~~g--- 659 (1333)
..++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+.+ |++|++ .++|
T Consensus 5 ~~l~~~~l~~~~~~--------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i-~~~g~~i 75 (253)
T PRK14242 5 PKMEARGLSFFYGD--------FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEI-LLDGENI 75 (253)
T ss_pred cEEEEeeeEEEECC--------eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEE-EECCEEc
Confidence 46999999999963 258999 99999999999999999999999999999864 578875 4433
Q ss_pred ------------eEEEEcCCCCCCCCCHHHHhccCCcC----C----HHHHHHHHHHcccchHHHhhcCCCccccCCCCC
Q 000720 660 ------------KKAYVPQSSWIQTGTIRENILFGKDM----R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1333)
Q Consensus 660 ------------~iayv~Q~~~i~~~Tv~enI~~g~~~----~----~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~ 719 (1333)
.++|++|++.+++.|++||+.++... . .++.++.++.+++.+.+. +..++.+.
T Consensus 76 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~ 148 (253)
T PRK14242 76 YDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK-------DRLHESAL 148 (253)
T ss_pred cccccCHHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcc
Confidence 47999999988778999999875321 1 112233344444432211 23456788
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeEE
Q 000720 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIE 798 (1333)
Q Consensus 720 ~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~ 798 (1333)
+||||||||++||||++.+|+++||||||++||+.+...+.+ .++.+.+++|||++||+++++. .||+|++|++|+++
T Consensus 149 ~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~ 227 (253)
T PRK14242 149 GLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEE-LIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLI 227 (253)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999887766 4455556789999999999985 59999999999999
Q ss_pred EccChHHHHh
Q 000720 799 QSGKYEDLIA 808 (1333)
Q Consensus 799 ~~g~~~~l~~ 808 (1333)
+.|+++++.+
T Consensus 228 ~~g~~~~~~~ 237 (253)
T PRK14242 228 EVGPTEQIFT 237 (253)
T ss_pred EeCCHHHHHc
Confidence 9999988865
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-35 Score=327.56 Aligned_cols=197 Identities=27% Similarity=0.358 Sum_probs=159.2
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++++|+.+ .+++++ ||++++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 2 l~~~~l~~~~~~~-------~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 73 (243)
T TIGR02315 2 LEVENLSKVYPNG-------KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSI-LLEGTDITKLRGKK 73 (243)
T ss_pred eEEEeeeeecCCC-------cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEE-EECCEEhhhCCHHH
Confidence 6789999999622 358999 99999999999999999999999999999999999986 5544
Q ss_pred ------eEEEEcCCCCCC-CCCHHHHhccCCcC------------CH---HHHHHHHHHcccchHHHhhcCCCccccCCC
Q 000720 660 ------KKAYVPQSSWIQ-TGTIRENILFGKDM------------RQ---SFYEEVLEGCALNQDIEMWADGDLSVVGER 717 (1333)
Q Consensus 660 ------~iayv~Q~~~i~-~~Tv~enI~~g~~~------------~~---~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~ 717 (1333)
.++|++|++.++ ..|++||+.++... .+ ++..+.++.+++. ...+.+
T Consensus 74 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~ 142 (243)
T TIGR02315 74 LRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLA-----------DKAYQR 142 (243)
T ss_pred HHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcH-----------hhhcCC
Confidence 379999998765 47999999875321 01 1122223333222 233467
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhh-cCCEEEEEeCC
Q 000720 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDG 795 (1333)
Q Consensus 718 g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~-~aD~i~vl~~G 795 (1333)
+.+||||||||++||||++.+|+++||||||++||+.+.+.+.+.+.+... .++|+|++||+++++. .||++++|++|
T Consensus 143 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G 222 (243)
T TIGR02315 143 ADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAG 222 (243)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECC
Confidence 889999999999999999999999999999999999998877764433333 3789999999999985 59999999999
Q ss_pred eEEEccChHHH
Q 000720 796 KIEQSGKYEDL 806 (1333)
Q Consensus 796 ~i~~~g~~~~l 806 (1333)
++++.|+++++
T Consensus 223 ~i~~~~~~~~~ 233 (243)
T TIGR02315 223 EIVFDGAPSEL 233 (243)
T ss_pred EEEecCCHHHh
Confidence 99999998886
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-35 Score=319.81 Aligned_cols=191 Identities=26% Similarity=0.331 Sum_probs=156.9
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 1 l~~~~l~~~~~~--------~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 71 (208)
T cd03268 1 LKTNDLTKTYGK--------KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEI-TFDGKSYQKNIEAL 71 (208)
T ss_pred CEEEEEEEEECC--------eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEE-EECCCcccchHHHH
Confidence 468999999953 368999 99999999999999999999999999999999999986 6654
Q ss_pred -eEEEEcCCCCCC-CCCHHHHhccCCc---CCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHH
Q 000720 660 -KKAYVPQSSWIQ-TGTIRENILFGKD---MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734 (1333)
Q Consensus 660 -~iayv~Q~~~i~-~~Tv~enI~~g~~---~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARA 734 (1333)
.++|++|++.++ +.|++||+.++.. .++++.++.++..++.+ ...+++.+||||||||++||||
T Consensus 72 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~la~a 140 (208)
T cd03268 72 RRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKD-----------SAKKKVKGFSLGMKQRLGIALA 140 (208)
T ss_pred hhEEEecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHH-----------HHhhhHhhCCHHHHHHHHHHHH
Confidence 479999998765 6799999987532 12333444455444432 2235678999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEcc
Q 000720 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1333)
Q Consensus 735 l~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g 801 (1333)
++.+|+++||||||++||+.+.+.+.+.+.+...+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 141 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 141 LLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred HhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999888876444333458999999999999865 9999999999998764
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-35 Score=327.30 Aligned_cols=198 Identities=27% Similarity=0.370 Sum_probs=159.3
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++++|+.+ .+.+++ ||++++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 1 l~~~~l~~~~~~~-------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 72 (241)
T cd03256 1 IEVENLSKTYPNG-------KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSV-LIDGTDINKLKGKA 72 (241)
T ss_pred CEEeeEEEecCCc-------cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceE-EECCEeccccCHhH
Confidence 4688999999641 358999 99999999999999999999999999999999999986 5543
Q ss_pred ------eEEEEcCCCCCCC-CCHHHHhccCCcC------------CHH---HHHHHHHHcccchHHHhhcCCCccccCCC
Q 000720 660 ------KKAYVPQSSWIQT-GTIRENILFGKDM------------RQS---FYEEVLEGCALNQDIEMWADGDLSVVGER 717 (1333)
Q Consensus 660 ------~iayv~Q~~~i~~-~Tv~enI~~g~~~------------~~~---~~~~v~~~~~l~~d~~~~~~g~~t~ig~~ 717 (1333)
.++|++|++.++. .|++||+.++... ... +..+.++..++ ....+.+
T Consensus 73 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~ 141 (241)
T cd03256 73 LRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGL-----------LDKAYQR 141 (241)
T ss_pred HHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCC-----------hhhhCCC
Confidence 3799999987654 7999999875321 011 11122222222 1234567
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhh-cCCEEEEEeCC
Q 000720 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDG 795 (1333)
Q Consensus 718 g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~-~aD~i~vl~~G 795 (1333)
+.+||||||||++||||++.+|+++||||||++||+.+.+.+.+.+.+... .++|+|++||+++.+. .||++++|++|
T Consensus 142 ~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G 221 (241)
T cd03256 142 ADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDG 221 (241)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 889999999999999999999999999999999999998888765444333 3799999999999987 59999999999
Q ss_pred eEEEccChHHHH
Q 000720 796 KIEQSGKYEDLI 807 (1333)
Q Consensus 796 ~i~~~g~~~~l~ 807 (1333)
++++.|+++++.
T Consensus 222 ~i~~~~~~~~~~ 233 (241)
T cd03256 222 RIVFDGPPAELT 233 (241)
T ss_pred EEEeecCHHHhh
Confidence 999999988863
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=326.61 Aligned_cols=202 Identities=27% Similarity=0.397 Sum_probs=163.7
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCC-----CCcEEEECC----
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI-----SGAAIKVHG---- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~-----~G~~i~~~g---- 659 (1333)
.++++|++++|+.. ..+++ ||++++||+++|+|+||||||||+++|+|+.+|. +|++ .++|
T Consensus 1 ~l~~~~l~~~~~~~--------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i-~~~g~~~~ 71 (247)
T TIGR00972 1 AIEIENLNLFYGEK--------EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKV-LFDGQDIY 71 (247)
T ss_pred CEEEEEEEEEECCe--------eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEE-EECCEEcc
Confidence 37899999999642 57999 9999999999999999999999999999999988 8976 4433
Q ss_pred -----------eEEEEcCCCCCCCCCHHHHhccCCcC----CH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCC
Q 000720 660 -----------KKAYVPQSSWIQTGTIRENILFGKDM----RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1333)
Q Consensus 660 -----------~iayv~Q~~~i~~~Tv~enI~~g~~~----~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~ 720 (1333)
.++|+||++.+++.|++||+.++... .. ++.+++++..++.++++ ...+.++.+
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~ 144 (247)
T TIGR00972 72 DKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALG 144 (247)
T ss_pred ccccchHHHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCccc
Confidence 47999999988779999999875321 11 12223333333332111 234567889
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeEEE
Q 000720 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQ 799 (1333)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~ 799 (1333)
||||||||++||||++.+|+++||||||++||+.+...+.+ +++...+++|+|++||+++.+. .||++++|++|++++
T Consensus 145 LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 223 (247)
T TIGR00972 145 LSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEE-LIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVE 223 (247)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999887765 4555545689999999999875 499999999999999
Q ss_pred ccChHHHHh
Q 000720 800 SGKYEDLIA 808 (1333)
Q Consensus 800 ~g~~~~l~~ 808 (1333)
.|+++++..
T Consensus 224 ~~~~~~~~~ 232 (247)
T TIGR00972 224 YGPTEQIFT 232 (247)
T ss_pred eCCHHHHHh
Confidence 999988865
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=327.18 Aligned_cols=203 Identities=26% Similarity=0.378 Sum_probs=164.1
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcC-----CCCcEEEECC---
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG--- 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~-----~~G~~i~~~g--- 659 (1333)
..++++|++++|+. .+.+++ ||++++||+++|+|+||||||||+++|+|+++| ++|++ .++|
T Consensus 6 ~~l~~~~l~~~~~~--------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i-~~~g~~i 76 (254)
T PRK14273 6 AIIETENLNLFYTD--------FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNV-IYEGKNI 76 (254)
T ss_pred ceEEEeeeEEEeCC--------ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEE-EECCEec
Confidence 36999999999963 258999 999999999999999999999999999999987 47875 4433
Q ss_pred ------------eEEEEcCCCCCCCCCHHHHhccCCcC----CHH----HHHHHHHHcccchHHHhhcCCCccccCCCCC
Q 000720 660 ------------KKAYVPQSSWIQTGTIRENILFGKDM----RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1333)
Q Consensus 660 ------------~iayv~Q~~~i~~~Tv~enI~~g~~~----~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~ 719 (1333)
.++|++|++.+++.|++|||.++... ... +..+.++.+++.+.+. ...+.++.
T Consensus 77 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~ 149 (254)
T PRK14273 77 YSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVK-------DKLNTNAL 149 (254)
T ss_pred ccccccHHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhH-------HHHhCCcc
Confidence 37999999988889999999886421 111 1222333333321111 12346788
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEE
Q 000720 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE 798 (1333)
Q Consensus 720 ~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~ 798 (1333)
+||||||||++||||++.+|+++||||||++||+.+.+.+.+. ++.+.+++|+|++||+++++.. ||++++|++|+++
T Consensus 150 ~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~ 228 (254)
T PRK14273 150 SLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEEL-IINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIE 228 (254)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHH-HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999998887764 4445567899999999999754 9999999999999
Q ss_pred EccChHHHHh
Q 000720 799 QSGKYEDLIA 808 (1333)
Q Consensus 799 ~~g~~~~l~~ 808 (1333)
+.|+++++.+
T Consensus 229 ~~g~~~~~~~ 238 (254)
T PRK14273 229 EESSTDELFF 238 (254)
T ss_pred EeCCHHHHHh
Confidence 9999998875
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-32 Score=300.90 Aligned_cols=502 Identities=15% Similarity=0.159 Sum_probs=319.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 266 PQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGL--VLASVFLFAKTVESLTQRQWYFGAN 343 (1333)
Q Consensus 266 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~--~l~~~l~~~~~~~~l~~~~~~~~~~ 343 (1333)
.-.++|.+++.++....+.+...+ ++-.++-.+-+++-+.......-.-+ .+...++++.. +++.--.+-.+
T Consensus 4 ll~llr~nr~~~i~~~a~s~a~g~---~g~~lLa~in~al~e~~~~~~~~l~~f~~llllf~~ss~---is~lg~t~~gq 77 (546)
T COG4615 4 LLLLLRQNRWPFISVMALSLASGA---LGIGLLAFINQALIETADTSLLVLPEFLGLLLLFMVSSL---ISQLGLTTLGQ 77 (546)
T ss_pred HHHHhcccccHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhcccceeeHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 346778888888776665554443 34445544445553332210100011 11112222222 22222333344
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCC-ChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 000720 344 RIGIRVRSALTVLIYKRSMAIKFAGP-SSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAAL 422 (1333)
Q Consensus 344 ~~~~rir~~l~~~iy~K~L~ls~~~~-~~G~i~nlms~D~~~i~~~~~~~~~~w~~plqi~~~l~lL~~~lG~~a~l~gl 422 (1333)
..-.++|..++..|..--+.. -++ +++.++.-++.|+..|.-.+..+.++--+.+-+..+...|++.-+ ......+
T Consensus 78 ~~I~klr~~~~~kil~tpler--ier~~~~rlla~L~~Dvr~ISf~~s~lp~~~qa~il~l~s~aYLayLSp-~mf~l~v 154 (546)
T COG4615 78 HFIYKLRSEFIKKILDTPLER--IERLGSARLLAGLTSDVRNISFAFSRLPELVQAIILTLGSAAYLAYLSP-KMFLLTV 154 (546)
T ss_pred HHHHHHHHHHHHHHhcCHHHH--HHHhcccchhhhhcccccceeehHhhhHHHHHHHHHHHHHHHHHHHhhH-HHHHHHH
Confidence 444566665555444322211 112 778899999999999987777777666555555556666665555 5566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchH--HHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 000720 423 FSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWE--QEFLKKL-LRLREIERDSLKKYLYTCS 499 (1333)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE--~~f~~~i-~~~R~~E~~~l~~~~~~~a 499 (1333)
+.+++.+..+....++..++..+..+..|+=.+..+.++.|-|-+|+..=. ..+.+.+ .+.++.|-. ..+...
T Consensus 155 V~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~~r~~----~~~~n~ 230 (546)
T COG4615 155 VWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRHH----IIRANT 230 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchHHHHhh----hhhhhH
Confidence 677777777777777777777777888899999999999999999987632 2233332 223333321 111111
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 000720 500 AI-AFLFWASPTLVSVITFGVCILLKTPLT-SGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKK 577 (1333)
Q Consensus 500 ~~-~~~~~~~p~lv~~~tF~~~~~~~~~Lt-~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~ 577 (1333)
+. ....|....+.+++....|+...-... ...+.|....+-.++.|+.+....++++.+|.++++||.++=..|+..+
T Consensus 231 f~~la~~~~ni~l~~lIGlvf~lal~~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a~ 310 (546)
T COG4615 231 FHLLAVNWSNIMLLGLIGLVFWLALSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKAD 310 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCcccc
Confidence 11 223444444444433332222221122 2244444455566899999999999999999999999999877655332
Q ss_pred CCCCCCCCCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEE
Q 000720 578 PITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK 656 (1333)
Q Consensus 578 ~~~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~ 656 (1333)
-....+.+ +-..++++|+.|+|+++ .+.+.. |++|++||+|-|+|.||||||||++.++|+++|++|++ .
T Consensus 311 ~~~~q~~p-~~~~lelrnvrfay~~~-------~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I-~ 381 (546)
T COG4615 311 FPRPQAFP-DWKTLELRNVRFAYQDN-------AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEI-L 381 (546)
T ss_pred CCCCCcCC-cccceeeeeeeeccCcc-------cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCce-e
Confidence 21111111 23469999999999876 366777 99999999999999999999999999999999999997 8
Q ss_pred ECCeE-------------EEEcCCCCCCCCCHHHHhccCCc-CCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCC
Q 000720 657 VHGKK-------------AYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1333)
Q Consensus 657 ~~g~i-------------ayv~Q~~~i~~~Tv~enI~~g~~-~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LS 722 (1333)
++|+. +-|+-|-|+|+.++ -+.. -.++..+.-++...+.+.. .+.+|.. ....||
T Consensus 382 ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll-----~~e~~as~q~i~~~LqrLel~~kt-sl~d~~f-----s~~kLS 450 (546)
T COG4615 382 LDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL-----GPEGKASPQLIEKWLQRLELAHKT-SLNDGRF-----SNLKLS 450 (546)
T ss_pred ECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh-----CCccCCChHHHHHHHHHHHHhhhh-cccCCcc-----cccccc
Confidence 88752 22333334433221 1111 1222222223332222211 1222222 235799
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhhcCCEEEEEeCCeEEEc
Q 000720 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLVMKDGKIEQS 800 (1333)
Q Consensus 723 GGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~ 800 (1333)
.|||+|+++--|+.-+.|||+|||=-+.-||+-++..++..+-.++ .||||+.||||-.+...|||++.|++|++++.
T Consensus 451 tGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 451 TGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 529 (546)
T ss_pred cchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceeec
Confidence 9999999999999999999999999999999999988887765444 59999999999999999999999999999874
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-35 Score=332.36 Aligned_cols=187 Identities=32% Similarity=0.438 Sum_probs=152.3
Q ss_pred cccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC-----------------eEEEEcCCCCCC-
Q 000720 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-----------------KKAYVPQSSWIQ- 671 (1333)
Q Consensus 611 ~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g-----------------~iayv~Q~~~i~- 671 (1333)
..++++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++| +++|++|++.++
T Consensus 37 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i-~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 115 (269)
T cd03294 37 TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKV-LIDGQDIAAMSRKELRELRRKKISMVFQSFALLP 115 (269)
T ss_pred ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEE-EECCEEccccChhhhhhhhcCcEEEEecCcccCC
Confidence 357899 99999999999999999999999999999999999986 4433 489999999876
Q ss_pred CCCHHHHhccCCc---CCH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEE
Q 000720 672 TGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIF 744 (1333)
Q Consensus 672 ~~Tv~enI~~g~~---~~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illL 744 (1333)
+.|++||+.++.. .+. ++..++++.+++.+ ..+..+.+||||||||++||||++.+|+++||
T Consensus 116 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~Gq~qrv~lAral~~~p~illL 184 (269)
T cd03294 116 HRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEG-----------WEHKYPDELSGGMQQRVGLARALAVDPDILLM 184 (269)
T ss_pred CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHh-----------HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 5799999987532 111 12233344443322 23456779999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhh-cCCEEEEEeCCeEEEccChHHHHhh
Q 000720 745 DDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLIAD 809 (1333)
Q Consensus 745 DEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~~~~l~~~ 809 (1333)
||||++||+.+.+.+.+.+.+... .|+|+|++||+++.+. .||++++|++|++++.|+++++.++
T Consensus 185 DEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 185 DEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred cCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999998887765443333 3799999999999875 4999999999999999999988753
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-35 Score=336.38 Aligned_cols=201 Identities=30% Similarity=0.427 Sum_probs=163.4
Q ss_pred CccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC-------
Q 000720 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (1333)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g------- 659 (1333)
+..|+++|++++|+. ...+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 2 ~~~i~~~~l~~~~~~--------~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~ 72 (303)
T TIGR01288 2 NVAIDLVGVSKSYGD--------KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKI-TVLGEPVPSRA 72 (303)
T ss_pred CcEEEEEeEEEEeCC--------eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEECcccH
Confidence 346899999999963 358999 99999999999999999999999999999999999986 5554
Q ss_pred -----eEEEEcCCCCCC-CCCHHHHhccCCc---CCHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHH
Q 000720 660 -----KKAYVPQSSWIQ-TGTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1333)
Q Consensus 660 -----~iayv~Q~~~i~-~~Tv~enI~~g~~---~~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQk 726 (1333)
++||+||++.++ ..|++||+.+... .+.. +.++.++.+++. ...+.++.+||||||
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-----------~~~~~~~~~LSgG~~ 141 (303)
T TIGR01288 73 RLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLE-----------SKADVRVALLSGGMK 141 (303)
T ss_pred HHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh-----------hHhcCchhhCCHHHH
Confidence 489999998765 5799999975221 1211 112223333221 123456789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChHH
Q 000720 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYED 805 (1333)
Q Consensus 727 qRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~~ 805 (1333)
||++||||++++|+++||||||++||+.+++.+.+.+.+...+|+|||++||+++++.. ||+|++|++|+++..|++++
T Consensus 142 qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 221 (303)
T TIGR01288 142 RRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHA 221 (303)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999888876544433468999999999999865 99999999999999999988
Q ss_pred HHh
Q 000720 806 LIA 808 (1333)
Q Consensus 806 l~~ 808 (1333)
+..
T Consensus 222 ~~~ 224 (303)
T TIGR01288 222 LID 224 (303)
T ss_pred HHh
Confidence 864
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=331.20 Aligned_cols=201 Identities=27% Similarity=0.391 Sum_probs=166.2
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|+++.|+.. ..+.+++ ||+|++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 5 ~l~~~~l~~~~~~~------~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i-~~~g~~i~~~~~~ 77 (279)
T PRK13635 5 IIRVEHISFRYPDA------ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTI-TVGGMVLSEETVW 77 (279)
T ss_pred eEEEEEEEEEeCCC------CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEE-EECCEECCcCcHH
Confidence 58999999999642 2468999 99999999999999999999999999999999999986 6655
Q ss_pred ----eEEEEcCCC--CCCCCCHHHHhccCCcC---CH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHH
Q 000720 660 ----KKAYVPQSS--WIQTGTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1333)
Q Consensus 660 ----~iayv~Q~~--~i~~~Tv~enI~~g~~~---~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQk 726 (1333)
.++|++|+| .+++.|++|||.++... .. ++.+++++.+++.. .+..++.+||||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-----------~~~~~~~~LS~G~~ 146 (279)
T PRK13635 78 DVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMED-----------FLNREPHRLSGGQK 146 (279)
T ss_pred HHhhheEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChh-----------hhhCCcccCCHHHH
Confidence 379999998 46678999999886321 11 12333444444432 23456779999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhhcCCEEEEEeCCeEEEccChHH
Q 000720 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYED 805 (1333)
Q Consensus 727 qRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~~~ 805 (1333)
||++||||++.+|+++||||||++||+.+.+.+++.+.+...+ ++|+|++||+++.+..||+|++|++|++++.|+.++
T Consensus 147 qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (279)
T PRK13635 147 QRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEE 226 (279)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999988887654433333 789999999999987899999999999999999988
Q ss_pred HHh
Q 000720 806 LIA 808 (1333)
Q Consensus 806 l~~ 808 (1333)
+..
T Consensus 227 ~~~ 229 (279)
T PRK13635 227 IFK 229 (279)
T ss_pred Hhc
Confidence 765
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=321.50 Aligned_cols=197 Identities=25% Similarity=0.438 Sum_probs=160.5
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|+++.|+.. ..+++++ |+++++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 1 l~~~~l~~~~~~~------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 73 (220)
T cd03263 1 LQIRNLTKTYKKG------TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTA-YINGYSIRTDRKAA 73 (220)
T ss_pred CEEEeeEEEeCCC------CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEecccchHHH
Confidence 4688999999642 2468999 99999999999999999999999999999999999986 5554
Q ss_pred --eEEEEcCCCCCC-CCCHHHHhccCCc---CCH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHH
Q 000720 660 --KKAYVPQSSWIQ-TGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1333)
Q Consensus 660 --~iayv~Q~~~i~-~~Tv~enI~~g~~---~~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv 729 (1333)
+++|++|++.++ ..|++||+.+... ... ++.+++++.+++.+ ..+....+||||||||+
T Consensus 74 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv 142 (220)
T cd03263 74 RQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTD-----------KANKRARTLSGGMKRKL 142 (220)
T ss_pred hhhEEEecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-----------HHhChhhhCCHHHHHHH
Confidence 379999998766 6799999987432 111 22334444444321 22356679999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChHHH
Q 000720 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDL 806 (1333)
Q Consensus 730 ~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~~l 806 (1333)
+||||++.+|+++||||||++||+.+.+.+.+ .++...+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 143 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 143 SLAIALIGGPSVLLLDEPTSGLDPASRRAIWD-LILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HHHHHHhcCCCEEEECCCCCCCCHHHHHHHHH-HHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 99999999999999999999999999887776 44455557999999999999865 999999999999999987764
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-35 Score=323.14 Aligned_cols=191 Identities=29% Similarity=0.390 Sum_probs=152.6
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++++|+... ...+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 1 l~~~~l~~~~~~~~----~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i-~~~g~~~~~~~~~~ 75 (218)
T cd03255 1 IELKNLSKTYGGGG----EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEV-RVDGTDISKLSEKE 75 (218)
T ss_pred CeEeeeEEEecCCC----cceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeE-EECCEehhhcchhH
Confidence 46889999996420 11468999 99999999999999999999999999999999999986 4432
Q ss_pred -------eEEEEcCCCCCCC-CCHHHHhccCCcCC---H----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChH
Q 000720 660 -------KKAYVPQSSWIQT-GTIRENILFGKDMR---Q----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1333)
Q Consensus 660 -------~iayv~Q~~~i~~-~Tv~enI~~g~~~~---~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGG 724 (1333)
.++|++|++.++. .|++||+.++.... . ++.++.++..++. ...++++.+||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G 144 (218)
T cd03255 76 LAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLG-----------DRLNHYPSELSGG 144 (218)
T ss_pred HHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCc-----------hhhhcChhhcCHH
Confidence 4899999987765 59999998864321 1 1223333333332 2234677899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhhcCCEEEEEeCCeE
Q 000720 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLVMKDGKI 797 (1333)
Q Consensus 725 QkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~~aD~i~vl~~G~i 797 (1333)
||||++||||++.+|+++||||||++||+.+.+.+.+.+.+... +++|+|++||+++.+..||++++|++|++
T Consensus 145 ~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 145 QQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 99999999999999999999999999999998877764443333 47999999999998878999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=316.10 Aligned_cols=188 Identities=26% Similarity=0.418 Sum_probs=158.7
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--------
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g-------- 659 (1333)
..++++|++++|+.. ..+.+++ |+++++||+++|+|+||||||||+++|+|+.+|.+|++ .++|
T Consensus 5 ~~l~~~~l~~~~~~~------~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~ 77 (207)
T cd03369 5 GEIEVENLSVRYAPD------LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKI-EIDGIDISTIPL 77 (207)
T ss_pred CeEEEEEEEEEeCCC------CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeE-EECCEEhHHCCH
Confidence 469999999999743 2368999 99999999999999999999999999999999999986 5654
Q ss_pred -----eEEEEcCCCCCCCCCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHH
Q 000720 660 -----KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734 (1333)
Q Consensus 660 -----~iayv~Q~~~i~~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARA 734 (1333)
.++|++|+|.++++|++||+.+......+ ++.+.+. +++++.+||||||||++||||
T Consensus 78 ~~~~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~---~~~~~l~---------------~~~~~~~LS~G~~qrv~lara 139 (207)
T cd03369 78 EDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDE---EIYGALR---------------VSEGGLNLSQGQRQLLCLARA 139 (207)
T ss_pred HHHHhhEEEEecCCcccCccHHHHhcccCCCCHH---HHHHHhh---------------ccCCCCcCCHHHHHHHHHHHH
Confidence 48999999998889999999765433322 2222211 346788999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccC
Q 000720 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGK 802 (1333)
Q Consensus 735 l~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~ 802 (1333)
++.+|+++||||||++||+...+.+.+. ++...+++|+|++||+++.+..||++++|++|++.+.|+
T Consensus 140 l~~~p~llllDEP~~~LD~~~~~~l~~~-l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 140 LLKRPRVLVLDEATASIDYATDALIQKT-IREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206 (207)
T ss_pred HhhCCCEEEEeCCcccCCHHHHHHHHHH-HHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCC
Confidence 9999999999999999999998777654 444456899999999999987799999999999988775
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=325.73 Aligned_cols=202 Identities=22% Similarity=0.345 Sum_probs=166.0
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCc---CCCCcEEEECC------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP---RISGAAIKVHG------ 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~---~~~G~~i~~~g------ 659 (1333)
.|+++|+++.|+. .+.+++ ||++++||+++|+||||||||||+++|+|+.+ |++|++ .++|
T Consensus 2 ~~~~~~l~~~~~~--------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i-~~~g~~i~~~ 72 (246)
T PRK14269 2 IAKTTNLNLFYGK--------KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLV-EIEGKDVKNQ 72 (246)
T ss_pred ceeeeeeEEEECC--------EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEE-EECCEecccC
Confidence 4789999999963 368999 99999999999999999999999999999974 688986 5554
Q ss_pred -------eEEEEcCCCCCCCCCHHHHhccCCcCC---------HHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCCh
Q 000720 660 -------KKAYVPQSSWIQTGTIRENILFGKDMR---------QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1333)
Q Consensus 660 -------~iayv~Q~~~i~~~Tv~enI~~g~~~~---------~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSG 723 (1333)
+++|+||++.+++.|++||+.++.... .++..+.++.+++.+.+.. ..++++.+|||
T Consensus 73 ~~~~~~~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~ 145 (246)
T PRK14269 73 DVVALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKD-------KLKQNALALSG 145 (246)
T ss_pred CHHHHhhhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhH-------HhcCCcccCCH
Confidence 379999999888899999998753211 1123345555555433221 23467789999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeEEEccC
Q 000720 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGK 802 (1333)
Q Consensus 724 GQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~ 802 (1333)
|||||++||||++++|+++||||||++||+.+...+.+ ++....+++|+|++||+++.+. .||++++|++|++++.|+
T Consensus 146 G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~-~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~ 224 (246)
T PRK14269 146 GQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEE-LLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGE 224 (246)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999877765 4554556899999999999886 599999999999999999
Q ss_pred hHHHHh
Q 000720 803 YEDLIA 808 (1333)
Q Consensus 803 ~~~l~~ 808 (1333)
.+++..
T Consensus 225 ~~~~~~ 230 (246)
T PRK14269 225 SKEFFE 230 (246)
T ss_pred HHHHHh
Confidence 998865
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=318.03 Aligned_cols=217 Identities=29% Similarity=0.408 Sum_probs=172.8
Q ss_pred cEEEeeeEEEcCCcccc--------------cC--CCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCC
Q 000720 590 AIDIEAGEYAWDAREEN--------------FK--KPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISG 652 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~--------------~~--~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G 652 (1333)
.|+++|++.-+.++... .+ ....-++| ||+|++||+..|.|-+|||||||+++|.++++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 57788877766544110 00 11223677 999999999999999999999999999999999999
Q ss_pred cEEEECC-----------------eEEEEcCCCC-CCCCCHHHHhccCCcCC----HHHH---HHHHHHcccchHHHhhc
Q 000720 653 AAIKVHG-----------------KKAYVPQSSW-IQTGTIRENILFGKDMR----QSFY---EEVLEGCALNQDIEMWA 707 (1333)
Q Consensus 653 ~~i~~~g-----------------~iayv~Q~~~-i~~~Tv~enI~~g~~~~----~~~~---~~v~~~~~l~~d~~~~~ 707 (1333)
++ .++| ++++|+|+-- ++..||.||+.||.+.. .++. .+.++..+|...
T Consensus 84 ~i-lv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~----- 157 (386)
T COG4175 84 EI-LVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGY----- 157 (386)
T ss_pred eE-EECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhh-----
Confidence 97 7766 4699999965 56789999999997643 2333 334444554432
Q ss_pred CCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhh-hc
Q 000720 708 DGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFL-DA 785 (1333)
Q Consensus 708 ~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l-~~ 785 (1333)
-...+.+|||||||||.|||||..+|||+|+|||||||||-.+.+.-+++++.-. -+||||+||||+++. +.
T Consensus 158 ------~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlri 231 (386)
T COG4175 158 ------ADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRI 231 (386)
T ss_pred ------hhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhc
Confidence 2256789999999999999999999999999999999999988888777665433 379999999999875 66
Q ss_pred CCEEEEEeCCeEEEccChHHHHhhcchHHHHHH
Q 000720 786 ADLVLVMKDGKIEQSGKYEDLIADQNSELVRQM 818 (1333)
Q Consensus 786 aD~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~ 818 (1333)
.|||.+|+||+|++.|+++|+..++..+|...+
T Consensus 232 G~rIaimkdG~ivQ~Gtp~eIl~~PAndYV~~F 264 (386)
T COG4175 232 GDRIAIMKDGEIVQVGTPEEILLNPANDYVRDF 264 (386)
T ss_pred cceEEEecCCeEEEeCCHHHHHcCccHHHHHHH
Confidence 999999999999999999999987766665543
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=333.03 Aligned_cols=204 Identities=24% Similarity=0.396 Sum_probs=163.6
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.|+++|++++|+.... ...++++| ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 2 ~i~~~~l~~~~~~~~~---~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~ 77 (287)
T PRK13641 2 SIKFENVDYIYSPGTP---MEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTI-TIAGYHITPETGN 77 (287)
T ss_pred EEEEEEEEEEcCCCCC---ccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE-EECCEECcccccc
Confidence 4789999999974200 02468999 99999999999999999999999999999999999986 5544
Q ss_pred --------eEEEEcCCC--CCCCCCHHHHhccCCc---CCHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCCC
Q 000720 660 --------KKAYVPQSS--WIQTGTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1333)
Q Consensus 660 --------~iayv~Q~~--~i~~~Tv~enI~~g~~---~~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LS 722 (1333)
.++|++|+| .+++.|++||+.++.. ...+ +.++.++.+++..+ ..+.++.+||
T Consensus 78 ~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~----------~~~~~~~~LS 147 (287)
T PRK13641 78 KNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSED----------LISKSPFELS 147 (287)
T ss_pred chHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChh----------HhhCCcccCC
Confidence 379999997 4667899999987532 1111 22333343433211 2346788999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEecCchhhhh-cCCEEEEEeCCeEEEc
Q 000720 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQS 800 (1333)
Q Consensus 723 GGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~-~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~ 800 (1333)
||||||++||||++.+|+++||||||++||+...+.+.+. ++.+ .++.|+|++||+++.+. .||++++|++|++++.
T Consensus 148 gGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~-l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~ 226 (287)
T PRK13641 148 GGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQL-FKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKH 226 (287)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999998877664 4444 35899999999999975 5999999999999999
Q ss_pred cChHHHHh
Q 000720 801 GKYEDLIA 808 (1333)
Q Consensus 801 g~~~~l~~ 808 (1333)
|+++++..
T Consensus 227 g~~~~~~~ 234 (287)
T PRK13641 227 ASPKEIFS 234 (287)
T ss_pred CCHHHHhc
Confidence 99988764
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=330.89 Aligned_cols=199 Identities=29% Similarity=0.394 Sum_probs=163.3
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++++|+.+ .+.+++ ||+|++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 2 l~~~~l~~~~~~~-------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~ 73 (274)
T PRK13644 2 IRLENVSYSYPDG-------TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKV-LVSGIDTGDFSKLQ 73 (274)
T ss_pred EEEEEEEEEcCCC-------CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE-EECCEECCccccHH
Confidence 6789999999632 358999 99999999999999999999999999999999999986 5543
Q ss_pred ----eEEEEcCCCC--CCCCCHHHHhccCCcC---CHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHH
Q 000720 660 ----KKAYVPQSSW--IQTGTIRENILFGKDM---RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1333)
Q Consensus 660 ----~iayv~Q~~~--i~~~Tv~enI~~g~~~---~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQk 726 (1333)
.++|++|+|. +++.|++||+.++... +.. +.+++++.+++. ...+..+.+||||||
T Consensus 74 ~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LS~G~~ 142 (274)
T PRK13644 74 GIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLE-----------KYRHRSPKTLSGGQG 142 (274)
T ss_pred HHHhheEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCH-----------HHhcCCcccCCHHHH
Confidence 3799999985 5678999999886421 211 222333333332 223467789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccChHHH
Q 000720 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDL 806 (1333)
Q Consensus 727 qRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~~~l 806 (1333)
||++||||++.+|+++||||||++||+.++..+.+.+.+...+|+|+|++||+++.++.||+|++|++|++++.|+.+++
T Consensus 143 qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 222 (274)
T PRK13644 143 QCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENV 222 (274)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999888776544333458999999999999878999999999999999999887
Q ss_pred Hh
Q 000720 807 IA 808 (1333)
Q Consensus 807 ~~ 808 (1333)
..
T Consensus 223 ~~ 224 (274)
T PRK13644 223 LS 224 (274)
T ss_pred hc
Confidence 65
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=321.92 Aligned_cols=198 Identities=26% Similarity=0.388 Sum_probs=158.9
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 1 l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 71 (222)
T cd03224 1 LEVENLNAGYGK--------SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSI-RFDGRDITGLPPHE 71 (222)
T ss_pred CEEeeEEeecCC--------eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEEcCCCCHHH
Confidence 468899999853 258999 99999999999999999999999999999999999986 5543
Q ss_pred ----eEEEEcCCCCCCC-CCHHHHhccCCcCC--HH---HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHH
Q 000720 660 ----KKAYVPQSSWIQT-GTIRENILFGKDMR--QS---FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1333)
Q Consensus 660 ----~iayv~Q~~~i~~-~Tv~enI~~g~~~~--~~---~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv 729 (1333)
.++|++|++.++. .|++||+.++.... .+ ..+++++.. ..+ ....+.++.+||||||||+
T Consensus 72 ~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~------~~l----~~~~~~~~~~LS~G~~qrv 141 (222)
T cd03224 72 RARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELF------PRL----KERRKQLAGTLSGGEQQML 141 (222)
T ss_pred HHhcCeEEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHH------Hhh----hhhhhCchhhCCHHHHHHH
Confidence 3799999997665 59999998764322 11 111222211 111 1223467889999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChHHHH
Q 000720 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLI 807 (1333)
Q Consensus 730 ~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~~l~ 807 (1333)
+||||++.+|+++||||||++||+.+++.+.+.+.+...+++|+|++||+++.+.. ||++++|++|++++.|+.+++.
T Consensus 142 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 142 AIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred HHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 99999999999999999999999999887776544333367899999999998755 9999999999999999887764
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-35 Score=344.17 Aligned_cols=199 Identities=25% Similarity=0.420 Sum_probs=164.7
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|++++|+. ...+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 3 ~L~~~nls~~y~~--------~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I-~l~G~~i~~~~~~ 73 (402)
T PRK09536 3 MIDVSDLSVEFGD--------TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTV-LVAGDDVEALSAR 73 (402)
T ss_pred eEEEeeEEEEECC--------EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEE-EECCEEcCcCCHH
Confidence 4889999999963 368999 99999999999999999999999999999999999986 6654
Q ss_pred ----eEEEEcCCCCC-CCCCHHHHhccCCc-----CC---H---HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCCh
Q 000720 660 ----KKAYVPQSSWI-QTGTIRENILFGKD-----MR---Q---SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1333)
Q Consensus 660 ----~iayv~Q~~~i-~~~Tv~enI~~g~~-----~~---~---~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSG 723 (1333)
++||++|++.+ ++.|++||+.++.. +. . ++.++.++..++. ...++...+|||
T Consensus 74 ~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~-----------~~~~~~~~~LSg 142 (402)
T PRK09536 74 AASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVA-----------QFADRPVTSLSG 142 (402)
T ss_pred HHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCc-----------hhhcCChhhCCH
Confidence 37999999875 67899999998752 11 1 1223333333332 122456789999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeEEEccC
Q 000720 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGK 802 (1333)
Q Consensus 724 GQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~ 802 (1333)
|||||++|||||+++|+++||||||++||+.++.++.+.+.+...+++|+|++||+++.+. .||++++|++|++++.|+
T Consensus 143 GerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~ 222 (402)
T PRK09536 143 GERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGP 222 (402)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecC
Confidence 9999999999999999999999999999999988887644333345789999999999985 599999999999999999
Q ss_pred hHHHHh
Q 000720 803 YEDLIA 808 (1333)
Q Consensus 803 ~~~l~~ 808 (1333)
+++++.
T Consensus 223 ~~ev~~ 228 (402)
T PRK09536 223 PADVLT 228 (402)
T ss_pred HHHHhC
Confidence 999875
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-35 Score=320.07 Aligned_cols=188 Identities=31% Similarity=0.479 Sum_probs=151.1
Q ss_pred EeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--------eEEE
Q 000720 593 IEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------KKAY 663 (1333)
Q Consensus 593 i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------~iay 663 (1333)
++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+.+|++|++ .++| +++|
T Consensus 2 ~~~l~~~~~~--------~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i-~~~g~~~~~~~~~i~~ 72 (213)
T cd03235 2 VEDLTVSYGG--------HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSI-RVFGKPLEKERKRIGY 72 (213)
T ss_pred cccceeEECC--------EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEE-EECCccHHHHHhheEE
Confidence 5788888853 357999 99999999999999999999999999999999999986 7766 3899
Q ss_pred EcCCCCC---CCCCHHHHhccCCcC--------C---HHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHH
Q 000720 664 VPQSSWI---QTGTIRENILFGKDM--------R---QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1333)
Q Consensus 664 v~Q~~~i---~~~Tv~enI~~g~~~--------~---~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv 729 (1333)
++|++.+ ++.|++||+.++... . .++.+++++.+++.+ ....++.+||||||||+
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~~qrv 141 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSE-----------LADRQIGELSGGQQQRV 141 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHH-----------HHhCCcccCCHHHHHHH
Confidence 9999865 457999999875421 1 122333444444332 12356789999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEcc
Q 000720 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1333)
Q Consensus 730 ~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g 801 (1333)
+||||++.+|+++||||||++||+.+.+.+.+.+.+...+++|+|++||+++++.. ||++++|++| +++.|
T Consensus 142 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 142 LLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999999999999999888876544433468999999999999865 9999999986 55443
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=323.47 Aligned_cols=198 Identities=25% Similarity=0.372 Sum_probs=159.5
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|..+|++|++ .++|
T Consensus 1 l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~ 71 (232)
T cd03218 1 LRAENLSKRYGK--------RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKI-LLDGQDITKLPMHK 71 (232)
T ss_pred CeEEEEEEEeCC--------EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEecccCCHhH
Confidence 468899999963 358999 99999999999999999999999999999999999986 5543
Q ss_pred ----eEEEEcCCCCCCC-CCHHHHhccCCcC---CHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHH
Q 000720 660 ----KKAYVPQSSWIQT-GTIRENILFGKDM---RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (1333)
Q Consensus 660 ----~iayv~Q~~~i~~-~Tv~enI~~g~~~---~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkq 727 (1333)
.++|++|++.++. .|++||+.++... ... +.++.++..++ ....++.+.+|||||||
T Consensus 72 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~q 140 (232)
T cd03218 72 RARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHI-----------THLRKSKASSLSGGERR 140 (232)
T ss_pred HHhccEEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----------hhhhhCChhhCCHHHHH
Confidence 3799999987665 5999999875321 111 11222222222 22345678899999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChHHH
Q 000720 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDL 806 (1333)
Q Consensus 728 Rv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~~l 806 (1333)
|++||||++.+|+++||||||++||+.+.+.+.+.+.+...+++|+|++||+++.+.. ||++++|++|++++.|+.+++
T Consensus 141 rl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 220 (232)
T cd03218 141 RVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEI 220 (232)
T ss_pred HHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHh
Confidence 9999999999999999999999999999887776443333457899999999987754 999999999999999998887
Q ss_pred Hh
Q 000720 807 IA 808 (1333)
Q Consensus 807 ~~ 808 (1333)
..
T Consensus 221 ~~ 222 (232)
T cd03218 221 AA 222 (232)
T ss_pred hc
Confidence 54
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=326.14 Aligned_cols=196 Identities=27% Similarity=0.309 Sum_probs=160.8
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--------
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g-------- 659 (1333)
..++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 11 ~~l~i~~l~~~~~~--------~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i-~~~g~~~~~~~~ 81 (257)
T PRK11247 11 TPLLLNAVSKRYGE--------RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGEL-LAGTAPLAEARE 81 (257)
T ss_pred CcEEEEEEEEEECC--------cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEE-EECCEEHHHhhC
Confidence 45999999999963 358999 99999999999999999999999999999999999986 5654
Q ss_pred eEEEEcCCCCCCC-CCHHHHhccCCcC-CHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHcc
Q 000720 660 KKAYVPQSSWIQT-GTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS 737 (1333)
Q Consensus 660 ~iayv~Q~~~i~~-~Tv~enI~~g~~~-~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~ 737 (1333)
.++|++|++.++. .|++||+.++... .+.+..+.++..++.. ..++++.+||||||||++||||++.
T Consensus 82 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgGqkqrl~laraL~~ 150 (257)
T PRK11247 82 DTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLAD-----------RANEWPAALSGGQKQRVALARALIH 150 (257)
T ss_pred ceEEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChh-----------HhcCChhhCCHHHHHHHHHHHHHhc
Confidence 4899999987665 7999999876321 1223334444444422 2346778999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhh-cCCEEEEEeCCeEEEccChH
Q 000720 738 NSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYE 804 (1333)
Q Consensus 738 ~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~~~ 804 (1333)
+|+++||||||++||+.+...+.+.+.+... .++|+|++|||++++. .||+|++|++|++++.|+.+
T Consensus 151 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 151 RPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999999998877764433333 4789999999999875 59999999999999887654
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=322.95 Aligned_cols=202 Identities=27% Similarity=0.364 Sum_probs=161.2
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
|+++|++++|+... ...+++++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 2 i~~~~l~~~~~~~~----~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 76 (233)
T cd03258 2 IELKNVSKVFGDTG----GKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSV-LVDGTDLTLLSGKE 76 (233)
T ss_pred eEEecceEEccCCC----CceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEEcccCCHHH
Confidence 67899999996420 11368999 99999999999999999999999999999999999986 5443
Q ss_pred ------eEEEEcCCCCCCC-CCHHHHhccCCc---CCHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHH
Q 000720 660 ------KKAYVPQSSWIQT-GTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1333)
Q Consensus 660 ------~iayv~Q~~~i~~-~Tv~enI~~g~~---~~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQ 725 (1333)
.++|+||++.++. .|++||+.++.. .+.. ...+.++..++ ....+....+|||||
T Consensus 77 ~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~ 145 (233)
T cd03258 77 LRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGL-----------EDKADAYPAQLSGGQ 145 (233)
T ss_pred HHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCC-----------hhhhhcChhhCCHHH
Confidence 3799999998765 799999987532 1111 11222232222 123345678999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhhc-CCEEEEEeCCeEEEccCh
Q 000720 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKY 803 (1333)
Q Consensus 726 kqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~ 803 (1333)
|||++||||++.+|+++||||||++||+...+.+.+.+.....+ ++|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 146 ~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~ 225 (233)
T cd03258 146 KQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTV 225 (233)
T ss_pred HHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCH
Confidence 99999999999999999999999999999988777644443343 7999999999999865 999999999999999988
Q ss_pred HHHHh
Q 000720 804 EDLIA 808 (1333)
Q Consensus 804 ~~l~~ 808 (1333)
+++.+
T Consensus 226 ~~~~~ 230 (233)
T cd03258 226 EEVFA 230 (233)
T ss_pred HHHhc
Confidence 87754
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=323.69 Aligned_cols=198 Identities=22% Similarity=0.368 Sum_probs=162.2
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++++|+. .+.+++ |+++++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 2 l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i-~~~g~~i~~~~~~~ 72 (236)
T TIGR03864 2 LEVAGLSFAYGA--------RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQI-SVAGHDLRRAPRAA 72 (236)
T ss_pred EEEEeeEEEECC--------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEE-EECCEEcccCChhh
Confidence 678999999963 358999 99999999999999999999999999999999999986 5554
Q ss_pred --eEEEEcCCCCC-CCCCHHHHhccCCcC---CHHH----HHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHH
Q 000720 660 --KKAYVPQSSWI-QTGTIRENILFGKDM---RQSF----YEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1333)
Q Consensus 660 --~iayv~Q~~~i-~~~Tv~enI~~g~~~---~~~~----~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv 729 (1333)
.++|++|++.+ +..|++||+.++... .... ..+.++.. |.....++++.+||||||||+
T Consensus 73 ~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LS~G~~qrl 141 (236)
T TIGR03864 73 LARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARL-----------GLAERADDKVRELNGGHRRRV 141 (236)
T ss_pred hhhEEEeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CChhhhcCChhhCCHHHHHHH
Confidence 37999999876 578999999865321 1111 11222222 222334577889999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhhcCCEEEEEeCCeEEEccChHHHHh
Q 000720 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 730 ~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
+||||++.+|+++||||||++||+.+.+.+.+.+.+... +++|+|++||+++.+..||++++|++|++++.|+++++.+
T Consensus 142 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (236)
T TIGR03864 142 EIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRG 221 (236)
T ss_pred HHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHH
Confidence 999999999999999999999999998888765443332 4799999999999987799999999999999999888865
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-35 Score=332.86 Aligned_cols=200 Identities=29% Similarity=0.428 Sum_probs=167.8
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|++..|.. ....|++ ||++++||++|++||||||||||+++|+|+++|++|++ .++|
T Consensus 4 ~i~~~~l~k~~~~-------~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i-~i~G~~~~~~~~~ 75 (293)
T COG1131 4 VIEVRNLTKKYGG-------DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI-LVLGYDVVKEPAK 75 (293)
T ss_pred eeeecceEEEeCC-------CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEE-EEcCEeCccCHHH
Confidence 4778899998863 2478999 99999999999999999999999999999999999986 7765
Q ss_pred ---eEEEEcCCCCC-CCCCHHHHhccCCcC-------CHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHH
Q 000720 660 ---KKAYVPQSSWI-QTGTIRENILFGKDM-------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728 (1333)
Q Consensus 660 ---~iayv~Q~~~i-~~~Tv~enI~~g~~~-------~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqR 728 (1333)
++||+||+|.+ ...|++||+.|.... +.++.+++++..+|.++. +.+..+||+|||||
T Consensus 76 ~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~lS~G~kqr 144 (293)
T COG1131 76 VRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-----------NKKVRTLSGGMKQR 144 (293)
T ss_pred HHhheEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-----------CcchhhcCHHHHHH
Confidence 48999999865 567999999874322 234556666666654311 35678999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CeEEEecCchhhhhc-CCEEEEEeCCeEEEccChHHH
Q 000720 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-KTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDL 806 (1333)
Q Consensus 729 v~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~-~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~~l 806 (1333)
++||+||.++|++++|||||+||||..+..+.+.+.....++ +||+++||.++.++. ||+|++|++|++++.|+.+++
T Consensus 145 l~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l 224 (293)
T COG1131 145 LSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEEL 224 (293)
T ss_pred HHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 999999999999999999999999999887776544444556 799999999999876 999999999999999998887
Q ss_pred Hh
Q 000720 807 IA 808 (1333)
Q Consensus 807 ~~ 808 (1333)
..
T Consensus 225 ~~ 226 (293)
T COG1131 225 KE 226 (293)
T ss_pred HH
Confidence 54
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=321.04 Aligned_cols=203 Identities=30% Similarity=0.442 Sum_probs=167.1
Q ss_pred CccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC-------
Q 000720 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (1333)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g------- 659 (1333)
...++++|++++|+.+ ...+.+++ |+++++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 9 ~~~l~~~~l~~~~~~~-----~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~ 82 (226)
T cd03248 9 KGIVKFQNVTFAYPTR-----PDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQV-LLDGKPISQYE 82 (226)
T ss_pred CceEEEEEEEEEeCCC-----CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEE-EECCCchHHcC
Confidence 4569999999999753 22468999 99999999999999999999999999999999999986 6654
Q ss_pred ------eEEEEcCCCCCCCCCHHHHhccCCcCC-HHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHH
Q 000720 660 ------KKAYVPQSSWIQTGTIRENILFGKDMR-QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732 (1333)
Q Consensus 660 ------~iayv~Q~~~i~~~Tv~enI~~g~~~~-~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LA 732 (1333)
+++|++|++.+++.|++||+.++.... .....+..+.....+.++.++.|..+..++++.+||||||||++||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~la 162 (226)
T cd03248 83 HKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIA 162 (226)
T ss_pred HHHHHhhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHH
Confidence 479999999888889999998765321 1112222233334455666666666777888999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeE
Q 000720 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKI 797 (1333)
Q Consensus 733 RAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i 797 (1333)
||++++|+++||||||++||+++.+.+.+. ++.+.+++|+|++||+++++..||+|++|++|++
T Consensus 163 ral~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 163 RALIRNPQVLILDEATSALDAESEQQVQQA-LYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999998877664 4445557899999999999877999999999974
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=338.04 Aligned_cols=201 Identities=29% Similarity=0.410 Sum_probs=164.7
Q ss_pred CccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC-------
Q 000720 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (1333)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g------- 659 (1333)
...|+++|++++|+. ...+++ ||+|++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 39 ~~~i~i~nl~k~y~~--------~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i-~i~G~~~~~~~ 109 (340)
T PRK13536 39 TVAIDLAGVSKSYGD--------KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKI-TVLGVPVPARA 109 (340)
T ss_pred ceeEEEEEEEEEECC--------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEE-EECCEECCcch
Confidence 346999999999964 358999 99999999999999999999999999999999999986 6655
Q ss_pred -----eEEEEcCCCCCC-CCCHHHHhccCCcC---CHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHH
Q 000720 660 -----KKAYVPQSSWIQ-TGTIRENILFGKDM---RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1333)
Q Consensus 660 -----~iayv~Q~~~i~-~~Tv~enI~~g~~~---~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQk 726 (1333)
.+||+||++.++ ..|++||+.+.... +.. +.+++++.+++. ...+++..+||||||
T Consensus 110 ~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~-----------~~~~~~~~~LS~G~k 178 (340)
T PRK13536 110 RLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLE-----------SKADARVSDLSGGMK 178 (340)
T ss_pred HHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-----------hhhCCChhhCCHHHH
Confidence 379999998764 67999999753211 111 122233333222 123466789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChHH
Q 000720 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYED 805 (1333)
Q Consensus 727 qRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~~ 805 (1333)
||++||||++++|+++||||||+|||+.+++.+.+.+.+...+|+|||++||+++.++. ||+|++|++|+++..|++++
T Consensus 179 qrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~ 258 (340)
T PRK13536 179 RRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHA 258 (340)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999888876554433468999999999999865 99999999999999999999
Q ss_pred HHh
Q 000720 806 LIA 808 (1333)
Q Consensus 806 l~~ 808 (1333)
+..
T Consensus 259 l~~ 261 (340)
T PRK13536 259 LID 261 (340)
T ss_pred HHh
Confidence 865
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=319.61 Aligned_cols=191 Identities=29% Similarity=0.408 Sum_probs=154.6
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
|+++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+++|.+|++ .++|
T Consensus 1 i~~~~l~~~~~~--------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v-~~~g~~~~~~~~~~ 71 (213)
T cd03301 1 VELENVTKRFGN--------VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRI-YIGGRDVTDLPPKD 71 (213)
T ss_pred CEEEeeEEEECC--------eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEECCcCCccc
Confidence 468999999864 258999 99999999999999999999999999999999999986 5544
Q ss_pred -eEEEEcCCCCCC-CCCHHHHhccCCcC---CHHH----HHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHH
Q 000720 660 -KKAYVPQSSWIQ-TGTIRENILFGKDM---RQSF----YEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1333)
Q Consensus 660 -~iayv~Q~~~i~-~~Tv~enI~~g~~~---~~~~----~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~ 730 (1333)
+++|++|++.++ +.|++||+.++... .... .++.++..++. ...++.+.+||||||||++
T Consensus 72 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qr~~ 140 (213)
T cd03301 72 RDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIE-----------HLLDRKPKQLSGGQRQRVA 140 (213)
T ss_pred ceEEEEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH-----------HHHhCChhhCCHHHHHHHH
Confidence 489999999876 56999999875321 1111 12223333222 2234677899999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhhc-CCEEEEEeCCeEEEcc
Q 000720 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1333)
Q Consensus 731 LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g 801 (1333)
||||++.+|+++||||||++||+++.+.+.+.+.+... .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 141 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 141 LGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999998888765444333 37999999999998765 9999999999998765
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-35 Score=299.20 Aligned_cols=198 Identities=22% Similarity=0.346 Sum_probs=158.8
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
+++.+.+.+|++ ....++| +|++++||+++|.|||||||||+|+.|.+++.|++|.+ .++|
T Consensus 2 l~v~~l~K~y~~-------~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v-~idg~d~~~~p~~v 73 (245)
T COG4555 2 LEVTDLTKSYGS-------KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKV-TIDGVDTVRDPSFV 73 (245)
T ss_pred eeeeehhhhccC-------HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceE-EEeecccccChHHH
Confidence 456777777754 2346889 99999999999999999999999999999999999986 6554
Q ss_pred --eEEEEcCCCC-CCCCCHHHHhccCCcCC-------HHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHH
Q 000720 660 --KKAYVPQSSW-IQTGTIRENILFGKDMR-------QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1333)
Q Consensus 660 --~iayv~Q~~~-i~~~Tv~enI~~g~~~~-------~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv 729 (1333)
++|.++.+.- ....|+||||.|....+ +.+.+++.+..++. ...+++..++|.||||||
T Consensus 74 rr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~-----------~~~~rRv~~~S~G~kqkV 142 (245)
T COG4555 74 RRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLL-----------EYLDRRVGEFSTGMKQKV 142 (245)
T ss_pred hhhcceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChH-----------HHHHHHHhhhchhhHHHH
Confidence 5788885544 45689999998743221 22333333333222 234578889999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChHHHH
Q 000720 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLI 807 (1333)
Q Consensus 730 ~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~~l~ 807 (1333)
+|||||.+||++|+||||+||||..+.+.+- +.+...+ .|++||++||.++.++. ||+|+++++|+++..|+.+++.
T Consensus 143 ~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~-dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~ 221 (245)
T COG4555 143 AIARALVHDPSILVLDEPTSGLDIRTRRKFH-DFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALD 221 (245)
T ss_pred HHHHHHhcCCCeEEEcCCCCCccHHHHHHHH-HHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHH
Confidence 9999999999999999999999998866554 4555544 58999999999999985 9999999999999999999887
Q ss_pred h
Q 000720 808 A 808 (1333)
Q Consensus 808 ~ 808 (1333)
.
T Consensus 222 ~ 222 (245)
T COG4555 222 A 222 (245)
T ss_pred H
Confidence 5
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=330.72 Aligned_cols=200 Identities=23% Similarity=0.384 Sum_probs=164.7
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|++++|+.+ .+++++ ||++++||+++|+||||||||||+++|+|+++|.+|++ .++|
T Consensus 5 ~l~~~~l~~~~~~~-------~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i-~i~g~~~~~~~~~ 76 (283)
T PRK13636 5 ILKVEELNYNYSDG-------THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI-LFDGKPIDYSRKG 76 (283)
T ss_pred eEEEEeEEEEeCCC-------CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEE-EECCEECCCCcch
Confidence 58999999999632 358999 99999999999999999999999999999999999986 5554
Q ss_pred ------eEEEEcCCC--CCCCCCHHHHhccCCc---CCH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChH
Q 000720 660 ------KKAYVPQSS--WIQTGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1333)
Q Consensus 660 ------~iayv~Q~~--~i~~~Tv~enI~~g~~---~~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGG 724 (1333)
.++|++|+| .+++.|++||+.++.. ... ++.++.++.+++.. ..+.++.+||||
T Consensus 77 ~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-----------~~~~~~~~LS~G 145 (283)
T PRK13636 77 LMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEH-----------LKDKPTHCLSFG 145 (283)
T ss_pred HHHHHhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChh-----------hhhCCcccCCHH
Confidence 379999998 4677899999987532 111 22233344444421 234678899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhh-cCCEEEEEeCCeEEEccC
Q 000720 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGK 802 (1333)
Q Consensus 725 QkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~ 802 (1333)
||||++|||||+.+|+++||||||+|||+...+.+.+.+.+...+ |+|||++||+++.+. .||++++|++|++++.|+
T Consensus 146 ~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~ 225 (283)
T PRK13636 146 QKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGN 225 (283)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999988777644333333 799999999999986 599999999999999999
Q ss_pred hHHHHh
Q 000720 803 YEDLIA 808 (1333)
Q Consensus 803 ~~~l~~ 808 (1333)
++++..
T Consensus 226 ~~~~~~ 231 (283)
T PRK13636 226 PKEVFA 231 (283)
T ss_pred HHHHhc
Confidence 998875
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=322.36 Aligned_cols=197 Identities=26% Similarity=0.310 Sum_probs=158.3
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|++++|+.+. ...+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 5 ~l~~~~l~~~~~~~~----~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~i~~~~~~ 79 (233)
T PRK11629 5 LLQCDNLCKRYQEGS----VQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDV-IFNGQPMSKLSSA 79 (233)
T ss_pred eEEEEeEEEEcCCCC----cceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEE-EECCEEcCcCCHH
Confidence 489999999997530 12468999 99999999999999999999999999999999999986 5543
Q ss_pred --------eEEEEcCCCCCCC-CCHHHHhccCCc---CCH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCCh
Q 000720 660 --------KKAYVPQSSWIQT-GTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1333)
Q Consensus 660 --------~iayv~Q~~~i~~-~Tv~enI~~g~~---~~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSG 723 (1333)
.++|++|++.++. .|++||+.++.. .+. ++..++++.+++. ...++++.+|||
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LSg 148 (233)
T PRK11629 80 AKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLE-----------HRANHRPSELSG 148 (233)
T ss_pred HHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-----------hhhhCChhhCCH
Confidence 4899999987665 599999987421 111 1223333433332 233467789999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhhcCCEEEEEeCCeEEEccC
Q 000720 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGK 802 (1333)
Q Consensus 724 GQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~ 802 (1333)
|||||++||||++.+|+++||||||++||+.+.+.+.+.+.+... +|+|+|++||+++++..+|++++|++|+|++.++
T Consensus 149 G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 149 GERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999998877764433333 4799999999999998888999999999998765
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=319.55 Aligned_cols=195 Identities=22% Similarity=0.348 Sum_probs=156.2
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++++|+... ...+.+++ ||++++||+++|+|+||||||||+++|+|+++|++|++ .++|
T Consensus 2 l~~~~v~~~~~~~~----~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 76 (218)
T cd03266 2 ITADALTKRFRDVK----KTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFA-TVDGFDVVKEPAEA 76 (218)
T ss_pred eEEEEEEEecCCCC----ccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceE-EECCEEcccCHHHH
Confidence 67899999997430 11268999 99999999999999999999999999999999999986 5654
Q ss_pred --eEEEEcCCCCCCC-CCHHHHhccCCcC---CH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHH
Q 000720 660 --KKAYVPQSSWIQT-GTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1333)
Q Consensus 660 --~iayv~Q~~~i~~-~Tv~enI~~g~~~---~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv 729 (1333)
.++|++|++.++. .|++||+.+.... .. ++..+.++..++. ...++++.+||||||||+
T Consensus 77 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv 145 (218)
T cd03266 77 RRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGME-----------ELLDRRVGGFSTGMRQKV 145 (218)
T ss_pred HhhEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-----------HHHhhhhhhcCHHHHHHH
Confidence 4799999997766 5999999764321 11 1222333333332 233467789999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEcc
Q 000720 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1333)
Q Consensus 730 ~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g 801 (1333)
+||||++.+|+++||||||++||+.+.+.+.+.+.+...+++|+|++||+++++.. ||++++|++|++++.|
T Consensus 146 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 146 AIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 99999999999999999999999999887776544333458999999999998764 9999999999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=323.82 Aligned_cols=201 Identities=27% Similarity=0.395 Sum_probs=161.1
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++++|+.. .+.+++ ||++++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 1 l~~~~l~~~~~~~-------~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 72 (242)
T cd03295 1 IEFENVTKRYGGG-------KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEI-FIDGEDIREQDPVE 72 (242)
T ss_pred CEEEEEEEEeCCc-------ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE-EECCeEcCcCChHH
Confidence 4688999999641 358999 99999999999999999999999999999999999986 5544
Q ss_pred ---eEEEEcCCCCCC-CCCHHHHhccCCcC---CH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHH
Q 000720 660 ---KKAYVPQSSWIQ-TGTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728 (1333)
Q Consensus 660 ---~iayv~Q~~~i~-~~Tv~enI~~g~~~---~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqR 728 (1333)
.++|++|++.++ ..|++||+.++..+ +. ++..+.++..++.. ....++++.+||||||||
T Consensus 73 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---------~~~~~~~~~~LS~G~~qr 143 (242)
T cd03295 73 LRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP---------AEFADRYPHELSGGQQQR 143 (242)
T ss_pred hhcceEEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc---------HHHHhcChhhCCHHHHHH
Confidence 479999999776 47999999875322 11 11222333333321 012346788999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhh-cCCEEEEEeCCeEEEccChHHH
Q 000720 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDL 806 (1333)
Q Consensus 729 v~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~~~~l 806 (1333)
++||||++.+|++++|||||++||+.+.+.+.+.+.+...+ ++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 144 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 223 (242)
T cd03295 144 VGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEI 223 (242)
T ss_pred HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999988777654443333 799999999999875 5999999999999999998887
Q ss_pred Hh
Q 000720 807 IA 808 (1333)
Q Consensus 807 ~~ 808 (1333)
.+
T Consensus 224 ~~ 225 (242)
T cd03295 224 LR 225 (242)
T ss_pred Hc
Confidence 64
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=325.18 Aligned_cols=204 Identities=25% Similarity=0.365 Sum_probs=165.1
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCc-----CCCCcEEEECC---
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG--- 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~-----~~~G~~i~~~g--- 659 (1333)
..++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+++ |++|++ .++|
T Consensus 12 ~~l~~~~l~~~~~~--------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i-~~~g~~~ 82 (260)
T PRK10744 12 SKIQVRNLNFYYGK--------FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEI-LLDGENI 82 (260)
T ss_pred ceEEEEEEEEEeCC--------eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEE-EECCEEc
Confidence 46899999999963 258999 99999999999999999999999999999986 478875 4433
Q ss_pred ------------eEEEEcCCCCCCCCCHHHHhccCCc----CCH----HHHHHHHHHcccchHHHhhcCCCccccCCCCC
Q 000720 660 ------------KKAYVPQSSWIQTGTIRENILFGKD----MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1333)
Q Consensus 660 ------------~iayv~Q~~~i~~~Tv~enI~~g~~----~~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~ 719 (1333)
+++|++|++.++..|++||+.++.. .+. ++.+++++..++..++. ...++++.
T Consensus 83 ~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~ 155 (260)
T PRK10744 83 LTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVK-------DKLHQSGY 155 (260)
T ss_pred cccccchHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-------HHHhcCCC
Confidence 4899999998877999999987632 121 12233344444322221 23456788
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeEE
Q 000720 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIE 798 (1333)
Q Consensus 720 ~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~ 798 (1333)
+||||||||++||||++.+|+++||||||++||+.+.+.+.+. ++...+++|+|++||+++.+. .||++++|++|+++
T Consensus 156 ~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 234 (260)
T PRK10744 156 SLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEEL-ITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELI 234 (260)
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHH-HHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999998877664 444456789999999999885 49999999999999
Q ss_pred EccChHHHHhh
Q 000720 799 QSGKYEDLIAD 809 (1333)
Q Consensus 799 ~~g~~~~l~~~ 809 (1333)
+.|+.+++.++
T Consensus 235 ~~g~~~~~~~~ 245 (260)
T PRK10744 235 EFGNTDTIFTK 245 (260)
T ss_pred EeCCHHHHHhC
Confidence 99999988753
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=327.44 Aligned_cols=201 Identities=24% Similarity=0.301 Sum_probs=162.3
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--------
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g-------- 659 (1333)
..++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 6 ~~l~~~~l~~~~~~--------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~i~~~~~ 76 (269)
T PRK11831 6 NLVDMRGVSFTRGN--------RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEI-LFDGENIPAMSR 76 (269)
T ss_pred ceEEEeCeEEEECC--------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEEccccCh
Confidence 35899999999953 358999 99999999999999999999999999999999999986 5543
Q ss_pred --------eEEEEcCCCCCCC-CCHHHHhccCCc----CCHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCCC
Q 000720 660 --------KKAYVPQSSWIQT-GTIRENILFGKD----MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1333)
Q Consensus 660 --------~iayv~Q~~~i~~-~Tv~enI~~g~~----~~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LS 722 (1333)
+++|++|++.++. .|++||+.++.. .+.. +..+.++..++. .....++.+||
T Consensus 77 ~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LS 145 (269)
T PRK11831 77 SRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLR-----------GAAKLMPSELS 145 (269)
T ss_pred hhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCCh-----------hhhhCChhhCC
Confidence 3799999998765 599999986421 1111 111223322221 12345678999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhhc-CCEEEEEeCCeEEEc
Q 000720 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQS 800 (1333)
Q Consensus 723 GGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~ 800 (1333)
||||||++||||++.+|+++||||||++||+.+.+.+.+.+.+...+ ++|+|++||+++.+.. ||++++|++|++++.
T Consensus 146 gGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~ 225 (269)
T PRK11831 146 GGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAH 225 (269)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999988777644333333 7899999999998865 999999999999999
Q ss_pred cChHHHHhh
Q 000720 801 GKYEDLIAD 809 (1333)
Q Consensus 801 g~~~~l~~~ 809 (1333)
|+++++.+.
T Consensus 226 g~~~~~~~~ 234 (269)
T PRK11831 226 GSAQALQAN 234 (269)
T ss_pred CCHHHHhcC
Confidence 999998763
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=321.72 Aligned_cols=198 Identities=28% Similarity=0.377 Sum_probs=160.9
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 2 l~~~~l~~~~~~--------~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 72 (240)
T PRK09493 2 IEFKNVSKHFGP--------TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDL-IVDGLKVNDPKVDE 72 (240)
T ss_pred EEEEeEEEEECC--------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEECCcCChhH
Confidence 678999999853 358999 99999999999999999999999999999999999986 5543
Q ss_pred -----eEEEEcCCCCCC-CCCHHHHhccCCc----CCHHH----HHHHHHHcccchHHHhhcCCCccccCCCCCCCChHH
Q 000720 660 -----KKAYVPQSSWIQ-TGTIRENILFGKD----MRQSF----YEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1333)
Q Consensus 660 -----~iayv~Q~~~i~-~~Tv~enI~~g~~----~~~~~----~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQ 725 (1333)
.++|++|++.++ ..|++||+.++.. .+... ..++++..++ ....+.++.+|||||
T Consensus 73 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LS~G~ 141 (240)
T PRK09493 73 RLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGL-----------AERAHHYPSELSGGQ 141 (240)
T ss_pred HHHhhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCC-----------hHHHhcChhhcCHHH
Confidence 379999998765 5799999987531 11111 1222222222 223346778999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChH
Q 000720 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYE 804 (1333)
Q Consensus 726 kqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~ 804 (1333)
|||++||||++.+|++++|||||++||+++.+.+.+.+.+...+++|+|++||+++++.. ||++++|++|++++.|+++
T Consensus 142 ~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 221 (240)
T PRK09493 142 QQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQ 221 (240)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHH
Confidence 999999999999999999999999999999888776443333458999999999999865 9999999999999999998
Q ss_pred HHHh
Q 000720 805 DLIA 808 (1333)
Q Consensus 805 ~l~~ 808 (1333)
++.+
T Consensus 222 ~~~~ 225 (240)
T PRK09493 222 VLIK 225 (240)
T ss_pred HHhc
Confidence 8865
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=329.83 Aligned_cols=203 Identities=26% Similarity=0.366 Sum_probs=165.7
Q ss_pred CccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCC---CcEEEECC----
Q 000720 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRIS---GAAIKVHG---- 659 (1333)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~---G~~i~~~g---- 659 (1333)
+..++++|+++.|+.. ..+.+++ ||++++||+++|+||||||||||+++|+|+++|.+ |++ .++|
T Consensus 3 ~~~l~i~~l~~~~~~~------~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i-~i~g~~~~ 75 (282)
T PRK13640 3 DNIVEFKHVSFTYPDS------KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKI-TVDGITLT 75 (282)
T ss_pred CceEEEEEEEEEcCCC------CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEE-EECCEECC
Confidence 3468999999999643 2458999 99999999999999999999999999999999987 665 5544
Q ss_pred ---------eEEEEcCCCC--CCCCCHHHHhccCCcC---CHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCC
Q 000720 660 ---------KKAYVPQSSW--IQTGTIRENILFGKDM---RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1333)
Q Consensus 660 ---------~iayv~Q~~~--i~~~Tv~enI~~g~~~---~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~L 721 (1333)
+++|++|+|. +++.|++||+.++... ..+ +..+.++.+++.+ ..+..+.+|
T Consensus 76 ~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-----------~~~~~~~~L 144 (282)
T PRK13640 76 AKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLD-----------YIDSEPANL 144 (282)
T ss_pred cCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChh-----------HhcCCcccC
Confidence 4799999984 5678999999886322 121 2233344444322 234677899
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhhcCCEEEEEeCCeEEEc
Q 000720 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDAADLVLVMKDGKIEQS 800 (1333)
Q Consensus 722 SGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~ 800 (1333)
|||||||++||||++++|+++||||||++||+.+.+.+.+.+.+...+ |+|||++||+++.+..||++++|++|++++.
T Consensus 145 S~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~ 224 (282)
T PRK13640 145 SGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQ 224 (282)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999988887654433333 7899999999999878999999999999999
Q ss_pred cChHHHHh
Q 000720 801 GKYEDLIA 808 (1333)
Q Consensus 801 g~~~~l~~ 808 (1333)
|+++++..
T Consensus 225 g~~~~~~~ 232 (282)
T PRK13640 225 GSPVEIFS 232 (282)
T ss_pred CCHHHHhc
Confidence 99988865
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=339.34 Aligned_cols=192 Identities=30% Similarity=0.457 Sum_probs=157.6
Q ss_pred cccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------------------eEEEEcCCC
Q 000720 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------------------KKAYVPQSS 668 (1333)
Q Consensus 611 ~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------------------~iayv~Q~~ 668 (1333)
...++| ||++++||+++|+|+||||||||+++|+|+++|++|++ .++| +++|++|++
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I-~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~ 115 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSV-LVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKF 115 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEE-EECCEecccccccCCHHHHHHHhcCCEEEEECCC
Confidence 456899 99999999999999999999999999999999999986 5654 489999999
Q ss_pred CCCC-CCHHHHhccCCcC---CH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCC
Q 000720 669 WIQT-GTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSD 740 (1333)
Q Consensus 669 ~i~~-~Tv~enI~~g~~~---~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ 740 (1333)
.+++ .|++||+.++... .+ .+..+.++..++.. ..+..+.+||||||||++|||||+++|+
T Consensus 116 ~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~-----------~~~~~~~~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 116 ALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQ-----------WADKKPGELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred cCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-----------hhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 8775 7999999987432 11 12233444444322 2345678999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhh-hcCCEEEEEeCCeEEEccChHHHHhhcchHH
Q 000720 741 VYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDLIADQNSEL 814 (1333)
Q Consensus 741 illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l-~~aD~i~vl~~G~i~~~g~~~~l~~~~~~~~ 814 (1333)
|+||||||+|||+.+++.+.+.+.+...+ ++|+|++|||++++ +.||+|++|++|++++.|+++++..++...+
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~~~~ 260 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDY 260 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcchHH
Confidence 99999999999999998888766544443 79999999999987 5599999999999999999999976443333
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=316.48 Aligned_cols=191 Identities=26% Similarity=0.412 Sum_probs=154.4
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------e
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------K 660 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------~ 660 (1333)
++++|+++.|+. .+.+++ ||++++||+++|+||||||||||+++|+|+.+|++|++ .++| .
T Consensus 1 l~~~~l~~~~~~--------~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 71 (210)
T cd03269 1 LEVENVTKRFGR--------VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEV-LFDGKPLDIAARNR 71 (210)
T ss_pred CEEEEEEEEECC--------EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCCchhHHHHcc
Confidence 468899999853 358999 99999999999999999999999999999999999986 6665 4
Q ss_pred EEEEcCCCCCCC-CCHHHHhccCCcC---CH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHH
Q 000720 661 KAYVPQSSWIQT-GTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732 (1333)
Q Consensus 661 iayv~Q~~~i~~-~Tv~enI~~g~~~---~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LA 732 (1333)
++|++|++.++. .|++||+.+.... .. ++..+.++..++. ...++++.+||||||||++||
T Consensus 72 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrl~la 140 (210)
T cd03269 72 IGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELS-----------EYANKRVEELSKGNQQKVQFI 140 (210)
T ss_pred EEEeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCh-----------HHHhCcHhhCCHHHHHHHHHH
Confidence 899999987665 6999999874321 11 1122233333222 233456789999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEcc
Q 000720 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1333)
Q Consensus 733 RAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g 801 (1333)
||++.+|+++||||||++||+.+.+.+.+.+.+...+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 141 ~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 141 AAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999888877544433457899999999998854 9999999999998654
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=333.39 Aligned_cols=218 Identities=21% Similarity=0.322 Sum_probs=169.1
Q ss_pred CccEEEeeeEEEcCCcccc-----cCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--
Q 000720 588 DVAIDIEAGEYAWDAREEN-----FKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-- 659 (1333)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~-----~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g-- 659 (1333)
+..++++|.+++|+.+... .......++| ||+|++||+++|+|+||||||||+++|+|+++|++|++ .++|
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I-~~~G~~ 84 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEV-AWLGKD 84 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEE-EECCEE
Confidence 3468999999999642100 0012457899 99999999999999999999999999999999999986 5543
Q ss_pred --------------eEEEEcCCCC--C-CCCCHHHHhccCC-----cCCHH----HHHHHHHHcccchHHHhhcCCCccc
Q 000720 660 --------------KKAYVPQSSW--I-QTGTIRENILFGK-----DMRQS----FYEEVLEGCALNQDIEMWADGDLSV 713 (1333)
Q Consensus 660 --------------~iayv~Q~~~--i-~~~Tv~enI~~g~-----~~~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ 713 (1333)
+++||+|+|. + +..||.|||.++. ...++ +.++.++..++.+ ..
T Consensus 85 i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~----------~~ 154 (331)
T PRK15079 85 LLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLP----------NL 154 (331)
T ss_pred CCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCh----------HH
Confidence 4899999983 4 4679999997532 12221 1223334333321 12
Q ss_pred cCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhhc-CCEEEE
Q 000720 714 VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLV 791 (1333)
Q Consensus 714 ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~~-aD~i~v 791 (1333)
.+..+.+|||||||||+||||++.+|+++|+||||+|||+.++.++.+.+.+... .+.|+|+||||++.+.. ||+|++
T Consensus 155 ~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~v 234 (331)
T PRK15079 155 INRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLV 234 (331)
T ss_pred hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 3567889999999999999999999999999999999999999888875443333 37899999999999865 999999
Q ss_pred EeCCeEEEccChHHHHhhcchHHHH
Q 000720 792 MKDGKIEQSGKYEDLIADQNSELVR 816 (1333)
Q Consensus 792 l~~G~i~~~g~~~~l~~~~~~~~~~ 816 (1333)
|++|+|++.|+.+++.++....+.+
T Consensus 235 l~~G~ive~g~~~~i~~~~~~py~~ 259 (331)
T PRK15079 235 MYLGHAVELGTYDEVYHNPLHPYTK 259 (331)
T ss_pred EECCEEEEEcCHHHHHcCCCCHHHH
Confidence 9999999999999998644434433
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=316.88 Aligned_cols=189 Identities=24% Similarity=0.374 Sum_probs=153.6
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
|+++|+++.|+. .+.+++ ||++++| +++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 1 i~~~~~~~~~~~--------~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 70 (211)
T cd03264 1 LQLENLTKRYGK--------KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTI-RIDGQDVLKQPQKL 70 (211)
T ss_pred CEEEEEEEEECC--------EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEE-EECCCccccchHHH
Confidence 468999999953 268999 9999999 999999999999999999999999999986 6654
Q ss_pred --eEEEEcCCCCCCC-CCHHHHhccCCc---CCH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHH
Q 000720 660 --KKAYVPQSSWIQT-GTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1333)
Q Consensus 660 --~iayv~Q~~~i~~-~Tv~enI~~g~~---~~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv 729 (1333)
.++|++|++.++. .|++||+.+... .+. +..++.++.+++.+. ....+.+||||||||+
T Consensus 71 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv 139 (211)
T cd03264 71 RRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDR-----------AKKKIGSLSGGMRRRV 139 (211)
T ss_pred HhheEEecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHH-----------HhCchhhCCHHHHHHH
Confidence 4799999998765 599999986422 111 122333444443221 2356789999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeEEEcc
Q 000720 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSG 801 (1333)
Q Consensus 730 ~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g 801 (1333)
+||||++++|+++||||||++||+.+.+.+.+. ++...+++|+|++||+++.+. .||++++|++|++++.|
T Consensus 140 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 140 GIAQALVGDPSILIVDEPTAGLDPEERIRFRNL-LSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999999998887764 455555699999999999986 49999999999998764
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=325.43 Aligned_cols=205 Identities=22% Similarity=0.356 Sum_probs=165.6
Q ss_pred CCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcC-----CCCcEEEECC-
Q 000720 587 SDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG- 659 (1333)
Q Consensus 587 ~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~-----~~G~~i~~~g- 659 (1333)
++..|+++|++++|+. .+.++| ||+|++||+++|+||||||||||+++|+|+.+| ++|++ .++|
T Consensus 16 ~~~~l~~~nl~~~~~~--------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I-~~~g~ 86 (267)
T PRK14235 16 TEIKMRARDVSVFYGE--------KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKI-TLDGE 86 (267)
T ss_pred CCceEEEEeEEEEECC--------EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEE-EECCE
Confidence 3457999999999963 358999 999999999999999999999999999999875 78876 5443
Q ss_pred --------------eEEEEcCCCCCCCCCHHHHhccCCcC-----CH----HHHHHHHHHcccchHHHhhcCCCccccCC
Q 000720 660 --------------KKAYVPQSSWIQTGTIRENILFGKDM-----RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGE 716 (1333)
Q Consensus 660 --------------~iayv~Q~~~i~~~Tv~enI~~g~~~-----~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~ 716 (1333)
.++|++|++.+++.|++||+.++... .. ++.++.++.+++.+++. +..++
T Consensus 87 ~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~ 159 (267)
T PRK14235 87 DIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHE 159 (267)
T ss_pred ECcccccchHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhC
Confidence 37999999988778999999875321 11 12233344444432211 12346
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCC
Q 000720 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDG 795 (1333)
Q Consensus 717 ~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G 795 (1333)
.+.+||||||||++||||++.+|+++||||||++||+...+.+.+ +++.+.+++|+|++||+++.+.. ||++++|++|
T Consensus 160 ~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G 238 (267)
T PRK14235 160 PGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEE-LIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLG 238 (267)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHH-HHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECC
Confidence 788999999999999999999999999999999999999887765 45555557899999999999854 9999999999
Q ss_pred eEEEccChHHHHh
Q 000720 796 KIEQSGKYEDLIA 808 (1333)
Q Consensus 796 ~i~~~g~~~~l~~ 808 (1333)
++++.|+.+++..
T Consensus 239 ~i~~~g~~~~~~~ 251 (267)
T PRK14235 239 NLVEVGDTEKMFT 251 (267)
T ss_pred EEEEeCCHHHHHh
Confidence 9999999988865
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=329.50 Aligned_cols=205 Identities=26% Similarity=0.372 Sum_probs=163.0
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|++++|+.... ...+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 2 ~l~~~~l~~~~~~~~~---~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i-~~~g~~i~~~~~~ 77 (280)
T PRK13649 2 GINLQNVSYTYQAGTP---FEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSV-RVDDTLITSTSKN 77 (280)
T ss_pred eEEEEEEEEEcCCCCc---cccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEEccccccc
Confidence 3789999999974300 01368999 99999999999999999999999999999999999986 5544
Q ss_pred --------eEEEEcCCC--CCCCCCHHHHhccCCc---CCHHH----HHHHHHHcccchHHHhhcCCCccccCCCCCCCC
Q 000720 660 --------KKAYVPQSS--WIQTGTIRENILFGKD---MRQSF----YEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1333)
Q Consensus 660 --------~iayv~Q~~--~i~~~Tv~enI~~g~~---~~~~~----~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LS 722 (1333)
.++|++|++ .+++.|++||+.++.. .+.+. .+++++..++.. .....++.+||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS 147 (280)
T PRK13649 78 KDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISE----------SLFEKNPFELS 147 (280)
T ss_pred cCHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCCcccCC
Confidence 379999997 5677899999987532 11211 122223322221 12346788999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeEEEcc
Q 000720 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSG 801 (1333)
Q Consensus 723 GGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g 801 (1333)
||||||++||||++.+|+++||||||++||+.+.+.+.+.+.+...+++|||++||+++.+. .||++++|++|++++.|
T Consensus 148 gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 227 (280)
T PRK13649 148 GGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSG 227 (280)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999988777654433345799999999999885 49999999999999999
Q ss_pred ChHHHHh
Q 000720 802 KYEDLIA 808 (1333)
Q Consensus 802 ~~~~l~~ 808 (1333)
+++++..
T Consensus 228 ~~~~~~~ 234 (280)
T PRK13649 228 KPKDIFQ 234 (280)
T ss_pred CHHHHhc
Confidence 9988765
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=323.41 Aligned_cols=199 Identities=28% Similarity=0.365 Sum_probs=160.9
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 3 ~l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~ 73 (250)
T PRK11264 3 AIEVKNLVKKFHG--------QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTI-RVGDITIDTARSL 73 (250)
T ss_pred cEEEeceEEEECC--------eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEE-EECCEEccccccc
Confidence 3789999999963 258999 99999999999999999999999999999999999986 4332
Q ss_pred ------------eEEEEcCCCCCC-CCCHHHHhccCCc----CCHH----HHHHHHHHcccchHHHhhcCCCccccCCCC
Q 000720 660 ------------KKAYVPQSSWIQ-TGTIRENILFGKD----MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1333)
Q Consensus 660 ------------~iayv~Q~~~i~-~~Tv~enI~~g~~----~~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g 718 (1333)
.++|++|++.++ ..|++||+.++.. .... +..+.++..++. ...+.++
T Consensus 74 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~ 142 (250)
T PRK11264 74 SQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLA-----------GKETSYP 142 (250)
T ss_pred cchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-----------chhhCCh
Confidence 479999998766 4799999986421 1111 122222222221 2234678
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeE
Q 000720 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKI 797 (1333)
Q Consensus 719 ~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i 797 (1333)
.+||||||||++||||++.+|+++||||||++||+.+.+.+.+.+.+...+++|+|++||+++.+.. ||++++|++|++
T Consensus 143 ~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i 222 (250)
T PRK11264 143 RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRI 222 (250)
T ss_pred hhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 8999999999999999999999999999999999999887776443333458999999999999865 999999999999
Q ss_pred EEccChHHHHh
Q 000720 798 EQSGKYEDLIA 808 (1333)
Q Consensus 798 ~~~g~~~~l~~ 808 (1333)
++.|+.+++.+
T Consensus 223 ~~~~~~~~~~~ 233 (250)
T PRK11264 223 VEQGPAKALFA 233 (250)
T ss_pred EEeCCHHHHhc
Confidence 99999988865
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=323.97 Aligned_cols=202 Identities=25% Similarity=0.359 Sum_probs=162.8
Q ss_pred CccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC-------
Q 000720 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (1333)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g------- 659 (1333)
++.++++|+++.|+. ...+++ ||++++||+++|+|+||||||||+++|+|+++|++|++ .++|
T Consensus 3 ~~~l~~~~l~~~~~~--------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~~~~~~ 73 (257)
T PRK10619 3 ENKLNVIDLHKRYGE--------HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSI-VVNGQTINLVR 73 (257)
T ss_pred CccEEEeeeEEEECC--------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE-EECCEEccccc
Confidence 346999999999963 358999 99999999999999999999999999999999999976 4443
Q ss_pred -------------------eEEEEcCCCCCCC-CCHHHHhccCC----cCCH----HHHHHHHHHcccchHHHhhcCCCc
Q 000720 660 -------------------KKAYVPQSSWIQT-GTIRENILFGK----DMRQ----SFYEEVLEGCALNQDIEMWADGDL 711 (1333)
Q Consensus 660 -------------------~iayv~Q~~~i~~-~Tv~enI~~g~----~~~~----~~~~~v~~~~~l~~d~~~~~~g~~ 711 (1333)
+++|+||++.++. .|++||+.++. ..+. ++..+.++..++...
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~--------- 144 (257)
T PRK10619 74 DKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDER--------- 144 (257)
T ss_pred ccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChh---------
Confidence 4799999998765 69999997642 1111 112222332222211
Q ss_pred cccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEE
Q 000720 712 SVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVL 790 (1333)
Q Consensus 712 t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~ 790 (1333)
..+..+.+||||||||++||||++++|+++||||||++||+.+.+.+.+.+.+...+++|+|++||+++++.. ||+|+
T Consensus 145 -~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~ 223 (257)
T PRK10619 145 -AQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVI 223 (257)
T ss_pred -hhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEE
Confidence 0145678999999999999999999999999999999999999888876443333458999999999999875 99999
Q ss_pred EEeCCeEEEccChHHHHh
Q 000720 791 VMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 791 vl~~G~i~~~g~~~~l~~ 808 (1333)
+|++|++++.|+++++.+
T Consensus 224 ~l~~G~i~~~~~~~~~~~ 241 (257)
T PRK10619 224 FLHQGKIEEEGAPEQLFG 241 (257)
T ss_pred EEECCEEEEeCCHHHhhh
Confidence 999999999999988765
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=324.16 Aligned_cols=204 Identities=24% Similarity=0.351 Sum_probs=164.0
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcC-----CCCcEEEECC---
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG--- 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~-----~~G~~i~~~g--- 659 (1333)
..++++|+++.|+. .+.+++ ||++++||+++|+|+||||||||+++|+|+.+| ++|++ .++|
T Consensus 11 ~~l~~~~l~~~~~~--------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i-~~~g~~i 81 (258)
T PRK14268 11 PQIKVENLNLWYGE--------KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKV-SIEGEDI 81 (258)
T ss_pred eeEEEeeeEEEeCC--------eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEE-EECCEEc
Confidence 36999999999853 358999 999999999999999999999999999999875 78975 4432
Q ss_pred ------------eEEEEcCCCCCCCCCHHHHhccCCc---CCHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCC
Q 000720 660 ------------KKAYVPQSSWIQTGTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1333)
Q Consensus 660 ------------~iayv~Q~~~i~~~Tv~enI~~g~~---~~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~ 720 (1333)
.++|++|++.+++.|++||+.++.. .... +.+++++.+++..++ ....++++.+
T Consensus 82 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~ 154 (258)
T PRK14268 82 YEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDET-------SDRLKSPALS 154 (258)
T ss_pred ccccchHHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcch-------hhhhcCChhh
Confidence 3799999998877999999987532 1111 122233333332111 1233567889
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeEEE
Q 000720 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQ 799 (1333)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~ 799 (1333)
||||||||++||||++.+|+++||||||++||+.++..+.+ +++.+.+++|+|++||+++.+. .||+|++|++|++++
T Consensus 155 LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 233 (258)
T PRK14268 155 LSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIED-LIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIE 233 (258)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHH-HHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999887765 4444455799999999999885 499999999999999
Q ss_pred ccChHHHHhh
Q 000720 800 SGKYEDLIAD 809 (1333)
Q Consensus 800 ~g~~~~l~~~ 809 (1333)
.|+++++.++
T Consensus 234 ~~~~~~~~~~ 243 (258)
T PRK14268 234 FGQTRQIFHN 243 (258)
T ss_pred eCCHHHHhcC
Confidence 9999988653
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=323.81 Aligned_cols=202 Identities=22% Similarity=0.362 Sum_probs=162.7
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCc--C---CCCcEEEECC----
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP--R---ISGAAIKVHG---- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~--~---~~G~~i~~~g---- 659 (1333)
.++++|+++.|+. .+.+++ ||+|++||+++|+||||||||||+++|+|+++ | ++|++ .++|
T Consensus 12 ~l~i~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i-~~~g~~~~ 82 (259)
T PRK14274 12 VYQINGMNLWYGQ--------HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEM-NYNGSNIL 82 (259)
T ss_pred eEEEeeEEEEECC--------eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEE-EECCEEcc
Confidence 5899999999963 358999 99999999999999999999999999999987 3 57875 4433
Q ss_pred -----------eEEEEcCCCCCCCCCHHHHhccCCcC----CHHH----HHHHHHHcccchHHHhhcCCCccccCCCCCC
Q 000720 660 -----------KKAYVPQSSWIQTGTIRENILFGKDM----RQSF----YEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1333)
Q Consensus 660 -----------~iayv~Q~~~i~~~Tv~enI~~g~~~----~~~~----~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~ 720 (1333)
.++|++|++.+++.|++||+.++... .+.. .+++++..++.+.+ .+..+.++.+
T Consensus 83 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~l~~~~~~ 155 (259)
T PRK14274 83 KGKVDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEV-------KDRLHTQALS 155 (259)
T ss_pred ccccCHHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------hhhhhCCccc
Confidence 37999999988878999999876422 1111 12223333332211 1234567889
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeEEE
Q 000720 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQ 799 (1333)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~ 799 (1333)
||||||||++||||++++|+++||||||++||+++...+.+ +++...+++|+|++||+++.+. .||++++|++|++++
T Consensus 156 LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~ 234 (259)
T PRK14274 156 LSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEE-LILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVE 234 (259)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999877765 5555556789999999999976 499999999999999
Q ss_pred ccChHHHHh
Q 000720 800 SGKYEDLIA 808 (1333)
Q Consensus 800 ~g~~~~l~~ 808 (1333)
.|+++++.+
T Consensus 235 ~g~~~~~~~ 243 (259)
T PRK14274 235 CNDTNKMFS 243 (259)
T ss_pred ECCHHHHhh
Confidence 999999865
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=323.21 Aligned_cols=202 Identities=24% Similarity=0.352 Sum_probs=162.9
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCc-----CCCCcEEEECC----
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG---- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~-----~~~G~~i~~~g---- 659 (1333)
.++++|++|+|+. .+.+++ ||++++||+++|+|+||||||||+++|+|+++ |++|++ .++|
T Consensus 4 ~l~~~~l~~~~~~--------~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v-~i~g~~~~ 74 (251)
T PRK14251 4 IISAKDVHLSYGN--------YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEI-KFEGQNIY 74 (251)
T ss_pred eEEEEeeEEEECC--------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEE-EECCEEcc
Confidence 4889999999963 358999 99999999999999999999999999999986 478875 4433
Q ss_pred -----------eEEEEcCCCCCCCCCHHHHhccCCcC----CH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCC
Q 000720 660 -----------KKAYVPQSSWIQTGTIRENILFGKDM----RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1333)
Q Consensus 660 -----------~iayv~Q~~~i~~~Tv~enI~~g~~~----~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~ 720 (1333)
.++|++|++.+++.|++||+.++... ++ .+.+++++..++..+. ....+.++.+
T Consensus 75 ~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~ 147 (251)
T PRK14251 75 GSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET-------KDNLDRNAQA 147 (251)
T ss_pred cccchHHHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch-------HHHhccChhh
Confidence 37999999988889999999875321 11 1223333433332111 1123467889
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEE
Q 000720 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1333)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~ 799 (1333)
||||||||++||||++++|+++||||||++||+.+.+.+.+. ++...+++|+|++||+++++.. ||+|++|++|++++
T Consensus 148 LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~-l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~ 226 (251)
T PRK14251 148 FSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEET-LMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIE 226 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHH-HHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEE
Confidence 999999999999999999999999999999999998877654 4444567899999999999765 99999999999999
Q ss_pred ccChHHHHh
Q 000720 800 SGKYEDLIA 808 (1333)
Q Consensus 800 ~g~~~~l~~ 808 (1333)
.|+.+++..
T Consensus 227 ~~~~~~~~~ 235 (251)
T PRK14251 227 AGPTEEMFI 235 (251)
T ss_pred eCCHHHHHh
Confidence 999988865
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-34 Score=324.17 Aligned_cols=204 Identities=23% Similarity=0.351 Sum_probs=164.3
Q ss_pred CccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCc-----CCCCcEEEECC--
Q 000720 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG-- 659 (1333)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~-----~~~G~~i~~~g-- 659 (1333)
+..++++|++++|+. ...+++ ||+|++||+++|+||||||||||+++|+|+++ |++|++ .++|
T Consensus 11 ~~~l~i~nl~~~~~~--------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v-~~~g~~ 81 (269)
T PRK14259 11 NIIISLQNVTISYGT--------FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRV-LFDGTD 81 (269)
T ss_pred CceEEEEeEEEEECC--------EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEE-EECCEE
Confidence 346999999999964 358999 99999999999999999999999999999987 588976 4443
Q ss_pred -------------eEEEEcCCCCCCCCCHHHHhccCCcCC---H---HHHHHHHHHcccchHHHhhcCCCccccCCCCCC
Q 000720 660 -------------KKAYVPQSSWIQTGTIRENILFGKDMR---Q---SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1333)
Q Consensus 660 -------------~iayv~Q~~~i~~~Tv~enI~~g~~~~---~---~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~ 720 (1333)
+++|++|++.++..|++||+.++.... . ++.+++++.+++...+ .+..+.++.+
T Consensus 82 i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~ 154 (269)
T PRK14259 82 LYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDEC-------KDKLNESGYS 154 (269)
T ss_pred cccccCCHHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchh-------hhhhCCCccc
Confidence 479999999887789999999864321 1 1122233333322111 1234567889
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeC-----
Q 000720 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKD----- 794 (1333)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~----- 794 (1333)
||||||||++||||++.+|+++||||||++||+.+.+++.+ +++...+++|+|++||+++.+. .||++++|++
T Consensus 155 LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~-~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~ 233 (269)
T PRK14259 155 LSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEE-TMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEG 233 (269)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEecccccc
Confidence 99999999999999999999999999999999999888766 4455556789999999999885 4999999996
Q ss_pred ------CeEEEccChHHHHh
Q 000720 795 ------GKIEQSGKYEDLIA 808 (1333)
Q Consensus 795 ------G~i~~~g~~~~l~~ 808 (1333)
|++++.|+++++.+
T Consensus 234 ~~~g~~g~~~~~~~~~~~~~ 253 (269)
T PRK14259 234 GSGGKVGYLVEFNETKKIFN 253 (269)
T ss_pred ccccccceEEEeCCHHHHHh
Confidence 67899999999875
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=317.39 Aligned_cols=192 Identities=30% Similarity=0.350 Sum_probs=153.4
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++++|+... ...+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 2 l~~~~v~~~~~~~~----~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~~~~~~~~~ 76 (221)
T TIGR02211 2 LKCENLGKRYQEGK----LDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEV-LFNGQSLSKLSSNE 76 (221)
T ss_pred EEEEeeeEEccCCC----cceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEEhhhcCHhH
Confidence 67899999996420 12468999 99999999999999999999999999999999999986 5443
Q ss_pred -------eEEEEcCCCCCC-CCCHHHHhccCCc---CCHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChH
Q 000720 660 -------KKAYVPQSSWIQ-TGTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1333)
Q Consensus 660 -------~iayv~Q~~~i~-~~Tv~enI~~g~~---~~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGG 724 (1333)
.++|++|++.++ +.|++||+.++.. .+.. +..+.++.+++. ...+..+.+||||
T Consensus 77 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G 145 (221)
T TIGR02211 77 RAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLE-----------HRINHRPSELSGG 145 (221)
T ss_pred HHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-----------hhhhCChhhCCHH
Confidence 489999998776 5699999987422 2211 122233333222 2334667899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhhcCCEEEEEeCCeEE
Q 000720 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLVMKDGKIE 798 (1333)
Q Consensus 725 QkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~ 798 (1333)
||||++||||++.+|+++||||||++||+++.+.+.+.+.+... .++|+|++||+++++..+|++++|++|+++
T Consensus 146 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 146 ERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999999998887764433333 378999999999998889999999999975
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-34 Score=321.44 Aligned_cols=202 Identities=23% Similarity=0.343 Sum_probs=164.9
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcC-----CCCcEEEECC----
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG---- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~-----~~G~~i~~~g---- 659 (1333)
-++++|+++.|+. .+.+++ ||++++||+++|+|+||||||||+++|+|+.+| ++|++ .++|
T Consensus 4 ~l~~~~l~~~~~~--------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i-~~~g~~i~ 74 (251)
T PRK14270 4 KMESKNLNLWYGE--------KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEV-LLDGKNIY 74 (251)
T ss_pred EEEEEEeEEEECC--------eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEE-EECCEecc
Confidence 4789999999963 358999 999999999999999999999999999999875 78875 4433
Q ss_pred -----------eEEEEcCCCCCCCCCHHHHhccCCcC----CH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCC
Q 000720 660 -----------KKAYVPQSSWIQTGTIRENILFGKDM----RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1333)
Q Consensus 660 -----------~iayv~Q~~~i~~~Tv~enI~~g~~~----~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~ 720 (1333)
.++|++|++.++..|++||+.++... .. ++..++++.+++.+++. ...+.++.+
T Consensus 75 ~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~ 147 (251)
T PRK14270 75 DKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVK-------DDLKKSALK 147 (251)
T ss_pred cccccHHHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhh-------hHhhCCccc
Confidence 37999999988889999999876321 11 12234455554432222 123467889
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEE
Q 000720 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1333)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~ 799 (1333)
||||||||++||||++.+|+++||||||++||+.+...+.+ +++...+++|+|++||+++.+.. ||++++|++|++++
T Consensus 148 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~-~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~ 226 (251)
T PRK14270 148 LSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIED-LMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIE 226 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEE
Confidence 99999999999999999999999999999999999888766 45555557899999999998765 99999999999999
Q ss_pred ccChHHHHh
Q 000720 800 SGKYEDLIA 808 (1333)
Q Consensus 800 ~g~~~~l~~ 808 (1333)
.|+.+++..
T Consensus 227 ~~~~~~~~~ 235 (251)
T PRK14270 227 FNKTEKIFL 235 (251)
T ss_pred eCCHHHHhc
Confidence 999998865
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=322.35 Aligned_cols=203 Identities=23% Similarity=0.371 Sum_probs=162.7
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCc--C---CCCcEEEECC----
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP--R---ISGAAIKVHG---- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~--~---~~G~~i~~~g---- 659 (1333)
.++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+.+ | ++|++ .++|
T Consensus 5 ~l~~~~l~~~~~~--------~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i-~~~g~~~~ 75 (252)
T PRK14239 5 ILQVSDLSVYYNK--------KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSI-VYNGHNIY 75 (252)
T ss_pred eEEEEeeEEEECC--------eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceE-EECCEECc
Confidence 5899999999963 358999 99999999999999999999999999999853 5 47875 4443
Q ss_pred -----------eEEEEcCCCCCCCCCHHHHhccCCcC----CHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCC
Q 000720 660 -----------KKAYVPQSSWIQTGTIRENILFGKDM----RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1333)
Q Consensus 660 -----------~iayv~Q~~~i~~~Tv~enI~~g~~~----~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~ 720 (1333)
.++|++|++.+++.|++||+.++... ++. ...+.++.+++...+. +..++++.+
T Consensus 76 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~ 148 (252)
T PRK14239 76 SPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK-------DRLHDSALG 148 (252)
T ss_pred CcccchHhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHH-------HHHhcCccc
Confidence 48999999998889999999875321 111 1122333333322111 234567889
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeEEE
Q 000720 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQ 799 (1333)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~ 799 (1333)
||||||||++||||++.+|+++||||||++||+.+.+.+.+ +++...+++|+|++||+++.+. .||+|++|++|++++
T Consensus 149 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T PRK14239 149 LSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEE-TLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIE 227 (252)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHH-HHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999888876 4444455789999999999875 599999999999999
Q ss_pred ccChHHHHhh
Q 000720 800 SGKYEDLIAD 809 (1333)
Q Consensus 800 ~g~~~~l~~~ 809 (1333)
.|+.+++.++
T Consensus 228 ~g~~~~~~~~ 237 (252)
T PRK14239 228 YNDTKQMFMN 237 (252)
T ss_pred eCCHHHHHhC
Confidence 9999998753
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=329.23 Aligned_cols=204 Identities=25% Similarity=0.336 Sum_probs=161.9
Q ss_pred ccEEEeeeEEEcCCcccccCC--CcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC------
Q 000720 589 VAIDIEAGEYAWDAREENFKK--PTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------ 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~--~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g------ 659 (1333)
..|+++|++++|+.. . ..+++++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 5 ~~l~i~nl~~~~~~~-----~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~i~~~ 78 (289)
T PRK13645 5 KDIILDNVSYTYAKK-----TPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQT-IVGDYAIPAN 78 (289)
T ss_pred ceEEEEEEEEEeCCC-----CccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE-EECCEEcccc
Confidence 458999999999643 1 1358999 99999999999999999999999999999999999986 4433
Q ss_pred ------------eEEEEcCCCC--CCCCCHHHHhccCCcC---CHHH-H---HHHHHHcccchHHHhhcCCCccccCCCC
Q 000720 660 ------------KKAYVPQSSW--IQTGTIRENILFGKDM---RQSF-Y---EEVLEGCALNQDIEMWADGDLSVVGERG 718 (1333)
Q Consensus 660 ------------~iayv~Q~~~--i~~~Tv~enI~~g~~~---~~~~-~---~~v~~~~~l~~d~~~~~~g~~t~ig~~g 718 (1333)
.++|++|+|. +++.|++||+.++... .... . .+.++..++. ....++.+
T Consensus 79 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~----------~~~~~~~~ 148 (289)
T PRK13645 79 LKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLP----------EDYVKRSP 148 (289)
T ss_pred ccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCC----------hhHhcCCh
Confidence 4799999984 5567999999886421 1111 1 1122222221 11234678
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhh-cCCEEEEEeCCe
Q 000720 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGK 796 (1333)
Q Consensus 719 ~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~-~aD~i~vl~~G~ 796 (1333)
.+||||||||++||||++.+|+++||||||++||+.+++.+.+.+.+... .++|||++||+++.+. .||++++|++|+
T Consensus 149 ~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~ 228 (289)
T PRK13645 149 FELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGK 228 (289)
T ss_pred hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 89999999999999999999999999999999999998877664433333 3789999999999875 599999999999
Q ss_pred EEEccChHHHHh
Q 000720 797 IEQSGKYEDLIA 808 (1333)
Q Consensus 797 i~~~g~~~~l~~ 808 (1333)
+++.|+++++.+
T Consensus 229 i~~~g~~~~~~~ 240 (289)
T PRK13645 229 VISIGSPFEIFS 240 (289)
T ss_pred EEEeCCHHHHhc
Confidence 999999888764
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=323.20 Aligned_cols=198 Identities=24% Similarity=0.358 Sum_probs=161.3
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++++|++ .+.+++ ||++++||+++|+|+||||||||+++|+|+++|++|++ .++|
T Consensus 3 l~~~~l~~~~~~--------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 73 (255)
T PRK11231 3 LRTENLTVGYGT--------KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTV-FLGDKPISMLSSRQ 73 (255)
T ss_pred EEEEeEEEEECC--------EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEE-EECCEEhHHCCHHH
Confidence 789999999963 368999 99999999999999999999999999999999999986 6554
Q ss_pred ---eEEEEcCCCCCCC-CCHHHHhccCCc-C-------CH---HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChH
Q 000720 660 ---KKAYVPQSSWIQT-GTIRENILFGKD-M-------RQ---SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1333)
Q Consensus 660 ---~iayv~Q~~~i~~-~Tv~enI~~g~~-~-------~~---~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGG 724 (1333)
.++|++|++.++. .|+.||+.++.. . .+ ++.++.++.+++. ...+.++.+||||
T Consensus 74 ~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G 142 (255)
T PRK11231 74 LARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRIN-----------HLADRRLTDLSGG 142 (255)
T ss_pred HhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCH-----------HHHcCCcccCCHH
Confidence 3799999987665 499999988631 1 11 1222233333332 1234678899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeEEEccCh
Q 000720 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKY 803 (1333)
Q Consensus 725 QkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~~ 803 (1333)
||||++||||++.+|+++||||||++||+.+.+.+.+.+.+...+++|+|++||+++.+. .||++++|++|+++..|++
T Consensus 143 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~ 222 (255)
T PRK11231 143 QRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTP 222 (255)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCH
Confidence 999999999999999999999999999999988777654333345899999999999876 5999999999999999999
Q ss_pred HHHHh
Q 000720 804 EDLIA 808 (1333)
Q Consensus 804 ~~l~~ 808 (1333)
+++..
T Consensus 223 ~~~~~ 227 (255)
T PRK11231 223 EEVMT 227 (255)
T ss_pred HHhcC
Confidence 88764
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=314.06 Aligned_cols=189 Identities=26% Similarity=0.389 Sum_probs=152.1
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
|+++|++++|+.. . .+ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 1 i~~~~l~~~~~~~--------~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i-~~~g~~~~~~~~~~ 69 (211)
T cd03298 1 VRLDKIRFSYGEQ--------P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRV-LINGVDVTAAPPAD 69 (211)
T ss_pred CEEEeEEEEeCCE--------e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEEcCcCCHhH
Confidence 4689999998632 1 27 99999999999999999999999999999999999986 6655
Q ss_pred -eEEEEcCCCCCCC-CCHHHHhccCCcC----C---HHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHH
Q 000720 660 -KKAYVPQSSWIQT-GTIRENILFGKDM----R---QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1333)
Q Consensus 660 -~iayv~Q~~~i~~-~Tv~enI~~g~~~----~---~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~ 730 (1333)
.++|++|++.++. .|++||+.++... . +++.+++++.+++.+ ..+..+.+||||||||++
T Consensus 70 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~ 138 (211)
T cd03298 70 RPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAG-----------LEKRLPGELSGGERQRVA 138 (211)
T ss_pred ccEEEEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHH-----------HHhCCcccCCHHHHHHHH
Confidence 3799999998765 5999999876421 1 122333444443322 223566799999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhhc-CCEEEEEeCCeEEEcc
Q 000720 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1333)
Q Consensus 731 LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g 801 (1333)
||||++.+|+++||||||++||+++.+.+.+.+.+... +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 139 ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 139 LARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999998877765443333 37899999999999865 9999999999998654
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=338.82 Aligned_cols=210 Identities=24% Similarity=0.362 Sum_probs=165.0
Q ss_pred cEEEeeeEEEcCCcccc----------------cCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCC
Q 000720 590 AIDIEAGEYAWDAREEN----------------FKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISG 652 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~----------------~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G 652 (1333)
.|+++|++..+..+... .....+.+++ ||++++||+++|+||||||||||+++|+|+++|++|
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG 83 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG 83 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCC
Confidence 47777777776543110 0012346899 999999999999999999999999999999999999
Q ss_pred cEEEECC-----------------eEEEEcCCCCCC-CCCHHHHhccCCcC---CH----HHHHHHHHHcccchHHHhhc
Q 000720 653 AAIKVHG-----------------KKAYVPQSSWIQ-TGTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWA 707 (1333)
Q Consensus 653 ~~i~~~g-----------------~iayv~Q~~~i~-~~Tv~enI~~g~~~---~~----~~~~~v~~~~~l~~d~~~~~ 707 (1333)
++ .++| +++|++|++.++ +.|++||+.++... .. ++..+.++.+++.+
T Consensus 84 ~I-~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~------ 156 (400)
T PRK10070 84 QV-LIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLEN------ 156 (400)
T ss_pred EE-EECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCh------
Confidence 86 5543 489999998876 46999999986432 21 12233344444322
Q ss_pred CCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhh-c
Q 000720 708 DGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-A 785 (1333)
Q Consensus 708 ~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~-~ 785 (1333)
.....+.+||||||||++||||++.+|+++||||||++||+.+++.+.+.+.+... .++|+|++||+++++. .
T Consensus 157 -----~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~ 231 (400)
T PRK10070 157 -----YAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRI 231 (400)
T ss_pred -----hhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHh
Confidence 23466789999999999999999999999999999999999998888765544333 4799999999999875 5
Q ss_pred CCEEEEEeCCeEEEccChHHHHhhcc
Q 000720 786 ADLVLVMKDGKIEQSGKYEDLIADQN 811 (1333)
Q Consensus 786 aD~i~vl~~G~i~~~g~~~~l~~~~~ 811 (1333)
||+|++|++|++++.|+++++..++.
T Consensus 232 ~Dri~vL~~G~i~~~g~~~~l~~~~~ 257 (400)
T PRK10070 232 GDRIAIMQNGEVVQVGTPDEILNNPA 257 (400)
T ss_pred CCEEEEEECCEEEecCCHHHHHhCcc
Confidence 99999999999999999999876443
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=322.17 Aligned_cols=202 Identities=26% Similarity=0.378 Sum_probs=163.0
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCC---CcC--CCCcEEEECC----
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGE---IPR--ISGAAIKVHG---- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~---~~~--~~G~~i~~~g---- 659 (1333)
.++++|+++.|+. ...+++ ||++++||+++|+||||||||||+++|+|+ .+| ++|++ .++|
T Consensus 3 ~l~~~~~~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i-~~~g~~~~ 73 (250)
T PRK14245 3 KIDARDVNFWYGD--------FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEI-RIDGRNIY 73 (250)
T ss_pred EEEEEEEEEEECC--------EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEE-EECCEecc
Confidence 5889999999963 358999 999999999999999999999999999996 454 47875 4433
Q ss_pred -----------eEEEEcCCCCCCCCCHHHHhccCCcC----CH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCC
Q 000720 660 -----------KKAYVPQSSWIQTGTIRENILFGKDM----RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1333)
Q Consensus 660 -----------~iayv~Q~~~i~~~Tv~enI~~g~~~----~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~ 720 (1333)
.++|+||++.+++.|++||+.++... +. ++.++.++.+++.++++ +..++++.+
T Consensus 74 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~ 146 (250)
T PRK14245 74 DKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK-------DKLKESAFA 146 (250)
T ss_pred cccccHHHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchh-------hhhhCCccc
Confidence 47999999988778999999875321 11 12233444444432221 234567889
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeEEE
Q 000720 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQ 799 (1333)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~ 799 (1333)
||||||||++||||++.+|+++||||||++||+.+++.+.+. ++.+.+++|||++||+++.+. .||++++|++|++++
T Consensus 147 LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~ 225 (250)
T PRK14245 147 LSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEEL-IHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVE 225 (250)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-HHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999998877664 444456799999999999875 599999999999999
Q ss_pred ccChHHHHh
Q 000720 800 SGKYEDLIA 808 (1333)
Q Consensus 800 ~g~~~~l~~ 808 (1333)
.|+++++.+
T Consensus 226 ~~~~~~~~~ 234 (250)
T PRK14245 226 YDDTKKIFT 234 (250)
T ss_pred ECCHHHHhc
Confidence 999999875
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-34 Score=323.97 Aligned_cols=203 Identities=23% Similarity=0.318 Sum_probs=162.9
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCc-----CCCCcEEEECC---
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG--- 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~-----~~~G~~i~~~g--- 659 (1333)
..++++|++++|+. ...+++ ||++++||+++|+|+||||||||+++|+|+.+ |++|++ .++|
T Consensus 20 ~~l~~~~l~~~~~~--------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i-~~~g~~i 90 (268)
T PRK14248 20 HILEVKDLSIYYGE--------KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEI-LYEGLNI 90 (268)
T ss_pred ceEEEEEEEEEeCC--------ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEE-EECCEEc
Confidence 46999999999963 358999 99999999999999999999999999999864 688975 4432
Q ss_pred ------------eEEEEcCCCCCCCCCHHHHhccCCcCC----H----HHHHHHHHHcccchHHHhhcCCCccccCCCCC
Q 000720 660 ------------KKAYVPQSSWIQTGTIRENILFGKDMR----Q----SFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1333)
Q Consensus 660 ------------~iayv~Q~~~i~~~Tv~enI~~g~~~~----~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~ 719 (1333)
.++|++|++.+++.|++||+.++.... . +...+.++.+++..++ ....+.++.
T Consensus 91 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~ 163 (268)
T PRK14248 91 LDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEV-------KDRLHSSAL 163 (268)
T ss_pred ccccccHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcch-------HHHHhcCcc
Confidence 479999999988889999998753211 1 1112222333322111 123456788
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeEE
Q 000720 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIE 798 (1333)
Q Consensus 720 ~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~ 798 (1333)
+||||||||++||||++++|+++||||||++||+.+++.+.+ +++.+.+++|||++||+++.+. .||++++|++|+++
T Consensus 164 ~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~ 242 (268)
T PRK14248 164 SLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEE-LITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLV 242 (268)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHH-HHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999887765 4555555789999999999875 59999999999999
Q ss_pred EccChHHHHh
Q 000720 799 QSGKYEDLIA 808 (1333)
Q Consensus 799 ~~g~~~~l~~ 808 (1333)
+.|+++++..
T Consensus 243 ~~~~~~~~~~ 252 (268)
T PRK14248 243 EYDQTEQIFT 252 (268)
T ss_pred EeCCHHHHHh
Confidence 9999988865
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=325.91 Aligned_cols=202 Identities=27% Similarity=0.417 Sum_probs=164.5
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--------
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g-------- 659 (1333)
..++++|++++|+.+ ..+.+++ ||++++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 6 ~~l~~~nl~~~~~~~------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I-~~~g~~i~~~~~ 78 (271)
T PRK13632 6 VMIKVENVSFSYPNS------ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI-KIDGITISKENL 78 (271)
T ss_pred eEEEEEeEEEEcCCC------CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE-EECCEecCcCCH
Confidence 358999999999642 2468999 99999999999999999999999999999999999986 5543
Q ss_pred -----eEEEEcCCC--CCCCCCHHHHhccCCc---CCHHH----HHHHHHHcccchHHHhhcCCCccccCCCCCCCChHH
Q 000720 660 -----KKAYVPQSS--WIQTGTIRENILFGKD---MRQSF----YEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1333)
Q Consensus 660 -----~iayv~Q~~--~i~~~Tv~enI~~g~~---~~~~~----~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQ 725 (1333)
.++|++|+| .+++.|++||+.++.. ++.+. .+++++..++.. ..++++.+|||||
T Consensus 79 ~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~ 147 (271)
T PRK13632 79 KEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMED-----------YLDKEPQNLSGGQ 147 (271)
T ss_pred HHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHH-----------HhhCCcccCCHHH
Confidence 379999998 4567899999987532 22222 223333333321 2346778999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhhcCCEEEEEeCCeEEEccChH
Q 000720 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYE 804 (1333)
Q Consensus 726 kqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~~ 804 (1333)
|||++||||++.+|+++||||||++||+.+.+.+++.+.+...+ ++|+|++||+++.+..||++++|++|++.+.|+.+
T Consensus 148 ~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~ 227 (271)
T PRK13632 148 KQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPK 227 (271)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHH
Confidence 99999999999999999999999999999988887654443334 48999999999988789999999999999999988
Q ss_pred HHHh
Q 000720 805 DLIA 808 (1333)
Q Consensus 805 ~l~~ 808 (1333)
++..
T Consensus 228 ~~~~ 231 (271)
T PRK13632 228 EILN 231 (271)
T ss_pred HHhc
Confidence 8764
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=305.98 Aligned_cols=165 Identities=28% Similarity=0.542 Sum_probs=147.1
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++++|+.. ..+.+++ ||++++||+++|+||||||||||+++|+|+.+|.+|++ .++|
T Consensus 1 i~~~~~~~~~~~~------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 73 (178)
T cd03247 1 LSINNVSFSYPEQ------EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI-TLDGVPVSDLEKAL 73 (178)
T ss_pred CEEEEEEEEeCCC------CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEE-EECCEEHHHHHHHH
Confidence 4689999999643 2368999 99999999999999999999999999999999999986 6665
Q ss_pred --eEEEEcCCCCCCCCCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHcc
Q 000720 660 --KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS 737 (1333)
Q Consensus 660 --~iayv~Q~~~i~~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~ 737 (1333)
.++|++|++++++.|++||+ +.+||||||||++||||++.
T Consensus 74 ~~~i~~~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~ 115 (178)
T cd03247 74 SSLISVLNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQ 115 (178)
T ss_pred HhhEEEEccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhc
Confidence 37999999998888999998 45899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEcc
Q 000720 738 NSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSG 801 (1333)
Q Consensus 738 ~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g 801 (1333)
+|+++||||||++||+++.+.+++.+ +...+++|+|++||++++++.||++++|++|++++.|
T Consensus 116 ~p~~lllDEP~~~LD~~~~~~l~~~l-~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 116 DAPIVLLDEPTVGLDPITERQLLSLI-FEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHH-HHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999988777644 4445689999999999999889999999999998754
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-34 Score=322.73 Aligned_cols=199 Identities=19% Similarity=0.301 Sum_probs=161.6
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|+++.|+. .+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 5 ~l~~~~l~~~~~~--------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~ 75 (255)
T PRK11300 5 LLSVSGLMMRFGG--------LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTI-LLRGQHIEGLPGH 75 (255)
T ss_pred eEEEeeEEEEECC--------EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceE-EECCEECCCCCHH
Confidence 5899999999953 368999 99999999999999999999999999999999999986 5554
Q ss_pred -----eEEEEcCCCCCCC-CCHHHHhccCCcC----------------CH------HHHHHHHHHcccchHHHhhcCCCc
Q 000720 660 -----KKAYVPQSSWIQT-GTIRENILFGKDM----------------RQ------SFYEEVLEGCALNQDIEMWADGDL 711 (1333)
Q Consensus 660 -----~iayv~Q~~~i~~-~Tv~enI~~g~~~----------------~~------~~~~~v~~~~~l~~d~~~~~~g~~ 711 (1333)
.++|++|++.++. .|++||+.++... +. .+.++.++.. |..
T Consensus 76 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~ 144 (255)
T PRK11300 76 QIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERV-----------GLL 144 (255)
T ss_pred HHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhC-----------Chh
Confidence 2689999998765 5999999975310 00 0111111211 222
Q ss_pred cccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhhc-CCEE
Q 000720 712 SVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDA-ADLV 789 (1333)
Q Consensus 712 t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~~-aD~i 789 (1333)
...++++.+||||||||++||||++.+|+++||||||++||+...+.+.+.+.+...+ ++|||++||+++.+.. ||++
T Consensus 145 ~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i 224 (255)
T PRK11300 145 EHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRI 224 (255)
T ss_pred hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEE
Confidence 3445788899999999999999999999999999999999999988777654443344 7899999999999855 9999
Q ss_pred EEEeCCeEEEccChHHHHh
Q 000720 790 LVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 790 ~vl~~G~i~~~g~~~~l~~ 808 (1333)
++|++|++++.|+.+++..
T Consensus 225 ~~l~~g~i~~~~~~~~~~~ 243 (255)
T PRK11300 225 YVVNQGTPLANGTPEEIRN 243 (255)
T ss_pred EEEECCeEEecCCHHHHhh
Confidence 9999999999999888754
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-34 Score=321.45 Aligned_cols=198 Identities=25% Similarity=0.416 Sum_probs=161.5
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++++|+. ...+++ ||++++|++++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 3 l~~~~l~~~~~~--------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i-~~~g~~~~~~~~~~ 73 (258)
T PRK13548 3 LEARNLSVRLGG--------RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEV-RLNGRPLADWSPAE 73 (258)
T ss_pred EEEEeEEEEeCC--------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEE-EECCEEcccCCHHH
Confidence 789999999963 358999 99999999999999999999999999999999999986 5554
Q ss_pred ---eEEEEcCCCCC-CCCCHHHHhccCCcCC-------HHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHH
Q 000720 660 ---KKAYVPQSSWI-QTGTIRENILFGKDMR-------QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728 (1333)
Q Consensus 660 ---~iayv~Q~~~i-~~~Tv~enI~~g~~~~-------~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqR 728 (1333)
.++|++|++.+ ++.|++||+.++.... ..+.++.++..++. ...+..+.+||||||||
T Consensus 74 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGe~qr 142 (258)
T PRK13548 74 LARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLA-----------HLAGRDYPQLSGGEQQR 142 (258)
T ss_pred hhhheEEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCH-----------hHhcCCcccCCHHHHHH
Confidence 37999999876 6789999998763211 11222333333332 12345778999999999
Q ss_pred HHHHHHHc------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEecCchhhhh-cCCEEEEEeCCeEEEc
Q 000720 729 IQLARAVY------SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQS 800 (1333)
Q Consensus 729 v~LARAl~------~~~~illLDEP~saLD~~~~~~l~~~~~~~~-~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~ 800 (1333)
++||||++ .+|+++||||||++||+.+.+.+.+.+.+.. .+++|||++||+++.+. .||+|++|++|++++.
T Consensus 143 v~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 222 (258)
T PRK13548 143 VQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVAD 222 (258)
T ss_pred HHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEee
Confidence 99999999 5999999999999999999887776444333 35799999999999986 5999999999999999
Q ss_pred cChHHHHh
Q 000720 801 GKYEDLIA 808 (1333)
Q Consensus 801 g~~~~l~~ 808 (1333)
|+++++..
T Consensus 223 ~~~~~~~~ 230 (258)
T PRK13548 223 GTPAEVLT 230 (258)
T ss_pred CCHHHHhC
Confidence 99988765
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-34 Score=320.43 Aligned_cols=203 Identities=25% Similarity=0.333 Sum_probs=162.7
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcC-----CCCcEEEECC----
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG---- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~-----~~G~~i~~~g---- 659 (1333)
.++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+.+| ++|++ .++|
T Consensus 3 ~l~~~~l~~~~~~--------~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i-~~~g~~i~ 73 (250)
T PRK14247 3 KIEIRDLKVSFGQ--------VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEV-YLDGQDIF 73 (250)
T ss_pred eEEEEeeEEEECC--------eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEE-EECCEECC
Confidence 4889999999963 357999 999999999999999999999999999999874 68976 5544
Q ss_pred ---------eEEEEcCCCC-CCCCCHHHHhccCCcC-----CHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCC
Q 000720 660 ---------KKAYVPQSSW-IQTGTIRENILFGKDM-----RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1333)
Q Consensus 660 ---------~iayv~Q~~~-i~~~Tv~enI~~g~~~-----~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~ 720 (1333)
.++|++|++. +++.|++||+.++... ... +..+.++.+++.+.+. ...+..+.+
T Consensus 74 ~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~ 146 (250)
T PRK14247 74 KMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK-------DRLDAPAGK 146 (250)
T ss_pred cCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCCccc
Confidence 4799999986 4578999999875321 111 1223333333322111 123467789
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeEEE
Q 000720 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQ 799 (1333)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~ 799 (1333)
||||||||++||||++++|++++|||||++||+.+.+.+.+.+ +...+++|+|++||+++.+. .||++++|++|++++
T Consensus 147 LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l-~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 225 (250)
T PRK14247 147 LSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLF-LELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVE 225 (250)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH-HHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEE
Confidence 9999999999999999999999999999999999988877654 44456899999999999985 599999999999999
Q ss_pred ccChHHHHhh
Q 000720 800 SGKYEDLIAD 809 (1333)
Q Consensus 800 ~g~~~~l~~~ 809 (1333)
.|+++++.++
T Consensus 226 ~g~~~~~~~~ 235 (250)
T PRK14247 226 WGPTREVFTN 235 (250)
T ss_pred ECCHHHHHcC
Confidence 9999988753
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-34 Score=325.58 Aligned_cols=202 Identities=27% Similarity=0.374 Sum_probs=165.1
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|++++|+.. ...+.+++ |+++++||+++|+|+||||||||+++|+|+++|.+|++ .++|
T Consensus 4 ~l~~~~l~~~~~~~-----~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~i~~~~~~ 77 (277)
T PRK13642 4 ILEVENLVFKYEKE-----SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV-KIDGELLTAENVW 77 (277)
T ss_pred eEEEEEEEEEcCCC-----CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEE-EECCEECCcCCHH
Confidence 48899999999743 23458999 99999999999999999999999999999999999986 6654
Q ss_pred ----eEEEEcCCCC--CCCCCHHHHhccCCc---CCHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHH
Q 000720 660 ----KKAYVPQSSW--IQTGTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1333)
Q Consensus 660 ----~iayv~Q~~~--i~~~Tv~enI~~g~~---~~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQk 726 (1333)
.++|++|+|. ++..|+.|||.++.. ...+ +.+++++.+++.. .....+.+||||||
T Consensus 78 ~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~ 146 (277)
T PRK13642 78 NLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLD-----------FKTREPARLSGGQK 146 (277)
T ss_pred HHhcceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHh-----------HhhCCcccCCHHHH
Confidence 3799999983 667899999987532 1111 2233334333321 22356789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhhcCCEEEEEeCCeEEEccChHH
Q 000720 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYED 805 (1333)
Q Consensus 727 qRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~~~ 805 (1333)
||++||||++.+|+++||||||++||+.+.+.+.+.+.+...+ +.|+|++||+++.+..||+|++|++|++++.|++++
T Consensus 147 qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (277)
T PRK13642 147 QRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSE 226 (277)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999988887644333333 799999999999987899999999999999999998
Q ss_pred HHh
Q 000720 806 LIA 808 (1333)
Q Consensus 806 l~~ 808 (1333)
+..
T Consensus 227 ~~~ 229 (277)
T PRK13642 227 LFA 229 (277)
T ss_pred Hhc
Confidence 875
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=316.10 Aligned_cols=187 Identities=24% Similarity=0.386 Sum_probs=151.1
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++++|+.+ .+.+++ ||++++||+++|+||||||||||+++|+|+.+|.+|++ .++|
T Consensus 2 l~~~~l~~~~~~~-------~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i-~~~g~~~~~~~~~~ 73 (214)
T TIGR02673 2 IEFHNVSKAYPGG-------VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQV-RIAGEDVNRLRGRQ 73 (214)
T ss_pred EEEEeeeEEeCCC-------ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEEcccCCHHH
Confidence 6789999999522 368999 99999999999999999999999999999999999986 4443
Q ss_pred ------eEEEEcCCCCCC-CCCHHHHhccCCc---CCH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHH
Q 000720 660 ------KKAYVPQSSWIQ-TGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1333)
Q Consensus 660 ------~iayv~Q~~~i~-~~Tv~enI~~g~~---~~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQ 725 (1333)
.++|++|+|.++ ..|++||+.++.. .+. ++.++.++..++.+ .....+.+|||||
T Consensus 74 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~ 142 (214)
T TIGR02673 74 LPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEH-----------KADAFPEQLSGGE 142 (214)
T ss_pred HHHHHhheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-----------hhhCChhhCCHHH
Confidence 479999999876 4799999987532 111 22233344333322 1235567999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCe
Q 000720 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGK 796 (1333)
Q Consensus 726 kqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~ 796 (1333)
|||++||||++.+|+++||||||++||+.+...+.+.+.+...+++|+|++||+++++.. ||++++|++|+
T Consensus 143 ~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 143 QQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999888776544433458999999999999875 99999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=319.11 Aligned_cols=198 Identities=27% Similarity=0.410 Sum_probs=159.7
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|+++.|+. .+.+++ ||++++||+++|+||||||||||+++|+|+++|.+|++ .++|
T Consensus 1 l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 71 (230)
T TIGR03410 1 LEVSNLNVYYGQ--------SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSI-RLDGEDITKLPPHE 71 (230)
T ss_pred CEEEeEEEEeCC--------eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEE-EECCEECCCCCHHH
Confidence 468999999863 368999 99999999999999999999999999999999999986 5543
Q ss_pred ----eEEEEcCCCCCCC-CCHHHHhccCCcCC----HHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHH
Q 000720 660 ----KKAYVPQSSWIQT-GTIRENILFGKDMR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1333)
Q Consensus 660 ----~iayv~Q~~~i~~-~Tv~enI~~g~~~~----~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~ 730 (1333)
.++|++|++.++. .|++||+.++.... .+..+++++..+ +.....++++.+||||||||++
T Consensus 72 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~ 141 (230)
T TIGR03410 72 RARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFP----------VLKEMLGRRGGDLSGGQQQQLA 141 (230)
T ss_pred HHHhCeEEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHH----------hHHHHhhCChhhCCHHHHHHHH
Confidence 3799999997765 59999998764221 111222222221 0112234678899999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChHHHH
Q 000720 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLI 807 (1333)
Q Consensus 731 LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~~l~ 807 (1333)
||||++++|+++||||||++||+.+.+++.+.+.+...+ ++|+|++||+++++.. ||+++++++|++++.|+.+++.
T Consensus 142 la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~ 220 (230)
T TIGR03410 142 IARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220 (230)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcC
Confidence 999999999999999999999999988777654443333 7899999999999875 9999999999999999988873
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=330.27 Aligned_cols=197 Identities=26% Similarity=0.410 Sum_probs=163.5
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++++|++ ...++| ||++++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 3 l~~~~l~~~~~~--------~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i-~i~g~~~~~~~~~~ 73 (301)
T TIGR03522 3 IRVSSLTKLYGT--------QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSV-QVCGEDVLQNPKEV 73 (301)
T ss_pred EEEEEEEEEECC--------EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEEcccChHHH
Confidence 789999999963 358999 99999999999999999999999999999999999986 6655
Q ss_pred --eEEEEcCCCCCCC-CCHHHHhccCCcC---C----HHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHH
Q 000720 660 --KKAYVPQSSWIQT-GTIRENILFGKDM---R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1333)
Q Consensus 660 --~iayv~Q~~~i~~-~Tv~enI~~g~~~---~----~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv 729 (1333)
.+||+||++.++. .|++||+.+.... . .++.++.++..++. ...++++.+||||||||+
T Consensus 74 ~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LS~G~~qrv 142 (301)
T TIGR03522 74 QRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLR-----------PEQHKKIGQLSKGYRQRV 142 (301)
T ss_pred HhceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-----------hHhcCchhhCCHHHHHHH
Confidence 4799999998765 5999999764321 1 11223333333332 233567889999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChHHHHh
Q 000720 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 730 ~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
+||||++++|++++|||||+|||+...+.+.+. ++.+.+++|||++||+++.++. ||+|++|++|++++.|+.+++..
T Consensus 143 ~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~-l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 143 GLAQALIHDPKVLILDEPTTGLDPNQLVEIRNV-IKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 999999999999999999999999998877764 4555568999999999998865 99999999999999999998865
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-34 Score=318.22 Aligned_cols=204 Identities=20% Similarity=0.303 Sum_probs=161.1
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|+++.|+. .+.+++ ||++++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 5 ~l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i-~~~g~~~~~~~~~ 75 (237)
T PRK11614 5 MLSFDKVSAHYGK--------IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRI-VFDGKDITDWQTA 75 (237)
T ss_pred EEEEEeEEEeeCC--------ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceE-EECCEecCCCCHH
Confidence 4889999999853 368999 99999999999999999999999999999999999986 5544
Q ss_pred -----eEEEEcCCCCCCC-CCHHHHhccCCcC-CHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHH
Q 000720 660 -----KKAYVPQSSWIQT-GTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732 (1333)
Q Consensus 660 -----~iayv~Q~~~i~~-~Tv~enI~~g~~~-~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LA 732 (1333)
.++|++|++.++. .|++||+.++... .....++.++. -++.++... .....++.+||||||||++||
T Consensus 76 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~l~~~~~l~-~~~~~~~~~LS~G~~qrl~la 149 (237)
T PRK11614 76 KIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKW-----VYELFPRLH-ERRIQRAGTMSGGEQQMLAIG 149 (237)
T ss_pred HHHHhCEEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHH-----HHHHHHHHH-HHHhCchhhCCHHHHHHHHHH
Confidence 3799999987765 5999999876422 11111111111 011111001 112356789999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeEEEccChHHHHh
Q 000720 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 733 RAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
||++.+|+++||||||++||+.+.+.+.+.+.+...+++|+|++||+++++. .||++++|++|++++.|+++++..
T Consensus 150 ~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 150 RALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred HHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 9999999999999999999999988877654443345899999999999865 599999999999999999998864
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=318.63 Aligned_cols=196 Identities=30% Similarity=0.395 Sum_probs=153.3
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++++|+... ...+.+++ |+++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 2 l~~~~v~~~~~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 76 (228)
T cd03257 2 LEVKNLSVSFPTGG----GSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSI-IFDGKDLLKLSRRL 76 (228)
T ss_pred eEEEeeeEeccCCC----cceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEEccccchhh
Confidence 67899999996420 11368999 99999999999999999999999999999999999986 4433
Q ss_pred ------eEEEEcCCCC--C-CCCCHHHHhccCCcC-----CHHHHH----HHHHHcccchHHHhhcCCCccccCCCCCCC
Q 000720 660 ------KKAYVPQSSW--I-QTGTIRENILFGKDM-----RQSFYE----EVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1333)
Q Consensus 660 ------~iayv~Q~~~--i-~~~Tv~enI~~g~~~-----~~~~~~----~v~~~~~l~~d~~~~~~g~~t~ig~~g~~L 721 (1333)
+++|++|++. + ...|++||+.++... .....+ +.++..++. ....++++.+|
T Consensus 77 ~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~L 146 (228)
T cd03257 77 RKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLP----------EEVLNRYPHEL 146 (228)
T ss_pred HHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCC----------hhHhhCCchhc
Confidence 4899999983 3 467999999764211 111111 122222211 12345678899
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhh-cCCEEEEEeCCeEEE
Q 000720 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQ 799 (1333)
Q Consensus 722 SGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~ 799 (1333)
|||||||++||||++.+|+++||||||++||+.+.+.+.+.+.+...+ ++|||++||+++.+. .||++++|++|++++
T Consensus 147 S~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 226 (228)
T cd03257 147 SGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVE 226 (228)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEe
Confidence 999999999999999999999999999999999988777654433334 799999999999987 599999999999986
Q ss_pred cc
Q 000720 800 SG 801 (1333)
Q Consensus 800 ~g 801 (1333)
.|
T Consensus 227 ~g 228 (228)
T cd03257 227 EG 228 (228)
T ss_pred cC
Confidence 54
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-34 Score=318.69 Aligned_cols=198 Identities=26% Similarity=0.352 Sum_probs=159.6
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 2 ~l~~~~l~~~~~~--------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~ 72 (242)
T PRK11124 2 SIQLNGINCFYGA--------HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL-NIAGNHFDFSKTP 72 (242)
T ss_pred EEEEEeeEEEECC--------eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEeccccccc
Confidence 3789999999963 358999 99999999999999999999999999999999999986 5543
Q ss_pred ----------eEEEEcCCCCCCC-CCHHHHhccCC-c---CCHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCC
Q 000720 660 ----------KKAYVPQSSWIQT-GTIRENILFGK-D---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1333)
Q Consensus 660 ----------~iayv~Q~~~i~~-~Tv~enI~~g~-~---~~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~ 720 (1333)
.++|++|++.++. .|++||+.++. . .... +..+.++..++ ....+..+.+
T Consensus 73 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~ 141 (242)
T PRK11124 73 SDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRL-----------KPYADRFPLH 141 (242)
T ss_pred chhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-----------hhhhhCChhh
Confidence 3799999997765 69999996421 1 1111 11222222222 2334567789
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEecCchhhhhc-CCEEEEEeCCeEE
Q 000720 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE 798 (1333)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~-~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~ 798 (1333)
||||||||++||||++.+|+++||||||++||+.+.+.+.+. ++.. .+++|+|++||+++.+.. ||++++|++|+++
T Consensus 142 LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~-l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~ 220 (242)
T PRK11124 142 LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSI-IRELAETGITQVIVTHEVEVARKTASRVVYMENGHIV 220 (242)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHH-HHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999998887764 4444 358999999999999865 9999999999999
Q ss_pred EccChHHHHh
Q 000720 799 QSGKYEDLIA 808 (1333)
Q Consensus 799 ~~g~~~~l~~ 808 (1333)
+.|+++++.+
T Consensus 221 ~~~~~~~~~~ 230 (242)
T PRK11124 221 EQGDASCFTQ 230 (242)
T ss_pred EeCCHHHhcC
Confidence 9999887643
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=319.45 Aligned_cols=202 Identities=25% Similarity=0.357 Sum_probs=163.1
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCC-----CCcEEEEC-----
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI-----SGAAIKVH----- 658 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~-----~G~~i~~~----- 658 (1333)
.++++|+++.|+. .+.+++ ||++++|++++|+||||||||||+++|+|+.+|. +|++ .++
T Consensus 4 ~l~~~~l~~~~~~--------~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v-~~~g~~~~ 74 (251)
T PRK14249 4 KIKIRGVNFFYHK--------HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAV-LLDNENIY 74 (251)
T ss_pred eEEEEEEEEEECC--------eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEE-EECCEEcc
Confidence 5889999999963 358999 9999999999999999999999999999999987 5765 332
Q ss_pred ----------CeEEEEcCCCCCCCCCHHHHhccCCcCC----HHH----HHHHHHHcccchHHHhhcCCCccccCCCCCC
Q 000720 659 ----------GKKAYVPQSSWIQTGTIRENILFGKDMR----QSF----YEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1333)
Q Consensus 659 ----------g~iayv~Q~~~i~~~Tv~enI~~g~~~~----~~~----~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~ 720 (1333)
..++|++|++.+++.|++||+.++.... ++. .++.++..++.+.+ .+..++++.+
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~ 147 (251)
T PRK14249 75 SPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEV-------KDNLHKSGLA 147 (251)
T ss_pred ccccChHHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhh-------hhHhhCCccc
Confidence 3489999999888889999998864321 111 11122222222111 1234578899
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEE
Q 000720 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1333)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~ 799 (1333)
||||||||++||||++.+|+++||||||++||+.+...+.+ +++.+.+++|||++||+++.+.. ||++++|++|++++
T Consensus 148 LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~ 226 (251)
T PRK14249 148 LSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEE-LMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVE 226 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEE
Confidence 99999999999999999999999999999999999887765 55555567999999999999865 89999999999999
Q ss_pred ccChHHHHh
Q 000720 800 SGKYEDLIA 808 (1333)
Q Consensus 800 ~g~~~~l~~ 808 (1333)
.|+.+++..
T Consensus 227 ~~~~~~~~~ 235 (251)
T PRK14249 227 YGRTGEIFS 235 (251)
T ss_pred eCCHHHHHh
Confidence 999998865
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-34 Score=299.93 Aligned_cols=206 Identities=27% Similarity=0.415 Sum_probs=167.3
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCe--------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-------- 660 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~-------- 660 (1333)
-.+++|.+..|.. ..+|++ ||++++||+++++|+||+||||||++|.|..++.+|++ ..+|+
T Consensus 3 mL~v~~l~~~YG~--------~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I-~~~G~dit~~p~~ 73 (237)
T COG0410 3 MLEVENLSAGYGK--------IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRI-IFDGEDITGLPPH 73 (237)
T ss_pred ceeEEeEeecccc--------eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeE-EECCeecCCCCHH
Confidence 3678899888864 478999 99999999999999999999999999999999999986 66663
Q ss_pred ------EEEEcCCCCCC-CCCHHHHhccCCcCCHH-HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHH
Q 000720 661 ------KAYVPQSSWIQ-TGTIRENILFGKDMRQS-FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732 (1333)
Q Consensus 661 ------iayv~Q~~~i~-~~Tv~enI~~g~~~~~~-~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LA 732 (1333)
++||||...+| +.||+||+..|....+. ...+. .+++-.+.+|.- ....++++.+|||||||-++||
T Consensus 74 ~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~----~~e~v~~lFP~L-ker~~~~aG~LSGGEQQMLAia 148 (237)
T COG0410 74 ERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQER----DLEEVYELFPRL-KERRNQRAGTLSGGEQQMLAIA 148 (237)
T ss_pred HHHhCCeEeCcccccchhhCcHHHHHhhhhhcccccccccc----cHHHHHHHChhH-HHHhcCcccCCChHHHHHHHHH
Confidence 69999998876 57999999987543321 11110 011223334421 1234578999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhh-hcCCEEEEEeCCeEEEccChHHHHhh
Q 000720 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDLIAD 809 (1333)
Q Consensus 733 RAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l-~~aD~i~vl~~G~i~~~g~~~~l~~~ 809 (1333)
|||+.+|++++||||+.||-|...++||+.+.+...+ +.||++|.++..+. +.|||.++|++|+|+.+|+.+++.++
T Consensus 149 RALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~ 227 (237)
T COG0410 149 RALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227 (237)
T ss_pred HHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence 9999999999999999999999999999855443334 56999999999985 66999999999999999999999873
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-34 Score=323.04 Aligned_cols=201 Identities=19% Similarity=0.263 Sum_probs=163.8
Q ss_pred CccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC-------
Q 000720 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (1333)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g------- 659 (1333)
...+.++|++++|+. ...+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 5 ~~~l~i~~l~~~~~~--------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~~~~~~ 75 (265)
T PRK10253 5 VARLRGEQLTLGYGK--------YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHV-WLDGEHIQHYA 75 (265)
T ss_pred ccEEEEEEEEEEECC--------EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEE-EECCEEhhhCC
Confidence 457999999999964 258999 99999999999999999999999999999999999986 6654
Q ss_pred ------eEEEEcCCCCCC-CCCHHHHhccCC-cC-------CH---HHHHHHHHHcccchHHHhhcCCCccccCCCCCCC
Q 000720 660 ------KKAYVPQSSWIQ-TGTIRENILFGK-DM-------RQ---SFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1333)
Q Consensus 660 ------~iayv~Q~~~i~-~~Tv~enI~~g~-~~-------~~---~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~L 721 (1333)
.++|++|++.++ +.|++||+.++. +. .+ ++.++.++..++. ...+.++.+|
T Consensus 76 ~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~L 144 (265)
T PRK10253 76 SKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGIT-----------HLADQSVDTL 144 (265)
T ss_pred HHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCH-----------HHhcCCcccC
Confidence 379999998765 579999998752 11 11 1222333333332 1234678899
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhh-cCCEEEEEeCCeEEE
Q 000720 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQ 799 (1333)
Q Consensus 722 SGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~ 799 (1333)
|||||||++||||++.+|+++||||||++||+.+.+.+.+.+.+... +++|+|++||+++.+. .||++++|++|++++
T Consensus 145 S~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~ 224 (265)
T PRK10253 145 SGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVA 224 (265)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999998888765444333 3789999999999875 599999999999999
Q ss_pred ccChHHHHh
Q 000720 800 SGKYEDLIA 808 (1333)
Q Consensus 800 ~g~~~~l~~ 808 (1333)
.|+++++..
T Consensus 225 ~g~~~~~~~ 233 (265)
T PRK10253 225 QGAPKEIVT 233 (265)
T ss_pred eCCHHHHhh
Confidence 999988764
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-34 Score=318.94 Aligned_cols=198 Identities=21% Similarity=0.369 Sum_probs=160.8
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 3 ~l~~~~l~~~~~~--------~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~ 73 (241)
T PRK10895 3 TLTAKNLAKAYKG--------RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNI-IIDDEDISLLPLH 73 (241)
T ss_pred eEEEeCcEEEeCC--------EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEECCCCCHH
Confidence 3789999999963 368999 99999999999999999999999999999999999986 5543
Q ss_pred -----eEEEEcCCCCCCC-CCHHHHhccCCcC----CHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHH
Q 000720 660 -----KKAYVPQSSWIQT-GTIRENILFGKDM----RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1333)
Q Consensus 660 -----~iayv~Q~~~i~~-~Tv~enI~~g~~~----~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQ 725 (1333)
.++|++|++.++. .|++||+.+.... +.. +.++.++..++ ....+.++.+|||||
T Consensus 74 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~ 142 (241)
T PRK10895 74 ARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHI-----------EHLRDSMGQSLSGGE 142 (241)
T ss_pred HHHHhCeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCC-----------HHHhhcchhhCCHHH
Confidence 4799999987665 6999999875322 111 12222222222 123456788999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEecCchhhhh-cCCEEEEEeCCeEEEccCh
Q 000720 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKY 803 (1333)
Q Consensus 726 kqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~-~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~~ 803 (1333)
|||++||||++.+|+++||||||++||+...+.+.+. ++.+ .+++|+|++||+++.+. .||++++|++|++++.|++
T Consensus 143 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~ 221 (241)
T PRK10895 143 RRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRI-IEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTP 221 (241)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCH
Confidence 9999999999999999999999999999998877654 4443 35899999999998775 4999999999999999999
Q ss_pred HHHHh
Q 000720 804 EDLIA 808 (1333)
Q Consensus 804 ~~l~~ 808 (1333)
+++.+
T Consensus 222 ~~~~~ 226 (241)
T PRK10895 222 TEILQ 226 (241)
T ss_pred HHHhc
Confidence 88764
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=319.48 Aligned_cols=202 Identities=24% Similarity=0.375 Sum_probs=162.5
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcC-----CCCcEEEECC----
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG---- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~-----~~G~~i~~~g---- 659 (1333)
.++++|+++.|+. .+.++| ||++++||+++|+||||||||||+++|+|..++ ++|++ .++|
T Consensus 3 ~l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i-~~~g~~~~ 73 (250)
T PRK14240 3 KISVKDLDLFYGD--------FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEV-LLDGQDIY 73 (250)
T ss_pred eEEEEEEEEEECC--------ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEE-EECCEEcc
Confidence 4889999999963 258999 999999999999999999999999999998763 57875 5443
Q ss_pred -----------eEEEEcCCCCCCCCCHHHHhccCCcCC----H----HHHHHHHHHcccchHHHhhcCCCccccCCCCCC
Q 000720 660 -----------KKAYVPQSSWIQTGTIRENILFGKDMR----Q----SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1333)
Q Consensus 660 -----------~iayv~Q~~~i~~~Tv~enI~~g~~~~----~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~ 720 (1333)
.++|++|++.+++.|++||+.++.... . ++..+.++.+++.+++. ...++.+.+
T Consensus 74 ~~~~~~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~ 146 (250)
T PRK14240 74 KSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK-------DRLKKSALG 146 (250)
T ss_pred ccccchHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhH-------HHHhcCCCC
Confidence 479999999877799999998864211 1 11222333333322221 233567889
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEE
Q 000720 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1333)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~ 799 (1333)
||||||||++||||++.+|+++||||||++||+.+++.+.+ +++...+++|+|++||+++.+.. ||++++|++|++++
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~ 225 (250)
T PRK14240 147 LSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEE-LIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVE 225 (250)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999887765 55555567899999999998755 99999999999999
Q ss_pred ccChHHHHh
Q 000720 800 SGKYEDLIA 808 (1333)
Q Consensus 800 ~g~~~~l~~ 808 (1333)
.|+.+++..
T Consensus 226 ~~~~~~~~~ 234 (250)
T PRK14240 226 FGDTVDLFT 234 (250)
T ss_pred eCCHHHHHh
Confidence 999988765
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-34 Score=320.85 Aligned_cols=199 Identities=27% Similarity=0.342 Sum_probs=160.9
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
|+++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 1 i~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~i~~~~~~~ 71 (252)
T TIGR03005 1 VRFSDVTKRFGI--------LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQI-QVEGEQLYHMPGRN 71 (252)
T ss_pred CEEEEEEEEeCC--------eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEEcccccccc
Confidence 468999999963 358999 99999999999999999999999999999999999986 4433
Q ss_pred ----------------eEEEEcCCCCCC-CCCHHHHhccCCc----CCHH----HHHHHHHHcccchHHHhhcCCCcccc
Q 000720 660 ----------------KKAYVPQSSWIQ-TGTIRENILFGKD----MRQS----FYEEVLEGCALNQDIEMWADGDLSVV 714 (1333)
Q Consensus 660 ----------------~iayv~Q~~~i~-~~Tv~enI~~g~~----~~~~----~~~~v~~~~~l~~d~~~~~~g~~t~i 714 (1333)
.++|++|++.++ ..|++||+.++.. .... +..+.++..++ ....
T Consensus 72 ~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~ 140 (252)
T TIGR03005 72 GPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGL-----------ADKA 140 (252)
T ss_pred ccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----------hhHh
Confidence 479999998766 5799999987521 1111 12222333222 2234
Q ss_pred CCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhh-cCCEEEEE
Q 000720 715 GERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLD-AADLVLVM 792 (1333)
Q Consensus 715 g~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~-~aD~i~vl 792 (1333)
++.+.+||||||||++||||++++|+++||||||++||+.+...+.+.+.+...+ ++|+|++||+++.+. .||++++|
T Consensus 141 ~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l 220 (252)
T TIGR03005 141 DHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFF 220 (252)
T ss_pred hcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEE
Confidence 5677899999999999999999999999999999999999988777644433333 789999999999985 59999999
Q ss_pred eCCeEEEccChHHHHhh
Q 000720 793 KDGKIEQSGKYEDLIAD 809 (1333)
Q Consensus 793 ~~G~i~~~g~~~~l~~~ 809 (1333)
++|++++.|+++++.++
T Consensus 221 ~~G~i~~~g~~~~~~~~ 237 (252)
T TIGR03005 221 DKGRIVEQGKPDEIFRQ 237 (252)
T ss_pred ECCEEEEeCCHHHHhcC
Confidence 99999999999988753
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=331.55 Aligned_cols=186 Identities=25% Similarity=0.349 Sum_probs=153.3
Q ss_pred cccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC------------eEEEEcCCCCCCC-CCHH
Q 000720 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------------KKAYVPQSSWIQT-GTIR 676 (1333)
Q Consensus 611 ~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g------------~iayv~Q~~~i~~-~Tv~ 676 (1333)
.+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++| ++||+||++.++. .|++
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTA-RVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEEcccCHHHHHhhcEEecCCCCCCCCCcHH
Confidence 367999 99999999999999999999999999999999999986 6655 3799999987654 6999
Q ss_pred HHhccCCcC---CH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC
Q 000720 677 ENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFS 749 (1333)
Q Consensus 677 enI~~g~~~---~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~s 749 (1333)
||+.+.... .. ++.+++++.+++.+ ..++++.+||||||||++||||++++|+++||||||+
T Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 153 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEERAEELLELFELGE-----------AADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153 (302)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-----------HhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 999874321 11 12333444444322 2345678999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChHHHHh
Q 000720 750 AVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 750 aLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
|||+.+++.+.+.+.+...+|+|||++||+++.+.. ||+|++|++|+++..|+++++.+
T Consensus 154 gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 154 GLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 999999888776544333458999999999999865 99999999999999999988865
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-34 Score=323.35 Aligned_cols=201 Identities=23% Similarity=0.305 Sum_probs=162.6
Q ss_pred CccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC-------
Q 000720 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (1333)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g------- 659 (1333)
+..++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 9 ~~~l~i~~l~~~~~~--------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~ 79 (265)
T PRK10575 9 DTTFALRNVSFRVPG--------RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEI-LLDAQPLESWS 79 (265)
T ss_pred CceEEEeeEEEEECC--------EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEE-EECCEehhhCC
Confidence 346999999999963 358999 99999999999999999999999999999999999986 6655
Q ss_pred ------eEEEEcCCCCC-CCCCHHHHhccCCc-C-------CH---HHHHHHHHHcccchHHHhhcCCCccccCCCCCCC
Q 000720 660 ------KKAYVPQSSWI-QTGTIRENILFGKD-M-------RQ---SFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1333)
Q Consensus 660 ------~iayv~Q~~~i-~~~Tv~enI~~g~~-~-------~~---~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~L 721 (1333)
.++|++|++.+ +..|++||+.++.. . .. ++.++.++.+++.+ ..+....+|
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~L 148 (265)
T PRK10575 80 SKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKP-----------LAHRLVDSL 148 (265)
T ss_pred HHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHH-----------HhcCCcccC
Confidence 37999999754 45699999987531 0 11 12233334333321 234567799
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhh-cCCEEEEEeCCeEEE
Q 000720 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQ 799 (1333)
Q Consensus 722 SGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~ 799 (1333)
|||||||++||||++.+|+++||||||++||+.+.+.+.+.+.+...+ ++|+|++||+++++. .||+|++|++|++++
T Consensus 149 SgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~ 228 (265)
T PRK10575 149 SGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIA 228 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEE
Confidence 999999999999999999999999999999999988776644333333 789999999999985 599999999999999
Q ss_pred ccChHHHHh
Q 000720 800 SGKYEDLIA 808 (1333)
Q Consensus 800 ~g~~~~l~~ 808 (1333)
.|+.+++..
T Consensus 229 ~~~~~~~~~ 237 (265)
T PRK10575 229 QGTPAELMR 237 (265)
T ss_pred ecCHHHhcC
Confidence 999888764
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-34 Score=319.19 Aligned_cols=197 Identities=22% Similarity=0.315 Sum_probs=161.5
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|+++.|+. .+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 3 i~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i-~~~g~~~~~~~~~~ 73 (242)
T TIGR03411 3 LYLEGLSVSFDG--------FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSV-LFGGTDLTGLPEHQ 73 (242)
T ss_pred EEEEeeEEEcCC--------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeE-EECCeecCCCCHHH
Confidence 789999999963 358999 99999999999999999999999999999999999986 5543
Q ss_pred ----eEEEEcCCCCCCC-CCHHHHhccCCcCC---------------HHHHHHHHHHcccchHHHhhcCCCccccCCCCC
Q 000720 660 ----KKAYVPQSSWIQT-GTIRENILFGKDMR---------------QSFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1333)
Q Consensus 660 ----~iayv~Q~~~i~~-~Tv~enI~~g~~~~---------------~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~ 719 (1333)
.++|++|++.++. .|++||+.++.... +.+.++.++.. |.....++++.
T Consensus 74 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~ 142 (242)
T TIGR03411 74 IARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI-----------GLADEADRLAG 142 (242)
T ss_pred HHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHc-----------CCchhhcCChh
Confidence 3799999998766 59999998753211 01111222222 22233456788
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEE
Q 000720 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE 798 (1333)
Q Consensus 720 ~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~ 798 (1333)
+||||||||++||||++.+|+++||||||++||+.+.+.+.+ +++.+.+++|+|++||+++.+.. ||+|++|++|+++
T Consensus 143 ~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~-~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~ 221 (242)
T TIGR03411 143 LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAE-LLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVL 221 (242)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHH-HHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEE
Confidence 999999999999999999999999999999999999887766 45555557899999999999865 9999999999999
Q ss_pred EccChHHHHh
Q 000720 799 QSGKYEDLIA 808 (1333)
Q Consensus 799 ~~g~~~~l~~ 808 (1333)
+.|+++++..
T Consensus 222 ~~~~~~~~~~ 231 (242)
T TIGR03411 222 AEGSLDQVQA 231 (242)
T ss_pred eeCCHHHHhc
Confidence 9999988764
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-34 Score=315.74 Aligned_cols=195 Identities=25% Similarity=0.329 Sum_probs=156.1
Q ss_pred ccEEEeeeEEEcCCcccccCCC-cccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC-------
Q 000720 589 VAIDIEAGEYAWDAREENFKKP-TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~-~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g------- 659 (1333)
..++++|++++|+.+ .. .+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 5 ~~l~~~~l~~~~~~~-----~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i-~~~g~~~~~~~ 78 (228)
T PRK10584 5 NIVEVHHLKKSVGQG-----EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEV-SLVGQPLHQMD 78 (228)
T ss_pred ceEEEeeeEEEccCC-----CcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeE-EECCEEcccCC
Confidence 358999999999753 11 358999 99999999999999999999999999999999999986 4443
Q ss_pred ----------eEEEEcCCCCCCC-CCHHHHhccCCcC---CH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCC
Q 000720 660 ----------KKAYVPQSSWIQT-GTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1333)
Q Consensus 660 ----------~iayv~Q~~~i~~-~Tv~enI~~g~~~---~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~L 721 (1333)
.++|++|++.++. .|++||+.++... +. ++.++.++.+++.+ ....++.+|
T Consensus 79 ~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~L 147 (228)
T PRK10584 79 EEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGK-----------RLDHLPAQL 147 (228)
T ss_pred HHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHh-----------HhhCChhhC
Confidence 4899999987765 6999999864211 11 22233344444322 223567799
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhhcCCEEEEEeCCeEEEc
Q 000720 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDAADLVLVMKDGKIEQS 800 (1333)
Q Consensus 722 SGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~ 800 (1333)
|||||||++||||++.+|+++||||||++||+...+.+.+.+.+...+ ++|||++||+++++..||++++|++|++++.
T Consensus 148 S~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 148 SGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 999999999999999999999999999999999988777654433333 7899999999998877999999999999753
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-34 Score=324.48 Aligned_cols=198 Identities=21% Similarity=0.286 Sum_probs=159.9
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++++|+. .+++++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 2 l~~~~l~~~~~~--------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~i~~~~~~~ 72 (271)
T PRK13638 2 LATSDLWFRYQD--------EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAV-LWQGKPLDYSKRGL 72 (271)
T ss_pred eEEEEEEEEcCC--------cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEE-EECCEEcccccCCH
Confidence 678999999963 358999 99999999999999999999999999999999999986 4433
Q ss_pred -----eEEEEcCCCC--CCCCCHHHHhccCCc---CCHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHH
Q 000720 660 -----KKAYVPQSSW--IQTGTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1333)
Q Consensus 660 -----~iayv~Q~~~--i~~~Tv~enI~~g~~---~~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQ 725 (1333)
.++|++|++. ++..|+.||+.++.. .+.. +.+++++..++.. ..+..+.+|||||
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~ 141 (271)
T PRK13638 73 LALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQH-----------FRHQPIQCLSHGQ 141 (271)
T ss_pred HHHHhheEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHh-----------HhcCCchhCCHHH
Confidence 3799999975 466789999987421 1211 1122333333321 1235678999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeEEEccChH
Q 000720 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYE 804 (1333)
Q Consensus 726 kqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~~~ 804 (1333)
|||++||||++.+|+++||||||++||+.+...+.+.+.+...+++|+|++||+++.+. .||++++|++|++++.|+++
T Consensus 142 ~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 221 (271)
T PRK13638 142 KKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPG 221 (271)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999988877644433345889999999999985 49999999999999999998
Q ss_pred HHHh
Q 000720 805 DLIA 808 (1333)
Q Consensus 805 ~l~~ 808 (1333)
++..
T Consensus 222 ~~~~ 225 (271)
T PRK13638 222 EVFA 225 (271)
T ss_pred HHhc
Confidence 8765
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=315.00 Aligned_cols=188 Identities=27% Similarity=0.354 Sum_probs=151.3
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++++|+.. .+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 1 l~~~~l~~~~~~~-------~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~i~~~~~~~ 72 (214)
T cd03292 1 IEFINVTKTYPNG-------TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTI-RVNGQDVSDLRGRA 72 (214)
T ss_pred CEEEEEEEEeCCC-------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE-EECCEEcccCCHHH
Confidence 4688999999632 358999 99999999999999999999999999999999999986 5543
Q ss_pred ------eEEEEcCCCCCCC-CCHHHHhccCCcC---CH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHH
Q 000720 660 ------KKAYVPQSSWIQT-GTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1333)
Q Consensus 660 ------~iayv~Q~~~i~~-~Tv~enI~~g~~~---~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQ 725 (1333)
.++|++|++.++. .|++||+.++... .. ++.++.++.+++.+ ..+..+.+|||||
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~ 141 (214)
T cd03292 73 IPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSH-----------KHRALPAELSGGE 141 (214)
T ss_pred HHHHHHheEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-----------HhhCChhhcCHHH
Confidence 3799999987765 6999999875321 11 12223333333321 2235677999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeE
Q 000720 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKI 797 (1333)
Q Consensus 726 kqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i 797 (1333)
|||++||||++.+|+++||||||++||+++.+.+.+.+.+...+++|+|++||+++.+.. ||++++|++|++
T Consensus 142 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 142 QQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999887776544433458999999999999875 999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=321.57 Aligned_cols=208 Identities=24% Similarity=0.298 Sum_probs=161.8
Q ss_pred cEEEeeeEEEcCCccc-ccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--------
Q 000720 590 AIDIEAGEYAWDAREE-NFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~-~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g-------- 659 (1333)
.++++|++++|+.... ......+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~i~~~~~ 80 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTV-SFRGQDLYQLDR 80 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEEccccCH
Confidence 3789999999963200 00013468999 99999999999999999999999999999999999986 5443
Q ss_pred --------eEEEEcCCCC--C-CCCCHHHHhccCCc----CCH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCC
Q 000720 660 --------KKAYVPQSSW--I-QTGTIRENILFGKD----MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1333)
Q Consensus 660 --------~iayv~Q~~~--i-~~~Tv~enI~~g~~----~~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~ 720 (1333)
.++|++|+|. + ...|++||+.++.. +.. ++..++++..++.. ...+.++.+
T Consensus 81 ~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----------~~~~~~~~~ 150 (265)
T TIGR02769 81 KQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRS----------EDADKLPRQ 150 (265)
T ss_pred HHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCChhh
Confidence 4899999973 3 35799999965421 121 11222333332211 123467889
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhh-cCCEEEEEeCCeEE
Q 000720 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLD-AADLVLVMKDGKIE 798 (1333)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~ 798 (1333)
||||||||++||||++++|+++||||||++||+.+.+.+.+.+.+...+ ++|+|++||+++.+. .||++++|++|+++
T Consensus 151 LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 230 (265)
T TIGR02769 151 LSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIV 230 (265)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEE
Confidence 9999999999999999999999999999999999987776644333333 799999999999986 59999999999999
Q ss_pred EccChHHHHh
Q 000720 799 QSGKYEDLIA 808 (1333)
Q Consensus 799 ~~g~~~~l~~ 808 (1333)
+.|+.+++..
T Consensus 231 ~~g~~~~~~~ 240 (265)
T TIGR02769 231 EECDVAQLLS 240 (265)
T ss_pred EECCHHHHcC
Confidence 9999999876
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=314.29 Aligned_cols=186 Identities=31% Similarity=0.447 Sum_probs=149.7
Q ss_pred EeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC------------
Q 000720 593 IEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------------ 659 (1333)
Q Consensus 593 i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g------------ 659 (1333)
++|++++|+.. ..+++++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 2 ~~~l~~~~~~~------~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~~~ 74 (211)
T cd03225 2 LKNLSFSYPDG------ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEV-LVDGKDLTKLSLKELR 74 (211)
T ss_pred ceeEEEecCCC------CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceE-EECCEEcccCCHHHHH
Confidence 67889988642 2468999 99999999999999999999999999999999999986 5554
Q ss_pred -eEEEEcCCCC--CCCCCHHHHhccCCc---CCHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHH
Q 000720 660 -KKAYVPQSSW--IQTGTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1333)
Q Consensus 660 -~iayv~Q~~~--i~~~Tv~enI~~g~~---~~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv 729 (1333)
.++|++|++. +++.|++||+.++.. .+.. +.++.++..++. ....+++.+||||||||+
T Consensus 75 ~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgG~~qrv 143 (211)
T cd03225 75 RKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLE-----------GLRDRSPFTLSGGQKQRV 143 (211)
T ss_pred hhceEEecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcH-----------hhhcCCcccCCHHHHHHH
Confidence 3799999983 567899999987532 1111 122233333332 223467789999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCe
Q 000720 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGK 796 (1333)
Q Consensus 730 ~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~ 796 (1333)
+||||++++|+++||||||++||+.+++.+.+.+.+...+++|+|++||+++.+.. ||+|++|++|+
T Consensus 144 ~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 144 AIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999888877544433458999999999999876 99999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-34 Score=320.68 Aligned_cols=202 Identities=24% Similarity=0.332 Sum_probs=161.3
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcC-----CCCcEEEECC----
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG---- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~-----~~G~~i~~~g---- 659 (1333)
.++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+++| ++|++ .++|
T Consensus 4 ~l~~~~l~~~~~~--------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i-~~~g~~i~ 74 (253)
T PRK14267 4 AIETVNLRVYYGS--------NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEV-RLFGRNIY 74 (253)
T ss_pred eEEEEeEEEEeCC--------eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEE-EECCEEcc
Confidence 4889999999963 358999 999999999999999999999999999999987 48875 4433
Q ss_pred -----------eEEEEcCCCCCCC-CCHHHHhccCCcC-----CHH----HHHHHHHHcccchHHHhhcCCCccccCCCC
Q 000720 660 -----------KKAYVPQSSWIQT-GTIRENILFGKDM-----RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1333)
Q Consensus 660 -----------~iayv~Q~~~i~~-~Tv~enI~~g~~~-----~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g 718 (1333)
+++|++|++.++. .|++||+.++... ..+ +.+++++..++..++. ...++++
T Consensus 75 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~ 147 (253)
T PRK14267 75 SPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVK-------DRLNDYP 147 (253)
T ss_pred ccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchh-------hhhccCh
Confidence 4799999998765 5999999875321 111 1122222222221111 1235678
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeE
Q 000720 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKI 797 (1333)
Q Consensus 719 ~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i 797 (1333)
.+||||||||++||||++++|+++||||||++||+.+.+.+.+. ++...+++|+|++||+++.+. .||+|++|++|++
T Consensus 148 ~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~-l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i 226 (253)
T PRK14267 148 SNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEEL-LFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKL 226 (253)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHH-HHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEE
Confidence 89999999999999999999999999999999999998877764 444445799999999999875 4999999999999
Q ss_pred EEccChHHHHh
Q 000720 798 EQSGKYEDLIA 808 (1333)
Q Consensus 798 ~~~g~~~~l~~ 808 (1333)
++.|+++++.+
T Consensus 227 ~~~~~~~~~~~ 237 (253)
T PRK14267 227 IEVGPTRKVFE 237 (253)
T ss_pred EEeCCHHHHHh
Confidence 99999998865
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-34 Score=324.84 Aligned_cols=204 Identities=25% Similarity=0.386 Sum_probs=165.5
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
-++++|++++|+.... ....+++++ ||+|++||+++|+|+||||||||+++|+|+++|++|++ .++|
T Consensus 4 ~l~~~~l~~~~~~~~~--~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i-~i~g~~i~~~~~~ 80 (280)
T PRK13633 4 MIKCKNVSYKYESNEE--STEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKV-YVDGLDTSDEENL 80 (280)
T ss_pred eEEEeeeEEEcCCCCC--CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEeccccccH
Confidence 4889999999974300 002468999 99999999999999999999999999999999999986 5543
Q ss_pred -----eEEEEcCCCC--CCCCCHHHHhccCCcC---CH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHH
Q 000720 660 -----KKAYVPQSSW--IQTGTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1333)
Q Consensus 660 -----~iayv~Q~~~--i~~~Tv~enI~~g~~~---~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQ 725 (1333)
.++|++|+|. ++..|+.||+.|+... +. ++.+++++.+++.+ ..++.+.+|||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-----------~~~~~~~~LS~G~ 149 (280)
T PRK13633 81 WDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYE-----------YRRHAPHLLSGGQ 149 (280)
T ss_pred HHHhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHh-----------HhhCCcccCCHHH
Confidence 3799999984 5567999999986421 21 22333444444432 2345678999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-h-CCCeEEEecCchhhhhcCCEEEEEeCCeEEEccCh
Q 000720 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-L-SQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKY 803 (1333)
Q Consensus 726 kqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~-~-~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~ 803 (1333)
|||++||||++.+|+++||||||++||+.+++.+.+. ++.+ . ++.|||++||+++.+..||++++|++|++++.|++
T Consensus 150 ~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~-l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~ 228 (280)
T PRK13633 150 KQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNT-IKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTP 228 (280)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCH
Confidence 9999999999999999999999999999998888764 4444 3 38899999999999877999999999999999999
Q ss_pred HHHHh
Q 000720 804 EDLIA 808 (1333)
Q Consensus 804 ~~l~~ 808 (1333)
+++..
T Consensus 229 ~~~~~ 233 (280)
T PRK13633 229 KEIFK 233 (280)
T ss_pred HHHhc
Confidence 98865
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=321.06 Aligned_cols=203 Identities=24% Similarity=0.378 Sum_probs=164.1
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCc-----CCCCcEEEECC---
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG--- 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~-----~~~G~~i~~~g--- 659 (1333)
..++++|++++|+. .+.+++ ||++++||+++|+|+||||||||+++|+|+.+ |++|++ .++|
T Consensus 9 ~~l~i~~v~~~~~~--------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i-~~~g~~i 79 (264)
T PRK14243 9 TVLRTENLNVYYGS--------FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKV-TFHGKNL 79 (264)
T ss_pred eEEEEeeeEEEECC--------EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEE-EECCEEc
Confidence 35899999999963 358999 99999999999999999999999999999876 368875 4433
Q ss_pred ------------eEEEEcCCCCCCCCCHHHHhccCCcCC---H---HHHHHHHHHcccchHHHhhcCCCccccCCCCCCC
Q 000720 660 ------------KKAYVPQSSWIQTGTIRENILFGKDMR---Q---SFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1333)
Q Consensus 660 ------------~iayv~Q~~~i~~~Tv~enI~~g~~~~---~---~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~L 721 (1333)
+++|++|++.+++.|++||+.++.... . ++..+.++.+++..++. ...++++.+|
T Consensus 80 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~L 152 (264)
T PRK14243 80 YAPDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVK-------DKLKQSGLSL 152 (264)
T ss_pred cccccChHHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHH-------HHhcCCcccC
Confidence 479999999887789999998764321 1 12223334444432222 1235678899
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEe-------
Q 000720 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMK------- 793 (1333)
Q Consensus 722 SGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~------- 793 (1333)
|||||||++||||++++|+++||||||++||+.+.+.+.+ ++..+.+++|||++||+++.+.. ||+|++|+
T Consensus 153 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~ 231 (264)
T PRK14243 153 SGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEE-LMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGG 231 (264)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeccccccc
Confidence 9999999999999999999999999999999999887765 45555556899999999998765 99999998
Q ss_pred --CCeEEEccChHHHHh
Q 000720 794 --DGKIEQSGKYEDLIA 808 (1333)
Q Consensus 794 --~G~i~~~g~~~~l~~ 808 (1333)
+|++++.|+.+++.+
T Consensus 232 ~~~g~i~~~~~~~~~~~ 248 (264)
T PRK14243 232 GRYGYLVEFDRTEKIFN 248 (264)
T ss_pred ccCceEEEeCCHHHHHh
Confidence 899999999999875
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-34 Score=323.00 Aligned_cols=201 Identities=24% Similarity=0.307 Sum_probs=163.5
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|++++|+.. ..+.++| |+++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 7 ~l~i~~l~~~~~~~------~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i-~~~g~~~~~~~~~ 79 (269)
T PRK13648 7 IIVFKNVSFQYQSD------ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEI-FYNNQAITDDNFE 79 (269)
T ss_pred eEEEEEEEEEcCCC------CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE-EECCEECCcCCHH
Confidence 58999999999743 2458999 99999999999999999999999999999999999986 6655
Q ss_pred ----eEEEEcCCCC--CCCCCHHHHhccCCcC---CHHH----HHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHH
Q 000720 660 ----KKAYVPQSSW--IQTGTIRENILFGKDM---RQSF----YEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1333)
Q Consensus 660 ----~iayv~Q~~~--i~~~Tv~enI~~g~~~---~~~~----~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQk 726 (1333)
.++|++|+|. ++..|+++|+.++... .... .+++++..++. ...+.++.+||||||
T Consensus 80 ~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~ 148 (269)
T PRK13648 80 KLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDML-----------ERADYEPNALSGGQK 148 (269)
T ss_pred HHHhheeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCc-----------hhhhCCcccCCHHHH
Confidence 3799999985 5567999999886432 1111 12223322222 123456789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhhcCCEEEEEeCCeEEEccChHH
Q 000720 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYED 805 (1333)
Q Consensus 727 qRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~~~ 805 (1333)
||++||||++.+|+++||||||++||+.+.+.+.+.+.+...+ ++|+|++||+++.+..||+|++|++|++++.|++++
T Consensus 149 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 228 (269)
T PRK13648 149 QRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTE 228 (269)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHH
Confidence 9999999999999999999999999999988877644333333 789999999999887799999999999999999988
Q ss_pred HHh
Q 000720 806 LIA 808 (1333)
Q Consensus 806 l~~ 808 (1333)
+..
T Consensus 229 ~~~ 231 (269)
T PRK13648 229 IFD 231 (269)
T ss_pred Hhc
Confidence 765
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-34 Score=324.33 Aligned_cols=200 Identities=26% Similarity=0.385 Sum_probs=163.3
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|++++|+.+ ...+++ ||++++||+++|+|+||||||||+++|+|+.+|++|++ .++|
T Consensus 3 ~l~~~~l~~~~~~~-------~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~ 74 (277)
T PRK13652 3 LIETRDLCYSYSGS-------KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSV-LIRGEPITKENIR 74 (277)
T ss_pred eEEEEEEEEEeCCC-------CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE-EECCEECCcCCHH
Confidence 37899999999643 358999 99999999999999999999999999999999999986 6554
Q ss_pred ----eEEEEcCCCC--CCCCCHHHHhccCCc---CCHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHH
Q 000720 660 ----KKAYVPQSSW--IQTGTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1333)
Q Consensus 660 ----~iayv~Q~~~--i~~~Tv~enI~~g~~---~~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQk 726 (1333)
.++|++|+|. +++.|++||+.++.. .+.+ +.++.++.+++.+ ..+..+.+||||||
T Consensus 75 ~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~Gq~ 143 (277)
T PRK13652 75 EVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEE-----------LRDRVPHHLSGGEK 143 (277)
T ss_pred HHHhheEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChh-----------HhcCCcccCCHHHH
Confidence 3799999973 567899999987532 2222 2233344333322 23456789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhh-cCCEEEEEeCCeEEEccChH
Q 000720 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYE 804 (1333)
Q Consensus 727 qRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~~~ 804 (1333)
||++||||++.+|+++||||||++||+.+.+.+.+.+.+...+ +.|+|++||+++++. .||++++|++|++++.|+++
T Consensus 144 qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~ 223 (277)
T PRK13652 144 KRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVE 223 (277)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHH
Confidence 9999999999999999999999999999988777644333333 799999999999985 59999999999999999999
Q ss_pred HHHh
Q 000720 805 DLIA 808 (1333)
Q Consensus 805 ~l~~ 808 (1333)
++.+
T Consensus 224 ~~~~ 227 (277)
T PRK13652 224 EIFL 227 (277)
T ss_pred HHhc
Confidence 8875
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-34 Score=324.93 Aligned_cols=199 Identities=26% Similarity=0.411 Sum_probs=162.2
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++++|+.+ .+.+++ ||++++||+++|+||||||||||+++|+|+++|.+|++ .++|
T Consensus 2 l~~~~l~~~~~~~-------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i-~~~g~~~~~~~~~~ 73 (275)
T PRK13639 2 LETRDLKYSYPDG-------TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV-LIKGEPIKYDKKSL 73 (275)
T ss_pred EEEEEEEEEeCCC-------CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEE-EECCEECccccchH
Confidence 6799999999632 358999 99999999999999999999999999999999999986 5544
Q ss_pred -----eEEEEcCCC--CCCCCCHHHHhccCCc---CCH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHH
Q 000720 660 -----KKAYVPQSS--WIQTGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1333)
Q Consensus 660 -----~iayv~Q~~--~i~~~Tv~enI~~g~~---~~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQ 725 (1333)
.++|++|+| .+++.|++||+.++.. ... ++..+.++.+++. ......+.+|||||
T Consensus 74 ~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~-----------~~~~~~~~~LS~Gq 142 (275)
T PRK13639 74 LEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGME-----------GFENKPPHHLSGGQ 142 (275)
T ss_pred HHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-----------hhhcCChhhCCHHH
Confidence 379999997 4677899999987532 111 1222333333332 12235678999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeEEEccChH
Q 000720 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYE 804 (1333)
Q Consensus 726 kqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~~~ 804 (1333)
|||++||||++.+|++++|||||++||+.++..+.+.+.+...+++|||++||+++.+. .||++++|++|++++.|+++
T Consensus 143 ~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 222 (275)
T PRK13639 143 KKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPK 222 (275)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999988887654433335899999999999986 59999999999999999999
Q ss_pred HHHh
Q 000720 805 DLIA 808 (1333)
Q Consensus 805 ~l~~ 808 (1333)
++..
T Consensus 223 ~~~~ 226 (275)
T PRK13639 223 EVFS 226 (275)
T ss_pred HHhc
Confidence 8865
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=320.72 Aligned_cols=203 Identities=25% Similarity=0.355 Sum_probs=165.8
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCc-----CCCCcEEEECC---
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG--- 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~-----~~~G~~i~~~g--- 659 (1333)
..++++|++++|+. .+.++| ||++++||+++|+||||||||||+++|+|+++ |++|++ .++|
T Consensus 19 ~~l~~~nl~~~~~~--------~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i-~~~g~~~ 89 (267)
T PRK14237 19 IALSTKDLHVYYGK--------KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQI-LYRGIDI 89 (267)
T ss_pred eEEEEeeEEEEECC--------eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEE-EECCEEc
Confidence 46999999999953 368999 99999999999999999999999999999986 478875 4443
Q ss_pred ------------eEEEEcCCCCCCCCCHHHHhccCCcC----CH----HHHHHHHHHcccchHHHhhcCCCccccCCCCC
Q 000720 660 ------------KKAYVPQSSWIQTGTIRENILFGKDM----RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1333)
Q Consensus 660 ------------~iayv~Q~~~i~~~Tv~enI~~g~~~----~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~ 719 (1333)
.++|++|++.++..|++||+.++... ++ ++..++++.+++.+++. +..++.+.
T Consensus 90 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~ 162 (267)
T PRK14237 90 NRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVK-------DDLHKSAL 162 (267)
T ss_pred ccccCChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhh-------hhhcCCcc
Confidence 47999999988888999999875321 11 12233344444432221 23457788
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeEE
Q 000720 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIE 798 (1333)
Q Consensus 720 ~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~ 798 (1333)
+||||||||++||||++++|+++||||||++||+.+...+.+. ++.+.++.|+|++||+++.+. .||++++|++|+++
T Consensus 163 ~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~ 241 (267)
T PRK14237 163 TLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEET-MFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLI 241 (267)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEE
Confidence 9999999999999999999999999999999999998877664 444556789999999999875 59999999999999
Q ss_pred EccChHHHHh
Q 000720 799 QSGKYEDLIA 808 (1333)
Q Consensus 799 ~~g~~~~l~~ 808 (1333)
+.|+++++..
T Consensus 242 ~~g~~~~~~~ 251 (267)
T PRK14237 242 EYDKTRNIFT 251 (267)
T ss_pred EeCCHHHHhc
Confidence 9999998865
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-34 Score=315.23 Aligned_cols=198 Identities=25% Similarity=0.354 Sum_probs=158.5
Q ss_pred CccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC-------
Q 000720 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (1333)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g------- 659 (1333)
+..|+++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 5 ~~~i~~~~l~~~~~~--------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~ 75 (225)
T PRK10247 5 SPLLQLQNVGYLAGD--------AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTL-LFEGEDISTLK 75 (225)
T ss_pred CceEEEeccEEeeCC--------ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeE-EECCEEcCcCC
Confidence 346999999999953 358999 99999999999999999999999999999999999986 5554
Q ss_pred ------eEEEEcCCCCCCCCCHHHHhccCCcCC-----HHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHH
Q 000720 660 ------KKAYVPQSSWIQTGTIRENILFGKDMR-----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728 (1333)
Q Consensus 660 ------~iayv~Q~~~i~~~Tv~enI~~g~~~~-----~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqR 728 (1333)
.++|++|++.+++.|++||+.++..+. .++.++.++..++. .+..+.++.+||||||||
T Consensus 76 ~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LS~G~~qr 145 (225)
T PRK10247 76 PEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALP----------DTILTKNIAELSGGEKQR 145 (225)
T ss_pred HHHHHhccEEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCC----------hHHhcCCcccCCHHHHHH
Confidence 479999999888889999998743211 11222333333332 123456788999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhhcCCEEEEEe-CCeEEEccChH
Q 000720 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLVMK-DGKIEQSGKYE 804 (1333)
Q Consensus 729 v~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~~aD~i~vl~-~G~i~~~g~~~ 804 (1333)
++||||++++|+++||||||++||+.+.+.+.+.+.+... .++|+|++||++++++.||++++|+ ++..+++|+|+
T Consensus 146 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 146 ISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 9999999999999999999999999997777654433333 3789999999999988899999994 66666777764
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=322.08 Aligned_cols=204 Identities=20% Similarity=0.349 Sum_probs=163.8
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCc-----CCCCcEEEECC---
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG--- 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~-----~~~G~~i~~~g--- 659 (1333)
..++++|+++.|+. .+.+++ ||++++||+++|+|+||||||||+++|+|+.+ |++|++ .++|
T Consensus 23 ~~l~~~~l~~~~~~--------~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i-~~~g~~~ 93 (271)
T PRK14238 23 VVFDTQNLNLWYGE--------DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKI-LYRDQNI 93 (271)
T ss_pred eEEEEeeeEEEECC--------cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeE-EECCEEc
Confidence 36999999999963 257999 99999999999999999999999999999987 688976 4443
Q ss_pred ------------eEEEEcCCCCCCCCCHHHHhccCCcC----CHHHH----HHHHHHcccchHHHhhcCCCccccCCCCC
Q 000720 660 ------------KKAYVPQSSWIQTGTIRENILFGKDM----RQSFY----EEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1333)
Q Consensus 660 ------------~iayv~Q~~~i~~~Tv~enI~~g~~~----~~~~~----~~v~~~~~l~~d~~~~~~g~~t~ig~~g~ 719 (1333)
.++|++|++.++..|++||+.++... ++... .+.++..++..++. ...++++.
T Consensus 94 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~-------~~~~~~~~ 166 (271)
T PRK14238 94 FDKSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELK-------DRLHDNAY 166 (271)
T ss_pred ccccccHHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHH-------HHHhcCcc
Confidence 47999999988878999999875321 11111 11222222211121 23456788
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeEE
Q 000720 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIE 798 (1333)
Q Consensus 720 ~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~ 798 (1333)
+||||||||++||||++.+|+++||||||++||+.+.+.+.+ +++.+.+++|+|++||+++++. .||++++|++|+++
T Consensus 167 ~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~ 245 (271)
T PRK14238 167 GLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEE-LVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVN 245 (271)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHH-HHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999887766 4555556799999999999976 49999999999999
Q ss_pred EccChHHHHhh
Q 000720 799 QSGKYEDLIAD 809 (1333)
Q Consensus 799 ~~g~~~~l~~~ 809 (1333)
+.|+++++..+
T Consensus 246 ~~g~~~~~~~~ 256 (271)
T PRK14238 246 EYDDTDKIFSN 256 (271)
T ss_pred EeCCHHHHHcC
Confidence 99999988653
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-34 Score=321.18 Aligned_cols=198 Identities=22% Similarity=0.346 Sum_probs=160.9
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|+++.|+. .+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 2 l~~~~l~~~~~~--------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~~~~~~~~~ 72 (256)
T TIGR03873 2 LRLSRVSWSAGG--------RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTV-DLAGVDLHGLSRRA 72 (256)
T ss_pred ceEEeEEEEECC--------EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEE-EECCEEcccCCHHH
Confidence 678999999963 368999 99999999999999999999999999999999999986 6654
Q ss_pred ---eEEEEcCCCC-CCCCCHHHHhccCCc-C------C-HH---HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChH
Q 000720 660 ---KKAYVPQSSW-IQTGTIRENILFGKD-M------R-QS---FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1333)
Q Consensus 660 ---~iayv~Q~~~-i~~~Tv~enI~~g~~-~------~-~~---~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGG 724 (1333)
.++|++|++. .+..|++||+.++.. . . .+ +..+.++.+++. .....++.+||||
T Consensus 73 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G 141 (256)
T TIGR03873 73 RARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELS-----------HLADRDMSTLSGG 141 (256)
T ss_pred HhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcH-----------hhhcCCcccCCHH
Confidence 3799999985 456899999987631 1 0 11 122223332221 2234677899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeEEEccCh
Q 000720 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKY 803 (1333)
Q Consensus 725 QkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~~ 803 (1333)
||||++||||++.+|+++||||||++||+.....+.+.+.+...+++|+|++||+++.+. .||+|++|++|++++.|+.
T Consensus 142 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 221 (256)
T TIGR03873 142 ERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPP 221 (256)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCH
Confidence 999999999999999999999999999999988777644333335789999999999985 5999999999999999999
Q ss_pred HHHHh
Q 000720 804 EDLIA 808 (1333)
Q Consensus 804 ~~l~~ 808 (1333)
+++..
T Consensus 222 ~~~~~ 226 (256)
T TIGR03873 222 REVLT 226 (256)
T ss_pred HHhhC
Confidence 88764
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-34 Score=299.44 Aligned_cols=160 Identities=28% Similarity=0.453 Sum_probs=142.3
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--eEEEEcCC
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVPQS 667 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--~iayv~Q~ 667 (1333)
|+++|++++|+.+ ++.+++ |+++++||+++|+||||||||||+++|+|+.+|++|++ .+++ +++|++|+
T Consensus 1 i~~~~~~~~~~~~-------~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~~~~~i~~~~q~ 72 (166)
T cd03223 1 IELENLSLATPDG-------RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI-GMPEGEDLLFLPQR 72 (166)
T ss_pred CEEEEEEEEcCCC-------CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE-EECCCceEEEECCC
Confidence 4689999999632 358999 99999999999999999999999999999999999996 7765 79999999
Q ss_pred CCCCCCCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCC
Q 000720 668 SWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDP 747 (1333)
Q Consensus 668 ~~i~~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP 747 (1333)
+.+++.|++||+.++ ++.+||||||||++||||++++|+++|||||
T Consensus 73 ~~~~~~tv~~nl~~~----------------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEP 118 (166)
T cd03223 73 PYLPLGTLREQLIYP----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEA 118 (166)
T ss_pred CccccccHHHHhhcc----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 988889999999763 2468999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCC
Q 000720 748 FSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDG 795 (1333)
Q Consensus 748 ~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G 795 (1333)
|++||+++.+.+.+. ++.. ++|+|++||+.+....||++++|++|
T Consensus 119 t~~LD~~~~~~l~~~-l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~ 163 (166)
T cd03223 119 TSALDEESEDRLYQL-LKEL--GITVISVGHRPSLWKFHDRVLDLDGE 163 (166)
T ss_pred ccccCHHHHHHHHHH-HHHh--CCEEEEEeCChhHHhhCCEEEEEcCC
Confidence 999999998877764 3333 68999999999887779999999875
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=320.69 Aligned_cols=197 Identities=24% Similarity=0.345 Sum_probs=158.2
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCC---CcEEEECC------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRIS---GAAIKVHG------ 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~---G~~i~~~g------ 659 (1333)
.++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+++|++ |++ .++|
T Consensus 4 ~l~~~nl~~~~~~--------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i-~~~g~~~~~~ 74 (262)
T PRK09984 4 IIRVEKLAKTFNQ--------HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHI-ELLGRTVQRE 74 (262)
T ss_pred EEEEeeEEEEeCC--------eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEE-EECCEecccc
Confidence 5889999999963 358999 99999999999999999999999999999998864 765 4443
Q ss_pred ------------eEEEEcCCCCCCC-CCHHHHhccCCcC------------CH---HHHHHHHHHcccchHHHhhcCCCc
Q 000720 660 ------------KKAYVPQSSWIQT-GTIRENILFGKDM------------RQ---SFYEEVLEGCALNQDIEMWADGDL 711 (1333)
Q Consensus 660 ------------~iayv~Q~~~i~~-~Tv~enI~~g~~~------------~~---~~~~~v~~~~~l~~d~~~~~~g~~ 711 (1333)
+++|+||++.++. .|++||+.++... .+ .+.++.++..++.
T Consensus 75 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------- 143 (262)
T PRK09984 75 GRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMV----------- 143 (262)
T ss_pred cccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCH-----------
Confidence 3799999987655 6999999876321 11 1122223222221
Q ss_pred cccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhh-cCCEE
Q 000720 712 SVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLV 789 (1333)
Q Consensus 712 t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~-~aD~i 789 (1333)
...+.++.+||||||||++||||++.+|+++||||||++||++..+.+.+.+.+... +++|+|++||+++.+. .||+|
T Consensus 144 ~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i 223 (262)
T PRK09984 144 HFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERI 223 (262)
T ss_pred HHHhCCccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 123467789999999999999999999999999999999999998887765433333 3799999999999865 59999
Q ss_pred EEEeCCeEEEccChHHH
Q 000720 790 LVMKDGKIEQSGKYEDL 806 (1333)
Q Consensus 790 ~vl~~G~i~~~g~~~~l 806 (1333)
++|++|++++.|+++++
T Consensus 224 ~~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 224 VALRQGHVFYDGSSQQF 240 (262)
T ss_pred EEEECCEEEEeCCHHHh
Confidence 99999999999999886
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=313.89 Aligned_cols=195 Identities=24% Similarity=0.287 Sum_probs=159.6
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------e
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------K 660 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------~ 660 (1333)
++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++| .
T Consensus 1 l~l~~v~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~~~~~~~~~~~~ 71 (223)
T TIGR03740 1 LETKNLSKRFGK--------QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEI-IFDGHPWTRKDLHK 71 (223)
T ss_pred CEEEeEEEEECC--------EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEecccccccc
Confidence 468899999863 358999 99999999999999999999999999999999999986 6554 4
Q ss_pred EEEEcCCCCCC-CCCHHHHhccCCc---CCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHc
Q 000720 661 KAYVPQSSWIQ-TGTIRENILFGKD---MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY 736 (1333)
Q Consensus 661 iayv~Q~~~i~-~~Tv~enI~~g~~---~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~ 736 (1333)
++|++|++.++ ..|++||+.++.. .++.+..+.++..++.+. .+.++.+||||||||++||||++
T Consensus 72 ~~~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~~rv~laral~ 140 (223)
T TIGR03740 72 IGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNT-----------GKKKAKQFSLGMKQRLGIAIALL 140 (223)
T ss_pred EEEEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHH-----------HhhhHhhCCHHHHHHHHHHHHHh
Confidence 79999998765 4799999976432 233344455555554322 23466799999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeEEEccChHH
Q 000720 737 SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYED 805 (1333)
Q Consensus 737 ~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~~~~ 805 (1333)
.+|+++||||||++||+.+.+.+.+.+.+...+++|+|++||+++++. .||++++|++|++++.|++++
T Consensus 141 ~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 141 NHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred cCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 999999999999999999988776644433345789999999999985 599999999999999988654
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=317.69 Aligned_cols=204 Identities=22% Similarity=0.342 Sum_probs=163.3
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCc--C---CCCcEEEECC---
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP--R---ISGAAIKVHG--- 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~--~---~~G~~i~~~g--- 659 (1333)
+.++++|++++|+. .+.++| ||+|++||+++|+|+||||||||+++|+|+.+ | ++|++ .++|
T Consensus 3 ~~l~~~nl~~~~~~--------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v-~~~g~~i 73 (252)
T PRK14256 3 NKVKLEQLNVHFGK--------NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKI-LLDDTDI 73 (252)
T ss_pred cEEEEEEEEEEeCC--------eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEE-EECCEEc
Confidence 46899999999963 358999 99999999999999999999999999999986 3 57875 4433
Q ss_pred ------------eEEEEcCCCCCCC-CCHHHHhccCCc----CCH----HHHHHHHHHcccchHHHhhcCCCccccCCCC
Q 000720 660 ------------KKAYVPQSSWIQT-GTIRENILFGKD----MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1333)
Q Consensus 660 ------------~iayv~Q~~~i~~-~Tv~enI~~g~~----~~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g 718 (1333)
.++|++|++.++. .|++||+.++.. .+. ++..+.++.+++...+. ...+..+
T Consensus 74 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~ 146 (252)
T PRK14256 74 YDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVK-------DRLKSNA 146 (252)
T ss_pred ccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCc
Confidence 3799999988765 699999986521 111 12233344444432221 1234568
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeE
Q 000720 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKI 797 (1333)
Q Consensus 719 ~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i 797 (1333)
.+||||||||++||||++.+|+++||||||++||+.+.+.+.+ +++.+.+++|+|++||+++++. .||++++|++|++
T Consensus 147 ~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~-~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i 225 (252)
T PRK14256 147 MELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEE-LIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDL 225 (252)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEE
Confidence 8999999999999999999999999999999999999887766 4555556789999999999985 5999999999999
Q ss_pred EEccChHHHHhh
Q 000720 798 EQSGKYEDLIAD 809 (1333)
Q Consensus 798 ~~~g~~~~l~~~ 809 (1333)
++.|+.+++..+
T Consensus 226 ~~~~~~~~~~~~ 237 (252)
T PRK14256 226 VECGETKKIFTT 237 (252)
T ss_pred EEeCCHHHHHhC
Confidence 999999988753
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=317.99 Aligned_cols=202 Identities=24% Similarity=0.346 Sum_probs=162.6
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcC-----CCCcEEEECC----
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG---- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~-----~~G~~i~~~g---- 659 (1333)
.++++|+++.|+. .+.+++ ||++++||+++|+||||||||||+++|+|+.+| ++|++ .++|
T Consensus 3 ~l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v-~~~g~~~~ 73 (249)
T PRK14253 3 KFNIENLDLFYGE--------NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKL-TMDGEDIY 73 (249)
T ss_pred eEEEeccEEEECC--------eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEE-EECCEEcc
Confidence 4789999999963 358999 999999999999999999999999999999886 48875 5443
Q ss_pred ----------eEEEEcCCCCCCCCCHHHHhccCCcC---C-HH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCC
Q 000720 660 ----------KKAYVPQSSWIQTGTIRENILFGKDM---R-QS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1333)
Q Consensus 660 ----------~iayv~Q~~~i~~~Tv~enI~~g~~~---~-~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~L 721 (1333)
.++|++|++.++..|++||+.++... . +. +..+.++..++.+++. +..++.+.+|
T Consensus 74 ~~~~~~~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~L 146 (249)
T PRK14253 74 GNIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVK-------DRLKSHAFGL 146 (249)
T ss_pred cccchHHHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhh-------HHhhcCcccC
Confidence 37999999988779999999876321 1 11 1122233333332221 2345678899
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEc
Q 000720 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQS 800 (1333)
Q Consensus 722 SGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~ 800 (1333)
|||||||++||||++.+|+++||||||++||+.+.+.+.+ +++.+.+++|+|++||+++.+.. ||++++|++|++++.
T Consensus 147 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~ 225 (249)
T PRK14253 147 SGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEE-LMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEH 225 (249)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999877765 55555557899999999999765 999999999999999
Q ss_pred cChHHHHh
Q 000720 801 GKYEDLIA 808 (1333)
Q Consensus 801 g~~~~l~~ 808 (1333)
|+.+++.+
T Consensus 226 g~~~~~~~ 233 (249)
T PRK14253 226 DDTQVIFS 233 (249)
T ss_pred CCHHHHHc
Confidence 99888754
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=312.99 Aligned_cols=196 Identities=26% Similarity=0.397 Sum_probs=159.2
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++++|+.. + .+ ||++++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 2 l~~~~l~~~~~~~--------~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 70 (232)
T PRK10771 2 LKLTDITWLYHHL--------P--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSL-TLNGQDHTTTPPSR 70 (232)
T ss_pred eEEEEEEEEECCc--------c--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCeecCcCChhh
Confidence 6799999999632 1 27 99999999999999999999999999999999999986 5554
Q ss_pred -eEEEEcCCCCCCC-CCHHHHhccCCcC----CH---HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHH
Q 000720 660 -KKAYVPQSSWIQT-GTIRENILFGKDM----RQ---SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1333)
Q Consensus 660 -~iayv~Q~~~i~~-~Tv~enI~~g~~~----~~---~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~ 730 (1333)
.++|++|++.++. .|++||+.++... .+ ++..+.++..++. ..++..+.+||||||||++
T Consensus 71 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv~ 139 (232)
T PRK10771 71 RPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIE-----------DLLARLPGQLSGGQRQRVA 139 (232)
T ss_pred ccEEEEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcH-----------HHHhCCcccCCHHHHHHHH
Confidence 3799999987765 5999999875311 11 1223333333332 2234567799999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChHHHHh
Q 000720 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 731 LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
||||++++|+++||||||++||+.+++.+.+.+.+... .++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 140 laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~ 219 (232)
T PRK10771 140 LARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLS 219 (232)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999998877765443333 37899999999999865 99999999999999999988875
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=313.37 Aligned_cols=190 Identities=23% Similarity=0.288 Sum_probs=152.4
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|+++.|+.+ .+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 2 l~~~~l~~~~~~~-------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~i~~~~~~~ 73 (222)
T PRK10908 2 IRFEHVSKAYLGG-------RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKI-WFSGHDITRLKNRE 73 (222)
T ss_pred EEEEeeEEEecCC-------CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEEcccCChhH
Confidence 6789999999532 358999 99999999999999999999999999999999999986 5543
Q ss_pred ------eEEEEcCCCCC-CCCCHHHHhccCCc---CCHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHH
Q 000720 660 ------KKAYVPQSSWI-QTGTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1333)
Q Consensus 660 ------~iayv~Q~~~i-~~~Tv~enI~~g~~---~~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQ 725 (1333)
.++|++|+|.+ ++.|++||+.++.. .+.. +.++.++..++.+ ...+.+.+|||||
T Consensus 74 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~ 142 (222)
T PRK10908 74 VPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLD-----------KAKNFPIQLSGGE 142 (222)
T ss_pred HHHHHhheEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChh-----------hhhCCchhCCHHH
Confidence 37999999875 57899999987532 1111 1122233222221 2345678999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEE
Q 000720 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1333)
Q Consensus 726 kqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~ 799 (1333)
|||++||||++.+|+++||||||++||+.+.+.+.+.+.+...+++|+|++||+++++.. ||+|++|++|+++.
T Consensus 143 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 143 QQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 999999999999999999999999999999887776443333457899999999999875 99999999999863
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-34 Score=302.00 Aligned_cols=159 Identities=34% Similarity=0.554 Sum_probs=141.5
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++++|+.. ..+.+++ |+++++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 1 i~~~~l~~~~~~~------~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 73 (173)
T cd03246 1 LEVENVSFRYPGA------EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRV-RLDGADISQWDPNE 73 (173)
T ss_pred CEEEEEEEEcCCC------CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeE-EECCEEcccCCHHH
Confidence 4689999999743 2468999 99999999999999999999999999999999999986 5554
Q ss_pred ---eEEEEcCCCCCCCCCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHc
Q 000720 660 ---KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY 736 (1333)
Q Consensus 660 ---~iayv~Q~~~i~~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~ 736 (1333)
+++|++|++++++.|++||+ ||||||||++||||++
T Consensus 74 ~~~~i~~~~q~~~~~~~tv~~~l-----------------------------------------LS~G~~qrv~la~al~ 112 (173)
T cd03246 74 LGDHVGYLPQDDELFSGSIAENI-----------------------------------------LSGGQRQRLGLARALY 112 (173)
T ss_pred HHhheEEECCCCccccCcHHHHC-----------------------------------------cCHHHHHHHHHHHHHh
Confidence 47999999998888999998 9999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeE
Q 000720 737 SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKI 797 (1333)
Q Consensus 737 ~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i 797 (1333)
++|+++||||||++||+++.+.+.+.+.+...+++|+|++||+++.+..||++++|++|++
T Consensus 113 ~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 113 GNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred cCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 9999999999999999999888876544333458899999999998888999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=318.12 Aligned_cols=202 Identities=29% Similarity=0.400 Sum_probs=162.0
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcC-----CCCcEEEECC----
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG---- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~-----~~G~~i~~~g---- 659 (1333)
.++++|+++.|++ .+.+++ ||++++||+++|+||||||||||+++|+|+.+| ++|++ .++|
T Consensus 3 ~l~~~~l~~~~~~--------~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i-~i~g~~~~ 73 (250)
T PRK14262 3 IIEIENFSAYYGE--------KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKI-YFKGQDIY 73 (250)
T ss_pred eEEEEeeEEEeCC--------ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEE-EECCEEcc
Confidence 4889999999963 357999 999999999999999999999999999999874 78875 4433
Q ss_pred -----------eEEEEcCCCCCCCCCHHHHhccCCcC----CHHHH----HHHHHHcccchHHHhhcCCCccccCCCCCC
Q 000720 660 -----------KKAYVPQSSWIQTGTIRENILFGKDM----RQSFY----EEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1333)
Q Consensus 660 -----------~iayv~Q~~~i~~~Tv~enI~~g~~~----~~~~~----~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~ 720 (1333)
.++|++|++.++..|++||+.++... ..... ++.++..++.+++. +..++++.+
T Consensus 74 ~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~ 146 (250)
T PRK14262 74 DPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVK-------SELNKPGTR 146 (250)
T ss_pred cchhhHHHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhH-------HHHhCChhh
Confidence 48999999988789999999875321 11111 22222223322211 224567889
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeEEE
Q 000720 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQ 799 (1333)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~ 799 (1333)
||||||||++||||++.+|+++||||||++||+.+...+.+ +++...+++|+|++||+++.+. .||++++|++|+++.
T Consensus 147 LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~ 225 (250)
T PRK14262 147 LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEK-LLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIE 225 (250)
T ss_pred cCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHH-HHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999887765 4555556789999999999865 599999999999999
Q ss_pred ccChHHHHh
Q 000720 800 SGKYEDLIA 808 (1333)
Q Consensus 800 ~g~~~~l~~ 808 (1333)
.|+++++.+
T Consensus 226 ~g~~~~~~~ 234 (250)
T PRK14262 226 YGPTREIVE 234 (250)
T ss_pred ecCHHHHHh
Confidence 999988865
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-34 Score=312.49 Aligned_cols=187 Identities=32% Similarity=0.366 Sum_probs=150.6
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 1 l~~~~l~~~~~~--------~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 71 (213)
T cd03262 1 IEIKNLHKSFGD--------FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTI-IIDGLKLTDDKKNI 71 (213)
T ss_pred CEEEEEEEEECC--------eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEECCccchhH
Confidence 468899999964 358999 99999999999999999999999999999999999986 5544
Q ss_pred -----eEEEEcCCCCCCC-CCHHHHhccCCc----CCHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHH
Q 000720 660 -----KKAYVPQSSWIQT-GTIRENILFGKD----MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1333)
Q Consensus 660 -----~iayv~Q~~~i~~-~Tv~enI~~g~~----~~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQ 725 (1333)
.++|++|++.++. .|++||+.++.. .+.+ +.++.++.+++ ......++.+|||||
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~ 140 (213)
T cd03262 72 NELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGL-----------ADKADAYPAQLSGGQ 140 (213)
T ss_pred HHHHhcceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCC-----------HhHhhhCccccCHHH
Confidence 3799999998764 799999987531 1211 12222333322 223446778999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeE
Q 000720 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKI 797 (1333)
Q Consensus 726 kqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i 797 (1333)
|||++||||++++|+++||||||++||+.+.+.+.+.+.+...+++|+|++||+++.+.. ||++++|++|++
T Consensus 141 ~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 141 QQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999887776544333457999999999999865 999999999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=318.72 Aligned_cols=193 Identities=26% Similarity=0.407 Sum_probs=156.0
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--------eE
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------KK 661 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------~i 661 (1333)
++++|+++.|+. .+.++| ||++++||+++|+||||||||||+++|+|+.+|++|++ .++| ++
T Consensus 2 l~~~~l~~~~~~--------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~ 72 (255)
T PRK11248 2 LQISHLYADYGG--------KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSI-TLDGKPVEGPGAER 72 (255)
T ss_pred EEEEEEEEEeCC--------eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEECCCCCCcE
Confidence 678999999853 358999 99999999999999999999999999999999999986 6655 37
Q ss_pred EEEcCCCCCCC-CCHHHHhccCCc---CCH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHH
Q 000720 662 AYVPQSSWIQT-GTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733 (1333)
Q Consensus 662 ayv~Q~~~i~~-~Tv~enI~~g~~---~~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LAR 733 (1333)
+|++|++.++. .|++||+.++.. ... ++..+.++..++. .....++.+||||||||++|||
T Consensus 73 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LSgGq~qrl~lar 141 (255)
T PRK11248 73 GVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLE-----------GAEKRYIWQLSGGQRQRVGIAR 141 (255)
T ss_pred EEEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCh-----------hHhhCChhhCCHHHHHHHHHHH
Confidence 99999987665 699999987532 111 1223333433332 1233567899999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhhc-CCEEEEEe--CCeEEEccCh
Q 000720 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMK--DGKIEQSGKY 803 (1333)
Q Consensus 734 Al~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~~-aD~i~vl~--~G~i~~~g~~ 803 (1333)
|++.+|+++||||||++||+.+.+.+.+.+.+... +++|+|++||+++.+.. ||+|++|+ +|++++.++.
T Consensus 142 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 142 ALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 99999999999999999999998887765433323 47999999999999865 99999998 5999987654
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=318.18 Aligned_cols=202 Identities=26% Similarity=0.356 Sum_probs=162.3
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcC-----CCCcEEEECC----
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG---- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~-----~~G~~i~~~g---- 659 (1333)
.|+++|++++|+. ...|+| ||++++||+++|+||||||||||+++|+|+.++ ++|++ .++|
T Consensus 6 ~i~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i-~~~g~~~~ 76 (253)
T PRK14261 6 ILSTKNLNLWYGE--------KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDI-LYNGENIM 76 (253)
T ss_pred eEEEeeeEEEECC--------eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEE-EECCEEcc
Confidence 5899999999963 358999 999999999999999999999999999998753 47875 4432
Q ss_pred -----------eEEEEcCCCCCCCCCHHHHhccCCcCC----HH----HHHHHHHHcccchHHHhhcCCCccccCCCCCC
Q 000720 660 -----------KKAYVPQSSWIQTGTIRENILFGKDMR----QS----FYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1333)
Q Consensus 660 -----------~iayv~Q~~~i~~~Tv~enI~~g~~~~----~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~ 720 (1333)
.++|++|++.+++.|++||+.++.... .. +..+.++..++.+++ .+..++.+.+
T Consensus 77 ~~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~ 149 (253)
T PRK14261 77 DSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEV-------KDRLHDSALS 149 (253)
T ss_pred ccccchhhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhh-------HHHhhcChhh
Confidence 479999999888789999999864321 11 111222222232221 1235678899
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeEEE
Q 000720 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQ 799 (1333)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~ 799 (1333)
||||||||++||||++.+|+++||||||++||+.+.+.+.+ +++.+.+++|+|++||+++.+. .||++++|++|++++
T Consensus 150 LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~-~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~ 228 (253)
T PRK14261 150 LSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIED-LIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIE 228 (253)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999887765 4555555789999999999986 499999999999999
Q ss_pred ccChHHHHh
Q 000720 800 SGKYEDLIA 808 (1333)
Q Consensus 800 ~g~~~~l~~ 808 (1333)
.|+.+++..
T Consensus 229 ~g~~~~~~~ 237 (253)
T PRK14261 229 FDKTTQIFE 237 (253)
T ss_pred cCCHHHHHh
Confidence 999988865
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=326.48 Aligned_cols=217 Identities=20% Similarity=0.279 Sum_probs=168.2
Q ss_pred ccEEEeeeEEEcCCccccc--CCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC------
Q 000720 589 VAIDIEAGEYAWDAREENF--KKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------ 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~--~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g------ 659 (1333)
..++++|.+++|+...... ......+++ ||+|++||+++|+|+||||||||+++|+|+++|++|++ .++|
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i-~~~g~~l~~~ 82 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGEL-YYQGQDLLKA 82 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEE-EECCEEcCcC
Confidence 3589999999997431000 012467999 99999999999999999999999999999999999986 5543
Q ss_pred ----------eEEEEcCCCC--C-CCCCHHHHhccCC----cCCH----HHHHHHHHHcccchHHHhhcCCCccccCCCC
Q 000720 660 ----------KKAYVPQSSW--I-QTGTIRENILFGK----DMRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1333)
Q Consensus 660 ----------~iayv~Q~~~--i-~~~Tv~enI~~g~----~~~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g 718 (1333)
+++|++|+|. + +..|+.+|+..+. ...+ ++..+.++.+++..+ ..+..+
T Consensus 83 ~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~----------~~~~~p 152 (327)
T PRK11308 83 DPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPE----------HYDRYP 152 (327)
T ss_pred CHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChH----------HhcCCC
Confidence 4899999983 3 3469999986421 1121 222334444444211 234678
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhhc-CCEEEEEeCCe
Q 000720 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGK 796 (1333)
Q Consensus 719 ~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~~-aD~i~vl~~G~ 796 (1333)
.+||||||||++|||||+.+|+++|+||||++||+.++.++++.+.+... .+.|+|+||||++.+.. ||+|++|++|+
T Consensus 153 ~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ 232 (327)
T PRK11308 153 HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGR 232 (327)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 89999999999999999999999999999999999999988875544333 37899999999999875 99999999999
Q ss_pred EEEccChHHHHhhcchHHHH
Q 000720 797 IEQSGKYEDLIADQNSELVR 816 (1333)
Q Consensus 797 i~~~g~~~~l~~~~~~~~~~ 816 (1333)
|++.|+.+++.++....+.+
T Consensus 233 ive~g~~~~~~~~p~hpyt~ 252 (327)
T PRK11308 233 CVEKGTKEQIFNNPRHPYTQ 252 (327)
T ss_pred EEEECCHHHHhcCCCCHHHH
Confidence 99999999998754444443
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=320.01 Aligned_cols=204 Identities=27% Similarity=0.407 Sum_probs=164.3
Q ss_pred CccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcC-----CCCcEEEECC--
Q 000720 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG-- 659 (1333)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~-----~~G~~i~~~g-- 659 (1333)
...++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+.++ ++|++ .++|
T Consensus 23 ~~~l~~~nl~~~~~~--------~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i-~i~g~~ 93 (272)
T PRK14236 23 QTALEVRNLNLFYGD--------KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEI-RLDGQN 93 (272)
T ss_pred CcEEEEEEEEEEECC--------eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEE-EECCEE
Confidence 446999999999953 258999 999999999999999999999999999999874 78975 4432
Q ss_pred -------------eEEEEcCCCCCCCCCHHHHhccCCcCC----H----HHHHHHHHHcccchHHHhhcCCCccccCCCC
Q 000720 660 -------------KKAYVPQSSWIQTGTIRENILFGKDMR----Q----SFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1333)
Q Consensus 660 -------------~iayv~Q~~~i~~~Tv~enI~~g~~~~----~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g 718 (1333)
.++|++|++.+++.|++||+.++.... + ++.++.++..++.+++. +..++++
T Consensus 94 i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~ 166 (272)
T PRK14236 94 IYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK-------DRLHENA 166 (272)
T ss_pred CcccccCHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHH-------HHhhCCc
Confidence 479999999888789999998753211 1 11223333333332221 2345778
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeE
Q 000720 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKI 797 (1333)
Q Consensus 719 ~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i 797 (1333)
.+||||||||++||||++++|+++||||||++||+.+...+.+ +++.+.+++|+|++||+++++. .||++++|++|++
T Consensus 167 ~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~-~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i 245 (272)
T PRK14236 167 FGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEE-LITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKL 245 (272)
T ss_pred ccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999998777765 4444455789999999999875 5999999999999
Q ss_pred EEccChHHHHh
Q 000720 798 EQSGKYEDLIA 808 (1333)
Q Consensus 798 ~~~g~~~~l~~ 808 (1333)
++.|+++++.+
T Consensus 246 ~~~g~~~~~~~ 256 (272)
T PRK14236 246 VEYGDTDTLFT 256 (272)
T ss_pred EecCCHHHHhc
Confidence 99999988865
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=321.17 Aligned_cols=204 Identities=25% Similarity=0.383 Sum_probs=162.9
Q ss_pred CccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCc-----CCCCcEEEECC--
Q 000720 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG-- 659 (1333)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~-----~~~G~~i~~~g-- 659 (1333)
+..++++|++++|+. .+.+++ ||+|++||+++|+||||||||||+++|+|+++ |++|++ .++|
T Consensus 37 ~~~l~i~~l~~~~~~--------~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I-~i~G~~ 107 (285)
T PRK14254 37 ETVIEARDLNVFYGD--------EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGEL-TFRGKN 107 (285)
T ss_pred CceEEEEEEEEEECC--------EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEE-EECCEE
Confidence 446999999999963 358999 99999999999999999999999999999987 578975 4433
Q ss_pred -------------eEEEEcCCCCCCCCCHHHHhccCCcC---C---HHHHHHHHHHcccchHHHhhcCCCccccCCCCCC
Q 000720 660 -------------KKAYVPQSSWIQTGTIRENILFGKDM---R---QSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1333)
Q Consensus 660 -------------~iayv~Q~~~i~~~Tv~enI~~g~~~---~---~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~ 720 (1333)
+++|++|++.++..|++||+.++... . .++.++.++..++...+. ...++++.+
T Consensus 108 i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~ 180 (285)
T PRK14254 108 VYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVK-------DQLDSSGLD 180 (285)
T ss_pred ccccccchHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhH-------HHHhCCccc
Confidence 47999999988778999999875321 1 122233333333322221 123567889
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEE-EEeCCeEE
Q 000720 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVL-VMKDGKIE 798 (1333)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~-vl~~G~i~ 798 (1333)
||||||||++||||++++|+++||||||++||+.+.+.+.+ .++.+.+++|+|++||+++++.. ||+++ +|++|+|+
T Consensus 181 LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~-~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~ 259 (285)
T PRK14254 181 LSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIED-LIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELV 259 (285)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEE
Confidence 99999999999999999999999999999999999887765 45555456899999999999865 99975 57999999
Q ss_pred EccChHHHHh
Q 000720 799 QSGKYEDLIA 808 (1333)
Q Consensus 799 ~~g~~~~l~~ 808 (1333)
+.|+++++..
T Consensus 260 ~~g~~~~~~~ 269 (285)
T PRK14254 260 EFDDTDKIFE 269 (285)
T ss_pred EeCCHHHHHh
Confidence 9999888765
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=331.92 Aligned_cols=198 Identities=22% Similarity=0.379 Sum_probs=160.2
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
+++ |.+++|... .+ + ||++++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 2 l~~-~l~k~~~~~---------~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I-~~~g~~~~~~~~~~ 69 (352)
T PRK11144 2 LEL-NFKQQLGDL---------CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRI-VLNGRVLFDAEKGI 69 (352)
T ss_pred eEE-EEEEEeCCE---------EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEEcccccccc
Confidence 345 777777532 12 7 99999999999999999999999999999999999986 4433
Q ss_pred -------eEEEEcCCCCCC-CCCHHHHhccCCc-CCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHH
Q 000720 660 -------KKAYVPQSSWIQ-TGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1333)
Q Consensus 660 -------~iayv~Q~~~i~-~~Tv~enI~~g~~-~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~ 730 (1333)
+++|++|++.++ ..|++||+.++.. ...++.+++++..++.+ ..++++.+||||||||++
T Consensus 70 ~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgGq~qRva 138 (352)
T PRK11144 70 CLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEP-----------LLDRYPGSLSGGEKQRVA 138 (352)
T ss_pred ccchhhCCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCch-----------hhhCCcccCCHHHHHHHH
Confidence 479999999876 4799999998743 22334445555554432 234567899999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChHHHHh
Q 000720 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 731 LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
||||++.+|+++||||||++||+..++.+.+.+.+...+ ++|+|+||||++++.. ||++++|++|++++.|+++++..
T Consensus 139 laraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~ 218 (352)
T PRK11144 139 IGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWA 218 (352)
T ss_pred HHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHh
Confidence 999999999999999999999999988887654433333 7899999999998754 99999999999999999999987
Q ss_pred hcc
Q 000720 809 DQN 811 (1333)
Q Consensus 809 ~~~ 811 (1333)
++.
T Consensus 219 ~p~ 221 (352)
T PRK11144 219 SSA 221 (352)
T ss_pred Ccc
Confidence 443
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=316.99 Aligned_cols=198 Identities=21% Similarity=0.208 Sum_probs=154.8
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCC--cCCCCcEEEECC--------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEI--PRISGAAIKVHG-------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~--~~~~G~~i~~~g-------- 659 (1333)
++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+. +|++|++ .++|
T Consensus 1 l~~~~l~~~~~~--------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i-~~~g~~~~~~~~ 71 (243)
T TIGR01978 1 LKIKDLHVSVED--------KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTI-LFKGQDLLELEP 71 (243)
T ss_pred CeEeeEEEEECC--------EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceE-EECCEecCCCCH
Confidence 468999999963 358999 9999999999999999999999999999995 7899986 5554
Q ss_pred ------eEEEEcCCCCCCC-CCHHHHhccCCcC----------CH----HHHHHHHHHcccchHHHhhcCCCccccCCCC
Q 000720 660 ------KKAYVPQSSWIQT-GTIRENILFGKDM----------RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1333)
Q Consensus 660 ------~iayv~Q~~~i~~-~Tv~enI~~g~~~----------~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g 718 (1333)
.++|++|++.++. .|++||+.+.... +. ++..+.++..++..+ ..+.+.
T Consensus 72 ~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~ 141 (243)
T TIGR01978 72 DERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEE----------FLNRSV 141 (243)
T ss_pred HHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchh----------hccccc
Confidence 2689999987654 5999999764211 11 111222222222211 122344
Q ss_pred C-CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc--CCEEEEEeCC
Q 000720 719 I-NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA--ADLVLVMKDG 795 (1333)
Q Consensus 719 ~-~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~--aD~i~vl~~G 795 (1333)
. +||||||||++||||++.+|+++||||||++||+.+.+.+.+.+.+...+++|||++||+++.+.. ||++++|++|
T Consensus 142 ~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G 221 (243)
T TIGR01978 142 NEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDG 221 (243)
T ss_pred ccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCC
Confidence 4 599999999999999999999999999999999999888776544333457999999999999864 7999999999
Q ss_pred eEEEccChHHHH
Q 000720 796 KIEQSGKYEDLI 807 (1333)
Q Consensus 796 ~i~~~g~~~~l~ 807 (1333)
++++.|+++++.
T Consensus 222 ~i~~~g~~~~~~ 233 (243)
T TIGR01978 222 RIVKSGDVELAK 233 (243)
T ss_pred EEEEecCHHHhc
Confidence 999999887553
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=318.24 Aligned_cols=202 Identities=22% Similarity=0.356 Sum_probs=161.1
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCc-----CCCCcEEEECC-----
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG----- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~-----~~~G~~i~~~g----- 659 (1333)
-+++|+++.|+. .+.+++ ||++++||+++|+|+||||||||+++|+|+.+ |++|++ .++|
T Consensus 6 ~~~~~l~~~~~~--------~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i-~~~g~~i~~ 76 (251)
T PRK14244 6 ASVKNLNLWYGS--------KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGEL-DIDGIDVYS 76 (251)
T ss_pred EEeeeEEEEECC--------eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEE-EECCEehHh
Confidence 467899999853 368999 99999999999999999999999999999986 468875 5443
Q ss_pred ----------eEEEEcCCCCCCCCCHHHHhccCCcC-----CHHH----HHHHHHHcccchHHHhhcCCCccccCCCCCC
Q 000720 660 ----------KKAYVPQSSWIQTGTIRENILFGKDM-----RQSF----YEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1333)
Q Consensus 660 ----------~iayv~Q~~~i~~~Tv~enI~~g~~~-----~~~~----~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~ 720 (1333)
.++|++|++.++..|++||+.++... +... ..+.++..++.+++. +.++..+.+
T Consensus 77 ~~~~~~~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~ 149 (251)
T PRK14244 77 VDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELG-------DRLKDSAFE 149 (251)
T ss_pred cccchHHHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhh-------hHhhcChhh
Confidence 47999999988878999999875321 1111 122333333322111 234567889
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEE
Q 000720 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1333)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~ 799 (1333)
||||||||++||||++.+|+++||||||++||+.+.+.+.+ .++.+.+++|+|++||+++++.. ||++++|++|++++
T Consensus 150 LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~ 228 (251)
T PRK14244 150 LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIEN-LIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVE 228 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999998877765 45555568999999999999864 99999999999999
Q ss_pred ccChHHHHhh
Q 000720 800 SGKYEDLIAD 809 (1333)
Q Consensus 800 ~g~~~~l~~~ 809 (1333)
.|+++++.++
T Consensus 229 ~~~~~~~~~~ 238 (251)
T PRK14244 229 YNTTQEIFKN 238 (251)
T ss_pred eCCHHHHhcC
Confidence 9999888753
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=322.23 Aligned_cols=205 Identities=21% Similarity=0.331 Sum_probs=163.0
Q ss_pred CccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCc-----CCCCcEEEECC--
Q 000720 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG-- 659 (1333)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~-----~~~G~~i~~~g-- 659 (1333)
+..++++|++++|+.. +.++| ||+|++||+++|+||||||||||+++|+|+.+ |++|++ .++|
T Consensus 37 ~~~l~~~~l~~~~~~~--------~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I-~~~g~~ 107 (286)
T PRK14275 37 KPHVVAKNFSIYYGEF--------EAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGAL-MFDGED 107 (286)
T ss_pred ceEEEEeeeEEEECCE--------EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEE-EECCEE
Confidence 4468999999999632 58999 99999999999999999999999999999854 488875 4433
Q ss_pred -------------eEEEEcCCCCCCCCCHHHHhccCCcC----CHH----HHHHHHHHcccchHHHhhcCCCccccCCCC
Q 000720 660 -------------KKAYVPQSSWIQTGTIRENILFGKDM----RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1333)
Q Consensus 660 -------------~iayv~Q~~~i~~~Tv~enI~~g~~~----~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g 718 (1333)
.++|++|++.++..|++||+.++... ... +..+.++..++...+. ...++++
T Consensus 108 i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~ 180 (286)
T PRK14275 108 IYGKFTDEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS-------DRLDKNA 180 (286)
T ss_pred hhhcccchHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchh-------hHhhCCh
Confidence 47999999988778999999886421 111 1112222222221111 1235678
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeE
Q 000720 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKI 797 (1333)
Q Consensus 719 ~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i 797 (1333)
.+||||||||++||||++.+|+++||||||++||+.+.+.+.+ +++.+.+++|||++||+++++.. ||++++|++|++
T Consensus 181 ~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~-~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i 259 (286)
T PRK14275 181 LGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIED-LIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVL 259 (286)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 8999999999999999999999999999999999999887776 45555557899999999999864 999999999999
Q ss_pred EEccChHHHHhh
Q 000720 798 EQSGKYEDLIAD 809 (1333)
Q Consensus 798 ~~~g~~~~l~~~ 809 (1333)
++.|+++++.++
T Consensus 260 ~~~g~~~~~~~~ 271 (286)
T PRK14275 260 VEHAPTAQLFTN 271 (286)
T ss_pred EEeCCHHHHHhC
Confidence 999999988653
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=318.09 Aligned_cols=204 Identities=24% Similarity=0.367 Sum_probs=165.5
Q ss_pred CccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcC-----CCCcEEEEC---
Q 000720 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVH--- 658 (1333)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~-----~~G~~i~~~--- 658 (1333)
...|+++|++++|+. .+.+++ ||++++||+++|+|+||||||||+++|+|+.+| ++|++ .++
T Consensus 14 ~~~l~~~~l~~~~~~--------~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i-~~~g~~ 84 (265)
T PRK14252 14 QQKSEVNKLNFYYGG--------YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEI-ILHPDN 84 (265)
T ss_pred CceEEEEEEEEEECC--------eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEE-EEcCcc
Confidence 346999999999963 258999 999999999999999999999999999999875 67875 442
Q ss_pred --------------CeEEEEcCCCCCCCCCHHHHhccCCcC---C-----HHHHHHHHHHcccchHHHhhcCCCccccCC
Q 000720 659 --------------GKKAYVPQSSWIQTGTIRENILFGKDM---R-----QSFYEEVLEGCALNQDIEMWADGDLSVVGE 716 (1333)
Q Consensus 659 --------------g~iayv~Q~~~i~~~Tv~enI~~g~~~---~-----~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~ 716 (1333)
..++|++|++.++..|++||+.++... . +++..+.++.+++.+++. +..++
T Consensus 85 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~ 157 (265)
T PRK14252 85 VNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVK-------DRLGD 157 (265)
T ss_pred ccccccccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhh-------HHHhC
Confidence 247999999998888999999875321 1 122333444444432222 23456
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCC
Q 000720 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDG 795 (1333)
Q Consensus 717 ~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G 795 (1333)
.+.+||||||||++||||++++|+++||||||++||+.+.+.+.+. ++.+.+++|+|++||+++++. .||++++|++|
T Consensus 158 ~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~-l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G 236 (265)
T PRK14252 158 LAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEEL-ISDLKNKVTILIVTHNMQQAARVSDYTAYMYMG 236 (265)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHH-HHHHHhCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 7889999999999999999999999999999999999998877664 444455789999999999985 59999999999
Q ss_pred eEEEccChHHHHh
Q 000720 796 KIEQSGKYEDLIA 808 (1333)
Q Consensus 796 ~i~~~g~~~~l~~ 808 (1333)
++++.|+.+++..
T Consensus 237 ~i~~~g~~~~~~~ 249 (265)
T PRK14252 237 ELIEFGATDTIFI 249 (265)
T ss_pred EEEEeCCHHHHHh
Confidence 9999999988865
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=296.79 Aligned_cols=204 Identities=25% Similarity=0.403 Sum_probs=162.7
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCe---------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------- 660 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~--------- 660 (1333)
+..+|...+|.. ..+.++ ||++++||+|++.||||+||||.+.++.|+++|++|++ .+++.
T Consensus 5 L~a~~l~K~y~k--------r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i-~ld~~diT~lPm~~ 75 (243)
T COG1137 5 LVAENLAKSYKK--------RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKI-LLDDEDITKLPMHK 75 (243)
T ss_pred EEehhhhHhhCC--------eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceE-EECCcccccCChHH
Confidence 556666677754 367888 99999999999999999999999999999999999997 66652
Q ss_pred -----EEEEcCCCCCCC-CCHHHHhccCCcCCH-HHH--HHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHH
Q 000720 661 -----KAYVPQSSWIQT-GTIRENILFGKDMRQ-SFY--EEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQL 731 (1333)
Q Consensus 661 -----iayv~Q~~~i~~-~Tv~enI~~g~~~~~-~~~--~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~L 731 (1333)
+||+||+|.+|. .||+|||..-.++.+ ... ++-.+.-.|.+++.. ....+.++.+||||||+|+.|
T Consensus 76 RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i-----~hlr~~~a~sLSGGERRR~EI 150 (243)
T COG1137 76 RARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHI-----THLRDSKAYSLSGGERRRVEI 150 (243)
T ss_pred HhhcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhch-----HHHhcCcccccccchHHHHHH
Confidence 699999999986 499999987554433 111 111111223333222 123347899999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEecCchhh-hhcCCEEEEEeCCeEEEccChHHHHhh
Q 000720 732 ARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEF-LDAADLVLVMKDGKIEQSGKYEDLIAD 809 (1333)
Q Consensus 732 ARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~-~~~~TvIlvtH~~~~-l~~aD~i~vl~~G~i~~~g~~~~l~~~ 809 (1333)
||||+.+|+.+||||||+|+||..-..|- ++++.+ .+|--|+++-|++.+ +..|||.+++.+|+|..+|+++|+.++
T Consensus 151 ARaLa~~P~fiLLDEPFAGVDPiaV~dIq-~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n 229 (243)
T COG1137 151 ARALAANPKFILLDEPFAGVDPIAVIDIQ-RIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN 229 (243)
T ss_pred HHHHhcCCCEEEecCCccCCCchhHHHHH-HHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcC
Confidence 99999999999999999999999877764 455444 468899999999954 788999999999999999999999874
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=326.51 Aligned_cols=213 Identities=21% Similarity=0.299 Sum_probs=164.6
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcC----CCCcEEEECC-----
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR----ISGAAIKVHG----- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~----~~G~~i~~~g----- 659 (1333)
.++++|++++|+.+. .....++| ||+|++||+++|+|+||||||||+++|+|++++ ++|++ .++|
T Consensus 3 ~L~v~~l~~~~~~~~----~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i-~~~G~~i~~ 77 (326)
T PRK11022 3 LLNVDKLSVHFGDES----APFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKL-EFNGQDLQR 77 (326)
T ss_pred eEEEeCeEEEECCCC----ccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEE-EECCEECCc
Confidence 378999999997531 11358999 999999999999999999999999999999974 77875 5554
Q ss_pred ------------eEEEEcCCCC--C-CCCCHHHHhccCC----cCCH----HHHHHHHHHcccchHHHhhcCCCccccCC
Q 000720 660 ------------KKAYVPQSSW--I-QTGTIRENILFGK----DMRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGE 716 (1333)
Q Consensus 660 ------------~iayv~Q~~~--i-~~~Tv~enI~~g~----~~~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~ 716 (1333)
.++|++|+|. + +..|+.+++.... .... ++..+.++..++.+. ....+.
T Consensus 78 ~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~--------~~~l~~ 149 (326)
T PRK11022 78 ISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDP--------ASRLDV 149 (326)
T ss_pred CCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------HHHHhC
Confidence 3899999984 2 3468877764321 1111 222333444444211 122456
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhh-cCCEEEEEeC
Q 000720 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKD 794 (1333)
Q Consensus 717 ~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~-~aD~i~vl~~ 794 (1333)
.+.+|||||||||+||||++.+|+++|+||||++||+.++.++.+.+.+... .+.|+|+||||++.+. .||+|++|++
T Consensus 150 ~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~ 229 (326)
T PRK11022 150 YPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYA 229 (326)
T ss_pred CchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 7889999999999999999999999999999999999999888875544333 4789999999999985 5999999999
Q ss_pred CeEEEccChHHHHhhcchHHH
Q 000720 795 GKIEQSGKYEDLIADQNSELV 815 (1333)
Q Consensus 795 G~i~~~g~~~~l~~~~~~~~~ 815 (1333)
|+|++.|+.+++.++....+.
T Consensus 230 G~ive~g~~~~~~~~p~hpyt 250 (326)
T PRK11022 230 GQVVETGKAHDIFRAPRHPYT 250 (326)
T ss_pred CEEEEECCHHHHhhCCCChHH
Confidence 999999999999875444443
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=312.58 Aligned_cols=198 Identities=28% Similarity=0.367 Sum_probs=160.9
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
|+++|++++|+. .+.+++ |+++++||+++|+|+||||||||+++|+|+++|.+|++ .++|
T Consensus 1 l~~~~l~~~~~~--------~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i-~~~g~~~~~~~~~~ 71 (232)
T cd03300 1 IELENVSKFYGG--------FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEI-LLDGKDITNLPPHK 71 (232)
T ss_pred CEEEeEEEEeCC--------eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE-EECCEEcCcCChhh
Confidence 468999999963 368999 99999999999999999999999999999999999986 5554
Q ss_pred -eEEEEcCCCCCCC-CCHHHHhccCCcC---CH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHH
Q 000720 660 -KKAYVPQSSWIQT-GTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1333)
Q Consensus 660 -~iayv~Q~~~i~~-~Tv~enI~~g~~~---~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~ 730 (1333)
.++|++|++.++. .|++||+.++... +. ++.+++++..++. ........+||||||||++
T Consensus 72 ~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~lS~G~~qrl~ 140 (232)
T cd03300 72 RPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLE-----------GYANRKPSQLSGGQQQRVA 140 (232)
T ss_pred cceEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-----------hhhcCChhhCCHHHHHHHH
Confidence 4799999998764 5999999875321 11 1223333333332 2234567899999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChHHHHh
Q 000720 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 731 LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
||||++.+|+++||||||++||+.+.+.+.+.+.....+ ++|+|++||+++++.. ||++++|++|++.+.|+.+++..
T Consensus 141 laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~ 220 (232)
T cd03300 141 IARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYE 220 (232)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHh
Confidence 999999999999999999999999988776644333333 7999999999999865 99999999999999999888765
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=320.46 Aligned_cols=204 Identities=24% Similarity=0.323 Sum_probs=164.6
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcC-----CCCcEEEECC---
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG--- 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~-----~~G~~i~~~g--- 659 (1333)
..++++|++++|+. .+.+++ ||++++||+++|+|+||||||||+++|+|+.+| .+|++ .++|
T Consensus 20 ~~l~i~nl~~~~~~--------~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i-~~~g~~i 90 (276)
T PRK14271 20 PAMAAVNLTLGFAG--------KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDV-LLGGRSI 90 (276)
T ss_pred cEEEEeeEEEEECC--------EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEE-EECCEEc
Confidence 35899999999964 368999 999999999999999999999999999999986 68875 5443
Q ss_pred -----------eEEEEcCCCCCCCCCHHHHhccCCcC----CHHHH----HHHHHHcccchHHHhhcCCCccccCCCCCC
Q 000720 660 -----------KKAYVPQSSWIQTGTIRENILFGKDM----RQSFY----EEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1333)
Q Consensus 660 -----------~iayv~Q~~~i~~~Tv~enI~~g~~~----~~~~~----~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~ 720 (1333)
.++|++|++.+++.|++||+.++... ....+ .+.++.+++...+ .+..++.+.+
T Consensus 91 ~~~~~~~~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~l~~~~~~ 163 (276)
T PRK14271 91 FNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAV-------KDRLSDSPFR 163 (276)
T ss_pred cccchhHHHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchh-------hhHhhCCccc
Confidence 47999999988889999999876321 22111 2223333332111 1234567889
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEE
Q 000720 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1333)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~ 799 (1333)
||||||||++||||++++|+++||||||++||+.+.+.+++. ++.+.+++|+|++||+++.+.. ||++++|++|++++
T Consensus 164 LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~-L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~ 242 (276)
T PRK14271 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEF-IRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVE 242 (276)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999998887764 4444456899999999998764 99999999999999
Q ss_pred ccChHHHHhh
Q 000720 800 SGKYEDLIAD 809 (1333)
Q Consensus 800 ~g~~~~l~~~ 809 (1333)
.|+++++.+.
T Consensus 243 ~g~~~~~~~~ 252 (276)
T PRK14271 243 EGPTEQLFSS 252 (276)
T ss_pred eCCHHHHHhC
Confidence 9999998763
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=314.75 Aligned_cols=198 Identities=24% Similarity=0.359 Sum_probs=163.3
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--eEEEEcC
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVPQ 666 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--~iayv~Q 666 (1333)
.++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+.+|++|++ .+++ .++|++|
T Consensus 4 ~l~~~~l~~~~~~--------~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i-~~~~~~~i~~v~q 74 (251)
T PRK09544 4 LVSLENVSVSFGQ--------RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI-KRNGKLRIGYVPQ 74 (251)
T ss_pred EEEEeceEEEECC--------ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCccCEEEecc
Confidence 4889999999963 358999 99999999999999999999999999999999999986 6765 5899999
Q ss_pred CCCCCC---CCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEE
Q 000720 667 SSWIQT---GTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYI 743 (1333)
Q Consensus 667 ~~~i~~---~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ill 743 (1333)
++.++. .|+++|+.+......++..++++.+++.+. ...++.+||||||||++||||++.+|+++|
T Consensus 75 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGq~qrv~laral~~~p~lll 143 (251)
T PRK09544 75 KLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHL-----------IDAPMQKLSGGETQRVLLARALLNRPQLLV 143 (251)
T ss_pred ccccccccChhHHHHHhccccccHHHHHHHHHHcCChHH-----------HhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 986543 489999876433334445556666655422 234678999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhh-cCCEEEEEeCCeEEEccChHHHHh
Q 000720 744 FDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 744 LDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
|||||++||+.+.+.+.+.+.+...+ ++|+|++||+++++. .||+|++|++ ++++.|+++++.+
T Consensus 144 LDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~ 209 (251)
T PRK09544 144 LDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL 209 (251)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC
Confidence 99999999999988877654433334 789999999999985 5999999965 7999999988864
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-33 Score=315.93 Aligned_cols=203 Identities=19% Similarity=0.265 Sum_probs=159.4
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 6 ~l~~~~l~~~~~~--------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~i~ 76 (258)
T PRK11701 6 LLSVRGLTKLYGP--------RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEV-HYRMRDGQLRDLY 76 (258)
T ss_pred eEEEeeeEEEcCC--------ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEE-EECCccccccccc
Confidence 5899999999963 358999 99999999999999999999999999999999999986 4433
Q ss_pred -------------eEEEEcCCCC--C-CCCCHHHHhccCCc----CC-HHHHHHHHHHcccchHHHhhcCCCccccCCCC
Q 000720 660 -------------KKAYVPQSSW--I-QTGTIRENILFGKD----MR-QSFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1333)
Q Consensus 660 -------------~iayv~Q~~~--i-~~~Tv~enI~~g~~----~~-~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g 718 (1333)
.++|++|++. + .+.|+.||+.+... .+ .+..+++. +.++.+..+ .+..++++
T Consensus 77 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~------~~l~~~~l~-~~~~~~~~ 149 (258)
T PRK11701 77 ALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAG------DWLERVEID-AARIDDLP 149 (258)
T ss_pred cCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHH------HHHHHcCCC-hhHHhCCC
Confidence 3799999984 2 34689999864210 11 11111111 112222211 12456788
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhh-cCCEEEEEeCCe
Q 000720 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLD-AADLVLVMKDGK 796 (1333)
Q Consensus 719 ~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~-~aD~i~vl~~G~ 796 (1333)
.+||||||||++||||++.+|+++||||||++||+.+.+.+.+.+.+...+ +.|+|++||+++++. .||+|++|++|+
T Consensus 150 ~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~ 229 (258)
T PRK11701 150 TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGR 229 (258)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 999999999999999999999999999999999999988777654333333 789999999999987 599999999999
Q ss_pred EEEccChHHHHh
Q 000720 797 IEQSGKYEDLIA 808 (1333)
Q Consensus 797 i~~~g~~~~l~~ 808 (1333)
+++.|+++++..
T Consensus 230 i~~~~~~~~~~~ 241 (258)
T PRK11701 230 VVESGLTDQVLD 241 (258)
T ss_pred EEEeCCHHHHhc
Confidence 999999998875
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-33 Score=321.75 Aligned_cols=203 Identities=25% Similarity=0.390 Sum_probs=163.6
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCc-----CCCCcEEEECC---
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG--- 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~-----~~~G~~i~~~g--- 659 (1333)
..+.++|++++|+. .+.|++ ||++++||+++|+|+||||||||+++|+|+.+ |++|++ .++|
T Consensus 44 ~~l~i~nl~~~~~~--------~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I-~i~g~~i 114 (305)
T PRK14264 44 AKLSVEDLDVYYGD--------DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSV-ELDGQDI 114 (305)
T ss_pred ceEEEEEEEEEeCC--------eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEE-EECCEEc
Confidence 46899999999964 358999 99999999999999999999999999999986 578975 5443
Q ss_pred ------------eEEEEcCCCCCCCCCHHHHhccCCcCC--------------------HHHHHHHHHHcccchHHHhhc
Q 000720 660 ------------KKAYVPQSSWIQTGTIRENILFGKDMR--------------------QSFYEEVLEGCALNQDIEMWA 707 (1333)
Q Consensus 660 ------------~iayv~Q~~~i~~~Tv~enI~~g~~~~--------------------~~~~~~v~~~~~l~~d~~~~~ 707 (1333)
+++|++|++.+++.|++||+.++.... .++..+.++.+++..++
T Consensus 115 ~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---- 190 (305)
T PRK14264 115 YQDGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEV---- 190 (305)
T ss_pred ccccccHHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhh----
Confidence 479999999888889999999763210 11122333333332222
Q ss_pred CCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-C
Q 000720 708 DGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-A 786 (1333)
Q Consensus 708 ~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-a 786 (1333)
.+..++++.+||||||||++|||||+++|+++||||||+|||+.+...+.+ +++.+.+++|+|++||+++++.. |
T Consensus 191 ---~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~-~L~~~~~~~tiiivtH~~~~i~~~~ 266 (305)
T PRK14264 191 ---NDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIED-LIEELAEEYTVVVVTHNMQQAARIS 266 (305)
T ss_pred ---hHHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHhcCCEEEEEEcCHHHHHHhc
Confidence 133457789999999999999999999999999999999999999887765 45555556899999999999865 9
Q ss_pred CEE-EEEeCCeEEEccChHHHHh
Q 000720 787 DLV-LVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 787 D~i-~vl~~G~i~~~g~~~~l~~ 808 (1333)
|++ ++|++|++++.|+++++.+
T Consensus 267 d~i~~~l~~G~i~~~g~~~~~~~ 289 (305)
T PRK14264 267 DQTAVFLTGGELVEYDDTDKIFE 289 (305)
T ss_pred CEEEEEecCCEEEEeCCHHHHHh
Confidence 997 5679999999999998865
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-33 Score=314.33 Aligned_cols=203 Identities=20% Similarity=0.341 Sum_probs=160.5
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCC-----CCcEEEECC----
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI-----SGAAIKVHG---- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~-----~G~~i~~~g---- 659 (1333)
.++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+++|. +|++ .++|
T Consensus 4 ~l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i-~~~g~~~~ 74 (252)
T PRK14272 4 LLSAQDVNIYYGD--------KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRI-LLDGQDIY 74 (252)
T ss_pred EEEEeeeEEEECC--------EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeE-EECCEEcc
Confidence 4789999999963 368999 9999999999999999999999999999999864 6875 4433
Q ss_pred -----------eEEEEcCCCCCCC-CCHHHHhccCCcC----CHHHHH----HHHHHcccchHHHhhcCCCccccCCCCC
Q 000720 660 -----------KKAYVPQSSWIQT-GTIRENILFGKDM----RQSFYE----EVLEGCALNQDIEMWADGDLSVVGERGI 719 (1333)
Q Consensus 660 -----------~iayv~Q~~~i~~-~Tv~enI~~g~~~----~~~~~~----~v~~~~~l~~d~~~~~~g~~t~ig~~g~ 719 (1333)
.++|++|++.++. .|++||+.++... .++... +.++..++...+. ...+..+.
T Consensus 75 ~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~ 147 (252)
T PRK14272 75 GPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVK-------DRLKTPAT 147 (252)
T ss_pred cCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhh-------hhhcCCcc
Confidence 4799999987766 6999999865321 111111 1122222211111 12346678
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEE
Q 000720 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE 798 (1333)
Q Consensus 720 ~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~ 798 (1333)
+||||||||++||||++++|+++||||||++||+.+.+.+.+ +++...+++|+|++||+++.+.. ||++++|++|+++
T Consensus 148 ~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T PRK14272 148 GLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIED-LMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLV 226 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999887766 44555567999999999999875 9999999999999
Q ss_pred EccChHHHHhh
Q 000720 799 QSGKYEDLIAD 809 (1333)
Q Consensus 799 ~~g~~~~l~~~ 809 (1333)
+.|+++++..+
T Consensus 227 ~~~~~~~~~~~ 237 (252)
T PRK14272 227 EHGPTDQLFTN 237 (252)
T ss_pred EeCCHHHHHhC
Confidence 99999988753
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-33 Score=314.89 Aligned_cols=202 Identities=25% Similarity=0.366 Sum_probs=164.3
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCc-----CCCCcEEEECC----
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG---- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~-----~~~G~~i~~~g---- 659 (1333)
.++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+.+ |++|++ .++|
T Consensus 3 ~l~~~~v~~~~~~--------~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v-~~~g~~i~ 73 (250)
T PRK14266 3 RIEVENLNTYFDD--------AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHI-YLDGVDIY 73 (250)
T ss_pred EEEEEeEEEEeCC--------eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEE-EECCEEcc
Confidence 4789999999963 358999 99999999999999999999999999999864 378875 4433
Q ss_pred -----------eEEEEcCCCCCCCCCHHHHhccCCc----CCH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCC
Q 000720 660 -----------KKAYVPQSSWIQTGTIRENILFGKD----MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1333)
Q Consensus 660 -----------~iayv~Q~~~i~~~Tv~enI~~g~~----~~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~ 720 (1333)
.++|+||++++++.|++||+.++.. .++ ++..+.++.+++.+++.. ..++.+.+
T Consensus 74 ~~~~~~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~ 146 (250)
T PRK14266 74 DPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKD-------KLDKSALG 146 (250)
T ss_pred cccccHHHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHH-------HHhCCccc
Confidence 4799999999888899999987531 111 223344555555433322 23467889
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEE
Q 000720 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1333)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~ 799 (1333)
||||||||++||||++++|+++||||||++||+.+...+.+ +++...+++|+|++||+++++.. +|++++|++|++++
T Consensus 147 LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~-~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~ 225 (250)
T PRK14266 147 LSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIED-LIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIE 225 (250)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHH-HHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEE
Confidence 99999999999999999999999999999999999887765 45555568899999999998765 99999999999999
Q ss_pred ccChHHHHh
Q 000720 800 SGKYEDLIA 808 (1333)
Q Consensus 800 ~g~~~~l~~ 808 (1333)
.|+++++..
T Consensus 226 ~g~~~~~~~ 234 (250)
T PRK14266 226 SGLTDQIFI 234 (250)
T ss_pred eCCHHHHHh
Confidence 999998865
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=307.29 Aligned_cols=189 Identities=28% Similarity=0.402 Sum_probs=152.2
Q ss_pred EEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC-----------
Q 000720 592 DIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (1333)
Q Consensus 592 ~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g----------- 659 (1333)
+++|+++.|+. .+++ |+++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 2 ~~~~l~~~~~~----------~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~~ 70 (213)
T TIGR01277 2 ALDKVRYEYEH----------LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSI-KVNDQSHTGLAPYQR 70 (213)
T ss_pred eEEeeeEEeCC----------cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEE-EECCEEcccCChhcc
Confidence 57899998852 2457 99999999999999999999999999999999999986 5554
Q ss_pred eEEEEcCCCCCCC-CCHHHHhccCCc--C--C---HHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHH
Q 000720 660 KKAYVPQSSWIQT-GTIRENILFGKD--M--R---QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQL 731 (1333)
Q Consensus 660 ~iayv~Q~~~i~~-~Tv~enI~~g~~--~--~---~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~L 731 (1333)
.++|++|+|.++. .|++||+.++.. . . +.+.+++++..++.+ ..+..+.+||||||||++|
T Consensus 71 ~i~~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~l 139 (213)
T TIGR01277 71 PVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIAD-----------YLDRLPEQLSGGQRQRVAL 139 (213)
T ss_pred ceEEEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHH-----------HhhCCcccCCHHHHHHHHH
Confidence 3799999998765 699999986421 1 1 122333444443321 2335667999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhh-cCCEEEEEeCCeEEEccC
Q 000720 732 ARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGK 802 (1333)
Q Consensus 732 ARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~ 802 (1333)
|||++.+|++++|||||++||+.+++.+.+.+.+...+ +.|+|++||+++++. .||++++|++|++++.|.
T Consensus 140 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 140 ARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 99999999999999999999999988887654443333 789999999999876 499999999999998764
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-33 Score=316.75 Aligned_cols=209 Identities=24% Similarity=0.329 Sum_probs=162.4
Q ss_pred cEEEeeeEEEcCCccccc-CCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--------
Q 000720 590 AIDIEAGEYAWDAREENF-KKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~-~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g-------- 659 (1333)
.++++|++++|....... ....+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~ 82 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEL-LIDDHPLHFGDY 82 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEE-EECCEECCCCch
Confidence 589999999996320000 012468999 99999999999999999999999999999999999986 5543
Q ss_pred -----eEEEEcCCCC--C-CCCCHHHHhccCCc----CCH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCCh
Q 000720 660 -----KKAYVPQSSW--I-QTGTIRENILFGKD----MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1333)
Q Consensus 660 -----~iayv~Q~~~--i-~~~Tv~enI~~g~~----~~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSG 723 (1333)
.++|++|++. + ...|+.||+.++.. ... +...++++.+++..+. .+..+.+|||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LS~ 152 (267)
T PRK15112 83 SYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDH----------ASYYPHMLAP 152 (267)
T ss_pred hhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHH----------HhcCchhcCH
Confidence 4799999974 3 34599999875321 111 1223344444442111 1245679999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhhc-CCEEEEEeCCeEEEcc
Q 000720 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1333)
Q Consensus 724 GQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g 801 (1333)
|||||++||||++.+|+++||||||++||+.+.+.+.+.+.+... .++|||++||+++.+.. ||++++|++|++++.|
T Consensus 153 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999998877765444333 37899999999999875 9999999999999999
Q ss_pred ChHHHHhh
Q 000720 802 KYEDLIAD 809 (1333)
Q Consensus 802 ~~~~l~~~ 809 (1333)
+++++.+.
T Consensus 233 ~~~~~~~~ 240 (267)
T PRK15112 233 STADVLAS 240 (267)
T ss_pred CHHHHhcC
Confidence 99998763
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-33 Score=325.54 Aligned_cols=214 Identities=17% Similarity=0.261 Sum_probs=165.6
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCc----CCCCcEEEECC-----
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP----RISGAAIKVHG----- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~----~~~G~~i~~~g----- 659 (1333)
.++++|++++|+... .....+++ ||+|++||+++|+|+||||||||+++|+|+.+ +++|++ .++|
T Consensus 3 ~L~v~~l~~~y~~~~----~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i-~~~g~~i~~ 77 (330)
T PRK15093 3 LLDIRNLTIEFKTSD----GWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRM-RFDDIDLLR 77 (330)
T ss_pred eEEEeeeEEEEeCCC----CCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEE-EECCEECCc
Confidence 478999999996431 12458999 99999999999999999999999999999986 477875 5543
Q ss_pred ------------eEEEEcCCCCC---CCCCHHHHhccCCc---C------C----HHHHHHHHHHcccchHHHhhcCCCc
Q 000720 660 ------------KKAYVPQSSWI---QTGTIRENILFGKD---M------R----QSFYEEVLEGCALNQDIEMWADGDL 711 (1333)
Q Consensus 660 ------------~iayv~Q~~~i---~~~Tv~enI~~g~~---~------~----~~~~~~v~~~~~l~~d~~~~~~g~~ 711 (1333)
.++|++|+|.. +..||.+|+..... . + .++..+.++..++.+..
T Consensus 78 ~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~-------- 149 (330)
T PRK15093 78 LSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHK-------- 149 (330)
T ss_pred CCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChH--------
Confidence 48999999852 35699999964210 0 0 11223344444443211
Q ss_pred cccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhhc-CCEE
Q 000720 712 SVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLV 789 (1333)
Q Consensus 712 t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~~-aD~i 789 (1333)
....+.+.+|||||||||+|||||+.+|+++|+||||++||+.++.++.+.+.+... .+.|+|+||||++.+.. ||+|
T Consensus 150 ~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri 229 (330)
T PRK15093 150 DAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKI 229 (330)
T ss_pred HHHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEE
Confidence 123467789999999999999999999999999999999999998888775444333 37899999999999865 9999
Q ss_pred EEEeCCeEEEccChHHHHhhcchHHHH
Q 000720 790 LVMKDGKIEQSGKYEDLIADQNSELVR 816 (1333)
Q Consensus 790 ~vl~~G~i~~~g~~~~l~~~~~~~~~~ 816 (1333)
++|++|+|++.|+.+++.++....+.+
T Consensus 230 ~vm~~G~ive~g~~~~i~~~p~~~y~~ 256 (330)
T PRK15093 230 NVLYCGQTVETAPSKELVTTPHHPYTQ 256 (330)
T ss_pred EEEECCEEEEECCHHHHHhCCCCHHHH
Confidence 999999999999999987644444433
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-33 Score=315.30 Aligned_cols=202 Identities=24% Similarity=0.386 Sum_probs=163.1
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcC-----CCCcEEEECC----
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG---- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~-----~~G~~i~~~g---- 659 (1333)
.++++|++++|+. .+.+++ ||++++||+++|+|+||||||||+++|+|+++| ++|++ .++|
T Consensus 7 ~l~~~~l~~~~~~--------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i-~~~g~~i~ 77 (259)
T PRK14260 7 AIKVKDLSFYYNT--------SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVV-DFFGQNIY 77 (259)
T ss_pred eEEEEEEEEEECC--------eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEE-EECCEecc
Confidence 5899999999963 258999 999999999999999999999999999999885 47875 4432
Q ss_pred -----------eEEEEcCCCCCCCCCHHHHhccCCc----CCH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCC
Q 000720 660 -----------KKAYVPQSSWIQTGTIRENILFGKD----MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1333)
Q Consensus 660 -----------~iayv~Q~~~i~~~Tv~enI~~g~~----~~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~ 720 (1333)
+++|++|++.+++.|++||+.++.. ..+ ++..++++.+++.+++.. ..++.+.+
T Consensus 78 ~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~ 150 (259)
T PRK14260 78 DPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKD-------KLNKSALG 150 (259)
T ss_pred ccccchHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhh-------HhcCCccc
Confidence 4799999998888999999987532 111 122334444444322221 23467889
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEe-----C
Q 000720 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMK-----D 794 (1333)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~-----~ 794 (1333)
||||||||++||||++.+|+++||||||++||+.+.+.+.+. ++...+++|+|++||+++++.. ||++++|+ +
T Consensus 151 LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~ 229 (259)
T PRK14260 151 LSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEEL-IHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRI 229 (259)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHH-HHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCC
Confidence 999999999999999999999999999999999998877664 4444557899999999999865 99999997 5
Q ss_pred CeEEEccChHHHHh
Q 000720 795 GKIEQSGKYEDLIA 808 (1333)
Q Consensus 795 G~i~~~g~~~~l~~ 808 (1333)
|++++.|+++++.+
T Consensus 230 G~i~~~~~~~~~~~ 243 (259)
T PRK14260 230 GQMVEFGVTTQIFS 243 (259)
T ss_pred ceEEEeCCHHHHhc
Confidence 99999999999865
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-33 Score=311.15 Aligned_cols=198 Identities=34% Similarity=0.442 Sum_probs=160.5
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|.+++|+. ++.+++ |+++.+||+++|+||||||||||+++|+|+.+|.+|++ .++|
T Consensus 1 i~i~~l~~~~~~--------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i-~i~g~~~~~~~~~~ 71 (237)
T TIGR00968 1 IEIANISKRFGS--------FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRI-RLNGQDATRVHARD 71 (237)
T ss_pred CEEEEEEEEECC--------eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE-EECCEEcCcCChhh
Confidence 468999999964 258999 99999999999999999999999999999999999986 5543
Q ss_pred -eEEEEcCCCCCCC-CCHHHHhccCCcC---CHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHH
Q 000720 660 -KKAYVPQSSWIQT-GTIRENILFGKDM---RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1333)
Q Consensus 660 -~iayv~Q~~~i~~-~Tv~enI~~g~~~---~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~ 730 (1333)
.++|+||+|.++. .|++||+.++... +.. ..++.++..++. ...+....+||||||||++
T Consensus 72 ~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~lS~G~~qrl~ 140 (237)
T TIGR00968 72 RKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLE-----------GLGDRYPNQLSGGQRQRVA 140 (237)
T ss_pred cCEEEEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCH-----------hHhhCChhhCCHHHHHHHH
Confidence 4799999998775 5999999876432 111 112222222221 1234567899999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChHHHHh
Q 000720 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 731 LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
||||++++|++++|||||++||+++.+.+.+.+.+...+ ++|+|++||+++.+.. ||++++|++|++++.|+.+++.+
T Consensus 141 laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 220 (237)
T TIGR00968 141 LARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYD 220 (237)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHc
Confidence 999999999999999999999999988777644433333 7899999999998765 99999999999999999988865
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-33 Score=315.77 Aligned_cols=203 Identities=26% Similarity=0.377 Sum_probs=163.0
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcC-----CCCcEEEECC---
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG--- 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~-----~~G~~i~~~g--- 659 (1333)
..++++|+++.|+. .+.+++ ||++++||+++|+||||||||||+++|+|+.++ .+|++ .++|
T Consensus 19 ~~l~~~nl~~~~~~--------~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i-~~~g~~l 89 (274)
T PRK14265 19 SVFEVEGVKVFYGG--------FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRL-LYRDRNI 89 (274)
T ss_pred ceEEEeeEEEEeCC--------eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceE-EECCEec
Confidence 46999999999963 258999 999999999999999999999999999999863 57875 4432
Q ss_pred ------------eEEEEcCCCCCCCCCHHHHhccCCcC---C---HHHHHHHHHHcccchHHHhhcCCCccccCCCCCCC
Q 000720 660 ------------KKAYVPQSSWIQTGTIRENILFGKDM---R---QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1333)
Q Consensus 660 ------------~iayv~Q~~~i~~~Tv~enI~~g~~~---~---~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~L 721 (1333)
.++|++|++.+++.|+.||+.++... . ++..++.++.+++...+. ...++.+.+|
T Consensus 90 ~~~~~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~L 162 (274)
T PRK14265 90 YDSQINSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVK-------DKLKEKGTAL 162 (274)
T ss_pred ccccchhHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhH-------HHhcCCcccC
Confidence 47999999988778999999876421 1 111122333333322221 1234678899
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEe-------
Q 000720 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMK------- 793 (1333)
Q Consensus 722 SGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~------- 793 (1333)
|||||||++||||++.+|+++||||||++||+.+.+.+.+. ++.+.+++|||++||+++.+.. ||++++|+
T Consensus 163 SgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~-L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~ 241 (274)
T PRK14265 163 SGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEEL-CLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYG 241 (274)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHH-HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeccccccc
Confidence 99999999999999999999999999999999998877764 4444557899999999999864 99999997
Q ss_pred --CCeEEEccChHHHHh
Q 000720 794 --DGKIEQSGKYEDLIA 808 (1333)
Q Consensus 794 --~G~i~~~g~~~~l~~ 808 (1333)
+|++++.|+.+++..
T Consensus 242 ~~~G~~~~~g~~~~~~~ 258 (274)
T PRK14265 242 KRRGKLVEFSPTEQMFG 258 (274)
T ss_pred ccCceEEEeCCHHHHHh
Confidence 899999999999875
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-33 Score=313.74 Aligned_cols=202 Identities=23% Similarity=0.338 Sum_probs=160.6
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCc--C---CCCcEEEECC----
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP--R---ISGAAIKVHG---- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~--~---~~G~~i~~~g---- 659 (1333)
.++++|+++.|+. .+.+++ ||++++||+++|+|+||||||||+++|+|..+ | ++|++ .++|
T Consensus 5 ~l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i-~~~g~~~~ 75 (252)
T PRK14255 5 IITSSDVHLFYGK--------FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNV-SLRGQNIY 75 (252)
T ss_pred eEEEEeEEEEECC--------eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEE-EEcCEEcc
Confidence 4889999999963 358999 99999999999999999999999999999865 4 47875 4433
Q ss_pred -----------eEEEEcCCCCCCCCCHHHHhccCCcC----CHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCC
Q 000720 660 -----------KKAYVPQSSWIQTGTIRENILFGKDM----RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1333)
Q Consensus 660 -----------~iayv~Q~~~i~~~Tv~enI~~g~~~----~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~ 720 (1333)
.++|++|++.+++.|++||+.++... ..+ ...+.++..++...+ ....+..+.+
T Consensus 76 ~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~ 148 (252)
T PRK14255 76 APNEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEV-------KDHLHESALS 148 (252)
T ss_pred cccccHHHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccch-------hhHHhcCccc
Confidence 47999999988778999999875321 111 112222333222111 1234567889
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeEEE
Q 000720 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQ 799 (1333)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~ 799 (1333)
||||||||++||||++.+|+++||||||++||+++++.+.+. ++...+++|+|++||+++.+. .||+|++|++|++++
T Consensus 149 LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T PRK14255 149 LSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENM-LLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIE 227 (252)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHH-HHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999998877664 444455689999999999986 499999999999999
Q ss_pred ccChHHHHh
Q 000720 800 SGKYEDLIA 808 (1333)
Q Consensus 800 ~g~~~~l~~ 808 (1333)
.|+..++..
T Consensus 228 ~~~~~~~~~ 236 (252)
T PRK14255 228 FADTKQMFL 236 (252)
T ss_pred eCCHHHHhc
Confidence 999888765
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-33 Score=312.40 Aligned_cols=202 Identities=24% Similarity=0.315 Sum_probs=161.8
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcC----CCCcEEEECC-----
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR----ISGAAIKVHG----- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~----~~G~~i~~~g----- 659 (1333)
.++++|++++| + .+++++ |+++++||+++|+|+||||||||+++|+|+.+| ++|++ .++|
T Consensus 4 ~l~~~~l~~~~--~-------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i-~~~g~~i~~ 73 (254)
T PRK10418 4 QIELRNIALQA--A-------QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRV-LLDGKPVAP 73 (254)
T ss_pred EEEEeCeEEEe--c-------cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEE-EECCeeccc
Confidence 58899999998 2 257999 999999999999999999999999999999999 89986 5543
Q ss_pred ------eEEEEcCCCC-CC--CCCHHHHhcc-----CCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHH
Q 000720 660 ------KKAYVPQSSW-IQ--TGTIRENILF-----GKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1333)
Q Consensus 660 ------~iayv~Q~~~-i~--~~Tv~enI~~-----g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQ 725 (1333)
.++|++|++. .+ ..|+.+|+.+ +....+++..+.++.+++.+. .+.+++.+.+|||||
T Consensus 74 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq 145 (254)
T PRK10418 74 CALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGM 145 (254)
T ss_pred cccccceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHH
Confidence 4899999973 33 3588888754 222222334445554444221 123457788999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhh-cCCEEEEEeCCeEEEccCh
Q 000720 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKY 803 (1333)
Q Consensus 726 kqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~~ 803 (1333)
|||++||||++.+|+++||||||++||+.+.+.+.+.+.+... .+.|+|++||+++.+. .||++++|++|++++.|+.
T Consensus 146 ~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~ 225 (254)
T PRK10418 146 LQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDV 225 (254)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCH
Confidence 9999999999999999999999999999998877764433333 3789999999999985 5999999999999999999
Q ss_pred HHHHhh
Q 000720 804 EDLIAD 809 (1333)
Q Consensus 804 ~~l~~~ 809 (1333)
+++.++
T Consensus 226 ~~~~~~ 231 (254)
T PRK10418 226 ETLFNA 231 (254)
T ss_pred HHHhhC
Confidence 998763
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=326.03 Aligned_cols=216 Identities=19% Similarity=0.296 Sum_probs=167.6
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCC---CCcEEEECC-----
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI---SGAAIKVHG----- 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~---~G~~i~~~g----- 659 (1333)
..++++|.+++|.... .....++| ||+|++||+++|+|+||||||||+++|+|+++|. +|++ .++|
T Consensus 11 ~~L~i~~l~~~~~~~~----~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I-~~~G~~i~~ 85 (330)
T PRK09473 11 ALLDVKDLRVTFSTPD----GDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSA-TFNGREILN 85 (330)
T ss_pred ceEEEeCeEEEEecCC----CCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEE-EECCEECCc
Confidence 4689999999996431 12457999 9999999999999999999999999999999985 8876 5543
Q ss_pred ------------eEEEEcCCCC--C-CCCCHHHHhccCC----cCCHH----HHHHHHHHcccchHHHhhcCCCccccCC
Q 000720 660 ------------KKAYVPQSSW--I-QTGTIRENILFGK----DMRQS----FYEEVLEGCALNQDIEMWADGDLSVVGE 716 (1333)
Q Consensus 660 ------------~iayv~Q~~~--i-~~~Tv~enI~~g~----~~~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~ 716 (1333)
.++|++|+|. + +..|+.+|+.... ..+.. +..+.++..++ +++ .+.++.
T Consensus 86 ~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL-------~~~-~~~~~~ 157 (330)
T PRK09473 86 LPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKM-------PEA-RKRMKM 157 (330)
T ss_pred CCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-------CCh-HHHhcC
Confidence 4899999983 3 4568988886421 12221 12222333222 111 123567
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhh-cCCEEEEEeC
Q 000720 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLD-AADLVLVMKD 794 (1333)
Q Consensus 717 ~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~-~aD~i~vl~~ 794 (1333)
.+.+|||||||||+||||++.+|+++|+||||+|||+.++..+.+.+.+...+ +.|+|+||||++.+. .||+|++|++
T Consensus 158 ~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~ 237 (330)
T PRK09473 158 YPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYA 237 (330)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 88999999999999999999999999999999999999999887754433333 789999999999986 4999999999
Q ss_pred CeEEEccChHHHHhhcchHHHHH
Q 000720 795 GKIEQSGKYEDLIADQNSELVRQ 817 (1333)
Q Consensus 795 G~i~~~g~~~~l~~~~~~~~~~~ 817 (1333)
|+|++.|+.+++.+++...+...
T Consensus 238 G~ive~g~~~~i~~~p~~pyt~~ 260 (330)
T PRK09473 238 GRTMEYGNARDVFYQPSHPYSIG 260 (330)
T ss_pred CEEEEECCHHHHHhCCCCHHHHH
Confidence 99999999999987555555443
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-33 Score=310.29 Aligned_cols=197 Identities=33% Similarity=0.478 Sum_probs=160.2
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
|+++|+++.|+. ..+++ |+++++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 1 l~~~~l~~~~~~---------~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v-~i~g~~~~~~~~~~ 70 (235)
T cd03299 1 LKVENLSKDWKE---------FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKI-LLNGKDITNLPPEK 70 (235)
T ss_pred CeeEeEEEEeCC---------ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEE-EECCEEcCcCChhH
Confidence 467899999852 25999 99999999999999999999999999999999999986 6655
Q ss_pred -eEEEEcCCCCCC-CCCHHHHhccCCcCC---HH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHH
Q 000720 660 -KKAYVPQSSWIQ-TGTIRENILFGKDMR---QS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1333)
Q Consensus 660 -~iayv~Q~~~i~-~~Tv~enI~~g~~~~---~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~ 730 (1333)
.++|++|++.++ ..|++||+.++.... .. ...+.++.+++.+ .+++++.+||||||||++
T Consensus 71 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~ 139 (235)
T cd03299 71 RDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDH-----------LLNRKPETLSGGEQQRVA 139 (235)
T ss_pred cCEEEEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-----------HHhcCcccCCHHHHHHHH
Confidence 479999998766 579999998753221 11 1223333333322 234567899999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChHHHHh
Q 000720 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 731 LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
||||++++|++++|||||++||+.+.+.+.+.+.....+ ++|+|++||+++++.. ||++++|++|++++.|+++++.+
T Consensus 140 laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 219 (235)
T cd03299 140 IARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFK 219 (235)
T ss_pred HHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHh
Confidence 999999999999999999999999988776644333333 8999999999999865 99999999999999999888765
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-33 Score=317.37 Aligned_cols=199 Identities=28% Similarity=0.414 Sum_probs=158.9
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|++++|+.+ .+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 6 ~l~~~~l~~~~~~~-------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~i~~~~~~ 77 (272)
T PRK15056 6 GIVVNDVTVTWRNG-------HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKI-SILGQPTRQALQK 77 (272)
T ss_pred eEEEEeEEEEecCC-------cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEEhHHhhcc
Confidence 58999999999632 368999 99999999999999999999999999999999999986 6654
Q ss_pred -eEEEEcCCCCC---CCCCHHHHhccCCc--------CC---HHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChH
Q 000720 660 -KKAYVPQSSWI---QTGTIRENILFGKD--------MR---QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1333)
Q Consensus 660 -~iayv~Q~~~i---~~~Tv~enI~~g~~--------~~---~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGG 724 (1333)
.++|++|++.+ +..+++||+.++.. .. +++.++.++..++.. ..+.++.+||||
T Consensus 78 ~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgG 146 (272)
T PRK15056 78 NLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVE-----------FRHRQIGELSGG 146 (272)
T ss_pred ceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChh-----------HhcCCcccCCHH
Confidence 48999999854 34589999876421 00 112223333333321 223567899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeEEEccCh
Q 000720 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKY 803 (1333)
Q Consensus 725 QkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~~ 803 (1333)
||||++||||++.+|+++||||||++||+.+.+.+.+.+.+...+++|||++||+++.+. .||+++++ +|++++.|++
T Consensus 147 ~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~ 225 (272)
T PRK15056 147 QKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPT 225 (272)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCH
Confidence 999999999999999999999999999999988877654333345899999999999875 59999777 8999999999
Q ss_pred HHHHh
Q 000720 804 EDLIA 808 (1333)
Q Consensus 804 ~~l~~ 808 (1333)
+++..
T Consensus 226 ~~~~~ 230 (272)
T PRK15056 226 ETTFT 230 (272)
T ss_pred HhccC
Confidence 88753
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-29 Score=304.00 Aligned_cols=433 Identities=20% Similarity=0.243 Sum_probs=295.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccCCC--ChH------HHHHHHHhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 000720 339 YFGANRIGIRVRSALTVLIYKRSMAIKFAGP--SSG------IIINMINVDVERIGDFFLYIH-RIWLLPVQVFLALVIL 409 (1333)
Q Consensus 339 ~~~~~~~~~rir~~l~~~iy~K~L~ls~~~~--~~G------~i~nlms~D~~~i~~~~~~~~-~~w~~plqi~~~l~lL 409 (1333)
.|..+++.++.|.-|...+.+|=|.-...-+ ..| ..=..++.|+..+.+....+- .+.-..++++.-..+|
T Consensus 107 ~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~~iL 186 (604)
T COG4178 107 TWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTGIL 186 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999999886553322 222 233567788877666543322 2233334444445567
Q ss_pred HHHhhhHH---------HHHHHH--HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhhhHHHHHhchH
Q 000720 410 YKNLGAAP---------AFAALF--STIFVMVSNTPLANRQERFHS-----MIMEAKDARIKATSETLKSMRVLKLLSWE 473 (1333)
Q Consensus 410 ~~~lG~~a---------~l~gl~--~~~~~~~~~~~~~~~~~~~~~-----~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE 473 (1333)
|...| .. .++|.. ++++..++...++-++.+--. +....-|-|-.+ ..+..+-..|-+|+-|
T Consensus 187 w~lsg-~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~L-vrv~enaE~IAly~GE 264 (604)
T COG4178 187 WSLSG-GLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSL-VRVRENAEAIALYRGE 264 (604)
T ss_pred HHccC-cceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHH-HHHHhhHHHHHHhcCc
Confidence 75444 21 112211 122222333333322222111 122223445443 4577788899999999
Q ss_pred HHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 000720 474 QEFLKKLLRL--------REIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEP 545 (1333)
Q Consensus 474 ~~f~~~i~~~--------R~~E~~~l~~~~~~~a~~~~~~~~~p~lv~~~tF~~~~~~~~~Lt~~~vft~lalf~~l~~p 545 (1333)
+.=++++++. |.-....++- ........++....|.++.+ =.+..+.++-+.+.++-..|+.+...
T Consensus 265 ~~Er~~l~~~f~~v~~n~~~l~~~~~~l-~~~~~gy~~~s~v~P~li~a-----p~~f~g~i~~G~lmqa~~aF~~v~ss 338 (604)
T COG4178 265 KVERRRLDDRFDAVLGNWRRLVRAQIRL-TWFQLGYGWLSVVLPILIAA-----PRYFSGQITFGGLMQAVGAFGQVHSS 338 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHhhhhhhHHHHHHHHHhcc-----HhhhcCcChHHHHHHHHHHHHHHHHH
Confidence 7655555442 2222111111 11111111111122322221 12457789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccC--CCCC-CCCCCC------CCCCccEEEeeeEEEcCCcccccCCCcccccC
Q 000720 546 IYNLPELISMIAQTKVSLYRIQEFIKEDN--QKKP-ITEPTS------KASDVAIDIEAGEYAWDAREENFKKPTIKLTD 616 (1333)
Q Consensus 546 l~~lp~~i~~~~~a~vS~~RI~~fL~~~e--~~~~-~~~~~~------~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~ 616 (1333)
+..+-..+..+.+-++++.|+.+|-..=| +.+. ....+. +..+..|.++|++..=|+. .+.+++
T Consensus 339 lswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~-------~~ll~~ 411 (604)
T COG4178 339 LSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDG-------QTLLSE 411 (604)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCC-------Ceeecc
Confidence 99999999999999999999999985433 1111 110000 1115689999999987765 477888
Q ss_pred -CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEEC-C-eEEEEcCCCCCCCCCHHHHhccCCc---CCHHHH
Q 000720 617 -KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH-G-KKAYVPQSSWIQTGTIRENILFGKD---MRQSFY 690 (1333)
Q Consensus 617 -nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~-g-~iayv~Q~~~i~~~Tv~enI~~g~~---~~~~~~ 690 (1333)
|+++++||.+.|.||||||||||+++|+|+-|--+|++ ... + .+-|+||.|.++.||.||-|.+... +.++..
T Consensus 412 l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I-~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l 490 (604)
T COG4178 412 LNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRI-SMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAEL 490 (604)
T ss_pred ceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCce-ecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHH
Confidence 99999999999999999999999999999999999986 443 3 4799999999999999999999753 567788
Q ss_pred HHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 000720 691 EEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ 770 (1333)
Q Consensus 691 ~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~ 770 (1333)
.+++..|+|.+-.+.+.+-+ +=-..||+|||||+++||.++++|++++|||.|||||+.+...+++ .++..+.+
T Consensus 491 ~~vL~~vgL~~L~~rl~~~~-----~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q-~l~~~lp~ 564 (604)
T COG4178 491 VAVLHKVGLGDLAERLDEED-----RWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQ-LLKEELPD 564 (604)
T ss_pred HHHHHHcCcHHHHHHHhccC-----cHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHH-HHHhhCCC
Confidence 89999999987776655433 2345899999999999999999999999999999999999888876 45666789
Q ss_pred CeEEEecCchhhhhcCCEEEEEe
Q 000720 771 KTVLYTTHQLEFLDAADLVLVMK 793 (1333)
Q Consensus 771 ~TvIlvtH~~~~l~~aD~i~vl~ 793 (1333)
.|+|-|.|+.......++.+.+.
T Consensus 565 ~tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 565 ATVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred CEEEEeccchhhHHHHhhheeec
Confidence 99999999988776666555543
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-33 Score=314.21 Aligned_cols=202 Identities=24% Similarity=0.362 Sum_probs=160.7
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcC-----CCCcEEEECC----
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG---- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~-----~~G~~i~~~g---- 659 (1333)
.++++|++++|+.. +.+++ ||++++||+++|+||||||||||+++|+|+.+| ++|++ .++|
T Consensus 4 ~l~i~~v~~~~~~~--------~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I-~~~g~~~~ 74 (258)
T PRK14241 4 RIDVKDLNIYYGSF--------HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEV-LLDGEDLY 74 (258)
T ss_pred cEEEeeEEEEECCE--------eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEE-EECCEecc
Confidence 48899999999642 58999 999999999999999999999999999999874 68876 5443
Q ss_pred -----------eEEEEcCCCCCCC-CCHHHHhccCCcC----CHH----HHHHHHHHcccchHHHhhcCCCccccCCCCC
Q 000720 660 -----------KKAYVPQSSWIQT-GTIRENILFGKDM----RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1333)
Q Consensus 660 -----------~iayv~Q~~~i~~-~Tv~enI~~g~~~----~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~ 719 (1333)
.++|++|++.++. .|++||+.++... ... +.+++++..++...+ ....+..+.
T Consensus 75 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~ 147 (258)
T PRK14241 75 GPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEV-------KDRLDKPGG 147 (258)
T ss_pred ccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------hhHhhCCcc
Confidence 3799999987665 6999999865321 111 122233333332111 123346788
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEe-----
Q 000720 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMK----- 793 (1333)
Q Consensus 720 ~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~----- 793 (1333)
+||||||||++||||++++|+++||||||++||+.+.+.+.+ +++...+++|+|++||+++++. .||+|++|+
T Consensus 148 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~ 226 (258)
T PRK14241 148 GLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIED-LINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATG 226 (258)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHH-HHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCC
Confidence 999999999999999999999999999999999999887765 4555556789999999999875 599999997
Q ss_pred -CCeEEEccChHHHHh
Q 000720 794 -DGKIEQSGKYEDLIA 808 (1333)
Q Consensus 794 -~G~i~~~g~~~~l~~ 808 (1333)
+|+|++.|+++++..
T Consensus 227 ~~g~i~~~~~~~~~~~ 242 (258)
T PRK14241 227 KPGRLVEIDDTEKIFS 242 (258)
T ss_pred CCceEEecCCHHHHHh
Confidence 899999999998865
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=312.66 Aligned_cols=203 Identities=24% Similarity=0.349 Sum_probs=165.3
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcC-----CCCcEEEECC---
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG--- 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~-----~~G~~i~~~g--- 659 (1333)
..+.+++.++.|.. .+.+++ ||++++||+++|+|+||||||||+++|+|+++| .+|++ .++|
T Consensus 7 ~~~~~~~~~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i-~~~g~~i 77 (261)
T PRK14263 7 IVMDCKLDKIFYGN--------FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHV-HFLGQDV 77 (261)
T ss_pred ceEEEEeEEEEeCC--------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEE-EECCEec
Confidence 46788888888853 368999 999999999999999999999999999999986 68875 4443
Q ss_pred ------------eEEEEcCCCCCCCCCHHHHhccCCcC---C---HHHHHHHHHHcccchHHHhhcCCCccccCCCCCCC
Q 000720 660 ------------KKAYVPQSSWIQTGTIRENILFGKDM---R---QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1333)
Q Consensus 660 ------------~iayv~Q~~~i~~~Tv~enI~~g~~~---~---~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~L 721 (1333)
.++|++|++.+++.|++||+.++... . .++.++.++..++..++.. ..++++.+|
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~L 150 (261)
T PRK14263 78 YGKGVDPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-------KLKVSGLSL 150 (261)
T ss_pred cccccchHhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccC
Confidence 37999999998889999999886432 1 1233444555554333221 234678899
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEe-------
Q 000720 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMK------- 793 (1333)
Q Consensus 722 SGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~------- 793 (1333)
|||||||++||||++++|+++||||||++||+.+...+.+.+ +...+++|+|++||+++.+. .||+|++|+
T Consensus 151 S~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l-~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~ 229 (261)
T PRK14263 151 SGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELM-VELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGT 229 (261)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHH-HHHhcCCeEEEEeCCHHHHHHhCCEEEEEeccccccc
Confidence 999999999999999999999999999999999988877654 44456789999999999875 499999996
Q ss_pred -CCeEEEccChHHHHh
Q 000720 794 -DGKIEQSGKYEDLIA 808 (1333)
Q Consensus 794 -~G~i~~~g~~~~l~~ 808 (1333)
+|++++.|+.+++.+
T Consensus 230 ~~G~i~~~g~~~~~~~ 245 (261)
T PRK14263 230 RTGYLVEMGPTAQIFQ 245 (261)
T ss_pred CCceEEEeCCHHHHHh
Confidence 899999999999875
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=310.75 Aligned_cols=208 Identities=20% Similarity=0.302 Sum_probs=166.8
Q ss_pred ccEEEeeeEEEcCCccc------------ccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEE
Q 000720 589 VAIDIEAGEYAWDAREE------------NFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI 655 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~------------~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i 655 (1333)
..|+++|++..|..... ......+.+++ ||++++||+++|+||||||||||+++|+|+++|.+|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I- 81 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKV- 81 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEE-
Confidence 46889999888876311 01133568899 99999999999999999999999999999999999996
Q ss_pred EECCeEEEEcCCCCCC-CCCHHHHhccCC---cCCHHHHH----HHHHHcccchHHHhhcCCCccccCCCCCCCChHHHH
Q 000720 656 KVHGKKAYVPQSSWIQ-TGTIRENILFGK---DMRQSFYE----EVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (1333)
Q Consensus 656 ~~~g~iayv~Q~~~i~-~~Tv~enI~~g~---~~~~~~~~----~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkq 727 (1333)
.++|.+++++|++.+. ..|++||+.++. ..+.+... ++++..++ ...+...+.+|||||||
T Consensus 82 ~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~Gq~q 150 (264)
T PRK13546 82 DRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSEL-----------GEFIYQPVKKYSSGMRA 150 (264)
T ss_pred EECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-----------chhhcCCcccCCHHHHH
Confidence 8899999999988765 469999997642 12222211 12222222 12344678899999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChHHH
Q 000720 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDL 806 (1333)
Q Consensus 728 Rv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~~l 806 (1333)
|++||||++++|+++||||||++||+...+.+.+.+.....+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 151 rv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~ 230 (264)
T PRK13546 151 KLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDV 230 (264)
T ss_pred HHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999888877544433458999999999999865 999999999999999999998
Q ss_pred Hh
Q 000720 807 IA 808 (1333)
Q Consensus 807 ~~ 808 (1333)
..
T Consensus 231 ~~ 232 (264)
T PRK13546 231 LP 232 (264)
T ss_pred HH
Confidence 76
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=313.77 Aligned_cols=198 Identities=25% Similarity=0.355 Sum_probs=160.5
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCC--------CCcEEEECC--
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI--------SGAAIKVHG-- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~--------~G~~i~~~g-- 659 (1333)
++++|.+++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+++|. +|++ .++|
T Consensus 2 l~~~nl~~~~~~--------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i-~~~g~~ 72 (272)
T PRK13547 2 LTADHLHVARRH--------RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDV-TLNGEP 72 (272)
T ss_pred eEEEEEEEEECC--------EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEE-EECCEE
Confidence 678999999853 368999 9999999999999999999999999999999997 8876 6655
Q ss_pred -----------eEEEEcCCCC-CCCCCHHHHhccCCc-C-------CH---HHHHHHHHHcccchHHHhhcCCCccccCC
Q 000720 660 -----------KKAYVPQSSW-IQTGTIRENILFGKD-M-------RQ---SFYEEVLEGCALNQDIEMWADGDLSVVGE 716 (1333)
Q Consensus 660 -----------~iayv~Q~~~-i~~~Tv~enI~~g~~-~-------~~---~~~~~v~~~~~l~~d~~~~~~g~~t~ig~ 716 (1333)
.++|++|++. .+..|++||+.++.. . .. ++.+++++..++ .+..++
T Consensus 73 ~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~ 141 (272)
T PRK13547 73 LAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGA-----------TALVGR 141 (272)
T ss_pred cccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCc-----------HhhhcC
Confidence 2689999975 567899999987531 1 01 112222222222 234557
Q ss_pred CCCCCChHHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhh-c
Q 000720 717 RGINLSGGQKQRIQLARAVY---------SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLD-A 785 (1333)
Q Consensus 717 ~g~~LSGGQkqRv~LARAl~---------~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~-~ 785 (1333)
.+.+||||||||++||||++ .+|+++||||||++||+.+.+.+.+.+.+...+ ++|+|++||+++.+. .
T Consensus 142 ~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~ 221 (272)
T PRK13547 142 DVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARH 221 (272)
T ss_pred CcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHh
Confidence 78899999999999999999 599999999999999999988887654433344 789999999999986 5
Q ss_pred CCEEEEEeCCeEEEccChHHHHh
Q 000720 786 ADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 786 aD~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
||++++|++|++++.|+.+++.+
T Consensus 222 ~d~i~~l~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 222 ADRIAMLADGAIVAHGAPADVLT 244 (272)
T ss_pred CCEEEEEECCeEEEecCHHHHcC
Confidence 99999999999999999888764
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=311.68 Aligned_cols=204 Identities=22% Similarity=0.342 Sum_probs=162.5
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCC-----CCcEEEEC-----
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI-----SGAAIKVH----- 658 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~-----~G~~i~~~----- 658 (1333)
.++++|++++|+. ...++| ||++++||+++|+|+||||||||+++|+|+.+|. +|++ .++
T Consensus 7 ~l~~~nl~~~~~~--------~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i-~~~g~~i~ 77 (261)
T PRK14258 7 AIKVNNLSFYYDT--------QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRV-EFFNQNIY 77 (261)
T ss_pred eEEEeeEEEEeCC--------eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceE-EECCEEhh
Confidence 5899999999953 257999 9999999999999999999999999999999985 6754 332
Q ss_pred ----------CeEEEEcCCCCCCCCCHHHHhccCCc---C-CH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCC
Q 000720 659 ----------GKKAYVPQSSWIQTGTIRENILFGKD---M-RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1333)
Q Consensus 659 ----------g~iayv~Q~~~i~~~Tv~enI~~g~~---~-~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~ 720 (1333)
..++|++|++.++..|++||+.++.. . .. ++..++++..++...+. ...++.+.+
T Consensus 78 ~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~ 150 (261)
T PRK14258 78 ERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIK-------HKIHKSALD 150 (261)
T ss_pred ccccchHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhh-------hHhcCCccc
Confidence 24799999988777999999986421 1 11 11223333333322111 134567889
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhhc-CCEEEEEeC----
Q 000720 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKD---- 794 (1333)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~~-aD~i~vl~~---- 794 (1333)
||||||||++||||++++|+++||||||++||+.+.+.+.+.+..... +++|+|++||+++.+.. ||+|++|++
T Consensus 151 LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~ 230 (261)
T PRK14258 151 LSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENR 230 (261)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCc
Confidence 999999999999999999999999999999999998877765443223 48999999999999865 999999999
Q ss_pred -CeEEEccChHHHHhh
Q 000720 795 -GKIEQSGKYEDLIAD 809 (1333)
Q Consensus 795 -G~i~~~g~~~~l~~~ 809 (1333)
|++++.|+++++.++
T Consensus 231 ~G~i~~~~~~~~~~~~ 246 (261)
T PRK14258 231 IGQLVEFGLTKKIFNS 246 (261)
T ss_pred CceEEEeCCHHHHHhC
Confidence 999999999998753
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-33 Score=327.16 Aligned_cols=195 Identities=25% Similarity=0.384 Sum_probs=156.6
Q ss_pred eeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--------------
Q 000720 595 AGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------------- 659 (1333)
Q Consensus 595 ~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g-------------- 659 (1333)
|.+++|+.. .+ + ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 4 ~l~~~~~~~---------~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I-~~~g~~i~~~~~~~~~~~ 72 (354)
T TIGR02142 4 RFSKRLGDF---------SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEI-VLNGRTLFDSRKGIFLPP 72 (354)
T ss_pred EEEEEECCE---------EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEECccCccccccch
Confidence 567777432 24 7 99999999999999999999999999999999999986 4433
Q ss_pred ---eEEEEcCCCCCCC-CCHHHHhccCCcCC-H----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHH
Q 000720 660 ---KKAYVPQSSWIQT-GTIRENILFGKDMR-Q----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1333)
Q Consensus 660 ---~iayv~Q~~~i~~-~Tv~enI~~g~~~~-~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~ 730 (1333)
+++|++|++.++. .|++||+.|+.... . ++.++.++..++. ...++++.+||||||||++
T Consensus 73 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~-----------~~~~~~~~~LSgGqkqRva 141 (354)
T TIGR02142 73 EKRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIG-----------HLLGRLPGRLSGGEKQRVA 141 (354)
T ss_pred hhCCeEEEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCCh-----------hHhcCChhhCCHHHHHHHH
Confidence 3799999998765 69999999864321 1 1223333333332 2345678899999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChHHHHh
Q 000720 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 731 LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
||||++.+|+++||||||++||+..++.+.+.+.+...+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 142 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (354)
T TIGR02142 142 IGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWA 221 (354)
T ss_pred HHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhc
Confidence 999999999999999999999999988887655443344 7899999999998864 99999999999999999999876
Q ss_pred hcc
Q 000720 809 DQN 811 (1333)
Q Consensus 809 ~~~ 811 (1333)
+..
T Consensus 222 ~~~ 224 (354)
T TIGR02142 222 SPD 224 (354)
T ss_pred CcC
Confidence 443
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=312.80 Aligned_cols=208 Identities=25% Similarity=0.336 Sum_probs=161.3
Q ss_pred cEEEeeeEEEcCCcc-cccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--------
Q 000720 590 AIDIEAGEYAWDARE-ENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~-~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g-------- 659 (1333)
.|+++|+++.|+... ...+.+.+.++| ||++++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i-~~~g~~~~~~~~ 81 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNV-SWRGEPLAKLNR 81 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEeccccCh
Confidence 378999999997310 000012468999 99999999999999999999999999999999999986 5443
Q ss_pred --------eEEEEcCCCC--C-CCCCHHHHhccCC----cCCH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCC
Q 000720 660 --------KKAYVPQSSW--I-QTGTIRENILFGK----DMRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1333)
Q Consensus 660 --------~iayv~Q~~~--i-~~~Tv~enI~~g~----~~~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~ 720 (1333)
.++|++|++. + .+.|++||+.+.. ..+. .+.++.++.+++.. ...+.++.+
T Consensus 82 ~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----------~~~~~~~~~ 151 (268)
T PRK10419 82 AQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDD----------SVLDKRPPQ 151 (268)
T ss_pred hHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCCh----------hHhhCCCcc
Confidence 4899999973 3 3579999986531 1111 12233333333221 123467889
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhhc-CCEEEEEeCCeEE
Q 000720 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDA-ADLVLVMKDGKIE 798 (1333)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~ 798 (1333)
||||||||++||||++.+|+++||||||++||+.+.+.+.+.+.....+ ++|+|++||+++.+.. ||++++|++|+++
T Consensus 152 LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~ 231 (268)
T PRK10419 152 LSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIV 231 (268)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEe
Confidence 9999999999999999999999999999999999988776644333333 7899999999999875 9999999999999
Q ss_pred EccChHHHHh
Q 000720 799 QSGKYEDLIA 808 (1333)
Q Consensus 799 ~~g~~~~l~~ 808 (1333)
+.|+.+++..
T Consensus 232 ~~g~~~~~~~ 241 (268)
T PRK10419 232 ETQPVGDKLT 241 (268)
T ss_pred eeCChhhccC
Confidence 9999998875
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-33 Score=294.02 Aligned_cols=158 Identities=31% Similarity=0.505 Sum_probs=138.9
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++++|+. .+.+++ |+++++||+++|+||||||||||+++|+|+++|.+|++ .++|
T Consensus 1 l~~~~l~~~~~~--------~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 71 (173)
T cd03230 1 IEVRNLSKRYGK--------KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI-KVLGKDIKKEPEEV 71 (173)
T ss_pred CEEEEEEEEECC--------eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEE-EECCEEcccchHhh
Confidence 468899999863 258999 99999999999999999999999999999999999986 5544
Q ss_pred --eEEEEcCCCCCCC-CCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHc
Q 000720 660 --KKAYVPQSSWIQT-GTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY 736 (1333)
Q Consensus 660 --~iayv~Q~~~i~~-~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~ 736 (1333)
.++|++|++.++. .|++||+. ||||||||++||||++
T Consensus 72 ~~~i~~~~q~~~~~~~~tv~~~~~----------------------------------------LS~G~~qrv~laral~ 111 (173)
T cd03230 72 KRRIGYLPEEPSLYENLTVRENLK----------------------------------------LSGGMKQRLALAQALL 111 (173)
T ss_pred hccEEEEecCCccccCCcHHHHhh----------------------------------------cCHHHHHHHHHHHHHH
Confidence 4799999988765 49999973 9999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeE
Q 000720 737 SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKI 797 (1333)
Q Consensus 737 ~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i 797 (1333)
.+|+++||||||++||+.+++.+.+.+.+...++.|+|++||+.+++. .||++++|++|++
T Consensus 112 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 112 HDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 999999999999999999988887755444445789999999999987 5999999999974
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-33 Score=285.46 Aligned_cols=202 Identities=27% Similarity=0.383 Sum_probs=165.6
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCe---------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------- 660 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~--------- 660 (1333)
|+.+|.+++-.. +..+.+ ++++++||.++|+|||||||||||+.|.||+.|.+|++ .++|.
T Consensus 2 i~a~nls~~~~G--------r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v-~~~g~~l~~~~~~~ 72 (259)
T COG4559 2 IRAENLSYSLAG--------RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEV-TLNGVPLNSWPPEE 72 (259)
T ss_pred eeeeeeEEEeec--------ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeE-eeCCcChhhCCHHH
Confidence 567788777643 357888 99999999999999999999999999999999999986 77763
Q ss_pred ----EEEEcCCCCC-CCCCHHHHhccCCcCC-----HHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHH
Q 000720 661 ----KAYVPQSSWI-QTGTIRENILFGKDMR-----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1333)
Q Consensus 661 ----iayv~Q~~~i-~~~Tv~enI~~g~~~~-----~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~ 730 (1333)
-|.+||+..+ |..||+|-+.+|+-.. ....+++.++|-...|+..+.. +...+||||+||||.
T Consensus 73 lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~-------R~y~~LSGGEqQRVq 145 (259)
T COG4559 73 LARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAG-------RDYRTLSGGEQQRVQ 145 (259)
T ss_pred HHHHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhc-------cchhhcCchHHHHHH
Confidence 3899998765 8899999999986322 1233444444444445554443 446789999999999
Q ss_pred HHHHHcc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhh-hcCCEEEEEeCCeEEEccCh
Q 000720 731 LARAVYS------NSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKY 803 (1333)
Q Consensus 731 LARAl~~------~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l-~~aD~i~vl~~G~i~~~g~~ 803 (1333)
|||.|.+ ++++++||||||+||...+.++++....-..+|..|+.|-||++.. .+||+|++|++|+++..|++
T Consensus 146 lARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p 225 (259)
T COG4559 146 LARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSP 225 (259)
T ss_pred HHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCH
Confidence 9999986 5569999999999999999988876555556789999999999986 57999999999999999999
Q ss_pred HHHHh
Q 000720 804 EDLIA 808 (1333)
Q Consensus 804 ~~l~~ 808 (1333)
++.+.
T Consensus 226 ~~vlt 230 (259)
T COG4559 226 QDVLT 230 (259)
T ss_pred HHhcC
Confidence 99986
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=309.57 Aligned_cols=203 Identities=20% Similarity=0.277 Sum_probs=158.7
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|+++.|+.. ..+++ ||++++||+++|+||||||||||+++|+|+.+|.+|++ .++|
T Consensus 3 ~l~~~~l~~~~~~~--------~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~ 73 (253)
T TIGR02323 3 LLQVSGLSKSYGGG--------KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTA-TYIMRSGAELELY 73 (253)
T ss_pred eEEEeeeEEEeCCc--------eEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EEecccccccccc
Confidence 48899999999643 47899 99999999999999999999999999999999999986 4432
Q ss_pred -------------eEEEEcCCCC--C-CCCCHHHHhccCC-----cCCHHHHHHHHHHcccchHHHhhcCCCccccCCCC
Q 000720 660 -------------KKAYVPQSSW--I-QTGTIRENILFGK-----DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1333)
Q Consensus 660 -------------~iayv~Q~~~--i-~~~Tv~enI~~g~-----~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g 718 (1333)
.++|++|++. + +..|+.||+.+.. .......+++ .+-++.+... .+..+..+
T Consensus 74 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~------~~~l~~l~l~-~~~~~~~~ 146 (253)
T TIGR02323 74 QLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAA------HDWLEEVEID-PTRIDDLP 146 (253)
T ss_pred cCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHH------HHHHHHcCCC-hhhhhcCc
Confidence 3799999974 2 3458899985421 1111111111 1112222111 13456778
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhhc-CCEEEEEeCCe
Q 000720 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGK 796 (1333)
Q Consensus 719 ~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~~-aD~i~vl~~G~ 796 (1333)
.+||||||||++||||++++|+++||||||++||+.+.+.+.+.+.+... .+.|+|++||+++++.. ||++++|++|+
T Consensus 147 ~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~ 226 (253)
T TIGR02323 147 RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGR 226 (253)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 89999999999999999999999999999999999998887765444333 37999999999999874 99999999999
Q ss_pred EEEccChHHHHh
Q 000720 797 IEQSGKYEDLIA 808 (1333)
Q Consensus 797 i~~~g~~~~l~~ 808 (1333)
+++.|+.+++..
T Consensus 227 i~~~~~~~~~~~ 238 (253)
T TIGR02323 227 VVESGLTDQVLD 238 (253)
T ss_pred EEEECCHHHHhc
Confidence 999999988865
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=310.19 Aligned_cols=206 Identities=24% Similarity=0.318 Sum_probs=163.2
Q ss_pred CccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEEC--------
Q 000720 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH-------- 658 (1333)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~-------- 658 (1333)
...++++|++++++. .+.++| ||++++||+++|+|+||||||||+++|+|+.+|++|++ .++
T Consensus 8 ~~~i~~~~~~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v-~~~G~~~~~g~ 78 (257)
T PRK14246 8 EDVFNISRLYLYIND--------KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKI-KVDGKVLYFGK 78 (257)
T ss_pred hhheeeeeEEEecCC--------ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCce-eEcCEEEECCc
Confidence 346999999999864 357999 99999999999999999999999999999999998754 322
Q ss_pred -----------CeEEEEcCCCCCCC-CCHHHHhccCCc---C-CHHHH----HHHHHHcccchHHHhhcCCCccccCCCC
Q 000720 659 -----------GKKAYVPQSSWIQT-GTIRENILFGKD---M-RQSFY----EEVLEGCALNQDIEMWADGDLSVVGERG 718 (1333)
Q Consensus 659 -----------g~iayv~Q~~~i~~-~Tv~enI~~g~~---~-~~~~~----~~v~~~~~l~~d~~~~~~g~~t~ig~~g 718 (1333)
.+++|++|+|.++. .|++||+.++.. . .++.. .+.++..++.+.+ ....++.+
T Consensus 79 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~ 151 (257)
T PRK14246 79 DIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEV-------YDRLNSPA 151 (257)
T ss_pred ccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccc-------hhhhcCCc
Confidence 24799999998765 599999987532 1 11111 2222222222111 12245678
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeE
Q 000720 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKI 797 (1333)
Q Consensus 719 ~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i 797 (1333)
..||||||||++||||++++|++++|||||++||+.+.+.+.+ ++....++.|+|++||+++++. .||++++|++|++
T Consensus 152 ~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i 230 (257)
T PRK14246 152 SQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEK-LITELKNEIAIVIVSHNPQQVARVADYVAFLYNGEL 230 (257)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHH-HHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 8999999999999999999999999999999999999877765 4455555799999999999985 5999999999999
Q ss_pred EEccChHHHHhhc
Q 000720 798 EQSGKYEDLIADQ 810 (1333)
Q Consensus 798 ~~~g~~~~l~~~~ 810 (1333)
++.|+.+++.+++
T Consensus 231 ~~~g~~~~~~~~~ 243 (257)
T PRK14246 231 VEWGSSNEIFTSP 243 (257)
T ss_pred EEECCHHHHHhCC
Confidence 9999999887633
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-33 Score=307.23 Aligned_cols=200 Identities=28% Similarity=0.380 Sum_probs=154.1
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCc---CCCCcEEEECC------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP---RISGAAIKVHG------ 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~---~~~G~~i~~~g------ 659 (1333)
.+.++|++|.++..+ ...+.++| ||++++||+++|+||||||||||+++|+|+++ |++|++ .++|
T Consensus 3 ~~~~~~~~~~~~~~~----~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i-~~~g~~~~~~ 77 (226)
T cd03234 3 VLPWWDVGLKAKNWN----KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQI-LFNGQPRKPD 77 (226)
T ss_pred cceeecceeeeecCc----cccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEE-EECCEECChH
Confidence 356899999997531 13578999 99999999999999999999999999999999 899986 5554
Q ss_pred ----eEEEEcCCCCCCCC-CHHHHhccCCcCC-----HHHHH-HHHHHcccchHHHhhcCCCc-cccCCCCCCCChHHHH
Q 000720 660 ----KKAYVPQSSWIQTG-TIRENILFGKDMR-----QSFYE-EVLEGCALNQDIEMWADGDL-SVVGERGINLSGGQKQ 727 (1333)
Q Consensus 660 ----~iayv~Q~~~i~~~-Tv~enI~~g~~~~-----~~~~~-~v~~~~~l~~d~~~~~~g~~-t~ig~~g~~LSGGQkq 727 (1333)
.++|++|++.+++. |++||+.++.... ..... +..+. ..++.... ....+...+|||||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~-------~~l~~~~l~~~~~~~~~~LS~G~~q 150 (226)
T cd03234 78 QFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVED-------VLLRDLALTRIGGNLVKGISGGERR 150 (226)
T ss_pred HhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHH-------HHHHhhcchhhhcccccCcCHHHHH
Confidence 48999999987664 9999998753211 00000 00000 01222222 2234567899999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCch-hhh-hcCCEEEEEeCCeEEEcc
Q 000720 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQL-EFL-DAADLVLVMKDGKIEQSG 801 (1333)
Q Consensus 728 Rv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~-~~l-~~aD~i~vl~~G~i~~~g 801 (1333)
|++||||++++|+++||||||++||+.++..+.+.+.+...+++|+|++||++ +.+ +.||++++|++|++++.|
T Consensus 151 rl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 151 RVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999998877764443334578999999998 455 569999999999998765
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=305.37 Aligned_cols=187 Identities=27% Similarity=0.357 Sum_probs=148.9
Q ss_pred ccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcC----CCCcEEEECC-----------eEEEEcCCCC--CC-CCC
Q 000720 614 LTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR----ISGAAIKVHG-----------KKAYVPQSSW--IQ-TGT 674 (1333)
Q Consensus 614 L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~----~~G~~i~~~g-----------~iayv~Q~~~--i~-~~T 674 (1333)
+++ |+++++||+++|+||||||||||+++|+|+++| ++|++ .++| .++|++|++. +. ..|
T Consensus 2 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i-~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 2 VQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEI-LLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEE-EECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 678 999999999999999999999999999999998 89986 5544 5899999984 32 369
Q ss_pred HHHHhccCCcC----CH---HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCC
Q 000720 675 IRENILFGKDM----RQ---SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDP 747 (1333)
Q Consensus 675 v~enI~~g~~~----~~---~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP 747 (1333)
+.||+.+.... .. ++..+.++.+++.+ + .+..++.+.+||||||||++||||++++|+++|||||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~-~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLGKLSKQARALILEALEAVGLPD-------P-EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCc-------h-HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 99998653211 11 12333444443321 0 1234567889999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhh-cCCEEEEEeCCeEEEccChHHHHhh
Q 000720 748 FSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLIAD 809 (1333)
Q Consensus 748 ~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~~~~l~~~ 809 (1333)
|++||+.+.+.+.+.+.+... .++|+|++||+++.+. .||++++|++|++.+.|+++++...
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 216 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYN 216 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999998877765443333 3789999999999986 5999999999999999999998753
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=302.86 Aligned_cols=184 Identities=29% Similarity=0.421 Sum_probs=147.4
Q ss_pred eeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--------------
Q 000720 595 AGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------------- 659 (1333)
Q Consensus 595 ~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g-------------- 659 (1333)
|.+++|+.. . . | ||++++ |+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 5 ~l~~~~~~~--------~-~-~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~~~~~ 72 (214)
T cd03297 5 DIEKRLPDF--------T-L-KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTI-VLNGTVLFDSRKKINLPP 72 (214)
T ss_pred eeeEecCCe--------e-e-CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEecccccchhhhhh
Confidence 677777542 2 2 8 999999 9999999999999999999999999999986 4443
Q ss_pred ---eEEEEcCCCCCC-CCCHHHHhccCCcC-C----HHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHH
Q 000720 660 ---KKAYVPQSSWIQ-TGTIRENILFGKDM-R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1333)
Q Consensus 660 ---~iayv~Q~~~i~-~~Tv~enI~~g~~~-~----~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~ 730 (1333)
.++|++|++.++ +.|++||+.++... . +++.++.++..++. ...++++.+||||||||++
T Consensus 73 ~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv~ 141 (214)
T cd03297 73 QQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLD-----------HLLNRYPAQLSGGEKQRVA 141 (214)
T ss_pred HhhcEEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCH-----------hHhhcCcccCCHHHHHHHH
Confidence 479999999876 46999999875432 1 12223333433332 2334678899999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhh-cCCEEEEEeCCeEEEcc
Q 000720 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSG 801 (1333)
Q Consensus 731 LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g 801 (1333)
||||++.+|+++||||||++||+.+.+.+.+.+.+...+ ++|+|++||+++.+. .||++++|++|++++.|
T Consensus 142 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 142 LARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999988877654443344 789999999999985 59999999999998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=298.19 Aligned_cols=176 Identities=24% Similarity=0.400 Sum_probs=146.3
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCC--cCCCCcEEEECC-------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEI--PRISGAAIKVHG------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~--~~~~G~~i~~~g------- 659 (1333)
.++++|++|+|+.... ....+.+++ |+++++||+++|+||||||||||+++|+|+. +|.+|++ .++|
T Consensus 3 ~l~~~~ls~~~~~~~~--~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i-~~~g~~~~~~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPS--KSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEV-LINGRPLDKRS 79 (194)
T ss_pred EEEEEeeEEEEecCCC--cccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEE-EECCEeCchHh
Confidence 4889999999974200 012468999 9999999999999999999999999999999 9999986 5544
Q ss_pred ---eEEEEcCCCCCCC-CCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHH
Q 000720 660 ---KKAYVPQSSWIQT-GTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (1333)
Q Consensus 660 ---~iayv~Q~~~i~~-~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl 735 (1333)
.++|++|++.++. .|++||+.++... .+||||||||++||||+
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~---------------------------------~~LS~G~~qrv~laral 126 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAAKL---------------------------------RGLSGGERKRVSIALEL 126 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHHHh---------------------------------ccCCHHHHHHHHHHHHH
Confidence 4799999987664 6999999643110 08999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchh-hhh-cCCEEEEEeCCeEEEcc
Q 000720 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLE-FLD-AADLVLVMKDGKIEQSG 801 (1333)
Q Consensus 736 ~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~-~l~-~aD~i~vl~~G~i~~~g 801 (1333)
+.+|+++||||||++||+.+.+.+.+.+.+...+++|+|++||+++ .+. .||++++|++|++++.|
T Consensus 127 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 127 VSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 9999999999999999999988877654433345899999999996 554 59999999999998654
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-30 Score=297.04 Aligned_cols=387 Identities=16% Similarity=0.107 Sum_probs=267.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCcchhHHHHhccHHHHHhHHHHHHHHHHHHHHH
Q 000720 935 FLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQ 1014 (1333)
Q Consensus 935 ~l~~~~~i~~~~~~~~~~~~~~~~s~~L~~~ll~~il~ap~~fFd~tp~GrIlnRfs~Di~~vd~~l~~~l~~~~~~~~~ 1014 (1333)
++.++..++-.+|+..+..++.+.-..+..+.|...+++|..-=...+....+ +|++++..++...-...+...=-
T Consensus 71 ~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~L----rDL~qvR~Fltg~g~~A~fDaPW 146 (580)
T COG4618 71 GLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAPLLRRGSGDGLQPL----RDLDQVRQFLTGTGLTAFFDAPW 146 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHhhcCCCccccch----hhHHHHHHHHcCCCcchhcCCch
Confidence 34455677888999999999999999999999999988887643333333333 48888888876533222222222
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhchHHHHHHHHhcchHHHHhcccHHHHHHHHHH
Q 000720 1015 LLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHS 1094 (1333)
Q Consensus 1015 ~l~~ivv~~~~~~~l~lv~ipl~~~~~~~~~~y~~~srel~rl~~~~~spl~~~~~Etl~G~~tIRaf~~e~~f~~~~~~ 1094 (1333)
.-.-+++++...|++.++.+.-.++.+.+...--...|+--+...+....-.++..-+..+..+|+|.|..++..+++.+
T Consensus 147 ~P~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~ 226 (580)
T COG4618 147 MPLYLAVIFLFHPWLGLIALAGAIILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGR 226 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHH
Confidence 22233445555666665544433333222222222333333444555566678888999999999999998888777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000720 1095 LIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIIL-VTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKM 1173 (1333)
Q Consensus 1095 ~~d~~~~~~~~~~~~~~wl~~rl~ll~~~~~~~~~~~~-~~~~~~~~~~g~~gl~l~y~l~l~~~l~~~v~~~~~le~~~ 1173 (1333)
....+....-...-.+.-++...-.+-.+.-..++..+ .+...+.+++|.+-..-...-..-.++-..+..|.+.-...
T Consensus 227 ~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar 306 (580)
T COG4618 227 FNAAYLSAQERASDRNGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAAR 306 (580)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHH
Confidence 66655544333322222222221111111222222222 23345677777543322222223344566788899999999
Q ss_pred hHHHHHHHhhcCCCCCCcccCCCCCCCCCCCcccEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHH
Q 000720 1174 ISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQ 1253 (1333)
Q Consensus 1174 ~SveRI~~~~~~p~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~ 1253 (1333)
.|..|+.+.++..++..... ..|. .+|.+..+++++.=++...++|+||||+++|||-+|||||||||||||.+
T Consensus 307 ~s~~Rl~~lL~~~p~~~~~m---~LP~---P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR 380 (580)
T COG4618 307 QSYKRLNELLAELPAAAERM---PLPA---PQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLAR 380 (580)
T ss_pred HHHHHHHHHHHhCccccCCC---CCCC---CCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHH
Confidence 99999999987544432111 1111 26999999999865555558999999999999999999999999999999
Q ss_pred HHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeEecccccccccchhhhcCCCC-CCCHHHHHHHHHhCCCCcccccCC
Q 000720 1254 ALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLE-QHSDQEIWEVKISKLLTHKSYQCE 1331 (1333)
Q Consensus 1254 lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isiVpQdp~LF~GTIR~NLdp~~-~~sDeeI~~aL~~~~L~~~~~~~~ 1331 (1333)
+|.+.+.|.+|.|.+||-|+++.+.++|=++|||.|||--||+|||+|||.-|+ +.++|.|.||.+.++.+|.+...|
T Consensus 381 ~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP 459 (580)
T COG4618 381 LLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLP 459 (580)
T ss_pred HHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCc
Confidence 999999999999999999999999999999999999999999999999998766 788888999999999988765443
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-33 Score=307.76 Aligned_cols=181 Identities=31% Similarity=0.438 Sum_probs=145.3
Q ss_pred ccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCe--------EEEEcCCCCCCC-CCHHHHhccCC
Q 000720 614 LTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------KAYVPQSSWIQT-GTIRENILFGK 683 (1333)
Q Consensus 614 L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~--------iayv~Q~~~i~~-~Tv~enI~~g~ 683 (1333)
+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|+ .+|++|++.++. .|++||+.++.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~ 79 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGV-ILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAV 79 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEECCCCChhheEEecCcccCCCCCHHHHHHHHH
Confidence 467 99999999999999999999999999999999999986 67663 489999987665 79999998742
Q ss_pred -----cCCHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHH
Q 000720 684 -----DMRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAH 754 (1333)
Q Consensus 684 -----~~~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~ 754 (1333)
..++. +.++.++.+++. ...+..+.+||||||||++||||++++|+++||||||++||+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~ 148 (230)
T TIGR01184 80 DRVLPDLSKSERRAIVEEHIALVGLT-----------EAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDAL 148 (230)
T ss_pred HhcccCCCHHHHHHHHHHHHHHcCCH-----------HHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHH
Confidence 12211 122333333332 1234567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChHHH
Q 000720 755 TGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDL 806 (1333)
Q Consensus 755 ~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~~l 806 (1333)
..+.+.+.+.+...+ ++|+|++||+++.+.. ||+|++|++|++++.|+..++
T Consensus 149 ~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 149 TRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 988887654443333 7899999999998754 999999999999988865544
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=303.58 Aligned_cols=191 Identities=30% Similarity=0.384 Sum_probs=153.3
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|+++.|+..+ .....+++ ||++++||+++|+|+||||||||+++|+|.++|++|++ .++|
T Consensus 2 l~~~~l~~~~~~~~----~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 76 (220)
T TIGR02982 2 ISIRNLNHYYGHGS----LRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSL-KVLGQELYGASEKE 76 (220)
T ss_pred EEEEEEEEEccCCC----cceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE-EECCEEhHhcCHhH
Confidence 68899999996430 12468999 99999999999999999999999999999999999986 5543
Q ss_pred ------eEEEEcCCCCCCC-CCHHHHhccCCcC----CHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChH
Q 000720 660 ------KKAYVPQSSWIQT-GTIRENILFGKDM----RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1333)
Q Consensus 660 ------~iayv~Q~~~i~~-~Tv~enI~~g~~~----~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGG 724 (1333)
.++|++|++.++. .|+.||+.++... ..+ +..+.++.+++.+ .....+.+||||
T Consensus 77 ~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~lS~G 145 (220)
T TIGR02982 77 LVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGD-----------HLDYYPHNLSGG 145 (220)
T ss_pred HHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChh-----------hhhcChhhCCHH
Confidence 4799999997765 7999999875421 111 2333344443322 234567799999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhhcCCEEEEEeCCeE
Q 000720 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLVMKDGKI 797 (1333)
Q Consensus 725 QkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~~aD~i~vl~~G~i 797 (1333)
||||++||||++++|+++||||||++||+.++..+.+.+.+... +++|+|++||+++..+.||+|++|++|++
T Consensus 146 ~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 146 QKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 99999999999999999999999999999998887765433333 47999999999997777999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=279.44 Aligned_cols=194 Identities=26% Similarity=0.401 Sum_probs=155.3
Q ss_pred EEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCe--------EE
Q 000720 592 DIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------KA 662 (1333)
Q Consensus 592 ~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~--------ia 662 (1333)
.+.+.+.+|+.. ..+.++| |++|.+||.++++||+||||||||+.++|+++|..|.+ .++++ -|
T Consensus 5 ~~~~~sl~y~g~------~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i-~l~~r~i~gPgaerg 77 (259)
T COG4525 5 NVSHLSLSYEGK------PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSI-QLNGRRIEGPGAERG 77 (259)
T ss_pred ehhheEEecCCc------chhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceE-EECCEeccCCCccce
Confidence 345677788764 3568999 99999999999999999999999999999999999986 77765 49
Q ss_pred EEcCCCCC-CCCCHHHHhccCCcCC---HH-HH---HHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHH
Q 000720 663 YVPQSSWI-QTGTIRENILFGKDMR---QS-FY---EEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734 (1333)
Q Consensus 663 yv~Q~~~i-~~~Tv~enI~~g~~~~---~~-~~---~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARA 734 (1333)
.|+|++-+ +-.|+.||+.||.... +. +. .+.+...+|.+ .-.....+||||||||+.||||
T Consensus 78 vVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~-----------~~~~~i~qLSGGmrQRvGiARA 146 (259)
T COG4525 78 VVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEG-----------AEHKYIWQLSGGMRQRVGIARA 146 (259)
T ss_pred eEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCccc-----------ccccceEeecchHHHHHHHHHH
Confidence 99999764 5579999999996532 22 21 22222222221 1125678999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhh-cCCEEEEEe--CCeEEEccCh
Q 000720 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMK--DGKIEQSGKY 803 (1333)
Q Consensus 735 l~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~-~aD~i~vl~--~G~i~~~g~~ 803 (1333)
|..+|+.++||||++|||+-+++++-+.++..+. .||.+++|||++++.- -|++++||. .|+|++.-++
T Consensus 147 La~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~ 219 (259)
T COG4525 147 LAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPL 219 (259)
T ss_pred hhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCC
Confidence 9999999999999999999998887665555554 5899999999999864 599999997 6899876444
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-32 Score=297.44 Aligned_cols=180 Identities=23% Similarity=0.292 Sum_probs=146.0
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCc---CCCCcEEEECC------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP---RISGAAIKVHG------ 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~---~~~G~~i~~~g------ 659 (1333)
.+.++|++|.|+... ...+.+++ ||++++||+++|+||||||||||+++|+|+++ |++|++ .++|
T Consensus 3 ~~~~~~~~~~~~~~~----~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i-~i~g~~~~~~ 77 (202)
T cd03233 3 TLSWRNISFTTGKGR----SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDI-HYNGIPYKEF 77 (202)
T ss_pred eEEEEccEEEeccCC----CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEE-EECCEECccc
Confidence 368999999998641 24568999 99999999999999999999999999999999 889976 5544
Q ss_pred ------eEEEEcCCCCCCC-CCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHH
Q 000720 660 ------KKAYVPQSSWIQT-GTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732 (1333)
Q Consensus 660 ------~iayv~Q~~~i~~-~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LA 732 (1333)
.++|++|++.++. .|++||+.++.... ..++...||||||||++||
T Consensus 78 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---------------------------~~~~~~~LS~Ge~qrl~la 130 (202)
T cd03233 78 AEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK---------------------------GNEFVRGISGGERKRVSIA 130 (202)
T ss_pred hhhhcceEEEEecccccCCCCcHHHHHhhhhhhc---------------------------cccchhhCCHHHHHHHHHH
Confidence 4799999987654 69999997643110 2246679999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEec-Cchhhh-hcCCEEEEEeCCeEEEcc
Q 000720 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTT-HQLEFL-DAADLVLVMKDGKIEQSG 801 (1333)
Q Consensus 733 RAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvt-H~~~~l-~~aD~i~vl~~G~i~~~g 801 (1333)
||++++|+++||||||++||+.+++.+.+.+.+...+ +.|+|+++ |+.+.+ +.||++++|++|++++.|
T Consensus 131 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 131 EALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 9999999999999999999999988777644333333 56766655 555666 459999999999998754
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=290.33 Aligned_cols=157 Identities=40% Similarity=0.654 Sum_probs=139.5
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|+++.|+.. ....+++ ||++++||+++|+||||||||||+++|+|+.+|.+|++ .++|
T Consensus 1 l~~~~l~~~~~~~------~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i-~~~g~~~~~~~~~~ 73 (171)
T cd03228 1 IEFKNVSFSYPGR------PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI-LIDGVDLRDLDLES 73 (171)
T ss_pred CEEEEEEEEcCCC------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEE-EECCEEhhhcCHHH
Confidence 4688999999643 2357999 99999999999999999999999999999999999986 5554
Q ss_pred ---eEEEEcCCCCCCCCCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHc
Q 000720 660 ---KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY 736 (1333)
Q Consensus 660 ---~iayv~Q~~~i~~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~ 736 (1333)
.++|++|++.+++.|++||+ ||||||||++||||++
T Consensus 74 ~~~~i~~~~~~~~~~~~t~~e~l-----------------------------------------LS~G~~~rl~la~al~ 112 (171)
T cd03228 74 LRKNIAYVPQDPFLFSGTIRENI-----------------------------------------LSGGQRQRIAIARALL 112 (171)
T ss_pred HHhhEEEEcCCchhccchHHHHh-----------------------------------------hCHHHHHHHHHHHHHh
Confidence 37999999988888999997 9999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCe
Q 000720 737 SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGK 796 (1333)
Q Consensus 737 ~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~ 796 (1333)
.+|+++||||||++||+...+++.+. ++...+++|+|++||+++.++.||++++|++|+
T Consensus 113 ~~p~llllDEP~~gLD~~~~~~l~~~-l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 113 RDPPILILDEATSALDPETEALILEA-LRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHH-HHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 99999999999999999998877654 444556799999999999987799999999985
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=295.56 Aligned_cols=174 Identities=24% Similarity=0.345 Sum_probs=145.6
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCC--cCCCCcEEEECC-------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEI--PRISGAAIKVHG------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~--~~~~G~~i~~~g------- 659 (1333)
.++++|+++.|+... ...+.+++ |+++++||+++|+||||||||||+++|+|.. +|++|++ .++|
T Consensus 3 ~l~~~~l~~~~~~~~----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i-~~~g~~~~~~~ 77 (192)
T cd03232 3 VLTWKNLNYTVPVKG----GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEI-LINGRPLDKNF 77 (192)
T ss_pred EEEEeeeEEEecCCC----CceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEE-EECCEehHHHh
Confidence 588999999997520 12468999 9999999999999999999999999999986 4789986 6654
Q ss_pred --eEEEEcCCCCCCC-CCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHc
Q 000720 660 --KKAYVPQSSWIQT-GTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY 736 (1333)
Q Consensus 660 --~iayv~Q~~~i~~-~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~ 736 (1333)
.++|++|++.++. .|++||+.++.. .+ +||||||||++||||++
T Consensus 78 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~---------~~------------------------~LSgGe~qrv~la~al~ 124 (192)
T cd03232 78 QRSTGYVEQQDVHSPNLTVREALRFSAL---------LR------------------------GLSVEQRKRLTIGVELA 124 (192)
T ss_pred hhceEEecccCccccCCcHHHHHHHHHH---------Hh------------------------cCCHHHhHHHHHHHHHh
Confidence 4799999987655 699999975310 00 89999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhh-h-hcCCEEEEEeC-CeEEEcc
Q 000720 737 SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEF-L-DAADLVLVMKD-GKIEQSG 801 (1333)
Q Consensus 737 ~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~-l-~~aD~i~vl~~-G~i~~~g 801 (1333)
.+|++++|||||++||+.+.+.+.+.+.+...+++|+|++||+++. + ..||++++|++ |++++.|
T Consensus 125 ~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 125 AKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred cCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 9999999999999999999888876544333457999999999984 4 56999999999 9998765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-32 Score=291.94 Aligned_cols=159 Identities=36% Similarity=0.451 Sum_probs=139.0
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
|+++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 1 i~~~~l~~~~~~--------~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 71 (178)
T cd03229 1 LELKNVSKRYGQ--------KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSI-LIDGEDLTDLEDEL 71 (178)
T ss_pred CEEEEEEEEECC--------eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEEccccchhH
Confidence 468999999863 358999 99999999999999999999999999999999999986 4433
Q ss_pred -----eEEEEcCCCCCC-CCCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHH
Q 000720 660 -----KKAYVPQSSWIQ-TGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733 (1333)
Q Consensus 660 -----~iayv~Q~~~i~-~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LAR 733 (1333)
.++|++|+|.++ +.|++||+.+. ||||||||++|||
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~t~~~~l~~~--------------------------------------lS~G~~qr~~la~ 113 (178)
T cd03229 72 PPLRRRIGMVFQDFALFPHLTVLENIALG--------------------------------------LSGGQQQRVALAR 113 (178)
T ss_pred HHHhhcEEEEecCCccCCCCCHHHheeec--------------------------------------CCHHHHHHHHHHH
Confidence 478999998765 46999998753 9999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhh-cCCEEEEEeCCe
Q 000720 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLD-AADLVLVMKDGK 796 (1333)
Q Consensus 734 Al~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~-~aD~i~vl~~G~ 796 (1333)
|++++|++++|||||++||+.++..+.+.+.+...+ ++|+|++||++++++ .||++++|++|+
T Consensus 114 al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 114 ALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred HHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 999999999999999999999988887654443344 689999999999987 599999999985
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-32 Score=321.62 Aligned_cols=203 Identities=20% Similarity=0.246 Sum_probs=163.3
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCeEEEEcCC
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQS 667 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~iayv~Q~ 667 (1333)
..++++|.+|.++.. ...+.|++ ||++++|++++|+||||||||||+++|+|+++|++|++ .++|...++.+.
T Consensus 20 ~mL~lknL~~~~~~~-----~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI-~I~G~~~~i~~~ 93 (549)
T PRK13545 20 PFDKLKDLFFRSKDG-----EYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTV-DIKGSAALIAIS 93 (549)
T ss_pred ceeEEEEEEEecCCC-----ccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEE-EECCEeeeEEec
Confidence 358889998888754 33468999 99999999999999999999999999999999999996 888876666665
Q ss_pred CCC-CCCCHHHHhccCCc---CCHHH----HHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCC
Q 000720 668 SWI-QTGTIRENILFGKD---MRQSF----YEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNS 739 (1333)
Q Consensus 668 ~~i-~~~Tv~enI~~g~~---~~~~~----~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~ 739 (1333)
+.+ ...|++||+.++.. .+... ..++++.+++.+ ....++.+||||||||++||||++.+|
T Consensus 94 ~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~-----------~ld~~~~~LSGGQrQRVaLArAL~~~P 162 (549)
T PRK13545 94 SGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGK-----------FIYQPVKTYSSGMKSRLGFAISVHINP 162 (549)
T ss_pred cccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChh-----------HhhCCcccCCHHHHHHHHHHHHHHhCC
Confidence 544 45699999986432 22221 122333333322 234567899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChHHHHh
Q 000720 740 DVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 740 ~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
+++||||||++||+.+.+.+++.+.+...+++|+|++||+++++.. ||++++|++|++++.|+++++..
T Consensus 163 ~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~ 232 (549)
T PRK13545 163 DILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVD 232 (549)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999888776543333457899999999999865 99999999999999999998876
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=273.59 Aligned_cols=194 Identities=27% Similarity=0.358 Sum_probs=160.8
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.|++++.+.+-.+.. .+-.+|++ ++.|++||.++||||+||||||||..++|+..|++|++ .+.|
T Consensus 6 ii~~~~l~ktvg~~~----~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV-~l~G~~L~~ldEd 80 (228)
T COG4181 6 IIEVHHLSKTVGQGE----GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEV-RLLGQPLHKLDED 80 (228)
T ss_pred eeehhhhhhhhcCCC----cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceE-EEcCcchhhcCHH
Confidence 467777766665441 34578999 99999999999999999999999999999999999997 5543
Q ss_pred --------eEEEEcCCCC-CCCCCHHHHhccCCcCCH-------HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCCh
Q 000720 660 --------KKAYVPQSSW-IQTGTIRENILFGKDMRQ-------SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1333)
Q Consensus 660 --------~iayv~Q~~~-i~~~Tv~enI~~g~~~~~-------~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSG 723 (1333)
++|+|+|.-. +++.|..||+....+... ..-++.+++.+|.+ .+.-.+.+|||
T Consensus 81 ~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~-----------Rl~HyP~qLSG 149 (228)
T COG4181 81 ARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGK-----------RLTHYPAQLSG 149 (228)
T ss_pred HHHHhhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCccc-----------ccccCccccCc
Confidence 5899999965 689999999987654432 12334455555543 33456789999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEecCchhhhhcCCEEEEEeCCeEEE
Q 000720 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQ 799 (1333)
Q Consensus 724 GQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~-~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~ 799 (1333)
|++|||+||||+...|+|++-||||.+||..+++++.+.++... .+|.|.|+||||......|||++-|.+|++++
T Consensus 150 GEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 150 GEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred hHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceecc
Confidence 99999999999999999999999999999999999988776543 35889999999999999999999999999975
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-32 Score=321.38 Aligned_cols=220 Identities=25% Similarity=0.363 Sum_probs=173.5
Q ss_pred CccEEEeeeEEEcCCccccc---CCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----
Q 000720 588 DVAIDIEAGEYAWDAREENF---KKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---- 659 (1333)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~---~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---- 659 (1333)
+..++++|.+..|.....-+ ......++| ||++++||++||||++|||||||.++|+|+.+|++|.+ .++|
T Consensus 278 ~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i-~~~g~~~~ 356 (539)
T COG1123 278 EPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSI-IFDGQDLD 356 (539)
T ss_pred CceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EEeCcccc
Confidence 44678999999998642111 123456888 99999999999999999999999999999999988876 5544
Q ss_pred -----------eEEEEcCCCC--C-CCCCHHHHhccCCc----CC-H---HHHHHHHHHcccchHHHhhcCCCccccCCC
Q 000720 660 -----------KKAYVPQSSW--I-QTGTIRENILFGKD----MR-Q---SFYEEVLEGCALNQDIEMWADGDLSVVGER 717 (1333)
Q Consensus 660 -----------~iayv~Q~~~--i-~~~Tv~enI~~g~~----~~-~---~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~ 717 (1333)
++-+++|+|. + +..||+++|.-... .. . ++..+.++..+|..+ ..+++
T Consensus 357 ~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~----------~l~ry 426 (539)
T COG1123 357 LTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPE----------FLDRY 426 (539)
T ss_pred cccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHH----------HHhcC
Confidence 3568999985 3 56799999974322 11 1 223333555555432 34578
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhhc-CCEEEEEeCC
Q 000720 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDG 795 (1333)
Q Consensus 718 g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~~-aD~i~vl~~G 795 (1333)
+.+|||||||||+|||||+.+|+++++|||+|+||+.++.++.+.+.+... -|-|.|+||||+.++++ ||||+||++|
T Consensus 427 P~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G 506 (539)
T COG1123 427 PHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDG 506 (539)
T ss_pred chhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECC
Confidence 999999999999999999999999999999999999999999875544333 37899999999999987 9999999999
Q ss_pred eEEEccChHHHHhhcchHHHHHH
Q 000720 796 KIEQSGKYEDLIADQNSELVRQM 818 (1333)
Q Consensus 796 ~i~~~g~~~~l~~~~~~~~~~~~ 818 (1333)
+|++.|+.+++.+.+..++.+.+
T Consensus 507 ~iVE~G~~~~v~~~p~h~Ytr~L 529 (539)
T COG1123 507 RIVEEGPTEKVFENPQHPYTRKL 529 (539)
T ss_pred eEEEeCCHHHHhcCCCChHHHHH
Confidence 99999999999886666665544
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-32 Score=298.98 Aligned_cols=180 Identities=29% Similarity=0.366 Sum_probs=143.4
Q ss_pred EeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC------------
Q 000720 593 IEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------------ 659 (1333)
Q Consensus 593 i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g------------ 659 (1333)
++|+++.|+. .+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 1 i~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~~~ 71 (206)
T TIGR03608 1 LKNISKKFGD--------KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQV-YLNGKETPPLNSKKAS 71 (206)
T ss_pred CcceEEEECC--------EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEE-EECCEEccccchhhHH
Confidence 4678888853 358999 99999999999999999999999999999999999986 4432
Q ss_pred -----eEEEEcCCCCCCC-CCHHHHhccCCcC---CH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHH
Q 000720 660 -----KKAYVPQSSWIQT-GTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1333)
Q Consensus 660 -----~iayv~Q~~~i~~-~Tv~enI~~g~~~---~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQk 726 (1333)
.++|++|++.++. .|++||+.++... .. ++.++.++..++. ...++...+||||||
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~lS~G~~ 140 (206)
T TIGR03608 72 KFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLN-----------LKLKQKIYELSGGEQ 140 (206)
T ss_pred HHHHhCeeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCch-----------hhhcCChhhCCHHHH
Confidence 4799999988765 7999999875321 11 1222333333332 123456789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEE
Q 000720 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVM 792 (1333)
Q Consensus 727 qRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl 792 (1333)
||++||||++++|+++||||||++||+.+.+.+.+.+.+...+++|+|++||+++.+..||++++|
T Consensus 141 qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 141 QRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 999999999999999999999999999998877765433333589999999999988789999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-32 Score=342.06 Aligned_cols=215 Identities=20% Similarity=0.270 Sum_probs=167.2
Q ss_pred ccEEEeeeEEEcCCccccc---CCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC-----
Q 000720 589 VAIDIEAGEYAWDAREENF---KKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----- 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~---~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g----- 659 (1333)
..++++|++++|+.+...+ ......+++ ||+|++||+++|+|+||||||||+++|+|+++|++|++ .++|
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I-~~~g~~i~~ 390 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEI-IFNGQRIDT 390 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEE-EECCEECCc
Confidence 3599999999996320000 011357899 99999999999999999999999999999999999986 5544
Q ss_pred -----------eEEEEcCCCC--C-CCCCHHHHhccCCc---C-CH----HHHHHHHHHcccchHHHhhcCCCccccCCC
Q 000720 660 -----------KKAYVPQSSW--I-QTGTIRENILFGKD---M-RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGER 717 (1333)
Q Consensus 660 -----------~iayv~Q~~~--i-~~~Tv~enI~~g~~---~-~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~ 717 (1333)
+++|++|+|. + +..||.||+.++.. . .. ++..+.++.+++.. ......
T Consensus 391 ~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~----------~~~~~~ 460 (623)
T PRK10261 391 LSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLP----------EHAWRY 460 (623)
T ss_pred CCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCH----------HHhhCC
Confidence 4799999983 4 45799999976421 1 11 12233444444421 123467
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhhc-CCEEEEEeCC
Q 000720 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDA-ADLVLVMKDG 795 (1333)
Q Consensus 718 g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~~-aD~i~vl~~G 795 (1333)
+.+|||||||||+|||||+.+|+++||||||++||+.++.++.+.+.+...+ +.|+|+||||++.+.. ||+|++|++|
T Consensus 461 ~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G 540 (623)
T PRK10261 461 PHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLG 540 (623)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 7899999999999999999999999999999999999998888654443333 7899999999999865 9999999999
Q ss_pred eEEEccChHHHHhhcchHH
Q 000720 796 KIEQSGKYEDLIADQNSEL 814 (1333)
Q Consensus 796 ~i~~~g~~~~l~~~~~~~~ 814 (1333)
+|++.|+.+++..++...+
T Consensus 541 ~iv~~g~~~~i~~~p~~~~ 559 (623)
T PRK10261 541 QIVEIGPRRAVFENPQHPY 559 (623)
T ss_pred EEEEecCHHHHhcCCCCHH
Confidence 9999999999876443333
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.8e-32 Score=291.75 Aligned_cols=205 Identities=22% Similarity=0.335 Sum_probs=161.1
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCe---------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------- 660 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~--------- 660 (1333)
.+.++.+.+|.. -..++| ||++++||+++++|||||||||++++|.|.++|++|++ .++|+
T Consensus 5 L~v~~l~k~FGG--------l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v-~~~G~~it~l~p~~ 75 (250)
T COG0411 5 LEVRGLSKRFGG--------LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTV-IFRGRDITGLPPHR 75 (250)
T ss_pred eeeccceeecCC--------EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceE-EECCcccCCCCHHH
Confidence 456777777753 356888 99999999999999999999999999999999999997 66663
Q ss_pred -----EEEEcCCCCCC-CCCHHHHhccCCcCC--------HH----HHHHHHHHcccchHHHhhc-CCCccccCCCCCCC
Q 000720 661 -----KAYVPQSSWIQ-TGTIRENILFGKDMR--------QS----FYEEVLEGCALNQDIEMWA-DGDLSVVGERGINL 721 (1333)
Q Consensus 661 -----iayv~Q~~~i~-~~Tv~enI~~g~~~~--------~~----~~~~v~~~~~l~~d~~~~~-~g~~t~ig~~g~~L 721 (1333)
++--+|.+-+| +.||.||++.+.... .. ..++..+. -.+.+. .|.....++...+|
T Consensus 76 iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~-----A~~~Le~vgL~~~a~~~A~~L 150 (250)
T COG0411 76 IARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARER-----ARELLEFVGLGELADRPAGNL 150 (250)
T ss_pred HHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHH-----HHHHHHHcCCchhhcchhhcC
Confidence 57889999865 569999999863211 00 01111111 001111 12333445778899
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCCeEEEecCchhhhh-cCCEEEEEeCCeEE
Q 000720 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLD-AADLVLVMKDGKIE 798 (1333)
Q Consensus 722 SGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~--~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~ 798 (1333)
|+|||+|+.|||||+.+|+++|||||.+||.+....++.+. ++.+. .+.|+++|.|||+.+. .||||+||+.|+++
T Consensus 151 syG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~-i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~I 229 (250)
T COG0411 151 SYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAEL-IRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVI 229 (250)
T ss_pred ChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHH-HHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCc
Confidence 99999999999999999999999999999999998888764 44444 3589999999999975 59999999999999
Q ss_pred EccChHHHHhhc
Q 000720 799 QSGKYEDLIADQ 810 (1333)
Q Consensus 799 ~~g~~~~l~~~~ 810 (1333)
.+|+|+|+.+++
T Consensus 230 AeG~P~eV~~dp 241 (250)
T COG0411 230 AEGTPEEVRNNP 241 (250)
T ss_pred ccCCHHHHhcCH
Confidence 999999998743
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.1e-32 Score=290.68 Aligned_cols=159 Identities=28% Similarity=0.462 Sum_probs=137.3
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|++++| .+++ |+++++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 4 ~l~~~~l~~~~------------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~ 70 (182)
T cd03215 4 VLEVRGLSVKG------------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEI-TLDGKPVTRRSPR 70 (182)
T ss_pred EEEEeccEEEe------------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEECCccCHH
Confidence 48888988865 5788 99999999999999999999999999999999999986 5544
Q ss_pred -----eEEEEcCCC----CCCCCCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHH
Q 000720 660 -----KKAYVPQSS----WIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1333)
Q Consensus 660 -----~iayv~Q~~----~i~~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~ 730 (1333)
+++|++|++ ..++.|++||+.++.. ||||||||++
T Consensus 71 ~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~------------------------------------LS~G~~qrl~ 114 (182)
T cd03215 71 DAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL------------------------------------LSGGNQQKVV 114 (182)
T ss_pred HHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh------------------------------------cCHHHHHHHH
Confidence 479999985 3456799999976421 9999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeE
Q 000720 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKI 797 (1333)
Q Consensus 731 LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i 797 (1333)
||||++.+|+++||||||++||+++.+.+.+.+.+...+++|+|++||+++.+.. ||++++|++|++
T Consensus 115 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 115 LARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred HHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999999888776443333457999999999998866 999999999974
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-31 Score=302.37 Aligned_cols=197 Identities=23% Similarity=0.267 Sum_probs=154.9
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCC--CcCCCCcEEEECC-------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGE--IPRISGAAIKVHG------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~--~~~~~G~~i~~~g------- 659 (1333)
.++++|+++.|+. .+.+++ ||++++||+++|+|+||||||||+++|+|+ ++|++|++ .++|
T Consensus 7 ~l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i-~~~g~~~~~~~ 77 (252)
T CHL00131 7 ILEIKNLHASVNE--------NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDI-LFKGESILDLE 77 (252)
T ss_pred eEEEEeEEEEeCC--------EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceE-EECCEEcccCC
Confidence 5999999999963 258999 999999999999999999999999999998 57899986 5543
Q ss_pred -------eEEEEcCCCCCCC-CCHHHHhccCCcC----------CH----HHHHHHHHHcccchHHHhhcCCCccccCCC
Q 000720 660 -------KKAYVPQSSWIQT-GTIRENILFGKDM----------RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGER 717 (1333)
Q Consensus 660 -------~iayv~Q~~~i~~-~Tv~enI~~g~~~----------~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~ 717 (1333)
.++|++|++.++. .|+++|+.++... +. ++..+.++.+++. .+..++.
T Consensus 78 ~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~ 147 (252)
T CHL00131 78 PEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMD----------PSFLSRN 147 (252)
T ss_pred hhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCc----------hhhhccc
Confidence 2679999987665 5899998764211 00 1112223322221 1123455
Q ss_pred CC-CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc--CCEEEEEeC
Q 000720 718 GI-NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA--ADLVLVMKD 794 (1333)
Q Consensus 718 g~-~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~--aD~i~vl~~ 794 (1333)
.. +||||||||++||||++++|+++||||||++||+.+.+.+.+.+.+...+++|+|++||+++++.. ||++++|++
T Consensus 148 ~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~ 227 (252)
T CHL00131 148 VNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQN 227 (252)
T ss_pred cccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeC
Confidence 55 599999999999999999999999999999999999888876443333458999999999999864 899999999
Q ss_pred CeEEEccChHH
Q 000720 795 GKIEQSGKYED 805 (1333)
Q Consensus 795 G~i~~~g~~~~ 805 (1333)
|++++.|+++.
T Consensus 228 G~i~~~~~~~~ 238 (252)
T CHL00131 228 GKIIKTGDAEL 238 (252)
T ss_pred CEEEEecChhh
Confidence 99999998873
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.2e-32 Score=301.65 Aligned_cols=179 Identities=23% Similarity=0.306 Sum_probs=141.7
Q ss_pred cccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC------------eEEEEc-CCCCC-CCCCH
Q 000720 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------------KKAYVP-QSSWI-QTGTI 675 (1333)
Q Consensus 611 ~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g------------~iayv~-Q~~~i-~~~Tv 675 (1333)
.+.|++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++| +++|++ |++.+ +..|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i-~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEV-RVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEE-EECCEEccccchhhcccEEEEcCCccccCCCCcH
Confidence 468999 99999999999999999999999999999999999986 5544 478997 55555 46799
Q ss_pred HHHhccCCc---CCHHH----HHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCC
Q 000720 676 RENILFGKD---MRQSF----YEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPF 748 (1333)
Q Consensus 676 ~enI~~g~~---~~~~~----~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~ 748 (1333)
+||+.+... ..... .++.++.+++. .....+..+||||||||++||||++.+|+++||||||
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLE-----------ELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-----------hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 999976432 11211 12222222221 1233567899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhhc-CCEEEEEeCCeEEEcc
Q 000720 749 SAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1333)
Q Consensus 749 saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g 801 (1333)
++||+.+.+.+.+.+.+... +++|+|++||+++++.. ||++++|++|++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 99999998888765443333 37899999999999865 9999999999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.3e-32 Score=299.08 Aligned_cols=179 Identities=26% Similarity=0.334 Sum_probs=141.4
Q ss_pred cccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCeEEEEcC-CCCC-CCCCHHHHhccCCcC--
Q 000720 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQ-SSWI-QTGTIRENILFGKDM-- 685 (1333)
Q Consensus 611 ~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~iayv~Q-~~~i-~~~Tv~enI~~g~~~-- 685 (1333)
.+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|+..+..+ ...+ ++.|++||+.++...
T Consensus 35 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i-~~~g~~~~~~~~~~~~~~~~tv~enl~~~~~~~~ 113 (224)
T cd03220 35 FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTV-TVRGRVSSLLGLGGGFNPELTGRENIYLNGRLLG 113 (224)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEEchhhcccccCCCCCcHHHHHHHHHHHcC
Confidence 468999 99999999999999999999999999999999999996 88887655443 2333 467999999875321
Q ss_pred -CHHH----HHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHH
Q 000720 686 -RQSF----YEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLF 760 (1333)
Q Consensus 686 -~~~~----~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~ 760 (1333)
+... ..++++..++ ....++...+||||||||++||||++++|+++||||||++||+.+++.+.
T Consensus 114 ~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~ 182 (224)
T cd03220 114 LSRKEIDEKIDEIIEFSEL-----------GDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQ 182 (224)
T ss_pred CCHHHHHHHHHHHHHHcCC-----------hhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 1111 1222222222 12234567899999999999999999999999999999999999988887
Q ss_pred HHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeEEEcc
Q 000720 761 KQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSG 801 (1333)
Q Consensus 761 ~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g 801 (1333)
+.+.+...+++|+|++||+++.+. .||++++|++|++++.|
T Consensus 183 ~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 183 RRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 754443345789999999999886 49999999999998765
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-31 Score=291.44 Aligned_cols=171 Identities=26% Similarity=0.298 Sum_probs=143.3
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCC--CcCCCCcEEEECC--------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGE--IPRISGAAIKVHG-------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~--~~~~~G~~i~~~g-------- 659 (1333)
++++|++++|+. .+.+++ ||++++||+++|+|+||||||||+++|+|+ .+|++|++ .++|
T Consensus 1 l~~~~l~~~~~~--------~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i-~~~g~~~~~~~~ 71 (200)
T cd03217 1 LEIKDLHVSVGG--------KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEI-LFKGEDITDLPP 71 (200)
T ss_pred CeEEEEEEEeCC--------EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEE-EECCEECCcCCH
Confidence 468899999963 358999 999999999999999999999999999999 47899986 5544
Q ss_pred ------eEEEEcCCCCCCC-CCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHH
Q 000720 660 ------KKAYVPQSSWIQT-GTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732 (1333)
Q Consensus 660 ------~iayv~Q~~~i~~-~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LA 732 (1333)
.++|++|++.+++ .|+++|+ . ....+||||||||++||
T Consensus 72 ~~~~~~~i~~v~q~~~~~~~~~~~~~l------------------------~-----------~~~~~LS~G~~qrv~la 116 (200)
T cd03217 72 EERARLGIFLAFQYPPEIPGVKNADFL------------------------R-----------YVNEGFSGGEKKRNEIL 116 (200)
T ss_pred HHHhhCcEEEeecChhhccCccHHHHH------------------------h-----------hccccCCHHHHHHHHHH
Confidence 2899999987665 4666655 0 11247999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh--cCCEEEEEeCCeEEEccChHHH
Q 000720 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD--AADLVLVMKDGKIEQSGKYEDL 806 (1333)
Q Consensus 733 RAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~--~aD~i~vl~~G~i~~~g~~~~l 806 (1333)
||++.+|++++|||||++||+.+.+.+.+.+.+...+++|+|++||+++.+. .||++++|++|++.+.|+ .++
T Consensus 117 ral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~~-~~~ 191 (200)
T cd03217 117 QLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGD-KEL 191 (200)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEcc-HHH
Confidence 9999999999999999999999988877654443345789999999999987 699999999999999884 444
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-31 Score=300.27 Aligned_cols=183 Identities=20% Similarity=0.306 Sum_probs=143.2
Q ss_pred cccC-CeEe-----eCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC-eEEEEcCCCC-CCCCCHHHHhccCCc
Q 000720 613 KLTD-KMKI-----MKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-KKAYVPQSSW-IQTGTIRENILFGKD 684 (1333)
Q Consensus 613 ~L~~-nl~i-----~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g-~iayv~Q~~~-i~~~Tv~enI~~g~~ 684 (1333)
.+.+ +|++ ++||+++|+||||||||||+++|+|+++|++|++ .++| +++|++|++. .++.|++||+.+...
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i-~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~ 87 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDI-EIELDTVSYKPQYIKADYEGTVRDLLSSITK 87 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeE-EECCceEEEecccccCCCCCCHHHHHHHHhh
Confidence 4555 5555 4799999999999999999999999999999996 7887 8999999986 467899999975422
Q ss_pred C---CHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH
Q 000720 685 M---RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (1333)
Q Consensus 685 ~---~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~ 761 (1333)
. ...+.+++++.+++.. ..+.++.+||||||||++|||||+.+|++|||||||++||+.++..+.+
T Consensus 88 ~~~~~~~~~~~~l~~l~l~~-----------~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~ 156 (246)
T cd03237 88 DFYTHPYFKTEIAKPLQIEQ-----------ILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASK 156 (246)
T ss_pred hccccHHHHHHHHHHcCCHH-----------HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 1 1222344455444432 2345678999999999999999999999999999999999999887766
Q ss_pred HHHHHHh-CCCeEEEecCchhhhhc-CCEEEEEeCCeEE--EccChHHHH
Q 000720 762 QCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE--QSGKYEDLI 807 (1333)
Q Consensus 762 ~~~~~~~-~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~--~~g~~~~l~ 807 (1333)
.+.+... .++|+|+|||+++.+.. ||+|++|+++..+ ..++++++.
T Consensus 157 ~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 206 (246)
T cd03237 157 VIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLR 206 (246)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHH
Confidence 4433333 37999999999999875 9999999765443 455666554
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-31 Score=297.52 Aligned_cols=178 Identities=29% Similarity=0.455 Sum_probs=143.8
Q ss_pred eEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--------eEEEEcCCCCC---CCCCHHHHhccCCc--
Q 000720 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------KKAYVPQSSWI---QTGTIRENILFGKD-- 684 (1333)
Q Consensus 618 l~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------~iayv~Q~~~i---~~~Tv~enI~~g~~-- 684 (1333)
|++++||+++|+|+||||||||+++|+|..+|++|++ .++| +++|++|++.+ ++.|++||+.++..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~ 79 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTV-KVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGH 79 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccc
Confidence 4689999999999999999999999999999999986 7766 38999999854 35799999987531
Q ss_pred ---C--C-HH---HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHH
Q 000720 685 ---M--R-QS---FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHT 755 (1333)
Q Consensus 685 ---~--~-~~---~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~ 755 (1333)
. . .. +..+.++.+++. ...+..+.+||||||||++||||++++|+++||||||++||+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~ 148 (223)
T TIGR03771 80 IGWLRRPCVADFAAVRDALRRVGLT-----------ELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPT 148 (223)
T ss_pred cccccCCcHHHHHHHHHHHHHhCCc-----------hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 0 1 11 122223333322 22345678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeEEEccChHHHHh
Q 000720 756 GTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 756 ~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
.+.+.+.+.+...+++|+|++||+++.+. .||+++++ +|++++.|+++++.+
T Consensus 149 ~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~ 201 (223)
T TIGR03771 149 QELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQD 201 (223)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcC
Confidence 88887755443345889999999999876 49999999 899999999988865
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2e-31 Score=300.16 Aligned_cols=183 Identities=26% Similarity=0.411 Sum_probs=147.3
Q ss_pred cccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC-------------eEEEEcCCCC-CCCCCHHH
Q 000720 613 KLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------------KKAYVPQSSW-IQTGTIRE 677 (1333)
Q Consensus 613 ~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g-------------~iayv~Q~~~-i~~~Tv~e 677 (1333)
.|++ ||++++||+++|+||||||||||+++|+|..++ +|++ .++| .++|++|++. .+..|++|
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i-~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 88 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSI-QFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQ 88 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEE-EECCEecCcCCHHHHhhheEEecccCccCCCccHHH
Confidence 5888 999999999999999999999999999999864 8876 6654 2799999974 56789999
Q ss_pred HhccCCcC--CH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHcc-------CCCEEEE
Q 000720 678 NILFGKDM--RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS-------NSDVYIF 744 (1333)
Q Consensus 678 nI~~g~~~--~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~-------~~~illL 744 (1333)
|+.++... +. ++.++.++..++. ...+..+.+||||||||++||||+++ +|+++||
T Consensus 89 nl~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llll 157 (248)
T PRK03695 89 YLTLHQPDKTRTEAVASALNEVAEALGLD-----------DKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLL 157 (248)
T ss_pred HHHhcCccCCCcHHHHHHHHHHHHHcCCH-----------hHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEE
Confidence 99986432 11 1223344433332 12345778999999999999999998 6799999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeEEEccChHHHHh
Q 000720 745 DDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 745 DEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
||||++||+...+.+.+.+.+...+++|+|++||+++.+. .||++++|++|++++.|+.+++..
T Consensus 158 DEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 158 DEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 9999999999988777644333345799999999999875 599999999999999999888754
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2e-31 Score=293.68 Aligned_cols=186 Identities=22% Similarity=0.265 Sum_probs=149.0
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--------
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g-------- 659 (1333)
..++++|++++|+.. +.+++ ||++++||+++|+|+||||||||+++|+|+++|++|++ .++|
T Consensus 10 ~~l~~~~l~~~~~~~--------~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~i~~~~~ 80 (214)
T PRK13543 10 PLLAAHALAFSRNEE--------PVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQI-QIDGKTATRGDR 80 (214)
T ss_pred ceEEEeeEEEecCCc--------eeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeE-EECCEEccchhh
Confidence 469999999999642 57999 99999999999999999999999999999999999986 6665
Q ss_pred --eEEEEcCCCCCCC-CCHHHHhccCCcCC----HHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHH
Q 000720 660 --KKAYVPQSSWIQT-GTIRENILFGKDMR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732 (1333)
Q Consensus 660 --~iayv~Q~~~i~~-~Tv~enI~~g~~~~----~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LA 732 (1333)
.++|++|++.++. .|++||+.++...+ +++.++.++..++. ...+.+..+||||||||++||
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv~la 149 (214)
T PRK13543 81 SRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLA-----------GYEDTLVRQLSAGQKKRLALA 149 (214)
T ss_pred hhceEEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCCh-----------hhccCChhhCCHHHHHHHHHH
Confidence 3899999987665 49999997643221 11222223322221 123467789999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeC
Q 000720 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKD 794 (1333)
Q Consensus 733 RAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~ 794 (1333)
||++++|++++|||||++||+...+.+.+.+.+...+++|+|++||+++.+.. ||++++++.
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 150 RLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 99999999999999999999999887766443344567999999999999865 999999864
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.3e-31 Score=295.58 Aligned_cols=215 Identities=23% Similarity=0.346 Sum_probs=163.5
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcC-----CCCcEEEECC-----
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG----- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~-----~~G~~i~~~g----- 659 (1333)
++++|.+.++.... .....++| ||++++||++||+|++||||||+.++|+|++++ .+|++ .++|
T Consensus 2 L~v~nL~v~f~~~~----g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i-~f~g~~l~~ 76 (316)
T COG0444 2 LEVKNLSVSFPTDA----GVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEI-LFDGKDLLS 76 (316)
T ss_pred ceEeeeEEEEecCC----ccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEE-EECCccccc
Confidence 46888888886541 23467889 999999999999999999999999999999983 34554 4443
Q ss_pred ------------eEEEEcCCCC--C-CCCCHHHHhc----cCCcC--CH---HHHHHHHHHcccchHHHhhcCCCccccC
Q 000720 660 ------------KKAYVPQSSW--I-QTGTIRENIL----FGKDM--RQ---SFYEEVLEGCALNQDIEMWADGDLSVVG 715 (1333)
Q Consensus 660 ------------~iayv~Q~~~--i-~~~Tv~enI~----~g~~~--~~---~~~~~v~~~~~l~~d~~~~~~g~~t~ig 715 (1333)
+|+|++|+|- + +-.||.+-+. ..... .+ ++-.+.++..++.+. ...+.
T Consensus 77 l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~--------~~~~~ 148 (316)
T COG0444 77 LSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDP--------ERRLK 148 (316)
T ss_pred CCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCH--------HHHHh
Confidence 5799999984 2 3347765553 21111 11 122233333333321 12345
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhhc-CCEEEEEe
Q 000720 716 ERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMK 793 (1333)
Q Consensus 716 ~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~~-aD~i~vl~ 793 (1333)
..+.+|||||||||.||.|+..+|+++|.||||+|||..++.++.+.+.+... .|.|+|+||||+..+.. ||+|+||.
T Consensus 149 ~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMY 228 (316)
T COG0444 149 SYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMY 228 (316)
T ss_pred hCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEE
Confidence 67899999999999999999999999999999999999999999875433322 57899999999998754 99999999
Q ss_pred CCeEEEccChHHHHhhcchHHHHHH
Q 000720 794 DGKIEQSGKYEDLIADQNSELVRQM 818 (1333)
Q Consensus 794 ~G~i~~~g~~~~l~~~~~~~~~~~~ 818 (1333)
.|+|+|.|+.++++.++...+.+.+
T Consensus 229 aG~iVE~g~~~~i~~~P~HPYT~~L 253 (316)
T COG0444 229 AGRIVEEGPVEEIFKNPKHPYTRGL 253 (316)
T ss_pred CcEEEEeCCHHHHhcCCCChHHHHH
Confidence 9999999999999987766666544
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.1e-32 Score=270.72 Aligned_cols=204 Identities=26% Similarity=0.348 Sum_probs=162.7
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCe-------
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK------- 660 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~------- 660 (1333)
.+++++|....|... .+||+ +++.++|+.+.|+|.+||||||+|+||.=+..|..|.+ .++|.
T Consensus 5 ~~l~v~dlHK~~G~~--------eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I-~v~geei~~k~~ 75 (256)
T COG4598 5 NALEVEDLHKRYGEH--------EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSI-RVNGEEIRLKRD 75 (256)
T ss_pred cceehhHHHhhcccc--------hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceE-EECCeEEEeeeC
Confidence 467788887777543 58999 99999999999999999999999999999999999986 66542
Q ss_pred -------------------EEEEcCCCCCC-CCCHHHHhccC------CcCCH--HHHHHHHHHcccchHHHhhcCCCcc
Q 000720 661 -------------------KAYVPQSSWIQ-TGTIRENILFG------KDMRQ--SFYEEVLEGCALNQDIEMWADGDLS 712 (1333)
Q Consensus 661 -------------------iayv~Q~~~i~-~~Tv~enI~~g------~~~~~--~~~~~v~~~~~l~~d~~~~~~g~~t 712 (1333)
.++|+|+-.+. .+||.||+.-. .+-++ ++-+..+...++. .
T Consensus 76 ~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~-----------e 144 (256)
T COG4598 76 KDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIA-----------E 144 (256)
T ss_pred CCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCch-----------h
Confidence 38999987654 47999999743 22111 1222223333332 2
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEE
Q 000720 713 VVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLV 791 (1333)
Q Consensus 713 ~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~v 791 (1333)
..+..+..|||||+||++|||||+.+|+++|+|||||||||+---++.+-+-....+|+|.++|||.+.|... +.+|+.
T Consensus 145 k~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~f 224 (256)
T COG4598 145 KADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIF 224 (256)
T ss_pred hhhcCccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEE
Confidence 2335788999999999999999999999999999999999998777776443445579999999999999977 899999
Q ss_pred EeCCeEEEccChHHHHhhcch
Q 000720 792 MKDGKIEQSGKYEDLIADQNS 812 (1333)
Q Consensus 792 l~~G~i~~~g~~~~l~~~~~~ 812 (1333)
+++|.|.++|+|+++..++..
T Consensus 225 Lh~G~iEE~G~P~qvf~nP~S 245 (256)
T COG4598 225 LHQGKIEEEGPPEQVFGNPQS 245 (256)
T ss_pred eecceecccCChHHHhcCCCC
Confidence 999999999999999875443
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-31 Score=332.70 Aligned_cols=207 Identities=23% Similarity=0.325 Sum_probs=160.9
Q ss_pred cEEEeeeEEEcCCcccc---cCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC------
Q 000720 590 AIDIEAGEYAWDAREEN---FKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------ 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~---~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g------ 659 (1333)
.++++|++++|+..... .....+.+++ ||++++||+++|+||||||||||+++|+|+++ .+|++ .++|
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i-~~~g~~i~~~ 352 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEI-WFDGQPLHNL 352 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEE-EECCEEcccc
Confidence 58999999999631000 0012468999 99999999999999999999999999999985 88986 5544
Q ss_pred ----------eEEEEcCCC--CC-CCCCHHHHhccCCc-----CCH----HHHHHHHHHcccchHHHhhcCCCccccCCC
Q 000720 660 ----------KKAYVPQSS--WI-QTGTIRENILFGKD-----MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGER 717 (1333)
Q Consensus 660 ----------~iayv~Q~~--~i-~~~Tv~enI~~g~~-----~~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~ 717 (1333)
+++|++|++ .+ .+.|++||+.++.. .+. ++.++.++..++.. .....+
T Consensus 353 ~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~ 422 (529)
T PRK15134 353 NRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDP----------ETRHRY 422 (529)
T ss_pred chhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCH----------HHHhcC
Confidence 379999997 24 45799999987521 111 11222333333321 123467
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhh-cCCEEEEEeCC
Q 000720 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLD-AADLVLVMKDG 795 (1333)
Q Consensus 718 g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~-~aD~i~vl~~G 795 (1333)
+.+|||||||||+||||++.+|+++||||||++||+.+.+.+++.+.+...+ ++|||+||||++++. .||+|++|++|
T Consensus 423 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G 502 (529)
T PRK15134 423 PAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQG 502 (529)
T ss_pred CccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECC
Confidence 7899999999999999999999999999999999999988887754443333 789999999999876 49999999999
Q ss_pred eEEEccChHHHHh
Q 000720 796 KIEQSGKYEDLIA 808 (1333)
Q Consensus 796 ~i~~~g~~~~l~~ 808 (1333)
++++.|+.+++.+
T Consensus 503 ~i~~~~~~~~~~~ 515 (529)
T PRK15134 503 EVVEQGDCERVFA 515 (529)
T ss_pred EEEEEcCHHHHhc
Confidence 9999999998875
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-32 Score=279.10 Aligned_cols=198 Identities=26% Similarity=0.408 Sum_probs=164.4
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCe---------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------- 660 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~--------- 660 (1333)
|+++|++.+|.. +.++.+ |++|++|.+++++||||+||||||+++.+++++++|++ .++|.
T Consensus 2 I~i~nv~K~y~~--------~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i-~i~g~~~~~~~s~~ 72 (252)
T COG4604 2 ITIENVSKSYGT--------KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEI-TIDGLELTSTPSKE 72 (252)
T ss_pred eeehhhhHhhCC--------EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceE-EEeeeecccCChHH
Confidence 678888888864 478999 99999999999999999999999999999999999996 78774
Q ss_pred ----EEEEcCCCCCC-CCCHHHHhccCC-cCCH--------HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHH
Q 000720 661 ----KAYVPQSSWIQ-TGTIRENILFGK-DMRQ--------SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1333)
Q Consensus 661 ----iayv~Q~~~i~-~~Tv~enI~~g~-~~~~--------~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQk 726 (1333)
++..-|+..+. +.||||-+.||+ ||.+ ...++.++...|. .+. ++...+||||||
T Consensus 73 LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~----~l~-------dryLd~LSGGQr 141 (252)
T COG4604 73 LAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLE----DLS-------DRYLDELSGGQR 141 (252)
T ss_pred HHHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhccc----chH-------HHhHHhcccchh
Confidence 46777887764 569999999997 4332 2233333333332 111 244568999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhh-cCCEEEEEeCCeEEEccChH
Q 000720 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYE 804 (1333)
Q Consensus 727 qRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~~~ 804 (1333)
||.-+|..+++|.|.++||||+++||.+.+..+++.+.+...+ |||+|+|-||++|+. ++|+|+.|++|+++.+|+++
T Consensus 142 QRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~ 221 (252)
T COG4604 142 QRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPD 221 (252)
T ss_pred hhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHH
Confidence 9999999999999999999999999999999998865554443 899999999999986 59999999999999999999
Q ss_pred HHHh
Q 000720 805 DLIA 808 (1333)
Q Consensus 805 ~l~~ 808 (1333)
|+.+
T Consensus 222 eii~ 225 (252)
T COG4604 222 EIIQ 225 (252)
T ss_pred HhcC
Confidence 9986
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-31 Score=290.84 Aligned_cols=182 Identities=24% Similarity=0.265 Sum_probs=147.2
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 2 l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v-~~~g~~~~~~~~~~ 72 (204)
T PRK13538 2 LEARNLACERDE--------RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEV-LWQGEPIRRQRDEY 72 (204)
T ss_pred eEEEEEEEEECC--------EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEEcccchHHh
Confidence 678999999863 357999 99999999999999999999999999999999999986 5554
Q ss_pred --eEEEEcCCCCCC-CCCHHHHhccCCcC----CHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHH
Q 000720 660 --KKAYVPQSSWIQ-TGTIRENILFGKDM----RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732 (1333)
Q Consensus 660 --~iayv~Q~~~i~-~~Tv~enI~~g~~~----~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LA 732 (1333)
+++|++|++.++ +.|++||+.++.+. ++++.+++++..++... .+.++.+||||||||++||
T Consensus 73 ~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qrl~la 141 (204)
T PRK13538 73 HQDLLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGF-----------EDVPVRQLSAGQQRRVALA 141 (204)
T ss_pred hhheEEeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHH-----------hhCChhhcCHHHHHHHHHH
Confidence 379999998765 47999999876432 22344455555555321 1346789999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEE
Q 000720 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVM 792 (1333)
Q Consensus 733 RAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl 792 (1333)
||++++|++++|||||++||+.+.+.+.+.+.+...+++|+|++||+++++.. .+|++++
T Consensus 142 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 142 RLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 99999999999999999999999888876443333457899999999999976 5677666
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-31 Score=298.04 Aligned_cols=196 Identities=20% Similarity=0.252 Sum_probs=148.0
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCC--cCCCCcEEEECC--------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEI--PRISGAAIKVHG-------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~--~~~~G~~i~~~g-------- 659 (1333)
++++|+++.|+. .+.+++ |+++++||+++|+||||||||||+++|+|+. +|++|++ .++|
T Consensus 2 i~~~nl~~~~~~--------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i-~~~g~~~~~~~~ 72 (248)
T PRK09580 2 LSIKDLHVSVED--------KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTV-EFKGKDLLELSP 72 (248)
T ss_pred eEEEEEEEEeCC--------eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEE-EECCCccccCCH
Confidence 689999999963 258999 9999999999999999999999999999995 6899986 5544
Q ss_pred ------eEEEEcCCCCCCC-CCHHHHhccCCc----------CCH----HHHHHHHHHcccchHHHhhcCCCccccCCCC
Q 000720 660 ------KKAYVPQSSWIQT-GTIRENILFGKD----------MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1333)
Q Consensus 660 ------~iayv~Q~~~i~~-~Tv~enI~~g~~----------~~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g 718 (1333)
.++|++|++.++. .|..+++.+... .+. ++.++.++..+ ++.+.. ...+
T Consensus 73 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~---~~~~ 142 (248)
T PRK09580 73 EDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLK-------MPEDLL---TRSV 142 (248)
T ss_pred HHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcC-------CChhhc---ccCC
Confidence 3899999986543 355555432110 000 00111111111 111111 1233
Q ss_pred C-CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEecCchhhhhc--CCEEEEEeC
Q 000720 719 I-NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDA--ADLVLVMKD 794 (1333)
Q Consensus 719 ~-~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~-~~~~TvIlvtH~~~~l~~--aD~i~vl~~ 794 (1333)
. +||||||||++||||++++|+++||||||++||+.+.+.+.+. ++.+ .+++|||++|||++++.. +|+|++|++
T Consensus 143 ~~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~-l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~ 221 (248)
T PRK09580 143 NVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADG-VNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQ 221 (248)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHH-HHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEEC
Confidence 3 7999999999999999999999999999999999998877664 4444 347899999999999875 899999999
Q ss_pred CeEEEccChHHH
Q 000720 795 GKIEQSGKYEDL 806 (1333)
Q Consensus 795 G~i~~~g~~~~l 806 (1333)
|++++.|+++..
T Consensus 222 g~i~~~g~~~~~ 233 (248)
T PRK09580 222 GRIVKSGDFTLV 233 (248)
T ss_pred CeEEEeCCHHHH
Confidence 999999988754
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-31 Score=332.70 Aligned_cols=201 Identities=20% Similarity=0.315 Sum_probs=159.2
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCc-CCCCcEEEECC--------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-RISGAAIKVHG-------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~-~~~G~~i~~~g-------- 659 (1333)
.++++|+++.|+.+ ...+++++ ||++++||+++|+||||||||||+++|+|+.+ |++|++ .++|
T Consensus 259 ~l~~~~l~~~~~~~-----~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i-~~~g~~~~~~~~ 332 (506)
T PRK13549 259 ILEVRNLTAWDPVN-----PHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEI-FIDGKPVKIRNP 332 (506)
T ss_pred eEEEecCccccccc-----cccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEE-EECCEECCCCCH
Confidence 58999999988532 12458999 99999999999999999999999999999998 589986 5544
Q ss_pred ------eEEEEcCCC---CC-CCCCHHHHhccCCc--C------CH----HHHHHHHHHcccchHHHhhcCCCccccCCC
Q 000720 660 ------KKAYVPQSS---WI-QTGTIRENILFGKD--M------RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGER 717 (1333)
Q Consensus 660 ------~iayv~Q~~---~i-~~~Tv~enI~~g~~--~------~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~ 717 (1333)
.++|++|++ .+ .+.|+.||+.++.. + +. ++.++.++.+++. ....+++
T Consensus 333 ~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~ 402 (506)
T PRK13549 333 QQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVK----------TASPELA 402 (506)
T ss_pred HHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCcc----------CCCcccc
Confidence 279999996 34 45799999987531 1 11 1112222222221 0123567
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCe
Q 000720 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGK 796 (1333)
Q Consensus 718 g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~ 796 (1333)
+.+||||||||++||||++.+|+++||||||++||+.+.+.+++.+.....+|+|||++|||++++.. ||++++|++|+
T Consensus 403 ~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~ 482 (506)
T PRK13549 403 IARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGK 482 (506)
T ss_pred cccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 88999999999999999999999999999999999999888876544433468999999999999865 99999999999
Q ss_pred EEEccChHHH
Q 000720 797 IEQSGKYEDL 806 (1333)
Q Consensus 797 i~~~g~~~~l 806 (1333)
++..|+.+++
T Consensus 483 i~~~~~~~~~ 492 (506)
T PRK13549 483 LKGDLINHNL 492 (506)
T ss_pred EEEEeccccC
Confidence 9999988776
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-30 Score=323.73 Aligned_cols=197 Identities=23% Similarity=0.335 Sum_probs=157.8
Q ss_pred CcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCC---CCcEEEECCe----------EEEEcCCCCCC-CCC
Q 000720 610 PTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI---SGAAIKVHGK----------KAYVPQSSWIQ-TGT 674 (1333)
Q Consensus 610 ~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~---~G~~i~~~g~----------iayv~Q~~~i~-~~T 674 (1333)
++++|+| |+++++||+++|+|||||||||||++|+|+.++. +|++ .++|. +|||+|+++++ +.|
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i-~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSV-LLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEE-EECCEECCHHHHhhhceeeccccccCccCc
Confidence 5678999 9999999999999999999999999999998874 6775 77764 59999999876 569
Q ss_pred HHHHhccCCcCCH----HHHHHHHHHcccchHHHhhcCCCccccCCC--CCCCChHHHHHHHHHHHHccCCCEEEEeCCC
Q 000720 675 IRENILFGKDMRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGER--GINLSGGQKQRIQLARAVYSNSDVYIFDDPF 748 (1333)
Q Consensus 675 v~enI~~g~~~~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~--g~~LSGGQkqRv~LARAl~~~~~illLDEP~ 748 (1333)
|+||+.|+...+. .+.++..+.+.+.+++. +.+..+|.+|+. +..||||||||++||||++.+|++++|||||
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPt 194 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALG-LRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPT 194 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcC-chhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCC
Confidence 9999998653321 01111111111111111 233456888874 5789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCeEEEecCchh-h-hhcCCEEEEEeCCeEEEccChHHHHh
Q 000720 749 SAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLE-F-LDAADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 749 saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~-~-l~~aD~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
+|||++++.++.+.+.+...+|+|+|+++|+++ . .+.+|++++|++|++++.|+++++.+
T Consensus 195 sgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~ 256 (617)
T TIGR00955 195 SGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVP 256 (617)
T ss_pred cchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHH
Confidence 999999999998876655556899999999995 4 46799999999999999999998854
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-31 Score=288.50 Aligned_cols=182 Identities=26% Similarity=0.326 Sum_probs=147.2
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|+++.|+. ...+++ |++|++||+++|+|+||||||||+++|+|+.+|.+|++ .++|
T Consensus 1 l~i~~l~~~~~~--------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 71 (201)
T cd03231 1 LEADELTCERDG--------RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRV-LLNGGPLDFQRDSI 71 (201)
T ss_pred CEEEEEEEEeCC--------ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEecccccHHh
Confidence 468899999864 357999 99999999999999999999999999999999999986 5543
Q ss_pred --eEEEEcCCCCCC-CCCHHHHhccCCcC-CHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHH
Q 000720 660 --KKAYVPQSSWIQ-TGTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (1333)
Q Consensus 660 --~iayv~Q~~~i~-~~Tv~enI~~g~~~-~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl 735 (1333)
+++|++|++.++ +.|++||+.+.... ..++.++.++..++... ....+.+||||||||++||||+
T Consensus 72 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~laral 140 (201)
T cd03231 72 ARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGF-----------EDRPVAQLSAGQQRRVALARLL 140 (201)
T ss_pred hhheEEeccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhh-----------hcCchhhCCHHHHHHHHHHHHH
Confidence 479999998664 68999999876432 33445555555554321 1245789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhh-hcCCEEEEE
Q 000720 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFL-DAADLVLVM 792 (1333)
Q Consensus 736 ~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l-~~aD~i~vl 792 (1333)
+++|+++||||||++||+...+.+.+.+.+...+++|+|++||+...+ ..+|+++++
T Consensus 141 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 141 LSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 999999999999999999998887764433334589999999998765 558999876
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-31 Score=288.83 Aligned_cols=181 Identities=24% Similarity=0.288 Sum_probs=145.5
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++++|+. .+.+++ |+++++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 2 l~~~~l~~~~~~--------~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v-~~~g~~~~~~~~~~ 72 (200)
T PRK13540 2 LDVIELDFDYHD--------QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEI-LFERQSIKKDLCTY 72 (200)
T ss_pred EEEEEEEEEeCC--------eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeE-EECCCccccCHHHH
Confidence 678999999963 358999 99999999999999999999999999999999999986 5554
Q ss_pred --eEEEEcCCCCCC-CCCHHHHhccCCcC--CHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHH
Q 000720 660 --KKAYVPQSSWIQ-TGTIRENILFGKDM--RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734 (1333)
Q Consensus 660 --~iayv~Q~~~i~-~~Tv~enI~~g~~~--~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARA 734 (1333)
+++|++|++.++ ..|++||+.++... ++....+.++..++. ...+.+..+||||||||++||||
T Consensus 73 ~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~~rv~lara 141 (200)
T PRK13540 73 QKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLE-----------HLIDYPCGLLSSGQKRQVALLRL 141 (200)
T ss_pred HhheEEeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCc-----------hhhhCChhhcCHHHHHHHHHHHH
Confidence 479999998764 68999999986321 122223333333221 12235567899999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEE
Q 000720 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLV 791 (1333)
Q Consensus 735 l~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~v 791 (1333)
++++|+++||||||++||+.+.+.+.+.+.+...++.|+|++||+.+.+..||.-++
T Consensus 142 l~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 142 WMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred HhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 999999999999999999999887776544433468999999999999999987654
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-31 Score=285.49 Aligned_cols=176 Identities=30% Similarity=0.450 Sum_probs=134.9
Q ss_pred EEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCeEEEEcCCCCC
Q 000720 592 DIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWI 670 (1333)
Q Consensus 592 ~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~iayv~Q~~~i 670 (1333)
+++|++++|+. .+.+++ |+++++||+++|+||||||||||+++|+|+.+|++|++ .++|.-- .+ .
T Consensus 1 ~~~~l~~~~~~--------~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v-~~~g~~~--~~---~ 66 (180)
T cd03214 1 EVENLSVGYGG--------RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEI-LLDGKDL--AS---L 66 (180)
T ss_pred CeeEEEEEECC--------eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEEC--Cc---C
Confidence 46889999863 358999 99999999999999999999999999999999999986 7766311 00 0
Q ss_pred CCCCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCC
Q 000720 671 QTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSA 750 (1333)
Q Consensus 671 ~~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~sa 750 (1333)
.....+..+.+-. ++++.+++.+. ...++.+||||||||++||||++.+|+++||||||++
T Consensus 67 ~~~~~~~~i~~~~--------q~l~~~gl~~~-----------~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~ 127 (180)
T cd03214 67 SPKELARKIAYVP--------QALELLGLAHL-----------ADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSH 127 (180)
T ss_pred CHHHHHHHHhHHH--------HHHHHcCCHhH-----------hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccC
Confidence 0001122221110 14444444322 2246789999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHh-C-CCeEEEecCchhhhh-cCCEEEEEeCCeEEEcc
Q 000720 751 VDAHTGTHLFKQCLMGLL-S-QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSG 801 (1333)
Q Consensus 751 LD~~~~~~l~~~~~~~~~-~-~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g 801 (1333)
||+.+.+.+.+. ++... + ++|+|++||+++++. .||++++|++|++++.|
T Consensus 128 LD~~~~~~~~~~-l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 128 LDIAHQIELLEL-LRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred CCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999998877664 44443 3 789999999999985 59999999999998653
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.3e-30 Score=343.54 Aligned_cols=203 Identities=19% Similarity=0.283 Sum_probs=167.2
Q ss_pred CccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC-------
Q 000720 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (1333)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g------- 659 (1333)
+..|+++|+++.|+.. ....+++ ||+|++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 1935 ~~~L~v~nLsK~Y~~~------~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I-~i~G~~i~~~~ 2007 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGT------SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDA-TVAGKSILTNI 2007 (2272)
T ss_pred CceEEEEEEEEEECCC------CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEE-EECCEECcchH
Confidence 4469999999999642 2468999 99999999999999999999999999999999999986 6655
Q ss_pred -----eEEEEcCCCCCC-CCCHHHHhccCCc---CCHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHH
Q 000720 660 -----KKAYVPQSSWIQ-TGTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1333)
Q Consensus 660 -----~iayv~Q~~~i~-~~Tv~enI~~g~~---~~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQk 726 (1333)
++|||||++.++ ..|++||+.+... ..++ ..+++++.+++.+ ..+++..+||||||
T Consensus 2008 ~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~-----------~~dk~~~~LSGGqK 2076 (2272)
T TIGR01257 2008 SDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSL-----------YADRLAGTYSGGNK 2076 (2272)
T ss_pred HHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHH-----------HhcCChhhCCHHHH
Confidence 379999997655 5799999976321 1111 1223344444422 23467789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChHH
Q 000720 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYED 805 (1333)
Q Consensus 727 qRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~~ 805 (1333)
||+++|||++.+|++++|||||+|||+..++.+++.+.+...+|+|||++||++++++. ||||++|++|+++..|++++
T Consensus 2077 qRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~ 2156 (2272)
T TIGR01257 2077 RKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQH 2156 (2272)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999888876544434568999999999999875 99999999999999999999
Q ss_pred HHh
Q 000720 806 LIA 808 (1333)
Q Consensus 806 l~~ 808 (1333)
+.+
T Consensus 2157 Lk~ 2159 (2272)
T TIGR01257 2157 LKS 2159 (2272)
T ss_pred HHH
Confidence 875
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-31 Score=263.11 Aligned_cols=199 Identities=26% Similarity=0.330 Sum_probs=158.2
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
+|.+++.+|.|... ..|.| +++.+.||.+.+.||+|+|||||++.+.=+.-|.+|+. .+.+
T Consensus 2 sirv~~in~~yg~~--------q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l-~ia~~~fd~s~~~ 72 (242)
T COG4161 2 SIQLNGINCFYGAH--------QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL-NIAGNHFDFSKTP 72 (242)
T ss_pred ceEEcccccccccc--------hheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeE-EecccccccccCc
Confidence 58899999999754 57888 99999999999999999999999999998888899986 4432
Q ss_pred ----------eEEEEcCCCCC-CCCCHHHHhccC------CcCCH--HHHHHHHHHcccchHHHhhcCCCccccCCCCCC
Q 000720 660 ----------KKAYVPQSSWI-QTGTIRENILFG------KDMRQ--SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1333)
Q Consensus 660 ----------~iayv~Q~~~i-~~~Tv~enI~~g------~~~~~--~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~ 720 (1333)
++|+|+|+-.+ +..||.||+.-. .+-++ .+-.+.++...|. + ..++-+-.
T Consensus 73 ~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~------~-----~adr~plh 141 (242)
T COG4161 73 SDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLK------P-----YADRYPLH 141 (242)
T ss_pred cHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccc------c-----ccccCcee
Confidence 47999998765 467999998632 11111 1112222222222 1 22356789
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEE
Q 000720 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1333)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~ 799 (1333)
|||||+|||+|||||+.+|+++|+||||+||||+...++.+.+.+....|.|-++|||.+++.+. |.+|+.|++|+|++
T Consensus 142 lsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive 221 (242)
T COG4161 142 LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVE 221 (242)
T ss_pred cccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEe
Confidence 99999999999999999999999999999999999888886433333458999999999999976 99999999999999
Q ss_pred ccChHHHHh
Q 000720 800 SGKYEDLIA 808 (1333)
Q Consensus 800 ~g~~~~l~~ 808 (1333)
.|+.+-+.+
T Consensus 222 ~g~a~~ft~ 230 (242)
T COG4161 222 QGDASCFTE 230 (242)
T ss_pred ecchhhccC
Confidence 999877655
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-31 Score=278.22 Aligned_cols=160 Identities=28% Similarity=0.405 Sum_probs=126.9
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCeEEEEcCCCC
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSW 669 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~iayv~Q~~~ 669 (1333)
++++|++++|+.. +++++ ||++++||+++|+||||||||||+++|+|+.+|++|++ .++|.- +.
T Consensus 1 l~~~~l~~~~~~~--------~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v-~~~g~~--~~---- 65 (163)
T cd03216 1 LELRGITKRFGGV--------KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEI-LVDGKE--VS---- 65 (163)
T ss_pred CEEEEEEEEECCe--------EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE-EECCEE--CC----
Confidence 4689999999642 58999 99999999999999999999999999999999999986 676631 00
Q ss_pred CCCCCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC
Q 000720 670 IQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFS 749 (1333)
Q Consensus 670 i~~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~s 749 (1333)
..+.++ .+. +..+. + .+||||||||++||||++++|++++|||||+
T Consensus 66 --~~~~~~-----------~~~---~~i~~--------------~----~qLS~G~~qrl~laral~~~p~illlDEP~~ 111 (163)
T cd03216 66 --FASPRD-----------ARR---AGIAM--------------V----YQLSVGERQMVEIARALARNARLLILDEPTA 111 (163)
T ss_pred --cCCHHH-----------HHh---cCeEE--------------E----EecCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 000000 000 00110 0 1199999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEE
Q 000720 750 AVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1333)
Q Consensus 750 aLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~ 799 (1333)
+||+.+.+++.+.+.+...+++|+|++||+++.+.. ||++++|++|++++
T Consensus 112 ~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 112 ALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 999999888876544333458899999999998765 99999999999875
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-31 Score=329.22 Aligned_cols=210 Identities=19% Similarity=0.323 Sum_probs=162.5
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEEC-C-------
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH-G------- 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~-g------- 659 (1333)
..++++|++++|+... ....+++++ ||++++||+++|+||||||||||+++|+|+.+|++|++ .++ |
T Consensus 278 ~~l~~~~l~~~~~~~~---~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i-~~~~g~~~~~~~ 353 (520)
T TIGR03269 278 PIIKVRNVSKRYISVD---RGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEV-NVRVGDEWVDMT 353 (520)
T ss_pred ceEEEeccEEEeccCC---CCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE-EEecCCcccccc
Confidence 3599999999996310 012468999 99999999999999999999999999999999999986 552 1
Q ss_pred ------------eEEEEcCCCCCC-CCCHHHHhccCCc--CCHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCC
Q 000720 660 ------------KKAYVPQSSWIQ-TGTIRENILFGKD--MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1333)
Q Consensus 660 ------------~iayv~Q~~~i~-~~Tv~enI~~g~~--~~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~ 720 (1333)
+++|++|++.++ ..|++||+.++.. .... +..+.++.+++... ......+.++.+
T Consensus 354 ~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~~~~~~ 427 (520)
T TIGR03269 354 KPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEE------KAEEILDKYPDE 427 (520)
T ss_pred ccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCc------cchhhhhCChhh
Confidence 379999998655 4699999976321 1111 12223333333210 000123567889
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhhc-CCEEEEEeCCeEE
Q 000720 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDA-ADLVLVMKDGKIE 798 (1333)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~ 798 (1333)
||||||||++||||++.+|+++||||||++||+...+.+.+.+.+...+ ++|||++|||++++.. ||++++|++|+++
T Consensus 428 LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~ 507 (520)
T TIGR03269 428 LSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIV 507 (520)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999988887654443333 7899999999999864 9999999999999
Q ss_pred EccChHHHHh
Q 000720 799 QSGKYEDLIA 808 (1333)
Q Consensus 799 ~~g~~~~l~~ 808 (1333)
+.|+++++.+
T Consensus 508 ~~g~~~~~~~ 517 (520)
T TIGR03269 508 KIGDPEEIVE 517 (520)
T ss_pred EECCHHHHHh
Confidence 9999887754
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.6e-31 Score=287.11 Aligned_cols=183 Identities=25% Similarity=0.295 Sum_probs=148.1
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|+++.|+. ...+++ ||+|++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 3 l~~~~l~~~~~~--------~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 73 (207)
T PRK13539 3 LEGEDLACVRGG--------RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTI-KLDGGDIDDPDVAE 73 (207)
T ss_pred EEEEeEEEEECC--------eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEeCcchhhHh
Confidence 789999999863 257999 99999999999999999999999999999999999986 6665
Q ss_pred eEEEEcCCCCC-CCCCHHHHhccCCcC---CHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHH
Q 000720 660 KKAYVPQSSWI-QTGTIRENILFGKDM---RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (1333)
Q Consensus 660 ~iayv~Q~~~i-~~~Tv~enI~~g~~~---~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl 735 (1333)
.++|++|++.+ +..|++||+.+.... ++++..+.++..++.+. ...+..+||||||||++||||+
T Consensus 74 ~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~la~al 142 (207)
T PRK13539 74 ACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPL-----------AHLPFGYLSAGQKRRVALARLL 142 (207)
T ss_pred hcEEecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHH-----------HcCChhhcCHHHHHHHHHHHHH
Confidence 36899987654 568999999764322 22333444554444321 1245678999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeC
Q 000720 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKD 794 (1333)
Q Consensus 736 ~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~ 794 (1333)
+++|+++||||||++||+.+.+++.+.+.+...+++|+|++||++++++. |+++.++.
T Consensus 143 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 143 VSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 99999999999999999999888876544434568999999999999987 99988854
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.6e-31 Score=291.36 Aligned_cols=190 Identities=21% Similarity=0.263 Sum_probs=145.2
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEEC--C--------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH--G-------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~--g-------- 659 (1333)
++++|++++|+..... +...+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++ |
T Consensus 2 l~~~~l~~~~~~~~~~-~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~~~g~~~~~~~~ 79 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQG-GVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRI-LVRHEGAWVDLAQA 79 (224)
T ss_pred EEEEeeEEEeecccCC-CcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeE-EEecCCCccchhhc
Confidence 6789999999642000 012468999 99999999999999999999999999999999999986 553 2
Q ss_pred -----------eEEEEcCCCCCC-CCCHHHHhccCCc---CCHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCC
Q 000720 660 -----------KKAYVPQSSWIQ-TGTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1333)
Q Consensus 660 -----------~iayv~Q~~~i~-~~Tv~enI~~g~~---~~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~ 720 (1333)
+++|++|++.++ +.|++||+.+... .+.. +..+.++..++.++ ....++.+
T Consensus 80 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~ 149 (224)
T TIGR02324 80 SPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPER----------LWHLPPAT 149 (224)
T ss_pred CHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh----------hhhCCccc
Confidence 379999998765 5699999976321 1111 11222222222111 12356789
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEE
Q 000720 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVM 792 (1333)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl 792 (1333)
||||||||++||||++.+|++++|||||++||+++.+.+.+.+.+...+++|+|++||+.+++. .||+++.+
T Consensus 150 LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 150 FSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 9999999999999999999999999999999999988887654433345789999999999886 59999876
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-31 Score=264.95 Aligned_cols=177 Identities=25% Similarity=0.363 Sum_probs=148.6
Q ss_pred CcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC-------------eEEEEcCCCCCCCCCH
Q 000720 610 PTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------------KKAYVPQSSWIQTGTI 675 (1333)
Q Consensus 610 ~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g-------------~iayv~Q~~~i~~~Tv 675 (1333)
..++|++ ||.+.+||..+|+||+|||||||+++++-+.+|++|.+ ...| +++||.|.|-+|.+||
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l-~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tV 93 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTL-LFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTV 93 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceE-EEcCccccccChHHHHHHHHHHHcCccccccch
Confidence 4678999 99999999999999999999999999999999999986 6666 3699999999999999
Q ss_pred HHHhccCCc-----CCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCC
Q 000720 676 RENILFGKD-----MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSA 750 (1333)
Q Consensus 676 ~enI~~g~~-----~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~sa 750 (1333)
.||+.|.-. .|.......++..++ +.+.+.++..+||||+|||++|+|-|---|+|+||||||||
T Consensus 94 eDNlifP~~~r~rr~dr~aa~~llar~~l----------~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsA 163 (223)
T COG4619 94 EDNLIFPWQIRNRRPDRAAALDLLARFAL----------PDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSA 163 (223)
T ss_pred hhccccchHHhccCCChHHHHHHHHHcCC----------chhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhh
Confidence 999999643 333333333332222 33556678899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHH-hCCCeEEEecCchhh-hhcCCEEEEEeCCeE
Q 000720 751 VDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEF-LDAADLVLVMKDGKI 797 (1333)
Q Consensus 751 LD~~~~~~l~~~~~~~~-~~~~TvIlvtH~~~~-l~~aD~i~vl~~G~i 797 (1333)
||++.++.+-+.+.+.. .++..++-||||.+. +.+||+++-+..|++
T Consensus 164 LD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 164 LDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHA 212 (223)
T ss_pred cChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcc
Confidence 99999888765544544 356899999999987 788999999999876
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-30 Score=324.42 Aligned_cols=198 Identities=22% Similarity=0.349 Sum_probs=161.7
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--eEEEEc
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVP 665 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--~iayv~ 665 (1333)
..++++|++++|+.. +++++ ||++++||+++|+||||||||||+++|+|+++|++|++ .+++ ++||++
T Consensus 318 ~~l~~~~l~~~~~~~--------~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i-~~~~~~~i~~~~ 388 (530)
T PRK15064 318 NALEVENLTKGFDNG--------PLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTV-KWSENANIGYYA 388 (530)
T ss_pred ceEEEEeeEEeeCCc--------eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE-EECCceEEEEEc
Confidence 469999999999642 57999 99999999999999999999999999999999999986 6765 689999
Q ss_pred CCCC--CC-CCCHHHHhccCC--cCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCC
Q 000720 666 QSSW--IQ-TGTIRENILFGK--DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSD 740 (1333)
Q Consensus 666 Q~~~--i~-~~Tv~enI~~g~--~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ 740 (1333)
|++. ++ ..|++||+.+.. ..++++.++.++..++..+ ..+.++.+||||||||++||||++.+|+
T Consensus 389 q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGq~qrv~la~al~~~p~ 458 (530)
T PRK15064 389 QDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQD----------DIKKSVKVLSGGEKGRMLFGKLMMQKPN 458 (530)
T ss_pred ccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChh----------HhcCcccccCHHHHHHHHHHHHHhcCCC
Confidence 9974 33 469999986421 1122333444544444211 2346788999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEE-EccChHHHHh
Q 000720 741 VYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE-QSGKYEDLIA 808 (1333)
Q Consensus 741 illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~-~~g~~~~l~~ 808 (1333)
++||||||++||+.+.+.+.+. ++.. +.|||+||||++++.. ||++++|++|+++ ..|+++++.+
T Consensus 459 lllLDEPt~~LD~~~~~~l~~~-l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~ 525 (530)
T PRK15064 459 VLVMDEPTNHMDMESIESLNMA-LEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLR 525 (530)
T ss_pred EEEEcCCCCCCCHHHHHHHHHH-HHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHH
Confidence 9999999999999998877764 4433 4699999999999865 9999999999998 8899988765
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-31 Score=283.32 Aligned_cols=179 Identities=26% Similarity=0.453 Sum_probs=151.1
Q ss_pred CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC-----------------eEEEEcCCCCCC-CCCHHHH
Q 000720 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-----------------KKAYVPQSSWIQ-TGTIREN 678 (1333)
Q Consensus 617 nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g-----------------~iayv~Q~~~i~-~~Tv~en 678 (1333)
|++.+.-.++||.|++|||||||+++|.|+.+|++|.+ .++| ++|||+|+.-+| ..||+.|
T Consensus 18 ~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I-~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgN 96 (352)
T COG4148 18 NFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRI-ELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGN 96 (352)
T ss_pred eccCCCCceEEEecCCCCChhhHHHHHhccCCccccEE-EECCEEeecccCCcccChhhheeeeEeeccccccceEEecc
Confidence 67777768999999999999999999999999999986 6665 479999999876 5799999
Q ss_pred hccCCcCC-HHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHH
Q 000720 679 ILFGKDMR-QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGT 757 (1333)
Q Consensus 679 I~~g~~~~-~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~ 757 (1333)
+.||.... ...++++++..++.+ ..++.+.+||||+||||+|+|||..+|+++|+|||+|+||....+
T Consensus 97 L~YG~~~~~~~~fd~iv~lLGI~h-----------LL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~ 165 (352)
T COG4148 97 LRYGMWKSMRAQFDQLVALLGIEH-----------LLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKR 165 (352)
T ss_pred hhhhhcccchHhHHHHHHHhCcHH-----------HHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhh
Confidence 99997654 445666665555443 334677899999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHhC--CCeEEEecCchhhhh-cCCEEEEEeCCeEEEccChHHHHh
Q 000720 758 HLFKQCLMGLLS--QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 758 ~l~~~~~~~~~~--~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
+++-- ++.+.+ +..|++|||.++++. -||+|++|++|++...|..+++..
T Consensus 166 Eilpy-lERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~ 218 (352)
T COG4148 166 EILPY-LERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWG 218 (352)
T ss_pred HHHHH-HHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhc
Confidence 87753 343333 568999999998865 599999999999999999999986
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-30 Score=297.87 Aligned_cols=204 Identities=20% Similarity=0.358 Sum_probs=140.0
Q ss_pred CccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCeEEEEcC
Q 000720 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQ 666 (1333)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~iayv~Q 666 (1333)
...|.++|.++++.. ...++| .|++.+|+.++|+|+|||||||+|++|.|-..|..-.+ . +....+
T Consensus 73 s~dvk~~sls~s~~g--------~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~-d----~y~ls~ 139 (614)
T KOG0927|consen 73 SRDVKIESLSLSFHG--------VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHI-D----FYLLSR 139 (614)
T ss_pred cccceeeeeeeccCC--------ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCccc-c----hhhhcc
Confidence 346999999998864 467889 99999999999999999999999999999888765543 1 222333
Q ss_pred CCCCCC-CCHHHHhccCCcCCHHHHHH----HHHHccc----------------chH-----HH-hhc-CC-CccccCCC
Q 000720 667 SSWIQT-GTIRENILFGKDMRQSFYEE----VLEGCAL----------------NQD-----IE-MWA-DG-DLSVVGER 717 (1333)
Q Consensus 667 ~~~i~~-~Tv~enI~~g~~~~~~~~~~----v~~~~~l----------------~~d-----~~-~~~-~g-~~t~ig~~ 717 (1333)
+ ..++ .+.-+.+.+...-...+++. ...+|.- +.| +. .+. .| ......+.
T Consensus 140 e-~~ps~~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~ 218 (614)
T KOG0927|consen 140 E-IEPSEKQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKK 218 (614)
T ss_pred c-CCCchHHHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHH
Confidence 3 1222 23333332111111111111 1111111 000 00 000 01 11233467
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC-eEEEecCchhhhhc-CCEEEEEeCC
Q 000720 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK-TVLYTTHQLEFLDA-ADLVLVMKDG 795 (1333)
Q Consensus 718 g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~-TvIlvtH~~~~l~~-aD~i~vl~~G 795 (1333)
..+||||||.|++|||||..+|+++||||||++||..+...+-+ .+.. .++ ++|+++|.-++++. |.+|+.|+++
T Consensus 219 ~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee-~L~k--~d~~~lVi~sh~QDfln~vCT~Ii~l~~k 295 (614)
T KOG0927|consen 219 VKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEE-YLAK--YDRIILVIVSHSQDFLNGVCTNIIHLDNK 295 (614)
T ss_pred hhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHH-HHHh--ccCceEEEEecchhhhhhHhhhhheeccc
Confidence 78999999999999999999999999999999999988766543 2222 234 89999999999987 9999999999
Q ss_pred e-EEEccChHHHHh
Q 000720 796 K-IEQSGKYEDLIA 808 (1333)
Q Consensus 796 ~-i~~~g~~~~l~~ 808 (1333)
+ +.+.|+|+++..
T Consensus 296 kl~~y~Gnydqy~~ 309 (614)
T KOG0927|consen 296 KLIYYEGNYDQYVK 309 (614)
T ss_pred ceeeecCCHHHHhh
Confidence 9 779999998875
|
|
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=283.71 Aligned_cols=178 Identities=20% Similarity=0.291 Sum_probs=143.3
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------e
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------K 660 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------~ 660 (1333)
++++|++++|+.. .+.+ ||++++||+++|+|+||||||||+++|+|+.+|++|++ .++| .
T Consensus 2 l~~~~l~~~~~~~---------~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~i~~~~~~~ 71 (195)
T PRK13541 2 LSLHQLQFNIEQK---------NLFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNI-YYKNCNINNIAKPY 71 (195)
T ss_pred eEEEEeeEEECCc---------EEEEEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEE-EECCcccChhhhhh
Confidence 6789999999532 3456 99999999999999999999999999999999999986 6666 2
Q ss_pred EEEEcCCCC-CCCCCHHHHhccCCcC--CHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHcc
Q 000720 661 KAYVPQSSW-IQTGTIRENILFGKDM--RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS 737 (1333)
Q Consensus 661 iayv~Q~~~-i~~~Tv~enI~~g~~~--~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~ 737 (1333)
++|++|++. .++.|++||+.++... ..++.++.++.+++.+ ..++++.+||||||||++||||+++
T Consensus 72 ~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~~rl~la~al~~ 140 (195)
T PRK13541 72 CTYIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHD-----------LLDEKCYSLSSGMQKIVAIARLIAC 140 (195)
T ss_pred EEeccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHh-----------hhccChhhCCHHHHHHHHHHHHHhc
Confidence 789999875 4678999999875432 1223344444444322 2345678999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEE
Q 000720 738 NSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLV 789 (1333)
Q Consensus 738 ~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i 789 (1333)
+|++++|||||++||+.+.+.+.+.+.....+++|+|++||+++.++.||.+
T Consensus 141 ~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~ 192 (195)
T PRK13541 141 QSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQIL 192 (195)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhhee
Confidence 9999999999999999997777664433334679999999999999998876
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-30 Score=305.01 Aligned_cols=172 Identities=29% Similarity=0.383 Sum_probs=139.1
Q ss_pred EECCCCCChhHHHHHHhCCCcCCCCcEEEECC-----------eEEEEcCCCCCCC-CCHHHHhccCCcC---CH----H
Q 000720 628 VCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-----------KKAYVPQSSWIQT-GTIRENILFGKDM---RQ----S 688 (1333)
Q Consensus 628 ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g-----------~iayv~Q~~~i~~-~Tv~enI~~g~~~---~~----~ 688 (1333)
|+||||||||||+++|+|+.+|++|++ .++| +++|++|++.++. .|++||+.|+... .. +
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I-~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~ 79 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSI-MLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKP 79 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEE-EECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHH
Confidence 589999999999999999999999986 6655 4799999987764 6999999987432 11 1
Q ss_pred HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 000720 689 FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL 768 (1333)
Q Consensus 689 ~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~ 768 (1333)
+.++.++..++. ...++.+.+||||||||++||||++++|+++||||||++||+..++.+.+.+.+...
T Consensus 80 ~~~~~l~~~~l~-----------~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~ 148 (325)
T TIGR01187 80 RVLEALRLVQLE-----------EFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQE 148 (325)
T ss_pred HHHHHHHHcCCc-----------chhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence 222333333332 233467789999999999999999999999999999999999998888765544333
Q ss_pred C-CCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChHHHHhhcc
Q 000720 769 S-QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIADQN 811 (1333)
Q Consensus 769 ~-~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~~l~~~~~ 811 (1333)
+ ++|+|+||||++++.. ||+|++|++|++++.|+++++.+...
T Consensus 149 ~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~~~ 193 (325)
T TIGR01187 149 QLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEPA 193 (325)
T ss_pred hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 3 7999999999998754 99999999999999999999986443
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.7e-31 Score=324.98 Aligned_cols=196 Identities=20% Similarity=0.343 Sum_probs=153.1
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|+++.+ + ..+++ ||++++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 265 ~l~~~~l~~~~--~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I-~~~g~~~~~~~~~ 333 (510)
T PRK09700 265 VFEVRNVTSRD--R--------KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEI-RLNGKDISPRSPL 333 (510)
T ss_pred EEEEeCccccC--C--------CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeE-EECCEECCCCCHH
Confidence 59999999853 1 26899 99999999999999999999999999999999999986 5544
Q ss_pred -----eEEEEcCCC---CC-CCCCHHHHhccCCcCC------------HHHHHHHHHHcccchHHHhhcCCCc-cccCCC
Q 000720 660 -----KKAYVPQSS---WI-QTGTIRENILFGKDMR------------QSFYEEVLEGCALNQDIEMWADGDL-SVVGER 717 (1333)
Q Consensus 660 -----~iayv~Q~~---~i-~~~Tv~enI~~g~~~~------------~~~~~~v~~~~~l~~d~~~~~~g~~-t~ig~~ 717 (1333)
+++|++|++ .+ .+.|++||+.++.... ....++.. .+-++.+ |.. ...+++
T Consensus 334 ~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~ 406 (510)
T PRK09700 334 DAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTA-----ENQRELL--ALKCHSVNQN 406 (510)
T ss_pred HHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHH-----HHHHHhc--CCCCCCccCc
Confidence 379999984 33 4579999998764211 11000000 1112221 111 124577
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCe
Q 000720 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGK 796 (1333)
Q Consensus 718 g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~ 796 (1333)
+.+|||||||||+||||++.+|+++||||||++||+.+.+.+.+.+.+...+|+|||++|||++.+. .||++++|++|+
T Consensus 407 ~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~ 486 (510)
T PRK09700 407 ITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGR 486 (510)
T ss_pred cccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCE
Confidence 8899999999999999999999999999999999999988887654443346899999999999875 499999999999
Q ss_pred EEEccCh
Q 000720 797 IEQSGKY 803 (1333)
Q Consensus 797 i~~~g~~ 803 (1333)
+++.++.
T Consensus 487 i~~~~~~ 493 (510)
T PRK09700 487 LTQILTN 493 (510)
T ss_pred EEEEecC
Confidence 9987765
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.5e-31 Score=324.46 Aligned_cols=200 Identities=20% Similarity=0.279 Sum_probs=155.8
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcC-CCCcEEEECC--------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-ISGAAIKVHG-------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~-~~G~~i~~~g-------- 659 (1333)
.++++|++++|+.+ .....+++ ||++++||+++|+||||||||||+++|+|..+| ++|++ .++|
T Consensus 257 ~l~~~~l~~~~~~~-----~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i-~~~g~~~~~~~~ 330 (500)
T TIGR02633 257 ILEARNLTCWDVIN-----PHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNV-FINGKPVDIRNP 330 (500)
T ss_pred eEEEeCCccccccc-----ccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEE-EECCEECCCCCH
Confidence 58999999887422 12357999 999999999999999999999999999999985 79986 5544
Q ss_pred ------eEEEEcCCC----CCCCCCHHHHhccCCc--C------CHH----HHHHHHHHcccchHHHhhcCCCccccCCC
Q 000720 660 ------KKAYVPQSS----WIQTGTIRENILFGKD--M------RQS----FYEEVLEGCALNQDIEMWADGDLSVVGER 717 (1333)
Q Consensus 660 ------~iayv~Q~~----~i~~~Tv~enI~~g~~--~------~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~ 717 (1333)
+++|++|++ .+++.|++||+.++.. . ... +.++.++.+++. ......+
T Consensus 331 ~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~ 400 (500)
T TIGR02633 331 AQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVK----------TASPFLP 400 (500)
T ss_pred HHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCcc----------CCCccCc
Confidence 379999996 3456799999988531 1 111 112222222221 0123467
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCe
Q 000720 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGK 796 (1333)
Q Consensus 718 g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~ 796 (1333)
+.+||||||||++||||++.+|+++||||||++||+.+.+.+.+.+.....+++|||++|||++++.. ||++++|++|+
T Consensus 401 ~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~ 480 (500)
T TIGR02633 401 IGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGK 480 (500)
T ss_pred cccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 78999999999999999999999999999999999999888776443333468999999999999864 99999999999
Q ss_pred EEEccChHH
Q 000720 797 IEQSGKYED 805 (1333)
Q Consensus 797 i~~~g~~~~ 805 (1333)
++..++.++
T Consensus 481 i~~~~~~~~ 489 (500)
T TIGR02633 481 LKGDFVNHA 489 (500)
T ss_pred EEEEEcccc
Confidence 998765543
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=287.01 Aligned_cols=185 Identities=18% Similarity=0.177 Sum_probs=144.2
Q ss_pred cccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCeEEEEcCCCCCCC-CCHHHHhccCCc---CCH
Q 000720 613 KLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQT-GTIRENILFGKD---MRQ 687 (1333)
Q Consensus 613 ~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~iayv~Q~~~i~~-~Tv~enI~~g~~---~~~ 687 (1333)
+++| ||++++||+++|+||||||||||+++|+|+.+|++|++..+++....+.|++.+++ .|++||+.+... .+.
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~ 81 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDG 81 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCH
Confidence 4788 99999999999999999999999999999999999997326665444556666654 699999987432 222
Q ss_pred HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 000720 688 SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL 767 (1333)
Q Consensus 688 ~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~ 767 (1333)
....+.+. +...++. ..+.+..+||||||||++||||++.+|+++|||||++++|+.+.+.+.+.+.+.
T Consensus 82 ~~~~~~~~------~~~~l~~----~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~- 150 (213)
T PRK15177 82 DEFSHFCY------QLTQLEQ----CYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQ- 150 (213)
T ss_pred HHHHHHHH------HHhChhH----HhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHH-
Confidence 22211110 1111111 123567789999999999999999999999999999999999988776654333
Q ss_pred hCCCeEEEecCchhhhh-cCCEEEEEeCCeEEEccChHHHHh
Q 000720 768 LSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 768 ~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
.+++|+|++||+++.+. .||++++|++|++++.|+.++..+
T Consensus 151 ~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 192 (213)
T PRK15177 151 LQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATA 192 (213)
T ss_pred hhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHH
Confidence 45689999999999986 599999999999999998887754
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-31 Score=277.28 Aligned_cols=203 Identities=22% Similarity=0.362 Sum_probs=165.7
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.+++++++.++.+ ...++| +|++++|++.+++|||||||||.+++|+|+++|++|.+ .++|
T Consensus 2 ~L~ie~vtK~Fg~--------k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I-~~~g~~~~~~~~~ 72 (300)
T COG4152 2 ALEIEGVTKSFGD--------KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEI-TWNGGPLSQEIKN 72 (300)
T ss_pred ceEEecchhccCc--------eeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceE-EEcCcchhhhhhh
Confidence 4788899888864 357888 99999999999999999999999999999999999997 7777
Q ss_pred eEEEEcCCCCC-CCCCHHHHhccCCc---CCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHH
Q 000720 660 KKAYVPQSSWI-QTGTIRENILFGKD---MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (1333)
Q Consensus 660 ~iayv~Q~~~i-~~~Tv~enI~~g~~---~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl 735 (1333)
+|||.|.+.-+ +..||.|-+.|-.. +.+...++- +...++.+.-.. .-.++..+||.|.+|+|++--|+
T Consensus 73 rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~-----~~~wLer~~i~~--~~~~kIk~LSKGnqQKIQfisav 145 (300)
T COG4152 73 RIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKK-----LQAWLERLEIVG--KKTKKIKELSKGNQQKIQFISAV 145 (300)
T ss_pred hcccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHH-----HHHHHHhccccc--cccchHHHhhhhhhHHHHHHHHH
Confidence 78999999876 56899999987433 222222211 222334333221 12367889999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChHHHHh
Q 000720 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 736 ~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
.++|++++||||||||||.+.+-+-+.++....+|.|||++||+|+.++. ||++++|++|+.+-.|+.+++.+
T Consensus 146 iHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~ 219 (300)
T COG4152 146 IHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRR 219 (300)
T ss_pred hcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHH
Confidence 99999999999999999988665555444555679999999999999976 99999999999999999999876
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=282.32 Aligned_cols=160 Identities=24% Similarity=0.365 Sum_probs=127.6
Q ss_pred cccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------------eEEEEcCCC--CCCC
Q 000720 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------------KKAYVPQSS--WIQT 672 (1333)
Q Consensus 611 ~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------------~iayv~Q~~--~i~~ 672 (1333)
...+++ ||++++||+++|+||||||||||+++|+|..+|++|++ .++| .++|++|+| .+++
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 83 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAV-LIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFA 83 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeE-EECCEEccccccchHHHHhhEEEEecChhhcccc
Confidence 457999 99999999999999999999999999999999999986 5543 379999998 4667
Q ss_pred CCHHHHhccCCc---CCHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 000720 673 GTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFD 745 (1333)
Q Consensus 673 ~Tv~enI~~g~~---~~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLD 745 (1333)
.|++||+.++.. .+.. +.++.++..++. ....+++.+||||||||++||||++++|+++|||
T Consensus 84 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 152 (190)
T TIGR01166 84 ADVDQDVAFGPLNLGLSEAEVERRVREALTAVGAS-----------GLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLD 152 (190)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCch-----------hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 899999987532 1211 122233333332 1234567899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhh
Q 000720 746 DPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEF 782 (1333)
Q Consensus 746 EP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~ 782 (1333)
|||++||+.+.+.+.+.+.+...+++|+|++||++++
T Consensus 153 EPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 153 EPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 9999999999888876544433458899999999875
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-30 Score=281.98 Aligned_cols=179 Identities=25% Similarity=0.271 Sum_probs=139.6
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|.+++|+. ...+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 1 l~~~~l~~~~~~--------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 71 (198)
T TIGR01189 1 LAARNLACSRGE--------RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEV-RWNGTALAEQRDEP 71 (198)
T ss_pred CEEEEEEEEECC--------EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEE-EECCEEcccchHHh
Confidence 467899999863 357999 99999999999999999999999999999999999986 5554
Q ss_pred --eEEEEcCCCCCC-CCCHHHHhccCCcCC---HHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHH
Q 000720 660 --KKAYVPQSSWIQ-TGTIRENILFGKDMR---QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733 (1333)
Q Consensus 660 --~iayv~Q~~~i~-~~Tv~enI~~g~~~~---~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LAR 733 (1333)
.++|++|++.++ ..|++||+.+..... +....+.++..++.+. .+.++.+||||||||++|||
T Consensus 72 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~la~ 140 (198)
T TIGR01189 72 HRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGF-----------EDLPAAQLSAGQQRRLALAR 140 (198)
T ss_pred hhheEEeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHH-----------hcCChhhcCHHHHHHHHHHH
Confidence 368999998765 479999997653221 2233444444444321 23567899999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEE
Q 000720 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVL 790 (1333)
Q Consensus 734 Al~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~ 790 (1333)
|++++|++++|||||++||+.+.+.+.+.+.+...+++|+|++||+...+. +++++
T Consensus 141 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~-~~~~~ 196 (198)
T TIGR01189 141 LWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLV-EAREL 196 (198)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccccc-ceEEe
Confidence 999999999999999999999877776544333356889999999975432 35544
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-30 Score=325.62 Aligned_cols=191 Identities=27% Similarity=0.370 Sum_probs=154.1
Q ss_pred CcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCC--CCcEEEECC---------eEEEEcCCCCCC-CCCHH
Q 000720 610 PTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI--SGAAIKVHG---------KKAYVPQSSWIQ-TGTIR 676 (1333)
Q Consensus 610 ~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~--~G~~i~~~g---------~iayv~Q~~~i~-~~Tv~ 676 (1333)
++.+|+| |+++++||+++|+||||||||||+++|+|..+|. +|++ .++| ++|||+|++.++ ..||+
T Consensus 80 ~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I-~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~ 158 (659)
T PLN03211 80 ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTI-LANNRKPTKQILKRTGFVTQDDILYPHLTVR 158 (659)
T ss_pred CCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEE-EECCEECchhhccceEEECcccccCCcCCHH
Confidence 3568999 9999999999999999999999999999999875 7886 6665 379999998876 56999
Q ss_pred HHhccCCc------CCHHH----HHHHHHHcccchHHHhhcCCCccccCC-CCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 000720 677 ENILFGKD------MRQSF----YEEVLEGCALNQDIEMWADGDLSVVGE-RGINLSGGQKQRIQLARAVYSNSDVYIFD 745 (1333)
Q Consensus 677 enI~~g~~------~~~~~----~~~v~~~~~l~~d~~~~~~g~~t~ig~-~g~~LSGGQkqRv~LARAl~~~~~illLD 745 (1333)
||+.|... ..++. .+++++..++ .+..+|.+|+ .+.+||||||||++||||++++|++++||
T Consensus 159 E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLD 231 (659)
T PLN03211 159 ETLVFCSLLRLPKSLTKQEKILVAESVISELGL-------TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 231 (659)
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCC-------hhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEe
Confidence 99988531 11211 2223333322 2233566654 47899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhh-h-hcCCEEEEEeCCeEEEccChHHHHh
Q 000720 746 DPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEF-L-DAADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 746 EP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~-l-~~aD~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
|||+|||+.++.++.+.+.+...+|+|||++||+++. + +.+|+|++|++|++++.|+.+++.+
T Consensus 232 EPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 232 EPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 9999999999998887554433468999999999974 4 5699999999999999999988864
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-30 Score=321.16 Aligned_cols=195 Identities=19% Similarity=0.304 Sum_probs=154.7
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|+++. ..+++ ||++++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 257 ~l~~~~~~~~------------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i-~~~g~~~~~~~~~ 323 (501)
T PRK11288 257 RLRLDGLKGP------------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQV-YLDGKPIDIRSPR 323 (501)
T ss_pred EEEEeccccC------------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceE-EECCEECCCCCHH
Confidence 5788888631 36889 99999999999999999999999999999999999986 5654
Q ss_pred -----eEEEEcCCC----CCCCCCHHHHhccCCcC---------CH----HHHHHHHHHcccchHHHhhcCCCccccCCC
Q 000720 660 -----KKAYVPQSS----WIQTGTIRENILFGKDM---------RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGER 717 (1333)
Q Consensus 660 -----~iayv~Q~~----~i~~~Tv~enI~~g~~~---------~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~ 717 (1333)
.++|++|++ ...+.|+.||+.++... .. +..++.++.+++. ......+
T Consensus 324 ~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~ 393 (501)
T PRK11288 324 DAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIK----------TPSREQL 393 (501)
T ss_pred HHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcc----------cCCccCc
Confidence 368999996 34568999999875321 11 0111222222221 1124567
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCe
Q 000720 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGK 796 (1333)
Q Consensus 718 g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~ 796 (1333)
+.+||||||||++||||++.+|+++||||||++||+.+.+.+.+.+.+...+|.|||++|||++++. .||++++|++|+
T Consensus 394 ~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~ 473 (501)
T PRK11288 394 IMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGR 473 (501)
T ss_pred cccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCE
Confidence 8899999999999999999999999999999999999988887644333445899999999999985 499999999999
Q ss_pred EEEccChHHHH
Q 000720 797 IEQSGKYEDLI 807 (1333)
Q Consensus 797 i~~~g~~~~l~ 807 (1333)
+++.|+.+++.
T Consensus 474 i~~~~~~~~~~ 484 (501)
T PRK11288 474 IAGELAREQAT 484 (501)
T ss_pred EEEEEccccCC
Confidence 99999887654
|
|
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-27 Score=272.83 Aligned_cols=442 Identities=19% Similarity=0.223 Sum_probs=283.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------cCCCChHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHH
Q 000720 331 ESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIK------FAGPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVF 403 (1333)
Q Consensus 331 ~~l~~~~~~~~~~~~~~rir~~l~~~iy~K~L~ls------~~~~~~G~i~nlms~D~~~i~~~~~-~~~~~w~~plqi~ 403 (1333)
.++......|...-+.+|.|.-+..-+|++=++-. +.+...-.---+++.|++++..... ....+..+|+-++
T Consensus 135 ~s~~~a~~ky~~~~L~Lr~R~~ltk~lh~~Y~k~~~yYkis~~d~ridNPDQrltqDv~kf~~~l~sl~s~l~~a~~di~ 214 (659)
T KOG0060|consen 135 ISLLNALLKFTTNELYLRFRKNLTKYLHRLYFKGFTYYKLSNLDDRIDNPDQRLTQDVEKFCRQLSSLYSNLLKAPFDLV 214 (659)
T ss_pred HHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHhccceEEEecccccccCChHHHHhHHHHHHHHHHHHHHHhhhccceeee
Confidence 34555567788888999999999999998876532 2211111112368889998876543 3445666788888
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHH----
Q 000720 404 LALVILYKNLGAAPAFAALFSTIFVMV----SNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQE---- 475 (1333)
Q Consensus 404 ~~l~lL~~~lG~~a~l~gl~~~~~~~~----~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~---- 475 (1333)
.-.+.++...||+.-..-++-.++... +..|++++....++. .-|-|-+- +++..|-..|-+|+-+..
T Consensus 215 ~Y~~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qekl---EGdfRy~h-~rlr~NaE~iAFY~g~~~E~~~ 290 (659)
T KOG0060|consen 215 YYTFRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKL---EGDFRYKH-SRLRVNAEEIAFYRGGQVEHQR 290 (659)
T ss_pred hhhhHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHh---hcchhhhe-eeeeecchhhhhhccCchHHHH
Confidence 888889988883322221222222222 334445554444433 23444333 245566677888887643
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhc---CCCCHHHHHHHH----HHHHH
Q 000720 476 ----FLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVC---ILLK---TPLTSGAVLSAL----ATFRI 541 (1333)
Q Consensus 476 ----f~~~i~~~R~~E~~~l~~~~~~~a~~~~~~~~~p~lv~~~tF~~~---~~~~---~~Lt~~~vft~l----alf~~ 541 (1333)
|.+.++.+|+-=... ..+..+..++- .+.+++.+.+. ++.| ..++++..++-+ ..|.-
T Consensus 291 ~~~~f~~Lv~~l~~l~~~r----~~l~f~~n~~~----Ylg~ilsy~vi~~p~Fs~h~y~~~s~aEL~~~i~~na~~~i~ 362 (659)
T KOG0060|consen 291 TDQRFRNLVQHLRELMSFR----FWLGFIDNIFD----YLGGILSYVVIAIPFFSGHVYDDLSPAELSGLISNNAFVFIY 362 (659)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH----HHHhhheeeEEeeeeecccccCCcCHHHHHHHHhhhHHHHHH
Confidence 444444444321111 11111111111 11111111111 1123 347777766544 23334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC--C-------------CCCCC---CC----CCCCCCccEEEeeeEEE
Q 000720 542 LQEPIYNLPELISMIAQTKVSLYRIQEFIKEDN--Q-------------KKPIT---EP----TSKASDVAIDIEAGEYA 599 (1333)
Q Consensus 542 l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e--~-------------~~~~~---~~----~~~~~~~~I~i~~~~fs 599 (1333)
|...+..+...-..+.+--.-..||.++.+.-. . .+... .. .....|..|++++++++
T Consensus 363 Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~~~~~~Dn~i~~e~v~l~ 442 (659)
T KOG0060|consen 363 LISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSGKAEPADNAIEFEEVSLS 442 (659)
T ss_pred HHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCcccccccceEEeeeeeec
Confidence 445555555555555665666778888775211 0 00000 00 11234678999999999
Q ss_pred cCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEE-CC---eEEEEcCCCCCCCCC
Q 000720 600 WDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV-HG---KKAYVPQSSWIQTGT 674 (1333)
Q Consensus 600 w~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~-~g---~iayv~Q~~~i~~~T 674 (1333)
=|++ .....+| |++|+.|+-+.|+||||||||+|++.+.|+-+..+|++... ++ .+-|+||.|....||
T Consensus 443 tPt~------g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~GT 516 (659)
T KOG0060|consen 443 TPTN------GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLGT 516 (659)
T ss_pred CCCC------CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCCccccc
Confidence 8764 2334455 99999999999999999999999999999999888876322 23 388999999999999
Q ss_pred HHHHhccCC--------cCCHHHHHHHHHHcccchHHHhhcCCCc-cccCCCCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 000720 675 IRENILFGK--------DMRQSFYEEVLEGCALNQDIEMWADGDL-SVVGERGINLSGGQKQRIQLARAVYSNSDVYIFD 745 (1333)
Q Consensus 675 v~enI~~g~--------~~~~~~~~~v~~~~~l~~d~~~~~~g~~-t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLD 745 (1333)
.||-+.+.. ..+.++..+.++..++.+-++. ..|.+ ..+-+-...||+|||||++.||-+|++|++-+||
T Consensus 517 LRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r-~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLD 595 (659)
T KOG0060|consen 517 LRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLER-EGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILD 595 (659)
T ss_pred hhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHH-hCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEee
Confidence 999999872 1234566677777777654443 34443 3334567789999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeC
Q 000720 746 DPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKD 794 (1333)
Q Consensus 746 EP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~ 794 (1333)
|.|||||.++...++..|. ..|.|.|-|.|+-..-+.-|.++-|+.
T Consensus 596 E~TSAv~~dvE~~~Yr~~r---~~giT~iSVgHRkSL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 596 ECTSAVTEDVEGALYRKCR---EMGITFISVGHRKSLWKFHDYVLRMDG 641 (659)
T ss_pred chhhhccHHHHHHHHHHHH---HcCCeEEEeccHHHHHhhhhEEEEecC
Confidence 9999999999888887543 358899999999988888999999975
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=317.59 Aligned_cols=198 Identities=27% Similarity=0.378 Sum_probs=158.0
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--eEEEEc
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVP 665 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--~iayv~ 665 (1333)
..++++|++++|+. .+.+++ ||+|++||+++|+||||||||||+++|+|+.+|++|++ .+++ ++||++
T Consensus 321 ~~l~~~~l~~~~~~--------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i-~~~~~~~i~~v~ 391 (552)
T TIGR03719 321 KVIEAENLSKGFGD--------KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTI-KIGETVKLAYVD 391 (552)
T ss_pred eEEEEeeEEEEECC--------eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEE-EECCceEEEEEe
Confidence 46999999999853 358999 99999999999999999999999999999999999987 6655 589999
Q ss_pred CCCC-C-CCCCHHHHhccCCcCC-----HHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccC
Q 000720 666 QSSW-I-QTGTIRENILFGKDMR-----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSN 738 (1333)
Q Consensus 666 Q~~~-i-~~~Tv~enI~~g~~~~-----~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~ 738 (1333)
|++. + .+.|++||+.++.... +.+.++.++..++.. ...+.++.+||||||||++||||++.+
T Consensus 392 q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGe~qrv~la~al~~~ 461 (552)
T TIGR03719 392 QSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKG----------SDQQKKVGQLSGGERNRVHLAKTLKSG 461 (552)
T ss_pred CCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCCh----------hHhcCchhhCCHHHHHHHHHHHHHhhC
Confidence 9962 4 4579999998864321 111222333333211 113467789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeC-CeEE-EccChHHHHh
Q 000720 739 SDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKD-GKIE-QSGKYEDLIA 808 (1333)
Q Consensus 739 ~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~-G~i~-~~g~~~~l~~ 808 (1333)
|+++||||||++||+.+.+.+.+. ++.. +.|||+||||++++.. ||+|++|++ |++. ..|+++++.+
T Consensus 462 p~lllLDEPt~~LD~~~~~~l~~~-l~~~--~~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 462 GNVLLLDEPTNDLDVETLRALEEA-LLEF--AGCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEE 531 (552)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHH-HHHC--CCeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHH
Confidence 999999999999999998877654 4433 2499999999999865 999999986 5875 6788877755
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-30 Score=263.34 Aligned_cols=140 Identities=31% Similarity=0.525 Sum_probs=125.1
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--eEEEEcCC
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVPQS 667 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--~iayv~Q~ 667 (1333)
++++|+++.|+.. +.+++ |+++++||+++|+||||||||||+++|+|+.+|.+|++ .+++ .++|++|
T Consensus 1 l~~~~l~~~~~~~--------~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i-~~~~~~~i~~~~~- 70 (144)
T cd03221 1 IELENLSKTYGGK--------LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV-TWGSTVKIGYFEQ- 70 (144)
T ss_pred CEEEEEEEEECCc--------eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEE-EECCeEEEEEEcc-
Confidence 4688999998532 57899 99999999999999999999999999999999999986 7776 5788888
Q ss_pred CCCCCCCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCC
Q 000720 668 SWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDP 747 (1333)
Q Consensus 668 ~~i~~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP 747 (1333)
||+|||||++||||++++|++++||||
T Consensus 71 -----------------------------------------------------lS~G~~~rv~laral~~~p~illlDEP 97 (144)
T cd03221 71 -----------------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEP 97 (144)
T ss_pred -----------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCe
Q 000720 748 FSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGK 796 (1333)
Q Consensus 748 ~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~ 796 (1333)
+++||+.+...+.+. ++.+ ++|+|++||+++.+.. ||++++|++|+
T Consensus 98 ~~~LD~~~~~~l~~~-l~~~--~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 98 TNHLDLESIEALEEA-LKEY--PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred ccCCCHHHHHHHHHH-HHHc--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 999999998877654 4433 5799999999999865 99999999985
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-30 Score=319.14 Aligned_cols=194 Identities=19% Similarity=0.351 Sum_probs=153.9
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|+++ ..+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 257 ~l~~~~l~~-------------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I-~~~g~~i~~~~~~ 322 (501)
T PRK10762 257 RLKVDNLSG-------------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYV-TLDGHEVVTRSPQ 322 (501)
T ss_pred EEEEeCccc-------------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEE-EECCEECCCCCHH
Confidence 578888752 24888 99999999999999999999999999999999999986 6654
Q ss_pred -----eEEEEcCCC---CC-CCCCHHHHhccCCc---------CCHH----HHHHHHHHcccchHHHhhcCCCccccCCC
Q 000720 660 -----KKAYVPQSS---WI-QTGTIRENILFGKD---------MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGER 717 (1333)
Q Consensus 660 -----~iayv~Q~~---~i-~~~Tv~enI~~g~~---------~~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~ 717 (1333)
.+||++|++ .+ ++.|++||+.++.. .+.. +.++.++.+++. ....+++
T Consensus 323 ~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~ 392 (501)
T PRK10762 323 DGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIK----------TPSMEQA 392 (501)
T ss_pred HHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCC----------CCCccCc
Confidence 379999997 33 45799999987521 1111 111222222221 1124577
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCe
Q 000720 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGK 796 (1333)
Q Consensus 718 g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~ 796 (1333)
+.+||||||||++||||++.+|+++||||||++||+.+.+.+.+.+.+...+|+|+|++|||++++.. ||+|++|++|+
T Consensus 393 ~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~ 472 (501)
T PRK10762 393 IGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGR 472 (501)
T ss_pred hhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCE
Confidence 88999999999999999999999999999999999999888876544433468999999999998764 99999999999
Q ss_pred EEEccChHHHH
Q 000720 797 IEQSGKYEDLI 807 (1333)
Q Consensus 797 i~~~g~~~~l~ 807 (1333)
++..|+.+++.
T Consensus 473 i~~~~~~~~~~ 483 (501)
T PRK10762 473 ISGEFTREQAT 483 (501)
T ss_pred EEEEeccccCC
Confidence 99999887653
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=316.18 Aligned_cols=198 Identities=25% Similarity=0.364 Sum_probs=158.8
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--eEEEEc
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVP 665 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--~iayv~ 665 (1333)
..++++|++++|+. .+.+++ ||+|++||+++|+||||||||||+++|+|+++|++|++ .+++ ++||+|
T Consensus 323 ~~l~~~~l~~~~~~--------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i-~~~~~~~i~~v~ 393 (556)
T PRK11819 323 KVIEAENLSKSFGD--------RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTI-KIGETVKLAYVD 393 (556)
T ss_pred eEEEEEeEEEEECC--------eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE-EECCceEEEEEe
Confidence 46999999999953 358999 99999999999999999999999999999999999987 6655 589999
Q ss_pred CCC-CC-CCCCHHHHhccCCcCC-----HHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccC
Q 000720 666 QSS-WI-QTGTIRENILFGKDMR-----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSN 738 (1333)
Q Consensus 666 Q~~-~i-~~~Tv~enI~~g~~~~-----~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~ 738 (1333)
|++ .+ .+.|++||+.++.... ....++.++..++.. ...+.++.+||||||||++||||++.+
T Consensus 394 q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~qrv~la~al~~~ 463 (556)
T PRK11819 394 QSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKG----------GDQQKKVGVLSGGERNRLHLAKTLKQG 463 (556)
T ss_pred CchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCCh----------hHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 996 44 4569999998764221 111222333322211 113467789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeC-CeEE-EccChHHHHh
Q 000720 739 SDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKD-GKIE-QSGKYEDLIA 808 (1333)
Q Consensus 739 ~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~-G~i~-~~g~~~~l~~ 808 (1333)
|+++||||||++||+.+.+.+.+. +... . .|+|+||||++++.. ||+|++|++ |++. ..|+++++.+
T Consensus 464 p~lllLDEPt~~LD~~~~~~l~~~-l~~~-~-~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~ 533 (556)
T PRK11819 464 GNVLLLDEPTNDLDVETLRALEEA-LLEF-P-GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEE 533 (556)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHH-HHhC-C-CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHH
Confidence 999999999999999998877764 4433 3 499999999999865 999999986 7876 6899988876
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=319.61 Aligned_cols=199 Identities=24% Similarity=0.435 Sum_probs=158.5
Q ss_pred CccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--eEEEE
Q 000720 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYV 664 (1333)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--~iayv 664 (1333)
+..|+++|++++|+. ..++++ ||+|++|++++|+||||||||||+++|+|+.+|++|++ .+.+ ++||+
T Consensus 310 ~~~l~~~~l~~~y~~--------~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i-~~~~~~~igy~ 380 (638)
T PRK10636 310 NPLLKMEKVSAGYGD--------RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEI-GLAKGIKLGYF 380 (638)
T ss_pred CceEEEEeeEEEeCC--------eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeE-EECCCEEEEEe
Confidence 446999999999963 358999 99999999999999999999999999999999999996 6643 68999
Q ss_pred cCCC--CCC-CCCHHHHhcc-CCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCC
Q 000720 665 PQSS--WIQ-TGTIRENILF-GKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSD 740 (1333)
Q Consensus 665 ~Q~~--~i~-~~Tv~enI~~-g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ 740 (1333)
+|++ .+. ..|+.+++.. .........+++++.+++..+ ....++.+||||||||++||||++++|+
T Consensus 381 ~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~----------~~~~~~~~LSgGekqRl~La~~l~~~p~ 450 (638)
T PRK10636 381 AQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGD----------KVTEETRRFSGGEKARLVLALIVWQRPN 450 (638)
T ss_pred cCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChh----------HhcCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 9975 232 4588888742 111122233444444443211 2235678999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEE-EccChHHHHh
Q 000720 741 VYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE-QSGKYEDLIA 808 (1333)
Q Consensus 741 illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~-~~g~~~~l~~ 808 (1333)
++||||||++||+.+...+.+ ++... +.|||+||||++++.. ||+|++|++|+++ +.|+++++..
T Consensus 451 lLlLDEPt~~LD~~~~~~l~~-~L~~~--~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 451 LLLLDEPTNHLDLDMRQALTE-ALIDF--EGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred EEEEcCCCCCCCHHHHHHHHH-HHHHc--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 999999999999999887765 44444 3599999999999865 9999999999997 8899988743
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.2e-30 Score=277.35 Aligned_cols=201 Identities=26% Similarity=0.345 Sum_probs=158.7
Q ss_pred cEEEeeeEEEcCCcccccCCC--cccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCeEEEEcC
Q 000720 590 AIDIEAGEYAWDAREENFKKP--TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQ 666 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~--~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~iayv~Q 666 (1333)
.++++|.+..|+.... +... ...++| ||+|++||.++|+|+|||||||+-++|+|+++|++|++ .++|+...
T Consensus 4 ll~v~~l~k~f~~~~~-~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i-~f~g~~i~--- 78 (268)
T COG4608 4 LLEVKNLKKYFPVGKG-FGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEI-LFEGKDIT--- 78 (268)
T ss_pred eEEEeccEEEEecccc-cCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceE-EEcCcchh---
Confidence 4778888888876421 1122 356788 99999999999999999999999999999999999997 66665310
Q ss_pred CCCCCCCCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 000720 667 SSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDD 746 (1333)
Q Consensus 667 ~~~i~~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDE 746 (1333)
..+ .....+++.+.++..++..+. ..+.+.+|||||||||+|||||.-+|+++++||
T Consensus 79 -----~~~--------~~~~~~~v~elL~~Vgl~~~~----------~~ryPhelSGGQrQRi~IARALal~P~liV~DE 135 (268)
T COG4608 79 -----KLS--------KEERRERVLELLEKVGLPEEF----------LYRYPHELSGGQRQRIGIARALALNPKLIVADE 135 (268)
T ss_pred -----hcc--------hhHHHHHHHHHHHHhCCCHHH----------hhcCCcccCchhhhhHHHHHHHhhCCcEEEecC
Confidence 000 112234566777777765543 236788999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHH-hCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChHHHHhhcchHHHHHH
Q 000720 747 PFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIADQNSELVRQM 818 (1333)
Q Consensus 747 P~saLD~~~~~~l~~~~~~~~-~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~ 818 (1333)
|+|+||..++.++.+.+.... ..|-|.+++|||++.+.+ ||+|.||..|+|++.|+.+++..++...+.+.+
T Consensus 136 pvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~HpYTk~L 209 (268)
T COG4608 136 PVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPLHPYTKAL 209 (268)
T ss_pred chhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCCCHHHHHH
Confidence 999999999998876443322 247899999999999987 999999999999999999999986655555433
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-30 Score=317.90 Aligned_cols=195 Identities=19% Similarity=0.344 Sum_probs=153.0
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|++. ..+++ ||++++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 268 ~l~~~~l~~-------------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i-~~~g~~i~~~~~~ 333 (510)
T PRK15439 268 VLTVEDLTG-------------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRI-MLNGKEINALSTA 333 (510)
T ss_pred eEEEeCCCC-------------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEE-EECCEECCCCCHH
Confidence 588888762 13888 99999999999999999999999999999999999986 6554
Q ss_pred -----eEEEEcCCC----CCCCCCHHHHhccCC----cC--CHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCC
Q 000720 660 -----KKAYVPQSS----WIQTGTIRENILFGK----DM--RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1333)
Q Consensus 660 -----~iayv~Q~~----~i~~~Tv~enI~~g~----~~--~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~ 720 (1333)
.++|+||++ ...+.|+.||+.... .. ... ..++.++.+++. ....++++.+
T Consensus 334 ~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~ 403 (510)
T PRK15439 334 QRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIK----------FNHAEQAART 403 (510)
T ss_pred HHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCC----------CCCccCcccc
Confidence 379999985 234569999985321 11 111 111222222211 0234577889
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEE
Q 000720 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1333)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~ 799 (1333)
||||||||++||||++.+|+++||||||++||+.+.+.+.+.+.+...+++|+|++|||++++.. ||++++|++|+++.
T Consensus 404 LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~ 483 (510)
T PRK15439 404 LSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISG 483 (510)
T ss_pred CCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999888876544433458999999999999865 99999999999999
Q ss_pred ccChHHHHh
Q 000720 800 SGKYEDLIA 808 (1333)
Q Consensus 800 ~g~~~~l~~ 808 (1333)
.|+.+++..
T Consensus 484 ~~~~~~~~~ 492 (510)
T PRK15439 484 ALTGAAINV 492 (510)
T ss_pred EEccccCCH
Confidence 998877653
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-29 Score=315.50 Aligned_cols=192 Identities=20% Similarity=0.309 Sum_probs=155.5
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCeEEEEcCC
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQS 667 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~iayv~Q~ 667 (1333)
..++++|++++|+. ..|++ |+++++||+++|+||||||||||+++|+|+++|++|++ .++-+++|+||+
T Consensus 339 ~~l~~~~ls~~~~~---------~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I-~~~~~i~y~~Q~ 408 (590)
T PRK13409 339 TLVEYPDLTKKLGD---------FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEV-DPELKISYKPQY 408 (590)
T ss_pred eEEEEcceEEEECC---------EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EEeeeEEEeccc
Confidence 46899999998853 23888 99999999999999999999999999999999999986 666679999999
Q ss_pred CCC-CCCCHHHHhccCCc-CC-HHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEE
Q 000720 668 SWI-QTGTIRENILFGKD-MR-QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIF 744 (1333)
Q Consensus 668 ~~i-~~~Tv~enI~~g~~-~~-~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illL 744 (1333)
+.. ++.||+||+.++.. +. ....+++++..++.+ ..+..+.+|||||||||+|||||+++|++|||
T Consensus 409 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~-----------~~~~~~~~LSGGe~QRvaiAraL~~~p~llLL 477 (590)
T PRK13409 409 IKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLER-----------LLDKNVKDLSGGELQRVAIAACLSRDADLYLL 477 (590)
T ss_pred ccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHH-----------HHhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 754 56799999987532 11 222344455544432 23467789999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhhc-CCEEEEEeCCeEEEccC
Q 000720 745 DDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGK 802 (1333)
Q Consensus 745 DEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~ 802 (1333)
||||++||+.++..+.+.+.+... .++|+|+||||++++.. ||++++|++ ++...|+
T Consensus 478 DEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 478 DEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 999999999998887764433333 37899999999999865 999999965 7776666
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-29 Score=267.46 Aligned_cols=151 Identities=23% Similarity=0.310 Sum_probs=126.5
Q ss_pred eeeEEEcCCcccccCCCcccccCCeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC-eEEEEcCCCCCCC
Q 000720 594 EAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-KKAYVPQSSWIQT 672 (1333)
Q Consensus 594 ~~~~fsw~~~~~~~~~~~~~L~~nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g-~iayv~Q~~~i~~ 672 (1333)
.|++++|.. ...+++++++++||+++|+||||||||||+++|+|+++|++|++ .++| .++|++|++.
T Consensus 4 ~~l~~~~~~--------~~~l~~~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~i~~~~q~~~--- 71 (177)
T cd03222 4 PDCVKRYGV--------FFLLVELGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDND-EWDGITPVYKPQYID--- 71 (177)
T ss_pred CCeEEEECC--------EEEEccCcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEE-EECCEEEEEEcccCC---
Confidence 356666643 24566678999999999999999999999999999999999996 7877 4899988642
Q ss_pred CCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCC
Q 000720 673 GTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVD 752 (1333)
Q Consensus 673 ~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD 752 (1333)
||||||||++||||++.+|++++|||||++||
T Consensus 72 ------------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD 103 (177)
T cd03222 72 ------------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLD 103 (177)
T ss_pred ------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCC
Confidence 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCC-CeEEEecCchhhhhc-CCEEEEEeCCeEEEc--cChH
Q 000720 753 AHTGTHLFKQCLMGLLSQ-KTVLYTTHQLEFLDA-ADLVLVMKDGKIEQS--GKYE 804 (1333)
Q Consensus 753 ~~~~~~l~~~~~~~~~~~-~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~--g~~~ 804 (1333)
+.+.+.+.+.+.+...++ +|+|++||+++++.. ||++++|+++-.+.+ |.+.
T Consensus 104 ~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~ 159 (177)
T cd03222 104 IEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPK 159 (177)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCc
Confidence 999887776544433454 899999999999875 999999998765533 4444
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.2e-29 Score=277.64 Aligned_cols=217 Identities=26% Similarity=0.400 Sum_probs=170.0
Q ss_pred CccEEEeeeEEEcCCcccccC---CCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----
Q 000720 588 DVAIDIEAGEYAWDAREENFK---KPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---- 659 (1333)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~---~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---- 659 (1333)
...++.+|+...|+-+..-+. ......++ |+++++||.++|||++|||||||-.+|++++++. |.+ .+.|
T Consensus 274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I-~F~G~~i~ 351 (534)
T COG4172 274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEI-RFDGQDID 351 (534)
T ss_pred CceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceE-EECCcccc
Confidence 345777888877765411111 11234667 9999999999999999999999999999999876 876 6555
Q ss_pred ------------eEEEEcCCCC---CCCCCHHHHhccCCcC------CHHHHHHH---HHHcccchHHHhhcCCCccccC
Q 000720 660 ------------KKAYVPQSSW---IQTGTIRENILFGKDM------RQSFYEEV---LEGCALNQDIEMWADGDLSVVG 715 (1333)
Q Consensus 660 ------------~iayv~Q~~~---i~~~Tv~enI~~g~~~------~~~~~~~v---~~~~~l~~d~~~~~~g~~t~ig 715 (1333)
++-.|+|||+ -+..||.+-|.-|... +.++.+++ ++..+|+. ...+
T Consensus 352 ~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp----------~~r~ 421 (534)
T COG4172 352 GLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDP----------ATRN 421 (534)
T ss_pred ccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCCh----------hHhh
Confidence 3578999996 2567999999766432 23444444 34444433 2335
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--hCCCeEEEecCchhhhhc-CCEEEEE
Q 000720 716 ERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL--LSQKTVLYTTHQLEFLDA-ADLVLVM 792 (1333)
Q Consensus 716 ~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~--~~~~TvIlvtH~~~~l~~-aD~i~vl 792 (1333)
+.+.+.||||||||+||||+.-+|++++|||||||||..++.++.+. ++.+ +.+-+-+++|||+..+.. ||+|+||
T Consensus 422 RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~L-Lr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm 500 (534)
T COG4172 422 RYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDL-LRDLQQKHGLSYLFISHDLAVVRALCHRVIVM 500 (534)
T ss_pred cCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHH-HHHHHHHhCCeEEEEeccHHHHHHhhceEEEE
Confidence 77899999999999999999999999999999999999999999874 4433 346799999999999987 9999999
Q ss_pred eCCeEEEccChHHHHhhcchHHHHH
Q 000720 793 KDGKIEQSGKYEDLIADQNSELVRQ 817 (1333)
Q Consensus 793 ~~G~i~~~g~~~~l~~~~~~~~~~~ 817 (1333)
++|+|+++|+.+++++++..++.+.
T Consensus 501 ~~GkiVE~G~~~~if~~P~~~YT~~ 525 (534)
T COG4172 501 RDGKIVEQGPTEAVFANPQHEYTRA 525 (534)
T ss_pred eCCEEeeeCCHHHHhcCCCcHHHHH
Confidence 9999999999999998776666553
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-29 Score=317.55 Aligned_cols=197 Identities=21% Similarity=0.347 Sum_probs=156.9
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--eEEEEc
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVP 665 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--~iayv~ 665 (1333)
..++++|++++|+.+ .+++++ ||+|++|++++|+|||||||||||++|+|+++|++|++ .+++ ++||++
T Consensus 507 ~~L~~~~ls~~y~~~-------~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I-~~~~~~~igyv~ 578 (718)
T PLN03073 507 PIISFSDASFGYPGG-------PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTV-FRSAKVRMAVFS 578 (718)
T ss_pred ceEEEEeeEEEeCCC-------CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceE-EECCceeEEEEe
Confidence 469999999999643 357999 99999999999999999999999999999999999986 6554 589999
Q ss_pred CCCCCCCCCHHHHhccC-----CcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCC
Q 000720 666 QSSWIQTGTIRENILFG-----KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSD 740 (1333)
Q Consensus 666 Q~~~i~~~Tv~enI~~g-----~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ 740 (1333)
|++. ...++.+|.... ....+++.+++++.+++..+. ...++.+||||||||++||||++.+|+
T Consensus 579 Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~----------~~~~~~~LSgGqkqRvaLAraL~~~p~ 647 (718)
T PLN03073 579 QHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAKITFKKPH 647 (718)
T ss_pred cccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHH----------hcCCccccCHHHHHHHHHHHHHhcCCC
Confidence 9863 334555553321 112344555566666554221 235678999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEE-EccChHHHH
Q 000720 741 VYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE-QSGKYEDLI 807 (1333)
Q Consensus 741 illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~-~~g~~~~l~ 807 (1333)
++||||||++||+.+.+.+.+.+ ... +.|+|+||||++++.. ||++++|++|+++ ..|+++++.
T Consensus 648 lLLLDEPT~~LD~~s~~~l~~~L-~~~--~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~~ 713 (718)
T PLN03073 648 ILLLDEPSNHLDLDAVEALIQGL-VLF--QGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYK 713 (718)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHH-HHc--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHH
Confidence 99999999999999988776543 222 3599999999999875 9999999999998 788887764
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-29 Score=317.18 Aligned_cols=199 Identities=27% Similarity=0.407 Sum_probs=157.7
Q ss_pred CccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--eEEEE
Q 000720 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYV 664 (1333)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--~iayv 664 (1333)
+..++++|++++|+. .+++++ ||+|++|++++|+||||||||||+++|+|+++|++|++ .+.. ++||+
T Consensus 317 ~~~l~~~~l~~~~~~--------~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i-~~~~~~~i~y~ 387 (635)
T PRK11147 317 KIVFEMENVNYQIDG--------KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRI-HCGTKLEVAYF 387 (635)
T ss_pred CceEEEeeeEEEECC--------eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEE-EECCCcEEEEE
Confidence 346999999999963 358999 99999999999999999999999999999999999987 5643 58999
Q ss_pred cCCC--CCCCCCHHHHhccCCc-C--C--HHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHcc
Q 000720 665 PQSS--WIQTGTIRENILFGKD-M--R--QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS 737 (1333)
Q Consensus 665 ~Q~~--~i~~~Tv~enI~~g~~-~--~--~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~ 737 (1333)
+|++ ...+.||.||+.++.. . + .....+.++..++..+ ....++.+||||||||++||||++.
T Consensus 388 ~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGekqRl~la~al~~ 457 (635)
T PRK11147 388 DQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPK----------RAMTPVKALSGGERNRLLLARLFLK 457 (635)
T ss_pred eCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHH----------HHhChhhhCCHHHHHHHHHHHHHhc
Confidence 9985 3345699999987532 1 1 1112223333332211 1335678999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEe-CCeEE-EccChHHHHh
Q 000720 738 NSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMK-DGKIE-QSGKYEDLIA 808 (1333)
Q Consensus 738 ~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~-~G~i~-~~g~~~~l~~ 808 (1333)
+|+++||||||++||+.+.+.+.+ +++.. +.|||+||||.+++.. ||+|++|+ +|++. +.|+|+++..
T Consensus 458 ~p~lLlLDEPt~~LD~~~~~~l~~-~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~~ 528 (635)
T PRK11147 458 PSNLLILDEPTNDLDVETLELLEE-LLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDARQ 528 (635)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHH-HHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHHH
Confidence 999999999999999998776554 44433 4699999999999865 99999998 89986 5789988753
|
|
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.9e-29 Score=316.32 Aligned_cols=201 Identities=26% Similarity=0.365 Sum_probs=163.1
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|+++.|+..+ ...+.+++ ||++++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 4 ~l~~~nl~~~y~~~~----~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i-~~~g~~i~~~~~~ 78 (648)
T PRK10535 4 LLELKDIRRSYPSGE----EQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTY-RVAGQDVATLDAD 78 (648)
T ss_pred EEEEeeEEEEeCCCC----CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEE-EECCEEcCcCCHH
Confidence 488999999996430 12468999 99999999999999999999999999999999999986 5543
Q ss_pred --------eEEEEcCCCCCCC-CCHHHHhccCCcC---C-H---HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCCh
Q 000720 660 --------KKAYVPQSSWIQT-GTIRENILFGKDM---R-Q---SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1333)
Q Consensus 660 --------~iayv~Q~~~i~~-~Tv~enI~~g~~~---~-~---~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSG 723 (1333)
.++|++|++.++. .|+.||+.++... . . ++..+.++.+++ ....+.++.+|||
T Consensus 79 ~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl-----------~~~~~~~~~~LS~ 147 (648)
T PRK10535 79 ALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGL-----------EDRVEYQPSQLSG 147 (648)
T ss_pred HHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCC-----------hhhhcCCcccCCH
Confidence 4799999998764 6999999864311 1 1 112222333322 2334567789999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccC
Q 000720 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGK 802 (1333)
Q Consensus 724 GQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~-~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~ 802 (1333)
|||||++||||++++|++++|||||++||+.+.+.+.+. ++.+ .+++|+|++||+++.++.||++++|++|++++.|+
T Consensus 148 Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~l-l~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~ 226 (648)
T PRK10535 148 GQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAI-LHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPP 226 (648)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHH-HHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecC
Confidence 999999999999999999999999999999998877764 4444 35899999999999888899999999999999999
Q ss_pred hHHHH
Q 000720 803 YEDLI 807 (1333)
Q Consensus 803 ~~~l~ 807 (1333)
.++..
T Consensus 227 ~~~~~ 231 (648)
T PRK10535 227 AQEKV 231 (648)
T ss_pred ccccc
Confidence 88774
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-29 Score=310.58 Aligned_cols=193 Identities=22% Similarity=0.327 Sum_probs=149.2
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcC-CCCcEEEECC-------
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-ISGAAIKVHG------- 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~-~~G~~i~~~g------- 659 (1333)
..++++|++++|+.. .++++ ||++++||+++|+||||||||||+++|+|+.++ ++|++ .++|
T Consensus 259 ~~l~~~~l~~~~~~~--------~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i-~~~g~~~~~~~ 329 (490)
T PRK10938 259 PRIVLNNGVVSYNDR--------PILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDL-TLFGRRRGSGE 329 (490)
T ss_pred ceEEEeceEEEECCe--------eEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeE-EEecccCCCCC
Confidence 469999999999632 57999 999999999999999999999999999998875 68876 5443
Q ss_pred -------eEEEEcCCCCC-C--CCCHHHHhccCCc--------CCH---HHHHHHHHHcccchHHHhhcCCCccccCCCC
Q 000720 660 -------KKAYVPQSSWI-Q--TGTIRENILFGKD--------MRQ---SFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1333)
Q Consensus 660 -------~iayv~Q~~~i-~--~~Tv~enI~~g~~--------~~~---~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g 718 (1333)
+++|++|++.+ + ..++++++.++.. ... ++.++.++.+++..+ ....++
T Consensus 330 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~ 399 (490)
T PRK10938 330 TIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKR----------TADAPF 399 (490)
T ss_pred CHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchh----------hccCch
Confidence 37999998754 2 2477777754311 011 122333443333210 234577
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC-eEEEecCchhhhhc--CCEEEEEeCC
Q 000720 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK-TVLYTTHQLEFLDA--ADLVLVMKDG 795 (1333)
Q Consensus 719 ~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~-TvIlvtH~~~~l~~--aD~i~vl~~G 795 (1333)
.+||||||||++||||++.+|+++||||||++||+++.+.+.+.+.+...+++ |||++|||++++.. ||++++|++|
T Consensus 400 ~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G 479 (490)
T PRK10938 400 HSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDG 479 (490)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCC
Confidence 89999999999999999999999999999999999998888765444334454 69999999999863 8999999999
Q ss_pred eEEEc
Q 000720 796 KIEQS 800 (1333)
Q Consensus 796 ~i~~~ 800 (1333)
+|++.
T Consensus 480 ~i~~~ 484 (490)
T PRK10938 480 DIYRY 484 (490)
T ss_pred ceEEe
Confidence 98764
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-29 Score=308.67 Aligned_cols=201 Identities=18% Similarity=0.268 Sum_probs=152.0
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCe-------
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK------- 660 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~------- 660 (1333)
..|+++|+++.+ .+.+++ ||++++||+++|+||||||||||+++|+|+.+|++|++ .++|+
T Consensus 249 ~~i~~~~l~~~~----------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~i~~~~~ 317 (491)
T PRK10982 249 VILEVRNLTSLR----------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTI-TLHGKKINNHNA 317 (491)
T ss_pred cEEEEeCccccc----------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEE-EECCEECCCCCH
Confidence 368999998862 147899 99999999999999999999999999999999999986 66551
Q ss_pred -------EEEEcCCCC----CCCCCHHHHhccC-----Cc----CCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCC
Q 000720 661 -------KAYVPQSSW----IQTGTIRENILFG-----KD----MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1333)
Q Consensus 661 -------iayv~Q~~~----i~~~Tv~enI~~g-----~~----~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~ 720 (1333)
++|++|++- ..+.|+.+|+.+. .. .+....++. ..+-++.+..++ ...+.++.+
T Consensus 318 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~-~~~~~~~~~ 391 (491)
T PRK10982 318 NEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSD-----TQWVIDSMRVKT-PGHRTQIGS 391 (491)
T ss_pred HHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHH-----HHHHHHhcCccC-CCccccccc
Confidence 789999852 3456777774322 11 011111110 011122221111 124578899
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEE
Q 000720 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1333)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~ 799 (1333)
||||||||++||||++.+|+|+||||||+|||+.+.+.+++.+.....+++|||++|||++++.. ||++++|++|+++.
T Consensus 392 LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~ 471 (491)
T PRK10982 392 LSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAG 471 (491)
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999988877543334468999999999999864 99999999999998
Q ss_pred ccChHHH
Q 000720 800 SGKYEDL 806 (1333)
Q Consensus 800 ~g~~~~l 806 (1333)
.++.+++
T Consensus 472 ~~~~~~~ 478 (491)
T PRK10982 472 IVDTKTT 478 (491)
T ss_pred EEccccC
Confidence 7766433
|
|
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-29 Score=267.90 Aligned_cols=199 Identities=24% Similarity=0.351 Sum_probs=155.4
Q ss_pred CCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEEC-------
Q 000720 587 SDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH------- 658 (1333)
Q Consensus 587 ~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~------- 658 (1333)
.+..|+++|+++.+.. +++|++ +.+|++||..+|+|||||||||||+.++|+.+|.+|.+ .+.
T Consensus 28 ~~~li~l~~v~v~r~g--------k~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~-~~~G~~~G~~ 98 (257)
T COG1119 28 NEPLIELKNVSVRRNG--------KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDV-TLLGRRFGKG 98 (257)
T ss_pred CcceEEecceEEEECC--------EeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCce-eeeeeeccCC
Confidence 4457999999999965 479999 99999999999999999999999999999999998875 332
Q ss_pred -------CeEEEEcCC---CCCCCCCHHHHhccCC---------cCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCC
Q 000720 659 -------GKKAYVPQS---SWIQTGTIRENILFGK---------DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1333)
Q Consensus 659 -------g~iayv~Q~---~~i~~~Tv~enI~~g~---------~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~ 719 (1333)
.+||||+-+ -...+.+++|-|+-|. +++++.++++.. +. +. .|.....++.-.
T Consensus 99 ~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~---ll---e~--~g~~~la~r~~~ 170 (257)
T COG1119 99 ETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQW---LL---EL--LGAKHLADRPFG 170 (257)
T ss_pred cchHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHH---HH---HH--cchhhhccCchh
Confidence 247898853 2233568999888652 223333322211 11 11 122234557788
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCeEEEecCchhhhhc-CCEEEEEeCCe
Q 000720 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLDA-ADLVLVMKDGK 796 (1333)
Q Consensus 720 ~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~--~~TvIlvtH~~~~l~~-aD~i~vl~~G~ 796 (1333)
+||-|||||+-||||++.+|.++|||||++|||...++.+.+.+...... +.|+|+|||+.+.++. .++++.+++|+
T Consensus 171 ~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~ 250 (257)
T COG1119 171 SLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGE 250 (257)
T ss_pred hcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCc
Confidence 99999999999999999999999999999999999987777655444333 5799999999999865 79999999999
Q ss_pred EEEccC
Q 000720 797 IEQSGK 802 (1333)
Q Consensus 797 i~~~g~ 802 (1333)
++.+|.
T Consensus 251 v~~~g~ 256 (257)
T COG1119 251 VVAQGK 256 (257)
T ss_pred eeeccc
Confidence 998874
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.5e-29 Score=280.24 Aligned_cols=186 Identities=22% Similarity=0.271 Sum_probs=140.7
Q ss_pred eeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEE----------EECC----
Q 000720 595 AGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI----------KVHG---- 659 (1333)
Q Consensus 595 ~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i----------~~~g---- 659 (1333)
+++++|+.. .+.+++ + .+++||+++|+||||||||||+++|+|+++|++|++. .++|
T Consensus 5 ~~~~~y~~~-------~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~ 76 (255)
T cd03236 5 EPVHRYGPN-------SFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQ 76 (255)
T ss_pred CcceeecCc-------chhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhh
Confidence 567777532 357888 8 4999999999999999999999999999999999862 1222
Q ss_pred -----------eEEEEcCCCCCCCCCHHHHhccCCcC--CHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHH
Q 000720 660 -----------KKAYVPQSSWIQTGTIRENILFGKDM--RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1333)
Q Consensus 660 -----------~iayv~Q~~~i~~~Tv~enI~~g~~~--~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQk 726 (1333)
.++|++|++..+..++.+|+.+.... .++...++++.+++. ...+.++.+||||||
T Consensus 77 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LS~G~~ 145 (255)
T cd03236 77 NYFTKLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELR-----------HVLDRNIDQLSGGEL 145 (255)
T ss_pred hhhHHhhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCc-----------hhhcCChhhCCHHHH
Confidence 25788888765555666666543211 123344444444432 233467789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEc
Q 000720 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQS 800 (1333)
Q Consensus 727 qRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~ 800 (1333)
||++||||++.+|+++||||||++||+.+.+.+.+.+.+...+++|+|++||+++.+.. ||+|++|+ |++.+.
T Consensus 146 qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~~ 219 (255)
T cd03236 146 QRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGAY 219 (255)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCCCcc
Confidence 99999999999999999999999999999887776443333357999999999999875 99999995 556543
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-28 Score=263.53 Aligned_cols=187 Identities=26% Similarity=0.333 Sum_probs=157.6
Q ss_pred CcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCeEEEEcCCC--CCCCCCHHHHhccCCc--
Q 000720 610 PTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSS--WIQTGTIRENILFGKD-- 684 (1333)
Q Consensus 610 ~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~iayv~Q~~--~i~~~Tv~enI~~g~~-- 684 (1333)
....|+| ||++++||.++|+|+|||||||||+.|.|.++|++|++ .++|++++...-. .-++.|.||||.+-..
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v-~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~ 117 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKV-KVTGKVAPLIELGAGFDPELTGRENIYLRGLIL 117 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceE-EEcceEehhhhcccCCCcccchHHHHHHHHHHh
Confidence 3468999 99999999999999999999999999999999999997 9999998766543 3456799999986322
Q ss_pred -----CCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH
Q 000720 685 -----MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHL 759 (1333)
Q Consensus 685 -----~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l 759 (1333)
.-+++++++++...|.+ .++.+..++|-|++.|++.|-|...+|||||+||.++..|+.-.++-
T Consensus 118 G~~~~ei~~~~~eIieFaELG~-----------fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~ 186 (249)
T COG1134 118 GLTRKEIDEKVDEIIEFAELGD-----------FIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKC 186 (249)
T ss_pred CccHHHHHHHHHHHHHHHHHHH-----------HhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHH
Confidence 22345666666554432 23367789999999999999999999999999999999999888777
Q ss_pred HHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChHHHHh
Q 000720 760 FKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 760 ~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
.+.+.+...+++|+|+||||++.++. ||+++.|++|+|...|++++..+
T Consensus 187 ~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~ 236 (249)
T COG1134 187 LERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP 236 (249)
T ss_pred HHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHH
Confidence 66654544778999999999999865 99999999999999999999876
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-28 Score=260.30 Aligned_cols=150 Identities=27% Similarity=0.392 Sum_probs=118.7
Q ss_pred CcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCe--------EEEEcCCCCCCCCCHHHHhc
Q 000720 610 PTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------KAYVPQSSWIQTGTIRENIL 680 (1333)
Q Consensus 610 ~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~--------iayv~Q~~~i~~~Tv~enI~ 680 (1333)
..+.+++ ||++++|++++|+|||||||||||++|++ .+|++ .+.+. ++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~~G~v-~~~~~~~~~~~~~~~~~~q-------------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----ASGKA-RLISFLPKFSRNKLIFIDQ-------------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----cCCcE-EECCcccccccccEEEEhH--------------
Confidence 4678999 99999999999999999999999999974 57775 55443 334333
Q ss_pred cCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccC--CCEEEEeCCCCCCCHHHHHH
Q 000720 681 FGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSN--SDVYIFDDPFSAVDAHTGTH 758 (1333)
Q Consensus 681 ~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~--~~illLDEP~saLD~~~~~~ 758 (1333)
.+.++..++.. . ..++++.+||||||||++||||++.+ |+++||||||++||++..+.
T Consensus 68 ----------~~~l~~~~L~~---------~-~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~ 127 (176)
T cd03238 68 ----------LQFLIDVGLGY---------L-TLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQ 127 (176)
T ss_pred ----------HHHHHHcCCCc---------c-ccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHH
Confidence 22333333321 1 24567889999999999999999999 99999999999999999888
Q ss_pred HHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEE
Q 000720 759 LFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIE 798 (1333)
Q Consensus 759 l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~ 798 (1333)
+.+.+.+...+++|||++||+++++..||++++|++|+..
T Consensus 128 l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~~~ 167 (176)
T cd03238 128 LLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGSGK 167 (176)
T ss_pred HHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCCCC
Confidence 7765433333689999999999998889999999876543
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.7e-29 Score=257.53 Aligned_cols=187 Identities=26% Similarity=0.332 Sum_probs=152.5
Q ss_pred CCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCe-------------EEEEcCCCC---CC
Q 000720 609 KPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-------------KAYVPQSSW---IQ 671 (1333)
Q Consensus 609 ~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~-------------iayv~Q~~~---i~ 671 (1333)
.+++.|.+ +++|++|+++.|+|.||||||||+++|+|.++|++|++ .++|. ++-|+|+|- -.
T Consensus 17 ~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I-~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~ 95 (263)
T COG1101 17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQI-LIDGVDVTKKSVAKRANLLARVFQDPLAGTAP 95 (263)
T ss_pred hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceE-EECceecccCCHHHHhhHHHHHhcchhhCCcc
Confidence 35678999 99999999999999999999999999999999999996 77763 477999985 45
Q ss_pred CCCHHHHhccCCcC------CH---HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEE
Q 000720 672 TGTIRENILFGKDM------RQ---SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVY 742 (1333)
Q Consensus 672 ~~Tv~enI~~g~~~------~~---~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~il 742 (1333)
+.||.||+...... .. .++.+ ...+.+..++.|.+...+.+..-|||||||-++|+.|..+.|+|+
T Consensus 96 ~lTieENl~la~~Rg~~rgl~~~ln~~~~~-----~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiL 170 (263)
T COG1101 96 ELTIEENLALAESRGKKRGLSSALNERRRS-----SFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKIL 170 (263)
T ss_pred cccHHHHHHHHHhcCcccccchhhhHHHHH-----HHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEE
Confidence 78999999864211 11 11111 112335566777777788889999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhh-hhcCCEEEEEeCCeEEEcc
Q 000720 743 IFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEF-LDAADLVLVMKDGKIEQSG 801 (1333)
Q Consensus 743 lLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~-l~~aD~i~vl~~G~i~~~g 801 (1333)
+|||-|+||||.++..+++.--+-..+ +-|.++|||+++. +.+-+|.++|++|+|+.+-
T Consensus 171 LLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv 231 (263)
T COG1101 171 LLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDV 231 (263)
T ss_pred EecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEc
Confidence 999999999999999888754444444 4699999999986 5789999999999998653
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-28 Score=332.39 Aligned_cols=204 Identities=22% Similarity=0.347 Sum_probs=164.7
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCc---CCCCcEEEECC------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP---RISGAAIKVHG------ 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~---~~~G~~i~~~g------ 659 (1333)
.++++|++++++.+. ..+.+|+| |+++++||+++|+|||||||||||++|+|..+ +++|++ .++|
T Consensus 759 ~l~~~nl~~~~~~~~----~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I-~i~G~~~~~~ 833 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKK----EKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDR-LVNGRPLDSS 833 (1394)
T ss_pred eEEEEeeEEEecCCC----CCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEE-EECCEECChh
Confidence 478999999986431 23578999 99999999999999999999999999999987 677986 7766
Q ss_pred ---eEEEEcCCCC-CCCCCHHHHhccCCc------CCH-H---HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHH
Q 000720 660 ---KKAYVPQSSW-IQTGTIRENILFGKD------MRQ-S---FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1333)
Q Consensus 660 ---~iayv~Q~~~-i~~~Tv~enI~~g~~------~~~-~---~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQ 725 (1333)
.+|||+|++. ++..||+||+.|+.. ..+ + +.+++++..++. +..++.+|+.+.+|||||
T Consensus 834 ~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~-------~~~d~~v~~~~~~LSgGq 906 (1394)
T TIGR00956 834 FQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEME-------SYADAVVGVPGEGLNVEQ 906 (1394)
T ss_pred hhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCCh-------hhCCCeeCCCCCCCCHHH
Confidence 3699999864 567899999998531 111 1 223444444432 223567788788999999
Q ss_pred HHHHHHHHHHccCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhh--hcCCEEEEEeCC-eEEEcc
Q 000720 726 KQRIQLARAVYSNSD-VYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFL--DAADLVLVMKDG-KIEQSG 801 (1333)
Q Consensus 726 kqRv~LARAl~~~~~-illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l--~~aD~i~vl~~G-~i~~~g 801 (1333)
|||++|||||+.+|+ +++|||||||||+.++..+.+.+.+...+|+|||++|||++.. +.+|++++|++| ++++.|
T Consensus 907 rqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G 986 (1394)
T TIGR00956 907 RKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFG 986 (1394)
T ss_pred hhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEEC
Confidence 999999999999997 9999999999999998888775544445789999999999863 569999999987 999999
Q ss_pred ChHH
Q 000720 802 KYED 805 (1333)
Q Consensus 802 ~~~~ 805 (1333)
+.++
T Consensus 987 ~~~~ 990 (1394)
T TIGR00956 987 DLGE 990 (1394)
T ss_pred Cccc
Confidence 8754
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-25 Score=247.42 Aligned_cols=366 Identities=20% Similarity=0.242 Sum_probs=263.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCcchhHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 000720 940 SSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSII 1019 (1333)
Q Consensus 940 ~~i~~~~~~~~~~~~~~~~s~~L~~~ll~~il~ap~~fFd~tp~GrIlnRfs~Di~~vd~~l~~~l~~~~~~~~~~l~~i 1019 (1333)
-.+...+.......+|.+...++|.++.++++.+|+.-+++-.+||++.++++|+.+|. .--..+..+.++.+-.++++
T Consensus 61 f~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~IS-f~~s~lp~~~qa~il~l~s~ 139 (546)
T COG4615 61 FMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNIS-FAFSRLPELVQAIILTLGSA 139 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhccccccee-ehHhhhHHHHHHHHHHHHHH
Confidence 33344455666788899999999999999999999999999999999999999999998 33445667888888899999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhchHHHHHHHHhcchHHHHhcccHHHHHHH--HHHHH-
Q 000720 1020 ILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLR--SHSLI- 1096 (1333)
Q Consensus 1020 vv~~~~~~~l~lv~ipl~~~~~~~~~~y~~~srel~rl~~~~~spl~~~~~Etl~G~~tIRaf~~e~~f~~~--~~~~~- 1096 (1333)
+.+++.+++++++.+..+++.++.+.+.++..-+-.+...+....+.++++-.++|-+..+..+...+.... +...-
T Consensus 140 aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~ 219 (546)
T COG4615 140 AYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQ 219 (546)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchH
Confidence 999999999999888887777777766666555555666667778999999999999988776644333322 21111
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 000720 1097 ---DDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYGL---NLNVLQAWVIWNLCNVE 1170 (1333)
Q Consensus 1097 ---d~~~~~~~~~~~~~~wl~~rl~ll~~~~~~~~~~~~~~~~~~~~~~g~~gl~l~y~l---~l~~~l~~~v~~~~~le 1170 (1333)
++..+.......+..|-...+-.+.++++... ...+ ..... .++++.+ -+-.++..++..+..+-
T Consensus 220 ~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~la------l~~~-w~st~--~a~tivlvlLflr~pL~s~vgilP~l~ 290 (546)
T COG4615 220 EYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLA------LSLG-WASTN--VAATIVLVLLFLRTPLLSAVGILPTLL 290 (546)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH------Hhhc-cchhh--HHHHHHHHHHHHhhHHHHHHhhhhHHH
Confidence 11111222222344454433222222111111 1011 11111 2223333 33455666777777788
Q ss_pred HHhhHHHHHHHhhcCCCCCCcccCCCCCCCCCCCcccEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHH
Q 000720 1171 NKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKST 1250 (1333)
Q Consensus 1171 ~~~~SveRI~~~~~~p~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKST 1250 (1333)
..-++..||.++..-|..+ ..+...+.|+|. .||++||.|+|.++. .-+.-||++|+.||.|=|+|.+||||||
T Consensus 291 ~AqvA~~kiakle~~~~~a--~~~~~q~~p~~~---~lelrnvrfay~~~~-FhvgPiNl~ikrGelvFliG~NGsGKST 364 (546)
T COG4615 291 TAQVAFNKIAKLELAPYKA--DFPRPQAFPDWK---TLELRNVRFAYQDNA-FHVGPINLTIKRGELVFLIGGNGSGKST 364 (546)
T ss_pred HHHHHHHHHHHhhcCCccc--cCCCCCcCCccc---ceeeeeeeeccCccc-ceecceeeEEecCcEEEEECCCCCcHHH
Confidence 8889999999876532211 112222333454 799999999998764 3577899999999999999999999999
Q ss_pred HHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeEecccccccccchhhhcCCCCCCCHHHHHHHHHhCCCCc
Q 000720 1251 LIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVKISKLLTH 1325 (1333)
Q Consensus 1251 Li~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isiVpQdp~LF~GTIR~NLdp~~~~sDeeI~~aL~~~~L~~ 1325 (1333)
++++|.|+|.|++|+|++||.+++.=++++.|+-+|-|.-|-+||+.++ -|-+..+.+.|..-|++-.|..
T Consensus 365 ~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll----~~e~~as~q~i~~~LqrLel~~ 435 (546)
T COG4615 365 LAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL----GPEGKASPQLIEKWLQRLELAH 435 (546)
T ss_pred HHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh----CCccCCChHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999875 3434477777777776655543
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-27 Score=248.97 Aligned_cols=141 Identities=40% Similarity=0.607 Sum_probs=120.6
Q ss_pred EeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCe-----------
Q 000720 593 IEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK----------- 660 (1333)
Q Consensus 593 i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~----------- 660 (1333)
++|.+|+|+.. +.+++ |+++++|++++|+|+||||||||+++|.|+++|.+|++ .+++.
T Consensus 2 ~~~~~~~~~~~--------~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i-~~~~~~~~~~~~~~~~ 72 (157)
T cd00267 2 IENLSFRYGGR--------TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEI-LIDGKDIAKLPLEELR 72 (157)
T ss_pred eEEEEEEeCCe--------eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEE-EECCEEcccCCHHHHH
Confidence 67888988642 57899 99999999999999999999999999999999999986 66653
Q ss_pred --EEEEcCCCCCCCCCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccC
Q 000720 661 --KAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSN 738 (1333)
Q Consensus 661 --iayv~Q~~~i~~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~ 738 (1333)
++|++| ||||||||++||||++.+
T Consensus 73 ~~i~~~~q------------------------------------------------------lS~G~~~r~~l~~~l~~~ 98 (157)
T cd00267 73 RRIGYVPQ------------------------------------------------------LSGGQRQRVALARALLLN 98 (157)
T ss_pred hceEEEee------------------------------------------------------CCHHHHHHHHHHHHHhcC
Confidence 222222 999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCe
Q 000720 739 SDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGK 796 (1333)
Q Consensus 739 ~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~ 796 (1333)
|++++|||||++||+.+...+.+.+.....+++|++++||++++++. ||++++|++|+
T Consensus 99 ~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 99 PDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 99999999999999999887766443333346899999999999877 79999999875
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.2e-27 Score=315.34 Aligned_cols=208 Identities=25% Similarity=0.396 Sum_probs=160.1
Q ss_pred cEEEeeeEEEcCCcccc-----cCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcC--CCCcEEEECC--
Q 000720 590 AIDIEAGEYAWDAREEN-----FKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR--ISGAAIKVHG-- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~-----~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~--~~G~~i~~~g-- 659 (1333)
.+.++|++++-+...+. ......+|+| |+++++|++++|+|||||||||||++|+|..++ .+|++ .++|
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I-~inG~~ 945 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDI-RISGFP 945 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceE-EECCcc
Confidence 57888888877532110 0123468999 999999999999999999999999999998763 67875 6665
Q ss_pred --------eEEEEcCCCC-CCCCCHHHHhccCCc------CCH-H---HHHHHHHHcccchHHHhhcCCCccccCCCC-C
Q 000720 660 --------KKAYVPQSSW-IQTGTIRENILFGKD------MRQ-S---FYEEVLEGCALNQDIEMWADGDLSVVGERG-I 719 (1333)
Q Consensus 660 --------~iayv~Q~~~-i~~~Tv~enI~~g~~------~~~-~---~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g-~ 719 (1333)
.+|||+|++. .++.||+||+.|... .+. + +.+++++..++.+ -.++.+|..+ .
T Consensus 946 ~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~-------~~~~~vg~~~~~ 1018 (1470)
T PLN03140 946 KKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDN-------LKDAIVGLPGVT 1018 (1470)
T ss_pred CChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChh-------HhCCccCCCCCC
Confidence 3699999975 456799999987521 121 1 2344555554432 1234555443 6
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhh--hhcCCEEEEEeC-Ce
Q 000720 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEF--LDAADLVLVMKD-GK 796 (1333)
Q Consensus 720 ~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~--l~~aD~i~vl~~-G~ 796 (1333)
.||||||||++|||||+.+|++++|||||||||++++..+.+.+.+...+|+|||++|||++. .+.+|++++|++ |+
T Consensus 1019 ~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~ 1098 (1470)
T PLN03140 1019 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQ 1098 (1470)
T ss_pred CcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCE
Confidence 899999999999999999999999999999999999988887655544568999999999984 466999999986 89
Q ss_pred EEEccChHH
Q 000720 797 IEQSGKYED 805 (1333)
Q Consensus 797 i~~~g~~~~ 805 (1333)
+++.|+..+
T Consensus 1099 ~v~~G~~~~ 1107 (1470)
T PLN03140 1099 VIYSGPLGR 1107 (1470)
T ss_pred EEEECCccc
Confidence 999998653
|
|
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-27 Score=230.40 Aligned_cols=182 Identities=23% Similarity=0.354 Sum_probs=139.7
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCC---CCcEEEECC-------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI---SGAAIKVHG------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~---~G~~i~~~g------- 659 (1333)
..++|++..-+. ...|.+ |++|.+||++-+.||+|||||||+.-+.|.+.+. +|++ .+++
T Consensus 3 l~l~nvsl~l~g--------~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~-~l~~~~l~~lP 73 (213)
T COG4136 3 LCLKNVSLRLPG--------SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGEL-WLNEQRLDMLP 73 (213)
T ss_pred eeeeeeeecCCC--------ceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEE-EECCeeccccc
Confidence 345677655443 357888 9999999999999999999999999999988753 5654 5543
Q ss_pred ----eEEEEcCCCCCCC-CCHHHHhccCCcCCH---HH---HHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHH
Q 000720 660 ----KKAYVPQSSWIQT-GTIRENILFGKDMRQ---SF---YEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728 (1333)
Q Consensus 660 ----~iayv~Q~~~i~~-~Tv~enI~~g~~~~~---~~---~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqR 728 (1333)
++|..+|++|+|. .+|.+|++|..+.+- .+ .+..++..+|...+ .+.+.+||||||.|
T Consensus 74 a~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f-----------~~dP~tlSGGQrAR 142 (213)
T COG4136 74 AAQRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAF-----------HQDPATLSGGQRAR 142 (213)
T ss_pred hhhhheeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhh-----------hcChhhcCcchHHH
Confidence 5799999999875 599999999765431 11 12233444443322 34567999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhhcCCEEEEE
Q 000720 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLVM 792 (1333)
Q Consensus 729 v~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~~aD~i~vl 792 (1333)
|+|-|+|...|+.++||||||.||..-+.+.-+-++.... .|..+|+||||.+.++.-.||+-|
T Consensus 143 vaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVie~ 207 (213)
T COG4136 143 VALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVIEM 207 (213)
T ss_pred HHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeeeee
Confidence 9999999999999999999999999887665554554443 478999999999988866666655
|
|
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.6e-27 Score=239.53 Aligned_cols=200 Identities=21% Similarity=0.336 Sum_probs=161.2
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCe-------
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK------- 660 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~------- 660 (1333)
...+++|++.+++.= ..+++ +|++.+||+-+|+||||+||||++..|.|..+|+.|++ .++|.
T Consensus 4 ~iL~~~~vsVsF~GF--------~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v-~f~g~~dl~~~~ 74 (249)
T COG4674 4 IILYLDGVSVSFGGF--------KALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEV-LFDGDTDLTKLP 74 (249)
T ss_pred ceEEEeceEEEEcce--------eeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceE-EEcCchhhccCC
Confidence 357888999888642 46888 99999999999999999999999999999999999996 66662
Q ss_pred --------EEEEcCCCCCC-CCCHHHHhccCCcCCHH---------------HHHHHHHHcccchHHHhhcCCCccccCC
Q 000720 661 --------KAYVPQSSWIQ-TGTIRENILFGKDMRQS---------------FYEEVLEGCALNQDIEMWADGDLSVVGE 716 (1333)
Q Consensus 661 --------iayv~Q~~~i~-~~Tv~enI~~g~~~~~~---------------~~~~v~~~~~l~~d~~~~~~g~~t~ig~ 716 (1333)
||--+|.|.+| +.||+||+......++. +.++++...+|. ...+.
T Consensus 75 e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~-----------~~~~~ 143 (249)
T COG4674 75 EHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLG-----------DERDR 143 (249)
T ss_pred HHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccc-----------hhhhh
Confidence 57889999876 56999999765433322 333333333332 22334
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCC
Q 000720 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDG 795 (1333)
Q Consensus 717 ~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G 795 (1333)
....||.||||++.|+.-+.++|+++|||||.+|+-.....+. .++++.+.++++|++|.|||+|+.. ||+|-||+.|
T Consensus 144 ~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~t-aeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G 222 (249)
T COG4674 144 LAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKT-AELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEG 222 (249)
T ss_pred hhhhhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHH-HHHHHHHhcCceEEEEeccHHHHHHhhheeEEEecc
Confidence 5679999999999999999999999999999999955443433 3466777788999999999999975 9999999999
Q ss_pred eEEEccChHHHHhh
Q 000720 796 KIEQSGKYEDLIAD 809 (1333)
Q Consensus 796 ~i~~~g~~~~l~~~ 809 (1333)
.+..+|+.+++.++
T Consensus 223 ~VL~EGsld~v~~d 236 (249)
T COG4674 223 SVLAEGSLDEVQND 236 (249)
T ss_pred ceeecccHHHhhcC
Confidence 99999999998763
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-26 Score=232.41 Aligned_cols=192 Identities=26% Similarity=0.350 Sum_probs=149.2
Q ss_pred ccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC-------------eEEEEcCCCC-CCCC--CHH
Q 000720 614 LTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------------KKAYVPQSSW-IQTG--TIR 676 (1333)
Q Consensus 614 L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g-------------~iayv~Q~~~-i~~~--Tv~ 676 (1333)
.+. +|++++|+..||+|.||||||||.++|.|.++|++|++ .+++ .|-.++|+|. -+|. .|-
T Consensus 29 V~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~i-l~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iG 107 (267)
T COG4167 29 VKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEI-LINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIG 107 (267)
T ss_pred ccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceE-EECCccccccchHhhhhheeeeecCCccccChhhhhh
Confidence 445 89999999999999999999999999999999999996 7765 3678999984 2332 222
Q ss_pred HHhccC----CcCCH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCC
Q 000720 677 ENILFG----KDMRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPF 748 (1333)
Q Consensus 677 enI~~g----~~~~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~ 748 (1333)
.-+.+. .++++ ++..+.++..+|-.|-. .-.+..||-||||||+|||||.-+|+|++.||.+
T Consensus 108 qiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdha----------n~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl 177 (267)
T COG4167 108 QILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHA----------NYYPHMLAPGQKQRVALARALILRPKIIIADEAL 177 (267)
T ss_pred hHhcchhhhcccCChHHHHHHHHHHHHHhccCcccc----------ccchhhcCchhHHHHHHHHHHhcCCcEEEehhhh
Confidence 222221 12222 23333445555544322 2356789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH-hCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChHHHHhhcchHHHH
Q 000720 749 SAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIADQNSELVR 816 (1333)
Q Consensus 749 saLD~~~~~~l~~~~~~~~-~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~~l~~~~~~~~~~ 816 (1333)
++||...+.++.+..+..- +.|..-|+|+.++..+++ +|.|+||++|++++.|+..+++.++..+..+
T Consensus 178 ~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~a~P~~~~Tk 247 (267)
T COG4167 178 ASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLASPLHELTK 247 (267)
T ss_pred hhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhhcCCccHHHH
Confidence 9999999999887555432 347899999999999987 9999999999999999999999866555443
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-25 Score=273.26 Aligned_cols=200 Identities=28% Similarity=0.432 Sum_probs=162.2
Q ss_pred CCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--eEEE
Q 000720 587 SDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAY 663 (1333)
Q Consensus 587 ~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--~iay 663 (1333)
....++++|++++|+.+ .+++++ ||.|.+|+.+||+||||+||||||+.|+|...|.+|.+ .... ++||
T Consensus 318 g~~vl~~~~~~~~y~~~-------~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v-~~g~~v~igy 389 (530)
T COG0488 318 GKLVLEFENVSKGYDGG-------RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV-KVGETVKIGY 389 (530)
T ss_pred CCeeEEEeccccccCCC-------ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceE-EeCCceEEEE
Confidence 35679999999999753 578899 99999999999999999999999999999999999986 5543 5899
Q ss_pred EcCCC--CCCCCCHHHHhccCCcC-CHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCC
Q 000720 664 VPQSS--WIQTGTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSD 740 (1333)
Q Consensus 664 v~Q~~--~i~~~Tv~enI~~g~~~-~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ 740 (1333)
.+|+. +..+.|+.|++.-..+. .+...+..+..+.+..+.. ..+...||||||.|+.||+.+.++|.
T Consensus 390 f~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~----------~~~v~~LSGGEk~Rl~La~ll~~~pN 459 (530)
T COG0488 390 FDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQ----------EKPVGVLSGGEKARLLLAKLLLQPPN 459 (530)
T ss_pred EEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHH----------hCchhhcCHhHHHHHHHHHHhccCCC
Confidence 99985 34566999999765532 2455556666665544322 35678999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEE-ccChHHHHh
Q 000720 741 VYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ-SGKYEDLIA 808 (1333)
Q Consensus 741 illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~-~g~~~~l~~ 808 (1333)
+|||||||++||.++.+.+-+ .+.. -..|||+||||.+|++. |++++.+++ ++.. .|+|+++.+
T Consensus 460 vLiLDEPTNhLDi~s~~aLe~-aL~~--f~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~ 525 (530)
T COG0488 460 LLLLDEPTNHLDIESLEALEE-ALLD--FEGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLE 525 (530)
T ss_pred EEEEcCCCccCCHHHHHHHHH-HHHh--CCCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHH
Confidence 999999999999998665533 2222 25799999999999987 999999998 6654 489988865
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.4e-26 Score=251.07 Aligned_cols=179 Identities=24% Similarity=0.275 Sum_probs=118.9
Q ss_pred CcccccC-CeEeeCCcEEEEECCCCCChhHHH-HHHhC--C------------------CcCCCCcEEEECC-eEEEEcC
Q 000720 610 PTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLL-SSILG--E------------------IPRISGAAIKVHG-KKAYVPQ 666 (1333)
Q Consensus 610 ~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl-~~ilG--~------------------~~~~~G~~i~~~g-~iayv~Q 666 (1333)
....+++ ||++++||+++|+|+||||||||+ ..|.+ . ..|..+. ..+ ..++..|
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 83 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDS---IEGLSPAIAID 83 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCcccccc---ccCCCceEEec
Confidence 3568899 999999999999999999999996 33321 1 0111110 111 1233444
Q ss_pred CCC-CC--CCCHH---HHhcc-CCcCCH---HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHc
Q 000720 667 SSW-IQ--TGTIR---ENILF-GKDMRQ---SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY 736 (1333)
Q Consensus 667 ~~~-i~--~~Tv~---enI~~-g~~~~~---~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~ 736 (1333)
++. .. ..++. +...+ ...+.. ....+.++.+++. + ...+.++.+||||||||++||||++
T Consensus 84 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~---------~-~~~~~~~~~LSgG~~qrv~laral~ 153 (226)
T cd03270 84 QKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGLG---------Y-LTLSRSAPTLSGGEAQRIRLATQIG 153 (226)
T ss_pred CCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHCCCC---------c-ccccCccCcCCHHHHHHHHHHHHHH
Confidence 432 11 11322 21111 000000 0001122222211 1 1245788999999999999999999
Q ss_pred cCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEE------eCCeEEEcc
Q 000720 737 SNS--DVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVM------KDGKIEQSG 801 (1333)
Q Consensus 737 ~~~--~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl------~~G~i~~~g 801 (1333)
.+| +++||||||++||+.+.+.+.+.+.+...+|.|+|++||+++++..||++++| ++|+|+++|
T Consensus 154 ~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 154 SGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred hCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 998 59999999999999998888876544344689999999999998889999999 999999876
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.8e-26 Score=224.98 Aligned_cols=217 Identities=23% Similarity=0.348 Sum_probs=160.6
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
-.++++.+..|... .--++ +|++.|||..+|+|++||||||||+||.|-+.|+.|++....+
T Consensus 6 LL~V~~lsk~Yg~~--------~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~ 77 (258)
T COG4107 6 LLSVSGLSKLYGPG--------KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYT 77 (258)
T ss_pred ceeehhhhhhhCCC--------cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhh
Confidence 45667777777644 33467 9999999999999999999999999999999999998743321
Q ss_pred ------------eEEEEcCCCC--C-CCCCHHHHhccCC-cCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCCh
Q 000720 660 ------------KKAYVPQSSW--I-QTGTIRENILFGK-DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1333)
Q Consensus 660 ------------~iayv~Q~~~--i-~~~Tv~enI~~g~-~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSG 723 (1333)
.-|+|-|+|- + ..-+.--||---. ..-...|.++-. .+. +.++. -+=+.+.+++.+.++||
T Consensus 78 msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~-~a~-~WL~~-VEI~~~RiDD~PrtFSG 154 (258)
T COG4107 78 MSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRA-EAQ-DWLEE-VEIDLDRIDDLPRTFSG 154 (258)
T ss_pred hchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHH-HHH-HHHHh-cccCcccccCcccccch
Confidence 2489999984 2 1112233331000 011123333221 111 12222 22345678889999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCeEEEecCchhhhhc-CCEEEEEeCCeEEEc
Q 000720 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQS 800 (1333)
Q Consensus 724 GQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~--~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~ 800 (1333)
|++||+.|||-|...|+++++||||.|||..++.++.+ +++++-. +-++|+||||+..... +|+.++|++|+++++
T Consensus 155 GMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLD-llrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~ 233 (258)
T COG4107 155 GMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLD-LLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVES 233 (258)
T ss_pred HHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHH-HHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEecc
Confidence 99999999999999999999999999999999998886 5566543 6799999999999876 999999999999999
Q ss_pred cChHHHHhhcchHHHHHH
Q 000720 801 GKYEDLIADQNSELVRQM 818 (1333)
Q Consensus 801 g~~~~l~~~~~~~~~~~~ 818 (1333)
|-.+.++.++...+.+++
T Consensus 234 GLTDrvLDDP~hPYTQLL 251 (258)
T COG4107 234 GLTDRVLDDPHHPYTQLL 251 (258)
T ss_pred ccccccccCCCCchHHHH
Confidence 999988886666555543
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-25 Score=255.90 Aligned_cols=196 Identities=23% Similarity=0.419 Sum_probs=133.7
Q ss_pred CccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhC---CCcCCCCcEEEECCeEEE
Q 000720 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILG---EIPRISGAAIKVHGKKAY 663 (1333)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG---~~~~~~G~~i~~~g~iay 663 (1333)
...|.+.|.+.+|.. +..|.+ ++++..|-.+++||+||+||||||++|.. ..-|+.-++ .|..-.
T Consensus 78 ~~Di~~~~fdLa~G~--------k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~---~g~~t~ 146 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYGG--------KILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEV---RGDDTE 146 (582)
T ss_pred ccceeeeeeeeeecc--------hhhhcCCceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCchhhe---eccchH
Confidence 346777777777754 467888 99999999999999999999999999997 111211111 111111
Q ss_pred EcCCCCCCCCCHHHHhccCC-c-----CCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHcc
Q 000720 664 VPQSSWIQTGTIRENILFGK-D-----MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS 737 (1333)
Q Consensus 664 v~Q~~~i~~~Tv~enI~~g~-~-----~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~ 737 (1333)
.-|+ .+...+-+.-.+.-. + -..+.|.+++...+..+++...| ..+||||-|.|++||||+..
T Consensus 147 ~~~~-~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~p----------t~slSGGWrMrlaLARAlf~ 215 (582)
T KOG0062|consen 147 ALQS-VLESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQP----------TKSLSGGWRMRLALARALFA 215 (582)
T ss_pred HHhh-hhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhcc----------ccccCcchhhHHHHHHHHhc
Confidence 1111 122233333332211 1 11233444566666666665544 46899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeE-EEccChHHHHh
Q 000720 738 NSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKI-EQSGKYEDLIA 808 (1333)
Q Consensus 738 ~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i-~~~g~~~~l~~ 808 (1333)
+||||||||||+.||.+.-.++-+ .+.. ...|+|+|+||-.|+.. |..|+.+++-++ .+.|+++++.+
T Consensus 216 ~pDlLLLDEPTNhLDv~av~WLe~-yL~t--~~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk 285 (582)
T KOG0062|consen 216 KPDLLLLDEPTNHLDVVAVAWLEN-YLQT--WKITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVK 285 (582)
T ss_pred CCCEEeecCCcccchhHHHHHHHH-HHhh--CCceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHH
Confidence 999999999999999987665532 2222 24799999999999987 888998888766 36677766654
|
|
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-25 Score=239.90 Aligned_cols=188 Identities=26% Similarity=0.309 Sum_probs=138.9
Q ss_pred cccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCeE------------EEEc-C---CCCCCCC
Q 000720 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK------------AYVP-Q---SSWIQTG 673 (1333)
Q Consensus 611 ~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~i------------ayv~-Q---~~~i~~~ 673 (1333)
.+..+| ||+|++|++++++|+|||||||+||+|.|.+.|++|.+ .+.|.+ ++|. | --|-.+
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v-~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp- 114 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKV-RVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLP- 114 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeE-EecCcCcchhHHHHHHHHHHHhhhhheeeeech-
Confidence 346788 99999999999999999999999999999999999986 887743 3333 2 123111
Q ss_pred CHHHHhccC---CcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCC
Q 000720 674 TIRENILFG---KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSA 750 (1333)
Q Consensus 674 Tv~enI~~g---~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~sa 750 (1333)
+.|-+... .+.....|++-.+..- +.+ +....+..+...||-|||.|+.||.||.++|+|++|||||-|
T Consensus 115 -~~ds~~v~~~Iy~Ipd~~F~~r~~~l~-----eiL--dl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvg 186 (325)
T COG4586 115 -ALDSLEVLKLIYEIPDDEFAERLDFLT-----EIL--DLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVG 186 (325)
T ss_pred -hhhhHHHHHHHHhCCHHHHHHHHHHHH-----HHh--cchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccC
Confidence 22222111 1222333333332111 111 112234467789999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHH-HhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChHHHHh
Q 000720 751 VDAHTGTHLFKQCLMG-LLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 751 LD~~~~~~l~~~~~~~-~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
||..++..+.+-+... ..++.||+++||+++-+.. ||||++|+.|+++++|+.+++.+
T Consensus 187 LDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~ 246 (325)
T COG4586 187 LDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQE 246 (325)
T ss_pred cchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHH
Confidence 9999888776543322 2357899999999988765 99999999999999999998876
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-23 Score=263.00 Aligned_cols=197 Identities=23% Similarity=0.312 Sum_probs=147.9
Q ss_pred cccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCC---CCcEEEEC----------CeEEEEcCCC-CCCCCCH
Q 000720 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI---SGAAIKVH----------GKKAYVPQSS-WIQTGTI 675 (1333)
Q Consensus 611 ~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~---~G~~i~~~----------g~iayv~Q~~-~i~~~Tv 675 (1333)
...++| +.-+++|+.+.+.||.||||||||+++.|..+.. .|++ ..+ +.++|++|+. .+...||
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~i-sy~G~~~~e~~~~~~~aY~~e~DvH~p~lTV 206 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEI-TYNGHDLKEFVPKKTVAYNSEQDVHFPELTV 206 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCce-eECCCcccccccCceEEeccccccccceeEE
Confidence 357899 9999999999999999999999999999987632 3333 333 4579999975 5778999
Q ss_pred HHHhccCCc--CCHHHHHHHHHHccc--chH----HHhhcCCCccccCCC-CCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 000720 676 RENILFGKD--MRQSFYEEVLEGCAL--NQD----IEMWADGDLSVVGER-GINLSGGQKQRIQLARAVYSNSDVYIFDD 746 (1333)
Q Consensus 676 ~enI~~g~~--~~~~~~~~v~~~~~l--~~d----~~~~~~g~~t~ig~~-g~~LSGGQkqRv~LARAl~~~~~illLDE 746 (1333)
||-+.|... ....+|+++.+...+ ..| +-.+.+..+|.+|.. ..-.|||||+||++|-++..+++++..||
T Consensus 207 reTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De 286 (1391)
T KOG0065|consen 207 RETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDE 286 (1391)
T ss_pred eehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeec
Confidence 999998532 111122211111000 011 112344556778754 46789999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHH-hCCCeEEEecCchhh--hhcCCEEEEEeCCeEEEccChHHHHh
Q 000720 747 PFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEF--LDAADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 747 P~saLD~~~~~~l~~~~~~~~-~~~~TvIlvtH~~~~--l~~aD~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
++.|||..++-++.+.+.+.. .-+.|.++.-||... .+..|.|++|.+|++++.|+.++.+.
T Consensus 287 ~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~ 351 (1391)
T KOG0065|consen 287 ITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLP 351 (1391)
T ss_pred ccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHH
Confidence 999999999887776443332 347899999998743 56799999999999999999998875
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-25 Score=276.89 Aligned_cols=209 Identities=24% Similarity=0.396 Sum_probs=167.7
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcC---CCCcEEEECC-----
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR---ISGAAIKVHG----- 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~---~~G~~i~~~g----- 659 (1333)
..+.++|.+.+-+.... ..+..|++ +.++++||+.||+||+||||||||++|+|-.+. .+|.+ .++|
T Consensus 24 ~~~~~~~~~~~~~~~~~---~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~i-lvNG~~~~~ 99 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSK---KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEI-LLNGRPRDS 99 (613)
T ss_pred ceeEEEEEEEEecCCCC---ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEE-EECCccCch
Confidence 35677777766544311 24678999 999999999999999999999999999998874 67875 8887
Q ss_pred -----eEEEEcCCCC-CCCCCHHHHhccCCc------CC----HHHHHHHHHHcccchHHHhhcCCCccccCC-CCCCCC
Q 000720 660 -----KKAYVPQSSW-IQTGTIRENILFGKD------MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGE-RGINLS 722 (1333)
Q Consensus 660 -----~iayv~Q~~~-i~~~Tv~enI~~g~~------~~----~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~-~g~~LS 722 (1333)
..|||.|+.. +.+.||+|++.|... .. +++.+++++..+|. +-.+|.+|. ....+|
T Consensus 100 ~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~-------~~~~t~ig~~~~rgiS 172 (613)
T KOG0061|consen 100 RSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLE-------KCADTLIGNPGIRGLS 172 (613)
T ss_pred hhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCh-------hhccceecCCCCCccc
Confidence 2599999865 567899999987421 12 24455555555544 223466653 336899
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhh--hhcCCEEEEEeCCeEEEc
Q 000720 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEF--LDAADLVLVMKDGKIEQS 800 (1333)
Q Consensus 723 GGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~--l~~aD~i~vl~~G~i~~~ 800 (1333)
||||+||++|.-+..||.|++|||||||||..++.++.+.+.+...+|+|||++-||+.. .+..|++++|.+|++++.
T Consensus 173 GGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~ 252 (613)
T KOG0061|consen 173 GGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYS 252 (613)
T ss_pred cchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEe
Confidence 999999999999999999999999999999999999998766666779999999999964 467999999999999999
Q ss_pred cChHHHHh
Q 000720 801 GKYEDLIA 808 (1333)
Q Consensus 801 g~~~~l~~ 808 (1333)
|+++++.+
T Consensus 253 G~~~~~~~ 260 (613)
T KOG0061|consen 253 GSPRELLE 260 (613)
T ss_pred cCHHHHHH
Confidence 99987754
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.8e-24 Score=225.35 Aligned_cols=199 Identities=24% Similarity=0.300 Sum_probs=151.9
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCC--CcCCCCcEEEECCe-------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGE--IPRISGAAIKVHGK------- 660 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~--~~~~~G~~i~~~g~------- 660 (1333)
.+++|.+.+-+.+ +.+|++ ||+|++||+.+|.||||||||||.++|+|. +.+++|++ .++|.
T Consensus 4 L~I~dLhv~v~~~-------keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I-~~~GedI~~l~~ 75 (251)
T COG0396 4 LEIKDLHVEVEGK-------KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEI-LFDGEDILELSP 75 (251)
T ss_pred eEEeeeEEEecCc-------hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceE-EECCcccccCCH
Confidence 5788888766431 479999 999999999999999999999999999996 47899986 77763
Q ss_pred -------EEEEcCCCCCC-CCCHHHHhccCCcC-------CHHHHHH---HHHHcccchHHHhhcCCCccccCCCCCCCC
Q 000720 661 -------KAYVPQSSWIQ-TGTIRENILFGKDM-------RQSFYEE---VLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1333)
Q Consensus 661 -------iayv~Q~~~i~-~~Tv~enI~~g~~~-------~~~~~~~---v~~~~~l~~d~~~~~~g~~t~ig~~g~~LS 722 (1333)
+...+|.|.-. --|+.+.+.-+... ..+..++ .++...+++++. . ..+ ...+|
T Consensus 76 ~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l--~----R~v---N~GFS 146 (251)
T COG0396 76 DERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFL--E----RYV---NEGFS 146 (251)
T ss_pred hHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHh--h----ccc---CCCcC
Confidence 46888999744 44888887643111 1223333 333333333221 1 112 24699
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhhc--CCEEEEEeCCeEEE
Q 000720 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA--ADLVLVMKDGKIEQ 799 (1333)
Q Consensus 723 GGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~~--aD~i~vl~~G~i~~ 799 (1333)
||+|+|..|+.++..+|++.|||||=||||...-+.+- +.++.++ ++.+++++||.-+.+.+ .|++.+|-+|+|+.
T Consensus 147 GGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~-~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~ 225 (251)
T COG0396 147 GGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVA-EGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVK 225 (251)
T ss_pred cchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHH-HHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEe
Confidence 99999999999999999999999999999998765554 4555444 58999999999999887 59999999999999
Q ss_pred ccChHHHHh
Q 000720 800 SGKYEDLIA 808 (1333)
Q Consensus 800 ~g~~~~l~~ 808 (1333)
+|.+ ++..
T Consensus 226 sG~~-el~~ 233 (251)
T COG0396 226 SGDP-ELAE 233 (251)
T ss_pred cCCH-HHHH
Confidence 9998 6544
|
|
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-24 Score=243.49 Aligned_cols=181 Identities=26% Similarity=0.336 Sum_probs=125.4
Q ss_pred ccccC-CeEeeCCcEEEEECCCCCChhHHHHHHh--------CCC--cCCCCcEE---EECCeEEEEcCCCC--------
Q 000720 612 IKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSIL--------GEI--PRISGAAI---KVHGKKAYVPQSSW-------- 669 (1333)
Q Consensus 612 ~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~il--------G~~--~~~~G~~i---~~~g~iayv~Q~~~-------- 669 (1333)
..|+| +++|+.|++++|+|++|||||||++.++ +.. .|..++.+ .--+++-+|.|.|.
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 46889 9999999999999999999999999763 110 12211110 00112344444432
Q ss_pred ---------------------------------------CCCCCHHHHhccCCcCCH-HHHHHHHHHcccchHHHhhcCC
Q 000720 670 ---------------------------------------IQTGTIRENILFGKDMRQ-SFYEEVLEGCALNQDIEMWADG 709 (1333)
Q Consensus 670 ---------------------------------------i~~~Tv~enI~~g~~~~~-~~~~~v~~~~~l~~d~~~~~~g 709 (1333)
+.+.|+.||+.|.....+ .+..+.++.+ |
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~~L~~v-----------g 157 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQTLCDV-----------G 157 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHHHHHHc-----------C
Confidence 233445555443222111 1111111111 2
Q ss_pred Ccc-ccCCCCCCCChHHHHHHHHHHHHccC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc
Q 000720 710 DLS-VVGERGINLSGGQKQRIQLARAVYSN---SDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA 785 (1333)
Q Consensus 710 ~~t-~ig~~g~~LSGGQkqRv~LARAl~~~---~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~ 785 (1333)
... ..+++..+||||||||++||||+.++ |++++|||||++||++..+.+.+.+.+...+|.|+|++||+++++..
T Consensus 158 L~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~ 237 (261)
T cd03271 158 LGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKC 237 (261)
T ss_pred CchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 211 25678899999999999999999996 79999999999999999888876544334468999999999999988
Q ss_pred CCEEEEE------eCCeEEEccCh
Q 000720 786 ADLVLVM------KDGKIEQSGKY 803 (1333)
Q Consensus 786 aD~i~vl------~~G~i~~~g~~ 803 (1333)
||++++| ++|+|+++|++
T Consensus 238 aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 238 ADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred CCEEEEecCCcCCCCCEEEEeCCC
Confidence 9999999 89999999874
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-25 Score=252.27 Aligned_cols=123 Identities=38% Similarity=0.654 Sum_probs=115.6
Q ss_pred ccEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcC
Q 000720 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1285 (1333)
Q Consensus 1206 G~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~i 1285 (1333)
|+|+|+||+++|+++.+++|+|+||+|++||++|||||||||||||+++|+|+++ ++|+|.|||+|+.+++++++|++|
T Consensus 1 g~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred CeEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 6799999999997655679999999999999999999999999999999999998 789999999999999999999999
Q ss_pred eEecccccccccchhhhcCCCCCCCHHHHHHHHHhCCCCccccc
Q 000720 1286 SIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVKISKLLTHKSYQ 1329 (1333)
Q Consensus 1286 siVpQdp~LF~GTIR~NLdp~~~~sDeeI~~aL~~~~L~~~~~~ 1329 (1333)
++|||+|.+|++|+++||+|++..+++++|++++.++|.+...+
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~ 123 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQ 123 (275)
T ss_pred EEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHh
Confidence 99999999999999999999888899999999999999865443
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-24 Score=253.37 Aligned_cols=155 Identities=21% Similarity=0.339 Sum_probs=126.4
Q ss_pred HHhhHHHHHHHhhcCCCCCCcccC------CC---CCCCCCCCcccEEEEEEEEEECCCCCCccccceEEecCCcEEEEE
Q 000720 1171 NKMISVERILQFTNIPSEAPLVIK------NS---RPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVV 1241 (1333)
Q Consensus 1171 ~~~~SveRI~~~~~~p~E~~~~~~------~~---~~~~~wp~~G~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIV 1241 (1333)
+.+.+++|+.+|+..+.|.....+ +. ..+..||..|.|+|+|++++|+++.+++|+|+||+|++||++|||
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~Iv 114 (329)
T PRK14257 35 QKLNKYQRAFAWLKLPKQKKAELKQFLNKKKTQVDLLKEDFNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFI 114 (329)
T ss_pred hccccccchhhHHhcccccchhhhhcccccccccccccCCCCcCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEE
Confidence 456778888888777655432111 10 113469999999999999999755556999999999999999999
Q ss_pred CCCCccHHHHHHHHhcccC-----CCCCeEEEcCEeCC--CCChHHHhhcCeEecccccccccchhhhcC--C-CCCCCH
Q 000720 1242 GRTGSGKSTLIQALFRVVE-----PSGGRILIDGVDIS--MIGLQDLRSRLSIIPQDPMLFQGTVRTNLD--P-LEQHSD 1311 (1333)
Q Consensus 1242 GrTGSGKSTLi~lL~Rl~e-----p~~G~I~IDGvdI~--~i~l~~LRs~isiVpQdp~LF~GTIR~NLd--p-~~~~sD 1311 (1333)
||||||||||+++|+|+++ |++|+|.|||+||+ ++++.++|+++++|||+|.+|++|||+||+ | +..++|
T Consensus 115 G~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~ 194 (329)
T PRK14257 115 GPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGIND 194 (329)
T ss_pred CCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCCh
Confidence 9999999999999999997 57999999999997 567789999999999999999999999998 3 234566
Q ss_pred HH-----HHHHHHhCCCCc
Q 000720 1312 QE-----IWEVKISKLLTH 1325 (1333)
Q Consensus 1312 ee-----I~~aL~~~~L~~ 1325 (1333)
++ +.++|++|+|++
T Consensus 195 ~~~~~~~~~~~l~~~~L~~ 213 (329)
T PRK14257 195 RKILEKIVEKSLKSAALWD 213 (329)
T ss_pred HHHHHHHHHHHHHHcCCcc
Confidence 55 456789999853
|
|
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-24 Score=220.08 Aligned_cols=162 Identities=27% Similarity=0.361 Sum_probs=126.7
Q ss_pred CcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCe------------EEEEcCCCCC-CCCCH
Q 000720 610 PTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK------------KAYVPQSSWI-QTGTI 675 (1333)
Q Consensus 610 ~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~------------iayv~Q~~~i-~~~Tv 675 (1333)
+...+.+ +|++.+||.+.|.|||||||||||++|+|+++|.+|++ ..++. .-|+..+|-+ ...|+
T Consensus 14 e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v-~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa 92 (209)
T COG4133 14 ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEV-YWQGEPIQNVRESYHQALLYLGHQPGIKTELTA 92 (209)
T ss_pred cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeE-EecCCCCccchhhHHHHHHHhhccccccchhhH
Confidence 3467888 99999999999999999999999999999999999997 66532 2355555554 45799
Q ss_pred HHHhccCCcCC----HHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCC
Q 000720 676 RENILFGKDMR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAV 751 (1333)
Q Consensus 676 ~enI~~g~~~~----~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saL 751 (1333)
+||+.|-.++. .....++++..+|. +++ +.+..+||-|||+||+|||-..+.+++.|||||+++|
T Consensus 93 ~ENL~F~~~~~~~~~~~~i~~Al~~vgL~-g~~----------dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taL 161 (209)
T COG4133 93 LENLHFWQRFHGSGNAATIWEALAQVGLA-GLE----------DLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTAL 161 (209)
T ss_pred HHHHHHHHHHhCCCchhhHHHHHHHcCcc-ccc----------ccchhhcchhHHHHHHHHHHHcCCCCceeecCccccc
Confidence 99999865432 34445556655553 222 2456799999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHH-HhCCCeEEEecCchhhhh
Q 000720 752 DAHTGTHLFKQCLMG-LLSQKTVLYTTHQLEFLD 784 (1333)
Q Consensus 752 D~~~~~~l~~~~~~~-~~~~~TvIlvtH~~~~l~ 784 (1333)
|.+. ..++..++.. ..+|..||++||+.-.+.
T Consensus 162 Dk~g-~a~l~~l~~~H~~~GGiVllttHq~l~~~ 194 (209)
T COG4133 162 DKEG-VALLTALMAAHAAQGGIVLLTTHQPLPIA 194 (209)
T ss_pred CHHH-HHHHHHHHHHHhcCCCEEEEecCCccCCC
Confidence 9976 5566666654 456889999999865443
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-23 Score=276.33 Aligned_cols=94 Identities=28% Similarity=0.399 Sum_probs=82.9
Q ss_pred cCCCCCCCChHHHHHHHHHHHHc---cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEE
Q 000720 714 VGERGINLSGGQKQRIQLARAVY---SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVL 790 (1333)
Q Consensus 714 ig~~g~~LSGGQkqRv~LARAl~---~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~ 790 (1333)
.++...+||||||||++|||||+ .+|++|||||||++||++..+.+++.+.+...+|+|||++||+++.+..||+++
T Consensus 803 l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi 882 (1809)
T PRK00635 803 LGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVL 882 (1809)
T ss_pred hcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEE
Confidence 47788999999999999999997 699999999999999999988887754444446899999999999997799999
Q ss_pred EEe------CCeEEEccChHHHH
Q 000720 791 VMK------DGKIEQSGKYEDLI 807 (1333)
Q Consensus 791 vl~------~G~i~~~g~~~~l~ 807 (1333)
+|+ +|+++..|+++++.
T Consensus 883 ~L~p~gg~~~G~iv~~Gtpeel~ 905 (1809)
T PRK00635 883 ELGPEGGNLGGYLLASCSPEELI 905 (1809)
T ss_pred EEccCCCCCCCEEEEeCCHHHHH
Confidence 996 78999999887764
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-24 Score=221.53 Aligned_cols=122 Identities=39% Similarity=0.592 Sum_probs=103.6
Q ss_pred ccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC-------------eEEEEcCCCCCCC-CCHHHH
Q 000720 614 LTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------------KKAYVPQSSWIQT-GTIREN 678 (1333)
Q Consensus 614 L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g-------------~iayv~Q~~~i~~-~Tv~en 678 (1333)
|++ |+++++|++++|+|+||||||||+++|+|..+|.+|.+ .+++ .++|++|++.++. .|++||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~ 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSI-LINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEE-EETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence 578 99999999999999999999999999999999999986 6665 3799999987665 579999
Q ss_pred hccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC
Q 000720 679 ILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFS 749 (1333)
Q Consensus 679 I~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~s 749 (1333)
...++++++++.+++.. ...+.++.++.+||||||||++||||++++|++++||||||
T Consensus 80 ------~~~~~~~~~l~~l~~~~-------~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 ------ESDERIEEVLKKLGLED-------LLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp ------HHHHHHHHHHHHTTHGG-------GTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ------ccccccccccccccccc-------ccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 33455666776665443 23456777889999999999999999999999999999996
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.2e-24 Score=228.98 Aligned_cols=151 Identities=22% Similarity=0.214 Sum_probs=115.9
Q ss_pred CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCC---------cEE---------EECCeEEEEcCCCCCCCCCHHHH
Q 000720 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISG---------AAI---------KVHGKKAYVPQSSWIQTGTIREN 678 (1333)
Q Consensus 617 nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G---------~~i---------~~~g~iayv~Q~~~i~~~Tv~en 678 (1333)
++++++| +++|+||||||||||+++|.|.+++..| .++ ....+++|++|+|..+
T Consensus 17 ~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~------- 88 (197)
T cd03278 17 TIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR------- 88 (197)
T ss_pred eeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc-------
Confidence 7899999 9999999999999999999998866532 111 0123689999999876
Q ss_pred hccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHH
Q 000720 679 ILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY----SNSDVYIFDDPFSAVDAH 754 (1333)
Q Consensus 679 I~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~----~~~~illLDEP~saLD~~ 754 (1333)
|+.. ..++.+++++. . ....+++.+||||||||++||||+. ++|++++||||+++||+.
T Consensus 89 --~~~~-~~~~~~~~l~~----------~----~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~ 151 (197)
T cd03278 89 --YSII-SQGDVSEIIEA----------P----GKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDA 151 (197)
T ss_pred --eeEE-ehhhHHHHHhC----------C----CccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHH
Confidence 2211 12233333332 1 1123567899999999999999986 577999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEe
Q 000720 755 TGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMK 793 (1333)
Q Consensus 755 ~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~ 793 (1333)
....+.+ .++...++.|+|++||+++.+..||+++.|.
T Consensus 152 ~~~~l~~-~l~~~~~~~tiIiitH~~~~~~~~d~v~~~~ 189 (197)
T cd03278 152 NVERFAR-LLKEFSKETQFIVITHRKGTMEAADRLYGVT 189 (197)
T ss_pred HHHHHHH-HHHHhccCCEEEEEECCHHHHhhcceEEEEE
Confidence 9888776 4455555789999999999988899999985
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-19 Score=207.03 Aligned_cols=458 Identities=17% Similarity=0.181 Sum_probs=257.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC-----ChHH---HHHHHHhhHHHHHHH
Q 000720 317 GLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAGP-----SSGI---IINMINVDVERIGDF 388 (1333)
Q Consensus 317 g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~rir~~l~~~iy~K~L~ls~~~~-----~~G~---i~nlms~D~~~i~~~ 388 (1333)
++.+.-. ++..+-.++.+..-.|...+++...|.-|+.-+|++=+. ++.- ..|. .-|-++.|+..+.+.
T Consensus 157 ~~~LlkW-~liaiPAtFvNS~Iryle~klaLafrtrL~~h~y~~Y~s--nqTyY~Vsn~d~~i~n~D~sLTeDI~~Fs~s 233 (728)
T KOG0064|consen 157 LWDLLKW-FLIAIPASFVNSAIRYLESKLALAFRTRLTRHAYDMYLS--NQTFYKVSNLDSVIENADNSLTEDIAKFSDS 233 (728)
T ss_pred HHHHHHH-HhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCceEEEecccchhcCccchhHHHHHHHHHH
Confidence 4444422 333334456666777888899999999999999998763 3211 2222 335688999888877
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhh
Q 000720 389 FLYIHRIWLLP-VQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDAR----IKATSETLKS 463 (1333)
Q Consensus 389 ~~~~~~~w~~p-lqi~~~l~lL~~~lG~~a~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~R----~~~~~E~L~~ 463 (1333)
...+..-.+-| +.++++.+-|-...+ --...|.....+.+.++..+-|..+.--.++......| -.+=+.+++|
T Consensus 234 vahLysnLtKP~lDl~l~s~~L~~s~~-s~g~~~~~~~~lvv~lTa~iLr~~sP~Fg~Lv~eeA~r~g~lr~~Hs~ii~N 312 (728)
T KOG0064|consen 234 VAHLYSNLTKPVLDLILISFTLLDSAT-SVGAAGITLAGLVVYLTAFILRAVSPKFGKLVAEEAARKGYLRYLHSNIITN 312 (728)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhhhc-cccccchhhhhhHHHHHHHHHHHhCCchhhHHHHHHhhccHHHHHHHHHhcc
Confidence 66555555555 455555554444332 11111111122222223333333222222222222222 2345678888
Q ss_pred hHHHHHhchHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHH---HHHHHHH--HHHHH-HHHHHHhcCC--CC---
Q 000720 464 MRVLKLLSWEQEFLKKLLRLREIER---D-SLKKYLYTCSAIAFL---FWASPTL--VSVIT-FGVCILLKTP--LT--- 528 (1333)
Q Consensus 464 Ir~IK~~~wE~~f~~~i~~~R~~E~---~-~l~~~~~~~a~~~~~---~~~~p~l--v~~~t-F~~~~~~~~~--Lt--- 528 (1333)
-.-|-+|+-.+.=.+++++.-+.=. . ..++.......-.|+ .|+..-+ +++=. +++. ..++. +.
T Consensus 313 sEEIAfy~GhkvE~~ql~~sy~~L~~qm~li~k~r~~YiMleqF~mKYvWsg~GlvmvsiPI~~~t~-~s~~~~~~~e~~ 391 (728)
T KOG0064|consen 313 SEEIAFYGGHKVELTQVDESYNRLVEQMNLIFKVRLWYIMLEQFVMKYTWSGTGLVMVSIPILTSTL-ASEGTLQLSEEG 391 (728)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEEeeeeeccc-CCCCcccccccc
Confidence 8999999887665555554322111 1 111111111111111 2221111 11000 1111 11121 11
Q ss_pred --HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cC------CCCCC-----CC--------CCCC
Q 000720 529 --SGAVLSA-LATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKE-DN------QKKPI-----TE--------PTSK 585 (1333)
Q Consensus 529 --~~~vft~-lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~-~e------~~~~~-----~~--------~~~~ 585 (1333)
-...|++ =-++-.....+..+-...-.+.|-..--.|+.+.++- ++ +...+ ++ .+-+
T Consensus 392 ~srt~~f~t~r~LL~saAdAieRlMssyKeItqLaGyt~Rv~~mf~v~~dv~~g~~~k~~v~e~~~~~~~~e~r~s~~l~ 471 (728)
T KOG0064|consen 392 NSRTKEFITNRRLLLSAADAIERLMSSYKEITQLAGYTNRVFTMFSVLHDVHKGNYNKTAVPEILSSRTIDESRNSNPLP 471 (728)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccccccccCchhhccCccccccCCcCC
Confidence 1122322 2223333344444555555555555566677644421 11 00000 00 0000
Q ss_pred -----CCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEE--
Q 000720 586 -----ASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV-- 657 (1333)
Q Consensus 586 -----~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~-- 657 (1333)
.....|.++|+..-=|+. ..+... +|+|++|..+.|+||||||||+|.+.|.|+-|...|.. ..
T Consensus 472 ~~~~i~~~~gI~lenIpvItP~~-------~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L-~~P~ 543 (728)
T KOG0064|consen 472 TTDAIRNFNGIILENIPVITPAG-------DVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLL-SIPR 543 (728)
T ss_pred ccchhhcccceEEecCceeccCc-------ceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCee-ecCC
Confidence 012347777776655543 334555 99999999999999999999999999999988877754 33
Q ss_pred CCeEEEEcCCCCCCCCCHHHHhccCCc--------CCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHH
Q 000720 658 HGKKAYVPQSSWIQTGTIRENILFGKD--------MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1333)
Q Consensus 658 ~g~iayv~Q~~~i~~~Tv~enI~~g~~--------~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv 729 (1333)
..++-|+||.|..--||.||-|.+... +.+.....+++...|+.-+ ....|-+ .+-+--.-||||+|||+
T Consensus 544 ~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~-qr~~g~d-a~~dWkd~LsgGekQR~ 621 (728)
T KOG0064|consen 544 PNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHIL-QREGGWD-AVRDWKDVLSGGEKQRM 621 (728)
T ss_pred CcceEeccCCCccCcCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHH-HhccChh-hhccHHhhccchHHHHH
Confidence 346899999999888999999998632 2233444555555444222 2222211 12222347999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEE
Q 000720 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVM 792 (1333)
Q Consensus 730 ~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl 792 (1333)
++||..|++|+.-+|||.|||+.+++...+|+.+. ..|.+.|-|||++...+.-.+.+-.
T Consensus 622 ~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak---~~gi~llsithrpslwk~h~~ll~~ 681 (728)
T KOG0064|consen 622 GMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAK---DAGISLLSITHRPSLWKYHTHLLEF 681 (728)
T ss_pred HHHHHHhcCcchhhhhhhhcccccchHHHHHHHHH---hcCceEEEeecCccHHHHHHHHHhc
Confidence 99999999999999999999999999888887432 2478999999999877654444433
|
|
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-23 Score=271.64 Aligned_cols=201 Identities=22% Similarity=0.341 Sum_probs=162.5
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--------
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g-------- 659 (1333)
.++.+++.+..|+.. . . ..++ ++.|++||+.++.|+|||||||++++|.|+.+|++|++ .+.|
T Consensus 563 ~~~~~~~L~k~y~~~-----~-~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a-~i~g~~i~~~~~ 634 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGK-----D-G-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEA-LIKGHDITVSTD 634 (885)
T ss_pred ceEEEcceeeeecch-----h-h-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceE-EEecCccccccc
Confidence 467888888888765 1 1 6778 99999999999999999999999999999999999986 4433
Q ss_pred ------eEEEEcCCCCC-CCCCHHHHhccCCcC---CHHH----HHHHHHHcccchHHHhhcCCCccccCCCCCCCChHH
Q 000720 660 ------KKAYVPQSSWI-QTGTIRENILFGKDM---RQSF----YEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1333)
Q Consensus 660 ------~iayv~Q~~~i-~~~Tv~enI~~g~~~---~~~~----~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQ 725 (1333)
.+|||||..-+ ...|.||.+.+-... .+.. .++.+++.+|. +.++ ....++|||+
T Consensus 635 ~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~------~~~~-----~~~~~ySgG~ 703 (885)
T KOG0059|consen 635 FQQVRKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLG------PYAN-----KQVRTYSGGN 703 (885)
T ss_pred hhhhhhhcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCCh------hhhc-----cchhhCCCcc
Confidence 37999998554 567999999874321 1222 23334444333 2222 4578999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChH
Q 000720 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYE 804 (1333)
Q Consensus 726 kqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~ 804 (1333)
|+|+++|-|+..+|++++||||++|+||+.++++++.+.+..+.++.+|++||.+++.+. |||+.+|.+|++...|+++
T Consensus 704 kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q 783 (885)
T KOG0059|consen 704 KRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQ 783 (885)
T ss_pred hhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChH
Confidence 999999999999999999999999999999888876443334445699999999999987 9999999999999999999
Q ss_pred HHHh
Q 000720 805 DLIA 808 (1333)
Q Consensus 805 ~l~~ 808 (1333)
++..
T Consensus 784 ~LKs 787 (885)
T KOG0059|consen 784 ELKS 787 (885)
T ss_pred HHHh
Confidence 9975
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-19 Score=219.25 Aligned_cols=382 Identities=17% Similarity=0.130 Sum_probs=257.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCcc------hhHHHHhccHHHHHhHH
Q 000720 928 QLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSS------RILNRCSTDQSTVDTDI 1001 (1333)
Q Consensus 928 ~~l~vy~~l~~~~~i~~~~~~~~~~~~~~~~s~~L~~~ll~~il~ap~~fFd~tp~G------rIlnRfs~Di~~vd~~l 1001 (1333)
..+.+|..++.+.......+.++-.....+.-..|-+.++++-+..- .||--...| ..=.|+..|+...-+.-
T Consensus 87 ~~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~-~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t 165 (604)
T COG4178 87 QQLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPR-RYYRLAQAGGIGLIDNPDQRIQEDIRNFTETT 165 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chHHHHhcccccCCCChHHhHHHHHHHHHhhH
Confidence 34677888888888888888888888888888888888888888766 444433333 23368888887776665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh--------------HHH-HHHHHH----HHHHHHHHHHHHHHHHHHHHHHhHhh
Q 000720 1002 PYRLAGLAFALIQLLSIIILMSQAAW--------------QVF-PLFLVI----LGISIWYQAYYITTARELARMVGTRK 1062 (1333)
Q Consensus 1002 ~~~l~~~~~~~~~~l~~ivv~~~~~~--------------~l~-lv~ipl----~~~~~~~~~~y~~~srel~rl~~~~~ 1062 (1333)
-.....++.++++++.-.+++.-.+- .++ .+++.. ..+..++.+...+-.-+..+.++.-|
T Consensus 166 ~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR 245 (604)
T COG4178 166 LDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFR 245 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHH
Confidence 55566666666666655554431111 111 111111 12223444555555556666666666
Q ss_pred chHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhccCCCCC
Q 000720 1063 APILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLI-ILVTLPRSAID 1141 (1333)
Q Consensus 1063 spl~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~ll~~~~~~~~~~-~~~~~~~~~~~ 1141 (1333)
..+. -.-+....|-.|+-|+...++..+..+.-.+.+......+.++...-...+-+.+.+-.+ ..-....|.++
T Consensus 246 ~~Lv----rv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~ 321 (604)
T COG4178 246 YSLV----RVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQIT 321 (604)
T ss_pred HHHH----HHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcCh
Confidence 5443 234556677888888877777776666665555555555544443333222222211111 11123346677
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhc------CCCCCCcccCCCCCCCCCCCcccEEEEEEEE
Q 000720 1142 PSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTN------IPSEAPLVIKNSRPSPEWPSSGKIELENLLV 1215 (1333)
Q Consensus 1142 ~g~~gl~l~y~l~l~~~l~~~v~~~~~le~~~~SveRI~~~~~------~p~E~~~~~~~~~~~~~wp~~G~I~f~nVsf 1215 (1333)
-|....+.+-..++...+.|++..+..+.+-.+++.|+.++.+ .++|.+.... .+-...--.+..|+|+|++.
T Consensus 322 ~G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~nl~l 400 (604)
T COG4178 322 FGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTG-RRIDFDDNADHGITLENLSL 400 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCccc-ccccccccccceeEEeeeeE
Confidence 7777777777777888899999999999999999999999863 2222211100 00000000146899999999
Q ss_pred EECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeEeccccccc
Q 000720 1216 QYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLF 1295 (1333)
Q Consensus 1216 ~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isiVpQdp~LF 1295 (1333)
.-+++. ..|++++|+++|||.+-|.|+||||||||+++|.|+++--+|+|.+-.- +++-++||.|++=
T Consensus 401 ~~p~~~-~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~-----------~~~lflpQ~PY~p 468 (604)
T COG4178 401 RTPDGQ-TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPAD-----------SALLFLPQRPYLP 468 (604)
T ss_pred ECCCCC-eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCC-----------CceEEecCCCCCC
Confidence 987766 5899999999999999999999999999999999999999999876411 3689999999999
Q ss_pred ccchhhhcC-CCC--CCCHHHHHHHHHhCCCCccc
Q 000720 1296 QGTVRTNLD-PLE--QHSDQEIWEVKISKLLTHKS 1327 (1333)
Q Consensus 1296 ~GTIR~NLd-p~~--~~sDeeI~~aL~~~~L~~~~ 1327 (1333)
.||+||=|. |.. +++|+|+.++|.+|+|.+-.
T Consensus 469 ~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~ 503 (604)
T COG4178 469 QGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLA 503 (604)
T ss_pred CccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHH
Confidence 999999996 553 38999999999999997653
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.1e-23 Score=237.61 Aligned_cols=201 Identities=21% Similarity=0.308 Sum_probs=161.9
Q ss_pred CccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEE-ECCeEEEEc
Q 000720 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK-VHGKKAYVP 665 (1333)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~-~~g~iayv~ 665 (1333)
...|.++|++|.|+++ ..++++ ||-+..++.+++|||||+||||||+++.|++.|..|.+.. .+.++++-.
T Consensus 387 ~pvi~~~nv~F~y~~~-------~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~ 459 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSDN-------PMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYN 459 (614)
T ss_pred CCeEEEeccccCCCCc-------chhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhh
Confidence 3579999999999876 267888 9999999999999999999999999999999999998632 234567777
Q ss_pred CCCC---CCCCCHHHHhc--cCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCC
Q 000720 666 QSSW---IQTGTIRENIL--FGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSD 740 (1333)
Q Consensus 666 Q~~~---i~~~Tv~enI~--~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ 740 (1333)
|+.. -...+.-|++. |......+..+.++..|+|..|.+.. ...+||+|||.||..||..+..|.
T Consensus 460 Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~----------p~~~LS~Gqr~rVlFa~l~~kqP~ 529 (614)
T KOG0927|consen 460 QHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVV----------PMSQLSDGQRRRVLFARLAVKQPH 529 (614)
T ss_pred hhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCcccccc----------chhhcccccchhHHHHHHHhcCCc
Confidence 7642 34568888876 33334556778889999998776543 456999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEE-EccChHHHHh
Q 000720 741 VYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE-QSGKYEDLIA 808 (1333)
Q Consensus 741 illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~-~~g~~~~l~~ 808 (1333)
+++|||||++||..+...+- +.++.. ..+||+||||..++.. |++|.+.+||.+. ..|++.....
T Consensus 530 lLlLDEPtnhLDi~tid~la-eaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~yk~ 596 (614)
T KOG0927|consen 530 LLLLDEPTNHLDIETIDALA-EAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEIYKE 596 (614)
T ss_pred EEEecCCCcCCCchhHHHHH-HHHhcc--CCceeeeechhhHHHHHHHHhHhhccCceeecCccHHHHHH
Confidence 99999999999998865443 333322 4689999999999976 9999999998874 7788776644
|
|
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.4e-22 Score=218.12 Aligned_cols=154 Identities=23% Similarity=0.302 Sum_probs=118.9
Q ss_pred CeEeeCCcEEEEECCCCCChhHHHHHHh----CCCcCCCCcEE---------EECCeEEEEcCCC-C----C-CCCCHHH
Q 000720 617 KMKIMKGSKVAVCGSVGSGKSSLLSSIL----GEIPRISGAAI---------KVHGKKAYVPQSS-W----I-QTGTIRE 677 (1333)
Q Consensus 617 nl~i~~Ge~~~ivG~~GsGKSTLl~~il----G~~~~~~G~~i---------~~~g~iayv~Q~~-~----i-~~~Tv~e 677 (1333)
++++.+| +++|+||||||||||+++|. |..+|.+|++. .....+++++|++ + + .+.|+.|
T Consensus 17 ~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~~ 95 (204)
T cd03240 17 EIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAILE 95 (204)
T ss_pred EEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHhh
Confidence 5777788 99999999999999999994 99988777431 0122578999987 2 1 1248999
Q ss_pred HhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHH------HHHHHHHccCCCEEEEeCCCCCC
Q 000720 678 NILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR------IQLARAVYSNSDVYIFDDPFSAV 751 (1333)
Q Consensus 678 nI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqR------v~LARAl~~~~~illLDEP~saL 751 (1333)
|+.++. +...++.+ ++.+.+||+||||| +++|||+..+|+++++|||+++|
T Consensus 96 ~~~~~~---~~~~~~~~--------------------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~L 152 (204)
T cd03240 96 NVIFCH---QGESNWPL--------------------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNL 152 (204)
T ss_pred ceeeec---hHHHHHHH--------------------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCcccc
Confidence 997752 11111111 35678999999996 78999999999999999999999
Q ss_pred CHHHHH-HHHHHHHHHHhC-CCeEEEecCchhhhhcCCEEEEEeC
Q 000720 752 DAHTGT-HLFKQCLMGLLS-QKTVLYTTHQLEFLDAADLVLVMKD 794 (1333)
Q Consensus 752 D~~~~~-~l~~~~~~~~~~-~~TvIlvtH~~~~l~~aD~i~vl~~ 794 (1333)
|+...+ .+.+.+.+...+ ++|+|++||+++.+..||+++.|++
T Consensus 153 D~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~ 197 (204)
T cd03240 153 DEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEK 197 (204)
T ss_pred CHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEee
Confidence 999888 776644333333 7899999999998888999999953
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-22 Score=202.02 Aligned_cols=173 Identities=22% Similarity=0.266 Sum_probs=128.1
Q ss_pred cccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEEC---------------------CeEEEEcCCC
Q 000720 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH---------------------GKKAYVPQSS 668 (1333)
Q Consensus 611 ~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~---------------------g~iayv~Q~~ 668 (1333)
-|++++ +|+++.||++++-||+|+||||||+++-|.+.|++|++ .+. ..+|||+|--
T Consensus 24 LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I-~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFL 102 (235)
T COG4778 24 LPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQI-LVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFL 102 (235)
T ss_pred eeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceE-EEEeCcchhhhhccChHHHHHHHHhhhHHHHHHH
Confidence 578999 99999999999999999999999999999999999987 332 1469999963
Q ss_pred -CCCCCCHHHHhc-----cCCcCCHH--HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCC
Q 000720 669 -WIQTGTIRENIL-----FGKDMRQS--FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSD 740 (1333)
Q Consensus 669 -~i~~~Tv~enI~-----~g~~~~~~--~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ 740 (1333)
.++.-+..|-+. -|-+.+.. +-...+....+.+ ....-.+.+.|||+||||.|||.++.|-+
T Consensus 103 RviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlpe----------rLW~LaPaTFSGGEqQRVNIaRgfivd~p 172 (235)
T COG4778 103 RVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPE----------RLWSLAPATFSGGEQQRVNIARGFIVDYP 172 (235)
T ss_pred HhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCH----------HHhcCCCcccCCchheehhhhhhhhccCc
Confidence 344444333332 22222211 1122222222222 12234578999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeC
Q 000720 741 VYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKD 794 (1333)
Q Consensus 741 illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~ 794 (1333)
|+||||||++||+..+..+.+.+-+...+|..+|=+=||-+.-+. |||++-|..
T Consensus 173 ILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 173 ILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred eEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeeccc
Confidence 999999999999999877766443445578999999999877655 999988753
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.6e-22 Score=219.62 Aligned_cols=202 Identities=21% Similarity=0.330 Sum_probs=131.2
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCeEEEEcCCC
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSS 668 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~iayv~Q~~ 668 (1333)
.|.++|-+.|-.. +...-+ ++.|-.|..+++|||||-||||||+-|..---...-.+ .+-||-|+.
T Consensus 264 DIKiEnF~ISA~G--------k~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnI-----DvLlCEQEv 330 (807)
T KOG0066|consen 264 DIKIENFDISAQG--------KLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNI-----DVLLCEQEV 330 (807)
T ss_pred cceeeeeeeeccc--------ceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCC-----ceEeeeeee
Confidence 4777776665432 345566 99999999999999999999999999986421111111 356788876
Q ss_pred CCCCCCHHHHhccC---------------------CcCCHHHHHHHHH---Hccc---chHHH-hh-cCCCccccC-CCC
Q 000720 669 WIQTGTIRENILFG---------------------KDMRQSFYEEVLE---GCAL---NQDIE-MW-ADGDLSVVG-ERG 718 (1333)
Q Consensus 669 ~i~~~Tv~enI~~g---------------------~~~~~~~~~~v~~---~~~l---~~d~~-~~-~~g~~t~ig-~~g 718 (1333)
...+.|.-+.|+-. .....++.+++.+ +.+- +.... .+ -.|-..+.. +..
T Consensus 331 vad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt 410 (807)
T KOG0066|consen 331 VADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPT 410 (807)
T ss_pred eecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCc
Confidence 55555544444321 0001122222211 1110 00000 00 012222222 345
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeE
Q 000720 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKI 797 (1333)
Q Consensus 719 ~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i 797 (1333)
..+|||.|.||+||||||.+|.++.|||||++||.....++ ++.+.++ .+|.++|+||-.|+.. |..|+.+++-++
T Consensus 411 ~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWL-dNYLQgW--kKTLLIVSHDQgFLD~VCtdIIHLD~qkL 487 (807)
T KOG0066|consen 411 TKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWL-DNYLQGW--KKTLLIVSHDQGFLDSVCTDIIHLDNQKL 487 (807)
T ss_pred cccCCceeeehhHHHHHhcCceeeeecCCccccccceeeeh-hhHHhhh--hheeEEEecccchHHHHHHHHhhhhhhhh
Confidence 68999999999999999999999999999999998654333 3333333 4899999999999976 999999999887
Q ss_pred E-EccChHHHH
Q 000720 798 E-QSGKYEDLI 807 (1333)
Q Consensus 798 ~-~~g~~~~l~ 807 (1333)
- +.|+|.-+.
T Consensus 488 hyYrGNY~~FK 498 (807)
T KOG0066|consen 488 HYYRGNYTLFK 498 (807)
T ss_pred hhhcchHHHHH
Confidence 4 677776543
|
|
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.3e-21 Score=213.53 Aligned_cols=160 Identities=16% Similarity=0.193 Sum_probs=110.4
Q ss_pred CCcEEEEECCCCCChhHHHHHHhCCC-cCCCCcEE-----------EECCeEEEEcCCCCCCCCCHHHHhccCCcCCHHH
Q 000720 622 KGSKVAVCGSVGSGKSSLLSSILGEI-PRISGAAI-----------KVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSF 689 (1333)
Q Consensus 622 ~Ge~~~ivG~~GsGKSTLl~~ilG~~-~~~~G~~i-----------~~~g~iayv~Q~~~i~~~Tv~enI~~g~~~~~~~ 689 (1333)
+|++++|+||||||||||+++|.+.+ -+..+... .....+++++|++.......| + . ..+.+.
T Consensus 27 ~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~r-~---~-gl~~~~ 101 (213)
T cd03279 27 NNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKYRVER-S---R-GLDYDQ 101 (213)
T ss_pred ccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEEEECCeEEEEEE-e---c-CCCHHH
Confidence 48899999999999999999999643 22222211 012357888887632211111 1 1 222222
Q ss_pred HHHHHHHcccchHHHhhcCC-CccccCCCCCCCChHHHHHHHHHHHHcc----------CCCEEEEeCCCCCCCHHHHHH
Q 000720 690 YEEVLEGCALNQDIEMWADG-DLSVVGERGINLSGGQKQRIQLARAVYS----------NSDVYIFDDPFSAVDAHTGTH 758 (1333)
Q Consensus 690 ~~~v~~~~~l~~d~~~~~~g-~~t~ig~~g~~LSGGQkqRv~LARAl~~----------~~~illLDEP~saLD~~~~~~ 758 (1333)
+.+.. . ++.+ ..+.++.++.+||||||||++||||++. +|++++|||||++||+...+.
T Consensus 102 ~~~~~---~-------l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~ 171 (213)
T cd03279 102 FTRIV---L-------LPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEA 171 (213)
T ss_pred HHHhh---h-------hhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHH
Confidence 22111 0 1112 1234467888999999999999999984 679999999999999999887
Q ss_pred HHHHHHHHHh-CCCeEEEecCchhhhhc-CCEEEEEeCCeE
Q 000720 759 LFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKI 797 (1333)
Q Consensus 759 l~~~~~~~~~-~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i 797 (1333)
+.+ .++.+. +++|+|++||+++++.. +|++++|++|..
T Consensus 172 ~~~-~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 172 VAT-ALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred HHH-HHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 765 444444 47899999999998865 899999998853
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-21 Score=218.13 Aligned_cols=79 Identities=29% Similarity=0.328 Sum_probs=67.8
Q ss_pred cCCCCCCCChHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEE
Q 000720 714 VGERGINLSGGQKQRIQLARAVY----SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLV 789 (1333)
Q Consensus 714 ig~~g~~LSGGQkqRv~LARAl~----~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i 789 (1333)
.++++.+||||||||++||||++ .+|+++++||||++||+...+.+.+. +..+.++.|+|++||+.+....||++
T Consensus 152 ~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~-l~~~~~~~~ii~~~h~~~~~~~~d~i 230 (243)
T cd03272 152 EQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANM-IKELSDGAQFITTTFRPELLEVADKF 230 (243)
T ss_pred ccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHH-HHHHhCCCEEEEEecCHHHHhhCCEE
Confidence 45788999999999999999996 36899999999999999998888764 44555578889999998777789999
Q ss_pred EEEe
Q 000720 790 LVMK 793 (1333)
Q Consensus 790 ~vl~ 793 (1333)
++|+
T Consensus 231 ~~l~ 234 (243)
T cd03272 231 YGVK 234 (243)
T ss_pred EEEE
Confidence 9995
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.6e-21 Score=217.46 Aligned_cols=172 Identities=20% Similarity=0.256 Sum_probs=123.2
Q ss_pred CcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEE----------------CCeEEEEcCCCC----------CCCCCHH
Q 000720 623 GSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV----------------HGKKAYVPQSSW----------IQTGTIR 676 (1333)
Q Consensus 623 Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~----------------~g~iayv~Q~~~----------i~~~Tv~ 676 (1333)
..+++|+||||||||||+++|.+.+.+..|+.+.. ..++++++|++- .+..||.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 55999999999999999999999987653311111 126789999852 1245888
Q ss_pred HHhccCCc----C-----CHHHHHHHHHHcccchH----------HHhhcCCCccccCCCCCCCChHHHHHHHHHHHHc-
Q 000720 677 ENILFGKD----M-----RQSFYEEVLEGCALNQD----------IEMWADGDLSVVGERGINLSGGQKQRIQLARAVY- 736 (1333)
Q Consensus 677 enI~~g~~----~-----~~~~~~~v~~~~~l~~d----------~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~- 736 (1333)
+|+..+.. . ..+...+.++.+++..| ++.+-.. ....+.++.+||||||||++||||++
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~-~~~~~~~~~~lS~G~~qr~~la~al~~ 183 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNM-GGVWKESLTELSGGQRSLVALSLILAL 183 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHh-HHhhcccccccCHHHHHHHHHHHHHHH
Confidence 88866532 1 12344455565555311 1110000 02334678899999999999999997
Q ss_pred ---cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEe--CCe
Q 000720 737 ---SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMK--DGK 796 (1333)
Q Consensus 737 ---~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~--~G~ 796 (1333)
.+|+++++||||++||+...+++.+. ++...+|.|+|++||+.+.++.||+++-+. ||.
T Consensus 184 ~~~~~~~illlDEPt~~ld~~~~~~~~~~-l~~~~~g~~ii~iSH~~~~~~~~d~v~~~~~~~~~ 247 (251)
T cd03273 184 LLFKPAPMYILDEVDAALDLSHTQNIGRM-IKTHFKGSQFIVVSLKEGMFNNANVLFRTRFVDGT 247 (251)
T ss_pred hhccCCCEEEEeCCCcCCCHHHHHHHHHH-HHHHcCCCEEEEEECCHHHHHhCCEEEEEEeeCCE
Confidence 57899999999999999998888764 444556889999999988888899998875 553
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-20 Score=242.26 Aligned_cols=98 Identities=26% Similarity=0.440 Sum_probs=87.0
Q ss_pred cCCCCCCCChHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEE
Q 000720 714 VGERGINLSGGQKQRIQLARAVYSNS---DVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVL 790 (1333)
Q Consensus 714 ig~~g~~LSGGQkqRv~LARAl~~~~---~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~ 790 (1333)
.+++..+||||||||+.|||+|.++| ++|||||||++||++....+.+.+.+...+|+|||++||+++.+..||+|+
T Consensus 824 l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~~aD~ii 903 (943)
T PRK00349 824 LGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIKTADWII 903 (943)
T ss_pred ccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEE
Confidence 57788999999999999999999999 999999999999999988887654333346899999999999998899999
Q ss_pred EE------eCCeEEEccChHHHHhhcc
Q 000720 791 VM------KDGKIEQSGKYEDLIADQN 811 (1333)
Q Consensus 791 vl------~~G~i~~~g~~~~l~~~~~ 811 (1333)
.| ++|+|++.|+++++.++..
T Consensus 904 ~Lgp~~G~~~G~Iv~~Gt~~el~~~~~ 930 (943)
T PRK00349 904 DLGPEGGDGGGEIVATGTPEEVAKVEA 930 (943)
T ss_pred EecCCcCCCCCEEEEeCCHHHHHhCcc
Confidence 99 7999999999999986443
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-20 Score=224.14 Aligned_cols=186 Identities=25% Similarity=0.410 Sum_probs=144.9
Q ss_pred cccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCe--------------EEEEcCCC----CCCCC
Q 000720 613 KLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------------KAYVPQSS----WIQTG 673 (1333)
Q Consensus 613 ~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~--------------iayv~Q~~----~i~~~ 673 (1333)
.++| +|++.+||+++|.|-.|||+|-|+++|.|.-++.+|++ .++|+ ++|||.|- .+...
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i-~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~ 352 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEI-LLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDM 352 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceE-EECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCC
Confidence 3667 99999999999999999999999999999888888986 88875 69999874 45678
Q ss_pred CHHHHhccCC--c------CCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 000720 674 TIRENILFGK--D------MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFD 745 (1333)
Q Consensus 674 Tv~enI~~g~--~------~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLD 745 (1333)
+|++||.+.. . .+..+-++..+ ....++..-.. -......+||||.+|||.|||.|+.+|+++|||
T Consensus 353 sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~--~~~~~l~Ik~~----s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilD 426 (500)
T COG1129 353 SIAENITLASLRRFSRRGLIDRRKERALAE--RYIRRLRIKTP----SPEQPIGTLSGGNQQKVVLARWLATDPKVLILD 426 (500)
T ss_pred cHHHheehHhhhhhccccccChHHHHHHHH--HHHHhcCcccC----CccchhhcCCchhhhhHHHHHHHhcCCCEEEEC
Confidence 9999998761 1 11111111111 11111111111 123567899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhh-hcCCEEEEEeCCeEEEccChHH
Q 000720 746 DPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYED 805 (1333)
Q Consensus 746 EP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l-~~aD~i~vl~~G~i~~~g~~~~ 805 (1333)
|||-|+|.-+..++++.+.+...+|++||++|-++.++ ..||||+||++|+|+..-+.++
T Consensus 427 EPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~~ 487 (500)
T COG1129 427 EPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDREE 487 (500)
T ss_pred CCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEecccc
Confidence 99999999999999986555667899999999999876 4699999999999987544433
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.8e-21 Score=209.52 Aligned_cols=118 Identities=58% Similarity=0.977 Sum_probs=109.0
Q ss_pred CCCcccEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHH
Q 000720 1202 WPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDL 1281 (1333)
Q Consensus 1202 wp~~G~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~L 1281 (1333)
||..+.|+++|++++|+....++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+..++
T Consensus 1 ~~~~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 80 (207)
T cd03369 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDL 80 (207)
T ss_pred CCCCCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHH
Confidence 89999999999999996533359999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCeEecccccccccchhhhcCCCCCCCHHHHHHHHH
Q 000720 1282 RSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVKI 1319 (1333)
Q Consensus 1282 Rs~isiVpQdp~LF~GTIR~NLdp~~~~sDeeI~~aL~ 1319 (1333)
|++++++||+|.+|++|+++|+..+...+++++.++++
T Consensus 81 ~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~ 118 (207)
T cd03369 81 RSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR 118 (207)
T ss_pred HhhEEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh
Confidence 99999999999999999999998766667777777776
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.7e-22 Score=196.92 Aligned_cols=183 Identities=23% Similarity=0.362 Sum_probs=142.9
Q ss_pred ccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCe-------------EEEEcCCC-CCCCCCHHHH
Q 000720 614 LTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-------------KAYVPQSS-WIQTGTIREN 678 (1333)
Q Consensus 614 L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~-------------iayv~Q~~-~i~~~Tv~en 678 (1333)
|-. +.++..||+.-++|||||||||||..++|..+ -+|++ .+.|. -+|.+|+. -.|.+.|...
T Consensus 15 L~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~-~sGsi-~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~Y 92 (248)
T COG4138 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GSGSI-QFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHY 92 (248)
T ss_pred ccccccccccceEEEEECCCCccHHHHHHHHhCCCC-CCceE-EECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhh
Confidence 444 77899999999999999999999999999875 58886 78774 38999864 4567788888
Q ss_pred hccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHcc-------CCCEEEEeCCCCCC
Q 000720 679 ILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS-------NSDVYIFDDPFSAV 751 (1333)
Q Consensus 679 I~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~-------~~~illLDEP~saL 751 (1333)
+....|- +++-.++-+.|.+ +. .....|+...+||||+-|||-||-...+ +.+++|+|||.++|
T Consensus 93 L~L~qP~-~~~a~~i~~i~~~------L~--l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~L 163 (248)
T COG4138 93 LTLHQPD-KTRTELLNDVAGA------LA--LDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSL 163 (248)
T ss_pred hhhcCch-HHHHHHHHHHHhh------hc--ccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcch
Confidence 8876653 3333332222321 11 1224567788999999999999988775 45799999999999
Q ss_pred CHHHHHHHHHHHHHHH-hCCCeEEEecCchh-hhhcCCEEEEEeCCeEEEccChHHHHh
Q 000720 752 DAHTGTHLFKQCLMGL-LSQKTVLYTTHQLE-FLDAADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 752 D~~~~~~l~~~~~~~~-~~~~TvIlvtH~~~-~l~~aD~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
|...... .+.++... ..|.|||+..||++ .+..||++..++.|++...|..+|++.
T Consensus 164 DvAQ~~a-Ldrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt 221 (248)
T COG4138 164 DVAQQSA-LDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLT 221 (248)
T ss_pred hHHHHHH-HHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcC
Confidence 9976554 45555544 46899999999996 589999999999999999999999986
|
|
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.2e-21 Score=216.22 Aligned_cols=167 Identities=20% Similarity=0.201 Sum_probs=118.5
Q ss_pred EEEEECCCCCChhHHHHHHhCCCcCCCCcEEEEC--------C------------eEEEEcCCCC--CCCCCHHHHhc--
Q 000720 625 KVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH--------G------------KKAYVPQSSW--IQTGTIRENIL-- 680 (1333)
Q Consensus 625 ~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~--------g------------~iayv~Q~~~--i~~~Tv~enI~-- 680 (1333)
+++|+||||||||||+.+|.+.+.+..|+. ... + .+.|..|++- +...++++.-.
T Consensus 24 ~~~i~G~NGsGKStll~ai~~~l~~~~~~~-r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~ 102 (247)
T cd03275 24 FTCIIGPNGSGKSNLMDAISFVLGEKSSHL-RSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSY 102 (247)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCcccc-cccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEE
Confidence 999999999999999999998876654432 110 1 1234444321 12223332211
Q ss_pred --cCCcCCHHHHHHHHHHcccchHHHh--hcCCCccccC---------CCCCCCChHHHHHHHHHHHHccC----CCEEE
Q 000720 681 --FGKDMRQSFYEEVLEGCALNQDIEM--WADGDLSVVG---------ERGINLSGGQKQRIQLARAVYSN----SDVYI 743 (1333)
Q Consensus 681 --~g~~~~~~~~~~v~~~~~l~~d~~~--~~~g~~t~ig---------~~g~~LSGGQkqRv~LARAl~~~----~~ill 743 (1333)
-+.+.....+++.++.|++..+... .++|+.+.+. +++.+||||||||++||||++.+ |+++|
T Consensus 103 ~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~ll 182 (247)
T cd03275 103 RINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFV 182 (247)
T ss_pred EECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEE
Confidence 1345566778888898888654222 2345444442 23489999999999999999764 99999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhhcCCEEEEEe
Q 000720 744 FDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLVMK 793 (1333)
Q Consensus 744 LDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~~aD~i~vl~ 793 (1333)
|||||++||+.....+.+. +.... +|.|+|+|||+.+.+..||++++|.
T Consensus 183 lDEPt~~LD~~~~~~l~~~-i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~ 232 (247)
T cd03275 183 LDEVDAALDNTNVGKVASY-IREQAGPNFQFIVISLKEEFFSKADALVGVY 232 (247)
T ss_pred EecccccCCHHHHHHHHHH-HHHhccCCcEEEEEECCHHHHhhCCeEEEEE
Confidence 9999999999998888764 44443 4789999999999888899999985
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.4e-20 Score=211.59 Aligned_cols=183 Identities=22% Similarity=0.384 Sum_probs=136.3
Q ss_pred eeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCeEEEEcCCC-CCCC
Q 000720 595 AGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSS-WIQT 672 (1333)
Q Consensus 595 ~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~iayv~Q~~-~i~~ 672 (1333)
+.-++|++-...+ ..+.|.. .=++..||+++++||||-||||+.+.|+|.++|++|+ ..+-+++|=||.- .-++
T Consensus 340 ~~lv~y~~~~k~~--g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~--~~~~~vSyKPQyI~~~~~ 415 (591)
T COG1245 340 DTLVEYPDLKKTY--GDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS--EEDLKVSYKPQYISPDYD 415 (591)
T ss_pred ceeeecchheeec--CceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC--CccceEeecceeecCCCC
Confidence 4556776431111 1244444 4456788899999999999999999999999999997 4456799999963 3489
Q ss_pred CCHHHHhccCCc--CCHHHHH-HHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC
Q 000720 673 GTIRENILFGKD--MRQSFYE-EVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFS 749 (1333)
Q Consensus 673 ~Tv~enI~~g~~--~~~~~~~-~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~s 749 (1333)
+||++-+.-..+ +...+|+ ++.+-..++ ..+.++..+||||+.|||++|.||.+++|+||||||.+
T Consensus 416 gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l~-----------~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA 484 (591)
T COG1245 416 GTVEDLLRSAIRSAFGSSYFKTEIVKPLNLE-----------DLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSA 484 (591)
T ss_pred CcHHHHHHHhhhhhcccchhHHhhcCccchH-----------HHHhcccccCCchhHHHHHHHHHhccccCEEEecCchh
Confidence 999998764322 3333333 333333332 22335678999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHh--CCCeEEEecCchhhhhc-CCEEEEEe
Q 000720 750 AVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLVMK 793 (1333)
Q Consensus 750 aLD~~~~~~l~~~~~~~~~--~~~TvIlvtH~~~~l~~-aD~i~vl~ 793 (1333)
.||.+.+. +..+.++... +++|.++|.||+-.+.+ +|+++|.+
T Consensus 485 ~LDvEqR~-~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 485 YLDVEQRI-IVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred hccHHHHH-HHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEe
Confidence 99997654 4445665543 46899999999999987 99999986
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-20 Score=208.77 Aligned_cols=122 Identities=57% Similarity=0.930 Sum_probs=112.9
Q ss_pred ccEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcC
Q 000720 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1285 (1333)
Q Consensus 1206 G~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~i 1285 (1333)
|+|+++|++++|+.+..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred CcEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 57999999999975444599999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEecccccccccchhhhcCCCCCCCHHHHHHHHHhCCCCccc
Q 000720 1286 SIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVKISKLLTHKS 1327 (1333)
Q Consensus 1286 siVpQdp~LF~GTIR~NLdp~~~~sDeeI~~aL~~~~L~~~~ 1327 (1333)
+++||+|.+|++|+++||+++...+++++.++++..++.+..
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~ 122 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFV 122 (221)
T ss_pred EEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHH
Confidence 999999999999999999987777888999999999886543
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4e-21 Score=196.26 Aligned_cols=123 Identities=28% Similarity=0.440 Sum_probs=109.0
Q ss_pred EEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHH---Hhhc
Q 000720 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD---LRSR 1284 (1333)
Q Consensus 1208 I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~---LRs~ 1284 (1333)
|+|+||+.+|+.+ +++|+||||+|++||.+=++|+|||||||++++|++...|+.|+|.++|.|++.+.-++ ||++
T Consensus 2 I~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 2 IRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred eeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 8999999999877 67999999999999999999999999999999999999999999999999999988665 6999
Q ss_pred CeEeccccccc-ccchhhhcC-CCC--CCC----HHHHHHHHHhCCCCcccccCC
Q 000720 1285 LSIIPQDPMLF-QGTVRTNLD-PLE--QHS----DQEIWEVKISKLLTHKSYQCE 1331 (1333)
Q Consensus 1285 isiVpQdp~LF-~GTIR~NLd-p~~--~~s----DeeI~~aL~~~~L~~~~~~~~ 1331 (1333)
||+|.||--|. +-|+.||+. |.. ..+ .+.+.++|+.+||+++..+.|
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP 135 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP 135 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc
Confidence 99999999876 559999996 432 122 356889999999999877665
|
|
| >PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.5e-18 Score=189.96 Aligned_cols=220 Identities=19% Similarity=0.281 Sum_probs=192.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCcchhHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHH
Q 000720 939 GSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSI 1018 (1333)
Q Consensus 939 ~~~i~~~~~~~~~~~~~~~~s~~L~~~ll~~il~ap~~fFd~tp~GrIlnRfs~Di~~vd~~l~~~l~~~~~~~~~~l~~ 1018 (1333)
+...+.....+...+.+.+...++++++++++++.|.+||+++++|+++||+++|++.+++.+...+..++..++..++.
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~ 132 (275)
T PF00664_consen 53 LIFLFSYIYFYLSSRISQRIRKDLRKRLFEKLLRLPYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFS 132 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccccccccccccccccccccccccccccchhhhh
Confidence 34444444555567889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHH
Q 000720 1019 IILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDD 1098 (1333)
Q Consensus 1019 ivv~~~~~~~l~lv~ipl~~~~~~~~~~y~~~srel~rl~~~~~spl~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~ 1098 (1333)
+++++..+|+++++++...+++..+..++.+..++..+...+..++..+++.|.++|+++||+|+.|+++.+++.+..++
T Consensus 133 ~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~ 212 (275)
T PF00664_consen 133 LILLFFISWKLALILLIILPLLFLISFIFSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEK 212 (275)
T ss_dssp HHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred hhcccccccccccccchhhhhhHhhhhhhccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999998889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-ccCCCCChHHHHHHHHHHHHHHHH
Q 000720 1099 YSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILV-T-LPRSAIDPSLAGLAATYGLNLNVL 1158 (1333)
Q Consensus 1099 ~~~~~~~~~~~~~wl~~rl~ll~~~~~~~~~~~~~-~-~~~~~~~~g~~gl~l~y~l~l~~~ 1158 (1333)
..+...+....+.|.....+++..+...++..++. . ...+..++|.....+.|...+..+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~p 274 (275)
T PF00664_consen 213 YRKASFKYAKIQALLSSISQFISYLSIVLILIFGAYLSVINGQISIGTLVAFLSLSSQLINP 274 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhh
Confidence 99999999999999999888888875555544443 3 456778888877777776665543
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.8e-20 Score=209.85 Aligned_cols=122 Identities=46% Similarity=0.748 Sum_probs=111.1
Q ss_pred CcccEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhh
Q 000720 1204 SSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRS 1283 (1333)
Q Consensus 1204 ~~G~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs 1283 (1333)
..|.|+++|++++|+.....+|+|+||+|+|||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+..++|+
T Consensus 16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 46899999999999654345999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCeEecccccccccchhhhcCCCCCCCHHHHHHHHHhCCCCc
Q 000720 1284 RLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVKISKLLTH 1325 (1333)
Q Consensus 1284 ~isiVpQdp~LF~GTIR~NLdp~~~~sDeeI~~aL~~~~L~~ 1325 (1333)
+++++||+|.+|++|+++|+++.....+++++++++.+++.+
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~ 137 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKN 137 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHH
Confidence 999999999999999999998765556778888888877754
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-20 Score=237.01 Aligned_cols=188 Identities=26% Similarity=0.370 Sum_probs=150.6
Q ss_pred CcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCc--CCCCcEEEECC----------eEEEEcCCC-CCCCCCH
Q 000720 610 PTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP--RISGAAIKVHG----------KKAYVPQSS-WIQTGTI 675 (1333)
Q Consensus 610 ~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~--~~~G~~i~~~g----------~iayv~Q~~-~i~~~Tv 675 (1333)
....|+| +=-++||.++|++|++||||||||+.|+|-.. ..+|.+ .++| .+|||.|+. ++...||
T Consensus 803 ~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi-~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TV 881 (1391)
T KOG0065|consen 803 TRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDI-LISGFPKDQETFARVSGYVEQQDIHSPELTV 881 (1391)
T ss_pred ceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEE-EECCeeCchhhhccccceeecccccCcccch
Confidence 4567888 88899999999999999999999999999642 234443 5555 469999975 6888999
Q ss_pred HHHhccCCcC-------CHHH---HHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCC-CEEEE
Q 000720 676 RENILFGKDM-------RQSF---YEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNS-DVYIF 744 (1333)
Q Consensus 676 ~enI~~g~~~-------~~~~---~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~-~illL 744 (1333)
||-+.|.... ++++ .++|++-.+|+ .-.+..||..|.-||..||+|+.||--|..+| -|++|
T Consensus 882 rESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~-------~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFL 954 (1391)
T KOG0065|consen 882 RESLRFSAALRLPKEVSDEEKYEYVEEVIELLELK-------EYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFL 954 (1391)
T ss_pred HHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCch-------hhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEe
Confidence 9999985321 2233 34455544433 12345789999999999999999999999999 89999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhh--hhcCCEEEEEe-CCeEEEccChHH
Q 000720 745 DDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEF--LDAADLVLVMK-DGKIEQSGKYED 805 (1333)
Q Consensus 745 DEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~--l~~aD~i~vl~-~G~i~~~g~~~~ 805 (1333)
||||||||+.++..+++.+.+....|+||+.+-||++- .+..|+++.|+ +|+.++.|+..+
T Consensus 955 DEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 955 DEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred cCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 99999999999888887655566789999999999964 57899999995 789999998765
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-19 Score=232.07 Aligned_cols=93 Identities=28% Similarity=0.472 Sum_probs=82.9
Q ss_pred cCCCCCCCChHHHHHHHHHHHHcc---CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEE
Q 000720 714 VGERGINLSGGQKQRIQLARAVYS---NSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVL 790 (1333)
Q Consensus 714 ig~~g~~LSGGQkqRv~LARAl~~---~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~ 790 (1333)
.+++..+||||||||+.|||++.+ +|++|+|||||++||+...+.+.+.+.+...+|+|+|++||+++.+..||+|+
T Consensus 822 l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~~aD~ii 901 (924)
T TIGR00630 822 LGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIKTADYII 901 (924)
T ss_pred hcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEE
Confidence 578889999999999999999997 59999999999999999988887654443446899999999999998899999
Q ss_pred EE------eCCeEEEccChHHH
Q 000720 791 VM------KDGKIEQSGKYEDL 806 (1333)
Q Consensus 791 vl------~~G~i~~~g~~~~l 806 (1333)
+| ++|+|++.|+++++
T Consensus 902 ~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 902 DLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EecCCccCCCCEEEEeCCHHHh
Confidence 99 79999999998875
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2e-20 Score=194.53 Aligned_cols=123 Identities=26% Similarity=0.362 Sum_probs=109.7
Q ss_pred ccEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCC-----CeEEEcCEeCCC--CCh
Q 000720 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG-----GRILIDGVDISM--IGL 1278 (1333)
Q Consensus 1206 G~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~-----G~I~IDGvdI~~--i~l 1278 (1333)
..++++|+++-|.. ..||+|||++|++++.+|++|||||||||++.+|-|+.|..+ |+|.+||.||.+ ++.
T Consensus 6 ~~~~~~~l~~yYg~--~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 6 PAIEVRDLNLYYGD--KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred ceeEecceeEEECc--hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 36899999999974 359999999999999999999999999999999999999876 999999999987 579
Q ss_pred HHHhhcCeEecccccccccchhhhcCCCC-------CCCHHHHHHHHHhCCCCcccccC
Q 000720 1279 QDLRSRLSIIPQDPMLFQGTVRTNLDPLE-------QHSDQEIWEVKISKLLTHKSYQC 1330 (1333)
Q Consensus 1279 ~~LRs~isiVpQdp~LF~GTIR~NLdp~~-------~~sDeeI~~aL~~~~L~~~~~~~ 1330 (1333)
-.||+++|+|.|.|.-|..||+||+..+. ..-||-+.++|+++.|||.|.+-
T Consensus 84 ~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDr 142 (253)
T COG1117 84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDR 142 (253)
T ss_pred HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHH
Confidence 99999999999999999999999997542 12255688899999999998763
|
|
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.8e-20 Score=204.06 Aligned_cols=161 Identities=17% Similarity=0.138 Sum_probs=110.2
Q ss_pred cEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCeEEEEcCCCCCC-CCCHHHHhccCCcCCHHHHHHHHHHccc---
Q 000720 624 SKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQ-TGTIRENILFGKDMRQSFYEEVLEGCAL--- 699 (1333)
Q Consensus 624 e~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~iayv~Q~~~i~-~~Tv~enI~~g~~~~~~~~~~v~~~~~l--- 699 (1333)
++++|+|||||||||++++|.-..-..... ...++++|++|+.... +.|++++..+-...... +.++..+.
T Consensus 26 ~i~~ivGpNGaGKSTll~~i~~~~G~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~g~~~~ 100 (212)
T cd03274 26 SFSAIVGPNGSGKSNVIDSMLFVFGFRASK--MRQKKLSDLIHNSAGHPNLDSCSVEVHFQEIIDK---PLLKSKGIDLD 100 (212)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhccCHHH--hhhhhHHHHhcCCCCCCCCceEEEEEEEEeCCCH---HHHHHCCcCCC
Confidence 899999999999999999998211000001 1124688999987543 45788877654332110 01100000
Q ss_pred ----------chHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 000720 700 ----------NQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS----NSDVYIFDDPFSAVDAHTGTHLFKQCLM 765 (1333)
Q Consensus 700 ----------~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~----~~~illLDEP~saLD~~~~~~l~~~~~~ 765 (1333)
..++..++++ ...+...||+|||||++||||++. +|++++|||||++||++....+.+ .++
T Consensus 101 ~~~~~v~~~~~~~~~~L~~~----~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~-~l~ 175 (212)
T cd03274 101 HNRFLILQGEVEQIAQMPKK----SWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVAN-YIK 175 (212)
T ss_pred CCceEEcCCcEEEeeccccc----cccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHH-HHH
Confidence 0111222222 234567999999999999999974 589999999999999998876665 455
Q ss_pred HHhCCCeEEEecCchhhhhcCCEEEEEeC
Q 000720 766 GLLSQKTVLYTTHQLEFLDAADLVLVMKD 794 (1333)
Q Consensus 766 ~~~~~~TvIlvtH~~~~l~~aD~i~vl~~ 794 (1333)
...++.|+|++||+.+....||++++|..
T Consensus 176 ~~~~~~~~iivs~~~~~~~~~d~v~~~~~ 204 (212)
T cd03274 176 ERTKNAQFIVISLRNNMFELADRLVGIYK 204 (212)
T ss_pred HHcCCCEEEEEECcHHHHHhCCEEEEEEe
Confidence 56667899999999877778999999963
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.7e-20 Score=193.67 Aligned_cols=123 Identities=30% Similarity=0.451 Sum_probs=105.4
Q ss_pred cEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCC-CCChHHHhhcC
Q 000720 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDIS-MIGLQDLRSRL 1285 (1333)
Q Consensus 1207 ~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~-~i~l~~LRs~i 1285 (1333)
-|+++||+.+|... .||||||++|++||.|.|+||||||||||+.+|.++-+|++|+|.|||.++. +.++..+|+++
T Consensus 2 mi~i~~l~K~fg~~--~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 2 MIEIKNLSKSFGDK--EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred eEEEEeeeEEeCCe--EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence 48999999999754 4999999999999999999999999999999999999999999999998874 34899999999
Q ss_pred eEeccccccccc-chhhhcC--CC--CCC----CHHHHHHHHHhCCCCcccccCC
Q 000720 1286 SIIPQDPMLFQG-TVRTNLD--PL--EQH----SDQEIWEVKISKLLTHKSYQCE 1331 (1333)
Q Consensus 1286 siVpQdp~LF~G-TIR~NLd--p~--~~~----sDeeI~~aL~~~~L~~~~~~~~ 1331 (1333)
|+|+|..-||+- |+-+|+. |- ..- ..+.-.+-|+++||.++..+-|
T Consensus 80 GmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP 134 (240)
T COG1126 80 GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP 134 (240)
T ss_pred CeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc
Confidence 999999999965 9999995 31 112 2344567799999998866554
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.9e-20 Score=197.81 Aligned_cols=119 Identities=30% Similarity=0.433 Sum_probs=106.4
Q ss_pred EEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeE
Q 000720 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1333)
Q Consensus 1208 I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isi 1287 (1333)
|+|+||+++|.+ ..+++|+||+|++||.+.++|+|||||||+++++.|++||++|+|+|||.||++++...||++|||
T Consensus 2 I~~~nvsk~y~~--~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 2 IEFENVSKRYGN--KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred ceeeeeehhcCC--ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence 799999999973 359999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccccc-cchhhhcC--CC-C----CCCHHHHHHHHHhCCCCcccc
Q 000720 1288 IPQDPMLFQ-GTVRTNLD--PL-E----QHSDQEIWEVKISKLLTHKSY 1328 (1333)
Q Consensus 1288 VpQdp~LF~-GTIR~NLd--p~-~----~~sDeeI~~aL~~~~L~~~~~ 1328 (1333)
|-|.--||. -||.+||. |. . +.-++.+.|-|+.+||....+
T Consensus 80 viQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~ 128 (309)
T COG1125 80 VIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEY 128 (309)
T ss_pred hhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 999999995 59999996 32 1 223566888999999976533
|
|
| >PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-16 Score=178.85 Aligned_cols=268 Identities=18% Similarity=0.240 Sum_probs=204.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 278 ALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLI 357 (1333)
Q Consensus 278 ~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~rir~~l~~~i 357 (1333)
+...++.++..++..+.|+++..+++.+.++... .....+.++..+++..++.......+.+...+.+.+++..+...+
T Consensus 2 ~l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 80 (275)
T PF00664_consen 2 FLAILLSILSGLLSLLFPLLLGQIIDSLSSGNSD-NNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKRL 80 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTSC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888889999999999987665432 222255555555555556666666677778899999999999999
Q ss_pred HHHHhccccC---CCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 000720 358 YKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTP 434 (1333)
Q Consensus 358 y~K~L~ls~~---~~~~G~i~nlms~D~~~i~~~~~~~~~~w~~plqi~~~l~lL~~~lG~~a~l~gl~~~~~~~~~~~~ 434 (1333)
|+|.++.+.. ..++|+++|.+++|++++.+........+..++...++...+...++|..++..+++.++..++...
T Consensus 81 ~~~~~~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~ 160 (275)
T PF00664_consen 81 FEKLLRLPYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFISWKLALILLIILPLLFLISFI 160 (275)
T ss_dssp HHHHHHSHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhhcccccccccccccccccccccccccccccccchhhhhhhcccccccccccccchhhhhhHhhhhh
Confidence 9999998765 2389999999999999999988765555554444444333333355656677777777788888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-HH
Q 000720 435 LANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWAS-PT-LV 512 (1333)
Q Consensus 435 ~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~a~~~~~~~~~-p~-lv 512 (1333)
+.++.++..++..++.+++.+.++|.++|+|+||.|++|+.+.++.++.+++..+..++............... .. .+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (275)
T PF00664_consen 161 FSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYLSIV 240 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887766665555444444333333222 22 34
Q ss_pred HHHHHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHH
Q 000720 513 SVITFGVCI-LLKTPLTSGAVLSALATFRILQEPI 546 (1333)
Q Consensus 513 ~~~tF~~~~-~~~~~Lt~~~vft~lalf~~l~~pl 546 (1333)
.++.++.+. ...+.++++.+++.+.++..+..|+
T Consensus 241 ~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~pl 275 (275)
T PF00664_consen 241 LILIFGAYLSVINGQISIGTLVAFLSLSSQLINPL 275 (275)
T ss_dssp HHHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhhC
Confidence 456678887 7889999999999999999999986
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A. |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.5e-20 Score=194.26 Aligned_cols=122 Identities=29% Similarity=0.429 Sum_probs=107.1
Q ss_pred cEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCC---hHHHhh
Q 000720 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG---LQDLRS 1283 (1333)
Q Consensus 1207 ~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~---l~~LRs 1283 (1333)
.|+++||+.+|+.+ ..+|+||||+|++||.|||+|+||||||||+.+|-|+.+|++|+|.++|.+|..+. ++++|+
T Consensus 3 ~i~~~nl~k~yp~~-~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 3 MIEVKNLSKTYPGG-HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred eEEEeeeeeecCCC-ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 58999999999754 45999999999999999999999999999999999999999999999999999998 778899
Q ss_pred cCeEeccccccccc-chhhhcCC------------CCCCCH---HHHHHHHHhCCCCccccc
Q 000720 1284 RLSIIPQDPMLFQG-TVRTNLDP------------LEQHSD---QEIWEVKISKLLTHKSYQ 1329 (1333)
Q Consensus 1284 ~isiVpQdp~LF~G-TIR~NLdp------------~~~~sD---eeI~~aL~~~~L~~~~~~ 1329 (1333)
++|+|.|.|-|-.. |+-+|+.- |+-++. .+..+||+++++.++.++
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~q 143 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQ 143 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHH
Confidence 99999999998865 89999841 234443 458899999999887554
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-19 Score=198.30 Aligned_cols=122 Identities=30% Similarity=0.488 Sum_probs=105.5
Q ss_pred EEEEEEEEEECCC---CCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCC---hHHH
Q 000720 1208 IELENLLVQYNPT---LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG---LQDL 1281 (1333)
Q Consensus 1208 I~f~nVsf~Y~~~---~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~---l~~L 1281 (1333)
|+|+||+..|... .+.+|+||||+|++||..||||+||||||||+.++-|+-+|++|+|.+||.||..++ +..+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 8999999999752 356999999999999999999999999999999999999999999999998888776 5556
Q ss_pred hhcCeEecccccccc-cchhhhcC-CCC--CCCH----HHHHHHHHhCCCCccccc
Q 000720 1282 RSRLSIIPQDPMLFQ-GTVRTNLD-PLE--QHSD----QEIWEVKISKLLTHKSYQ 1329 (1333)
Q Consensus 1282 Rs~isiVpQdp~LF~-GTIR~NLd-p~~--~~sD----eeI~~aL~~~~L~~~~~~ 1329 (1333)
|++||+|+|++-|++ -|+.+|+. |.. ..+. +.+.+.|+.+||.|+-..
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~ 137 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADR 137 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhcc
Confidence 789999999999997 79999997 542 2344 346789999999887543
|
|
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.9e-19 Score=193.01 Aligned_cols=158 Identities=17% Similarity=0.140 Sum_probs=106.3
Q ss_pred CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCC-----Cc----EEE---ECCeEEEEcCCCCCCCCCHHHHhccCCc
Q 000720 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRIS-----GA----AIK---VHGKKAYVPQSSWIQTGTIRENILFGKD 684 (1333)
Q Consensus 617 nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~-----G~----~i~---~~g~iayv~Q~~~i~~~Tv~enI~~g~~ 684 (1333)
++++.+| +.+|+||||||||||+.+|...+.... |. .+. ....+.+.+|+.-... |-. ..
T Consensus 16 ~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~-----~~~--~~ 87 (198)
T cd03276 16 QIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDA-----NPL--CV 87 (198)
T ss_pred EEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccC-----CcC--CH
Confidence 5666666 789999999999999999874322111 11 000 0123566666543322 100 00
Q ss_pred CCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHH----ccCCCEEEEeCCCCCCCHHHHHHHH
Q 000720 685 MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV----YSNSDVYIFDDPFSAVDAHTGTHLF 760 (1333)
Q Consensus 685 ~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl----~~~~~illLDEP~saLD~~~~~~l~ 760 (1333)
......+++++. .....+++.+||||||||++||||+ +.+|++++||||+++||+.....+.
T Consensus 88 ~~~~~~~~~l~~--------------~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~ 153 (198)
T cd03276 88 LSQDMARSFLTS--------------NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKIST 153 (198)
T ss_pred HHHHHHHHHhcc--------------ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHH
Confidence 011122222211 1223467889999999999999999 6999999999999999999988777
Q ss_pred HHHHHHHhC--C-CeEEEecCchhhhhcCCEEEEEeCCe
Q 000720 761 KQCLMGLLS--Q-KTVLYTTHQLEFLDAADLVLVMKDGK 796 (1333)
Q Consensus 761 ~~~~~~~~~--~-~TvIlvtH~~~~l~~aD~i~vl~~G~ 796 (1333)
+.+.+...+ + .|+|++||+++.+...|+|-+|+.|+
T Consensus 154 ~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~ 192 (198)
T cd03276 154 DLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMKD 192 (198)
T ss_pred HHHHHHHhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence 644443332 3 58999999999998889999998754
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.9e-19 Score=206.31 Aligned_cols=196 Identities=22% Similarity=0.369 Sum_probs=151.5
Q ss_pred CccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEEC--CeEEEE
Q 000720 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH--GKKAYV 664 (1333)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~--g~iayv 664 (1333)
...+++.+++|.|+.+ .. +.+++ ++.++--+..+++|+||+||||+++++.|+..|..|.+ .++ -+++|-
T Consensus 360 ~p~l~i~~V~f~y~p~-----~y-~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~-~~~~r~ri~~f 432 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPS-----EY-QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIV-GRHPRLRIKYF 432 (582)
T ss_pred CCeeEEEeeeccCCCc-----ch-hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCccccee-eecccceecch
Confidence 4569999999999865 22 67777 99999999999999999999999999999999999965 443 368999
Q ss_pred cCCC--CCC-CCCHHHHhc--c-CCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccC
Q 000720 665 PQSS--WIQ-TGTIRENIL--F-GKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSN 738 (1333)
Q Consensus 665 ~Q~~--~i~-~~Tv~enI~--~-g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~ 738 (1333)
.|.. |+. +.+.-|-.. | |. .++.|++-+...++..++..- ...+||||||-||++|.....+
T Consensus 433 ~Qhhvd~l~~~v~~vd~~~~~~pG~--~~ee~r~hl~~~Gl~g~la~~----------si~~LSGGQKsrvafA~~~~~~ 500 (582)
T KOG0062|consen 433 AQHHVDFLDKNVNAVDFMEKSFPGK--TEEEIRRHLGSFGLSGELALQ----------SIASLSGGQKSRVAFAACTWNN 500 (582)
T ss_pred hHhhhhHHHHHhHHHHHHHHhCCCC--CHHHHHHHHHhcCCCchhhhc----------cccccCCcchhHHHHHHHhcCC
Confidence 9974 422 112222221 1 22 456777777777777666542 2468999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhhc-CCEEEEEeCCeEEE-ccChHHH
Q 000720 739 SDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ-SGKYEDL 806 (1333)
Q Consensus 739 ~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~-~g~~~~l 806 (1333)
|.+|+|||||+.||.++-..+-+ .+.. +..||+||||.++++. |+.+.+.+||++.. .|+.++.
T Consensus 501 PhlLVLDEPTNhLD~dsl~AL~~----Al~~F~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ieg~~~~y 567 (582)
T KOG0062|consen 501 PHLLVLDEPTNHLDRDSLGALAK----ALKNFNGGVVLVSHDEEFISSLCKELWVVEDGKVTPIEGGIDKY 567 (582)
T ss_pred CcEEEecCCCccccHHHHHHHHH----HHHhcCCcEEEEECcHHHHhhcCceeEEEcCCcEEeeeccHHHH
Confidence 99999999999999988655433 2222 4679999999999986 99999999999963 4544443
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.1e-19 Score=198.04 Aligned_cols=197 Identities=21% Similarity=0.333 Sum_probs=143.6
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--eEEEEc
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVP 665 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--~iayv~ 665 (1333)
..+.+.|++|.|+.. .|..++ +|-|.--..++||||||.||||||++|+|.+.|.+|+. +-+. +||+..
T Consensus 585 PvLGlH~VtFgy~gq-------kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~-RKnhrL~iG~Fd 656 (807)
T KOG0066|consen 585 PVLGLHDVTFGYPGQ-------KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGEL-RKNHRLRIGWFD 656 (807)
T ss_pred CeeecccccccCCCC-------CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchh-hccceeeeechh
Confidence 457889999999864 678888 99999999999999999999999999999999999985 3222 589988
Q ss_pred CCCC--C-CCCCHHHHhc--cCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCC
Q 000720 666 QSSW--I-QTGTIRENIL--FGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSD 740 (1333)
Q Consensus 666 Q~~~--i-~~~Tv~enI~--~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ 740 (1333)
|+.- + ...|--|.+. |..++.+ -++.+-..+|... ..| -+...||||||.||++|---+..||
T Consensus 657 Qh~~E~L~~Eetp~EyLqr~FNlpyq~--ARK~LG~fGL~sH-------AHT---ikikdLSGGQKaRValaeLal~~PD 724 (807)
T KOG0066|consen 657 QHANEALNGEETPVEYLQRKFNLPYQE--ARKQLGTFGLASH-------AHT---IKIKDLSGGQKARVALAELALGGPD 724 (807)
T ss_pred hhhHHhhccccCHHHHHHHhcCCChHH--HHHHhhhhhhhhc-------cce---EeeeecCCcchHHHHHHHHhcCCCC
Confidence 8753 2 2347777775 3333322 2233333333211 112 2457899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcC-CEEEEEeCCeEE-EccChHHHHh
Q 000720 741 VYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAA-DLVLVMKDGKIE-QSGKYEDLIA 808 (1333)
Q Consensus 741 illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~a-D~i~vl~~G~i~-~~g~~~~l~~ 808 (1333)
|+||||||+.||.++...+-+ .++.. +..||+||||-..+... -..+|+++-.|- -.|+++++..
T Consensus 725 vlILDEPTNNLDIESIDALaE-AIney--~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdFeDYkk 791 (807)
T KOG0066|consen 725 VLILDEPTNNLDIESIDALAE-AINEY--NGGVIMVSHDERLIVETDCNLWVVENQGIDEIDGDFEDYKK 791 (807)
T ss_pred EEEecCCCCCcchhhHHHHHH-HHHhc--cCcEEEEecccceeeecCceEEEEccCChhhccccHHHHHH
Confidence 999999999999988665543 33332 45799999999887653 345666665553 3577766654
|
|
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.79 E-value=4e-19 Score=189.40 Aligned_cols=142 Identities=23% Similarity=0.246 Sum_probs=99.1
Q ss_pred cEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEE--CCeE--EEEcCCCCCCCCCHHHHhccCCcCCHHHHHHHHHHccc
Q 000720 624 SKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV--HGKK--AYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCAL 699 (1333)
Q Consensus 624 e~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~--~g~i--ayv~Q~~~i~~~Tv~enI~~g~~~~~~~~~~v~~~~~l 699 (1333)
.+.+|+||||||||+++.+|.=.+- |+.... .... .+-...++...+.|+ +.|
T Consensus 23 ~~~~i~G~NGsGKSnil~Ai~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~f------------------ 79 (178)
T cd03239 23 SFNAIVGPNGSGKSNIVDAICFVLG---GKAAKLRRGSLLFLAGGGVKAGINSASVE--ITF------------------ 79 (178)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcC---cccccccCcchhhhcccccCCCCceEEEE--EEE------------------
Confidence 3999999999999999999863221 111000 0000 011111111111111 111
Q ss_pred chHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEE
Q 000720 700 NQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY----SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLY 775 (1333)
Q Consensus 700 ~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~----~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIl 775 (1333)
..+...+|.|+.|++ ||||||||++|||++. .+|+++++|||+++||+.....+.+.+.+...+++|+|+
T Consensus 80 ~~~~~~~~~~~~~~~------LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIi 153 (178)
T cd03239 80 DKSYFLVLQGKVEQI------LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIV 153 (178)
T ss_pred ECceEEecCCcCccc------CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 222567889998877 9999999999999984 799999999999999999988777644333344689999
Q ss_pred ecCchhhhhcCCEEEEEeC
Q 000720 776 TTHQLEFLDAADLVLVMKD 794 (1333)
Q Consensus 776 vtH~~~~l~~aD~i~vl~~ 794 (1333)
+||+.+.+..+|+++.+..
T Consensus 154 iSH~~~~~~~adrvi~i~~ 172 (178)
T cd03239 154 ITLKKEMFENADKLIGVLF 172 (178)
T ss_pred EECCHHHHhhCCeEEEEEE
Confidence 9999998888999999964
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.8e-19 Score=197.59 Aligned_cols=120 Identities=22% Similarity=0.331 Sum_probs=103.0
Q ss_pred EEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChH---HHhhc
Q 000720 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQ---DLRSR 1284 (1333)
Q Consensus 1208 I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~---~LRs~ 1284 (1333)
|+++|++++|+.+..++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.|+.+.+.. .+|++
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 789999999964433599999999999999999999999999999999999999999999999999877644 47889
Q ss_pred CeEecccccccc-cchhhhcCCC----C---CCCHHHHHHHHHhCCCCccc
Q 000720 1285 LSIIPQDPMLFQ-GTVRTNLDPL----E---QHSDQEIWEVKISKLLTHKS 1327 (1333)
Q Consensus 1285 isiVpQdp~LF~-GTIR~NLdp~----~---~~sDeeI~~aL~~~~L~~~~ 1327 (1333)
++++||+|.+|. .|+++|+... + +..++++.++++.++|.+..
T Consensus 82 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 132 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKA 132 (216)
T ss_pred ceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhh
Confidence 999999999987 5999999631 1 12356789999999997643
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.8e-19 Score=199.37 Aligned_cols=118 Identities=30% Similarity=0.519 Sum_probs=104.0
Q ss_pred EEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeE
Q 000720 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1333)
Q Consensus 1208 I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isi 1287 (1333)
|+++|++++|+.+.+++|+|+||+|++||.+||+|++|||||||+++|.|++.|++|+|.+||.|+...+...+|+++++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 57999999996544459999999999999999999999999999999999999999999999999999888899999999
Q ss_pred ecccccccccchhhhcCCCC-CCCHHHHHHHHHhCCCCc
Q 000720 1288 IPQDPMLFQGTVRTNLDPLE-QHSDQEIWEVKISKLLTH 1325 (1333)
Q Consensus 1288 VpQdp~LF~GTIR~NLdp~~-~~sDeeI~~aL~~~~L~~ 1325 (1333)
+||+|.+|+.|+++||.... ..+.+++.++++..++.+
T Consensus 81 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~ 119 (237)
T cd03252 81 VLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHD 119 (237)
T ss_pred EcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHH
Confidence 99999999999999997543 345666777777666544
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.9e-19 Score=196.79 Aligned_cols=119 Identities=37% Similarity=0.592 Sum_probs=106.5
Q ss_pred ccEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcC
Q 000720 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1285 (1333)
Q Consensus 1206 G~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~i 1285 (1333)
|+|+++|++++|..+ .++|+|+||+|++||.+||+|++|||||||+++|.|+.+|++|+|.+||.++.+.+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~~-~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 1 GEIEFENVNFSYDEK-KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred CeEEEEEEEEecCCC-CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 579999999999633 3499999999999999999999999999999999999999999999999999998888999999
Q ss_pred eEecccccccccchhhhcCCCC-CCCHHHHHHHHHhCCCCc
Q 000720 1286 SIIPQDPMLFQGTVRTNLDPLE-QHSDQEIWEVKISKLLTH 1325 (1333)
Q Consensus 1286 siVpQdp~LF~GTIR~NLdp~~-~~sDeeI~~aL~~~~L~~ 1325 (1333)
+++||+|.+|++|+++|+.... ...++++.++++.+++.+
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~ 120 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHD 120 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHH
Confidence 9999999999999999997543 356677888888877643
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.8e-19 Score=203.36 Aligned_cols=119 Identities=26% Similarity=0.393 Sum_probs=105.1
Q ss_pred cEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCe
Q 000720 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1333)
Q Consensus 1207 ~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~is 1286 (1333)
-|+++||+++|+.+ .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+...+|++++
T Consensus 4 ~l~~~~l~~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 4 IIEVEDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred eEEEEEEEEEeCCC-CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 48999999999643 34999999999999999999999999999999999999999999999999999988899999999
Q ss_pred Eecccc--cccccchhhhcCCCC---CCC----HHHHHHHHHhCCCCcc
Q 000720 1287 IIPQDP--MLFQGTVRTNLDPLE---QHS----DQEIWEVKISKLLTHK 1326 (1333)
Q Consensus 1287 iVpQdp--~LF~GTIR~NLdp~~---~~s----DeeI~~aL~~~~L~~~ 1326 (1333)
++||+| .+|..|+++|+.... ..+ ++++.++|+.++|.+.
T Consensus 83 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~ 131 (274)
T PRK13647 83 LVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDF 131 (274)
T ss_pred EEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHH
Confidence 999999 688999999997421 122 3568899999999654
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=5e-19 Score=202.96 Aligned_cols=121 Identities=21% Similarity=0.324 Sum_probs=105.3
Q ss_pred cEEEEEEEEEECCC-CCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcC
Q 000720 1207 KIELENLLVQYNPT-LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1285 (1333)
Q Consensus 1207 ~I~f~nVsf~Y~~~-~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~i 1285 (1333)
.|+++||+++|+.. .+++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999642 24599999999999999999999999999999999999999999999999999998999999999
Q ss_pred eEecccc--cccccchhhhcCCCC---CCC----HHHHHHHHHhCCCCccc
Q 000720 1286 SIIPQDP--MLFQGTVRTNLDPLE---QHS----DQEIWEVKISKLLTHKS 1327 (1333)
Q Consensus 1286 siVpQdp--~LF~GTIR~NLdp~~---~~s----DeeI~~aL~~~~L~~~~ 1327 (1333)
++|||+| .++..||++||.... ..+ ++.+.++|++++|.+..
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~ 134 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFK 134 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHh
Confidence 9999998 466789999997421 122 35689999999997543
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.9e-19 Score=188.15 Aligned_cols=119 Identities=29% Similarity=0.505 Sum_probs=104.4
Q ss_pred ccEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChH---HHh
Q 000720 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQ---DLR 1282 (1333)
Q Consensus 1206 G~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~---~LR 1282 (1333)
-.|++++|+++|.. ..||+||||+|++||.+||+|+||||||||++++.|+..|++|+|.|||.||.+++-+ .+|
T Consensus 7 ~~I~vr~v~~~fG~--~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 7 PLIEVRGVTKSFGD--RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred ceEEEeeeeeecCC--EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 36999999999954 3599999999999999999999999999999999999999999999999999999875 459
Q ss_pred hcCeEeccccccccc-chhhhcC-CCCCC---CHHHHH----HHHHhCCCCcc
Q 000720 1283 SRLSIIPQDPMLFQG-TVRTNLD-PLEQH---SDQEIW----EVKISKLLTHK 1326 (1333)
Q Consensus 1283 s~isiVpQdp~LF~G-TIR~NLd-p~~~~---sDeeI~----~aL~~~~L~~~ 1326 (1333)
+++|++.|..-||+. ||+||+. |..+| +++++. .-|+.|||...
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~ 137 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGA 137 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChh
Confidence 999999999999977 9999997 66554 444443 45888998865
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.8e-19 Score=192.83 Aligned_cols=123 Identities=28% Similarity=0.391 Sum_probs=109.6
Q ss_pred cEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCC-CCChHHHhhcC
Q 000720 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDIS-MIGLQDLRSRL 1285 (1333)
Q Consensus 1207 ~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~-~i~l~~LRs~i 1285 (1333)
.|+++|++|+|.++ .++|+|+||+|++||.++|+|+||||||||+++|.+++.|++|.|.+||.|++ .-+...+|+++
T Consensus 3 ~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 3 MIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred eEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 58999999999877 66999999999999999999999999999999999999999999999999999 48999999999
Q ss_pred eEecccc--cccccchhhhcCCCC---CCCHH----HHHHHHHhCCCCcccccC
Q 000720 1286 SIIPQDP--MLFQGTVRTNLDPLE---QHSDQ----EIWEVKISKLLTHKSYQC 1330 (1333)
Q Consensus 1286 siVpQdp--~LF~GTIR~NLdp~~---~~sDe----eI~~aL~~~~L~~~~~~~ 1330 (1333)
|+|.|+| .+|..||.+.+.... ..+.+ .+.+||+.|+|.+.-...
T Consensus 82 G~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~ 135 (235)
T COG1122 82 GLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRP 135 (235)
T ss_pred EEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCC
Confidence 9999999 899999999997542 24443 478899999997664333
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1e-18 Score=196.32 Aligned_cols=116 Identities=34% Similarity=0.538 Sum_probs=104.6
Q ss_pred cEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCe
Q 000720 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1333)
Q Consensus 1207 ~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~is 1286 (1333)
.|+++|++++|.. .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+...+..++|++++
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 80 (241)
T PRK14250 3 EIEFKEVSYSSFG--KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIG 80 (241)
T ss_pred eEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEE
Confidence 4899999999953 34999999999999999999999999999999999999999999999999999888889999999
Q ss_pred EecccccccccchhhhcCCCC---CCCHHHHHHHHHhCCCC
Q 000720 1287 IIPQDPMLFQGTVRTNLDPLE---QHSDQEIWEVKISKLLT 1324 (1333)
Q Consensus 1287 iVpQdp~LF~GTIR~NLdp~~---~~sDeeI~~aL~~~~L~ 1324 (1333)
++||+|.+|++|+++|+.... ...++++.+.++.++|.
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~ 121 (241)
T PRK14250 81 MVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLN 121 (241)
T ss_pred EEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCC
Confidence 999999999999999997422 22356788999999995
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-18 Score=203.16 Aligned_cols=119 Identities=24% Similarity=0.293 Sum_probs=101.6
Q ss_pred ccEEEEEEEEEECCCC---CCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCC------
Q 000720 1206 GKIELENLLVQYNPTL---PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMI------ 1276 (1333)
Q Consensus 1206 G~I~f~nVsf~Y~~~~---p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i------ 1276 (1333)
.-|+++||+++|+... .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||+++.+.
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 3599999999996432 3599999999999999999999999999999999999999999999999999763
Q ss_pred ----------ChHHHhhcCeEecccc--cccccchhhhcCCCC---CCCH----HHHHHHHHhCCCC
Q 000720 1277 ----------GLQDLRSRLSIIPQDP--MLFQGTVRTNLDPLE---QHSD----QEIWEVKISKLLT 1324 (1333)
Q Consensus 1277 ----------~l~~LRs~isiVpQdp--~LF~GTIR~NLdp~~---~~sD----eeI~~aL~~~~L~ 1324 (1333)
+...+|+++++|||+| .+|++||++||.... ..++ +.+.+++++++|.
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~ 166 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLD 166 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCC
Confidence 4568899999999998 799999999996421 1233 3456789999986
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.3e-19 Score=195.77 Aligned_cols=117 Identities=32% Similarity=0.470 Sum_probs=102.6
Q ss_pred EEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhccc-----CCCCCeEEEcCEeCCCCC--hHH
Q 000720 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVV-----EPSGGRILIDGVDISMIG--LQD 1280 (1333)
Q Consensus 1208 I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~-----ep~~G~I~IDGvdI~~i~--l~~ 1280 (1333)
|+++||+++|+. . ++|+|+||+|++||++||+|++|||||||+++|.|++ +|++|+|.+||.++.+.+ ...
T Consensus 1 i~~~~l~~~~~~-~-~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (227)
T cd03260 1 IELRDLNVYYGD-K-HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLE 78 (227)
T ss_pred CEEEEEEEEcCC-c-eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHH
Confidence 578999999964 3 4999999999999999999999999999999999999 999999999999998877 677
Q ss_pred HhhcCeEecccccccccchhhhcCCCC---C-C----CHHHHHHHHHhCCCCcc
Q 000720 1281 LRSRLSIIPQDPMLFQGTVRTNLDPLE---Q-H----SDQEIWEVKISKLLTHK 1326 (1333)
Q Consensus 1281 LRs~isiVpQdp~LF~GTIR~NLdp~~---~-~----sDeeI~~aL~~~~L~~~ 1326 (1333)
+|++++++||+|.+|..|+++|+.... . . .++++.++++.++|.+.
T Consensus 79 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 132 (227)
T cd03260 79 LRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDE 132 (227)
T ss_pred HHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChH
Confidence 899999999999999889999996421 1 1 24578899999999754
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.4e-18 Score=175.03 Aligned_cols=199 Identities=22% Similarity=0.358 Sum_probs=147.3
Q ss_pred CCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCe-----
Q 000720 587 SDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK----- 660 (1333)
Q Consensus 587 ~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~----- 660 (1333)
++.+|++.+..|+|+.. .|..-| |++++.|....++|.|||||||||+++.|-.-.-.|. +.+.|+
T Consensus 10 ~~~aievsgl~f~y~~~-------dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~-v~VlgrsaFhD 81 (291)
T KOG2355|consen 10 SDFAIEVSGLQFKYKVS-------DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGV-VQVLGRSAFHD 81 (291)
T ss_pred ccceEEEeccEEecccC-------CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCe-EEEcCcCcccc
Confidence 46789999999999865 478889 9999999999999999999999999999976554444 355543
Q ss_pred --------EEEEcCC----------CCCC-CCCHHHHhccCCcC-CHHHHHHHHHHcccchHHHhhcCCCccccCCCCCC
Q 000720 661 --------KAYVPQS----------SWIQ-TGTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1333)
Q Consensus 661 --------iayv~Q~----------~~i~-~~Tv~enI~~g~~~-~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~ 720 (1333)
..|..-+ ..+| ..++. ...||-.. +.++.++.++.. +-|+. =+...
T Consensus 82 t~l~~Sgdl~YLGgeW~~~~~~agevplq~D~sae-~mifgV~g~dp~Rre~LI~iL--DIdl~-----------WRmHk 147 (291)
T KOG2355|consen 82 TSLESSGDLSYLGGEWSKTVGIAGEVPLQGDISAE-HMIFGVGGDDPERREKLIDIL--DIDLR-----------WRMHK 147 (291)
T ss_pred ccccccCceeEecccccccccccccccccccccHH-HHHhhccCCChhHhhhhhhhe--eccce-----------EEEee
Confidence 2333221 1122 22343 34454332 334545554422 11111 25678
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEecCchhhhhc-CCEEEEEeCCeEE
Q 000720 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE 798 (1333)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~-~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~ 798 (1333)
+|-|||+||+|+..|.+.=+++||||.|-.||.-.+..+.+-+.... .+|.|||+.||-.+=++. +.+++.|++|+++
T Consensus 148 vSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~ 227 (291)
T KOG2355|consen 148 VSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLV 227 (291)
T ss_pred ccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeee
Confidence 99999999999999999999999999999999988888876544333 468999999999887765 9999999999999
Q ss_pred EccChHHHH
Q 000720 799 QSGKYEDLI 807 (1333)
Q Consensus 799 ~~g~~~~l~ 807 (1333)
..-+++++.
T Consensus 228 ~~l~~~~i~ 236 (291)
T KOG2355|consen 228 DNLKYQKIK 236 (291)
T ss_pred eccccchhh
Confidence 866666554
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.77 E-value=9e-19 Score=191.74 Aligned_cols=106 Identities=25% Similarity=0.414 Sum_probs=95.5
Q ss_pred EEEEEEEEEECCCC---CCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhc
Q 000720 1208 IELENLLVQYNPTL---PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSR 1284 (1333)
Q Consensus 1208 I~f~nVsf~Y~~~~---p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~ 1284 (1333)
|+++||+++|.+.. +++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+|| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 57999999997542 3599999999999999999999999999999999999999999999999 6
Q ss_pred CeEecccccccccchhhhcCCCCCCCHHHHHHHHHhCCCCcc
Q 000720 1285 LSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVKISKLLTHK 1326 (1333)
Q Consensus 1285 isiVpQdp~LF~GTIR~NLdp~~~~sDeeI~~aL~~~~L~~~ 1326 (1333)
|+++||+|.+|++|+++|+.+....++++.+++++.+++.+.
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~ 109 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPD 109 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHHcCcHHH
Confidence 999999999999999999987656667788888888887543
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=9e-19 Score=197.44 Aligned_cols=116 Identities=21% Similarity=0.307 Sum_probs=102.8
Q ss_pred cEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccC---CCCCeEEEcCEeCCCCChHHHhh
Q 000720 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE---PSGGRILIDGVDISMIGLQDLRS 1283 (1333)
Q Consensus 1207 ~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~e---p~~G~I~IDGvdI~~i~l~~LRs 1283 (1333)
.|+++|++++|+. +++|+|+||+|++||.+||+|++|||||||+++|.|+++ |++|+|.+||.|+.+.+...+|+
T Consensus 2 ~~~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 79 (246)
T PRK14269 2 IAKTTNLNLFYGK--KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79 (246)
T ss_pred ceeeeeeEEEECC--EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhh
Confidence 4789999999963 359999999999999999999999999999999999985 68999999999999998889999
Q ss_pred cCeEecccccccccchhhhcCCCC---------CCCHHHHHHHHHhCCCC
Q 000720 1284 RLSIIPQDPMLFQGTVRTNLDPLE---------QHSDQEIWEVKISKLLT 1324 (1333)
Q Consensus 1284 ~isiVpQdp~LF~GTIR~NLdp~~---------~~sDeeI~~aL~~~~L~ 1324 (1333)
+++++||+|.+|..|+++|+.... +..++++.++++.++|.
T Consensus 80 ~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 129 (246)
T PRK14269 80 NVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLF 129 (246)
T ss_pred hEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCC
Confidence 999999999999999999996421 11234688999999995
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.8e-18 Score=191.77 Aligned_cols=121 Identities=33% Similarity=0.528 Sum_probs=107.4
Q ss_pred ccEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcC
Q 000720 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1285 (1333)
Q Consensus 1206 G~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~i 1285 (1333)
|+|+++|++++|+....++|+|+||+|++||.+||+|++|||||||+++|.|+.+|++|+|.+||.++.+.+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred CeEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 57999999999964323599999999999999999999999999999999999999999999999999988888889999
Q ss_pred eEecccccccccchhhhcCCC-CCCCHHHHHHHHHhCCCCcc
Q 000720 1286 SIIPQDPMLFQGTVRTNLDPL-EQHSDQEIWEVKISKLLTHK 1326 (1333)
Q Consensus 1286 siVpQdp~LF~GTIR~NLdp~-~~~sDeeI~~aL~~~~L~~~ 1326 (1333)
+++||+|.+|..|+++|+... ...+++++.++++..++.+.
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~ 122 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDF 122 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHH
Confidence 999999999999999999754 23456678888999888653
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-18 Score=200.98 Aligned_cols=117 Identities=32% Similarity=0.484 Sum_probs=101.7
Q ss_pred EEEEEEEEEECCCC---CCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCC--hHHHh
Q 000720 1208 IELENLLVQYNPTL---PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG--LQDLR 1282 (1333)
Q Consensus 1208 I~f~nVsf~Y~~~~---p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~--l~~LR 1282 (1333)
|+++||+++|++.. .++|+||||+|++||++||+|++|||||||+++|.|+.+|++|+|.+||.++++.+ ...+|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 79999999996432 35999999999999999999999999999999999999999999999999998754 46889
Q ss_pred hcCeEecccc--cccccchhhhcCCCC---CCCH----HHHHHHHHhCCCC
Q 000720 1283 SRLSIIPQDP--MLFQGTVRTNLDPLE---QHSD----QEIWEVKISKLLT 1324 (1333)
Q Consensus 1283 s~isiVpQdp--~LF~GTIR~NLdp~~---~~sD----eeI~~aL~~~~L~ 1324 (1333)
+++++|||+| .+|+.|+++||.... ..++ +++.++|+.++|.
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~ 133 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLD 133 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCC
Confidence 9999999998 578999999996321 2333 4578999999996
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.6e-19 Score=193.57 Aligned_cols=119 Identities=28% Similarity=0.359 Sum_probs=101.3
Q ss_pred EEEEEEEEEECCCC--CCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHH----H
Q 000720 1208 IELENLLVQYNPTL--PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD----L 1281 (1333)
Q Consensus 1208 I~f~nVsf~Y~~~~--p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~----L 1281 (1333)
|+++||+++|+++. .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.+.+.+. .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 57899999996431 35999999999999999999999999999999999999999999999999998887543 4
Q ss_pred hhcCeEeccccccccc-chhhhcCCC---CCC----CHHHHHHHHHhCCCCcc
Q 000720 1282 RSRLSIIPQDPMLFQG-TVRTNLDPL---EQH----SDQEIWEVKISKLLTHK 1326 (1333)
Q Consensus 1282 Rs~isiVpQdp~LF~G-TIR~NLdp~---~~~----sDeeI~~aL~~~~L~~~ 1326 (1333)
|++++++||+|.+|.+ |+++|+... ... .++++.++++..+|.+.
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 133 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDR 133 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchh
Confidence 6789999999999987 999999642 111 24578899999999653
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-18 Score=203.66 Aligned_cols=120 Identities=27% Similarity=0.445 Sum_probs=103.2
Q ss_pred EEEEEEEEEECCC--CCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHH---Hh
Q 000720 1208 IELENLLVQYNPT--LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD---LR 1282 (1333)
Q Consensus 1208 I~f~nVsf~Y~~~--~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~---LR 1282 (1333)
|+++||+++|+.+ ..++|+|+||+|++||.+||+|+||||||||+++|.|+.+|++|+|.+||.||.+++..+ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 7899999999632 235999999999999999999999999999999999999999999999999999987655 58
Q ss_pred hcCeEecccccccc-cchhhhcC-CC--CCCC----HHHHHHHHHhCCCCccc
Q 000720 1283 SRLSIIPQDPMLFQ-GTVRTNLD-PL--EQHS----DQEIWEVKISKLLTHKS 1327 (1333)
Q Consensus 1283 s~isiVpQdp~LF~-GTIR~NLd-p~--~~~s----DeeI~~aL~~~~L~~~~ 1327 (1333)
++|++|||++.+|. .|+++|+. |. ...+ ++++.++|+.++|.+..
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~ 134 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKH 134 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh
Confidence 89999999999995 79999996 22 1122 34578999999997653
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-18 Score=195.09 Aligned_cols=120 Identities=25% Similarity=0.380 Sum_probs=102.6
Q ss_pred cEEEEEEEEEECCCC--CCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHH---H
Q 000720 1207 KIELENLLVQYNPTL--PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD---L 1281 (1333)
Q Consensus 1207 ~I~f~nVsf~Y~~~~--p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~---L 1281 (1333)
-++++||+++|+.+. .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+.+++.+. +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999996432 35999999999999999999999999999999999999999999999999999988754 3
Q ss_pred h-hcCeEeccccccccc-chhhhcCC---CCCC----CHHHHHHHHHhCCCCcc
Q 000720 1282 R-SRLSIIPQDPMLFQG-TVRTNLDP---LEQH----SDQEIWEVKISKLLTHK 1326 (1333)
Q Consensus 1282 R-s~isiVpQdp~LF~G-TIR~NLdp---~~~~----sDeeI~~aL~~~~L~~~ 1326 (1333)
| ++++++||+|.+|.+ |+++|+.. .... .++++.++|+.++|.+.
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~ 138 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHR 138 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchh
Confidence 3 679999999999976 99999853 1111 23568899999999654
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.5e-19 Score=194.28 Aligned_cols=118 Identities=25% Similarity=0.321 Sum_probs=100.7
Q ss_pred EEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeE
Q 000720 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1333)
Q Consensus 1208 I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isi 1287 (1333)
|+++||+++|..+..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.... .++|+++++
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhhhEEE
Confidence 5799999999643245999999999999999999999999999999999999999999999999997653 678889999
Q ss_pred eccccccc-ccchhhhcCCCC---CC----CHHHHHHHHHhCCCCcc
Q 000720 1288 IPQDPMLF-QGTVRTNLDPLE---QH----SDQEIWEVKISKLLTHK 1326 (1333)
Q Consensus 1288 VpQdp~LF-~GTIR~NLdp~~---~~----sDeeI~~aL~~~~L~~~ 1326 (1333)
+||+|.+| +.|+++|+.... .. .++++.++++.++|.+.
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 126 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDK 126 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH
Confidence 99999999 679999996311 11 23568899999999653
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-18 Score=184.91 Aligned_cols=96 Identities=32% Similarity=0.646 Sum_probs=90.6
Q ss_pred EEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeE
Q 000720 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1333)
Q Consensus 1208 I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isi 1287 (1333)
|+++|++++|+.+..++++|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+.+.+|+++++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 57999999997543459999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccccccchhhhc
Q 000720 1288 IPQDPMLFQGTVRTNL 1303 (1333)
Q Consensus 1288 VpQdp~LF~GTIR~NL 1303 (1333)
+||+|.+|++|+++|+
T Consensus 81 ~~q~~~~~~~tv~~~l 96 (173)
T cd03246 81 LPQDDELFSGSIAENI 96 (173)
T ss_pred ECCCCccccCcHHHHC
Confidence 9999999999999995
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-18 Score=194.14 Aligned_cols=118 Identities=40% Similarity=0.661 Sum_probs=105.8
Q ss_pred EEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeE
Q 000720 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1333)
Q Consensus 1208 I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isi 1287 (1333)
|+++|++++|+.+. .+|+|+||+|++||.+||+|++|||||||+++|.|+.+|++|+|.+||.++++.+...+|+.+++
T Consensus 1 l~~~~l~~~~~~~~-~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 79 (236)
T cd03253 1 IEFENVTFAYDPGR-PVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGV 79 (236)
T ss_pred CEEEEEEEEeCCCC-ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 57999999996443 49999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccccccchhhhcCCC-CCCCHHHHHHHHHhCCCCcc
Q 000720 1288 IPQDPMLFQGTVRTNLDPL-EQHSDQEIWEVKISKLLTHK 1326 (1333)
Q Consensus 1288 VpQdp~LF~GTIR~NLdp~-~~~sDeeI~~aL~~~~L~~~ 1326 (1333)
+||+|.+|++|+++|+... ...+++++.++++.+++.+.
T Consensus 80 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~ 119 (236)
T cd03253 80 VPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDK 119 (236)
T ss_pred ECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHH
Confidence 9999999999999999754 34567788888888777543
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.7e-18 Score=192.73 Aligned_cols=102 Identities=30% Similarity=0.543 Sum_probs=94.5
Q ss_pred CcccEEEEEEEEEECCC-CCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHh
Q 000720 1204 SSGKIELENLLVQYNPT-LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLR 1282 (1333)
Q Consensus 1204 ~~G~I~f~nVsf~Y~~~-~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LR 1282 (1333)
..|.|+++|++++|+.. ..++|+|+||+|++||.+||+|++|||||||+++|.|+.+|++|+|.+||.++...+....|
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 35789999999999642 23599999999999999999999999999999999999999999999999999988888889
Q ss_pred hcCeEecccccccccchhhhcCC
Q 000720 1283 SRLSIIPQDPMLFQGTVRTNLDP 1305 (1333)
Q Consensus 1283 s~isiVpQdp~LF~GTIR~NLdp 1305 (1333)
++++++||+|.+|++|+++|++.
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~ 110 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAY 110 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhcc
Confidence 99999999999999999999984
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=99.76 E-value=1e-18 Score=192.81 Aligned_cols=118 Identities=25% Similarity=0.353 Sum_probs=102.2
Q ss_pred EEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChH---HHhhc
Q 000720 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQ---DLRSR 1284 (1333)
Q Consensus 1208 I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~---~LRs~ 1284 (1333)
|+++|++++|+.+ ..+|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+.+++.. .+|++
T Consensus 2 l~~~~l~~~~~~~-~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 2 IEFHNVSKAYPGG-VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred EEEEeeeEEeCCC-ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 7899999999533 3599999999999999999999999999999999999999999999999999987654 47889
Q ss_pred CeEecccccccc-cchhhhcCCC----C---CCCHHHHHHHHHhCCCCcc
Q 000720 1285 LSIIPQDPMLFQ-GTVRTNLDPL----E---QHSDQEIWEVKISKLLTHK 1326 (1333)
Q Consensus 1285 isiVpQdp~LF~-GTIR~NLdp~----~---~~sDeeI~~aL~~~~L~~~ 1326 (1333)
++++||+|.+|. .|+++|+... + +..+++++++++..+|.+.
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 130 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHK 130 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhh
Confidence 999999999996 6999999632 1 1235678999999999754
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-18 Score=198.91 Aligned_cols=120 Identities=22% Similarity=0.300 Sum_probs=104.8
Q ss_pred cEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCe
Q 000720 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1333)
Q Consensus 1207 ~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~is 1286 (1333)
-|+++||+++|+...+++|+|+||+|++||.+||+|++|||||||+++|.|+.+|++|+|.+||.|+.+.+...+|++|+
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 48999999999643445999999999999999999999999999999999999999999999999999988888999999
Q ss_pred Eecccc--cccccchhhhcCCCC---CCC----HHHHHHHHHhCCCCcc
Q 000720 1287 IIPQDP--MLFQGTVRTNLDPLE---QHS----DQEIWEVKISKLLTHK 1326 (1333)
Q Consensus 1287 iVpQdp--~LF~GTIR~NLdp~~---~~s----DeeI~~aL~~~~L~~~ 1326 (1333)
++||+| .+++.|+++||.... ..+ ++++.++|+.++|.+.
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~ 133 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDF 133 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhh
Confidence 999998 567889999996421 123 3457889999999654
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-18 Score=191.81 Aligned_cols=118 Identities=32% Similarity=0.514 Sum_probs=102.4
Q ss_pred cEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCe
Q 000720 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1333)
Q Consensus 1207 ~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~is 1286 (1333)
.++.+|++|+|.. .++|+|+||+|++||.++|+||+|||||||+++|.|+..|.+|+|.+||.||.+++..++-++++
T Consensus 2 ~L~~~~ls~~y~~--~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia 79 (258)
T COG1120 2 MLEVENLSFGYGG--KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLA 79 (258)
T ss_pred eeEEEEEEEEECC--eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEE
Confidence 4789999999973 35999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Eecccc-cccccchhhhcC----C----CCCCC--HH-HHHHHHHhCCCCcc
Q 000720 1287 IIPQDP-MLFQGTVRTNLD----P----LEQHS--DQ-EIWEVKISKLLTHK 1326 (1333)
Q Consensus 1287 iVpQdp-~LF~GTIR~NLd----p----~~~~s--De-eI~~aL~~~~L~~~ 1326 (1333)
+|||++ .-|.-||+|=+. | +...+ |+ .+.+||+.+++.+.
T Consensus 80 ~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~l 131 (258)
T COG1120 80 YVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHL 131 (258)
T ss_pred EeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHH
Confidence 999996 456669988764 3 22223 33 57788999998764
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-18 Score=199.77 Aligned_cols=118 Identities=25% Similarity=0.397 Sum_probs=101.3
Q ss_pred cEEEEEEEEEECCCC---CCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCC----ChH
Q 000720 1207 KIELENLLVQYNPTL---PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMI----GLQ 1279 (1333)
Q Consensus 1207 ~I~f~nVsf~Y~~~~---p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i----~l~ 1279 (1333)
.|+++||+++|+++. +++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++... +..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 389999999996432 3599999999999999999999999999999999999999999999999999764 356
Q ss_pred HHhhcCeEecccc--cccccchhhhcCCCC---CCC----HHHHHHHHHhCCCC
Q 000720 1280 DLRSRLSIIPQDP--MLFQGTVRTNLDPLE---QHS----DQEIWEVKISKLLT 1324 (1333)
Q Consensus 1280 ~LRs~isiVpQdp--~LF~GTIR~NLdp~~---~~s----DeeI~~aL~~~~L~ 1324 (1333)
.+|++|++|||+| .+|+.|+++||.... ..+ ++.+.++|+.++|.
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~ 135 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFS 135 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCC
Confidence 7899999999998 689999999996321 123 34567899999996
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-18 Score=194.08 Aligned_cols=117 Identities=32% Similarity=0.441 Sum_probs=101.2
Q ss_pred EEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCCh---HHHhhc
Q 000720 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGL---QDLRSR 1284 (1333)
Q Consensus 1208 I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l---~~LRs~ 1284 (1333)
|+++|++++|.. . ++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.+.+. ..+|++
T Consensus 1 l~~~~l~~~~~~-~-~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 78 (235)
T cd03261 1 IELRGLTKSFGG-R-TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRR 78 (235)
T ss_pred CeEEEEEEEECC-E-EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcc
Confidence 578999999953 3 49999999999999999999999999999999999999999999999999988764 567899
Q ss_pred CeEeccccccccc-chhhhcCCC----CCCC----HHHHHHHHHhCCCCcc
Q 000720 1285 LSIIPQDPMLFQG-TVRTNLDPL----EQHS----DQEIWEVKISKLLTHK 1326 (1333)
Q Consensus 1285 isiVpQdp~LF~G-TIR~NLdp~----~~~s----DeeI~~aL~~~~L~~~ 1326 (1333)
+++|||+|.+|.+ |+++|+... ...+ ++++.++|++++|.+.
T Consensus 79 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 129 (235)
T cd03261 79 MGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGA 129 (235)
T ss_pred eEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchh
Confidence 9999999999986 999999632 1122 3457889999999654
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.3e-18 Score=191.35 Aligned_cols=117 Identities=26% Similarity=0.331 Sum_probs=104.6
Q ss_pred cEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCe
Q 000720 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1333)
Q Consensus 1207 ~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~is 1286 (1333)
.|+++||+++|.. . ++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+...+|++++
T Consensus 7 ~i~~~~l~~~~~~-~-~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 7 LLQLQNVGYLAGD-A-KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred eEEEeccEEeeCC-c-eeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 5999999999953 3 4999999999999999999999999999999999999999999999999999998888999999
Q ss_pred EecccccccccchhhhcCC----CCC-CCHHHHHHHHHhCCCCc
Q 000720 1287 IIPQDPMLFQGTVRTNLDP----LEQ-HSDQEIWEVKISKLLTH 1325 (1333)
Q Consensus 1287 iVpQdp~LF~GTIR~NLdp----~~~-~sDeeI~~aL~~~~L~~ 1325 (1333)
++||+|.+|+.|+++|+.. ... ..++++.++|++++|.+
T Consensus 85 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~ 128 (225)
T PRK10247 85 YCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPD 128 (225)
T ss_pred EEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCCh
Confidence 9999999999999999963 111 23456789999999964
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-18 Score=191.49 Aligned_cols=118 Identities=22% Similarity=0.355 Sum_probs=101.2
Q ss_pred EEEEEEEEEECCCC--CCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcC
Q 000720 1208 IELENLLVQYNPTL--PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1285 (1333)
Q Consensus 1208 I~f~nVsf~Y~~~~--p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~i 1285 (1333)
|+++||+++|+... +++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.. ...++|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 78999999996431 259999999999999999999999999999999999999999999999999986 456789999
Q ss_pred eEeccccccccc-chhhhcCCC---CC----CCHHHHHHHHHhCCCCcc
Q 000720 1286 SIIPQDPMLFQG-TVRTNLDPL---EQ----HSDQEIWEVKISKLLTHK 1326 (1333)
Q Consensus 1286 siVpQdp~LF~G-TIR~NLdp~---~~----~sDeeI~~aL~~~~L~~~ 1326 (1333)
+++||+|.+|.+ |+++|+... .. ..++++.+++++.+|.+.
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 129 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEEL 129 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH
Confidence 999999999986 999999521 11 124578889999999653
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.4e-18 Score=192.60 Aligned_cols=117 Identities=32% Similarity=0.509 Sum_probs=102.2
Q ss_pred EEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeE
Q 000720 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1333)
Q Consensus 1208 I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isi 1287 (1333)
|+++|++++|.....++|+|+||++++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+...+|+++++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 57999999996443359999999999999999999999999999999999999999999999999998888899999999
Q ss_pred ecccccccccchhhhcCCC-CCCCHHHHHHHHHhCCCC
Q 000720 1288 IPQDPMLFQGTVRTNLDPL-EQHSDQEIWEVKISKLLT 1324 (1333)
Q Consensus 1288 VpQdp~LF~GTIR~NLdp~-~~~sDeeI~~aL~~~~L~ 1324 (1333)
+||+|.+|++|+++|+... ..++.+++.++++.+++.
T Consensus 81 ~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~ 118 (234)
T cd03251 81 VSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAH 118 (234)
T ss_pred eCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcH
Confidence 9999999999999999754 234556666666665554
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-18 Score=192.49 Aligned_cols=118 Identities=26% Similarity=0.356 Sum_probs=101.3
Q ss_pred EEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCCh---HHHhhc
Q 000720 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGL---QDLRSR 1284 (1333)
Q Consensus 1208 I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l---~~LRs~ 1284 (1333)
|+++|++++|+.+ +.+|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.|+.+.+. ...|++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 79 (214)
T cd03292 1 IEFINVTKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK 79 (214)
T ss_pred CEEEEEEEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence 4789999999643 359999999999999999999999999999999999999999999999999988764 357889
Q ss_pred CeEeccccccccc-chhhhcCCC---CCC----CHHHHHHHHHhCCCCcc
Q 000720 1285 LSIIPQDPMLFQG-TVRTNLDPL---EQH----SDQEIWEVKISKLLTHK 1326 (1333)
Q Consensus 1285 isiVpQdp~LF~G-TIR~NLdp~---~~~----sDeeI~~aL~~~~L~~~ 1326 (1333)
+++|||+|.+|.+ |+++|+... ... .++++.++++.++|.+.
T Consensus 80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 129 (214)
T cd03292 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHK 129 (214)
T ss_pred eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999985 999999632 111 24568899999998654
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.1e-18 Score=188.97 Aligned_cols=115 Identities=24% Similarity=0.356 Sum_probs=98.8
Q ss_pred EEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeEe
Q 000720 1209 ELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSII 1288 (1333)
Q Consensus 1209 ~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isiV 1288 (1333)
+++|++++|+.+ ..+|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.. ...|++++++
T Consensus 1 ~~~~l~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~ 76 (205)
T cd03226 1 RIENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYV 76 (205)
T ss_pred CcccEEEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEE
Confidence 468999999642 359999999999999999999999999999999999999999999999999864 5678899999
Q ss_pred cccc--cccccchhhhcCCCC---CCCHHHHHHHHHhCCCCccc
Q 000720 1289 PQDP--MLFQGTVRTNLDPLE---QHSDQEIWEVKISKLLTHKS 1327 (1333)
Q Consensus 1289 pQdp--~LF~GTIR~NLdp~~---~~sDeeI~~aL~~~~L~~~~ 1327 (1333)
||+| .+|+.|+++|+.... ...++++.++|++++|.+..
T Consensus 77 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~ 120 (205)
T cd03226 77 MQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALK 120 (205)
T ss_pred ecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhc
Confidence 9998 478899999997431 12346799999999997643
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.7e-18 Score=196.28 Aligned_cols=120 Identities=26% Similarity=0.407 Sum_probs=103.2
Q ss_pred cEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCe
Q 000720 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1333)
Q Consensus 1207 ~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~is 1286 (1333)
.|+++|++++|+.+.+++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+.+.+...+|++++
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 86 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence 58999999999643445999999999999999999999999999999999999999999999999999888889999999
Q ss_pred Eecccc--cccccchhhhcCCC---CCCCHH----HHHHHHHhCCCCcc
Q 000720 1287 IIPQDP--MLFQGTVRTNLDPL---EQHSDQ----EIWEVKISKLLTHK 1326 (1333)
Q Consensus 1287 iVpQdp--~LF~GTIR~NLdp~---~~~sDe----eI~~aL~~~~L~~~ 1326 (1333)
++||+| .++..|+++||... ...+++ .+.+++++.+|.+.
T Consensus 87 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 135 (271)
T PRK13632 87 IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDY 135 (271)
T ss_pred EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHH
Confidence 999998 45678999999642 122333 36778899998643
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.1e-18 Score=193.85 Aligned_cols=118 Identities=31% Similarity=0.431 Sum_probs=101.7
Q ss_pred EEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCC---hHHHhhc
Q 000720 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG---LQDLRSR 1284 (1333)
Q Consensus 1208 I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~---l~~LRs~ 1284 (1333)
++++||+++|..+ ..+|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+...+ ...+|++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 1 IEVENLSKTYPNG-KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ 79 (241)
T ss_pred CEEeeEEEecCCc-cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhc
Confidence 4789999999642 34999999999999999999999999999999999999999999999999999887 5678999
Q ss_pred CeEecccccccc-cchhhhcCCC------------C---CCCHHHHHHHHHhCCCCcc
Q 000720 1285 LSIIPQDPMLFQ-GTVRTNLDPL------------E---QHSDQEIWEVKISKLLTHK 1326 (1333)
Q Consensus 1285 isiVpQdp~LF~-GTIR~NLdp~------------~---~~sDeeI~~aL~~~~L~~~ 1326 (1333)
++++||++.+|. .|+++|+... + +..++++.++|+.++|.+.
T Consensus 80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 137 (241)
T cd03256 80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDK 137 (241)
T ss_pred cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhh
Confidence 999999999887 6999999521 1 1224568889999999653
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.4e-18 Score=184.17 Aligned_cols=95 Identities=38% Similarity=0.606 Sum_probs=88.4
Q ss_pred EEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeE
Q 000720 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1333)
Q Consensus 1208 I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isi 1287 (1333)
|+++|++++|+...+++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+. ...+|+++++
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEE
Confidence 579999999965434599999999999999999999999999999999999999999999999999877 6788999999
Q ss_pred ecccccccccchhhhc
Q 000720 1288 IPQDPMLFQGTVRTNL 1303 (1333)
Q Consensus 1288 VpQdp~LF~GTIR~NL 1303 (1333)
+||+|.+|++|+++|+
T Consensus 80 ~~q~~~~~~~tv~~~i 95 (178)
T cd03247 80 LNQRPYLFDTTLRNNL 95 (178)
T ss_pred EccCCeeecccHHHhh
Confidence 9999999999999996
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3e-18 Score=195.89 Aligned_cols=116 Identities=28% Similarity=0.399 Sum_probs=104.1
Q ss_pred cEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCe
Q 000720 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1333)
Q Consensus 1207 ~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~is 1286 (1333)
.|+++||+.+|.+.. ||+|+|++|+.||.+++||||||||||+++++.||.+|++|+|.|||.|++++++.+ ++|+
T Consensus 3 ~i~l~~v~K~yg~~~--~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~ia 78 (338)
T COG3839 3 ELELKNVRKSFGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGIA 78 (338)
T ss_pred EEEEeeeEEEcCCce--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCEE
Confidence 689999999997543 999999999999999999999999999999999999999999999999999999988 8999
Q ss_pred Eeccccccccc-chhhhcCCC-C------CCCHHHHHHHHHhCCCCcc
Q 000720 1287 IIPQDPMLFQG-TVRTNLDPL-E------QHSDQEIWEVKISKLLTHK 1326 (1333)
Q Consensus 1287 iVpQdp~LF~G-TIR~NLdp~-~------~~sDeeI~~aL~~~~L~~~ 1326 (1333)
+|+|+..||+- ||++||... . +--|+++.++++..+|.+.
T Consensus 79 mVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~l 126 (338)
T COG3839 79 MVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHL 126 (338)
T ss_pred EEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhH
Confidence 99999999976 999999743 2 1236778899999888764
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.4e-18 Score=193.05 Aligned_cols=118 Identities=36% Similarity=0.608 Sum_probs=103.2
Q ss_pred EEEEEEEEEECCC-CCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCe
Q 000720 1208 IELENLLVQYNPT-LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1333)
Q Consensus 1208 I~f~nVsf~Y~~~-~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~is 1286 (1333)
|+++|++++|... ..++|+|+||++++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+....|++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 4789999999642 235999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EecccccccccchhhhcCCC-CCCCHHHHHHHHHhCCCCc
Q 000720 1287 IIPQDPMLFQGTVRTNLDPL-EQHSDQEIWEVKISKLLTH 1325 (1333)
Q Consensus 1287 iVpQdp~LF~GTIR~NLdp~-~~~sDeeI~~aL~~~~L~~ 1325 (1333)
++||+|.+|++|+++|+... ...+.+++.+.++.+++.+
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~ 120 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHD 120 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHH
Confidence 99999999999999999753 3345667777777766643
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.7e-18 Score=197.76 Aligned_cols=117 Identities=25% Similarity=0.339 Sum_probs=101.1
Q ss_pred EEEEEEEEEECCCC---CCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCC----CChHH
Q 000720 1208 IELENLLVQYNPTL---PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISM----IGLQD 1280 (1333)
Q Consensus 1208 I~f~nVsf~Y~~~~---p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~----i~l~~ 1280 (1333)
|+|+||+++|+++. +++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997443 259999999999999999999999999999999999999999999999999963 34678
Q ss_pred HhhcCeEecccc--cccccchhhhcCCCC---CCC----HHHHHHHHHhCCCC
Q 000720 1281 LRSRLSIIPQDP--MLFQGTVRTNLDPLE---QHS----DQEIWEVKISKLLT 1324 (1333)
Q Consensus 1281 LRs~isiVpQdp--~LF~GTIR~NLdp~~---~~s----DeeI~~aL~~~~L~ 1324 (1333)
+|+++++|+|+| .+|++|+.+|+.... ..+ ++++.++|+.++|.
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~ 134 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLA 134 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCC
Confidence 899999999998 799999999996321 122 34578899999995
|
|
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.9e-18 Score=186.96 Aligned_cols=141 Identities=17% Similarity=0.135 Sum_probs=106.0
Q ss_pred CeEeeCCc-EEEEECCCCCChhHHHHHHh--------CCCcCCCCcEEEECCeEEEEcCCCCCCCCCHHHHhccCCcCCH
Q 000720 617 KMKIMKGS-KVAVCGSVGSGKSSLLSSIL--------GEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQ 687 (1333)
Q Consensus 617 nl~i~~Ge-~~~ivG~~GsGKSTLl~~il--------G~~~~~~G~~i~~~g~iayv~Q~~~i~~~Tv~enI~~g~~~~~ 687 (1333)
|+++.+|+ +++|+||||||||||+++|. |...|..... .++|+.|.-- .+
T Consensus 21 ~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~-----~~~~~~~~~~----------~l------ 79 (200)
T cd03280 21 DIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS-----SLPVFENIFA----------DI------ 79 (200)
T ss_pred eEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc-----cCcCccEEEE----------ec------
Confidence 89999995 79999999999999999998 5333322111 2333333210 00
Q ss_pred HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 000720 688 SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL 767 (1333)
Q Consensus 688 ~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~ 767 (1333)
++...+.+...++|+||||+..+++++ .+|+++++|||++++|+..+..+...+++.+
T Consensus 80 ---------------------g~~~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~~l~~l 137 (200)
T cd03280 80 ---------------------GDEQSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIAILEEL 137 (200)
T ss_pred ---------------------CchhhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHH
Confidence 001112245578999999999999985 8999999999999999999888876666554
Q ss_pred h-CCCeEEEecCchhhhhcCCEEEEEeCCeEEEc
Q 000720 768 L-SQKTVLYTTHQLEFLDAADLVLVMKDGKIEQS 800 (1333)
Q Consensus 768 ~-~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~ 800 (1333)
. .+.|+|++||+.+....+|+++.|++|++...
T Consensus 138 ~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~ 171 (200)
T cd03280 138 LERGALVIATTHYGELKAYAYKREGVENASMEFD 171 (200)
T ss_pred HhcCCEEEEECCHHHHHHHHhcCCCeEEEEEEEe
Confidence 4 47899999999766677999999999999765
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=4e-18 Score=194.53 Aligned_cols=118 Identities=25% Similarity=0.400 Sum_probs=102.2
Q ss_pred cccEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccC-----CCCCeEEEcCEeCC--CCC
Q 000720 1205 SGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE-----PSGGRILIDGVDIS--MIG 1277 (1333)
Q Consensus 1205 ~G~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~e-----p~~G~I~IDGvdI~--~i~ 1277 (1333)
...|+++||+++|+. ..+|+|+||+|++||++||+|++|||||||+++|.|+++ |++|+|.+||.|+. +.+
T Consensus 11 ~~~l~i~nl~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 11 NIIISLQNVTISYGT--FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred CceEEEEeEEEEECC--EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 347999999999964 249999999999999999999999999999999999987 58999999999986 356
Q ss_pred hHHHhhcCeEecccccccccchhhhcCCCC---CC---CHHHHHHHHHhCCCC
Q 000720 1278 LQDLRSRLSIIPQDPMLFQGTVRTNLDPLE---QH---SDQEIWEVKISKLLT 1324 (1333)
Q Consensus 1278 l~~LRs~isiVpQdp~LF~GTIR~NLdp~~---~~---sDeeI~~aL~~~~L~ 1324 (1333)
..++|++++++||+|.+|.+|+++||.... .. .++++.++++.+++.
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~ 141 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVW 141 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCc
Confidence 778899999999999999999999997431 11 245678889998874
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.6e-18 Score=194.14 Aligned_cols=118 Identities=28% Similarity=0.401 Sum_probs=102.3
Q ss_pred cccEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccC-----CCCCeEEEcCEeCCC--CC
Q 000720 1205 SGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE-----PSGGRILIDGVDISM--IG 1277 (1333)
Q Consensus 1205 ~G~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~e-----p~~G~I~IDGvdI~~--i~ 1277 (1333)
.+.|+++|++++|+. . ++|+|+||+|++||.+||+|++|||||||+++|.|+++ |++|+|.+||.++.+ .+
T Consensus 11 ~~~l~~~~l~~~~~~-~-~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~ 88 (260)
T PRK10744 11 PSKIQVRNLNFYYGK-F-HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88 (260)
T ss_pred CceEEEEEEEEEeCC-e-EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence 467999999999963 3 59999999999999999999999999999999999986 589999999999964 45
Q ss_pred hHHHhhcCeEecccccccccchhhhcCCC----CCCC----HHHHHHHHHhCCCC
Q 000720 1278 LQDLRSRLSIIPQDPMLFQGTVRTNLDPL----EQHS----DQEIWEVKISKLLT 1324 (1333)
Q Consensus 1278 l~~LRs~isiVpQdp~LF~GTIR~NLdp~----~~~s----DeeI~~aL~~~~L~ 1324 (1333)
...+|++++++||+|.+|+.|+++|+... +..+ +++++++++.+++.
T Consensus 89 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 143 (260)
T PRK10744 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALW 143 (260)
T ss_pred hHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 67889999999999999999999999642 1122 35688999999974
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.2e-18 Score=189.24 Aligned_cols=115 Identities=23% Similarity=0.339 Sum_probs=100.8
Q ss_pred EEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeE
Q 000720 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1333)
Q Consensus 1208 I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isi 1287 (1333)
|+++||+++|. + .++|+|+||++++||.++|+|++|||||||+++|.|+.+|++|+|.+||.++.+. .++|+++++
T Consensus 1 l~~~~l~~~~~-~-~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~ 76 (208)
T cd03268 1 LKTNDLTKTYG-K-KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGA 76 (208)
T ss_pred CEEEEEEEEEC-C-eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEE
Confidence 57899999995 3 3599999999999999999999999999999999999999999999999999765 677889999
Q ss_pred eccccccc-ccchhhhcCCC---CCCCHHHHHHHHHhCCCCcc
Q 000720 1288 IPQDPMLF-QGTVRTNLDPL---EQHSDQEIWEVKISKLLTHK 1326 (1333)
Q Consensus 1288 VpQdp~LF-~GTIR~NLdp~---~~~sDeeI~~aL~~~~L~~~ 1326 (1333)
+||+|.+| +.|+++|+... ...+++++.++|+..+|.+.
T Consensus 77 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~ 119 (208)
T cd03268 77 LIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDS 119 (208)
T ss_pred ecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHH
Confidence 99999888 57999999642 12357789999999999653
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.8e-18 Score=193.12 Aligned_cols=117 Identities=31% Similarity=0.422 Sum_probs=100.4
Q ss_pred EEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCCh---HHHhhc
Q 000720 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGL---QDLRSR 1284 (1333)
Q Consensus 1208 I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l---~~LRs~ 1284 (1333)
|+++||+++|+.+ +++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+++. ..+|++
T Consensus 2 l~~~~l~~~~~~~-~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 2 LEVENLSKVYPNG-KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred eEEEeeeeecCCC-cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 6899999999633 359999999999999999999999999999999999999999999999999987764 457899
Q ss_pred CeEecccccccc-cchhhhcCCCC---------------CCCHHHHHHHHHhCCCCc
Q 000720 1285 LSIIPQDPMLFQ-GTVRTNLDPLE---------------QHSDQEIWEVKISKLLTH 1325 (1333)
Q Consensus 1285 isiVpQdp~LF~-GTIR~NLdp~~---------------~~sDeeI~~aL~~~~L~~ 1325 (1333)
++++||+|.+|. .|+++|+.... ...++++.++++.++|.+
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 137 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLAD 137 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHh
Confidence 999999999886 59999995310 112456888999999864
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.2e-18 Score=189.71 Aligned_cols=118 Identities=29% Similarity=0.414 Sum_probs=101.3
Q ss_pred EEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeEe
Q 000720 1209 ELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSII 1288 (1333)
Q Consensus 1209 ~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isiV 1288 (1333)
+++|++++|+.+...+|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+....|++++++
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 47899999965323599999999999999999999999999999999999999999999999999988888899999999
Q ss_pred cccc--cccccchhhhcCCC---CCCC----HHHHHHHHHhCCCCcc
Q 000720 1289 PQDP--MLFQGTVRTNLDPL---EQHS----DQEIWEVKISKLLTHK 1326 (1333)
Q Consensus 1289 pQdp--~LF~GTIR~NLdp~---~~~s----DeeI~~aL~~~~L~~~ 1326 (1333)
||+| .+++.|+++|+... ...+ ++++.++++..+|.+.
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 127 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGL 127 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhh
Confidence 9998 46789999999642 1122 3467789999998643
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.9e-18 Score=197.08 Aligned_cols=119 Identities=30% Similarity=0.450 Sum_probs=102.0
Q ss_pred cEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCC--CCChHHHhhc
Q 000720 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDIS--MIGLQDLRSR 1284 (1333)
Q Consensus 1207 ~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~--~i~l~~LRs~ 1284 (1333)
-|+++||+++|+++ ..+|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+. ..+..++|++
T Consensus 5 ~l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 5 ILKVEELNYNYSDG-THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred eEEEEeEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 48999999999633 34999999999999999999999999999999999999999999999999984 3456788999
Q ss_pred CeEecccc--cccccchhhhcCCC---CCCC----HHHHHHHHHhCCCCcc
Q 000720 1285 LSIIPQDP--MLFQGTVRTNLDPL---EQHS----DQEIWEVKISKLLTHK 1326 (1333)
Q Consensus 1285 isiVpQdp--~LF~GTIR~NLdp~---~~~s----DeeI~~aL~~~~L~~~ 1326 (1333)
++++||+| .+|+.|+++|+... ...+ ++.+.++++.++|.+.
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~ 134 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHL 134 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhh
Confidence 99999998 67899999999642 1223 2457888999999653
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.5e-18 Score=188.75 Aligned_cols=118 Identities=27% Similarity=0.364 Sum_probs=100.5
Q ss_pred EEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHH---Hhhc
Q 000720 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD---LRSR 1284 (1333)
Q Consensus 1208 I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~---LRs~ 1284 (1333)
|+++|++++|+++ ..+|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.|+.+++.+. +|++
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 2 IRFEHVSKAYLGG-RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred EEEEeeEEEecCC-CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 7899999999533 35999999999999999999999999999999999999999999999999998877554 6889
Q ss_pred CeEecccccc-cccchhhhcCCC---CCCCH----HHHHHHHHhCCCCcc
Q 000720 1285 LSIIPQDPML-FQGTVRTNLDPL---EQHSD----QEIWEVKISKLLTHK 1326 (1333)
Q Consensus 1285 isiVpQdp~L-F~GTIR~NLdp~---~~~sD----eeI~~aL~~~~L~~~ 1326 (1333)
++++||+|.+ +..|+++|+... ...++ +++.++|+..++.+.
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 130 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDK 130 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhh
Confidence 9999999987 467999999642 12232 357789999998653
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.3e-18 Score=193.64 Aligned_cols=117 Identities=26% Similarity=0.383 Sum_probs=102.9
Q ss_pred EEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeE
Q 000720 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1333)
Q Consensus 1208 I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isi 1287 (1333)
++++||+++|+++ ..+|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+..++|+++++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (242)
T cd03295 1 IEFENVTKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGY 79 (242)
T ss_pred CEEEEEEEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEE
Confidence 4789999999753 349999999999999999999999999999999999999999999999999999888889999999
Q ss_pred ecccccccc-cchhhhcCCCC---CC----CHHHHHHHHHhCCCCc
Q 000720 1288 IPQDPMLFQ-GTVRTNLDPLE---QH----SDQEIWEVKISKLLTH 1325 (1333)
Q Consensus 1288 VpQdp~LF~-GTIR~NLdp~~---~~----sDeeI~~aL~~~~L~~ 1325 (1333)
+||+|.+|. .|+++|+.... .. .++++.+++++.+|.+
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~ 125 (242)
T cd03295 80 VIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP 125 (242)
T ss_pred EccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc
Confidence 999999996 69999996321 11 2456889999999974
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.3e-17 Score=191.48 Aligned_cols=207 Identities=23% Similarity=0.342 Sum_probs=161.3
Q ss_pred CCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCe-----
Q 000720 587 SDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK----- 660 (1333)
Q Consensus 587 ~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~----- 660 (1333)
.+...+++|.+..=+. ....+++ ||++.+||+++|.|-.|-|-+-|+.+|+|+.++.+|++ .++|+
T Consensus 254 g~~vL~V~~L~v~~~~-------~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I-~l~G~~v~~~ 325 (501)
T COG3845 254 GEVVLEVEDLSVKDRR-------GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRI-LLNGKDVLGR 325 (501)
T ss_pred CCeEEEEeeeEeecCC-------CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceE-EECCEecccc
Confidence 4556788887764322 2467889 99999999999999999999999999999999888986 66663
Q ss_pred ----------EEEEcCCC----CCCCCCHHHHhccCCcCCH-------HHHHHHHHHc-ccchHHHhhcCCCccccCCCC
Q 000720 661 ----------KAYVPQSS----WIQTGTIRENILFGKDMRQ-------SFYEEVLEGC-ALNQDIEMWADGDLSVVGERG 718 (1333)
Q Consensus 661 ----------iayv~Q~~----~i~~~Tv~enI~~g~~~~~-------~~~~~v~~~~-~l~~d~~~~~~g~~t~ig~~g 718 (1333)
+||||.+. .....|+.||+.++...++ -.++++.+.+ .+.+.++..+.+. ..+.
T Consensus 326 ~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~----~~~a 401 (501)
T COG3845 326 LSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSP----DAPA 401 (501)
T ss_pred CCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCC----Ccch
Confidence 58999886 3578899999998654321 0111111111 1111122222222 2456
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhh-hcCCEEEEEeCCeE
Q 000720 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFL-DAADLVLVMKDGKI 797 (1333)
Q Consensus 719 ~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l-~~aD~i~vl~~G~i 797 (1333)
.+||||++||+-+||-+..+||+++...||-|||....+.+.+.+++...+|+.|++++-|++++ ..||+|.||.+|+|
T Consensus 402 ~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri 481 (501)
T COG3845 402 RSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRI 481 (501)
T ss_pred hhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCce
Confidence 79999999999999999999999999999999999999999998888888899999999999986 55999999999999
Q ss_pred EEccChHH
Q 000720 798 EQSGKYED 805 (1333)
Q Consensus 798 ~~~g~~~~ 805 (1333)
+...++++
T Consensus 482 ~~~~~~~~ 489 (501)
T COG3845 482 VGIVPPEE 489 (501)
T ss_pred eccccccc
Confidence 98776665
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.4e-18 Score=194.76 Aligned_cols=121 Identities=20% Similarity=0.343 Sum_probs=105.1
Q ss_pred ccEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCC---CeEEEcCEeCCCCChHHHh
Q 000720 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG---GRILIDGVDISMIGLQDLR 1282 (1333)
Q Consensus 1206 G~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~---G~I~IDGvdI~~i~l~~LR 1282 (1333)
+.|+++|++++|++...++|+|+||+|++||.+||+|++|||||||+++|.|+++|++ |+|.+||.++.+.+...+|
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 4699999999996433359999999999999999999999999999999999999988 8999999999988888899
Q ss_pred hcCeEecccc--cccccchhhhcCCC---CCCCH----HHHHHHHHhCCCCcc
Q 000720 1283 SRLSIIPQDP--MLFQGTVRTNLDPL---EQHSD----QEIWEVKISKLLTHK 1326 (1333)
Q Consensus 1283 s~isiVpQdp--~LF~GTIR~NLdp~---~~~sD----eeI~~aL~~~~L~~~ 1326 (1333)
++++++||+| .+++.|+++||... ...++ +++.++++.++|.+.
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~ 136 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDY 136 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhH
Confidence 9999999999 46789999999742 12333 457889999999754
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.9e-18 Score=195.50 Aligned_cols=118 Identities=25% Similarity=0.394 Sum_probs=103.2
Q ss_pred EEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeE
Q 000720 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1333)
Q Consensus 1208 I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isi 1287 (1333)
++++||+++|+.+. .+|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++...+...+|+++++
T Consensus 4 l~~~~l~~~~~~~~-~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (277)
T PRK13652 4 IETRDLCYSYSGSK-EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGL 82 (277)
T ss_pred EEEEEEEEEeCCCC-ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEE
Confidence 78999999996433 49999999999999999999999999999999999999999999999999998888899999999
Q ss_pred ecccc--cccccchhhhcCCCC---CCC----HHHHHHHHHhCCCCcc
Q 000720 1288 IPQDP--MLFQGTVRTNLDPLE---QHS----DQEIWEVKISKLLTHK 1326 (1333)
Q Consensus 1288 VpQdp--~LF~GTIR~NLdp~~---~~s----DeeI~~aL~~~~L~~~ 1326 (1333)
+||+| .+|+.|+++|+.... ..+ ++.+.++++.++|.+.
T Consensus 83 v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 130 (277)
T PRK13652 83 VFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEEL 130 (277)
T ss_pred EecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhH
Confidence 99998 478899999996311 222 3457899999999643
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.2e-18 Score=182.38 Aligned_cols=121 Identities=27% Similarity=0.394 Sum_probs=101.3
Q ss_pred EEEEEEEEEECCCC--CCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChH---HH-
Q 000720 1208 IELENLLVQYNPTL--PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQ---DL- 1281 (1333)
Q Consensus 1208 I~f~nVsf~Y~~~~--p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~---~L- 1281 (1333)
++++||+..|..+. -.||+|+||+|++||.|||+||||||||||++.|-++-.|++|.|.++|.|+..++-+ .+
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 57899999996442 2599999999999999999999999999999999999999999999999999999854 44
Q ss_pred hhcCeEeccccccccc-chhhhcC-C--CCC----CCHHHHHHHHHhCCCCcccc
Q 000720 1282 RSRLSIIPQDPMLFQG-TVRTNLD-P--LEQ----HSDQEIWEVKISKLLTHKSY 1328 (1333)
Q Consensus 1282 Rs~isiVpQdp~LF~G-TIR~NLd-p--~~~----~sDeeI~~aL~~~~L~~~~~ 1328 (1333)
|++||+|+|+..|++. |++||+. | +.. ..++.+.+.++.++|.+...
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~ 136 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLL 136 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhc
Confidence 4679999999998866 9999996 2 222 12456777888889985433
|
|
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.8e-15 Score=175.74 Aligned_cols=247 Identities=17% Similarity=0.210 Sum_probs=158.5
Q ss_pred HHHhcchHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hccCCCCChH
Q 000720 1070 SESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILV------TLPRSAIDPS 1143 (1333)
Q Consensus 1070 ~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~ll~~~~~~~~~~~~~------~~~~~~~~~g 1143 (1333)
++...+...|--|+.++.....-+...++.............|+++..+.+--+...+. .+++ ..+.+..+|.
T Consensus 269 ~rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Ylg~ils-y~vi~~p~Fs~h~y~~~s~a 347 (659)
T KOG0060|consen 269 SRLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIFDYLGGILS-YVVIAIPFFSGHVYDDLSPA 347 (659)
T ss_pred eeeeecchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhe-eeEEeeeeecccccCCcCHH
Confidence 34456667777777776666665555555555555666777888887776653222111 1111 1122334454
Q ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcC----C-------------CCCCcccC-CCCCCCC
Q 000720 1144 LAGLAAT----YGLNLNVLQAWVIWNLCNVENKMISVERILQFTNI----P-------------SEAPLVIK-NSRPSPE 1201 (1333)
Q Consensus 1144 ~~gl~l~----y~l~l~~~l~~~v~~~~~le~~~~SveRI~~~~~~----p-------------~E~~~~~~-~~~~~~~ 1201 (1333)
..--.++ +.+.+...+..++....++..--+-..||.|+++. . .|..+... .+..+..
T Consensus 348 EL~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~~~ 427 (659)
T KOG0060|consen 348 ELSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSGKA 427 (659)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCccc
Confidence 3222221 11222222222222222222222335787777532 1 11111111 0112456
Q ss_pred CCCcccEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEE--cCEeCCCCChH
Q 000720 1202 WPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILI--DGVDISMIGLQ 1279 (1333)
Q Consensus 1202 wp~~G~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~I--DGvdI~~i~l~ 1279 (1333)
||.+-.|+|++|++.=+.+.+...+|+||+|+.|+.+-|+|+||+|||||+..|-++++..+|+|.- ||-+
T Consensus 428 ~~~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~------- 500 (659)
T KOG0060|consen 428 EPADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGP------- 500 (659)
T ss_pred ccccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCC-------
Confidence 7777889999999998766676677799999999999999999999999999999999999999875 3433
Q ss_pred HHhhcCeEecccccccccchhhhcC-CC-------CCCCHHHHHHHHHhCCCCccc
Q 000720 1280 DLRSRLSIIPQDPMLFQGTVRTNLD-PL-------EQHSDQEIWEVKISKLLTHKS 1327 (1333)
Q Consensus 1280 ~LRs~isiVpQdp~LF~GTIR~NLd-p~-------~~~sDeeI~~aL~~~~L~~~~ 1327 (1333)
+.+=++||.|++=.||+|+-+- |. +-.+|++|.+.||.++|.+.+
T Consensus 501 ---~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~ 553 (659)
T KOG0060|consen 501 ---KDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLL 553 (659)
T ss_pred ---CceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHH
Confidence 4588999999999999999984 42 237899999999999997654
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.1e-18 Score=191.56 Aligned_cols=119 Identities=29% Similarity=0.456 Sum_probs=101.6
Q ss_pred EEEEEEEEEECCCC--CCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHH---Hh
Q 000720 1208 IELENLLVQYNPTL--PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD---LR 1282 (1333)
Q Consensus 1208 I~f~nVsf~Y~~~~--p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~---LR 1282 (1333)
|+++|++++|+... .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+...+..+ .|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999996431 25999999999999999999999999999999999999999999999999998876544 58
Q ss_pred hcCeEecccccccc-cchhhhcCCC---CCC----CHHHHHHHHHhCCCCcc
Q 000720 1283 SRLSIIPQDPMLFQ-GTVRTNLDPL---EQH----SDQEIWEVKISKLLTHK 1326 (1333)
Q Consensus 1283 s~isiVpQdp~LF~-GTIR~NLdp~---~~~----sDeeI~~aL~~~~L~~~ 1326 (1333)
++++++||+|.+|. .|+++|+... ... .++++.++|+..+|.+.
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 133 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDK 133 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhh
Confidence 89999999999997 5999999631 111 24578899999998654
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=99.74 E-value=3e-18 Score=188.90 Aligned_cols=117 Identities=32% Similarity=0.457 Sum_probs=100.0
Q ss_pred EEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCC--CChHHHhhcC
Q 000720 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISM--IGLQDLRSRL 1285 (1333)
Q Consensus 1208 I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~--i~l~~LRs~i 1285 (1333)
|+++||+++|.. .++|+|+||++++||++||+|++|||||||+++|.|+++|++|+|.+||.++.. .+...+|+++
T Consensus 1 l~~~~l~~~~~~--~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (213)
T cd03262 1 IEIKNLHKSFGD--FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKV 78 (213)
T ss_pred CEEEEEEEEECC--eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcc
Confidence 578999999964 349999999999999999999999999999999999999999999999999953 4566789999
Q ss_pred eEecccccccc-cchhhhcCCC----CCCC----HHHHHHHHHhCCCCcc
Q 000720 1286 SIIPQDPMLFQ-GTVRTNLDPL----EQHS----DQEIWEVKISKLLTHK 1326 (1333)
Q Consensus 1286 siVpQdp~LF~-GTIR~NLdp~----~~~s----DeeI~~aL~~~~L~~~ 1326 (1333)
+++||+|.+|. .|+++|+... ...+ ++++.+++++.++.+.
T Consensus 79 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 128 (213)
T cd03262 79 GMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADK 128 (213)
T ss_pred eEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhH
Confidence 99999999986 6999999642 1222 3467889999998653
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.8e-18 Score=194.62 Aligned_cols=117 Identities=22% Similarity=0.298 Sum_probs=104.1
Q ss_pred ccEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcC
Q 000720 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1285 (1333)
Q Consensus 1206 G~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~i 1285 (1333)
..|+|+||+.+|. + ..+++|+||+|++||.+.+.|||||||||++.+|.||..|++|+|.|||.||.+++.+. +.|
T Consensus 4 ~~l~i~~v~k~yg-~-~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~k--R~i 79 (352)
T COG3842 4 PALEIRNVSKSFG-D-FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEK--RPI 79 (352)
T ss_pred ceEEEEeeeeecC-C-eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhh--ccc
Confidence 4699999999997 3 45999999999999999999999999999999999999999999999999999988885 899
Q ss_pred eEecccccccc-cchhhhcCCC-C---CCCH----HHHHHHHHhCCCCcc
Q 000720 1286 SIIPQDPMLFQ-GTVRTNLDPL-E---QHSD----QEIWEVKISKLLTHK 1326 (1333)
Q Consensus 1286 siVpQdp~LF~-GTIR~NLdp~-~---~~sD----eeI~~aL~~~~L~~~ 1326 (1333)
++|+|+.-||+ -||++|+.+. . .-.+ +.+.++|+.++|.+.
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~ 129 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGF 129 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhh
Confidence 99999999995 5999999753 2 1233 368999999999875
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.2e-18 Score=187.51 Aligned_cols=119 Identities=29% Similarity=0.400 Sum_probs=100.9
Q ss_pred EEEEEEEEEECCCC--CCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHH---h
Q 000720 1208 IELENLLVQYNPTL--PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDL---R 1282 (1333)
Q Consensus 1208 I~f~nVsf~Y~~~~--p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~L---R 1282 (1333)
|+++||+++|.+.. .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.|+.+++..+. |
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68999999996421 359999999999999999999999999999999999999999999999999998876653 4
Q ss_pred -hcCeEecccccccc-cchhhhcCCC---CCCC----HHHHHHHHHhCCCCcc
Q 000720 1283 -SRLSIIPQDPMLFQ-GTVRTNLDPL---EQHS----DQEIWEVKISKLLTHK 1326 (1333)
Q Consensus 1283 -s~isiVpQdp~LF~-GTIR~NLdp~---~~~s----DeeI~~aL~~~~L~~~ 1326 (1333)
++++++||+|.+|. .|+++|+... ...+ ++++.++++..+|.+.
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 134 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHR 134 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhh
Confidence 68999999999995 5999999641 1121 3467899999998653
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.2e-18 Score=192.76 Aligned_cols=160 Identities=29% Similarity=0.427 Sum_probs=121.4
Q ss_pred eeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEE----------EE-------------CC--eE----EEEcCCCCC
Q 000720 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI----------KV-------------HG--KK----AYVPQSSWI 670 (1333)
Q Consensus 620 i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i----------~~-------------~g--~i----ayv~Q~~~i 670 (1333)
.++|+.++|+||||-||||-++.|+|++.|.-|..- .. +| ++ -||.--|-.
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk~ 176 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKV 176 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHHH
Confidence 578999999999999999999999999999777420 01 11 12 233333556
Q ss_pred CCCCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCC
Q 000720 671 QTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSA 750 (1333)
Q Consensus 671 ~~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~sa 750 (1333)
..++|+|-+.--. ....++++++..+|.+ .+++...+||||+-||++||.|+.+++|+|++|||+|-
T Consensus 177 ~KG~v~elLk~~d--e~g~~devve~l~L~n-----------vl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSy 243 (591)
T COG1245 177 VKGKVGELLKKVD--ERGKFDEVVERLGLEN-----------VLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSY 243 (591)
T ss_pred hcchHHHHHHhhh--hcCcHHHHHHHhcchh-----------hhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCccc
Confidence 6788888764211 1235666777666543 23456789999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhhc-CCEEEEEe
Q 000720 751 VDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDA-ADLVLVMK 793 (1333)
Q Consensus 751 LD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~~-aD~i~vl~ 793 (1333)
||...+-..- ++++.+.+ +|+||+|.||+..++. +|.|-++-
T Consensus 244 LDi~qRl~~a-r~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~Y 287 (591)
T COG1245 244 LDIRQRLNAA-RVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILY 287 (591)
T ss_pred ccHHHHHHHH-HHHHHHhccCCeEEEEechHHHHHHhhheeEEEe
Confidence 9998765554 45666665 7999999999999987 89887774
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.3e-18 Score=187.68 Aligned_cols=116 Identities=21% Similarity=0.253 Sum_probs=101.8
Q ss_pred EEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCCh----HHHhhc
Q 000720 1209 ELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGL----QDLRSR 1284 (1333)
Q Consensus 1209 ~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l----~~LRs~ 1284 (1333)
.+.|+.++|+++ .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+. ...|+.
T Consensus 2 ~~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 80 (218)
T cd03290 2 QVTNGYFSWGSG-LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYS 80 (218)
T ss_pred eeeeeEEecCCC-CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcce
Confidence 567999999766 459999999999999999999999999999999999999999999999999877653 346788
Q ss_pred CeEecccccccccchhhhcCCCCCCCHHHHHHHHHhCCCCc
Q 000720 1285 LSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVKISKLLTH 1325 (1333)
Q Consensus 1285 isiVpQdp~LF~GTIR~NLdp~~~~sDeeI~~aL~~~~L~~ 1325 (1333)
++++||+|.+|+.|+++||.....+++++.+++++.++|.+
T Consensus 81 i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~ 121 (218)
T cd03290 81 VAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQP 121 (218)
T ss_pred EEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHH
Confidence 99999999999999999998655556777888888888753
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.2e-18 Score=182.73 Aligned_cols=118 Identities=21% Similarity=0.274 Sum_probs=101.1
Q ss_pred cEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCe
Q 000720 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1333)
Q Consensus 1207 ~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~is 1286 (1333)
.+++++|+.+|.. ..||+||||+|++||.|+||||||||||||++++.|+..|++|+|.+||.++..- ...++
T Consensus 3 ~l~i~~v~~~f~~--~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~~ 75 (248)
T COG1116 3 LLEIEGVSKSFGG--VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDIG 75 (248)
T ss_pred eEEEEeeEEEeCc--eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCEE
Confidence 5899999999975 3599999999999999999999999999999999999999999999999988443 35799
Q ss_pred Eeccccccccc-chhhhcCCC-CC------CCHHHHHHHHHhCCCCcccccCC
Q 000720 1287 IIPQDPMLFQG-TVRTNLDPL-EQ------HSDQEIWEVKISKLLTHKSYQCE 1331 (1333)
Q Consensus 1287 iVpQdp~LF~G-TIR~NLdp~-~~------~sDeeI~~aL~~~~L~~~~~~~~ 1331 (1333)
+|+|++.||.- ||++|+... .. -..+.+.++|+++||.+....-|
T Consensus 76 ~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P 128 (248)
T COG1116 76 YVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP 128 (248)
T ss_pred EEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc
Confidence 99999999987 999999632 11 13456899999999987755443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 1333 | ||||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 8e-45 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 1e-29 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 2e-29 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 2e-29 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 2e-29 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 1e-28 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 1e-28 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 3e-28 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 1e-27 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 1e-27 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 1e-27 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 2e-27 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 3e-27 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 2e-25 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 2e-20 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 8e-19 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 2e-11 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 2e-18 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 7e-09 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 2e-18 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 2e-09 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 7e-16 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 2e-15 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 3e-11 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 3e-15 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 3e-09 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 5e-15 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 4e-11 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 5e-15 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 4e-11 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 1e-14 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 1e-14 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 1e-10 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 1e-14 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 1e-10 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 1e-14 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 1e-10 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 1e-14 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 2e-10 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 1e-14 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 3e-07 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 1e-14 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 1e-08 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 2e-14 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 2e-11 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 2e-14 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 1e-10 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 2e-13 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 1e-10 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 2e-13 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 1e-10 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 1e-12 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 8e-11 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 4e-12 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 3e-10 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 4e-10 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 6e-10 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-09 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-07 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 7e-09 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-07 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 1e-08 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 1e-08 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 2e-06 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 2e-08 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 4e-08 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 8e-08 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 1e-07 | ||
| 1g29_1 | 372 | Malk Length = 372 | 1e-07 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-07 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 2e-07 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 3e-07 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 3e-07 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 6e-07 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 6e-07 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 8e-07 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 1e-06 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 1e-06 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 1e-06 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 2e-06 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 2e-06 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 2e-06 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 3e-06 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 4e-06 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 6e-06 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 1e-05 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 1e-04 | ||
| 2vf7_A | 842 | Crystal Structure Of Uvra2 From Deinococcus Radiodu | 1e-04 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 2e-04 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 2e-04 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 2e-04 |
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans Length = 842 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1333 | |||
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 1e-117 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 2e-15 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 1e-115 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 6e-12 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 1e-114 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 3e-14 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 1e-72 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 1e-31 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 7e-30 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 4e-65 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 5e-28 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 3e-44 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 3e-38 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 9e-43 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 5e-39 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 2e-38 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 9e-37 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 3e-37 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 9e-23 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 2e-35 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 2e-24 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 6e-34 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 2e-33 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 1e-32 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 4e-26 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 2e-32 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 3e-27 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 4e-32 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 6e-23 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 3e-31 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 1e-29 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 7e-29 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 4e-24 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 6e-24 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 2e-11 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 5e-23 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 1e-08 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 1e-22 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 3e-09 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 6e-21 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 8e-17 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 4e-07 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 2e-04 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 6e-20 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 5e-18 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 2e-08 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 7e-05 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 9e-20 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 2e-18 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 5e-07 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 8e-07 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 5e-18 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 4e-15 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 1e-07 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 1e-05 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 9e-18 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 1e-16 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 7e-17 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 6e-10 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 5e-16 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 5e-15 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 1e-14 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-14 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-12 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-10 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 8e-04 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 3e-14 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 2e-06 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 6e-06 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 4e-14 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 7e-14 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 1e-07 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 1e-13 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 4e-13 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 6e-07 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 2e-12 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 2e-12 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 3e-12 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 8e-09 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 3e-12 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 9e-10 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 2e-11 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 2e-11 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 2e-11 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 3e-10 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 4e-11 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 7e-11 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 1e-10 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 4e-05 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 1e-09 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 6e-04 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 9e-09 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 1e-08 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 1e-06 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 9e-05 |
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 367 bits (943), Expect = e-117
Identities = 89/289 (30%), Positives = 149/289 (51%), Gaps = 7/289 (2%)
Query: 557 AQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD 616
+ T+V + + F +E + + ++ ++ P +K +
Sbjct: 1 STTEVVMENVTAFWEEGFGELF-EKAKQNNNNRKTSNGDDSLSFS-NFSLLGTPVLKDIN 58
Query: 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIR 676
KI +G +AV GS G+GK+SLL I+GE+ G IK G+ ++ Q+SWI GTI+
Sbjct: 59 -FKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK-IKHSGRISFCSQNSWIMPGTIK 116
Query: 677 ENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY 736
ENI+ G + Y V++ C L +DI +A+ D V+GE GI LSGGQ+ RI LARAVY
Sbjct: 117 ENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVY 175
Query: 737 SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGK 796
++D+Y+ D PF +D T +F+ C+ L++ KT + T ++E L AD +L++ +G
Sbjct: 176 KDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGS 235
Query: 797 IEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPCQMS 845
G + +L + ++ S DQ + + + L+ + S
Sbjct: 236 SYFYGTFSELQN-LRPDFSSKLMGC-DSFDQFSAERRNSILTETLHRFS 282
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 77.8 bits (192), Expect = 2e-15
Identities = 27/132 (20%), Positives = 48/132 (36%), Gaps = 19/132 (14%)
Query: 1173 MISVERILQF--TNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITC 1230
+ +E + F +N+ + N + P L K I
Sbjct: 4 EVVMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTPVL----KDINF 59
Query: 1231 TFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQ 1290
+ + V G TG+GK++L+ + +EPS G+I G R+S Q
Sbjct: 60 KIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQ 106
Query: 1291 DPMLFQGTVRTN 1302
+ + GT++ N
Sbjct: 107 NSWIMPGTIKEN 118
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 358 bits (921), Expect = e-115
Identities = 99/242 (40%), Positives = 151/242 (62%), Gaps = 9/242 (3%)
Query: 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR 649
+I + + W + PT+ I +G+ VAV G VG GKSSLLS++L E+ +
Sbjct: 3 SITVRNATFTWARSD----PPTLNGIT-FSIPEGALVAVVGQVGCGKSSLLSALLAEMDK 57
Query: 650 ISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADG 709
+ G + + G AYVPQ +WIQ ++RENILFG + + +Y V++ CAL D+E+ G
Sbjct: 58 VEGH-VAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSG 116
Query: 710 DLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCL--MGL 767
D + +GE+G+NLSGGQKQR+ LARAVYSN+D+Y+FDDP SAVDAH G H+F+ + G+
Sbjct: 117 DRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGM 176
Query: 768 LSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQ 827
L KT + TH + +L D+++VM GKI + G Y++L+A ++ ++ +
Sbjct: 177 LKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLA-RDGAFAEFLRTYASHHHH 235
Query: 828 VN 829
+
Sbjct: 236 HH 237
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 66.0 bits (162), Expect = 6e-12
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 13/97 (13%)
Query: 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGR 1265
I + N + + P L GIT + P + VVG+ G GKS+L+ AL ++ G
Sbjct: 2 NSITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 61
Query: 1266 ILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTN 1302
+ I G ++ +PQ + ++R N
Sbjct: 62 VAIKG-------------SVAYVPQQAWIQNDSLREN 85
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 355 bits (913), Expect = e-114
Identities = 83/234 (35%), Positives = 130/234 (55%), Gaps = 7/234 (2%)
Query: 587 SDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGE 646
+ + +E W+ P +K + KI +G +AV GS G+GK+SLL I+GE
Sbjct: 3 TTTEVVMENVTAFWEEGGT----PVLKDIN-FKIERGQLLAVAGSTGAGKTSLLMMIMGE 57
Query: 647 IPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMW 706
+ G IK G+ ++ Q SWI GTI+ENI+FG + Y V++ C L +DI +
Sbjct: 58 LEPSEGK-IKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKF 116
Query: 707 ADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMG 766
A+ D V+GE GI LSGGQ+ RI LARAVY ++D+Y+ D PF +D T +F+ C+
Sbjct: 117 AEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK 176
Query: 767 LLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKA 820
L++ KT + T ++E L AD +L++ +G G + +L + ++
Sbjct: 177 LMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN-LQPDFSSKLMG 229
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 3e-14
Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 13/99 (13%)
Query: 1204 SSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG 1263
++ ++ +EN+ + VLK I + + V G TG+GK++L+ + +EPS
Sbjct: 3 TTTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE 62
Query: 1264 GRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTN 1302
G+I G R+S Q + GT++ N
Sbjct: 63 GKIKHSG-------------RISFCSQFSWIMPGTIKEN 88
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 265 bits (680), Expect = 1e-72
Identities = 196/1063 (18%), Positives = 376/1063 (35%), Gaps = 133/1063 (12%)
Query: 338 WYFGANRIGIRVRSALTVLIYKRSMAIKFAGPSSGIIINMINVDV--------ERIGDFF 389
W A R ++R I + + F G + + DV ++IG FF
Sbjct: 132 WCLAAGRQIHKIRQKFFHAIMNQEIG-WFDVHDVGELNTRLTDDVSKINEGIGDKIGMFF 190
Query: 390 LYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEA 449
+ F +I + G L + + +S A F + A
Sbjct: 191 QAM-------ATFFGGFIIGFT-RGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHA 242
Query: 450 KDARIKATSETLKSMRVLKLLSWEQEFLKKLLR-LREIERDSLKKYLYTCSAIAFLFWAS 508
E L ++R + +++ L++ L E +R +KK + ++ F
Sbjct: 243 YAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAF-LL 301
Query: 509 PTLVSVITF--GVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRI 566
+ F G +++ + G VL+ + I + I A + + Y +
Sbjct: 302 IYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEV 361
Query: 567 QEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFK---KPTIKLTDK--MKIM 621
+ I ++ K ++ ++E + +F + +++ +K+
Sbjct: 362 FKIIDNKPSIDSFSKSGHKPDNIQGNLEF-------KNIHFSYPSRKEVQILKGLNLKVK 414
Query: 622 KGSKVAVCGSVGSGKSSLLSSIL-------GEIPRISGAAIK------VHGKKAYVPQSS 668
G VA+ G+ G GKS+ + + G + I G I+ + V Q
Sbjct: 415 SGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMV-SIDGQDIRTINVRYLREIIGVVSQEP 473
Query: 669 WIQTGTIRENILFGKDMRQSFYEEVLEGCAL-NQD--IEMWADGDLSVVGERGINLSGGQ 725
+ TI ENI +G++ +E+ + N I ++VGERG LSGGQ
Sbjct: 474 VLFATTIAENIRYGRE--DVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQ 531
Query: 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA 785
KQRI +ARA+ N + + D+ SA+D + + + L +T + H+L +
Sbjct: 532 KQRIAIARALVRNPKILLLDEATSALDTES-EAVVQAALDKAREGRTTIVIAHRLSTVRN 590
Query: 786 ADLVLVMKDGKIEQSGKYEDLIADQN--SELVR-QMKAHRKSLDQVNPPQEDKCLSR--- 839
AD++ G I + G +++L+ ++ +LV Q + L +D+ +
Sbjct: 591 ADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQTAGNEIELGNEACKSKDEIDNLDMS 650
Query: 840 VPCQMSQITEERFARPISCGEFSGRSQDEDTELGRVKWTVYSAFITLVYKGALVPVILL- 898
S + R R CG + E S + L P ++
Sbjct: 651 SKDSGSSLIRRRSTRKSICGPHDQDRKLSTKEALDEDVPPASFWRILKLNSTEWPYFVVG 710
Query: 899 --CQVLFQALQMGSNYWIAWA--------TDEKRKVSREQLIGVFIFLSGGSSFFILGRA 948
C ++ LQ + + E ++ + +F+ L S +
Sbjct: 711 IFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQG 770
Query: 949 VLLATIAIKTAQRLFLNMITSVFRAPISFFDST--PSSRILNRCSTDQSTVDTDIPYRLA 1006
+RL + S+ R +S+FD + + R + D + V RLA
Sbjct: 771 FTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLA 830
Query: 1007 GLAFALIQLLSIIILMSQAAWQ---VFPLFLVILGISIWYQAYYITTARELARMVGTRKA 1063
+ + L + II+ WQ + + I+ I+ + ++ +
Sbjct: 831 VIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSG 890
Query: 1064 PILHHFSESIAGATTIRCFNQENRFLLRSHSLIDD---------------YSCVTFHNCG 1108
I +E+I T+ +E +F + +S
Sbjct: 891 KIA---TEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYF 947
Query: 1109 TMEWLCLR--INLLFN-----FAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAW 1161
+ R L+ LV +V + + +A
Sbjct: 948 SY-AAAFRFGAYLVTQQLMTFENVLLVFSAIVF--------GAMAVGQVSSFAPDYAKA- 997
Query: 1162 VIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSS--GKIELENLLVQYNP 1219
+S I++ E I + P+ G ++ ++ Y P
Sbjct: 998 -----------TVSASHIIRIIEKTPE----IDSYSTQGLKPNMLEGNVQFSGVVFNY-P 1041
Query: 1220 TLP--MVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG 1277
T P VL+G++ + + +VG +G GKST++Q L R +P G + +DG +I +
Sbjct: 1042 TRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLN 1101
Query: 1278 LQDLRSRLSIIPQDPMLFQGTVRTNL---DPLEQHSDQEIWEV 1317
+Q LR++L I+ Q+P+LF ++ N+ D S +EI
Sbjct: 1102 VQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRA 1144
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 1e-31
Identities = 117/603 (19%), Positives = 238/603 (39%), Gaps = 85/603 (14%)
Query: 274 WKSLALNAAFAGVNTIASYIGPFLITNFVS-FLSGKHDHSSYHYGLVLASVFLFAKTVES 332
W + A +N + + V F +G + + + +FL +
Sbjct: 704 WPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISF 763
Query: 333 LTQ--RQWYFG--ANRIGIRVRSALTVLIYKRSMAIKFAGP--SSGIIINMINVDVERIG 386
+T + + FG + R+R + + ++ ++ F P ++G + + D ++
Sbjct: 764 ITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSW-FDDPKNTTGALTTRLANDAAQVK 822
Query: 387 DFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAA-------LFSTIFVMVSNTPLANRQ 439
R+ ++ Q L G + L + + ++ + +
Sbjct: 823 G--ATGSRLAVI-FQNIANLGT-----GIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKM 874
Query: 440 E-RFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLR-LREIERDSLKKYLYT 497
+ + K +E +++ R + L+ EQ+F + L+ R+++KK
Sbjct: 875 LSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVF 934
Query: 498 -----------CSAIAFLFWASPTLVS--VITFGVCILLKTPLTSGAVLSALA-TFRILQ 543
+ A F LV+ ++TF +L V SA+ +
Sbjct: 935 GITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLL---------VFSAIVFGAMAVG 985
Query: 544 EPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAR 603
+ P+ A+ VS I I++ + + K + + +++
Sbjct: 986 QVSSFAPD----YAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQF-------S 1034
Query: 604 EENFKKPT----IKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSIL-------GEIPRIS 651
F PT L +++ KG +A+ GS G GKS+++ + G + +
Sbjct: 1035 GVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSV-FLD 1093
Query: 652 GAAIK------VHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCAL---NQD 702
G IK + + V Q + +I ENI +G + R YEE++ +Q
Sbjct: 1094 GKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQF 1153
Query: 703 IEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQ 762
I+ D + VG++G LSGGQKQRI +ARA+ + + D+ SA+D + + ++
Sbjct: 1154 IDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTES-EKVVQE 1212
Query: 763 CLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQN--SELVR-QMK 819
L +T + H+L + ADL++V+++GK+++ G ++ L+A + +V Q
Sbjct: 1213 ALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSVQAG 1272
Query: 820 AHR 822
A R
Sbjct: 1273 AKR 1275
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 7e-30
Identities = 65/396 (16%), Positives = 136/396 (34%), Gaps = 50/396 (12%)
Query: 933 FIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCST 992
+ + G + A + ++ ++ I +FD + R +
Sbjct: 114 YTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTD 173
Query: 993 DQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQ-------VFPLFLVILGISIWYQA 1045
D S ++ I ++ A+ I+ W+ + P+ + GI +
Sbjct: 174 DVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILS 233
Query: 1046 YYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFH 1105
+ G E +A T+ F + + L R ++ +++ +
Sbjct: 234 SFTDKELHAYAKAGA-------VAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGI- 285
Query: 1106 NCGTMEWLCLRINLLFNFAFFLVLIILVT--------LPRSAIDPS------LAGLAATY 1151
+ N+ AF L+ + + L +
Sbjct: 286 ------KKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAF 339
Query: 1152 GLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSS--GKIE 1209
+ N+ N + + + + I + S P + G +E
Sbjct: 340 SVGQ------ASPNIEAFANARGAAYEVFKIIDNKPS----IDSFSKSGHKPDNIQGNLE 389
Query: 1210 LENLLVQYNPTLP--MVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
+N+ Y P+ +LKG+ + + +VG +G GKST +Q + R+ +P G +
Sbjct: 390 FKNIHFSY-PSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVS 448
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNL 1303
IDG DI I ++ LR + ++ Q+P+LF T+ N+
Sbjct: 449 IDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENI 484
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 225 bits (576), Expect = 4e-65
Identities = 49/125 (39%), Positives = 73/125 (58%), Gaps = 1/125 (0%)
Query: 1193 IKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLI 1252
+ + WPS G++ +++L +Y +L+ I+ + +++G++GRTGSGKSTL+
Sbjct: 5 NSHVKKDDIWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLL 64
Query: 1253 QALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQ 1312
A R++ G I IDGV I L+ R +IPQ +F GT R NLDP HSDQ
Sbjct: 65 SAFLRLLNTE-GEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQ 123
Query: 1313 EIWEV 1317
EIW+V
Sbjct: 124 EIWKV 128
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 5e-28
Identities = 60/255 (23%), Positives = 108/255 (42%), Gaps = 23/255 (9%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSIL------GEIPRISGAAIKVHG------KKAYVPQ 666
I G +V + G GSGKS+LLS+ L GEI +I G + +PQ
Sbjct: 43 SISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEI-QIDGVSWDSITLEQWRKAFGVIPQ 101
Query: 667 SSWIQTGTIRENILFGKDMRQSFYEE----VLEGCALNQDIEMWADGDLSVVGERGINLS 722
+I +GT R+N+ D + ++ V + L IE + V+ + G LS
Sbjct: 102 KVFIFSGTFRKNL----DPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLS 157
Query: 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEF 782
G KQ + LAR+V S + + + D+P + +D T + ++ L + TV+ ++E
Sbjct: 158 HGHKQLMCLARSVLSKAKILLLDEPSAHLDPVT-YQIIRRTLKQAFADCTVILCEARIEA 216
Query: 783 LDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRVPC 842
+ D LV+++ K+ Q +L V K + + + +V
Sbjct: 217 MLECDQFLVIEENKVRQYDSILELYHYPADRFVAGFIGSPKM-NFLPVKVTATAIDQVQV 275
Query: 843 QMSQITEERFARPIS 857
++ ++ P+
Sbjct: 276 ELPMPNRQQVWLPVE 290
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 169 bits (431), Expect = 3e-44
Identities = 81/453 (17%), Positives = 170/453 (37%), Gaps = 23/453 (5%)
Query: 877 WTVYSAFITLV--YKGALVPVILLCQVLFQALQMGSNYWIAWATDE----KRKVSREQLI 930
W + + +K L+ V + +L A + D+ + +
Sbjct: 10 WQTFRRLWPTIAPFKAGLI-VAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMP 68
Query: 931 GVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRC 990
V I L + ++ ++ K + + + P++FFD + +L+R
Sbjct: 69 LVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRI 128
Query: 991 STDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITT 1050
+ D V + L + ++ + I+M +WQ+ + +V+ I
Sbjct: 129 TYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKR 188
Query: 1051 ARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTM 1110
R +++ + + + + G + F + R + +
Sbjct: 189 FRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSAS 248
Query: 1111 EWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAG-LAATYGLNLNVLQAWVIWNLCNV 1169
I L+ + A L ++ S +D AG + + + +++ + +L NV
Sbjct: 249 SISDPIIQLIASLA--LAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRP--LKSLTNV 304
Query: 1170 ENK----MISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVL 1225
+ M + + + + E K+ ++G +E N+ Y L
Sbjct: 305 NAQFQRGMAACQTLFAILDSEQE-----KDEGKRVIDRATGDLEFRNVTFTYPGREVPAL 359
Query: 1226 KGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1285
+ I P K + +VGR+GSGKST+ + R + G IL+DG D+ L LR+++
Sbjct: 360 RNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQV 419
Query: 1286 SIIPQDPMLFQGTVRTN--LDPLEQHSDQEIWE 1316
+++ Q+ LF TV N E++S ++I E
Sbjct: 420 ALVSQNVHLFNDTVANNIAYARTEEYSREQIEE 452
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 151 bits (383), Expect = 3e-38
Identities = 104/559 (18%), Positives = 224/559 (40%), Gaps = 39/559 (6%)
Query: 274 WKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESL 333
L + +N + L+ + GK D S + ++ + + + S
Sbjct: 24 KAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSY 83
Query: 334 TQRQWYFGANRIGIRVRSALTVLIYKRSMAIK---FAGPSSGIIINMINVDVERIGDFFL 390
+ + + +V + ++ M + F S+G +++ I D E++
Sbjct: 84 IS---SYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSS 140
Query: 391 Y-IHRIWLLPVQVFLALVI-LYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIME 448
+ + + ++ Y + + L + + + + +++ R S M+
Sbjct: 141 GALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIR---VVSKRFRSISKNMQ 197
Query: 449 AKDARIKA-TSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFL--F 505
++ + LK + + + ++ K+ ++ R K + S +
Sbjct: 198 NTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQL 257
Query: 506 WASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYR 565
AS L V+ + LT+G + ++ L P+ +L + + + +
Sbjct: 258 IASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQT 317
Query: 566 IQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSK 625
+ + + +K +A+ ++ + + RE P ++ + +KI G
Sbjct: 318 LFAILDSEQEKDEGKRVIDRATG-DLEFRNVTFTYPGRE----VPALRNIN-LKIPAGKT 371
Query: 626 VAVCGSVGSGKSSLLSSIL-------GEIPRISGAAIKVHGKK------AYVPQSSWIQT 672
VA+ G GSGKS++ S I G I + G ++ + A V Q+ +
Sbjct: 372 VALVGRSGSGKSTIASLITRFYDIDEGHI-LMDGHDLREYTLASLRNQVALVSQNVHLFN 430
Query: 673 GTIRENILFGKDMRQSFYEEVLEGCAL-NQD--IEMWADGDLSVVGERGINLSGGQKQRI 729
T+ NI + + S E++ E + I +G +++GE G+ LSGGQ+QRI
Sbjct: 431 DTVANNIAYARTEEYSR-EQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRI 489
Query: 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLV 789
+ARA+ +S + I D+ SA+D + + L L +T L H+L ++ AD +
Sbjct: 490 AIARALLRDSPILILDEATSALDTES-ERAIQAALDELQKNRTSLVIAHRLSTIEQADEI 548
Query: 790 LVMKDGKIEQSGKYEDLIA 808
+V++DG I + G + +L+A
Sbjct: 549 VVVEDGIIVERGTHSELLA 567
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 165 bits (419), Expect = 9e-43
Identities = 73/453 (16%), Positives = 169/453 (37%), Gaps = 23/453 (5%)
Query: 877 WTVYSAFITLV--YKGALVPVILLCQVLFQALQMGSNYWIAWATDE----KRKVSREQLI 930
W + T + YK LV + V+ A + DE L
Sbjct: 10 WQTFKRLWTYIRLYKAGLVVSTI-ALVINAAADTYMISLLKPLLDEGFGNAESNFLRILP 68
Query: 931 GVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRC 990
+ + L + L+ ++ ++ + P+ FFD + +L+R
Sbjct: 69 FMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRI 128
Query: 991 STDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITT 1050
+ D V L + ++ ++ LM +WQ+ + +V+ + + ++
Sbjct: 129 TYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKR 188
Query: 1051 ARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTM 1110
R+++R + T + + + G + + + R + + T
Sbjct: 189 FRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQ 248
Query: 1111 EWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAG-LAATYGLNLNVLQAWVIWNLCNV 1169
I ++ + A L ++ + S G + +++ + L +V
Sbjct: 249 SIADPVIQMIASLA--LFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRP--LKALTSV 304
Query: 1170 ENK----MISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVL 1225
++ M + + + ++ +E N + E +G+++++++ Y L
Sbjct: 305 TSEFQRGMAACQTLFGLMDLETE----RDNGKYEAE-RVNGEVDVKDVTFTYQGKEKPAL 359
Query: 1226 KGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1285
++ + P K + +VGR+GSGKST+ R + G I +DG D+ L +LR
Sbjct: 360 SHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHF 419
Query: 1286 SIIPQDPMLFQGTVRTN--LDPLEQHSDQEIWE 1316
+++ Q+ LF T+ N +++ ++I +
Sbjct: 420 ALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQ 452
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 153 bits (390), Expect = 5e-39
Identities = 108/563 (19%), Positives = 222/563 (39%), Gaps = 47/563 (8%)
Query: 274 WKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESL 333
L ++ +N A L+ + G + + + +F + +
Sbjct: 24 KAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLRILPFMILGLMFVRGLSGF 83
Query: 334 TQRQWYFGANRIGIRVRSALTVLIYKRSMAIK---FAGPSSGIIINMINVDVERIGDFFL 390
Y + + V + ++ M + F S+G +++ I D E++
Sbjct: 84 ASS--YC-LSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATS 140
Query: 391 Y-IHRIWLLPVQ-VFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIME 448
+ I + L ++ + + + + + +S +++ R S M+
Sbjct: 141 RALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAIS---FVSKRFRKISRNMQ 197
Query: 449 AKDARIKAT-SETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAF---L 504
+ ++ + LK +V+ ++ K+ ++ R K L + +IA
Sbjct: 198 TAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMK-LVSAQSIADPVIQ 256
Query: 505 FWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLY 564
AS L +V+ ++ LT G + L P+ L + S + +
Sbjct: 257 MIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQ 316
Query: 565 RIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGS 624
+ + + ++ + + +D++ + + +E KP + I +G
Sbjct: 317 TLFGLMDLETERDNGKYEAERVNG-EVDVKDVTFTYQGKE----KPALSHVS-FSIPQGK 370
Query: 625 KVAVCGSVGSGKSSLLSSILGEIPR---ISGAAIKVHGKK-------------AYVPQSS 668
VA+ G GSGKS++ + L R + +I + G A V Q+
Sbjct: 371 TVALVGRSGSGKSTIAN--L--FTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNV 426
Query: 669 WIQTGTIRENILFGKDMRQSFYEEVLEGCAL-NQD--IEMWADGDLSVVGERGINLSGGQ 725
+ TI NI + + + E++ + + IE G +V+GE G +LSGGQ
Sbjct: 427 HLFNDTIANNIAYAAEGEYTR-EQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQ 485
Query: 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA 785
+QR+ +ARA+ ++ V I D+ SA+D + + L L KTVL H+L ++
Sbjct: 486 RQRVAIARALLRDAPVLILDEATSALDTES-ERAIQAALDELQKNKTVLVIAHRLSTIEQ 544
Query: 786 ADLVLVMKDGKIEQSGKYEDLIA 808
AD +LV+ +G+I + G++ DL+A
Sbjct: 545 ADEILVVDEGEIIERGRHADLLA 567
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 151 bits (384), Expect = 2e-38
Identities = 84/461 (18%), Positives = 172/461 (37%), Gaps = 55/461 (11%)
Query: 888 YKGALVPVILLCQVLFQALQMGSNYWIAWATDE----KRKVSREQLIGVFIFLSGGSSFF 943
YK + ++ ++ + M I +A D + E++ + I + F
Sbjct: 12 YKYRIF-ATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIF 70
Query: 944 ILGRAVLLAT---IAIKTAQRLFLNMITSVF----RAPISFFDSTPSSRILNRCSTDQST 996
++ R + +A T+ ++ ++ ++ F+ + ++++R D
Sbjct: 71 VIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQ 130
Query: 997 VDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELAR 1056
I L + I ++ + +M ++ L I I + R+L R
Sbjct: 131 TKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTR 190
Query: 1057 MVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLR 1116
A + E + G + ++ F E+ ++ + +
Sbjct: 191 ERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAA 250
Query: 1117 INLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYG-LNLNVLQAWV---------IWNL 1166
IN + + +V+ + A G + + L A+V + L
Sbjct: 251 INTVTDIGPIIVIG-------------VGAYLAISGSITVGTLAAFVGYLELLFGPLRRL 297
Query: 1167 CNVENK----MISVERILQFTNIPSEAPLVIKNSRPSPEWPS-SGKIELENLLVQYNPTL 1221
S++R+ Q + + IKN + G+I+++++ QYN
Sbjct: 298 VASFTTLTQSFASMDRVFQLIDEDYD----IKNGVGAQPIEIKQGRIDIDHVSFQYNDNE 353
Query: 1222 PMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD 1280
+LK I + GE + VG +G GKSTLI + R + + G+ILIDG +I
Sbjct: 354 APILKDINLSIEKGET-VAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGS 412
Query: 1281 LRSRLSIIPQDPMLFQGTVRTN-----LDPLEQHSDQEIWE 1316
LR+++ ++ QD +LF TV+ N +D+E+ E
Sbjct: 413 LRNQIGLVQQDNILFSDTVKENILLGRPTA----TDEEVVE 449
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 146 bits (372), Expect = 9e-37
Identities = 125/582 (21%), Positives = 232/582 (39%), Gaps = 77/582 (13%)
Query: 274 WKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHD----HSSYHYGLVLASVFLFAKT 329
+ + + P LI + + H +H + +
Sbjct: 13 KYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVI 72
Query: 330 VESLTQR-QWYFGANRIGIRVRSALTVLIYKR--SMAIK-FAGPSSGIIINMINVDVERI 385
V + + Y ++ + +Y +++ + +A G +I+ + DVE+
Sbjct: 73 VRPPIEFIRQYLA-QWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQT 131
Query: 386 GDFFLY-IHRIWLLPVQVFLALVI-LYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFH 443
DF L + IWL + + +AL I + ++ A + + + R
Sbjct: 132 KDFILTGLMNIWLDCITIIIALSIMFFLDVKLT---LAALFIFPFYILTVYVFFGRLRKL 188
Query: 444 SMIMEAKDARIKAT-SETLKSMRVLKLLSWE----QEFLKKLLRLREIERDSLKKYLYTC 498
+ A ++ E ++ + V+K + E + F KK + Y+
Sbjct: 189 TRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSF 248
Query: 499 SAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQ 558
+AI + + VI G + + +T G + + + +L P+ L + + Q
Sbjct: 249 AAINTV--TDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQ 306
Query: 559 TKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGE---------YAWDAREENFKK 609
+ S+ R+ + I ED + + I+I+ G Y + +
Sbjct: 307 SFASMDRVFQLIDED------YDIKNGVGAQPIEIKQGRIDIDHVSFQY------NDNEA 354
Query: 610 PTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR---ISGAAIKVHGKK----- 661
P +K + + I KG VA G G GKS+L++ L IPR ++ I + G
Sbjct: 355 PILKDIN-LSIEKGETVAFVGMSGGGKSTLIN--L--IPRFYDVTSGQILIDGHNIKDFL 409
Query: 662 --------AYVPQSSWIQTGTIRENILFGK----DMRQSFYEEVLEGC-ALNQD--IEMW 706
V Q + + + T++ENIL G+ D EEV+E N I
Sbjct: 410 TGSLRNQIGLVQQDNILFSDTVKENILLGRPTATD------EEVVEAAKMANAHDFIMNL 463
Query: 707 ADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMG 766
G + VGERG+ LSGGQKQR+ +AR +N + I D+ SA+D + + ++ L
Sbjct: 464 PQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLES-ESIIQEALDV 522
Query: 767 LLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808
L +T L H+L + AD ++V+++G I ++G + +LIA
Sbjct: 523 LSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIA 564
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 148 bits (376), Expect = 3e-37
Identities = 100/447 (22%), Positives = 181/447 (40%), Gaps = 63/447 (14%)
Query: 888 YKGALVPVILLCQVLFQALQMGSNYWIAWATDE---KRKVSR-EQLIGVFIFLSGGSSFF 943
+ L+ V + + L + S Y I D R+ + + + + +S
Sbjct: 35 HTFTLIMVFVFV-TVSSILGVLSPYLIGKTIDVVFVPRRFDLLPRYMLILGTIYALTSLL 93
Query: 944 ILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPY 1003
+ ++ T++ RL + + R P+ FFD TP I++R D ++ +
Sbjct: 94 FWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGN 153
Query: 1004 RLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWY--------QAYYITTARELA 1055
+ ++ L +I+M + + + L I+ +++ + Y+ R L
Sbjct: 154 SIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLG 213
Query: 1056 RMVGTRKAPILHHFSESIAGATTIRCFNQEN----RFLLRSHSLIDDYSCVTFHNCGTME 1111
++ G E I+G T I+ F +E +F + SL + + G +
Sbjct: 214 QLNG--------IIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFS-GVLP 264
Query: 1112 WLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYG-LNLNVLQAWV-------- 1162
L +N++ N F L+ G A + + + ++
Sbjct: 265 PL---MNMVNNLGFALISGF-------------GGWLALKDIITVGTIATFIGYSRQFTR 308
Query: 1163 -IWNLCNVENKMIS----VERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQY 1217
+ L N N + ERI + ++ E + G+IE +N+ Y
Sbjct: 309 PLNELSNQFNMIQMALASAERIFEILDLEEEKD----DPDAVELREVRGEIEFKNVWFSY 364
Query: 1218 NPTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMI 1276
+ P VLK IT PG+K + +VG TGSGK+T++ L R + G+IL+DG+DI I
Sbjct: 365 DKKKP-VLKDITFHIKPGQK-VALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKI 422
Query: 1277 GLQDLRSRLSIIPQDPMLFQGTVRTNL 1303
LRS + I+ QD +LF TV+ NL
Sbjct: 423 KRSSLRSSIGIVLQDTILFSTTVKENL 449
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 9e-23
Identities = 122/569 (21%), Positives = 243/569 (42%), Gaps = 60/569 (10%)
Query: 274 WKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESL 333
+L + F V++I + P+LI + + +++ ++
Sbjct: 36 TFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDLLPRYMLILGTIYALTSLLFW 95
Query: 334 TQRQWYFG-ANRIGIRVRSALTVLIYKRSMAIKFAGPSSG-IIINMINVDVERIGDFFL- 390
Q + + + R+R L + + + F G II +IN DV+ I +
Sbjct: 96 LQGKIMLTLSQDVVFRLRKELFEKLQRVPVGF-FDRTPHGDIISRVIN-DVDNINNVLGN 153
Query: 391 YIHRIWLLPVQVFLALVI-LYKNLGAAPAFAALFSTIFVMVSNTPLANR-QERFHSMIME 448
I + + V + A+++ N+ + L ++ ++++ ++ F+ +
Sbjct: 154 SIIQFFSGIVTLAGAVIMMFRVNVILS--LVTLSIVPLTVLITQIVSSQTRKYFYEN--Q 209
Query: 449 AKDARIKA-TSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWA 507
++ E + + V+KL + E++ ++K R+ E SL+K + +
Sbjct: 210 RVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNE----SLRKVGTKAQIFSGVLPP 265
Query: 508 SPTLVSVITF-GVCIL-----LKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKV 561
+V+ + F + LK +T G + + + R P+ L +MI
Sbjct: 266 LMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALA 325
Query: 562 SLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKI 620
S RI E + + +K + I+ + +++D KKP +K D I
Sbjct: 326 SAERIFEILDLEEEKDDPDAVELREVRGEIEFKNVWFSYDK-----KKPVLK--DITFHI 378
Query: 621 MKGSKVAVCGSVGSGKSSLLSSIL-------GEIPRISGAAIK------VHGKKAYVPQS 667
G KVA+ G GSGK+++++ ++ G+I + G I+ + V Q
Sbjct: 379 KPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQI-LVDGIDIRKIKRSSLRSSIGIVLQD 437
Query: 668 SWIQTGTIRENILFGK----DMRQSFYEEVLEGC-ALNQD--IEMWADGDLSVVGERGIN 720
+ + + T++EN+ +G D EE+ E + D I+ +G +V+ + G +
Sbjct: 438 TILFSTTVKENLKYGNPGATD------EEIKEAAKLTHSDHFIKHLPEGYETVLTDNGED 491
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMG-LLSQKTVLYTTHQ 779
LS GQ+Q + + RA +N + I D+ S VD T T Q M L+ KT + H+
Sbjct: 492 LSQGQRQLLAITRAFLANPKILILDEATSNVD--TKTEKSIQAAMWKLMEGKTSIIIAHR 549
Query: 780 LEFLDAADLVLVMKDGKIEQSGKYEDLIA 808
L + ADL++V++DG+I + GK+++LI
Sbjct: 550 LNTIKNADLIIVLRDGEIVEMGKHDELIQ 578
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 142 bits (361), Expect = 2e-35
Identities = 122/583 (20%), Positives = 229/583 (39%), Gaps = 84/583 (14%)
Query: 274 WKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSS-YHYGLVLASVFLFAKTVES 332
W L F V I P L+ V + D S G+++ V L
Sbjct: 22 WIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGDFSLVLKTGILMLIVALIGAVGGI 81
Query: 333 LTQRQWYFGAN---RIGIRVRSALTVLIYKRSMAIKFA-----GPSSGIIINMINVDVER 384
F + G +R L +++ ++ + SS +I + N DV +
Sbjct: 82 GCT---VFASYASQNFGADLRRDL----FRKVLSFSISNVNRFHTSS-LITRLTN-DVTQ 132
Query: 385 IGDFFLYIHRIWLL-PVQVFLALV-ILYKNLGAAPAFAA-----LFSTIFVMVSNTPLAN 437
+ + + + RI + P+ +V + N+ + + +++ PL
Sbjct: 133 LQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLFR 192
Query: 438 R-QERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLY 496
+ QE D + E L +RV++ E+ + R+ + +
Sbjct: 193 KIQEST--------DEVNRVVRENLLGVRVVRAFRREEYENE---NFRKANESLRRSIIS 241
Query: 497 TCSAIAFL-----FWASPTLVSVITFGVCILLKTPLTSGAVLSALA-TFRILQEPIYNLP 550
S I F F + +++V+ FG ++ + G++++ +I+ + +
Sbjct: 242 AFSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMM-IG 300
Query: 551 ELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFK-- 608
+++ I + S R+ E + +P + +D A+ + E + F+
Sbjct: 301 NILNFIVRASASAKRVLEVLN--------EKPAIEEADNALALPNVEGSVSFENVEFRYF 352
Query: 609 ---KPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR---ISGAAIKVHGKK- 661
P + + + GS VAV G GSGKS+L++ L IPR ++V
Sbjct: 353 ENTDPVLSGVN-FSVKPGSLVAVLGETGSGKSTLMN--L--IPRLIDPERGRVEVDELDV 407
Query: 662 ------------AYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQD---IEMW 706
+ VPQ + + +GTI+EN+ +G++ + +E++E + Q I
Sbjct: 408 RTVKLKDLRGHISAVPQETVLFSGTIKENLKWGRE--DATDDEIVEAAKIAQIHDFIISL 465
Query: 707 ADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMG 766
+G S V G N SGGQKQR+ +ARA+ V I DD S+VD T + L
Sbjct: 466 PEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRI-LDGLKR 524
Query: 767 LLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIAD 809
T T ++ AD +LV+ +GK+ G +++L+
Sbjct: 525 YTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEH 567
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 2e-24
Identities = 47/148 (31%), Positives = 79/148 (53%), Gaps = 10/148 (6%)
Query: 1173 MISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTF 1232
S +R+L+ + +E P + + G + EN+ +Y VL G+ +
Sbjct: 310 SASAKRVLE---VLNEKPAIEEADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSV 366
Query: 1233 -PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQD 1291
PG + V+G TGSGKSTL+ + R+++P GR+ +D +D+ + L+DLR +S +PQ+
Sbjct: 367 KPGSL-VAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQE 425
Query: 1292 PMLFQGTVRTNL---DPLEQHSDQEIWE 1316
+LF GT++ NL +D EI E
Sbjct: 426 TVLFSGTIKENLKWGRE--DATDDEIVE 451
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 126 bits (320), Expect = 1e-32
Identities = 61/206 (29%), Positives = 104/206 (50%), Gaps = 19/206 (9%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSIL-------GEIPRISGAAIK------VHGKKAYVP 665
+ S +A G G GKS++ S + GEI I G I + +V
Sbjct: 24 EAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI-TIDGQPIDNISLENWRSQIGFVS 82
Query: 666 QSSWIQTGTIRENILFGKDMRQSFYEEVLEGCAL-NQD--IEMWADGDLSVVGERGINLS 722
Q S I GTIREN+ +G + + E++ + L +E D + VGERG+ +S
Sbjct: 83 QDSAIMAGTIRENLTYGLEGDYTD-EDLWQVLDLAFARSFVENMPDQLNTEVGERGVKIS 141
Query: 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEF 782
GGQ+QR+ +ARA N + + D+ +++D+ + + ++ L L+ +T L H+L
Sbjct: 142 GGQRQRLAIARAFLRNPKILMLDEATASLDSES-ESMVQKALDSLMKGRTTLVIAHRLST 200
Query: 783 LDAADLVLVMKDGKIEQSGKYEDLIA 808
+ AD + ++ G+I SGK+ +L+A
Sbjct: 201 IVDADKIYFIEKGQITGSGKHNELVA 226
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 4e-26
Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 3/112 (2%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
+ ++ Y+ + +L+ I+ I G +G GKST+ L R +P+ G I
Sbjct: 2 LSARHVDFAYDDSEQ-ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLD--PLEQHSDQEIWEV 1317
IDG I I L++ RS++ + QD + GT+R NL ++D+++W+V
Sbjct: 61 IDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQV 112
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 2e-32
Identities = 68/287 (23%), Positives = 129/287 (44%), Gaps = 33/287 (11%)
Query: 542 LQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWD 601
++ L+ + + + + + +KE+ TE + + G ++
Sbjct: 4 SHHHHHHSSGLVPRGSHMFIDMENMFDLLKEE------TEVKDLPGAGPLRFQKGRIEFE 57
Query: 602 AREENF----KKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSIL-------GEIPRI 650
+F + T++ +M G +A+ G G+GKS++L + G I RI
Sbjct: 58 --NVHFSYADGRETLQDVS-FTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCI-RI 113
Query: 651 SGAAIK------VHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGC---ALNQ 701
G I + VPQ + + TI +NI +G+ + +EV ++
Sbjct: 114 DGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRV--TAGNDEVEAAAQAAGIHD 171
Query: 702 DIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761
I + +G + VGERG+ LSGG+KQR+ +AR + + + D+ SA+D +
Sbjct: 172 AIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSN-ERAIQ 230
Query: 762 QCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808
L + + +T + H+L + AD +LV+KDG I + G++E L++
Sbjct: 231 ASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLS 277
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 3e-27
Identities = 41/132 (31%), Positives = 68/132 (51%), Gaps = 6/132 (4%)
Query: 1173 MISVERILQFTNIPSEAPLVIKNSRPSPEWP-SSGKIELENLLVQYNPTLPMVLKGITCT 1231
I +E + +E +K+ + G+IE EN+ Y L+ ++ T
Sbjct: 22 FIDMENMFDLLKEETE----VKDLPGAGPLRFQKGRIEFENVHFSYADGRE-TLQDVSFT 76
Query: 1232 FPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQD 1291
+ + +VG +G+GKST+++ LFR + S G I IDG DIS + LRS + ++PQD
Sbjct: 77 VMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQD 136
Query: 1292 PMLFQGTVRTNL 1303
+LF T+ N+
Sbjct: 137 TVLFNDTIADNI 148
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 4e-32
Identities = 60/205 (29%), Positives = 109/205 (53%), Gaps = 19/205 (9%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSIL------GEIPRISGAAIK------VHGKKAYVPQ 666
I G+ A+ G GSGKS++ + G+I +I G + + VPQ
Sbjct: 42 FIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDI-KIGGKNVNKYNRNSIRSIIGIVPQ 100
Query: 667 SSWIQTGTIRENILFGKDMRQSFYEEVLEGC---ALNQDIEMWADGDLSVVGERGINLSG 723
+ + TI+ NIL+GK + EEV++ L IE ++VG +G+ LSG
Sbjct: 101 DTILFNETIKYNILYGKL--DATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSG 158
Query: 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFL 783
G++QRI +AR + + + IFD+ S++D+ T +LF++ + L +T++ H+L +
Sbjct: 159 GERQRIAIARCLLKDPKIVIFDEATSSLDSKT-EYLFQKAVEDLRKNRTLIIIAHRLSTI 217
Query: 784 DAADLVLVMKDGKIEQSGKYEDLIA 808
+A+ ++++ GKI + G ++DL+
Sbjct: 218 SSAESIILLNKGKIVEKGTHKDLLK 242
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 98.8 bits (247), Expect = 6e-23
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 4/100 (4%)
Query: 1206 GKIELENLLVQYN--PTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG 1263
IE ++ Y LK I P +VG TGSGKST+ + L+R + G
Sbjct: 16 VNIEFSDVNFSYPKQTNHR-TLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEG 74
Query: 1264 GRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNL 1303
I I G +++ +RS + I+PQD +LF T++ N+
Sbjct: 75 -DIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNI 113
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 3e-31
Identities = 63/220 (28%), Positives = 110/220 (50%), Gaps = 25/220 (11%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSIL-------GEIPRISGAAIK------VHGKKAYV 664
+ I +G + + G GSGKS+L I G++ I G + + + V
Sbjct: 30 LSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV-LIDGHDLALADPNWLRRQVGVV 88
Query: 665 PQSSWIQTGTIRENILFGK-DMRQSFYEEVLEGCAL-NQD--IEMWADGDLSVVGERGIN 720
Q + + +I +NI M E+V+ L I +G ++VGE+G
Sbjct: 89 LQDNVLLNRSIIDNISLANPGMSV---EKVIYAAKLAGAHDFISELREGYNTIVGEQGAG 145
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQL 780
LSGGQ+QRI +ARA+ +N + IFD+ SA+D + H+ + + + +TV+ H+L
Sbjct: 146 LSGGQRQRIAIARALVNNPKILIFDEATSALDYES-EHVIMRNMHKICKGRTVIIIAHRL 204
Query: 781 EFLDAADLVLVMKDGKIEQSGKYEDLIADQN---SELVRQ 817
+ AD ++VM+ GKI + GK+++L+++ S L +
Sbjct: 205 STVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 244
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 1e-29
Identities = 33/97 (34%), Positives = 55/97 (56%)
Query: 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGR 1265
I N+ +Y P P++L I + + IG+VGR+GSGKSTL + + R P G+
Sbjct: 6 HDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 1266 ILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTN 1302
+LIDG D+++ LR ++ ++ QD +L ++ N
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDN 102
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 7e-29
Identities = 57/231 (24%), Positives = 94/231 (40%), Gaps = 24/231 (10%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSIL-------GEIPRISGAAIK------VHGKKAYV 664
+ G A+ G GSGKS++ + + G++ + G + +H + A V
Sbjct: 40 FTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKV-LLDGEPLVQYDHHYLHTQVAAV 98
Query: 665 PQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCAL-NQD--IEMWADGDLSVVGERGINL 721
Q + + RENI +G + EE+ I + G + VGE G L
Sbjct: 99 GQEPLLFGRSFRENIAYGLTRTPTM-EEITAVAMESGAHDFISGFPQGYDTEVGETGNQL 157
Query: 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--TVLYTTHQ 779
SGGQ+Q + LARA+ + I D+ SA+DA ++ L TVL T Q
Sbjct: 158 SGGQRQAVALARALIRKPRLLILDNATSALDAGN-QLRVQRLLYESPEWASRTVLLITQQ 216
Query: 780 LEFLDAADLVLVMKDGKIEQSGKYEDLIADQN--SELVR-QMKAHRKSLDQ 827
L + A +L +K+G + + G + L+ +V +
Sbjct: 217 LSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSMVEALAAPSDAAAHH 267
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 4e-24
Identities = 34/116 (29%), Positives = 61/116 (52%), Gaps = 5/116 (4%)
Query: 1205 SGKIELENLLVQYNPTLP--MVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPS 1262
G ++ +++ Y P P VL+G+T T K +VG GSGKST+ L + +P+
Sbjct: 14 KGLVKFQDVSFAY-PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 1263 GGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLD--PLEQHSDQEIWE 1316
GG++L+DG + L ++++ + Q+P+LF + R N+ + +EI
Sbjct: 73 GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITA 128
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 6e-24
Identities = 40/211 (18%), Positives = 79/211 (37%), Gaps = 26/211 (12%)
Query: 622 KGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAI-KVHGKKAYVPQ--SSWIQTG 673
G KV + G GSGK++LL +I G +P I+G + K+ Y ++
Sbjct: 29 NGEKVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGV 88
Query: 674 TIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN-LSGGQKQRIQLA 732
T+ + + ++++ + LE + E R + LS GQ ++ +
Sbjct: 89 TVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILR--------RKLYKLSAGQSVLVRTS 140
Query: 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--KTVLYTTH-QLEFLDAAD-L 788
A+ S ++ D+PF VDA + + + + K + TH +
Sbjct: 141 LALASQPEIVGLDEPFENVDAAR-----RHVISRYIKEYGKEGILVTHELDMLNLYKEYK 195
Query: 789 VLVMKDGKIEQSGKYEDLIADQNSELVRQMK 819
+ +++ +L+ E R
Sbjct: 196 AYFLVGNRLQGPISVSELLESSIVEGERNDA 226
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 65.1 bits (159), Expect = 2e-11
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 11/99 (11%)
Query: 1208 IELENLLVQYNPTLP--MVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGR 1265
I+L+N+ + + L+ I GEK + ++G GSGK+TL++A+ ++ P G
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVNGEK-VIILGPNGSGKTTLLRAISGLL-PYSGN 59
Query: 1266 ILIDGVDISMIGLQDLRSRLSIIPQDP--MLFQGTVRTN 1302
I I+G+++ +R+ + P TV
Sbjct: 60 IFINGMEVR-----KIRNYIRYSTNLPEAYEIGVTVNDI 93
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 98.8 bits (247), Expect = 5e-23
Identities = 56/225 (24%), Positives = 100/225 (44%), Gaps = 21/225 (9%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQS-SWIQTGTIR 676
+ KG +AV G G GKS+LL +LG I G I+V+ +VPQ S ++
Sbjct: 26 FDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGK-IEVYQSIGFVPQFFSSPFAYSVL 84
Query: 677 ENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVG-----ERGIN-LSGGQKQRIQ 730
+ +L G+ + + + D ++ A L + +R LSGGQ+Q I
Sbjct: 85 DIVLMGRSTHINTFAKPKS-----HDYQV-AMQALDYLNLTHLAKREFTSLSGGQRQLIL 138
Query: 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ---KTVLYTTHQLEF-LDAA 786
+ARA+ S + + D+P SA+D + L+ L+Q TV++TTHQ + A
Sbjct: 139 IARAIASECKLILLDEPTSALDLANQDIVLS--LLIDLAQSQNMTVVFTTHQPNQVVAIA 196
Query: 787 DLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPP 831
+ L++ + G+ +++ +N + + +
Sbjct: 197 NKTLLLNKQNFKF-GETRNILTSENLTALFHLPMFEQQAQYKESF 240
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 1e-08
Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 14/85 (16%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
+ +ENL Y + + + + V+G+ G GKSTL+ L + P G+I
Sbjct: 5 LSVENLGFYYQAE-NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE 63
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDP 1292
+ + +PQ
Sbjct: 64 VYQ-------------SIGFVPQFF 75
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 98.4 bits (246), Expect = 1e-22
Identities = 53/221 (23%), Positives = 94/221 (42%), Gaps = 36/221 (16%)
Query: 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK---------------AY 663
+I KG K + G G+GK++LL+ + P SG + + GK +
Sbjct: 43 QIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGT-VNLFGKMPGKVGYSAETVRQHIGF 101
Query: 664 VPQS---SWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVG----- 715
V S + + + + ++ G Y+++ + + A L +VG
Sbjct: 102 VSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDD-----EIRNE-AHQLLKLVGMSAKA 155
Query: 716 ERGI-NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--- 771
++ I LS G+KQR+ +ARA+ V I D+P + +D L L
Sbjct: 156 QQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFI-ARESLLSILDSLSDSYPTL 214
Query: 772 TVLYTTHQLEF-LDAADLVLVMKDGKIEQSGKYEDLIADQN 811
++Y TH +E +L++KDG+ Q G ED++ +N
Sbjct: 215 AMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILTSEN 255
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 3e-09
Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 6/87 (6%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1266
I+L+ + +LK I+ G+K + G G+GK+TL+ L + G +
Sbjct: 22 IQLDQIGRMKQGKT--ILKKISWQIAKGDK-WILYGLNGAGKTTLLNILNAYEPATSGTV 78
Query: 1267 LIDGVDISMIG--LQDLRSRLSIIPQD 1291
+ G +G + +R + +
Sbjct: 79 NLFGKMPGKVGYSAETVRQHIGFVSHS 105
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 97.4 bits (243), Expect = 6e-21
Identities = 53/273 (19%), Positives = 107/273 (39%), Gaps = 33/273 (12%)
Query: 567 QEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPT---IKLTDKMKIMKG 623
+ ++ +N K E +V+ + + + K + D + +G
Sbjct: 235 KGYLPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVDNGEAKEG 294
Query: 624 SKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-AYVPQSSWI-QTGTIREN--- 678
+ + G G GK++ ++GEI G+ + + +Y PQ + GT+++
Sbjct: 295 EIIGILGPNGIGKTTFARILVGEITADEGS-VTPEKQILSYKPQRIFPNYDGTVQQYLEN 353
Query: 679 -ILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI-NLSGGQKQRIQLARAVY 736
F+EEV + L++ +E + +LSGG+ Q++ +A +
Sbjct: 354 ASKDALSTSSWFFEEVTKRLNLHRLLE------------SNVNDLSGGELQKLYIAATLA 401
Query: 737 SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--KTVLYTTHQLEFLDA-ADLVLVMK 793
+D+Y+ D P S +D + K + + + H L D AD ++V K
Sbjct: 402 KEADLYVLDQPSSYLDVEERYIVAK-AIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFK 460
Query: 794 DGKIEQSGKYEDLIADQNSELVRQMKAHRKSLD 826
G+ E++G +A L M + L+
Sbjct: 461 -GEPEKAG-----LATSPVTLKTGMNEFLRELE 487
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 84.7 bits (210), Expect = 8e-17
Identities = 42/216 (19%), Positives = 74/216 (34%), Gaps = 34/216 (15%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENI 679
+ + V G G GK+++L + GEI + R
Sbjct: 22 PKNNTILGVLGKNGVGKTTVLKILAGEI--------IPNFGDPNSKVGKDEVLKRFRGKE 73
Query: 680 L---FGKDM-------RQSFY----EEVLEGC---------ALNQDIEMWADGDLSVVGE 716
+ F + + Y + L+G + E+ +++ +
Sbjct: 74 IYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWN 133
Query: 717 RGI-NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLY 775
+ LSGG QR+ +A ++ +DVYIFD P S +D + + LL K V+
Sbjct: 134 KDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRE-RMNMAKAIRELLKNKYVIV 192
Query: 776 TTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLIADQ 810
H L LD DL+ ++ + A
Sbjct: 193 VDHDLIVLDYLTDLIHIIYGESSVYGRVSKSYAARV 228
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 4e-07
Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 11/81 (13%)
Query: 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRS 1283
L + IG++G G GK+T + L + G + + +S
Sbjct: 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSY-------- 334
Query: 1284 RLSIIPQDPMLFQGTVRTNLD 1304
+ I + GTV+ L+
Sbjct: 335 KPQRIFPNY---DGTVQQYLE 352
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 2e-04
Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Query: 1233 PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLR-SRLSIIPQD 1291
+GV+G+ G GK+T+++ L + P+ G + L+ R + ++
Sbjct: 24 NNTI-LGVLGKNGVGKTTVLKILAGEIIPNFGD--PNSKVGKDEVLKRFRGKEIYNYFKE 80
Query: 1292 PM 1293
Sbjct: 81 LY 82
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 94.7 bits (236), Expect = 6e-20
Identities = 43/255 (16%), Positives = 100/255 (39%), Gaps = 37/255 (14%)
Query: 576 KKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSG 635
+ D+ D + +++ + ++ + ++ + + + G G+G
Sbjct: 332 EALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLN-VEEGEFSDSEILVMMGENGTG 390
Query: 636 KSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQ-TGTIRENILFGKDMR-----QSF 689
K++L+ + G + G + PQ + GT+R+ LF K +R F
Sbjct: 391 KTTLIKLLAGALKPDEGQ-DIPKLNVSMKPQKIAPKFPGTVRQ--LFFKKIRGQFLNPQF 447
Query: 690 YEEVLEGCALNQDIEMWADGDLSVVGERGI-NLSGGQKQRIQLARAVYSNSDVYIFDDPF 748
+V++ ++ + ++ + +LSGG+ QR+ + A+ +D+Y+ D+P
Sbjct: 448 QTDVVKPLRIDD------------IIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPS 495
Query: 749 SAVDAHTGTHLFKQCLMGLL------SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ-- 799
+ +D+ + ++ ++KT H AD V+V + +
Sbjct: 496 AYLDSEQ-----RIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAH 550
Query: 800 SGKYEDLIADQNSEL 814
+ E L+ N L
Sbjct: 551 ARAPESLLTGCNRFL 565
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 88.5 bits (220), Expect = 5e-18
Identities = 44/221 (19%), Positives = 83/221 (37%), Gaps = 34/221 (15%)
Query: 607 FKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP----RISGAAIKVHGKKA 662
+ + KL G + + G+ G GKS+ L + G+ R K
Sbjct: 87 YSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKY 146
Query: 663 Y-------------------VPQSSWIQT--GTIRENILFGKDMRQSFYEEVLEGCALNQ 701
+ + + ++ I+ + ++ + E+ E + +
Sbjct: 147 FRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPE--DVKR 204
Query: 702 DIEMWADGDLSVVGERGI-NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLF 760
I++ L V +R I LSGG+ QR + + +DVY+FD+P S +D +
Sbjct: 205 YIKIL---QLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAA 261
Query: 761 KQCLMGLLSQ-KTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799
+ + LL+ K V+ H L LD +D V ++
Sbjct: 262 QI-IRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVY 301
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 2e-08
Identities = 21/136 (15%), Positives = 49/136 (36%), Gaps = 9/136 (6%)
Query: 1190 PLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKS 1249
L + + + + + + VL F + + ++G G+GK+
Sbjct: 333 ALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKT 392
Query: 1250 TLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDP--MLFQGTVRTNLDPLE 1307
TLI+ L ++P G+ + ++SM +++ LF +R
Sbjct: 393 TLIKLLAGALKPDEGQDIPKL-NVSM-----KPQKIAPKFPGTVRQLFFKKIRGQFLN-P 445
Query: 1308 QHSDQEIWEVKISKLL 1323
Q + ++I ++
Sbjct: 446 QFQTDVVKPLRIDDII 461
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 7e-05
Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 13/91 (14%)
Query: 1233 PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI-----------LIDGVDISMIGLQDL 1281
PG+ +G+VG G GKST ++ L +P+ GR G ++ + L
Sbjct: 102 PGQV-LGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160
Query: 1282 RSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQ 1312
+ I + + R P+++ +
Sbjct: 161 EDDIKAIIKPQYVDN-IPRAIKGPVQKVGEL 190
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 94.3 bits (235), Expect = 9e-20
Identities = 48/246 (19%), Positives = 105/246 (42%), Gaps = 23/246 (9%)
Query: 567 QEFIKEDNQK-KPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSK 625
Q ++K++N + +P +K S+ + +++ ++ + +I KG
Sbjct: 326 QGYLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLE-VEPGEIRKGEV 384
Query: 626 VAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQ-SSWIQTGTIRENI---LF 681
+ + G G GK++ + + G G ++ AY PQ GT+ E +
Sbjct: 385 IGIVGPNGIGKTTFVKMLAGVEEPTEGK-VEWDLTVAYKPQYIKAEYEGTVYELLSKIDS 443
Query: 682 GKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDV 741
K + E+L+ + + V + LSGG+ QR+ +A + ++D+
Sbjct: 444 SKLNSNFYKTELLKPLGIIDLYD-------RNVED----LSGGELQRVAIAATLLRDADI 492
Query: 742 YIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--KTVLYTTHQLEFLDA-ADLVLVMKDGKIE 798
Y+ D+P + +D + + + L+ + KT L H + +D +D ++V +G+
Sbjct: 493 YLLDEPSAYLDVEQRLAVSR-AIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVF-EGEPG 550
Query: 799 QSGKYE 804
+ G+
Sbjct: 551 RHGRAL 556
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 90.1 bits (224), Expect = 2e-18
Identities = 48/228 (21%), Positives = 82/228 (35%), Gaps = 53/228 (23%)
Query: 607 FKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP------------------ 648
+ L + G V + G G+GK++ + + G++
Sbjct: 101 YGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFR 160
Query: 649 ---------RISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEV----LE 695
R+ I+ K YV G +RE +L D F E V LE
Sbjct: 161 GNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRE-LLKKVDEVGKFEEVVKELELE 219
Query: 696 GCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHT 755
L++++ LSGG+ QR+ +A A+ + Y FD+P S +D
Sbjct: 220 N-VLDRELH---------------QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQ 263
Query: 756 GTHLFKQCLMGLLSQ--KTVLYTTHQLEFLDA-ADLVLVMKDGKIEQS 800
+ + ++ L+ K VL H L LD +D++ V+
Sbjct: 264 RLKVAR--VIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYG 309
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 5e-07
Identities = 21/100 (21%), Positives = 42/100 (42%), Gaps = 21/100 (21%)
Query: 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRS 1283
L+ + IG+VG G GK+T ++ L V EP+ G++ D
Sbjct: 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDL------------- 417
Query: 1284 RLSIIPQDPML---FQGTVR---TNLDPLEQHSDQEIWEV 1317
++ + + ++GTV + +D + +S+ E+
Sbjct: 418 --TVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTEL 455
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 8e-07
Identities = 18/108 (16%), Positives = 44/108 (40%), Gaps = 18/108 (16%)
Query: 1233 PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGR------ILIDGVDISMIGLQDLRSR-- 1284
G +G+VG G+GK+T ++ L + P+ +I + + R +
Sbjct: 116 DGMV-VGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNG 174
Query: 1285 -LSIIPQDPM------LFQGTVRTNLDPLEQHS--DQEIWEVKISKLL 1323
+ + + +G VR L +++ ++ + E+++ +L
Sbjct: 175 EIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVL 222
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 88.1 bits (219), Expect = 5e-18
Identities = 47/244 (19%), Positives = 104/244 (42%), Gaps = 23/244 (9%)
Query: 567 QEFIKEDNQKKPITEPTSKASDVAIDIEAGE-YAWDAREENFKKPTIKLTDKMKIMKGSK 625
+ ++K++N + E + ++IE + +++ ++ + +I KG
Sbjct: 256 RGYLKDENVRFRPYEIKFTKTGERVEIERETLVTYPRLVKDYGSFRLE-VEPGEIKKGEV 314
Query: 626 VAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQ-SSWIQTGTIRENI---LF 681
+ + G G GK++ + + G G I+ AY PQ GT+ E +
Sbjct: 315 IGIVGPNGIGKTTFVKMLAGVEEPTEGK-IEWDLTVAYKPQYIKADYEGTVYELLSKIDA 373
Query: 682 GKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDV 741
K + E+L+ + + + LSGG+ QR+ +A + ++D+
Sbjct: 374 SKLNSNFYKTELLKPLGIIDLYDREVN-----------ELSGGELQRVAIAATLLRDADI 422
Query: 742 YIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--KTVLYTTHQLEFLDA-ADLVLVMKDGKIE 798
Y+ D+P + +D + + + L+ + KT L H + +D +D ++V +G+
Sbjct: 423 YLLDEPSAYLDVEQRLAVSR-AIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVF-EGEPG 480
Query: 799 QSGK 802
+ G+
Sbjct: 481 KYGR 484
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 4e-15
Identities = 49/210 (23%), Positives = 84/210 (40%), Gaps = 25/210 (11%)
Query: 611 TIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGE-IPRISGAAIKVHGKKAYVPQSSW 669
L + +G V + G G+GKS+ + + G+ IP + G G +
Sbjct: 35 AFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNE- 93
Query: 670 IQTGTIRENILFGKDMRQSFYE---------------EVLEGCALNQDIEMWADG-DLSV 713
+Q + L ++R E+L+ +E +L
Sbjct: 94 LQNYFEK---LKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELEN 150
Query: 714 VGERGI-NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-K 771
V ER I +LSGG+ QR+ +A A+ N+ Y FD+P S +D + + + L + K
Sbjct: 151 VLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNA-ARAIRRLSEEGK 209
Query: 772 TVLYTTHQLEFLDA-ADLVLVMKDGKIEQS 800
+VL H L LD +D++ V+
Sbjct: 210 SVLVVEHDLAVLDYLSDIIHVVYGEPGVYG 239
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 1e-07
Identities = 25/136 (18%), Positives = 49/136 (36%), Gaps = 24/136 (17%)
Query: 1188 EAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSG 1247
+ + E + L+ Y L+ + IG+VG G G
Sbjct: 268 PYEIKFTKTGERVEIERETLVTYPRLVKDYGS---FRLEVEPGEIKKGEVIGIVGPNGIG 324
Query: 1248 KSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPML---FQGTVR---T 1301
K+T ++ L V EP+ G+I D ++ + + ++GTV +
Sbjct: 325 KTTFVKMLAGVEEPTEGKIEWDL---------------TVAYKPQYIKADYEGTVYELLS 369
Query: 1302 NLDPLEQHSDQEIWEV 1317
+D + +S+ E+
Sbjct: 370 KIDASKLNSNFYKTEL 385
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 1e-05
Identities = 21/137 (15%), Positives = 49/137 (35%), Gaps = 23/137 (16%)
Query: 1208 IELENLLV----QYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPS- 1262
+E L +Y VL + G +G+VG G+GKST ++ L + P+
Sbjct: 18 SHMEQLEEDCVHRYGVN-AFVLYRLPVVKEGMV-VGIVGPNGTGKSTAVKILAGQLIPNL 75
Query: 1263 -----GGRILIDGVDISMIGLQDLRSR---LSIIPQDPM------LFQGTVRTNLDPLEQ 1308
+I + + + + + + + +G V L ++
Sbjct: 76 CGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADE 135
Query: 1309 HS--DQEIWEVKISKLL 1323
++ + +++ +L
Sbjct: 136 TGKLEEVVKALELENVL 152
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 83.8 bits (208), Expect = 9e-18
Identities = 52/235 (22%), Positives = 94/235 (40%), Gaps = 45/235 (19%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRE 677
+ I +G + V G+ GSGKS+LL + G I SG + G++ + IR
Sbjct: 28 LVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG-DVLYDGERKKGYE--------IRR 78
Query: 678 NI----------LFGKDMRQSFYEEV---LEGCALNQDIEMWADGDLSVVGERGI----- 719
NI F + ++EV ++ ++D + VG
Sbjct: 79 NIGIAFQYPEDQFFA----ERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDR 134
Query: 720 ---NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-----K 771
LSGG+K+R+ +A + D+ I D+P +D K L+ ++ + K
Sbjct: 135 VPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREG-----KTDLLRIVEKWKTLGK 189
Query: 772 TVLYTTHQLEF-LDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSL 825
TV+ +H +E ++ D V+V++ GK G + + + + L
Sbjct: 190 TVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYDPRFFTSKMLVMRRL 244
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 80.3 bits (199), Expect = 1e-16
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 8/99 (8%)
Query: 1207 KIELENLLVQYNPTLPM---VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG 1263
+IE+ N+ ++ P+ L+ ++ + + V G TGSGKSTL+Q + ++EP+
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS 61
Query: 1264 GRILIDGVDISMIGLQDLRSRLSIIPQDP--MLFQGTVR 1300
G +L DG ++R + I Q P F V
Sbjct: 62 GDVLYDGERKK---GYEIRRNIGIAFQYPEDQFFAERVF 97
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 79.9 bits (198), Expect = 7e-17
Identities = 38/201 (18%), Positives = 85/201 (42%), Gaps = 33/201 (16%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKA--------YVPQSSW 669
M I KG+ V G G GK++LL +I + + G I +G ++P+
Sbjct: 30 MTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGE-IIYNGVPITKVKGKIFFLPEEII 88
Query: 670 I-QTGTIRENILF-----GKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723
+ + ++ + + G + ++ + LE ++ + ++ LS
Sbjct: 89 VPRKISVEDYLKAVASLYGVKVNKNEIMDALESV------------EVLDLKKKLGELSQ 136
Query: 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--TVLYTTHQLE 781
G +R+QLA + N+++Y+ DDP A+D + + ++ +L +K ++ + +L
Sbjct: 137 GTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHK-VLKSILEILKEKGIVIISSREELS 195
Query: 782 FLDAADLVLVMKDGKIEQSGK 802
+ D+ + + K
Sbjct: 196 Y---CDVNENLHKYSTKIDKK 213
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 59.4 bits (145), Expect = 6e-10
Identities = 25/102 (24%), Positives = 51/102 (50%), Gaps = 9/102 (8%)
Query: 1204 SSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG 1263
K+E+ +L V Y+ VL+ IT T + G G GK+TL++ + ++P
Sbjct: 7 HGSKLEIRDLSVGYDKP---VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLK 63
Query: 1264 GRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQG-TVRTNLD 1304
G I+ +GV I+ ++ ++ +P++ ++ + +V L
Sbjct: 64 GEIIYNGVPIT-----KVKGKIFFLPEEIIVPRKISVEDYLK 100
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 78.7 bits (195), Expect = 5e-16
Identities = 54/234 (23%), Positives = 95/234 (40%), Gaps = 54/234 (23%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRE 677
M I +G A+ G G GKS+L + G + SG I K R+
Sbjct: 29 MNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGR-ILFDNKP----------IDYSRK 77
Query: 678 NILFGKDMRQS------------FYEEVLEGCA---LNQDI---EMW--ADGDLSVVG-- 715
I +R+S F V + + +N + E+ D L G
Sbjct: 78 GI---MKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIE 134
Query: 716 ---ERGI-NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ- 770
++ LS GQK+R+ +A + V I D+P + +D + +M LL +
Sbjct: 135 HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDP-----MGVSEIMKLLVEM 189
Query: 771 -----KTVLYTTHQLEF-LDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQM 818
T++ TH ++ D V VMK+G++ G +++ A++ E++R++
Sbjct: 190 QKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEK--EVIRKV 241
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 76.0 bits (188), Expect = 5e-15
Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 5/97 (5%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
+++E L Y+ LKGI + ++G G GKSTL Q +++PS GRIL
Sbjct: 8 LKVEELNYNYSDGTH-ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRIL 66
Query: 1268 IDGVDISM--IGLQDLRSRLSIIPQDP--MLFQGTVR 1300
D I G+ LR + I+ QDP LF +V
Sbjct: 67 FDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVY 103
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 74.1 bits (183), Expect = 1e-14
Identities = 54/208 (25%), Positives = 87/208 (41%), Gaps = 47/208 (22%)
Query: 626 VAVCGSVGSGKSSLLSSILG-EIPRISGAAIKVHGKK-----------AYVPQS------ 667
+ G G+GKS L I G P ++++G +VPQ
Sbjct: 27 CVLLGPTGAGKSVFLELIAGIVKP--DRGEVRLNGADITPLPPERRGIGFVPQDYALFPH 84
Query: 668 -SWIQTGTIRENILFG--KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN-LSG 723
++ NI +G R V E ++ + +R LSG
Sbjct: 85 L------SVYRNIAYGLRNVERVERDRRVREMAEKLG---------IAHLLDRKPARLSG 129
Query: 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK----TVLYTTH- 778
G++QR+ LARA+ + + D+P SAVD T L ++ L + Q+ +L+ TH
Sbjct: 130 GERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEE-LRFV--QREFDVPILHVTHD 186
Query: 779 QLEFLDAADLVLVMKDGKIEQSGKYEDL 806
+E AD V VM +G+I + GK ++L
Sbjct: 187 LIEAAMLADEVAVMLNGRIVEKGKLKEL 214
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 78.0 bits (191), Expect = 2e-14
Identities = 98/645 (15%), Positives = 183/645 (28%), Gaps = 182/645 (28%)
Query: 531 AVLSALATFRILQEP--IYNLPELISMIAQTKVSLYRIQEFIKEDNQK------KPI-TE 581
++LS I+ + L + + + Q+F++E + PI TE
Sbjct: 44 SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV--QKFVEEVLRINYKFLMSPIKTE 101
Query: 582 PTSKASDVAIDIEAGEYAWDAREENFKK-------PTIKLTDKMKIMK-GSKVAVCGSVG 633
+ + IE + ++ + F K P +KL + ++ V + G +G
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQV-FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG 160
Query: 634 SGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIR--ENILFGKDMRQSFYE 691
SGK+ + + K+ W+ E +L +M Q
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIF----------WLNLKNCNSPETVL---EMLQKLLY 207
Query: 692 EVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNS-----DVYIFDD 746
++ D + D S + I+ S + R L Y N +V +
Sbjct: 208 QI--------DPNWTSRSDHSSNIKLRIH-SIQAELRRLLKSKPYENCLLVLLNVQ---N 255
Query: 747 PFSAVDAHTGTHLFK-QCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYED 805
A +A F C +L TT F D + I
Sbjct: 256 A-KAWNA------FNLSC--------KILLTT---RFKQVTDFLSAATTTHISLDHHSMT 297
Query: 806 LIADQNSELVRQ---MKAHRKSLDQVNPPQEDKCLSRVPCQMSQITE------------- 849
L D+ L+ + + + L P + P ++S I E
Sbjct: 298 LTPDEVKSLLLKYLDCRP--QDL----PREVLTTN---PRRLSIIAESIRDGLATWDNWK 348
Query: 850 ----ERFARPISCGEFSGRSQDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQA 905
++ I E S + E + ++ A +P ILL
Sbjct: 349 HVNCDKLTTII---ESSLNVLEPA-EYRK----MFDRLSVFP-PSAHIPTILLSL----- 394
Query: 906 LQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQ--RLF 963
W + V + L + L+ K + +
Sbjct: 395 ------IWFDVIKSDVMVVVNK-----------------LHKYSLVE----KQPKESTIS 427
Query: 964 LNMITSVFRAPISFFDSTPS--SRILNR-------CSTDQSTVDTD------IPYRLAGL 1008
+ I + + ++ + I++ S D D I + L +
Sbjct: 428 IPSIYLELKVKL---ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI 484
Query: 1009 -------AFALIQL-LSII---ILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARM 1057
F ++ L + I AW L L +Y+ Y + R+
Sbjct: 485 EHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERL 544
Query: 1058 VGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCV 1102
V + F I I + LLR +L+ + +
Sbjct: 545 VNA-----ILDFLPKI-EENLICS---KYTDLLRI-ALMAEDEAI 579
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 71.0 bits (173), Expect = 2e-12
Identities = 112/706 (15%), Positives = 210/706 (29%), Gaps = 228/706 (32%)
Query: 185 DIPLLREED--DEFLCKNISTFASAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQSE 242
DI + E+ D F CK++ + + K E+ HI +
Sbjct: 20 DILSVFEDAFVDNFDCKDVQDM------------------PKSILSKEEIDHIIMSKDAV 61
Query: 243 TANDASSLLEESLRKQKTDATSLPQVIIHAVWKSLALNAAFAGVNTIAS-YIGPFLIT-N 300
+ L L KQ+ +++ V + L +N F ++ I + P ++T
Sbjct: 62 SGTLR--LFWTLLSKQE-------EMVQKFVEEVLRINYKFL-MSPIKTEQRQPSMMTRM 111
Query: 301 FVSFLSGKHDHSSYHYGLVLASVFLFAK-TV---ESLTQ-RQWYFGANRIGIRVRSALTV 355
++ ++ + +FAK V + + RQ +R A V
Sbjct: 112 YIEQRDRLYNDNQ-----------VFAKYNVSRLQPYLKLRQALL-------ELRPAKNV 153
Query: 356 LIY------KRSMAIKFAGPSSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVIL 409
LI K +A+ + V+ DF ++ WL
Sbjct: 154 LIDGVLGSGKTWVALDVCL----------SYKVQCKMDFKIF----WL------------ 187
Query: 410 YKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKD--ARIKATSETLKSMRVL 467
NL + + L + D + IK ++++ +
Sbjct: 188 --NLKNCNSPETVL---------EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA-ELR 235
Query: 468 KLLSWEQEFLKKLLRLREI-ERDSLKKYLYTC---------SAIAFLFWASPTLVSVITF 517
+LL + + LL L + + + +C FL A+ T +S+
Sbjct: 236 RLLKSKP-YENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD-- 292
Query: 518 GVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKK 577
LT V S L + L +LP + ++S+ I E I++
Sbjct: 293 ----HHSMTLTPDEVKSLLL--KYLDCRPQDLPREVLTTNPRRLSI--IAESIRDG---- 340
Query: 578 PITEPTSKASDVAIDIEAGEYAWDAREENFKKPTI-KLTDKMKIMKGSKVAVCGSVGSGK 636
T WD N+K KLT ++
Sbjct: 341 LAT-------------------WD----NWKHVNCDKLTTIIE----------------- 360
Query: 637 SSL--LSSILGEIPRISGAAIKVHGKKAYV-----PQSSWIQTGTIRENILFGKDMRQSF 689
SSL L E +K + P S+ I T + ++++ D+ +S
Sbjct: 361 SSLNVLEP--AEY------------RKMFDRLSVFPPSAHIPTILL--SLIWF-DVIKSD 403
Query: 690 YEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV---YSNSDVYIFDD 746
V+ +E + + L + L R++ Y+ + DD
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDD 463
Query: 747 PF-SAVD----AHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSG 801
+D +H G HL ++ +++ FL+ KI
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL--DFRFLEQ----------KIRHDS 511
Query: 802 -----------------KYEDLIADQNSELVRQMKAHRKSLDQVNP 830
Y+ I D + + R + A L ++
Sbjct: 512 TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEE 557
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.1 bits (155), Expect = 3e-10
Identities = 32/217 (14%), Positives = 73/217 (33%), Gaps = 50/217 (23%)
Query: 1126 FLVLIILVTLPRSAIDPSLAG-LAATYGLNLNVLQAWVIWNLCNVENK---MISVERILQ 1181
+ L++ + + L Y + + + E + M++ I Q
Sbjct: 65 LRLFWTLLSKQEEMVQKFVEEVLRINYK--------F-LMSPIKTEQRQPSMMTRMYIEQ 115
Query: 1182 FTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVV 1241
+ ++ + K + + ++L L++ P K + +
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQ----PYLKLRQALLELRP---------------AKNVLID 156
Query: 1242 GRTGSGKSTL-IQAL--FRVVEPSGGRIL------IDGVDISMIGLQDLRSRLSIIPQDP 1292
G GSGK+ + + ++V +I + + + LQ L ++ DP
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI-----DP 211
Query: 1293 MLFQGTVRTNLDPLEQHSDQEIWEVKISKLLTHKSYQ 1329
+ ++ L HS Q ++ +LL K Y+
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQA----ELRRLLKSKPYE 244
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 8e-04
Identities = 55/398 (13%), Positives = 101/398 (25%), Gaps = 143/398 (35%)
Query: 7 LELVSADKVLESVNVAFFIGLFTRLWIEILKRRRDDGYILMARRAAGLVIVLCNVLIFIL 66
L++ + KV +F W+ + + + M ++ L +
Sbjct: 168 LDVCLSYKVQC----KMDFKIF---WLNLKNCNSPETVLEMLQK-------LLYQID--- 210
Query: 67 YMGFGFYEYWNFRIVSFKSVSLVVTWALATVVALCSRYYRTLGEHKRWP---LVL--VLW 121
W R ++ L + R L + K + LVL V
Sbjct: 211 -------PNWTSRSDHSSNIKLRIHSI--------QAELRRLLKSKPYENCLLVLLNV-Q 254
Query: 122 --WVVH--------LVI-----VLVCVSVYLLTHLSSIGLPHILPEAKAVDFVS------ 160
+ L+ V +S TH+S L + +
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314
Query: 161 ---LPLLVLLCFNATYACCCARDPSDLDIPLLREEDDEFLCK-------NISTFASAGVL 210
LP V +P + ++ E + L N +
Sbjct: 315 PQDLPREV-----------LTTNP--RRLSIIAESIRDGLATWDNWKHVNCDKLTTI--- 358
Query: 211 SKITFHWLNQLFQRGRIQKLELL----HIPP---------IPQSETANDASSLLEESL-- 255
+ + + L R +L + HIP + +S+ + L + SL
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418
Query: 256 RKQKTDATSLPQVII------------HAV------------WKSLALNAAFAGVNTIAS 291
++ K S+P + + H L S
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD---QYFYS 475
Query: 292 YIG---------------PFLITNFVSFLSGKHDHSSY 314
+IG + +F FL K H S
Sbjct: 476 HIGHHLKNIEHPERMTLFRMVFLDF-RFLEQKIRHDST 512
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 77.0 bits (189), Expect = 3e-14
Identities = 43/223 (19%), Positives = 88/223 (39%), Gaps = 25/223 (11%)
Query: 609 KPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQS- 667
K + T +++ + + +CG G GKS+L+ +I ++ G + + YV
Sbjct: 448 KILLNKTQ-LRLKRARRYGICGPNGCGKSTLMRAIANG--QVDGFPTQEECRTVYVEHDI 504
Query: 668 -SWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726
++ + + + ++ L EM +S LSGG K
Sbjct: 505 DGTHSDTSVLDFVFESGVGTKEAIKDKLIE--FGFTDEMI-AMPIS-------ALSGGWK 554
Query: 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA- 785
++ LARAV N+D+ + D+P + +D L L T + +H FLD
Sbjct: 555 MKLALARAVLRNADILLLDEPTNHLDTVNVAWL-VNYLNTC--GITSITISHDSVFLDNV 611
Query: 786 ADLVLVMKDGKIEQ-SGKYEDLIADQNSELVRQMKAHRKSLDQ 827
+ ++ + K+ + G + + + + KA+ + +
Sbjct: 612 CEYIINYEGLKLRKYKGNFTEFV-----KKCPAAKAYEELSNT 649
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 51.6 bits (123), Expect = 2e-06
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 16/89 (17%)
Query: 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGT-HLFKQCLMGLLS-----QKTV 773
LSGGQK ++ LA + + + D+P T +L + L L + V
Sbjct: 901 GLSGGQKVKLVLAAGTWQRPHLIVLDEP---------TNYLDRDSLGALSKALKEFEGGV 951
Query: 774 LYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801
+ TH EF + V +KDG++ SG
Sbjct: 952 IIITHSAEFTKNLTEEVWAVKDGRMTPSG 980
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 6e-06
Identities = 18/59 (30%), Positives = 29/59 (49%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1266
+++ N+ QY T + I +I V+G G+GKSTLI L + P+ G +
Sbjct: 672 VKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 74.6 bits (184), Expect = 4e-14
Identities = 61/227 (26%), Positives = 96/227 (42%), Gaps = 67/227 (29%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILG-EIPRISGAAIKVHGKKA-----------YVP 665
+I +G V + G GSGK+++L I G E P + + + GK+ V
Sbjct: 36 FQIREGEMVGLLGPSGSGKTTILRLIAGLERP--TKGDVWIGGKRVTDLPPQKRNVGLVF 93
Query: 666 QS-------SWIQTGTIRENILFGKDMRQSFYEE----VLEGCALNQDIEMWADGDLSVV 714
Q+ T+ +N+ FG ++ +E V E + L
Sbjct: 94 QNYALFQHM------TVYDNVSFGLREKRVPKDEMDARVRELLRFMR---------LESY 138
Query: 715 GERGIN-LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDA-------------HTGTHLF 760
R + LSGGQ+QR+ LARA+ V +FD+PF+A+D H +
Sbjct: 139 ANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGV- 197
Query: 761 KQCLMGLLSQKTVLYTTH-QLEFLDAADLVLVMKDGKIEQSGKYEDL 806
T ++ TH Q E L+ AD VLV+ +G +EQ G E++
Sbjct: 198 -----------TSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEV 233
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 72.2 bits (178), Expect = 7e-14
Identities = 63/245 (25%), Positives = 100/245 (40%), Gaps = 65/245 (26%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSI-------LGEIPRISGAAIKVH-GKKAYVPQSSW 669
++ G +++ GS GSGKS+ L I G I ++G I + K + +
Sbjct: 27 LQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI-IVNGQNINLVRDKDGQLKVADK 85
Query: 670 IQTGTIRENI--LFGKDMRQSF----YEEVLEGCALNQ---------DIEMWADGDLSVV 714
Q +R + +F Q F + VLE D A L+ V
Sbjct: 86 NQLRLLRTRLTMVF-----QHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKV 140
Query: 715 G--ERG-----INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVD--------------A 753
G ER ++LSGGQ+QR+ +ARA+ DV +FD+P SA+D A
Sbjct: 141 GIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLA 200
Query: 754 HTGTHLFKQCLMGLLSQKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDLIADQNS 812
G T++ TH++ F + V+ + GKIE+ G E + + S
Sbjct: 201 EEGK--------------TMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGNPQS 246
Query: 813 ELVRQ 817
++Q
Sbjct: 247 PRLQQ 251
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 1e-07
Identities = 30/104 (28%), Positives = 56/104 (53%), Gaps = 23/104 (22%)
Query: 1207 KIELENLLVQYNPTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGR 1265
K+ + +L +Y VLKG++ G+ I ++G +GSGKST ++ + + +PS G
Sbjct: 6 KLHVIDLHKRYGGH--EVLKGVSLQARAGDV-ISIIGSSGSGKSTFLRCINFLEKPSEGA 62
Query: 1266 ILIDGVDISMIG-------------LQDLRSRLSIIPQDPMLFQ 1296
I+++G +I+++ L+ LR+RL+ M+FQ
Sbjct: 63 IIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLT------MVFQ 100
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 73.4 bits (181), Expect = 1e-13
Identities = 53/206 (25%), Positives = 90/206 (43%), Gaps = 35/206 (16%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILG-EIP-----RISGAAIKVHGKK--------AYVP 665
+ G + + G+ G GK++LL + G E P +SG I Y+
Sbjct: 27 LDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLV 86
Query: 666 QSSWIQTG------TIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719
Q G T+ NI +G + + + M +S + R
Sbjct: 87 QE-----GVLFPHLTVYRNIAYGLGNGKGRTAQERQRIE-----AMLELTGISELAGRYP 136
Query: 720 N-LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--KTVLYT 776
+ LSGGQ+QR LARA+ + ++ + D+PFSA+D + + ++ L K+ ++
Sbjct: 137 HELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIRED-MIAALRANGKSAVFV 195
Query: 777 TH-QLEFLDAADLVLVMKDGKIEQSG 801
+H + E L AD + VMK G+I Q+
Sbjct: 196 SHDREEALQYADRIAVMKQGRILQTA 221
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 4e-13
Identities = 36/204 (17%), Positives = 76/204 (37%), Gaps = 33/204 (16%)
Query: 633 GSGKSSLLSSILGEIP------RISGAAIKVHGKKA-----YVPQSSWIQTG-TIRENIL 680
G+GK++ L I I + G + + Y+P+ + E +
Sbjct: 51 GAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLR 110
Query: 681 F-------GKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733
F + E E L + +R S G +++ +AR
Sbjct: 111 FVAGFYASSSSEIEEMVERATEIAGLGE----KIK-------DRVSTYSKGMVRKLLIAR 159
Query: 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-KTVLYTTHQLEFLDA-ADLVLV 791
A+ N + I D+P S +D ++ L + T+L ++H + ++ D + +
Sbjct: 160 ALMVNPRLAILDEPTSGLDVLN-AREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIAL 218
Query: 792 MKDGKIEQSGKYEDLIADQNSELV 815
+ +G I ++G E+L ++ +
Sbjct: 219 IHNGTIVETGTVEELKERYKAQNI 242
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 6e-07
Identities = 22/100 (22%), Positives = 51/100 (51%), Gaps = 8/100 (8%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCT-FPGEKKI-GVVGRTGSGKSTLIQALFRVVEPSGGR 1265
+ +++L + +LKGI+ GE I G++G G+GK+T ++ + +++PS G
Sbjct: 16 VVVKDLRKRIGKKE--ILKGISFEIEEGE--IFGLIGPNGAGKTTTLRIISTLIKPSSGI 71
Query: 1266 ILIDGVDISMIGLQDLRSRLSIIPQDPMLFQG-TVRTNLD 1304
+ + G ++ ++R +S +P++ ++ L
Sbjct: 72 VTVFGKNVVE-EPHEVRKLISYLPEEAGAYRNMQGIEYLR 110
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 69.5 bits (171), Expect = 2e-12
Identities = 59/214 (27%), Positives = 95/214 (44%), Gaps = 48/214 (22%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILG-EIPRISGAAIKVHGKK-----------AYVPQS 667
+ G + G G+GK+ L I G +P I + GK A+V Q+
Sbjct: 23 VESGEYFVILGPTGAGKTLFLELIAGFHVP--DSGRILLDGKDVTDLSPEKHDIAFVYQN 80
Query: 668 -------SWIQTGTIRENILFGKDMR-QSFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719
+++N+ FG M+ + VL+ + + + +R
Sbjct: 81 YSLFPHM------NVKKNLEFGMRMKKIKDPKRVLDTARDLK---------IEHLLDRNP 125
Query: 720 N-LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQC-LMGLLSQK----TV 773
LSGG++QR+ LARA+ +N + + D+P SA+D T + + L L K TV
Sbjct: 126 LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENA--REMLSVL--HKKNKLTV 181
Query: 774 LYTTH-QLEFLDAADLVLVMKDGKIEQSGKYEDL 806
L+ TH Q E AD + V+ DGK+ Q GK E++
Sbjct: 182 LHITHDQTEARIMADRIAVVMDGKLIQVGKPEEI 215
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 2e-12
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 14/94 (14%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDA----HTGTHLFKQCLMGLLSQK---TV 773
LSG Q+QR+ LARA+ + + + D+PFS +DA + + + + T+
Sbjct: 141 LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKE------VQSRLGVTL 194
Query: 774 LYTTH-QLEFLDAADLVLVMKDGKIEQSGKYEDL 806
L +H + AD V V+ GK+ Q GK EDL
Sbjct: 195 LVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 67.2 bits (165), Expect = 3e-12
Identities = 61/222 (27%), Positives = 92/222 (41%), Gaps = 39/222 (17%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRE 677
+ I +G V V G GSGKS+ L + + I + G + +RE
Sbjct: 45 VHIREGEVVVVIGPSGSGKSTFLRCL-NLLEDFDEGEIIIDGINLKAKDT---NLNKVRE 100
Query: 678 NI--LFGKDMRQSF----YEEVLEGCALNQ---------DIEMWADGDLSVVG--ERG-- 718
+ +F Q F + VL L E A L VG ++
Sbjct: 101 EVGMVF-----QRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHA 155
Query: 719 --INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCL--MGLLSQK--T 772
+LSGGQ QR+ +ARA+ + +FD+P SA+D + + L M L+ + T
Sbjct: 156 YPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDP----EMVGEVLSVMKQLANEGMT 211
Query: 773 VLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDLIADQNSE 813
++ TH++ F + D VL M G I + GK EDL E
Sbjct: 212 MVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRPQHE 253
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 8e-09
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 12/92 (13%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1266
I++ L + VLKGI GE + V+G +GSGKST ++ L + + G I
Sbjct: 25 IDVHQLKKSFGSL--EVLKGINVHIREGEV-VVVIGPSGSGKSTFLRCLNLLEDFDEGEI 81
Query: 1267 LIDGVDIS--MIGLQDLRSRLSIIPQDPMLFQ 1296
+IDG+++ L +R + M+FQ
Sbjct: 82 IIDGINLKAKDTNLNKVREEVG------MVFQ 107
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 66.8 bits (164), Expect = 3e-12
Identities = 42/232 (18%), Positives = 83/232 (35%), Gaps = 47/232 (20%)
Query: 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHGKK------AYVPQSS 668
+ G + + G G+GKS+LL+ + G + +G ++ AY+ Q
Sbjct: 23 VRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQ 82
Query: 669 WIQTG-TIRENILFGKD--MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725
+ + + R +V ++ + LSGG+
Sbjct: 83 TPPFATPVWHYLTLHQHDKTRTELLNDVAGAL----ALDDKLGRSTN-------QLSGGE 131
Query: 726 KQRIQLARA-------VYSNSDVYIFDDPFSAVD-AHTGTHLFKQCLMGLLSQ-----KT 772
QR++LA + + D+P +++D A + L +LS
Sbjct: 132 WQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQ------QSALDKILSALSQQGLA 185
Query: 773 VLYTTHQLEFLDA--ADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHR 822
++ ++H L A ++K GK+ SG+ E+++ N M R
Sbjct: 186 IVMSSHDLN-HTLRHAHRAWLLKGGKMLASGRREEVLTPPNLAQAYGMNFRR 236
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 9e-10
Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 2/78 (2%)
Query: 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRS 1283
L ++ + + +VG G+GKSTL+ + + G I G + L
Sbjct: 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLAL 73
Query: 1284 RLSIIPQDPML-FQGTVR 1300
+ + Q F V
Sbjct: 74 HRAYLSQQQTPPFATPVW 91
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 2e-11
Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 14/89 (15%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDA----HTGTHLFKQCLMGLLSQK---TV 773
LSGGQ+QR+ +ARA+ +V + D+P S +DA L + L ++ T
Sbjct: 134 LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKR------LQKELGITT 187
Query: 774 LYTTH-QLEFLDAADLVLVMKDGKIEQSG 801
+Y TH Q E L AD + V+++G+I Q G
Sbjct: 188 VYVTHDQAEALAMADRIAVIREGEILQVG 216
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 2e-11
Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 14/89 (15%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDA----HTGTHLFKQCLMGLLSQK---TV 773
LSGGQ+QR+ +ARA+ DV + D+P S +DA + K L QK T
Sbjct: 142 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKK------LQQKLKVTT 195
Query: 774 LYTTH-QLEFLDAADLVLVMKDGKIEQSG 801
+Y TH Q+E + D + VM G++ Q G
Sbjct: 196 IYVTHDQVEAMTMGDRIAVMNRGQLLQIG 224
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 2e-11
Identities = 36/150 (24%), Positives = 68/150 (45%), Gaps = 18/150 (12%)
Query: 1187 SEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMV--LKGITCTFPGEKKIGVVGRT 1244
+S + I+L N+ ++ + L ++ P + GV+G +
Sbjct: 4 HHHHHHHHHSSGHIDDDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGAS 63
Query: 1245 GSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRS-RLSIIPQDPMLFQG------ 1297
G+GKSTLI+ + + P+ G +L+DG +++ + +L R I M+FQ
Sbjct: 64 GAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQI----GMIFQHFNLLSS 119
Query: 1298 -TVRTNLD-PLE--QHSDQEIWEVKISKLL 1323
TV N+ PLE E+ + ++++LL
Sbjct: 120 RTVFGNVALPLELDNTPKDEV-KRRVTELL 148
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 3e-10
Identities = 33/106 (31%), Positives = 56/106 (52%), Gaps = 12/106 (11%)
Query: 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCL------MGLLSQKTV 773
NLSGGQKQR+ +ARA+ SN V + D SA+D T T + L +GL T+
Sbjct: 163 NLSGGQKQRVAIARALASNPKVLLCDQATSALDPAT-TRSILELLKDINRRLGL----TI 217
Query: 774 LYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQM 818
L TH+++ + D V V+ +G++ + ++ + + L ++
Sbjct: 218 LLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKF 263
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 65.3 bits (160), Expect = 4e-11
Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 14/94 (14%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDA----HTGTHLFKQCLMGLLSQK---TV 773
LSGGQ+QR+ LARA+ V +FD+P S +DA + L Q+ T
Sbjct: 134 LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKH------LQQELGITS 187
Query: 774 LYTTH-QLEFLDAADLVLVMKDGKIEQSGKYEDL 806
+Y TH Q E + A + V GK+ Q G +++
Sbjct: 188 VYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEV 221
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 7e-11
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 14/90 (15%)
Query: 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDA----HTGTHLFKQCLMGLLSQK---T 772
LSGGQ+QR+ L RA+ V++ D+P S +DA L K L ++ T
Sbjct: 139 ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKK------LQRQLGVT 192
Query: 773 VLYTTH-QLEFLDAADLVLVMKDGKIEQSG 801
+Y TH Q+E + D + VM G ++Q G
Sbjct: 193 TIYVTHDQVEAMTMGDRIAVMNRGVLQQVG 222
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 62.1 bits (152), Expect = 1e-10
Identities = 48/206 (23%), Positives = 92/206 (44%), Gaps = 35/206 (16%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIR- 676
+ + KG V++ G+ GSGKS+LL ILG + + + + GK+ V ++ + +R
Sbjct: 25 LSVKKGEFVSIIGASGSGKSTLLY-ILGLLDAPTEGKVFLEGKE--VDYTNEKELSLLRN 81
Query: 677 ENILFGKDMRQSFY----EEVLEGCAL--------NQDIEMWADGDLSVVG--ERGIN-- 720
+ F + Q Y LE + ++ + + LS +G ++
Sbjct: 82 RKLGF---VFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKP 138
Query: 721 --LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-----KTV 773
LSGG++QR+ +ARA+ + + D+P +D+ +M + + ++
Sbjct: 139 YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKR-----VMDIFLKINEGGTSI 193
Query: 774 LYTTHQLEFLDAADLVLVMKDGKIEQ 799
+ TH+ E + L MKDGK+
Sbjct: 194 VMVTHERELAELTHRTLEMKDGKVVG 219
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 4e-05
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCT-FPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1266
+ EN+ +LKGI+ + GE + ++G +GSGKSTL+ L + P+ G++
Sbjct: 5 LRAENIKKVIR-GYE-ILKGISLSVKKGEF-VSIIGASGSGKSTLLYILGLLDAPTEGKV 61
Query: 1267 LIDGVDISMIG---LQDLRSR 1284
++G ++ L LR+R
Sbjct: 62 FLEGKEVDYTNEKELSLLRNR 82
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 1e-09
Identities = 55/211 (26%), Positives = 94/211 (44%), Gaps = 42/211 (19%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIR- 676
+ I +G V++ G GSGKS++L+ I+G + + + + + K + IR
Sbjct: 26 LNIKEGEFVSIMGPSGSGKSTMLN-IIGCLDKPTEGEVYIDNIK--TNDLDDDELTKIRR 82
Query: 677 ENILFGKDMRQSF--------YEEV--------LEGCALNQDIEMWADGDLSVVG--ERG 718
+ I F + Q F E V + + + A L + ER
Sbjct: 83 DKIGF---VFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKR-ALECLKMAELEERF 138
Query: 719 IN-----LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--- 770
N LSGGQ+QR+ +ARA+ +N + + D P A+D+ TG +M LL +
Sbjct: 139 ANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEK-----IMQLLKKLNE 193
Query: 771 ---KTVLYTTHQLEFLDAADLVLVMKDGKIE 798
KTV+ TH + + ++ +KDG++E
Sbjct: 194 EDGKTVVVVTHDINVARFGERIIYLKDGEVE 224
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 6e-04
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 13/86 (15%)
Query: 1208 IELENLLVQYN--PTLPMVLKGITCTF-PGEKKIGVVGRTGSGKSTL---IQALFRVVEP 1261
++L+N+ Y + LK + GE + ++G +GSGKST+ I L + P
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEF-VSIMGPSGSGKSTMLNIIGCLDK---P 57
Query: 1262 SGGRILIDGVDISMIG---LQDLRSR 1284
+ G + ID + + + L +R
Sbjct: 58 TEGEVYIDNIKTNDLDDDELTKIRRD 83
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 56.7 bits (138), Expect = 9e-09
Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Query: 1209 ELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILI 1268
E+++L V Y +KGI P + + ++G G+GK+T + A+ +V G+I+
Sbjct: 8 EVQSLHVYYGAIH--AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIF 65
Query: 1269 DGVDISMIGLQDL-RSRLSIIPQDPMLFQG-TVRTNL 1303
+G DI+ + R ++++P+ +F TV NL
Sbjct: 66 NGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENL 102
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 57.9 bits (141), Expect = 1e-08
Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 14/90 (15%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDA----HTGTHLFKQCLMGLLSQK---TV 773
LSGGQ+QR+ + R + + V++ D+P S +DA + + L ++ T+
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISR------LHKRLGRTM 187
Query: 774 LYTTH-QLEFLDAADLVLVMKDGKIEQSGK 802
+Y TH Q+E + AD ++V+ G++ Q GK
Sbjct: 188 IYVTHDQVEAMTLADKIVVLDAGRVAQVGK 217
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 51.2 bits (122), Expect = 1e-06
Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 9/83 (10%)
Query: 721 LSGGQKQRIQLA------RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-KTV 773
LSGG++ + LA + + I D+P +D L + L + V
Sbjct: 249 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT-IMERYLKKIPQV 307
Query: 774 LYTTHQLEFLDAAD-LVLVMKDG 795
+ +H E DAAD ++ + +
Sbjct: 308 ILVSHDEELKDAADHVIRISLEN 330
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 9e-05
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 8/77 (10%)
Query: 721 LSGGQKQRIQLA------RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-KTV 773
LSGG++ + LA + + I D+P +D L + L + V
Sbjct: 58 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT-IMERYLKKIPQV 116
Query: 774 LYTTHQLEFLDAADLVL 790
+ +H E DAAD V+
Sbjct: 117 ILVSHDEELKDAADHVI 133
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 1333 | ||||
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 5e-56 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 4e-21 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 3e-49 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-29 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 2e-48 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 5e-25 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 4e-45 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 1e-21 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 6e-44 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 7e-26 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 5e-42 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 4e-26 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 2e-27 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 2e-13 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 4e-26 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 6e-10 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 9e-26 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 9e-12 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 1e-25 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 1e-13 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 1e-24 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 7e-15 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 3e-24 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 3e-07 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 8e-24 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 7e-11 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 1e-23 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 2e-09 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 4e-23 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 9e-11 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 6e-23 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 3e-13 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 2e-21 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 9e-10 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 2e-20 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 2e-09 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 2e-20 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 3e-10 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 1e-19 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-13 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 2e-14 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 9e-10 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 2e-07 | |
| d3b60a2 | 319 | f.37.1.1 (A:10-328) Multidrug resistance ABC trans | 3e-07 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-06 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-06 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 3e-05 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 0.004 |
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 193 bits (493), Expect = 5e-56
Identities = 90/281 (32%), Positives = 145/281 (51%), Gaps = 17/281 (6%)
Query: 559 TKVSLYRIQEF----IKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKL 614
T + + + F E +K + K S ++ P +K
Sbjct: 1 TGIIMENVTAFWEEGFGELLEKVQQSNGDRKHSSDENNVSFSHLCLVGN------PVLKN 54
Query: 615 TDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGT 674
+ + I KG +A+ GS GSGK+SLL ILGE+ G IK G+ ++ Q SWI GT
Sbjct: 55 IN-LNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGI-IKHSGRVSFCSQFSWIMPGT 112
Query: 675 IRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734
I+ENI+FG + Y+ V++ C L QDI +A+ D +V+GE G+ LSGGQ+ RI LARA
Sbjct: 113 IKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARA 172
Query: 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKD 794
VY ++D+Y+ D PF +D T +F+ C+ L++ KT + T ++E L AD +L++
Sbjct: 173 VYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQ 232
Query: 795 GKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDK 835
G G + +L + + ++ + D + E++
Sbjct: 233 GSSYFYGTFSELQS-LRPDFSSKLMGY----DTFDQFTEER 268
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 93.1 bits (231), Expect = 4e-21
Identities = 30/149 (20%), Positives = 54/149 (36%), Gaps = 22/149 (14%)
Query: 1169 VENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGI 1228
+EN E F + + +++ + +L + NP VLK I
Sbjct: 5 MENVTAFWEEG--FGELLEKVQ---QSNGDRKHSSDENNVSFSHLCLVGNP----VLKNI 55
Query: 1229 TCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSII 1288
+ + + G TGSGK++L+ + +E S G I G R+S
Sbjct: 56 NLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RVSFC 102
Query: 1289 PQDPMLFQGTVRTNLDPLEQHSDQEIWEV 1317
Q + GT++ N+ + + V
Sbjct: 103 SQFSWIMPGTIKENIIFGVSYDEYRYKSV 131
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 173 bits (440), Expect = 3e-49
Identities = 73/263 (27%), Positives = 119/263 (45%), Gaps = 28/263 (10%)
Query: 570 IKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVC 629
IK +PI + IDI+ + ++ E P +K + + I KG VA
Sbjct: 1 IKNGVGAQPIEIKQGR-----IDIDHVSFQYNDNE----APILKDIN-LSIEKGETVAFV 50
Query: 630 GSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-------------AYVPQSSWIQTGTIR 676
G G GKS+L++ I SG I + G V Q + + + T++
Sbjct: 51 GMSGGGKSTLINLIPRFYDVTSGQ-ILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVK 109
Query: 677 ENILFG-KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735
ENIL G E + + I G + VGERG+ LSGGQKQR+ +AR
Sbjct: 110 ENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIF 169
Query: 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDG 795
+N + I D+ SA+D + + + ++ L L +T L H+L + AD ++V+++G
Sbjct: 170 LNNPPILILDEATSALDLESESII-QEALDVLSKDRTTLIVAHRLSTITHADKIVVIENG 228
Query: 796 KIEQSGKYEDLIADQNSELVRQM 818
I ++G + +LIA +
Sbjct: 229 HIVETGTHRELIA--KQGAYEHL 249
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 116 bits (291), Expect = 2e-29
Identities = 38/119 (31%), Positives = 65/119 (54%), Gaps = 1/119 (0%)
Query: 1200 PEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVV 1259
P G+I+++++ QYN +LK I + + + VG +G GKSTLI + R
Sbjct: 9 PIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY 68
Query: 1260 EPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNL-DPLEQHSDQEIWEV 1317
+ + G+ILIDG +I LR+++ ++ QD +LF TV+ N+ +D+E+ E
Sbjct: 69 DVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEA 127
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 170 bits (433), Expect = 2e-48
Identities = 67/260 (25%), Positives = 119/260 (45%), Gaps = 27/260 (10%)
Query: 573 DNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSV 632
D K+ I T ++ + + RE P ++ + +KI G VA+ G
Sbjct: 1 DEGKRVIDRATGD-----LEFRNVTFTYPGRE----VPALRNIN-LKIPAGKTVALVGRS 50
Query: 633 GSGKSSLLSSILGEIP------RISGAAIK------VHGKKAYVPQSSWIQTGTIRENIL 680
GSGKS++ S I + G ++ + + A V Q+ + T+ NI
Sbjct: 51 GSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIA 110
Query: 681 FG--KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSN 738
+ ++ + EE I +G +++GE G+ LSGGQ+QRI +ARA+ +
Sbjct: 111 YARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRD 170
Query: 739 SDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIE 798
S + I D+ SA+D + + L L +T L H+L ++ AD ++V++DG I
Sbjct: 171 SPILILDEATSALDTESERAIQ-AALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIV 229
Query: 799 QSGKYEDLIADQNSELVRQM 818
+ G + +L+A + Q+
Sbjct: 230 ERGTHSELLA--QHGVYAQL 247
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 103 bits (259), Expect = 5e-25
Identities = 37/122 (30%), Positives = 64/122 (52%), Gaps = 3/122 (2%)
Query: 1205 SGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGG 1264
+G +E N+ Y L+ I P K + +VGR+GSGKST+ + R + G
Sbjct: 11 TGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEG 70
Query: 1265 RILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTN--LDPLEQHSDQEIWEV-KISK 1321
IL+DG D+ L LR++++++ Q+ LF TV N E++S ++I E +++
Sbjct: 71 HILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAY 130
Query: 1322 LL 1323
+
Sbjct: 131 AM 132
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 161 bits (408), Expect = 4e-45
Identities = 60/216 (27%), Positives = 104/216 (48%), Gaps = 19/216 (8%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-------------AYV 664
+ S +A G G GKS++ S + +G I + G+ +V
Sbjct: 23 FEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGE-ITIDGQPIDNISLENWRSQIGFV 81
Query: 665 PQSSWIQTGTIRENILFG--KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722
Q S I GTIREN+ +G D +VL+ +E D + VGERG+ +S
Sbjct: 82 SQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKIS 141
Query: 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEF 782
GGQ+QR+ +ARA N + + D+ +++D+ + + + ++ L L+ +T L H+L
Sbjct: 142 GGQRQRLAIARAFLRNPKILMLDEATASLDSESESMV-QKALDSLMKGRTTLVIAHRLST 200
Query: 783 LDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQM 818
+ AD + ++ G+I SGK+ +L+A L +
Sbjct: 201 IVDADKIYFIEKGQITGSGKHNELVA--THPLYAKY 234
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 93.4 bits (232), Expect = 1e-21
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
+ ++ Y+ + +L+ I+ I G +G GKST+ L R +P+ G I
Sbjct: 2 LSARHVDFAYDDSEQ-ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLD 1304
IDG I I L++ RS++ + QD + GT+R NL
Sbjct: 61 IDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLT 97
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 158 bits (400), Expect = 6e-44
Identities = 56/218 (25%), Positives = 93/218 (42%), Gaps = 21/218 (9%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-------------AYV 664
+ G A+ G GSGKS++ + + +G + + GK A V
Sbjct: 35 FTLRPGEVTALVGPNGSGKSTVAALLQNLYQ-PTGGQLLLDGKPLPQYEHRYLHRQVAAV 93
Query: 665 PQSSWIQTGTIRENILFGKDMRQSFYE--EVLEGCALNQDIEMWADGDLSVVGERGINLS 722
Q + +++ENI +G + + E + I G + V E G LS
Sbjct: 94 GQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLS 153
Query: 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--KTVLYTTHQL 780
GGQ+Q + LARA+ V I DD SA+DA++ + Q L + ++VL T L
Sbjct: 154 GGQRQAVALARALIRKPCVLILDDATSALDANSQLQVE-QLLYESPERYSRSVLLITQHL 212
Query: 781 EFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQM 818
++ AD +L ++ G I + G ++ L+ M
Sbjct: 213 SLVEQADHILFLEGGAIREGGTHQQLME--KKGCYWAM 248
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 105 bits (264), Expect = 7e-26
Identities = 30/121 (24%), Positives = 64/121 (52%), Gaps = 3/121 (2%)
Query: 1202 WPSSGKIELENLLVQY-NPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE 1260
G ++ +++ Y N +VL+G+T T + +VG GSGKST+ L + +
Sbjct: 6 LHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ 65
Query: 1261 PSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNL--DPLEQHSDQEIWEVK 1318
P+GG++L+DG + + L +++ + Q+P +F +++ N+ ++ + +EI
Sbjct: 66 PTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAA 125
Query: 1319 I 1319
+
Sbjct: 126 V 126
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 151 bits (384), Expect = 5e-42
Identities = 56/210 (26%), Positives = 99/210 (47%), Gaps = 16/210 (7%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-------------AYV 664
+ I +G + + G GSGKS+L I + + G V
Sbjct: 24 LSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI-PENGQVLIDGHDLALADPNWLRRQVGVV 82
Query: 665 PQSSWIQTGTIRENILFG-KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723
Q + + +I +NI M + + I +G ++VGE+G LSG
Sbjct: 83 LQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSG 142
Query: 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFL 783
GQ+QRI +ARA+ +N + IFD+ SA+D + + + + + +TV+ H+L +
Sbjct: 143 GQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM-RNMHKICKGRTVIIIAHRLSTV 201
Query: 784 DAADLVLVMKDGKIEQSGKYEDLIADQNSE 813
AD ++VM+ GKI + GK+++L+++ S
Sbjct: 202 KNADRIIVMEKGKIVEQGKHKELLSEPESL 231
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 106 bits (265), Expect = 4e-26
Identities = 34/110 (30%), Positives = 60/110 (54%), Gaps = 1/110 (0%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
I N+ +Y P P++L I + + IG+VGR+GSGKSTL + + R P G++L
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNL-DPLEQHSDQEIWE 1316
IDG D+++ LR ++ ++ QD +L ++ N+ S +++
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIY 111
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 110 bits (276), Expect = 2e-27
Identities = 52/221 (23%), Positives = 84/221 (38%), Gaps = 33/221 (14%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-----------AYVPQ 666
+ I G + + G G GK++ L I G G I + + V Q
Sbjct: 27 LTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR-IYFGDRDVTYLPPKDRNISMVFQ 85
Query: 667 SSWIQTG-TIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVG------ERGI 719
S + T+ ENI F +++ +E I+ ++
Sbjct: 86 SYAVWPHMTVYENIAFPLKIKKFPKDE----------IDKRVRWAAELLQIEELLNRYPA 135
Query: 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--KTVLYTT 777
LSGGQ+QR+ +ARA+ DV + D+P S +DA + + L + T +Y T
Sbjct: 136 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMR-AEIKKLQQKLKVTTIYVT 194
Query: 778 HQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
H D + VM G++ Q G ++ NS V
Sbjct: 195 HDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVAT 235
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 69.4 bits (170), Expect = 2e-13
Identities = 22/98 (22%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Query: 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1266
+++LENL ++ + + T + + ++G +G GK+T ++ + + EP+ GRI
Sbjct: 6 EVKLENLTKRFGNF--TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 63
Query: 1267 LIDGVDISMIGLQDLRSRLSIIPQDPMLFQG-TVRTNL 1303
D++ L +S++ Q ++ TV N+
Sbjct: 64 YFGDRDVTY--LPPKDRNISMVFQSYAVWPHMTVYENI 99
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 106 bits (265), Expect = 4e-26
Identities = 44/215 (20%), Positives = 81/215 (37%), Gaps = 15/215 (6%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIP------RISGAAIKVHGKKAYVPQSSWIQ 671
+++ G + + G G GK++ L I G I + K +VP
Sbjct: 24 LEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDI 83
Query: 672 TGTIRENILFGKDMRQSFYEEVLEGCALN-QDIEMWADGDLSVVGERGI------NLSGG 724
+ L+ L+ + Q+I+ ++G + LSGG
Sbjct: 84 AMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGG 143
Query: 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCL-MGLLSQKTVLYTTHQLEF- 782
Q+QR+ L RA+ V++ D+P S +DA + + + T +Y TH
Sbjct: 144 QRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEA 203
Query: 783 LDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
+ D + VM G ++Q G +++ + V
Sbjct: 204 MTMGDRIAVMNRGVLQQVGSPDEVYDKPANTFVAG 238
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 58.8 bits (142), Expect = 6e-10
Identities = 19/116 (16%), Positives = 48/116 (41%), Gaps = 7/116 (6%)
Query: 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1266
+ L ++ + ++ ++ + + ++G +G GK+T ++ + + EPS G+I
Sbjct: 3 GVRLVDVWKVFGEVT--AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
Query: 1267 LIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVKISKL 1322
I ++ + + P+D + L P D + +K+ K+
Sbjct: 61 YIGDKLVAD-----PEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKV 111
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 105 bits (264), Expect = 9e-26
Identities = 48/228 (21%), Positives = 92/228 (40%), Gaps = 29/228 (12%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKA--------------Y 663
+ + KG + G GSGKS+L++ I G + G + K
Sbjct: 25 ISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGR-VYFENKDITNKEPAELYHYGIVR 83
Query: 664 VPQS-SWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI--- 719
Q+ ++ T+ EN+L G+ L E + ++ +
Sbjct: 84 TFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHL 143
Query: 720 ------NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-KT 772
LSGGQ + +++ RA+ +N + + D+P + V H ++ L ++ T
Sbjct: 144 YDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGL-AHDIFNHVLELKAKGIT 202
Query: 773 VLYTTHQLEF-LDAADLVLVMKDGKIEQSGKYEDLIAD-QNSELVRQM 818
L H+L+ L+ D + VM +G+I G+ E+ I + + V ++
Sbjct: 203 FLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKNVLSDPKVVEI 250
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 64.6 bits (157), Expect = 9e-12
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 4/98 (4%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
+ EN++ + L G++ + ++G GSGKSTLI + ++ GR+
Sbjct: 5 LRTENIVKYFGEF--KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVY 62
Query: 1268 IDGVDISMIGLQDL-RSRLSIIPQDPMLFQG-TVRTNL 1303
+ DI+ +L + Q P + TV NL
Sbjct: 63 FENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENL 100
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 104 bits (261), Expect = 1e-25
Identities = 49/205 (23%), Positives = 89/205 (43%), Gaps = 22/205 (10%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK---------------- 661
+ I +G V++ G GSGKS++L+ I + + + + + K
Sbjct: 26 LNIKEGEFVSIMGPSGSGKSTMLNIIGC-LDKPTEGEVYIDNIKTNDLDDDELTKIRRDK 84
Query: 662 -AYVPQSSW-IQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719
+V Q I T EN+ + E + A+ + +
Sbjct: 85 IGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPN 144
Query: 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--KTVLYTT 777
LSGGQ+QR+ +ARA+ +N + + D P A+D+ TG + + L L + KTV+ T
Sbjct: 145 QLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQL-LKKLNEEDGKTVVVVT 203
Query: 778 HQLEFLDAADLVLVMKDGKIEQSGK 802
H + + ++ +KDG++E+ K
Sbjct: 204 HDINVARFGERIIYLKDGEVEREEK 228
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 69.9 bits (171), Expect = 1e-13
Identities = 23/103 (22%), Positives = 48/103 (46%), Gaps = 7/103 (6%)
Query: 1208 IELENLLVQY--NPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGR 1265
I+L+N+ Y + LK + + + ++G +GSGKST++ + + +P+ G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 1266 ILIDGVDISMIGLQDL----RSRLSIIPQDPMLFQG-TVRTNL 1303
+ ID + + + +L R ++ + Q L T N+
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENV 104
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 102 bits (256), Expect = 1e-24
Identities = 63/236 (26%), Positives = 101/236 (42%), Gaps = 28/236 (11%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------KAYVPQSSW 669
++ G +++ GS GSGKS+ L I GA I V+G+ + +
Sbjct: 23 LQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGA-IIVNGQNINLVRDKDGQLKVADK 81
Query: 670 IQTGTIRENI-----LFGKDMRQSFYEEVLEGCALNQ-----DIEMWADGDLSVVG--ER 717
Q +R + F + E V+E D A L+ VG ER
Sbjct: 82 NQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDER 141
Query: 718 GIN-----LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKT 772
LSGGQ+QR+ +ARA+ DV +FD+P SA+D + + KT
Sbjct: 142 AQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKT 201
Query: 773 VLYTTHQLEF-LDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ-MKAHRKSLD 826
++ TH++ F + V+ + GKIE+ G E + + S ++Q +K K L+
Sbjct: 202 MVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGNPQSPRLQQFLKGSLKKLE 257
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 73.7 bits (181), Expect = 7e-15
Identities = 28/102 (27%), Positives = 55/102 (53%), Gaps = 15/102 (14%)
Query: 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1266
K+ + +L +Y VLKG++ I ++G +GSGKST ++ + + +PS G I
Sbjct: 2 KLHVIDLHKRYGGH--EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 59
Query: 1267 LIDGVDISMIGLQD-------------LRSRLSIIPQDPMLF 1295
+++G +I+++ +D LR+RL+++ Q L+
Sbjct: 60 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLW 101
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 100 bits (251), Expect = 3e-24
Identities = 44/205 (21%), Positives = 81/205 (39%), Gaps = 13/205 (6%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRE 677
+K+ +G V + G+ G+GK++ LS+I G + G I P + G
Sbjct: 27 LKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALV 86
Query: 678 NILFGKDMRQSFYEEVLEGCALNQDIE------MWADGDLSVVGER----GINLSGGQKQ 727
+ YE ++ G +D E W + ER G LSGG++Q
Sbjct: 87 PEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQ 146
Query: 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-KTVLYTTHQLEF-LDA 785
+ + RA+ S + + D+P + + + + + T+L L
Sbjct: 147 MLAIGRALMSRPKLLMMDEPSLGLAPIL-VSEVFEVIQKINQEGTTILLVEQNALGALKV 205
Query: 786 ADLVLVMKDGKIEQSGKYEDLIADQ 810
A V++ G+I GK +L+ ++
Sbjct: 206 AHYGYVLETGQIVLEGKASELLDNE 230
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 50.7 bits (121), Expect = 3e-07
Identities = 28/119 (23%), Positives = 58/119 (48%), Gaps = 5/119 (4%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
+E+++L V Y +KGI P + + ++G G+GK+T + A+ +V G+I+
Sbjct: 7 LEVQSLHVYYGAIH--AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKII 64
Query: 1268 IDGVDISMIGLQDLRSR-LSIIPQDPMLF-QGTVRTNL-DPLEQHSDQEIWEVKISKLL 1323
+G DI+ + ++++P+ +F + TV NL D+E + + +
Sbjct: 65 FNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIF 123
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 99.6 bits (248), Expect = 8e-24
Identities = 47/212 (22%), Positives = 83/212 (39%), Gaps = 15/212 (7%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRE 677
+ I +G V G G GKS+LL I G I+ + + K+ + G + +
Sbjct: 21 LDIHEGEFVVFVGPSGCGKSTLLRMIAGLET-ITSGDLFIGEKRMNDTPPAERGVGMVFQ 79
Query: 678 NILFGKDMRQSFYEEVLEGCALN----QDIEMWADGDLSVVGERGI------NLSGGQKQ 727
+ + E + G L + I + V+ + LSGGQ+Q
Sbjct: 80 SYALYPHLS--VAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQ 137
Query: 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK-TVLYTTHQLEFLDA- 785
R+ + R + + V++ D+P S +DA + + T++Y TH
Sbjct: 138 RVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTL 197
Query: 786 ADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
AD ++V+ G++ Q GK +L V
Sbjct: 198 ADKIVVLDAGRVAQVGKPLELYHYPADRFVAG 229
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 61.5 bits (149), Expect = 7e-11
Identities = 17/88 (19%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
++L+N+ + + V K I + + VG +G GKSTL++ + + + G +
Sbjct: 1 VQLQNVTKAWGEVV--VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 58
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLF 1295
I ++ + ++ Q L+
Sbjct: 59 IGEKRMN--DTPPAERGVGMVFQSYALY 84
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 99.0 bits (246), Expect = 1e-23
Identities = 57/214 (26%), Positives = 96/214 (44%), Gaps = 22/214 (10%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-----------AYVPQ 666
+K+ G + G G+GK+ L I G I + GK A+V Q
Sbjct: 21 LKVESGEYFVILGPTGAGKTLFLELIAGFHV-PDSGRILLDGKDVTDLSPEKHDIAFVYQ 79
Query: 667 S-SWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725
+ S +++N+ FG M++ + + A + IE D + LSGG+
Sbjct: 80 NYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLD-------RNPLTLSGGE 132
Query: 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK-QCLMGLLSQKTVLYTTHQLEFLD 784
+QR+ LARA+ +N + + D+P SA+D T + + ++ ++ TVL+ TH
Sbjct: 133 QQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEAR 192
Query: 785 A-ADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
AD + V+ DGK+ Q GK E++ V
Sbjct: 193 IMADRIAVVMDGKLIQVGKPEEIFEKPVEGRVAS 226
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 57.0 bits (137), Expect = 2e-09
Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
IE+E+L ++ L ++ + ++G TG+GK+ ++ + P GRIL
Sbjct: 2 IEIESLSRKWKNF---SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL 58
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLF 1295
+DG D++ L + ++ + Q+ LF
Sbjct: 59 LDGKDVT--DLSPEKHDIAFVYQNYSLF 84
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 97.8 bits (243), Expect = 4e-23
Identities = 41/209 (19%), Positives = 83/209 (39%), Gaps = 9/209 (4%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRE 677
+I +G + G G+GK++ L I I SG P + E
Sbjct: 23 FEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPE 82
Query: 678 NILFGKDMRQSFYEEVLEGCAL--NQDIEMWADGDLSVVG------ERGINLSGGQKQRI 729
++M+ Y + G + +IE + + G +R S G +++
Sbjct: 83 EAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKL 142
Query: 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADL 788
+ARA+ N + I D+P S +D + K T+L ++H + ++ D
Sbjct: 143 LIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDR 202
Query: 789 VLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
+ ++ +G I ++G E+L ++ + +
Sbjct: 203 IALIHNGTIVETGTVEELKERYKAQNIEE 231
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 61.2 bits (148), Expect = 9e-11
Identities = 19/91 (20%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGR 1265
G + +++L + +LKGI+ + G++G G+GK+T ++ + +++PS G
Sbjct: 1 GAVVVKDLRKRIGKKE--ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGI 58
Query: 1266 ILIDGVDISMIGLQDLRSRLSIIPQDPMLFQ 1296
+ + G ++ + ++R +S +P++ ++
Sbjct: 59 VTVFGKNV-VEEPHEVRKLISYLPEEAGAYR 88
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 97.3 bits (242), Expect = 6e-23
Identities = 50/226 (22%), Positives = 94/226 (41%), Gaps = 38/226 (16%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK---------------- 661
+ + G V G+ G+GKS+L+ + G+ + V G++
Sbjct: 26 LHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS-VLVDGQELTTLSESELTKARRQI 84
Query: 662 AYVPQS-SWIQTGTIRENILFG-------KDMRQSFYEEVLEGCALNQDIEMWADGDLSV 713
+ Q + + + T+ N+ KD + E+L L + +
Sbjct: 85 GMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPS----- 139
Query: 714 VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVD-AHTGTHLFKQCLMGLLSQKT 772
NLSGGQKQR+ +ARA+ SN V + D+ SA+D A T + L + T
Sbjct: 140 ------NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLT 193
Query: 773 VLYTTHQLEF-LDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
+L TH+++ D V V+ +G++ + ++ + + L ++
Sbjct: 194 ILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQK 239
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 68.8 bits (168), Expect = 3e-13
Identities = 33/125 (26%), Positives = 62/125 (49%), Gaps = 10/125 (8%)
Query: 1208 IELENLLVQY--NPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGR 1265
I+L N+ + L ++ P + GV+G +G+GKSTLI+ + + P+ G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 1266 ILIDGVDISMIGLQD---LRSRLSIIPQDPMLF-QGTVRTNLD-PLEQH--SDQEIWEVK 1318
+L+DG +++ + + R ++ +I Q L TV N+ PLE E+ +
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKR-R 120
Query: 1319 ISKLL 1323
+++LL
Sbjct: 121 VTELL 125
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 92.3 bits (229), Expect = 2e-21
Identities = 41/209 (19%), Positives = 83/209 (39%), Gaps = 19/209 (9%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRE 677
++ G + + G G+GKS+LL+ + G +I+ G+ ++ +
Sbjct: 20 GEVRAGEILHLVGPNGAGKSTLLARMAGMTS--GKGSIQFAGQPLEAWSATKLALHRAYL 77
Query: 678 NILFGKDMRQSFYEEVLEGCALNQDIEMWAD-----GDLSVVGERGINLSGGQKQRIQLA 732
+ + + E+ D +G LSGG+ QR++LA
Sbjct: 78 SQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLA 137
Query: 733 RAVYS-------NSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--KTVLYTTHQLEF- 782
V + + D+P +++D + L K ++ L Q ++ ++H L
Sbjct: 138 AVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDK--ILSALCQQGLAIVMSSHDLNHT 195
Query: 783 LDAADLVLVMKDGKIEQSGKYEDLIADQN 811
L A ++K GK+ SG+ E+++ N
Sbjct: 196 LRHAHRAWLLKGGKMLASGRREEVLTPPN 224
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 58.0 bits (140), Expect = 9e-10
Identities = 19/111 (17%), Positives = 38/111 (34%), Gaps = 9/111 (8%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
++L+++ L ++ + + +VG G+GKSTL+ + + G I
Sbjct: 4 MQLQDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGSIQ 56
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDP-MLFQGTVRTNL-DPLEQHSDQEIWE 1316
G + L + + Q F V L + E+
Sbjct: 57 FAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLN 107
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 89.7 bits (222), Expect = 2e-20
Identities = 47/201 (23%), Positives = 80/201 (39%), Gaps = 9/201 (4%)
Query: 621 MKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENIL 680
M + G G+GKS L I G + G ++++G G + ++
Sbjct: 22 MGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGE-VRLNGADITPLPPERRGIGFVPQDYA 80
Query: 681 FGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVG------ERGINLSGGQKQRIQLARA 734
+ + + +G + LSGG++QR+ LARA
Sbjct: 81 LFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARA 140
Query: 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK-TVLYTTHQLEF-LDAADLVLVM 792
+ + + D+P SAVD T L ++ +L+ TH L AD V VM
Sbjct: 141 LVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVM 200
Query: 793 KDGKIEQSGKYEDLIADQNSE 813
+G+I + GK ++L + +N E
Sbjct: 201 LNGRIVEKGKLKELFSAKNGE 221
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 56.9 bits (137), Expect = 2e-09
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 1238 IGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLF 1295
++G TG+GKS ++ + +V+P G + ++G DI+ L R + +PQD LF
Sbjct: 27 CVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITP--LPPERRGIGFVPQDYALF 82
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 89.8 bits (222), Expect = 2e-20
Identities = 47/214 (21%), Positives = 81/214 (37%), Gaps = 14/214 (6%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIP------RISGAAIKVHGKKAYVPQSSWIQ 671
+ I G + + G G+GK++ + I G + +GK P+ I
Sbjct: 26 INIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIG 85
Query: 672 TGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI------NLSGGQ 725
+ ++ + ++I + ++ + LSG Q
Sbjct: 86 MVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQ 145
Query: 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK-TVLYTTHQLEFLD 784
+QR+ LARA+ + + + D+PFS +DA T+L +H +
Sbjct: 146 QQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIF 205
Query: 785 A-ADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
A AD V V+ GK+ Q GK EDL + S V
Sbjct: 206 AIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVAS 239
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 59.7 bits (144), Expect = 3e-10
Identities = 16/92 (17%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1266
+I ++N+ + + L + ++ G++G +G+GK+T ++ + + PS G +
Sbjct: 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
Query: 1267 LIDGVDISMIGLQDLRSR---LSIIPQDPMLF 1295
D ++ G + + ++ Q L+
Sbjct: 63 YFDDRLVASNGKLIVPPEDRKIGMVFQTWALY 94
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 86.1 bits (213), Expect = 1e-19
Identities = 35/182 (19%), Positives = 80/182 (43%), Gaps = 20/182 (10%)
Query: 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK--------AYVPQSS- 668
M I KG+ V G G GK++LL +I + + I +G ++P+
Sbjct: 22 MTIEKGNVVNFHGPNGIGKTTLLKTISTYL-KPLKGEIIYNGVPITKVKGKIFFLPEEII 80
Query: 669 WIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728
+ ++ + + + + N+ ++ ++ + ++ LS G +R
Sbjct: 81 VPRKISVEDYLKAVASLYGVKVNK-------NEIMDALESVEVLDLKKKLGELSQGTIRR 133
Query: 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--TVLYTTHQLEFLDAA 786
+QLA + N+++Y+ DDP A+D + + K ++ +L +K ++ + +L + D
Sbjct: 134 VQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKS-ILEILKEKGIVIISSREELSYCDVN 192
Query: 787 DL 788
+
Sbjct: 193 EN 194
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 68.4 bits (167), Expect = 2e-13
Identities = 27/118 (22%), Positives = 57/118 (48%), Gaps = 9/118 (7%)
Query: 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1266
K+E+ +L V Y+ VL+ IT T + G G GK+TL++ + ++P G I
Sbjct: 2 KLEIRDLSVGYDKP---VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 58
Query: 1267 LIDGVDISMIGLQDLRSRLSIIPQDPMLFQG-TVRTNLDPLEQHSDQEIWEVKISKLL 1323
+ +GV I ++ ++ +P++ ++ + +V L + ++ + +I L
Sbjct: 59 IYNGVPI-----TKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDAL 111
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 70.4 bits (171), Expect = 2e-14
Identities = 17/178 (9%), Positives = 45/178 (25%), Gaps = 17/178 (9%)
Query: 625 KVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKD 684
K+ + G G GK++L+ I+ + ++ T +R+ +
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLG----------------KRAIGFWTEEVRDPETKKRT 45
Query: 685 MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIF 744
+ E + ++ V + A V I
Sbjct: 46 GFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIII 105
Query: 745 DDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGK 802
D+ ++ + + V+ T + + + + +
Sbjct: 106 DEI-GKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTP 162
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 57.3 bits (137), Expect = 9e-10
Identities = 10/80 (12%), Positives = 26/80 (32%)
Query: 1237 KIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQ 1296
KI + G G GK+TL++ + + + V + ++ + +
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSS 61
Query: 1297 GTVRTNLDPLEQHSDQEIWE 1316
+ + + +E
Sbjct: 62 KFFTSKKLVGSYGVNVQYFE 81
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.8 bits (120), Expect = 2e-07
Identities = 11/71 (15%), Positives = 23/71 (32%)
Query: 1236 KKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLF 1295
+ + + G G GK+TLI V++ SG + + G + + + +
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPL 61
Query: 1296 QGTVRTNLDPL 1306
Sbjct: 62 SRVGLEPPPGK 72
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 51.5 bits (121), Expect = 3e-07
Identities = 34/308 (11%), Positives = 99/308 (32%), Gaps = 8/308 (2%)
Query: 274 WKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESL 333
L + +N + L+ + GK D S L + V + + +
Sbjct: 15 KAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRS---VLLWMPLVVIGLMILRGI 71
Query: 334 TQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAGPSSGIIINMINVDVERIGDFFLYIH 393
T + + + +V + ++ M + A +++
Sbjct: 72 TSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSS 131
Query: 394 RIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDAR 453
+ V+ +++ L+ + ++ + + + + +RF S+ ++
Sbjct: 132 GALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTM 191
Query: 454 IKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLF-----WAS 508
+ T+ + ++ K + + R ++ + + SA + AS
Sbjct: 192 GQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIAS 251
Query: 509 PTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQE 568
L V+ + LT+G + ++ L P+ +L + + + + +
Sbjct: 252 LALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFA 311
Query: 569 FIKEDNQK 576
+ + +K
Sbjct: 312 ILDSEQEK 319
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 45.7 bits (106), Expect = 3e-05
Identities = 33/309 (10%), Positives = 88/309 (28%), Gaps = 9/309 (2%)
Query: 274 WKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSS----YHYGLVLASVFLFAKT 329
+ + + P LI + + H ++ +H + +
Sbjct: 13 KYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVI 72
Query: 330 VESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAGPSSGIIINMINVDVERIGDFF 389
V + + A ++ + +Y A+ ++ + +I+ + +
Sbjct: 73 VRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTK 132
Query: 390 LYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEA 449
+I + + ++I + L + + R + E
Sbjct: 133 DFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRER 192
Query: 450 KDARIKATSETLKSMR-----VLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFL 504
A + + ++ + + + R S A
Sbjct: 193 SQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAIN 252
Query: 505 FWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLY 564
+ VI G + + +T G + + + +L P+ L + + Q+ S+
Sbjct: 253 TVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMD 312
Query: 565 RIQEFIKED 573
R+ + I ED
Sbjct: 313 RVFQLIDED 321
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 38.7 bits (88), Expect = 0.004
Identities = 41/313 (13%), Positives = 99/313 (31%), Gaps = 13/313 (4%)
Query: 888 YKGALVPVILLCQVLFQALQMGSNYWIAWATDE----KRKVSREQLIGVFIFLSGGSSFF 943
YK + ++ ++ + M I +A D + E++ + I + F
Sbjct: 12 YKYRIF-ATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIF 70
Query: 944 ILGRAV-------LLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQST 996
++ R L + K + + + F+ + ++++R D
Sbjct: 71 VIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQ 130
Query: 997 VDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELAR 1056
I L + I ++ + +M ++ L I I + R+L R
Sbjct: 131 TKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTR 190
Query: 1057 MVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLR 1116
A + E + G + ++ F E+ ++ + +
Sbjct: 191 ERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAA 250
Query: 1117 INLLFNFAFFLVLIILVTLPRS-AIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMIS 1175
IN + + +V+ + L S +I Y L ++ + + S
Sbjct: 251 INTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFAS 310
Query: 1176 VERILQFTNIPSE 1188
++R+ Q + +
Sbjct: 311 MDRVFQLIDEDYD 323
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1333 | |||
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 99.97 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 99.97 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 99.97 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.96 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 99.96 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 99.96 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 99.95 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.94 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.93 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.92 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 99.85 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 99.85 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 99.84 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 99.84 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 99.84 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 99.84 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 99.82 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 99.81 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 99.81 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 99.8 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 99.8 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 99.77 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 99.77 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 99.68 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.66 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 99.6 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.21 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.83 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.79 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.58 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.38 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 97.95 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.22 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 97.16 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 96.89 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 96.77 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 96.5 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.47 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.06 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 96.03 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 95.93 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 95.89 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 95.89 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.87 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 95.79 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 95.6 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.53 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 95.52 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 95.37 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 95.31 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 95.25 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 95.2 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.16 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.02 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 95.01 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 94.99 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 94.96 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 94.96 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 94.94 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 94.93 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 94.92 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 94.9 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 94.86 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.83 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 94.81 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 94.76 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 94.72 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 94.69 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 94.64 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 94.62 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 94.55 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 94.51 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 94.32 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 94.28 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.19 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 94.18 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 94.14 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 94.13 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 94.11 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.05 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 94.05 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 94.05 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 94.04 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 94.03 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 93.99 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 93.91 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.85 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 93.85 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 93.8 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 93.73 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 93.72 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 93.64 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 93.59 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.55 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 93.52 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 93.5 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 93.4 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 93.22 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 93.18 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 93.14 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 93.14 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 93.05 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 93.02 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 93.02 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 92.99 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 92.97 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 92.93 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 92.93 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 92.88 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 92.84 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 92.8 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 92.64 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 92.61 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 92.58 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 92.5 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 92.44 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 92.44 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 92.43 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 92.4 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 92.38 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 92.33 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 92.26 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 92.26 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 92.25 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 92.24 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 92.23 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 92.2 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 92.19 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 92.04 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 92.01 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 92.01 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 91.98 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 91.95 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 91.72 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 91.66 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 91.63 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 91.57 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 91.57 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 91.55 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 91.54 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 91.52 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 91.45 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 91.45 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 91.44 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 91.38 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 91.36 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 91.29 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 91.28 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 91.24 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 91.21 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 91.16 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 91.1 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 91.01 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 90.99 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 90.99 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 90.98 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 90.97 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 90.94 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 90.94 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 90.93 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 90.9 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 90.77 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 90.75 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 90.75 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 90.72 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 90.66 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 90.66 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 90.6 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 90.57 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 90.57 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 90.53 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 90.5 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 90.47 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 90.46 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 90.36 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 90.36 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 90.26 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 90.25 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 90.24 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 90.22 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 90.19 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 90.0 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 89.87 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 89.86 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 89.85 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 89.84 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 89.84 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 89.77 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 89.76 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 89.68 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 89.64 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 89.63 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 89.55 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 89.4 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 89.4 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 89.39 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 89.36 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 89.29 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 89.27 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 89.24 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 89.2 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 89.17 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 89.07 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 89.0 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 89.0 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 88.98 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 88.96 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 88.92 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 88.91 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 88.77 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 88.76 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 88.76 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 88.72 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 88.67 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 88.58 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 88.57 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 88.56 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 88.51 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 88.4 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 88.36 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 88.36 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 88.32 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 88.32 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 88.3 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 88.3 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 88.26 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 88.24 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 88.23 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 88.22 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 88.18 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 88.17 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 88.14 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 87.99 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 87.95 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 87.94 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 87.75 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 87.71 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 87.7 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 87.61 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 87.56 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 87.52 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 87.28 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 87.26 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 87.26 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 87.13 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 87.11 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 87.09 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 87.07 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 87.03 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 86.99 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 86.91 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 86.84 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 86.81 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 86.73 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 86.72 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 86.71 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 86.69 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 86.6 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 86.47 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 86.46 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 86.44 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 86.41 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 86.35 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 86.33 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 86.32 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 86.27 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 86.17 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 86.06 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 86.05 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 86.05 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 86.0 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 85.83 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 85.72 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 85.7 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 85.67 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 85.64 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 85.57 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 85.54 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 85.48 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 85.45 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 85.44 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 85.44 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 85.33 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 85.29 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 85.27 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 85.14 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 85.12 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 85.05 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 85.02 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 85.01 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 84.9 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 84.8 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 84.79 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 84.73 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 84.6 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 84.6 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 84.59 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 84.57 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 84.47 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 84.45 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 84.4 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 84.36 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 84.22 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 84.14 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 84.11 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 84.05 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 84.0 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 83.88 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 83.66 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 83.65 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 83.56 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 83.45 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 83.32 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 83.3 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 83.26 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 83.04 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 82.95 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 82.95 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 82.92 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 82.91 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 82.55 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 82.44 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 82.44 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 82.32 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 82.28 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 82.2 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 82.19 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 82.06 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 82.05 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 82.01 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 81.94 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 81.76 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 81.73 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 81.66 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 81.61 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 81.56 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 81.47 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 81.43 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 81.43 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 81.32 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 81.28 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 81.26 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 81.16 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 81.16 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 81.09 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 81.06 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 80.79 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 80.6 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 80.53 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 80.48 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 80.45 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 80.4 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 80.38 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 80.33 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 80.21 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 80.17 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 80.15 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 80.09 |
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=400.30 Aligned_cols=224 Identities=26% Similarity=0.403 Sum_probs=207.3
Q ss_pred CEEEEEEEEECCCCCCCCCCCCCCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECC---------
Q ss_conf 089832289707865556788633237-7675189099998789999468999984897579985799979---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~v~i~G~~GsGKStLl~~ilge~~~~~G~vi~~~g--------- 659 (1333)
.|+|+|++|+|+++ ..++|+| ||++++|++++|+|++|||||||+++|+|.++|.+|++ .++|
T Consensus 1 eI~~~nvsf~Y~~~------~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I-~i~g~~i~~~~~~ 73 (241)
T d2pmka1 1 DITFRNIRFRYKPD------SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV-LIDGHDLALADPN 73 (241)
T ss_dssp EEEEEEEEEESSTT------SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE-EETTEETTTSCHH
T ss_pred CEEEEEEEEEECCC------CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEE-EECCEEECCCCHH
T ss_conf 92999999990899------9603742489984999999999999989999999973578888899-9999994400246
Q ss_pred ----EEEEECCCCCCCCCCHHHHHCCCCC-CCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf ----4799807887888878899603976-78778999999801213787520799641378889789689999999999
Q 000720 660 ----KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734 (1333)
Q Consensus 660 ----~iayv~Q~~wi~~~TireNIlfg~~-~~~~~y~~v~~~c~L~~dl~~l~~gd~t~IGe~g~~LSGGQkqRi~lARA 734 (1333)
+++||+|+|+++++||+|||.++.+ .+.+++.++.+.|.+.++++.+|.|..|.+|++|.+||||||||++||||
T Consensus 74 ~lr~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARa 153 (241)
T d2pmka1 74 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARA 153 (241)
T ss_dssp HHHHHEEEECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHH
T ss_pred HHHCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHH
T ss_conf 55352889824465578400035223575543888999999975578887632013443278788669889898754434
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHCCCEEEEEECCEEEECCCHHHHHHHCCHHH
Q ss_conf 81499899981878797999999999999988719986999547600461089899982986988258378884111699
Q 000720 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSEL 814 (1333)
Q Consensus 735 ly~~~~i~llDdp~salD~~~~~~i~~~~~~~~l~~ktvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~~ 814 (1333)
++++|+|++||||||+||+.++..+++. +..+.+++|+|+|||+++.+..||+|++|++|+|++.|++++++++++..|
T Consensus 154 l~~~p~ililDEpts~LD~~~~~~i~~~-l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y 232 (241)
T d2pmka1 154 LVNNPKILIFDEATSALDYESEHVIMRN-MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLY 232 (241)
T ss_dssp HTTCCSEEEECCCCSCCCHHHHHHHHHH-HHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHH
T ss_pred HHCCCCHHHHHCCCCCCCHHHHHHHHHH-HHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHH
T ss_conf 4416513556477655598999999999-999858998999978899998499999998999999889999982998789
Q ss_pred HHHHHHH
Q ss_conf 9999961
Q 000720 815 VRQMKAH 821 (1333)
Q Consensus 815 ~~~~~~~ 821 (1333)
.++.+.+
T Consensus 233 ~~l~~~Q 239 (241)
T d2pmka1 233 SYLYQLQ 239 (241)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999981
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=400.08 Aligned_cols=230 Identities=29% Similarity=0.422 Sum_probs=208.6
Q ss_pred CCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECC--
Q ss_conf 9889984089832289707865556788633237-7675189099998789999468999984897579985799979--
Q 000720 583 TSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-- 659 (1333)
Q Consensus 583 ~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~v~i~G~~GsGKStLl~~ilge~~~~~G~vi~~~g-- 659 (1333)
|....++.|+++|++|+|+++ ..++|+| ||+|++|++++|+|++|||||||+++|+|.+++.+|++ .++|
T Consensus 9 pl~~~~g~I~~~nvsf~Y~~~------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I-~i~g~~ 81 (255)
T d2hyda1 9 PIEIKQGRIDIDHVSFQYNDN------EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQI-LIDGHN 81 (255)
T ss_dssp CCCCCSCCEEEEEEEECSCSS------SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEE-EETTEE
T ss_pred CCCCCCCEEEEEEEEEEECCC------CCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCC-CCCCEE
T ss_conf 777778879999889995999------9760644389983998999988999809999999971278630001-539987
Q ss_pred -----------EEEEECCCCCCCCCCHHHHHCCCCC-CCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHH
Q ss_conf -----------4799807887888878899603976-7877899999980121378752079964137888978968999
Q 000720 660 -----------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (1333)
Q Consensus 660 -----------~iayv~Q~~wi~~~TireNIlfg~~-~~~~~y~~v~~~c~L~~dl~~l~~gd~t~IGe~g~~LSGGQkq 727 (1333)
+++||+|+|+++++||+|||.||.+ ..+++..++++.+.+.++++.+|+|.+|.+|++|.+|||||||
T Consensus 82 i~~~~~~~lr~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~Q 161 (255)
T d2hyda1 82 IKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQ 161 (255)
T ss_dssp GGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHH
T ss_pred CCCCCHHHHHHEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHH
T ss_conf 53078888634145651015689987999985158679999999999996979999736242010333888984999999
Q ss_pred HHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHCCCEEEEEECCEEEECCCHHHHH
Q ss_conf 99999998149989998187879799999999999998871998699954760046108989998298698825837888
Q 000720 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLI 807 (1333)
Q Consensus 728 Ri~lARAly~~~~i~llDdp~salD~~~~~~i~~~~~~~~l~~ktvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~ 807 (1333)
|++||||++++|++++||||||+||+++...+++ .+..+.+++|+|+|||+++.+..||+|++|++|+|++.|+++|++
T Consensus 162 Ri~iARal~~~p~ililDEpts~LD~~t~~~i~~-~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl 240 (255)
T d2hyda1 162 RLSIARIFLNNPPILILDEATSALDLESESIIQE-ALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELI 240 (255)
T ss_dssp HHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHH-HHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 9999999855998999837654479779999999-999875388899996899999859999999899999988999998
Q ss_pred HHCCHHHHHHHHHH
Q ss_conf 41116999999961
Q 000720 808 ADQNSELVRQMKAH 821 (1333)
Q Consensus 808 ~~~~~~~~~~~~~~ 821 (1333)
+ .+..|.++...+
T Consensus 241 ~-~~~~y~~l~~~Q 253 (255)
T d2hyda1 241 A-KQGAYEHLYSIQ 253 (255)
T ss_dssp H-TTSHHHHHHTTT
T ss_pred H-CCCHHHHHHHHC
T ss_conf 6-884999999974
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=391.35 Aligned_cols=225 Identities=28% Similarity=0.412 Sum_probs=207.3
Q ss_pred CCCEEEEEEEEECCCCCCCCCCCCCCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECC-------
Q ss_conf 84089832289707865556788633237-7675189099998789999468999984897579985799979-------
Q 000720 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (1333)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~v~i~G~~GsGKStLl~~ilge~~~~~G~vi~~~g------- 659 (1333)
.+.|+++|++|+|+.+ ..++|+| ||+|++|+++||+||+|||||||+++|+|.++|.+|++ .++|
T Consensus 11 ~g~I~~~nvsf~Y~~~------~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I-~i~g~~i~~~~ 83 (253)
T d3b60a1 11 TGDLEFRNVTFTYPGR------EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHI-LMDGHDLREYT 83 (253)
T ss_dssp CCCEEEEEEEECSSSS------SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEE-EETTEETTTBC
T ss_pred CEEEEEEEEEEEECCC------CCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEE-EECCCCCCHHH
T ss_conf 3079999889992999------9763533289985999999999999859999999862168884689-87880121110
Q ss_pred ------EEEEECCCCCCCCCCHHHHHCCCC--CCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf ------479980788788887889960397--678778999999801213787520799641378889789689999999
Q 000720 660 ------KKAYVPQSSWIQTGTIRENILFGK--DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQL 731 (1333)
Q Consensus 660 ------~iayv~Q~~wi~~~TireNIlfg~--~~~~~~y~~v~~~c~L~~dl~~l~~gd~t~IGe~g~~LSGGQkqRi~l 731 (1333)
.++||+|+|+++++|+++|+.+|. ..++++..++++.|.+.++++.+|+|.+|.+|++|.+|||||||||+|
T Consensus 84 ~~~~r~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvai 163 (253)
T d3b60a1 84 LASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAI 163 (253)
T ss_dssp HHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHH
T ss_pred HHHHHHEEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHH
T ss_conf 66542068799502544786202433205722089999999999981799997355441014348889849999999999
Q ss_pred HHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHCCCEEEEEECCEEEECCCHHHHHHHCC
Q ss_conf 99981499899981878797999999999999988719986999547600461089899982986988258378884111
Q 000720 732 ARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQN 811 (1333)
Q Consensus 732 ARAly~~~~i~llDdp~salD~~~~~~i~~~~~~~~l~~ktvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~ 811 (1333)
|||++++|++++||||||+||+.+...+++ .+..+.+++|+|+|||+++.+..||+|++|++|+|++.|+++|+++ .+
T Consensus 164 ARal~~~p~ililDEpts~LD~~~~~~i~~-~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~-~~ 241 (253)
T d3b60a1 164 ARALLRDSPILILDEATSALDTESERAIQA-ALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLA-QH 241 (253)
T ss_dssp HHHHHHCCSEEEEETTTSSCCHHHHHHHHH-HHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHH-HT
T ss_pred HHHHHCCCCEEEECCCCCCCCHHHHHHHHH-HHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHH-CC
T ss_conf 999954998899516444589889999999-9987522788999988799998599999998999999889999986-89
Q ss_pred HHHHHHHHHH
Q ss_conf 6999999961
Q 000720 812 SELVRQMKAH 821 (1333)
Q Consensus 812 ~~~~~~~~~~ 821 (1333)
..|.++.+.+
T Consensus 242 ~~y~~l~~~Q 251 (253)
T d3b60a1 242 GVYAQLHKMQ 251 (253)
T ss_dssp SSHHHHHHHT
T ss_pred CHHHHHHHHC
T ss_conf 3999999972
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=386.68 Aligned_cols=225 Identities=24% Similarity=0.337 Sum_probs=200.8
Q ss_pred CCCCEEEEEEEEECCCCCCCCCCCCCCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECC------
Q ss_conf 984089832289707865556788633237-7675189099998789999468999984897579985799979------
Q 000720 587 SDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------ 659 (1333)
Q Consensus 587 ~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~v~i~G~~GsGKStLl~~ilge~~~~~G~vi~~~g------ 659 (1333)
.++.|+++|++|+|+.. ++.++|+| ||++++|++++|+||||||||||+++|+|.++|.+|+| .++|
T Consensus 8 ~~g~I~~~nvsf~Y~~~-----~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I-~i~g~~i~~~ 81 (251)
T d1jj7a_ 8 LEGLVQFQDVSFAYPNR-----PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQL-LLDGKPLPQY 81 (251)
T ss_dssp CCCCEEEEEEEECCTTS-----TTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE-EETTEEGGGB
T ss_pred CCCEEEEEEEEEECCCC-----CCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE-EECCEECCHH
T ss_conf 53369999989988999-----99976744389984998999999999849999999861437876899-8899853110
Q ss_pred -------EEEEECCCCCCCCCCHHHHHCCCCCC--CHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf -------47998078878888788996039767--877899999980121378752079964137888978968999999
Q 000720 660 -------KKAYVPQSSWIQTGTIRENILFGKDM--RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1333)
Q Consensus 660 -------~iayv~Q~~wi~~~TireNIlfg~~~--~~~~y~~v~~~c~L~~dl~~l~~gd~t~IGe~g~~LSGGQkqRi~ 730 (1333)
+++||+|+|+++++|++|||.+|... ......+..+.+.+...++.+|.|.+|.++++|.+||||||||++
T Consensus 82 ~~~~~r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRva 161 (251)
T d1jj7a_ 82 EHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVA 161 (251)
T ss_dssp CHHHHHHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEE
T ss_conf 13788877654045650027634655454210130278899999999899999856121113675167668954704899
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEECCCHHHHHCCCEEEEEECCEEEECCCHHHHHH
Q ss_conf 99998149989998187879799999999999998871--9986999547600461089899982986988258378884
Q 000720 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 731 lARAly~~~~i~llDdp~salD~~~~~~i~~~~~~~~l--~~ktvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~ 808 (1333)
||||++++|+|++||||||+||+++...+++. +..+. .++|+|+|||+++.+..||+|++|++|+|++.|+++|+++
T Consensus 162 iARal~~~p~ililDEpTs~LD~~~~~~i~~~-l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~ 240 (251)
T d1jj7a_ 162 LARALIRKPCVLILDDATSALDANSQLQVEQL-LYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLME 240 (251)
T ss_dssp HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHH-HHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEECCCCCCCEEEECCCCCCCCHHHHHHHHHH-HHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 86044568707871675765685368999999-99976506989999959799998599999998999999889999985
Q ss_pred HCCHHHHHHHH
Q ss_conf 11169999999
Q 000720 809 DQNSELVRQMK 819 (1333)
Q Consensus 809 ~~~~~~~~~~~ 819 (1333)
.+..|.++++
T Consensus 241 -~~~~y~~l~~ 250 (251)
T d1jj7a_ 241 -KKGCYWAMVQ 250 (251)
T ss_dssp -HTSHHHHHHC
T ss_pred -CCCHHHHHHC
T ss_conf -9758899962
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=386.54 Aligned_cols=221 Identities=28% Similarity=0.447 Sum_probs=201.8
Q ss_pred EEEEEEEEECCCCCCCCCCCCCCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECC----------
Q ss_conf 89832289707865556788633237-7675189099998789999468999984897579985799979----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~v~i~G~~GsGKStLl~~ilge~~~~~G~vi~~~g---------- 659 (1333)
|+++|++|+|+++ .++|+| ||++++|++++|+||+|||||||+++|+|.++|.+|++ .++|
T Consensus 2 le~knvsf~Y~~~-------~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I-~i~g~~i~~~~~~~ 73 (242)
T d1mv5a_ 2 LSARHVDFAYDDS-------EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI-TIDGQPIDNISLEN 73 (242)
T ss_dssp EEEEEEEECSSSS-------SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCE-EETTEESTTTSCSC
T ss_pred EEEEEEEEECCCC-------CCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEE-EECCEEECCCCHHH
T ss_conf 7999889987999-------841422589985999999999999979999999999609898779-88998844246788
Q ss_pred ---EEEEECCCCCCCCCCHHHHHCCCCC--CCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf ---4799807887888878899603976--78778999999801213787520799641378889789689999999999
Q 000720 660 ---KKAYVPQSSWIQTGTIRENILFGKD--MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734 (1333)
Q Consensus 660 ---~iayv~Q~~wi~~~TireNIlfg~~--~~~~~y~~v~~~c~L~~dl~~l~~gd~t~IGe~g~~LSGGQkqRi~lARA 734 (1333)
+++||+|+|+++++|++||+.++.. ..++...++.+.+.+...+..+|+|..|.+|++|.+|||||||||+||||
T Consensus 74 ~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARa 153 (242)
T d1mv5a_ 74 WRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARA 153 (242)
T ss_dssp CTTTCCEECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHH
T ss_pred HHHHEEEECCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 87436797566545785345430124455542356778999997555420374210152368789879999999999999
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHCCCEEEEEECCEEEECCCHHHHHHHCCHHH
Q ss_conf 81499899981878797999999999999988719986999547600461089899982986988258378884111699
Q 000720 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSEL 814 (1333)
Q Consensus 735 ly~~~~i~llDdp~salD~~~~~~i~~~~~~~~l~~ktvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~~ 814 (1333)
++++|+|++||||||+||+++...+++ .+..+.+++|+|+|||+++.+..||+|++|++|+|++.|+++|+++ .+..|
T Consensus 154 l~~~p~ililDEpts~LD~~~~~~i~~-~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~-~~~~y 231 (242)
T d1mv5a_ 154 FLRNPKILMLDEATASLDSESESMVQK-ALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVA-THPLY 231 (242)
T ss_dssp HHHCCSEEEEECCSCSSCSSSCCHHHH-HHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHH-HCHHH
T ss_pred HHCCCCEEEECCCCCCCCHHHHHHHHH-HHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHH-CCHHH
T ss_conf 852998999658865569889999988-7888717998999978799998499999998999999999999986-89699
Q ss_pred HHHHHHH
Q ss_conf 9999961
Q 000720 815 VRQMKAH 821 (1333)
Q Consensus 815 ~~~~~~~ 821 (1333)
.++++.+
T Consensus 232 ~~l~~~Q 238 (242)
T d1mv5a_ 232 AKYVSEQ 238 (242)
T ss_dssp HHHHHCC
T ss_pred HHHHHHH
T ss_conf 9999998
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=382.21 Aligned_cols=208 Identities=38% Similarity=0.691 Sum_probs=195.7
Q ss_pred CCCCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCEEEEECCCCCCCCCCHHHHHCCCCCCCHH
Q ss_conf 8633237-767518909999878999946899998489757998579997947998078878888788996039767877
Q 000720 610 PTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQS 688 (1333)
Q Consensus 610 ~~~~L~~-nl~i~~G~~v~i~G~~GsGKStLl~~ilge~~~~~G~vi~~~g~iayv~Q~~wi~~~TireNIlfg~~~~~~ 688 (1333)
..|+|+| ||+|++|++++|+||||||||||+++|+|++++.+|.+ .++|+++|++|+||++++|++|||.||..+++.
T Consensus 48 g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I-~~~g~i~~v~Q~~~l~~~tv~eni~~~~~~~~~ 126 (281)
T d1r0wa_ 48 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGII-KHSGRVSFCSQFSWIMPGTIKENIIFGVSYDEY 126 (281)
T ss_dssp TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEE-ECCSCEEEECSSCCCCSEEHHHHHTTTSCCCHH
T ss_pred CCEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEE-EECCEEEEEECCCCCCCCEEECCCCCCCCCCCH
T ss_conf 9767737599985999999998999829999999957974788289-999999998164302676032142033345605
Q ss_pred HHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 89999998012137875207996413788897896899999999998149989998187879799999999999998871
Q 000720 689 FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL 768 (1333)
Q Consensus 689 ~y~~v~~~c~L~~dl~~l~~gd~t~IGe~g~~LSGGQkqRi~lARAly~~~~i~llDdp~salD~~~~~~i~~~~~~~~l 768 (1333)
+++++++.|.+..++..+++++.|.+|++|.+||||||||++||||++++|++++||||||+||+.+...+++.++....
T Consensus 127 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~ 206 (281)
T d1r0wa_ 127 RYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLM 206 (281)
T ss_dssp HHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCT
T ss_pred HHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 79999999776999984612332355554237799999999999999869635133385544898999999999998862
Q ss_pred CCCEEEEECCCHHHHHCCCEEEEEECCEEEECCCHHHHHHHCCHHHHHHHH
Q ss_conf 998699954760046108989998298698825837888411169999999
Q 000720 769 SQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMK 819 (1333)
Q Consensus 769 ~~ktvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~~~~~ 819 (1333)
+++|+|+|||+++.+..||+|++|++|+|++.|+++|++. ...+|...+.
T Consensus 207 ~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~-~~~~~~~~~~ 256 (281)
T d1r0wa_ 207 ANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQS-LRPDFSSKLM 256 (281)
T ss_dssp TTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHH-HCHHHHHHHH
T ss_pred CCCEEEEEECHHHHHHHCCEEEEEECCEEEEECCHHHHHC-CCCHHHHHHC
T ss_conf 8999999925289998599999998999999878999960-5948999872
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=2.4e-38 Score=303.35 Aligned_cols=204 Identities=25% Similarity=0.317 Sum_probs=169.6
Q ss_pred CEEEEEEEEECCCCCCCCCCCCCCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCE--------
Q ss_conf 089832289707865556788633237-76751890999987899994689999848975799857999794--------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-------- 660 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~v~i~G~~GsGKStLl~~ilge~~~~~G~vi~~~g~-------- 660 (1333)
.|+++|.+++|++ ...|++ ||++++||+++|+||||||||||+++|.|.++|++|++ .++|+
T Consensus 6 ~I~v~nlsk~yg~--------~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I-~i~g~~i~~~~~~ 76 (239)
T d1v43a3 6 EVKLENLTKRFGN--------FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI-YFGDRDVTYLPPK 76 (239)
T ss_dssp CEEEEEEEEEETT--------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEE-EETTEECTTSCGG
T ss_pred EEEEEEEEEEECC--------EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEE-EECCEECCCCCCC
T ss_conf 4999879999999--------999813067887998999999999829999999975899987879-9916413547700
Q ss_pred ---EEEECCCCCCC-CCCHHHHHCCCCCC---CHH----HHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf ---79980788788-88788996039767---877----89999998012137875207996413788897896899999
Q 000720 661 ---KAYVPQSSWIQ-TGTIRENILFGKDM---RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1333)
Q Consensus 661 ---iayv~Q~~wi~-~~TireNIlfg~~~---~~~----~y~~v~~~c~L~~dl~~l~~gd~t~IGe~g~~LSGGQkqRi 729 (1333)
++||+|+|-++ +.|++||+.|+... +++ +-+++++.+.|. .........||||||||+
T Consensus 77 ~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSGGq~QRv 145 (239)
T d1v43a3 77 DRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIE-----------ELLNRYPAQLSGGQRQRV 145 (239)
T ss_dssp GGTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCG-----------GGTTSCTTTCCSSCHHHH
T ss_pred CCEEEEEEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCH-----------HHHCCCHHHCCHHHHHHH
T ss_conf 015899800335342220999999999873999999999999999875985-----------566099546999998899
Q ss_pred HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-H-CCCEEEEECCCHHHHHC-CCEEEEEECCEEEECCCHHHH
Q ss_conf 99999814998999818787979999999999999887-1-99869995476004610-898999829869882583788
Q 000720 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-L-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDL 806 (1333)
Q Consensus 730 ~lARAly~~~~i~llDdp~salD~~~~~~i~~~~~~~~-l-~~ktvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l 806 (1333)
+||||+..+|++++|||||++||+.+...+.+. +..+ . .++|+|+|||+++.... ||+|++|++|+|++.|+.+++
T Consensus 146 aiAraL~~~P~iLllDEPts~LD~~~~~~i~~l-l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el 224 (239)
T d1v43a3 146 AVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAE-IKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEV 224 (239)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHH-HHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHH-HHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHH
T ss_conf 997664049982430688666898999899999-9999873198079994899999986999999989999998599999
Q ss_pred HHHCCHHH
Q ss_conf 84111699
Q 000720 807 IADQNSEL 814 (1333)
Q Consensus 807 ~~~~~~~~ 814 (1333)
.+++..++
T Consensus 225 ~~~P~~~~ 232 (239)
T d1v43a3 225 YLRPNSVF 232 (239)
T ss_dssp HHCCSBHH
T ss_pred HHCCCCHH
T ss_conf 86899989
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8.5e-39 Score=306.85 Aligned_cols=204 Identities=26% Similarity=0.361 Sum_probs=169.0
Q ss_pred EEEEEEEEECCCCCCCCCCCCCCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECC----------
Q ss_conf 89832289707865556788633237-7675189099998789999468999984897579985799979----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~v~i~G~~GsGKStLl~~ilge~~~~~G~vi~~~g---------- 659 (1333)
|+++|.+++|+. ...|+| ||++++||+++|+||||||||||+++|.|..+|++|++ .++|
T Consensus 1 Iev~nv~k~yg~--------~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I-~i~g~~i~~~~~~~ 71 (232)
T d2awna2 1 VQLQNVTKAWGE--------VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL-FIGEKRMNDTPPAE 71 (232)
T ss_dssp EEEEEEEEEETT--------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEE-EESSSCCTTSCGGG
T ss_pred CEEEEEEEEECC--------EEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEE-EECCEECCCCCHHH
T ss_conf 999999999899--------999811177886998999998999829999999965878888889-99999778886444
Q ss_pred -EEEEECCCCCCC-CCCHHHHHCCCCCCCH-------HHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf -479980788788-8878899603976787-------7899999980121378752079964137888978968999999
Q 000720 660 -KKAYVPQSSWIQ-TGTIRENILFGKDMRQ-------SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1333)
Q Consensus 660 -~iayv~Q~~wi~-~~TireNIlfg~~~~~-------~~y~~v~~~c~L~~dl~~l~~gd~t~IGe~g~~LSGGQkqRi~ 730 (1333)
+++||+|+|-++ +.|++||+.|+..... ++-.++++...|... .......||||||||++
T Consensus 72 r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~-----------~~~~~~~LSGGqkQRva 140 (232)
T d2awna2 72 RGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHL-----------LDRKPKALSGGQRQRVA 140 (232)
T ss_dssp TCEEEECSSCCC---------------------CHHHHHHHHHHHHC--------------------------------C
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHH-----------HHCCHHHCCHHHHHHHH
T ss_conf 3222343342026433378897899987599889999999999975788656-----------64896569999999999
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEECCCHHHHHC-CCEEEEEECCEEEECCCHHHHHH
Q ss_conf 9999814998999818787979999999999999887-199869995476004610-89899982986988258378884
Q 000720 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 731 lARAly~~~~i~llDdp~salD~~~~~~i~~~~~~~~-l~~ktvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~ 808 (1333)
||||+..+|++++|||||++||+.+...+.+....-. ..++|+|++||+++.... ||+|++|++|+|++.|+.+++++
T Consensus 141 iAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~ 220 (232)
T d2awna2 141 IGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 220 (232)
T ss_dssp HHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHH
T ss_conf 99997039988997588878898899899999999987429879999489999999699999997999999808999973
Q ss_pred HCCHHH
Q ss_conf 111699
Q 000720 809 DQNSEL 814 (1333)
Q Consensus 809 ~~~~~~ 814 (1333)
.+...+
T Consensus 221 ~P~~~~ 226 (232)
T d2awna2 221 YPADRF 226 (232)
T ss_dssp SCSBHH
T ss_pred CCCCHH
T ss_conf 899979
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=2e-38 Score=303.94 Aligned_cols=205 Identities=26% Similarity=0.299 Sum_probs=169.9
Q ss_pred CEEEEEEEEECCCCCCCCCCCCCCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECC---------
Q ss_conf 089832289707865556788633237-7675189099998789999468999984897579985799979---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~v~i~G~~GsGKStLl~~ilge~~~~~G~vi~~~g--------- 659 (1333)
.|+++|.+.+|+.. ....|+| ||++++||.++|+||||||||||+++|.|..+|++|++ .++|
T Consensus 3 ~i~v~nlsk~y~~g------~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I-~~~g~~i~~~~~~ 75 (242)
T d1oxxk2 3 RIIVKNVSKVFKKG------KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL-YFDDRLVASNGKL 75 (242)
T ss_dssp CEEEEEEEEEEGGG------TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEE-EETTEEEEETTEE
T ss_pred EEEEEEEEEEECCC------CEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE-EECCEEEECCCHH
T ss_conf 89997579998899------9899804078987998999998999809999999975868887459-9999995137311
Q ss_pred -------EEEEECCCCCCC-CCCHHHHHCCCCCC---CH----HHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHH
Q ss_conf -------479980788788-88788996039767---87----7899999980121378752079964137888978968
Q 000720 660 -------KKAYVPQSSWIQ-TGTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1333)
Q Consensus 660 -------~iayv~Q~~wi~-~~TireNIlfg~~~---~~----~~y~~v~~~c~L~~dl~~l~~gd~t~IGe~g~~LSGG 724 (1333)
+++||+|+|-++ +.|++|||.|+... ++ ++-+++++.+.|.+. .......||||
T Consensus 76 ~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~-----------~~~~p~~LSGG 144 (242)
T d1oxxk2 76 IVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHV-----------LNHFPRELSGA 144 (242)
T ss_dssp SSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGG-----------TTSCGGGSCHH
T ss_pred HCCHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHH-----------HHCCHHHCCHH
T ss_conf 1531204514773043346666577776655676137999999999999866591766-----------64895459999
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-H-CCCEEEEECCCHHHHH-CCCEEEEEECCEEEECC
Q ss_conf 9999999999814998999818787979999999999999887-1-9986999547600461-08989998298698825
Q 000720 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-L-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSG 801 (1333)
Q Consensus 725 QkqRi~lARAly~~~~i~llDdp~salD~~~~~~i~~~~~~~~-l-~~ktvilvtH~~~~l~-~~d~i~~l~~G~i~~~G 801 (1333)
||||++||||+..+|+++++||||++||+.+...+.+. +..+ . .+.|+|+|||+++.+. .||+|++|++|+|++.|
T Consensus 145 qkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~-i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g 223 (242)
T d1oxxk2 145 QQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARAL-VKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVG 223 (242)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHH-HHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHH-HHHHHHCCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEC
T ss_conf 98589987577604661454478667998998899899-99998635987999979999999969999999899999986
Q ss_pred CHHHHHHHCCHH
Q ss_conf 837888411169
Q 000720 802 KYEDLIADQNSE 813 (1333)
Q Consensus 802 ~~~~l~~~~~~~ 813 (1333)
+++++.+++...
T Consensus 224 ~~~el~~~P~~~ 235 (242)
T d1oxxk2 224 KPEDLYDNPVSI 235 (242)
T ss_dssp CHHHHHHSCSSH
T ss_pred CHHHHHHCCCCH
T ss_conf 999998689997
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=2.9e-38 Score=302.80 Aligned_cols=204 Identities=25% Similarity=0.344 Sum_probs=168.5
Q ss_pred CEEEEEEEEECCCCCCCCCCCCCCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECC---------
Q ss_conf 089832289707865556788633237-7675189099998789999468999984897579985799979---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~v~i~G~~GsGKStLl~~ilge~~~~~G~vi~~~g--------- 659 (1333)
.|+++|.+.+|+. ...|+| ||++++||+++++||||||||||+++|.|.++|++|++ .++|
T Consensus 3 ~i~v~nl~k~yg~--------~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I-~~~g~~i~~~~~~ 73 (240)
T d1g2912 3 GVRLVDVWKVFGE--------VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI-YIGDKLVADPEKG 73 (240)
T ss_dssp EEEEEEEEEEETT--------EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEE-EETTEEEEEGGGT
T ss_pred CEEEEEEEEEECC--------EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEE-EECCEEECCCCHH
T ss_conf 1899869999899--------999856066886998999999999809999999964878898989-9999980356644
Q ss_pred --------EEEEECCCCCCCC-CCHHHHHCCCCCC---C-HH---HHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCH
Q ss_conf --------4799807887888-8788996039767---8-77---89999998012137875207996413788897896
Q 000720 660 --------KKAYVPQSSWIQT-GTIRENILFGKDM---R-QS---FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1333)
Q Consensus 660 --------~iayv~Q~~wi~~-~TireNIlfg~~~---~-~~---~y~~v~~~c~L~~dl~~l~~gd~t~IGe~g~~LSG 723 (1333)
+++||+|+|-++. .|++||+.|+... + ++ +-+++++.+.|.. ........|||
T Consensus 74 ~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~-----------~~~~~p~~LSG 142 (240)
T d1g2912 74 IFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTE-----------LLNRKPRELSG 142 (240)
T ss_dssp EECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGG-----------GTTCCGGGSCH
T ss_pred HHCCCCCCCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHH-----------HHCCCHHHCCH
T ss_conf 4245322551200221222310116676330687729998999999999998759966-----------76299334999
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-HC-CCEEEEECCCHHHHHC-CCEEEEEECCEEEEC
Q ss_conf 89999999999814998999818787979999999999999887-19-9869995476004610-898999829869882
Q 000720 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LS-QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQS 800 (1333)
Q Consensus 724 GQkqRi~lARAly~~~~i~llDdp~salD~~~~~~i~~~~~~~~-l~-~ktvilvtH~~~~l~~-~d~i~~l~~G~i~~~ 800 (1333)
|||||++||||+..+|++++|||||++||+.+...+.+ .+..+ .+ +.|+|++||+++.+.. ||+|++|++|+|++.
T Consensus 143 GqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~-~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~ 221 (240)
T d1g2912 143 GQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRA-ELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQV 221 (240)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHH-HHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHH-HHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEE
T ss_conf 99999999999826998898258876569899989999-99999863698899995999999996999999989999998
Q ss_pred CCHHHHHHHCCHHH
Q ss_conf 58378884111699
Q 000720 801 GKYEDLIADQNSEL 814 (1333)
Q Consensus 801 G~~~~l~~~~~~~~ 814 (1333)
|+++|++.++...+
T Consensus 222 G~~~el~~~P~~~~ 235 (240)
T d1g2912 222 GSPDEVYDKPANTF 235 (240)
T ss_dssp ECHHHHHHSCSBHH
T ss_pred CCHHHHHHCCCCHH
T ss_conf 59999982899989
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=5.9e-38 Score=300.48 Aligned_cols=199 Identities=29% Similarity=0.410 Sum_probs=168.3
Q ss_pred EEEEEEEEECCCCCCCCCCCCCCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECC----------
Q ss_conf 89832289707865556788633237-7675189099998789999468999984897579985799979----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~v~i~G~~GsGKStLl~~ilge~~~~~G~vi~~~g---------- 659 (1333)
|+++|.+++|+. ..|+| ||++++||+++|+||||||||||+++|.|.++|++|++ .++|
T Consensus 2 i~v~nlsk~y~~---------~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I-~~~G~~i~~~~~~~ 71 (229)
T d3d31a2 2 IEIESLSRKWKN---------FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI-LLDGKDVTDLSPEK 71 (229)
T ss_dssp EEEEEEEEECSS---------CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEE-EETTEECTTSCHHH
T ss_pred EEEEEEEEEECC---------EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE-EECCEECCCCCHHH
T ss_conf 899989999499---------78843378987998999998999829999999964768887889-99567346521657
Q ss_pred -EEEEECCCCCCC-CCCHHHHHCCCCC----CCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf -479980788788-8878899603976----7877899999980121378752079964137888978968999999999
Q 000720 660 -KKAYVPQSSWIQ-TGTIRENILFGKD----MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733 (1333)
Q Consensus 660 -~iayv~Q~~wi~-~~TireNIlfg~~----~~~~~y~~v~~~c~L~~dl~~l~~gd~t~IGe~g~~LSGGQkqRi~lAR 733 (1333)
+++||+|++-++ +.|++||+.|+.. .++++..++++...+... .......||||||||++|||
T Consensus 72 r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSGG~~QRvaiAr 140 (229)
T d3d31a2 72 HDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHL-----------LDRNPLTLSGGEQQRVALAR 140 (229)
T ss_dssp HTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTT-----------TTSCGGGSCHHHHHHHHHHH
T ss_pred HCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHH-----------HHCCHHHCCHHHHCCHHHHH
T ss_conf 4056151211117466577888887764055389999999998256555-----------75895547999840140304
Q ss_pred HHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-H-CCCEEEEECCCHHHHHC-CCEEEEEECCEEEECCCHHHHHHHC
Q ss_conf 9814998999818787979999999999999887-1-99869995476004610-8989998298698825837888411
Q 000720 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-L-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIADQ 810 (1333)
Q Consensus 734 Aly~~~~i~llDdp~salD~~~~~~i~~~~~~~~-l-~~ktvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~~ 810 (1333)
|+..+|++++|||||++||+++...+.+. +..+ . .+.|+|++||+++.... ||+|++|++|+|++.|+++++++++
T Consensus 141 aL~~~P~iLllDEPts~LD~~~~~~i~~~-l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P 219 (229)
T d3d31a2 141 ALVTNPKILLLDEPLSALDPRTQENAREM-LSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKP 219 (229)
T ss_dssp HTTSCCSEEEEESSSTTSCHHHHHHHHHH-HHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSC
T ss_pred HHHCCCCCEEECCCCCCCCHHHHHHHHHH-HHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 34436771443478767998999999999-99998647968999749999999969999999799999986999998689
Q ss_pred C
Q ss_conf 1
Q 000720 811 N 811 (1333)
Q Consensus 811 ~ 811 (1333)
.
T Consensus 220 ~ 220 (229)
T d3d31a2 220 V 220 (229)
T ss_dssp C
T ss_pred C
T ss_conf 9
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.9e-37 Score=295.26 Aligned_cols=207 Identities=25% Similarity=0.344 Sum_probs=170.5
Q ss_pred CEEEEEEEEECCCCCCCCCCCCCCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECC---------
Q ss_conf 089832289707865556788633237-7675189099998789999468999984897579985799979---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~v~i~G~~GsGKStLl~~ilge~~~~~G~vi~~~g--------- 659 (1333)
.++++|.+++|+. ...|+| ||++++||+++|+|+||||||||+++|.|..++++|++ .++|
T Consensus 2 ~Lev~nl~k~yg~--------~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I-~~~G~~i~~~~~~ 72 (258)
T d1b0ua_ 2 KLHVIDLHKRYGG--------HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI-IVNGQNINLVRDK 72 (258)
T ss_dssp CEEEEEEEEEETT--------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEE-EETTEECCEEECT
T ss_pred EEEEEEEEEEECC--------EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCE-EECCEEECCCCCC
T ss_conf 6999978999899--------998815066886997999998999829999999974766789977-9999993367752
Q ss_pred -----------------EEEEECCCCCCCC-CCHHHHHCCCC----CCCH----HHHHHHHHHCCCCHHHHHHCCCCCCC
Q ss_conf -----------------4799807887888-87889960397----6787----78999999801213787520799641
Q 000720 660 -----------------KKAYVPQSSWIQT-GTIRENILFGK----DMRQ----SFYEEVLEGCALNQDIEMWADGDLSV 713 (1333)
Q Consensus 660 -----------------~iayv~Q~~wi~~-~TireNIlfg~----~~~~----~~y~~v~~~c~L~~dl~~l~~gd~t~ 713 (1333)
+++||+|+|-++. .|+.||+.++. ..++ ++..++++.+.+.+....
T Consensus 73 ~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------- 144 (258)
T d1b0ua_ 73 DGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQG-------- 144 (258)
T ss_dssp TSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHT--------
T ss_pred CHHCCCCCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHC--------
T ss_conf 000023517679997454489983323141101021365657876299989999999999998299524430--------
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHC-CCEEEEE
Q ss_conf 378889789689999999999814998999818787979999999999999887199869995476004610-8989998
Q 000720 714 VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVM 792 (1333)
Q Consensus 714 IGe~g~~LSGGQkqRi~lARAly~~~~i~llDdp~salD~~~~~~i~~~~~~~~l~~ktvilvtH~~~~l~~-~d~i~~l 792 (1333)
.....||||||||++||||+..+|+++++||||++||+.+...+.+....-..+++|+|+|||+++.+.. ||+|++|
T Consensus 145 --~~p~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm 222 (258)
T d1b0ua_ 145 --KYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFL 222 (258)
T ss_dssp --SCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEE
T ss_pred --CCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCEEEEE
T ss_conf --682205677888989999984399878852455568878888998765541036883389948999999869999999
Q ss_pred ECCEEEECCCHHHHHHHCCHHHH
Q ss_conf 29869882583788841116999
Q 000720 793 KDGKIEQSGKYEDLIADQNSELV 815 (1333)
Q Consensus 793 ~~G~i~~~G~~~~l~~~~~~~~~ 815 (1333)
++|+|++.|+++|+++++..++.
T Consensus 223 ~~G~iv~~g~~~ev~~~P~~~~~ 245 (258)
T d1b0ua_ 223 HQGKIEEEGDPEQVFGNPQSPRL 245 (258)
T ss_dssp ETTEEEEEECHHHHHHSCCSHHH
T ss_pred ECCEEEEECCHHHHHHCCCCHHH
T ss_conf 79999998499999838999999
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.6e-38 Score=302.08 Aligned_cols=202 Identities=23% Similarity=0.303 Sum_probs=166.5
Q ss_pred EEEEEEEEECCCCCCCCCCCCCCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECC----------
Q ss_conf 89832289707865556788633237-7675189099998789999468999984897579985799979----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~v~i~G~~GsGKStLl~~ilge~~~~~G~vi~~~g---------- 659 (1333)
|+++|.+.+|+.+. .....|+| ||++++||+++|+||||||||||+++|.|..+|++|++ .++|
T Consensus 2 i~v~nlsk~y~~~~----~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I-~~~g~~i~~~~~~~ 76 (240)
T d3dhwc1 2 IKLSNITKVFHQGT----RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSV-LVDGQELTTLSESE 76 (240)
T ss_dssp EEEEEEEEEEECSS----CEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEE-EETTEEECTTCHHH
T ss_pred EEEEEEEEEECCCC----EEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCE-EECCEEEEECCHHH
T ss_conf 79982799969998----14898615057886997999989998988899998758863667732-88676852087555
Q ss_pred ------EEEEECCCCCCCC-CCHHHHHCCCCC---CC-H---HHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHH
Q ss_conf ------4799807887888-878899603976---78-7---78999999801213787520799641378889789689
Q 000720 660 ------KKAYVPQSSWIQT-GTIRENILFGKD---MR-Q---SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1333)
Q Consensus 660 ------~iayv~Q~~wi~~-~TireNIlfg~~---~~-~---~~y~~v~~~c~L~~dl~~l~~gd~t~IGe~g~~LSGGQ 725 (1333)
+++||+|+|-++. .|++|||.++.. .. + ++-.+.++.+.|.+ ........|||||
T Consensus 77 ~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~-----------~~~~~~~~LSGG~ 145 (240)
T d3dhwc1 77 LTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGD-----------KHDSYPSNLSGGQ 145 (240)
T ss_dssp HHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTT-----------TTSSCBSCCCHHH
T ss_pred HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCH-----------HHHCCHHHCCHHH
T ss_conf 11554166430225222799649999999999849998999999999999769903-----------5548943499999
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEECCCHHHHHC-CCEEEEEECCEEEECCCH
Q ss_conf 99999999981499899981878797999999999999988719-9869995476004610-898999829869882583
Q 000720 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKY 803 (1333)
Q Consensus 726 kqRi~lARAly~~~~i~llDdp~salD~~~~~~i~~~~~~~~l~-~ktvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~ 803 (1333)
|||++||||+..+|+++++||||++||+.++..+++....-..+ +.|+|+|||+++.+.. ||+|++|++|+|++.|++
T Consensus 146 ~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~ 225 (240)
T d3dhwc1 146 KQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTV 225 (240)
T ss_dssp HHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEET
T ss_pred HHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCH
T ss_conf 98999864010589868744655658988856799999999864697899983899999986999999979999998799
Q ss_pred HHHHH
Q ss_conf 78884
Q 000720 804 EDLIA 808 (1333)
Q Consensus 804 ~~l~~ 808 (1333)
+++++
T Consensus 226 ~ei~~ 230 (240)
T d3dhwc1 226 SEVFS 230 (240)
T ss_dssp TTTTC
T ss_pred HHHHH
T ss_conf 99972
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.4e-37 Score=297.65 Aligned_cols=200 Identities=26% Similarity=0.359 Sum_probs=159.7
Q ss_pred EEEEEEEEECCCCCCCCCCCCCCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECC----------
Q ss_conf 89832289707865556788633237-7675189099998789999468999984897579985799979----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~v~i~G~~GsGKStLl~~ilge~~~~~G~vi~~~g---------- 659 (1333)
|+++|.+++|+... .....|+| ||++++||+++|+||+|||||||+++|.|..+|++|++ .++|
T Consensus 2 I~i~nlsk~y~~~~----~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I-~~~g~~i~~~~~~~ 76 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGE----EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEV-YIDNIKTNDLDDDE 76 (230)
T ss_dssp EEEEEEEEEEEETT----EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE-EETTEECTTCCHHH
T ss_pred EEEEEEEEEECCCC----EEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEE-EECCEECCCCCHHH
T ss_conf 89990799948998----20898713377884997999988999982165575068877776626-99999857688555
Q ss_pred -------EEEEECCCCCCC-CCCHHHHHCCCCCC------C-HHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHH
Q ss_conf -------479980788788-88788996039767------8-77899999980121378752079964137888978968
Q 000720 660 -------KKAYVPQSSWIQ-TGTIRENILFGKDM------R-QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1333)
Q Consensus 660 -------~iayv~Q~~wi~-~~TireNIlfg~~~------~-~~~y~~v~~~c~L~~dl~~l~~gd~t~IGe~g~~LSGG 724 (1333)
+++||+|+|-++ +.|++||+.++..+ + +++.+++.+...+. .+++ ........+||||
T Consensus 77 ~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~L~~---~~~~~~p~~LSGG 149 (230)
T d1l2ta_ 77 LTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMA----ELEE---RFANHKPNQLSGG 149 (230)
T ss_dssp HHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHT----TCCG---GGTTCCGGGSCHH
T ss_pred CCHHHCCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH----CHHH---HHHCCCHHHCCHH
T ss_conf 12312555778804124176866888775788872247899999999999988762----4234---5534880238999
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-H-CCCEEEEECCCHHHHHCCCEEEEEECCEEEECCC
Q ss_conf 9999999999814998999818787979999999999999887-1-9986999547600461089899982986988258
Q 000720 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-L-SQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGK 802 (1333)
Q Consensus 725 QkqRi~lARAly~~~~i~llDdp~salD~~~~~~i~~~~~~~~-l-~~ktvilvtH~~~~l~~~d~i~~l~~G~i~~~G~ 802 (1333)
||||++||||+..+|+++++|||||+||+.++..+++. +..+ . .++|+|+|||+++....||+|++|++|+|++.|+
T Consensus 150 qkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~-l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~ 228 (230)
T d1l2ta_ 150 QQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQL-LKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEK 228 (230)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHH-HHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHH-HHHHHHHHCCEEEEECCCHHHHHHCCEEEEEECCEEEEECC
T ss_conf 99999987565227888994687654698999999999-99999843999999878889998699899998999999525
Q ss_pred H
Q ss_conf 3
Q 000720 803 Y 803 (1333)
Q Consensus 803 ~ 803 (1333)
.
T Consensus 229 ~ 229 (230)
T d1l2ta_ 229 L 229 (230)
T ss_dssp C
T ss_pred C
T ss_conf 7
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=3.2e-36 Score=287.32 Aligned_cols=207 Identities=22% Similarity=0.310 Sum_probs=167.1
Q ss_pred CCCCEEEEEEEEECCCCCCCCCCCCCCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCE-----
Q ss_conf 984089832289707865556788633237-76751890999987899994689999848975799857999794-----
Q 000720 587 SDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK----- 660 (1333)
Q Consensus 587 ~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~v~i~G~~GsGKStLl~~ilge~~~~~G~vi~~~g~----- 660 (1333)
++..++++|.+++|.. ...|+| ||++++||+++++||||||||||+++|.|.++|.+|++ .++|+
T Consensus 3 sd~~Lev~~l~k~yg~--------~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I-~~~G~~i~~~ 73 (240)
T d1ji0a_ 3 SDIVLEVQSLHVYYGA--------IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI-IFNGQDITNK 73 (240)
T ss_dssp CSEEEEEEEEEEEETT--------EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE-EETTEECTTC
T ss_pred CCEEEEEEEEEEEECC--------EEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE-EECCCCCCCC
T ss_conf 5607999618999899--------888830257888997999999999859999999967888880389-8424434466
Q ss_pred ---------EEEECCCCCCCC-CCHHHHHCCCCCC--CHHH-HHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHH
Q ss_conf ---------799807887888-8788996039767--8778-99999980121378752079964137888978968999
Q 000720 661 ---------KAYVPQSSWIQT-GTIRENILFGKDM--RQSF-YEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (1333)
Q Consensus 661 ---------iayv~Q~~wi~~-~TireNIlfg~~~--~~~~-y~~v~~~c~L~~dl~~l~~gd~t~IGe~g~~LSGGQkq 727 (1333)
++|+||++-++. .|++||+.++... +++. .+++.+...+...+.. .......+|||||||
T Consensus 74 ~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~LSGG~~Q 146 (240)
T d1ji0a_ 74 PAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKE-------RLKQLGGTLSGGEQQ 146 (240)
T ss_dssp CHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHT-------TTTSBSSSSCHHHHH
T ss_pred CHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCHHH-------HHHCCHHHCCHHHHH
T ss_conf 0888887423556765545776369999998887327888999999999987417688-------875854338999999
Q ss_pred HHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH-CCCEEEEEECCEEEECCCHHHH
Q ss_conf 999999981499899981878797999999999999988719986999547600461-0898999829869882583788
Q 000720 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDL 806 (1333)
Q Consensus 728 Ri~lARAly~~~~i~llDdp~salD~~~~~~i~~~~~~~~l~~ktvilvtH~~~~l~-~~d~i~~l~~G~i~~~G~~~~l 806 (1333)
|+++|||+..+|++++|||||++||+.....+++....-..+++|++++||+++.+. .||+|++|++|+|++.|+++|+
T Consensus 147 rv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el 226 (240)
T d1ji0a_ 147 MLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASEL 226 (240)
T ss_dssp HHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHH
T ss_pred HHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHH
T ss_conf 99999999829987400398867999999999999999996899899995889999996999999989999998489998
Q ss_pred HHH
Q ss_conf 841
Q 000720 807 IAD 809 (1333)
Q Consensus 807 ~~~ 809 (1333)
.++
T Consensus 227 ~~~ 229 (240)
T d1ji0a_ 227 LDN 229 (240)
T ss_dssp HTC
T ss_pred HCC
T ss_conf 429
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=3.9e-36 Score=286.70 Aligned_cols=202 Identities=23% Similarity=0.299 Sum_probs=164.2
Q ss_pred CEEEEEEEEECCCCCCCCCCCCCCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCE--------
Q ss_conf 089832289707865556788633237-76751890999987899994689999848975799857999794--------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-------- 660 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~v~i~G~~GsGKStLl~~ilge~~~~~G~vi~~~g~-------- 660 (1333)
-++++|.+.+|+. ...|+| ||++++||+++++||||||||||+++|.|.+++.+|++ .++|+
T Consensus 4 iL~v~nlsk~yg~--------~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I-~~~g~~i~~~~~~ 74 (254)
T d1g6ha_ 4 ILRTENIVKYFGE--------FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV-YFENKDITNKEPA 74 (254)
T ss_dssp EEEEEEEEEEETT--------EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE-EETTEECTTCCHH
T ss_pred EEEEEEEEEEECC--------EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE-EECCEECCCHHHH
T ss_conf 6999778999799--------688712179988997999999999849999999977976887379-9999966405699
Q ss_pred ------EEEECCCCCCC-CCCHHHHHCCCCCC-----------------CHHHHHHHHHHCCCCHHHHHHCCCCCCCCCC
Q ss_conf ------79980788788-88788996039767-----------------8778999999801213787520799641378
Q 000720 661 ------KAYVPQSSWIQ-TGTIRENILFGKDM-----------------RQSFYEEVLEGCALNQDIEMWADGDLSVVGE 716 (1333)
Q Consensus 661 ------iayv~Q~~wi~-~~TireNIlfg~~~-----------------~~~~y~~v~~~c~L~~dl~~l~~gd~t~IGe 716 (1333)
++|++|+|-++ +.|+.||+.+|... +++..+++.+.. +.+ |.......
T Consensus 75 ~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~-----~l~~~~~~ 146 (254)
T d1g6ha_ 75 ELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKIL---EFL-----KLSHLYDR 146 (254)
T ss_dssp HHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHH---HHT-----TCGGGTTS
T ss_pred HHHHHCCCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHH---HHC-----CCCHHCCC
T ss_conf 9998338725776424788742321430133303450456654213532899999999998---761-----96302059
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH-CCCEEEEEECC
Q ss_conf 88978968999999999981499899981878797999999999999988719986999547600461-08989998298
Q 000720 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDG 795 (1333)
Q Consensus 717 ~g~~LSGGQkqRi~lARAly~~~~i~llDdp~salD~~~~~~i~~~~~~~~l~~ktvilvtH~~~~l~-~~d~i~~l~~G 795 (1333)
...+||||||||+++|||+..+|++++|||||++||+.....+++....-..+++|++++||+++.+. .||+|++|++|
T Consensus 147 ~~~~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G 226 (254)
T d1g6ha_ 147 KAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNG 226 (254)
T ss_dssp BGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETT
T ss_pred CHHHCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECC
T ss_conf 53569918888999999997592723243976569999999999999999978998999947699999869999999699
Q ss_pred EEEECCCHHHHHH
Q ss_conf 6988258378884
Q 000720 796 KIEQSGKYEDLIA 808 (1333)
Q Consensus 796 ~i~~~G~~~~l~~ 808 (1333)
+|+..|+++|+.+
T Consensus 227 ~iv~~g~~~e~~~ 239 (254)
T d1g6ha_ 227 QIIAEGRGEEEIK 239 (254)
T ss_dssp EEEEEEESHHHHH
T ss_pred EEEEEECHHHHHH
T ss_conf 8999966899865
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.1e-35 Score=283.35 Aligned_cols=200 Identities=23% Similarity=0.282 Sum_probs=165.6
Q ss_pred CCEEEEEEEEECCCCCCCCCCCCCCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECC--------
Q ss_conf 4089832289707865556788633237-7675189099998789999468999984897579985799979--------
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~v~i~G~~GsGKStLl~~ilge~~~~~G~vi~~~g-------- 659 (1333)
++|+++|.+.+|... .+|+| ||++++|++++++||||||||||+++|.|.++|.+|++ .++|
T Consensus 1 gaI~v~nl~k~yg~~--------~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i-~i~G~~i~~~~~ 71 (238)
T d1vpla_ 1 GAVVVKDLRKRIGKK--------EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIV-TVFGKNVVEEPH 71 (238)
T ss_dssp CCEEEEEEEEEETTE--------EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEE-EETTEETTTCHH
T ss_pred CCEEEEEEEEEECCE--------EEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE-EECCEECCCCHH
T ss_conf 978999589999999--------99806256884897999999999999999999966988788879-998672446839
Q ss_pred ----EEEEECCCCCCC-CCCHHHHHCCCCCC---CHHHH----HHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHH
Q ss_conf ----479980788788-88788996039767---87789----9999980121378752079964137888978968999
Q 000720 660 ----KKAYVPQSSWIQ-TGTIRENILFGKDM---RQSFY----EEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (1333)
Q Consensus 660 ----~iayv~Q~~wi~-~~TireNIlfg~~~---~~~~y----~~v~~~c~L~~dl~~l~~gd~t~IGe~g~~LSGGQkq 727 (1333)
.++|+||++.++ +.|++||+.|...+ ++... +++++.+.| ......+..+|||||||
T Consensus 72 ~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~lSgG~~q 140 (238)
T d1vpla_ 72 EVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGL-----------GEKIKDRVSTYSKGMVR 140 (238)
T ss_dssp HHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC-----------GGGGGSBGGGCCHHHHH
T ss_pred HHHHHEEEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC-----------HHHHHHHHHHCCHHHHH
T ss_conf 8872186750015468786677888989986179989999999999986797-----------88885045337998989
Q ss_pred HHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEECCCHHHHHC-CCEEEEEECCEEEECCCHHH
Q ss_conf 9999999814998999818787979999999999999887-199869995476004610-89899982986988258378
Q 000720 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYED 805 (1333)
Q Consensus 728 Ri~lARAly~~~~i~llDdp~salD~~~~~~i~~~~~~~~-l~~ktvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~ 805 (1333)
|+++|||+.++|++++|||||++||+.....+.+ .+..+ .+++|+|++||+++.+.. ||+|++|++|+|...|++++
T Consensus 141 rv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~-~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~e 219 (238)
T d1vpla_ 141 KLLIARALMVNPRLAILDEPTSGLDVLNAREVRK-ILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEE 219 (238)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHH
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHH
T ss_conf 9999999865999887337988979899999999-999999659989999598999999699999998999999928999
Q ss_pred HHHH
Q ss_conf 8841
Q 000720 806 LIAD 809 (1333)
Q Consensus 806 l~~~ 809 (1333)
+.++
T Consensus 220 l~~~ 223 (238)
T d1vpla_ 220 LKER 223 (238)
T ss_dssp HHHH
T ss_pred HHHC
T ss_conf 9865
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=1.7e-35 Score=281.79 Aligned_cols=191 Identities=28% Similarity=0.400 Sum_probs=151.6
Q ss_pred C-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECC-----------EEEEECCCCCCCC-CCHHHHHCCC
Q ss_conf 7-7675189099998789999468999984897579985799979-----------4799807887888-8788996039
Q 000720 616 D-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-----------KKAYVPQSSWIQT-GTIRENILFG 682 (1333)
Q Consensus 616 ~-nl~i~~G~~v~i~G~~GsGKStLl~~ilge~~~~~G~vi~~~g-----------~iayv~Q~~wi~~-~TireNIlfg 682 (1333)
| ||+++ +++++++||||||||||+++|.|.++|++|++ .++| .++||+|+|-++. .||+||+.||
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I-~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~~ 94 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEV-RLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYG 94 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEE-EETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTT
T ss_pred EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEE-EECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHHHHH
T ss_conf 9999749-97999997999809999999973999896289-999999886998992852252314435220155766653
Q ss_pred CCC-CHHH-HHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf 767-8778-99999980121378752079964137888978968999999999981499899981878797999999999
Q 000720 683 KDM-RQSF-YEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLF 760 (1333)
Q Consensus 683 ~~~-~~~~-y~~v~~~c~L~~dl~~l~~gd~t~IGe~g~~LSGGQkqRi~lARAly~~~~i~llDdp~salD~~~~~~i~ 760 (1333)
... .+.. -+++.+.+. .+ |...........||||||||++||||+..+|++++|||||++||+++...+.
T Consensus 95 l~~~~~~~~~~~v~~~l~------~~--gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~ 166 (240)
T d2onka1 95 LRNVERVERDRRVREMAE------KL--GIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLM 166 (240)
T ss_dssp CTTSCHHHHHHHHHHHHH------TT--TCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHH------HC--CCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHH
T ss_conf 233677889999999998------63--8375665794448999989999987775167706752865558879999999
Q ss_pred HHHHHHH-H-CCCEEEEECCCHHHHHC-CCEEEEEECCEEEECCCHHHHHHHCCHHHHHH
Q ss_conf 9999887-1-99869995476004610-89899982986988258378884111699999
Q 000720 761 KQCLMGL-L-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817 (1333)
Q Consensus 761 ~~~~~~~-l-~~ktvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~~~ 817 (1333)
+. +..+ . .+.|+|+|||+++.+.. ||+|++|++|+|++.|+.+|+++.++....++
T Consensus 167 ~~-i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~~~~v~~f 225 (240)
T d2onka1 167 EE-LRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEF 225 (240)
T ss_dssp HH-HHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSSHHHH
T ss_pred HH-HHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHCCCCHHHHHH
T ss_conf 99-999987439769998189999999699999998999999906999832998899998
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.7e-31 Score=251.61 Aligned_cols=194 Identities=23% Similarity=0.388 Sum_probs=157.2
Q ss_pred CEEEEEEEEECCCCCCCCCCCCCCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCE--------
Q ss_conf 089832289707865556788633237-76751890999987899994689999848975799857999794--------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-------- 660 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~v~i~G~~GsGKStLl~~ilge~~~~~G~vi~~~g~-------- 660 (1333)
.++++|++. ...|++ ||+|++||+++|+||||||||||+++|.|.. +.+|++ .++|+
T Consensus 3 il~~~dv~~------------~~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I-~~~g~~i~~~~~~ 68 (231)
T d1l7vc_ 3 VMQLQDVAE------------STRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSI-QFAGQPLEAWSAT 68 (231)
T ss_dssp EEEEEEECC------------TTTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEE-EESSSBGGGSCHH
T ss_pred EEEEECCCC------------CCEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEE-EECCEECCCCCHH
T ss_conf 999987415------------71555888899489899999899980999999994887-995599-9999999869989
Q ss_pred -----EEEECCCCCC-CCCCHHHHHCCCCCC--CHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf -----7998078878-888788996039767--87789999998012137875207996413788897896899999999
Q 000720 661 -----KAYVPQSSWI-QTGTIRENILFGKDM--RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732 (1333)
Q Consensus 661 -----iayv~Q~~wi-~~~TireNIlfg~~~--~~~~y~~v~~~c~L~~dl~~l~~gd~t~IGe~g~~LSGGQkqRi~lA 732 (1333)
.+|++|+... +..++.+++.++... ..++.+++++.+.+.+ .++.+..+||||||||+++|
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----------~~~~~~~~LSgG~~Qrv~iA 137 (231)
T d1l7vc_ 69 KLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDD-----------KLGRSTNQLSGGEWQRVRLA 137 (231)
T ss_dssp HHHHHEEEECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTT-----------TTTSBGGGCCHHHHHHHHHH
T ss_pred HHHHHCEEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCHH-----------HHCCCHHHCCHHHHHHHHHH
T ss_conf 9986402451213577442098876410014668999999998659876-----------76768445699889999999
Q ss_pred HHHCC-------CCCEEEEECCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEECCCHHHHH-CCCEEEEEECCEEEECCCH
Q ss_conf 99814-------998999818787979999999999999887-19986999547600461-0898999829869882583
Q 000720 733 RAVYS-------NSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKY 803 (1333)
Q Consensus 733 RAly~-------~~~i~llDdp~salD~~~~~~i~~~~~~~~-l~~ktvilvtH~~~~l~-~~d~i~~l~~G~i~~~G~~ 803 (1333)
||+++ +|++++||||+++||+.....+. +.+..+ .+++|+|++||+++.+. .||+|++|++|++++.|+.
T Consensus 138 ~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~-~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~ 216 (231)
T d1l7vc_ 138 AVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALD-KILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRR 216 (231)
T ss_dssp HHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHH-HHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBH
T ss_pred HHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHH-HHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCH
T ss_conf 99985171338998899971877778989999999-99999986799999996779999997999999979989998899
Q ss_pred HHHHHH
Q ss_conf 788841
Q 000720 804 EDLIAD 809 (1333)
Q Consensus 804 ~~l~~~ 809 (1333)
+|++++
T Consensus 217 ~ev~~~ 222 (231)
T d1l7vc_ 217 EEVLTP 222 (231)
T ss_dssp HHHSCH
T ss_pred HHHHCC
T ss_conf 998188
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.97 E-value=1.1e-30 Score=245.37 Aligned_cols=127 Identities=29% Similarity=0.436 Sum_probs=118.5
Q ss_pred CCCCCEEEEEEEEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHH
Q ss_conf 97560999989998789999742252177509949999879996489999888305589997699969718999948885
Q 000720 1203 PSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLR 1282 (1333)
Q Consensus 1203 p~~G~Ief~nVsf~Y~~~~p~VLk~iSl~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvDI~~i~l~~LR 1282 (1333)
..+|.|+|+||+|+|+++.++||+||||+|++||++||||+||||||||+++|.|+++|++|+|.+||.|+++++.+++|
T Consensus 12 ~~~g~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr 91 (255)
T d2hyda1 12 IKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLR 91 (255)
T ss_dssp CCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHH
T ss_pred CCCCEEEEEEEEEEECCCCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHHHHH
T ss_conf 77887999988999599997606443899839989999889998099999999712786300015399875307888863
Q ss_pred HCCEEECCCCCCCCCCHHHHCCCC-CCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 028076565422345425503999-99999999999996799865446
Q 000720 1283 SRLSIIPQDPMLFQGTVRTNLDPL-EQHSDQEIWEVKISKLLTHKSYQ 1329 (1333)
Q Consensus 1283 s~isiVpQdp~LF~GTIR~NLdp~-~~~sDeeI~~aL~~~~L~~~~~~ 1329 (1333)
+++++|||+|.+|+||||+||..+ ...+|+++++|++.+++.+.+..
T Consensus 92 ~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~ 139 (255)
T d2hyda1 92 NQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMN 139 (255)
T ss_dssp HTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHT
T ss_pred HEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHH
T ss_conf 414565101568998799998515867999999999999697999973
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=1.3e-30 Score=244.95 Aligned_cols=123 Identities=28% Similarity=0.448 Sum_probs=116.1
Q ss_pred CEEEEEEEEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCE
Q ss_conf 09999899987899997422521775099499998799964899998883055899976999697189999488850280
Q 000720 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1333)
Q Consensus 1207 ~Ief~nVsf~Y~~~~p~VLk~iSl~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvDI~~i~l~~LRs~is 1286 (1333)
+|+|+||+|+|+++.++||+||||+|++||++||||+||||||||+++|.|+++|++|+|.|||.||++++.+++|++++
T Consensus 1 eI~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (241)
T d2pmka1 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 80 (241)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred CEEEEEEEEEECCCCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEEE
T ss_conf 92999999990899960374248998499999999999998999999997357888889999999944002465535288
Q ss_pred EECCCCCCCCCCHHHHCCCCC-CCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 765654223454255039999-9999999999996799865446
Q 000720 1287 IIPQDPMLFQGTVRTNLDPLE-QHSDQEIWEVKISKLLTHKSYQ 1329 (1333)
Q Consensus 1287 iVpQdp~LF~GTIR~NLdp~~-~~sDeeI~~aL~~~~L~~~~~~ 1329 (1333)
+|||||.+|+||||+||.... .+++++++++++.+++.+.+..
T Consensus 81 ~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~ 124 (241)
T d2pmka1 81 VVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE 124 (241)
T ss_dssp EECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTT
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 98244655784000352235755438889999999755788876
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.97 E-value=2.2e-29 Score=235.56 Aligned_cols=180 Identities=24% Similarity=0.377 Sum_probs=138.7
Q ss_pred CEEEEEEEEECCCCCCCCCCCCCCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECC--------E
Q ss_conf 089832289707865556788633237-7675189099998789999468999984897579985799979--------4
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------K 660 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~v~i~G~~GsGKStLl~~ilge~~~~~G~vi~~~g--------~ 660 (1333)
.++++|.+++|+ .++|+| ||++++|++++|+||||||||||+++|.|.++|.+|++ .++| +
T Consensus 2 ~lev~~ls~~y~---------~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I-~~~g~~i~~~~~~ 71 (200)
T d1sgwa_ 2 KLEIRDLSVGYD---------KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI-IYNGVPITKVKGK 71 (200)
T ss_dssp EEEEEEEEEESS---------SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEE-EETTEEGGGGGGG
T ss_pred EEEEEEEEEEEC---------CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEE-EECCEEHHHHCCC
T ss_conf 599998999939---------928842088985998999999999719999999966205677889-9998962673670
Q ss_pred EEEECCCCCCC-CCCHHHHHCC-----CCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 79980788788-8878899603-----97678778999999801213787520799641378889789689999999999
Q 000720 661 KAYVPQSSWIQ-TGTIRENILF-----GKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734 (1333)
Q Consensus 661 iayv~Q~~wi~-~~TireNIlf-----g~~~~~~~y~~v~~~c~L~~dl~~l~~gd~t~IGe~g~~LSGGQkqRi~lARA 734 (1333)
++|+||++.++ +-|++||+.+ |...++....+.++...+. + +.++..+||||||||+++|||
T Consensus 72 i~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~---------~---~~~~~~~LSgG~~qrv~ia~a 139 (200)
T d1sgwa_ 72 IFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVL---------D---LKKKLGELSQGTIRRVQLAST 139 (200)
T ss_dssp EEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCC---------C---TTSBGGGSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCC---------C---CCCCCCCCCCCHHHHHHHHHH
T ss_conf 8999501357888289999999997548863799999999874885---------6---301268689718888999998
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEE-EEECCCHHHHHCCCEEEEEEC
Q ss_conf 814998999818787979999999999999887199869-995476004610898999829
Q 000720 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTV-LYTTHQLEFLDAADLVLVMKD 794 (1333)
Q Consensus 735 ly~~~~i~llDdp~salD~~~~~~i~~~~~~~~l~~ktv-ilvtH~~~~l~~~d~i~~l~~ 794 (1333)
++++|++++|||||++||+.+...+++....-..++.++ |..+|+ +..||.+.+|..
T Consensus 140 l~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~---l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 140 LLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE---LSYCDVNENLHK 197 (200)
T ss_dssp TTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSC---CTTSSEEEEGGG
T ss_pred HHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECH---HHHCCHHHHEEE
T ss_conf 8649989998686201699999999999999986799999999162---544161234010
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.96 E-value=1.6e-23 Score=191.22 Aligned_cols=313 Identities=12% Similarity=0.090 Sum_probs=257.1
Q ss_pred HHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7999999999600-0479999999999999997358889874022465-6613---699999999878999999999999
Q 000720 877 WTVYSAFITLVYK-GALVPVILLCQVLFQALQMGSNYWIAWATDEKRK-VSRE---QLIGVFIFLSGGSSFFILGRAVLL 951 (1333)
Q Consensus 877 ~~~y~~y~~~~~~-~~~~~~~ll~~~l~~~~~~~~~~wl~~~~~~~~~-~~~~---~~~~~y~~l~~~~~~~~~~~~~~~ 951 (1333)
|++++++++.... +..+.+.+++.++..+.....++.++..+|+... .+.. .+...++++.++..++.+.+.+..
T Consensus 1 Wk~~krl~~~~~~~k~~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~ 80 (319)
T d3b60a2 1 WQTFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYCI 80 (319)
T ss_dssp CHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 96899999999999999999999999999999999999999999874468778999999999999997645335466544
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999985385541044581126899735697998488999999999999999999999987668999
Q 000720 952 ATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFP 1031 (1333)
Q Consensus 952 ~~~~~~~s~~l~~~l~~~il~~p~sfFd~tp~GrIlnR~s~D~~~id~~l~~~l~~~~~~~~~~i~~iiv~~~~~~~l~l 1031 (1333)
...+.+...++++++++++++.|++||+++++|++++|+++|++.++..+...+...+..++.+++.++++...+|++++
T Consensus 81 ~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l 160 (319)
T d3b60a2 81 SWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSI 160 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHH
T ss_pred HHHHHCCCCCHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 34310001100047777650101111023332211111212121000011111200112334456688888765200210
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999978999999957206289999997603388873152789999999999899899999999999
Q 000720 1032 LFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTME 1111 (1333)
Q Consensus 1032 v~ip~~~~~~~i~~~y~~~~rel~rl~~~~~spi~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~ 1111 (1333)
+++...++...+..++.+..++..+......+...++..|.++|+.+||+|+.|+.+.+++.+..++..+...+......
T Consensus 161 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (319)
T d3b60a2 161 ILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASS 240 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 25668999999887666687787898876445677887776248723531110102456666653135677888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 9999999998999999999987-60588777679999999999999999999999999997754999999942699999
Q 000720 1112 WLCLRINLLFNFAFFLVLIILV-TLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEA 1189 (1333)
Q Consensus 1112 wl~~rl~~l~~~~~~~~~~~~~-~~~~~~~~~g~~gl~l~y~l~l~~~l~~~v~~~~~le~~~~SveRI~~y~~~p~E~ 1189 (1333)
+......++..+...++.+++. ....|.+++|.....+.|...+..++..+.....++++..+|.||+.|++|.|+|+
T Consensus 241 ~~~~~~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~~E~ 319 (319)
T d3b60a2 241 ISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEK 319 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSC
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 4064010000002379999999999809978999999999999999999999999999999999999999996699899
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.96 E-value=1.1e-28 Score=230.32 Aligned_cols=126 Identities=29% Similarity=0.451 Sum_probs=116.8
Q ss_pred CCCCEEEEEEEEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHH
Q ss_conf 75609999899987899997422521775099499998799964899998883055899976999697189999488850
Q 000720 1204 SSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRS 1283 (1333)
Q Consensus 1204 ~~G~Ief~nVsf~Y~~~~p~VLk~iSl~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvDI~~i~l~~LRs 1283 (1333)
..|+|+|+||+|+|+...+++|+|+||+|++||++||||+||||||||+++|.|+++|++|+|.|||.|+++++.+++|+
T Consensus 10 ~~g~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 89 (253)
T d3b60a1 10 ATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRN 89 (253)
T ss_dssp CCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHH
T ss_pred CCEEEEEEEEEEEECCCCCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHH
T ss_conf 83079999889992999976353328998599999999999985999999986216888468987880121110665420
Q ss_pred CCEEECCCCCCCCCCHHHHCCCC--CCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 28076565422345425503999--99999999999996799865446
Q 000720 1284 RLSIIPQDPMLFQGTVRTNLDPL--EQHSDQEIWEVKISKLLTHKSYQ 1329 (1333)
Q Consensus 1284 ~isiVpQdp~LF~GTIR~NLdp~--~~~sDeeI~~aL~~~~L~~~~~~ 1329 (1333)
++++|||||.+|++|+++|+..+ ..++++++++|++.+++.+.+..
T Consensus 90 ~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~ 137 (253)
T d3b60a1 90 QVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINK 137 (253)
T ss_dssp TEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHH
T ss_pred EEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 687995025447862024332057220899999999999817999973
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=99.96 E-value=9.3e-29 Score=230.80 Aligned_cols=122 Identities=27% Similarity=0.459 Sum_probs=113.2
Q ss_pred EEEEEEEEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCEE
Q ss_conf 99998999878999974225217750994999987999648999988830558999769996971899994888502807
Q 000720 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1333)
Q Consensus 1208 Ief~nVsf~Y~~~~p~VLk~iSl~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvDI~~i~l~~LRs~isi 1287 (1333)
|+++||+|+|+++ ++||+||||+|++||++||||+||||||||+++|.|+++|++|+|.|||.|+++++.+++|++|++
T Consensus 2 le~knvsf~Y~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 80 (242)
T d1mv5a_ 2 LSARHVDFAYDDS-EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (242)
T ss_dssp EEEEEEEECSSSS-SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred EEEEEEEEECCCC-CCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHEEE
T ss_conf 7999889987999-841422589985999999999999979999999999609898779889988442467888743679
Q ss_pred ECCCCCCCCCCHHHHCCCC--CCCCHHHHHHHHHHCCCCCCCCCC
Q ss_conf 6565422345425503999--999999999999967998654468
Q 000720 1288 IPQDPMLFQGTVRTNLDPL--EQHSDQEIWEVKISKLLTHKSYQC 1330 (1333)
Q Consensus 1288 VpQdp~LF~GTIR~NLdp~--~~~sDeeI~~aL~~~~L~~~~~~~ 1330 (1333)
|||||.+|+||||+|+... +..+++++|++++.+++.+.....
T Consensus 81 v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (242)
T d1mv5a_ 81 VSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENM 125 (242)
T ss_dssp ECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSS
T ss_pred ECCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 756654578534543012445554235677899999755542037
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=2e-28 Score=228.26 Aligned_cols=126 Identities=23% Similarity=0.376 Sum_probs=114.1
Q ss_pred CCCCCEEEEEEEEEECCC-CCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHH
Q ss_conf 975609999899987899-9974225217750994999987999648999988830558999769996971899994888
Q 000720 1203 PSSGKIELENLLVQYNPT-LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDL 1281 (1333)
Q Consensus 1203 p~~G~Ief~nVsf~Y~~~-~p~VLk~iSl~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvDI~~i~l~~L 1281 (1333)
+.+|.|+|+||+|+|+.. ..++|+|+||+|++||++||||+||||||||+++|.|+++|++|+|+|||.||++++.+++
T Consensus 7 ~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~ 86 (251)
T d1jj7a_ 7 HLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYL 86 (251)
T ss_dssp CCCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHH
T ss_pred CCCCEEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHHH
T ss_conf 65336999998998899999976744389984998999999999849999999861437876899889985311013788
Q ss_pred HHCCEEECCCCCCCCCCHHHHCCCC--CCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 5028076565422345425503999--9999999999999679986544
Q 000720 1282 RSRLSIIPQDPMLFQGTVRTNLDPL--EQHSDQEIWEVKISKLLTHKSY 1328 (1333)
Q Consensus 1282 Rs~isiVpQdp~LF~GTIR~NLdp~--~~~sDeeI~~aL~~~~L~~~~~ 1328 (1333)
|+++++|||+|.+|++|||+|+..+ ...++++++++++++++.+...
T Consensus 87 r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~ 135 (251)
T d1jj7a_ 87 HRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFIS 135 (251)
T ss_dssp HHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 8776540456500276346554542101302788999999998999998
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.94 E-value=1.9e-23 Score=190.60 Aligned_cols=308 Identities=12% Similarity=0.100 Sum_probs=243.0
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCCCH---HHH-----HHHHHHHHHHHHHHHHHH
Q ss_conf 9999999960004799999999999999973588898740224---65661---369-----999999987899999999
Q 000720 879 VYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEK---RKVSR---EQL-----IGVFIFLSGGSSFFILGR 947 (1333)
Q Consensus 879 ~y~~y~~~~~~~~~~~~~ll~~~l~~~~~~~~~~wl~~~~~~~---~~~~~---~~~-----~~~y~~l~~~~~~~~~~~ 947 (1333)
.++.|++. +++.+ ...+++.++..+.....++.++..+|.. ..... ... ...+.++.++..++.+.+
T Consensus 4 rl~~~~k~-~k~~~-~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 81 (323)
T d2hyda2 4 RYLQFVKP-YKYRI-FATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIR 81 (323)
T ss_dssp HHHHHHGG-GHHHH-HHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999-99999-99999999999999999999999999986267742155689999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999998538554104458112689973569799848899999999999999999999998766
Q 000720 948 AVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAW 1027 (1333)
Q Consensus 948 ~~~~~~~~~~~s~~l~~~l~~~il~~p~sfFd~tp~GrIlnR~s~D~~~id~~l~~~l~~~~~~~~~~i~~iiv~~~~~~ 1027 (1333)
.++....+.+...++++++++++++.|++|||++++|++++|+++|+..++..+...+...+..++.+++.++++...+|
T Consensus 82 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~ 161 (323)
T d2hyda2 82 QYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDV 161 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999999855677888876654023321000122211000111133210011134542011146653346544000014
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999999999999997899999995720628999999760338887315278999999999989989999999
Q 000720 1028 QVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNC 1107 (1333)
Q Consensus 1028 ~l~lv~ip~~~~~~~i~~~y~~~~rel~rl~~~~~spi~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~ 1107 (1333)
+++++.++..++...+..++.+..++..+......++..+++.|+++|+.+||+|+.|+++.+++.+..++..+...+..
T Consensus 162 ~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~ 241 (323)
T d2hyda2 162 KLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHT 241 (323)
T ss_dssp TTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCCCHHHHHH
T ss_conf 68889999887777777641233320267789899999978788755970234676411100233022311110156776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999999999999899999999998-760588777679999999999999999999999999997754999999942699
Q 000720 1108 GTMEWLCLRINLLFNFAFFLVLIIL-VTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIP 1186 (1333)
Q Consensus 1108 ~~~~wl~~rl~~l~~~~~~~~~~~~-~~~~~~~~~~g~~gl~l~y~l~l~~~l~~~v~~~~~le~~~~SveRI~~y~~~p 1186 (1333)
....+......++..+....+.+++ .....|.+++|.....+.+...+..++..+...+.++.+..+|.||+.+++|.|
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd~e 321 (323)
T d2hyda2 242 RWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDED 321 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 52000011111012055899999999999849988999999999999999999999999999999999999999997799
Q ss_pred CC
Q ss_conf 99
Q 000720 1187 SE 1188 (1333)
Q Consensus 1187 ~E 1188 (1333)
+|
T Consensus 322 ~e 323 (323)
T d2hyda2 322 YD 323 (323)
T ss_dssp CS
T ss_pred CC
T ss_conf 98
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.93 E-value=2.1e-20 Score=167.59 Aligned_cols=303 Identities=11% Similarity=0.086 Sum_probs=233.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999899999999999999999999999999998705988777235889999999999999999999999999999999
Q 000720 269 IIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIR 348 (1333)
Q Consensus 269 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~g~r 348 (1333)
..+.+|+.++...++.++..++....|++++.+++..-.... ... .+.++..+++..++..++.....+...+.+.+
T Consensus 10 ~~~~~k~~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~--~~~-l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 86 (319)
T d3b60a2 10 TIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTD--RSV-LLWMPLVVIGLMILRGITSYISSYCISWVSGK 86 (319)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTT--HHH-HHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999999999999999999999999999998744687--789-99999999999997645335466544343100
Q ss_pred HHHHHHHHHHHHHHCCCCCC---CCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999973344589---99679999999649999999999-999998999999999999998446889999999
Q 000720 349 VRSALTVLIYKRSMAIKFAG---PSSGIIINMINVDVERIGDFFLY-IHRIWLLPVQVFLALVILYKNLGAAPAFAALFS 424 (1333)
Q Consensus 349 ir~~l~~~Iy~K~L~ls~~~---~~~G~I~Nlms~D~~~i~~~~~~-~~~~w~~plqi~ial~~L~~~lG~~a~l~gl~~ 424 (1333)
+...+...+|+|.++.+... .++|++++.++.|++.+.+.... ........+.++.++++++..-. ..++..++.
T Consensus 87 ~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~li~l~~ 165 (319)
T d3b60a2 87 VVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSW-QLSIILVVL 165 (319)
T ss_dssp HHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TTHHHHHHH
T ss_pred CCCCHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHH
T ss_conf 0110004777765010111102333221111121212100001111120011233445668888876520-021025668
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999998999999999999999999999999999995669999834299999999999999999999999999999999
Q 000720 425 TIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFL 504 (1333)
Q Consensus 425 ~ii~~~~~~~~~~~~~~~~~~~m~~~D~R~~~~~EiL~~Ik~IK~~~wE~~f~~~I~~~R~~E~~~l~~~~~~~a~~~~~ 504 (1333)
+++...+.....++..+.+++..+..++..+...|.++|++++|.+++|+.+.++.++..++..+...+.....+.....
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (319)
T d3b60a2 166 APIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPI 245 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999988766668778789887644567788777624872353111010245666665313567788888777740640
Q ss_pred HHHHHHH--HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9998799--9999999998816987777899999999999999999999999999999999999998623589
Q 000720 505 FWASPTL--VSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQ 575 (1333)
Q Consensus 505 ~~~~p~l--v~~vtF~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~ 575 (1333)
....+.+ +.+..++.+....+.+++|.+++.+.+...+..|+..++..++.+.++++|.+|+.++|+.|++
T Consensus 246 ~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~~E 318 (319)
T d3b60a2 246 IQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQE 318 (319)
T ss_dssp HHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 1000000237999999999980997899999999999999999999999999999999999999999669989
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.92 E-value=4.8e-20 Score=164.84 Aligned_cols=305 Identities=16% Similarity=0.173 Sum_probs=230.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH---H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999989999999999999999999999999999870598877723---5-88999999999999999999999999999
Q 000720 269 IIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSY---H-YGLVLASVFLFAKTVESLTQRQWYFGANR 344 (1333)
Q Consensus 269 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~---~-~g~~l~~~l~~~~~~~~l~~~~~~~~~~~ 344 (1333)
..+.||+.++...++.++..++....|++++.+++.+.+....... . ..+.++.++++..++..+......+...+
T Consensus 8 ~~k~~k~~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (323)
T d2hyda2 8 FVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQW 87 (323)
T ss_dssp HHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999986267742155689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCC---CCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999997334458---99967999999964999999999-999999899999999999999844688999
Q 000720 345 IGIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFA 420 (1333)
Q Consensus 345 ~g~rir~~l~~~Iy~K~L~ls~~---~~~~G~I~Nlms~D~~~i~~~~~-~~~~~w~~plqi~ial~~L~~~lG~~a~l~ 420 (1333)
.+.+++..+...+|+|.++++.. ..++|+++|.++.|++.+.++.. .+...+...+.+++++.+++..-. ..++.
T Consensus 88 ~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~-~l~li 166 (323)
T d2hyda2 88 TSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDV-KLTLA 166 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCT-TTHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHH-HHHHH
T ss_conf 99855677888876654023321000122211000111133210011134542011146653346544000014-68889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999899999999999999999999999999999566999983429999999999999999999999999999
Q 000720 421 ALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSA 500 (1333)
Q Consensus 421 gl~~~ii~~~~~~~~~~~~~~~~~~~m~~~D~R~~~~~EiL~~Ik~IK~~~wE~~f~~~I~~~R~~E~~~l~~~~~~~a~ 500 (1333)
.++..++...+.....++..+..++..+..++..+.+.|.++|+++||.+++|+.+.++..+..++..+...+.....+.
T Consensus 167 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~ 246 (323)
T d2hyda2 167 ALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAY 246 (323)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 99988777777764123332026778989999997878875597023467641110023302231111015677652000
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999998799--999999999881698777789999999999999999999999999999999999999862358
Q 000720 501 IAFLFWASPTL--VSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDN 574 (1333)
Q Consensus 501 ~~~~~~~~p~l--v~~vtF~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e 574 (1333)
..........+ +....++.+....+.+++|.+++.+.++..+..|+..++..+..+.++++|.+||.++|++|+
T Consensus 247 ~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd~e~ 322 (323)
T d2hyda2 247 SFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDY 322 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 0111110120558999999999998499889999999999999999999999999999999999999999977999
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=99.85 E-value=4.4e-21 Score=172.67 Aligned_cols=115 Identities=22% Similarity=0.403 Sum_probs=103.2
Q ss_pred EEEEEEEEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCEE
Q ss_conf 99998999878999974225217750994999987999648999988830558999769996971899994888502807
Q 000720 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1333)
Q Consensus 1208 Ief~nVsf~Y~~~~p~VLk~iSl~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvDI~~i~l~~LRs~isi 1287 (1333)
|+++|++.+|.. .+|+||||+|++||.+||+|++|||||||+++|.++.+|++|+|.+||.||++++.. |+++++
T Consensus 2 i~v~nlsk~y~~---~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig~ 76 (229)
T d3d31a2 2 IEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIAF 76 (229)
T ss_dssp EEEEEEEEECSS---CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCEE
T ss_pred EEEEEEEEEECC---EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH--HHCCEE
T ss_conf 899989999499---788433789879989999989998299999999647688878899956734652165--740561
Q ss_pred ECCCCCCCCC-CHHHHCCC----CCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 6565422345-42550399----9999999999999967998654
Q 000720 1288 IPQDPMLFQG-TVRTNLDP----LEQHSDQEIWEVKISKLLTHKS 1327 (1333)
Q Consensus 1288 VpQdp~LF~G-TIR~NLdp----~~~~sDeeI~~aL~~~~L~~~~ 1327 (1333)
|||+|.||.. |+++|+.. .+...++++.+++++++|.+.-
T Consensus 77 v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 121 (229)
T d3d31a2 77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLL 121 (229)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTT
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHH
T ss_conf 512111174665778888877640553899999999982565557
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=4.4e-21 Score=172.64 Aligned_cols=120 Identities=25% Similarity=0.388 Sum_probs=103.9
Q ss_pred EEEEEEEEEECCCCC--CCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH---HH
Q ss_conf 999989998789999--7422521775099499998799964899998883055899976999697189999488---85
Q 000720 1208 IELENLLVQYNPTLP--MVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD---LR 1282 (1333)
Q Consensus 1208 Ief~nVsf~Y~~~~p--~VLk~iSl~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvDI~~i~l~~---LR 1282 (1333)
|+++|++..|..+.. .||+|+||+|++||.+||+|+||||||||++++.++.+|++|+|.+||.|+...+.++ +|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHHH
T ss_conf 79982799969998148986150578869979999899989888999987588636677328867685208755511554
Q ss_pred HCCEEECCCCCCCCC-CHHHHCCC----CC---CCCHHHHHHHHHHCCCCCCC
Q ss_conf 028076565422345-42550399----99---99999999999967998654
Q 000720 1283 SRLSIIPQDPMLFQG-TVRTNLDP----LE---QHSDQEIWEVKISKLLTHKS 1327 (1333)
Q Consensus 1283 s~isiVpQdp~LF~G-TIR~NLdp----~~---~~sDeeI~~aL~~~~L~~~~ 1327 (1333)
+++++|||+|.||.. |+++|+.. .+ +..++.+.++|++++|.+.-
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~ 134 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKH 134 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTT
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHH
T ss_conf 16643022522279964999999999984999899999999999976990355
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.84 E-value=1.2e-20 Score=169.29 Aligned_cols=119 Identities=22% Similarity=0.315 Sum_probs=102.5
Q ss_pred EEEEEEEEEECCCCC--CCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHH----
Q ss_conf 999989998789999--74225217750994999987999648999988830558999769996971899994888----
Q 000720 1208 IELENLLVQYNPTLP--MVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDL---- 1281 (1333)
Q Consensus 1208 Ief~nVsf~Y~~~~p--~VLk~iSl~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvDI~~i~l~~L---- 1281 (1333)
|+++||+++|+.+.+ .+|+|+||+|++||.+||+|+||||||||++++.++.+|++|+|.+||.||.+++.+++
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHHH
T ss_conf 89990799948998208987133778849979999889999821655750688777766269999985768855512312
Q ss_pred HHCCEEECCCCCCCCC-CHHHHCCC------CCCCCH----HHHHHHHHHCCCCCC
Q ss_conf 5028076565422345-42550399------999999----999999996799865
Q 000720 1282 RSRLSIIPQDPMLFQG-TVRTNLDP------LEQHSD----QEIWEVKISKLLTHK 1326 (1333)
Q Consensus 1282 Rs~isiVpQdp~LF~G-TIR~NLdp------~~~~sD----eeI~~aL~~~~L~~~ 1326 (1333)
|++|++|||+|.||.. |+++|+.. ....+. +++.+.|+.++|.+.
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~ 137 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEER 137 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGG
T ss_pred CCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHH
T ss_conf 55577880412417686688877578887224789999999999998876242345
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.84 E-value=1.1e-20 Score=169.69 Aligned_cols=117 Identities=18% Similarity=0.267 Sum_probs=101.9
Q ss_pred CCEEEEEEEEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCC
Q ss_conf 60999989998789999742252177509949999879996489999888305589997699969718999948885028
Q 000720 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1285 (1333)
Q Consensus 1206 G~Ief~nVsf~Y~~~~p~VLk~iSl~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvDI~~i~l~~LRs~i 1285 (1333)
..|+++|++.+|.. ..+|+|+||+|++||.+||+|++|||||||++++.|++.|++|+|.+||.|+++++.+ |++|
T Consensus 5 ~~I~v~nlsk~yg~--~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~i 80 (239)
T d1v43a3 5 VEVKLENLTKRFGN--FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 80 (239)
T ss_dssp CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred CEEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCC--CCEE
T ss_conf 74999879999999--9998130678879989999999998299999999758999878799916413547700--0158
Q ss_pred EEECCCCCCCCC-CHHHHCCCCC---CCCH----HHHHHHHHHCCCCCC
Q ss_conf 076565422345-4255039999---9999----999999996799865
Q 000720 1286 SIIPQDPMLFQG-TVRTNLDPLE---QHSD----QEIWEVKISKLLTHK 1326 (1333)
Q Consensus 1286 siVpQdp~LF~G-TIR~NLdp~~---~~sD----eeI~~aL~~~~L~~~ 1326 (1333)
++|||+|.||.. |+++|+.... ..+. +.+.++|+.++|.+.
T Consensus 81 g~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 129 (239)
T d1v43a3 81 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEEL 129 (239)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGG
T ss_pred EEEEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHH
T ss_conf 9980033534222099999999987399999999999999987598556
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.84 E-value=1.2e-21 Score=176.89 Aligned_cols=120 Identities=19% Similarity=0.309 Sum_probs=104.5
Q ss_pred CEEEEEEEEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCC---HHHHHH
Q ss_conf 09999899987899997422521775099499998799964899998883055899976999697189999---488850
Q 000720 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG---LQDLRS 1283 (1333)
Q Consensus 1207 ~Ief~nVsf~Y~~~~p~VLk~iSl~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvDI~~i~---l~~LRs 1283 (1333)
.|+++||+.+|+.+...+|+|+||+|++||.+||+|+||||||||++++.++..|++|+|.+||.|++..+ +...|+
T Consensus 3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr 82 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (242)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEEEEEEECCCCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHHHC
T ss_conf 89997579998899989980407898799899999899980999999997586888745999999951373111531204
Q ss_pred CCEEECCCCCCCCC-CHHHHCCC-C--CCCC----HHHHHHHHHHCCCCCC
Q ss_conf 28076565422345-42550399-9--9999----9999999996799865
Q 000720 1284 RLSIIPQDPMLFQG-TVRTNLDP-L--EQHS----DQEIWEVKISKLLTHK 1326 (1333)
Q Consensus 1284 ~isiVpQdp~LF~G-TIR~NLdp-~--~~~s----DeeI~~aL~~~~L~~~ 1326 (1333)
++++|||+|.||.. |+++|+.. . ...+ ++.+.++|+.++|.+.
T Consensus 83 ~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~ 133 (242)
T d1oxxk2 83 KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHV 133 (242)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGG
T ss_pred CCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHH
T ss_conf 514773043346666577776655676137999999999999866591766
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.84 E-value=8.5e-21 Score=170.48 Aligned_cols=116 Identities=20% Similarity=0.238 Sum_probs=101.3
Q ss_pred EEEEEEEEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCEE
Q ss_conf 99998999878999974225217750994999987999648999988830558999769996971899994888502807
Q 000720 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1333)
Q Consensus 1208 Ief~nVsf~Y~~~~p~VLk~iSl~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvDI~~i~l~~LRs~isi 1287 (1333)
|+++||+++|.+ ..+|+|+||+|++||.+||+|++|||||||++++.++..|++|+|.+||.||++.+. .|++|++
T Consensus 1 Iev~nv~k~yg~--~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~--~~r~ig~ 76 (232)
T d2awna2 1 VQLQNVTKAWGE--VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPP--AERGVGM 76 (232)
T ss_dssp EEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCG--GGTCEEE
T ss_pred CEEEEEEEEECC--EEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCH--HHCEEEE
T ss_conf 999999999899--999811177886998999998999829999999965878888889999997788864--4432223
Q ss_pred ECCCCCCCCC-CHHHHCCCCC-------CCCHHHHHHHHHHCCCCCCC
Q ss_conf 6565422345-4255039999-------99999999999967998654
Q 000720 1288 IPQDPMLFQG-TVRTNLDPLE-------QHSDQEIWEVKISKLLTHKS 1327 (1333)
Q Consensus 1288 VpQdp~LF~G-TIR~NLdp~~-------~~sDeeI~~aL~~~~L~~~~ 1327 (1333)
|||+|.||.. |+++|+.... +..++.+.++|++++|.+..
T Consensus 77 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~ 124 (232)
T d2awna2 77 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLL 124 (232)
T ss_dssp ECSSCCC---------------------CHHHHHHHHHHHHC------
T ss_pred ECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHH
T ss_conf 433420264333788978999875998899999999999757886566
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.82 E-value=4.1e-21 Score=172.92 Aligned_cols=106 Identities=24% Similarity=0.295 Sum_probs=94.5
Q ss_pred CCCEEEEEEEEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHC
Q ss_conf 56099998999878999974225217750994999987999648999988830558999769996971899994888502
Q 000720 1205 SGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSR 1284 (1333)
Q Consensus 1205 ~G~Ief~nVsf~Y~~~~p~VLk~iSl~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvDI~~i~l~~LRs~ 1284 (1333)
.+.|+|+|+++. +. +||+|+||+|++||++||||++|||||||+++|.|+++|++|+|.+|| +
T Consensus 36 ~~~i~~~~~~~~---g~-pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------------~ 98 (281)
T d1r0wa_ 36 ENNVSFSHLCLV---GN-PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------R 98 (281)
T ss_dssp ----CHHHHHHT---TC-EEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------C
T ss_pred CCCEEEEECCCC---CC-EEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC-------------E
T ss_conf 896799976989---97-677375999859999999989998299999999579747882899999-------------9
Q ss_pred CEEECCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 8076565422345425503999999999999999967998654
Q 000720 1285 LSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVKISKLLTHKS 1327 (1333)
Q Consensus 1285 isiVpQdp~LF~GTIR~NLdp~~~~sDeeI~~aL~~~~L~~~~ 1327 (1333)
++++||+|.+|+||||+|+.+...+++.+++++++.+++.+..
T Consensus 99 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~i 141 (281)
T d1r0wa_ 99 VSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDI 141 (281)
T ss_dssp EEEECSSCCCCSEEHHHHHTTTSCCCHHHHHHHHHHTTCHHHH
T ss_pred EEEEECCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 9998164302676032142033345605799999997769999
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=99.81 E-value=2.1e-20 Score=167.50 Aligned_cols=118 Identities=26% Similarity=0.394 Sum_probs=101.6
Q ss_pred CEEEEEEEEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCH--------
Q ss_conf 099998999878999974225217750994999987999648999988830558999769996971899994--------
Q 000720 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGL-------- 1278 (1333)
Q Consensus 1207 ~Ief~nVsf~Y~~~~p~VLk~iSl~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvDI~~i~l-------- 1278 (1333)
.|+++|++++|.. . .||+||||+|++||.+||+|++|||||||+++|.++++|++|+|.+||.||...+.
T Consensus 2 ~Lev~nl~k~yg~-~-~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 79 (258)
T d1b0ua_ 2 KLHVIDLHKRYGG-H-EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 79 (258)
T ss_dssp CEEEEEEEEEETT-E-EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred EEEEEEEEEEECC-E-EEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHCCCC
T ss_conf 6999978999899-9-9881506688699799999899982999999997476678997799999933677520000235
Q ss_pred -----HHHHHCCEEECCCCCCCCC-CHHHHCCC----CCCCC----HHHHHHHHHHCCCCCC
Q ss_conf -----8885028076565422345-42550399----99999----9999999996799865
Q 000720 1279 -----QDLRSRLSIIPQDPMLFQG-TVRTNLDP----LEQHS----DQEIWEVKISKLLTHK 1326 (1333)
Q Consensus 1279 -----~~LRs~isiVpQdp~LF~G-TIR~NLdp----~~~~s----DeeI~~aL~~~~L~~~ 1326 (1333)
...|+++++|||+|-+|.. |+++|+.. ....+ ++.+.++|++++|.+.
T Consensus 80 ~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 141 (258)
T d1b0ua_ 80 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDER 141 (258)
T ss_dssp CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHH
T ss_pred CHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHH
T ss_conf 17679997454489983323141101021365657876299989999999999998299524
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=99.81 E-value=1.4e-20 Score=168.90 Aligned_cols=118 Identities=19% Similarity=0.224 Sum_probs=102.0
Q ss_pred CEEEEEEEEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH----HH
Q ss_conf 09999899987899997422521775099499998799964899998883055899976999697189999488----85
Q 000720 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD----LR 1282 (1333)
Q Consensus 1207 ~Ief~nVsf~Y~~~~p~VLk~iSl~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvDI~~i~l~~----LR 1282 (1333)
.|+++||+.+|.. ..+|+|+||+|++||.+||+|++|||||||++++.++.+|++|+|.+||.|+.+.+-+. .|
T Consensus 3 ~i~v~nl~k~yg~--~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~ 80 (240)
T d1g2912 3 GVRLVDVWKVFGE--VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKD 80 (240)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGG
T ss_pred CEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCCCC
T ss_conf 1899869999899--99985606688699899999999980999999996487889898999999803566444245322
Q ss_pred HCCEEECCCCCCCCC-CHHHHCCCC---CCCC----HHHHHHHHHHCCCCCC
Q ss_conf 028076565422345-425503999---9999----9999999996799865
Q 000720 1283 SRLSIIPQDPMLFQG-TVRTNLDPL---EQHS----DQEIWEVKISKLLTHK 1326 (1333)
Q Consensus 1283 s~isiVpQdp~LF~G-TIR~NLdp~---~~~s----DeeI~~aL~~~~L~~~ 1326 (1333)
+++++|||+|.||.. |+++|+... ...+ ++.+.++|+.++|.+.
T Consensus 81 r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~ 132 (240)
T d1g2912 81 RDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTEL 132 (240)
T ss_dssp SSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGG
T ss_pred CCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHH
T ss_conf 5512002212223101166763306877299989999999999987599667
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=99.80 E-value=1.1e-19 Score=162.03 Aligned_cols=119 Identities=19% Similarity=0.323 Sum_probs=102.1
Q ss_pred CCEEEEEEEEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCC
Q ss_conf 60999989998789999742252177509949999879996489999888305589997699969718999948885028
Q 000720 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1285 (1333)
Q Consensus 1206 G~Ief~nVsf~Y~~~~p~VLk~iSl~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvDI~~i~l~~LRs~i 1285 (1333)
|.|+++|++.+|... .||+|+||++++||.+||+|++|||||||+++|.+++.|++|+|.+||.|+.+. .+++|+++
T Consensus 1 gaI~v~nl~k~yg~~--~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~-~~~~~~~i 77 (238)
T d1vpla_ 1 GAVVVKDLRKRIGKK--EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEE-PHEVRKLI 77 (238)
T ss_dssp CCEEEEEEEEEETTE--EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTC-HHHHHTTE
T ss_pred CCEEEEEEEEEECCE--EEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCC-HHHHHHHE
T ss_conf 978999589999999--998062568848979999999999999999999669887888799986724468-39887218
Q ss_pred EEECCCCCCCCC-CHHHHCCCC---CCCCH----HHHHHHHHHCCCCCCC
Q ss_conf 076565422345-425503999---99999----9999999967998654
Q 000720 1286 SIIPQDPMLFQG-TVRTNLDPL---EQHSD----QEIWEVKISKLLTHKS 1327 (1333)
Q Consensus 1286 siVpQdp~LF~G-TIR~NLdp~---~~~sD----eeI~~aL~~~~L~~~~ 1327 (1333)
++|||++.+|.. |+++|+... ...++ +.+.++++.++|.+..
T Consensus 78 ~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 127 (238)
T d1vpla_ 78 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKI 127 (238)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGG
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHH
T ss_conf 67500154687866778889899861799899999999999867978888
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.80 E-value=1.5e-19 Score=161.04 Aligned_cols=119 Identities=22% Similarity=0.258 Sum_probs=101.5
Q ss_pred CEEEEEEEEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHC-C
Q ss_conf 099998999878999974225217750994999987999648999988830558999769996971899994888502-8
Q 000720 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSR-L 1285 (1333)
Q Consensus 1207 ~Ief~nVsf~Y~~~~p~VLk~iSl~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvDI~~i~l~~LRs~-i 1285 (1333)
-++++|++.+|.. . .||+||||++++||.+||+|++|||||||+++|.+++.|++|+|.+||.|++..+.++++++ |
T Consensus 4 iL~v~nlsk~yg~-~-~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi 81 (254)
T d1g6ha_ 4 ILRTENIVKYFGE-F-KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 81 (254)
T ss_dssp EEEEEEEEEEETT-E-EEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred EEEEEEEEEEECC-E-EEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHHCC
T ss_conf 6999778999799-6-8871217998899799999999984999999997797688737999999664056999998338
Q ss_pred EEECCCCCCCCC-CHHHHCCCC----------------CCCC----HHHHHHHHHHCCCCCCC
Q ss_conf 076565422345-425503999----------------9999----99999999967998654
Q 000720 1286 SIIPQDPMLFQG-TVRTNLDPL----------------EQHS----DQEIWEVKISKLLTHKS 1327 (1333)
Q Consensus 1286 siVpQdp~LF~G-TIR~NLdp~----------------~~~s----DeeI~~aL~~~~L~~~~ 1327 (1333)
+++||+|.+|.. |+++|+-.. .... .++..++|+..++.+..
T Consensus 82 ~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 144 (254)
T d1g6ha_ 82 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLY 144 (254)
T ss_dssp EECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGT
T ss_pred CCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHC
T ss_conf 725776424788742321430133303450456654213532899999999998761963020
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=99.77 E-value=7.8e-19 Score=155.64 Aligned_cols=113 Identities=23% Similarity=0.374 Sum_probs=95.0
Q ss_pred CEEEEEEEEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHC-C
Q ss_conf 099998999878999974225217750994999987999648999988830558999769996971899994888502-8
Q 000720 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSR-L 1285 (1333)
Q Consensus 1207 ~Ief~nVsf~Y~~~~p~VLk~iSl~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvDI~~i~l~~LRs~-i 1285 (1333)
-++++|++.+|.. ..||+|+||+|++||.+||+|++|||||||++++.++++|++|+|.+||.|+.+.+.+..++. +
T Consensus 6 ~Lev~~l~k~yg~--~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gi 83 (240)
T d1ji0a_ 6 VLEVQSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI 83 (240)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTE
T ss_pred EEEEEEEEEEECC--EEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHCC
T ss_conf 7999618999899--88883025788899799999999985999999996788888038984244344660888887423
Q ss_pred EEECCCCCCCCC-CHHHHCCCC----CC--CCHHHHHHHHHHC
Q ss_conf 076565422345-425503999----99--9999999999967
Q 000720 1286 SIIPQDPMLFQG-TVRTNLDPL----EQ--HSDQEIWEVKISK 1321 (1333)
Q Consensus 1286 siVpQdp~LF~G-TIR~NLdp~----~~--~sDeeI~~aL~~~ 1321 (1333)
+++||++.+|.. |+++|+... .. ..++++.++++..
T Consensus 84 ~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (240)
T d1ji0a_ 84 ALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLF 126 (240)
T ss_dssp EEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 5567655457763699999988873278889999999999874
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.77 E-value=1.1e-18 Score=154.52 Aligned_cols=112 Identities=25% Similarity=0.399 Sum_probs=100.1
Q ss_pred CEEEEEEEEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCE
Q ss_conf 09999899987899997422521775099499998799964899998883055899976999697189999488850280
Q 000720 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1333)
Q Consensus 1207 ~Ief~nVsf~Y~~~~p~VLk~iSl~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvDI~~i~l~~LRs~is 1286 (1333)
.||++|++++|+ . +||+|+||+|++||.+||+|++|||||||++++.++++|++|+|.+||.|+. .+|.+++
T Consensus 2 ~lev~~ls~~y~--~-~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~-----~~~~~i~ 73 (200)
T d1sgwa_ 2 KLEIRDLSVGYD--K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKIF 73 (200)
T ss_dssp EEEEEEEEEESS--S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGEE
T ss_pred EEEEEEEEEEEC--C-EEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHH-----HHCCCEE
T ss_conf 599998999939--9-2884208898599899999999971999999996620567788999989626-----7367089
Q ss_pred EECCCCCCCCC-CHHHHCC-----CCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 76565422345-4255039-----9999999999999996799865
Q 000720 1287 IIPQDPMLFQG-TVRTNLD-----PLEQHSDQEIWEVKISKLLTHK 1326 (1333)
Q Consensus 1287 iVpQdp~LF~G-TIR~NLd-----p~~~~sDeeI~~aL~~~~L~~~ 1326 (1333)
++||++.++.. |+++|+. ...+.++++++++++..++.+.
T Consensus 74 ~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 119 (200)
T d1sgwa_ 74 FLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL 119 (200)
T ss_dssp EECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCC
T ss_conf 9950135788828999999999754886379999999987488563
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.68 E-value=7.9e-17 Score=140.43 Aligned_cols=112 Identities=22% Similarity=0.391 Sum_probs=91.7
Q ss_pred EEEEEEEEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCEE
Q ss_conf 99998999878999974225217750994999987999648999988830558999769996971899994888502807
Q 000720 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1333)
Q Consensus 1208 Ief~nVsf~Y~~~~p~VLk~iSl~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvDI~~i~l~~LRs~isi 1287 (1333)
+++ ++.-+|.. ..+ |+||++. ||.+||+|++|||||||+++|.|+.+|++|+|.+||.|+.+++.+ |++|++
T Consensus 3 l~v-~~~k~~g~---~~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig~ 74 (240)
T d2onka1 3 LKV-RAEKRLGN---FRL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGF 74 (240)
T ss_dssp EEE-EEEEEETT---EEE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCBC
T ss_pred EEE-EEEEEECC---EEE-EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHH--HCCCEE
T ss_conf 999-99999899---999-9999749-979999979998099999999739998962899999998869989--928522
Q ss_pred ECCCCCCCCC-CHHHHCCC-CCCCC----HHHHHHHHHHCCCCCCC
Q ss_conf 6565422345-42550399-99999----99999999967998654
Q 000720 1288 IPQDPMLFQG-TVRTNLDP-LEQHS----DQEIWEVKISKLLTHKS 1327 (1333)
Q Consensus 1288 VpQdp~LF~G-TIR~NLdp-~~~~s----DeeI~~aL~~~~L~~~~ 1327 (1333)
|||+|.||.. ||++|+.. ....+ ++.+.++|++++|.+.-
T Consensus 75 v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl~~~~ 120 (240)
T d2onka1 75 VPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLL 120 (240)
T ss_dssp CCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTT
T ss_pred ECCCHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHH
T ss_conf 5231443522015576665323367788999999999863837566
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=99.60 E-value=2.2e-15 Score=129.46 Aligned_cols=115 Identities=18% Similarity=0.218 Sum_probs=98.8
Q ss_pred CEEEEEEEEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCE
Q ss_conf 09999899987899997422521775099499998799964899998883055899976999697189999488850280
Q 000720 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1333)
Q Consensus 1207 ~Ief~nVsf~Y~~~~p~VLk~iSl~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvDI~~i~l~~LRs~is 1286 (1333)
-++++||+.+| +|++|||+|++||.+||+|++|||||||+++|.++. |.+|+|.++|.|+...+.+.++...+
T Consensus 3 il~~~dv~~~~------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~ 75 (231)
T d1l7vc_ 3 VMQLQDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRA 75 (231)
T ss_dssp EEEEEEECCTT------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEE
T ss_pred EEEEECCCCCC------EECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHHHHHCE
T ss_conf 99998741571------555888899489899999899980999999994887-99559999999998699899986402
Q ss_pred EECCCCC-CCCCCHHHHCCCC--CCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 7656542-2345425503999--9999999999999679986544
Q 000720 1287 IIPQDPM-LFQGTVRTNLDPL--EQHSDQEIWEVKISKLLTHKSY 1328 (1333)
Q Consensus 1287 iVpQdp~-LF~GTIR~NLdp~--~~~sDeeI~~aL~~~~L~~~~~ 1328 (1333)
+++|+.. .|..++.+|+... .....+.+.++++.++|.+...
T Consensus 76 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 120 (231)
T d1l7vc_ 76 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLG 120 (231)
T ss_dssp EECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTTTTT
T ss_pred EEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHC
T ss_conf 451213577442098876410014668999999998659876767
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.21 E-value=5.5e-13 Score=111.35 Aligned_cols=146 Identities=11% Similarity=0.059 Sum_probs=96.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCEE--EEECC-----------CCCCCCCCHHHHHCCCCCCCHHHHH
Q ss_conf 9999878999946899998489757998579997947--99807-----------8878888788996039767877899
Q 000720 625 KVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK--AYVPQ-----------SSWIQTGTIRENILFGKDMRQSFYE 691 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge~~~~~G~vi~~~g~i--ayv~Q-----------~~wi~~~TireNIlfg~~~~~~~y~ 691 (1333)
+++|+||+|||||||+++|+|++++..|.+ ...+.. .+-.| .+.....+..++..+++
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 72 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGF-WTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGS-------- 72 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEE-EEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETT--------
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCEE-EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_conf 899998999389999999981488886469-98771328888765311233667778875411345544302--------
Q ss_pred HHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC--
Q ss_conf 999980121378752079964137888978968999999999981499899981878797999999999999988719--
Q 000720 692 EVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-- 769 (1333)
Q Consensus 692 ~v~~~c~L~~dl~~l~~gd~t~IGe~g~~LSGGQkqRi~lARAly~~~~i~llDdp~salD~~~~~~i~~~~~~~~l~-- 769 (1333)
..+......+++|+++|.+++++...+|+++++|||....+. .... ...+...++
T Consensus 73 --------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~--~~~~-~~~l~~~l~~~ 129 (178)
T d1ye8a1 73 --------------------YGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELF--SKKF-RDLVRQIMHDP 129 (178)
T ss_dssp --------------------EEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGG--CHHH-HHHHHHHHTCT
T ss_pred --------------------HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHH--HHHH-HHHHHHHHCCC
T ss_conf --------------------303762566532013789999997409974230277731004--5799-99999875057
Q ss_pred CCEEEEECCCHHHHHCCCEEEEEECCEEEECCC
Q ss_conf 986999547600461089899982986988258
Q 000720 770 QKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGK 802 (1333)
Q Consensus 770 ~ktvilvtH~~~~l~~~d~i~~l~~G~i~~~G~ 802 (1333)
++++++++|+....+.+|++..+++|++.+.+.
T Consensus 130 ~~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 130 NVNVVATIPIRDVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp TSEEEEECCSSCCSHHHHHHHTCTTCEEEECCT
T ss_pred CCEEEEEECCHHHHHHHCEEEEEECCEEEEECC
T ss_conf 978999974477898636599871999999899
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.83 E-value=2.5e-07 Score=68.44 Aligned_cols=76 Identities=28% Similarity=0.331 Sum_probs=62.3
Q ss_pred CCCCHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHCCCEEEE--E
Q ss_conf 97896899999999998----14998999818787979999999999999887199869995476004610898999--8
Q 000720 719 INLSGGQKQRIQLARAV----YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLV--M 792 (1333)
Q Consensus 719 ~~LSGGQkqRi~lARAl----y~~~~i~llDdp~salD~~~~~~i~~~~~~~~l~~ktvilvtH~~~~l~~~d~i~~--l 792 (1333)
..+|+|||+...++..+ ...+.++++|||-++||+...+.+.+ .+....++.-+|++||.+.++..+|+++. |
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~-~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~ 296 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKR-LLKENSKHTQFIVITHNKIVMEAADLLHGVTM 296 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHH-HHHHHTTTSEEEEECCCTTGGGGCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHH-HHHHHCCCCEEEEEECCHHHHHHCCCEEEEEE
T ss_conf 10257776677777665565422674455432033579789999999-99985548879999898899973242899999
Q ss_pred ECC
Q ss_conf 298
Q 000720 793 KDG 795 (1333)
Q Consensus 793 ~~G 795 (1333)
++|
T Consensus 297 ~~g 299 (308)
T d1e69a_ 297 VNG 299 (308)
T ss_dssp SSS
T ss_pred ECC
T ss_conf 699
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.38 E-value=2e-06 Score=61.67 Aligned_cols=73 Identities=18% Similarity=0.240 Sum_probs=57.4
Q ss_pred CCCCHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEECCCHHHHHCCCEEEEE
Q ss_conf 97896899999999998----149989998187879799999999999998871-998699954760046108989998
Q 000720 719 INLSGGQKQRIQLARAV----YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLVM 792 (1333)
Q Consensus 719 ~~LSGGQkqRi~lARAl----y~~~~i~llDdp~salD~~~~~~i~~~~~~~~l-~~ktvilvtH~~~~l~~~d~i~~l 792 (1333)
..+|||||.+++||-.+ +.++++++||||.++||+.....+.+. +.... .+.-+|++||+++.+..+|.++.+
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~-l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAY-IRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHH-HHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH-HHHHHCCCCEEEEEECCHHHHHHCCCEEEE
T ss_conf 332230479999999999954799977999688777899999999999-999728998899995878999736617999
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=97.95 E-value=4.7e-07 Score=66.39 Aligned_cols=68 Identities=13% Similarity=0.110 Sum_probs=55.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCEEECCCCCCCCCCHHHHC
Q ss_conf 49999879996489999888305589997699969718999948885028076565422345425503
Q 000720 1236 KKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNL 1303 (1333)
Q Consensus 1236 ekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvDI~~i~l~~LRs~isiVpQdp~LF~GTIR~NL 1303 (1333)
-||+|+|++|||||||++.+.+.++|..|.+.++|.+....+.+.........++.+.++..+...+.
T Consensus 1 ~ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (178)
T d1ye8a1 1 MKIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKK 68 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSS
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98999989993899999999814888864699877132888876531123366777887541134554
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.22 E-value=0.0014 Score=40.21 Aligned_cols=129 Identities=18% Similarity=0.221 Sum_probs=71.5
Q ss_pred CCEEEECCCEEEEECCCCCCHHHHHHHHHCC--CCCCCCCEEEECCEEEEECCCCCCCC-CCHHHHHCCCCCCCHHHHHH
Q ss_conf 7767518909999878999946899998489--75799857999794799807887888-87889960397678778999
Q 000720 616 DKMKIMKGSKVAVCGSVGSGKSSLLSSILGE--IPRISGAAIKVHGKKAYVPQSSWIQT-GTIRENILFGKDMRQSFYEE 692 (1333)
Q Consensus 616 ~nl~i~~G~~v~i~G~~GsGKStLl~~ilge--~~~~~G~vi~~~g~iayv~Q~~wi~~-~TireNIlfg~~~~~~~y~~ 692 (1333)
|++.+.+ +.+.|+|||.|||||+++.+.=- |- ..|. .+...-+-++.--.++. .-..|++.-|... .
T Consensus 29 Ndi~~~~-~~~iiTGpN~~GKSt~lk~i~l~~ilA-q~G~--~vpA~~~~i~~~d~I~~~~~~~d~~~~~~St---F--- 98 (224)
T d1ewqa2 29 NDLEMAH-ELVLITGPNMAGKSTFLRQTALIALLA-QVGS--FVPAEEAHLPLFDGIYTRIGASDDLAGGKST---F--- 98 (224)
T ss_dssp EEEEESS-CEEEEESCSSSSHHHHHHHHHHHHHHH-TTTC--CBSSSEEEECCCSEEEEECCC------CCSH---H---
T ss_pred CEEEECC-CEEEEECCCCCCCCHHHHHHHHHHHHH-HCCC--EEECCCEEEEECCEEEEEECCCCCCCCCCCH---H---
T ss_conf 5588478-679997887345323455658999998-5250--4613751994011699998777602378307---8---
Q ss_pred HHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CC
Q ss_conf 99980121378752079964137888978968999999999981499899981878797999999999999988719-98
Q 000720 693 VLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QK 771 (1333)
Q Consensus 693 v~~~c~L~~dl~~l~~gd~t~IGe~g~~LSGGQkqRi~lARAly~~~~i~llDdp~salD~~~~~~i~~~~~~~~l~-~k 771 (1333)
..+-+|+.-.---..+..+.|+||++.+=|+.-+..+....++.+.+ +.
T Consensus 99 ------------------------------~~el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~ 148 (224)
T d1ewqa2 99 ------------------------------MVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRA 148 (224)
T ss_dssp ------------------------------HHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTC
T ss_pred ------------------------------HHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCC
T ss_conf ------------------------------98678898775028977278554545686233200258888888862376
Q ss_pred EEEEECCCHHHHH
Q ss_conf 6999547600461
Q 000720 772 TVLYTTHQLEFLD 784 (1333)
Q Consensus 772 tvilvtH~~~~l~ 784 (1333)
+++++||..+...
T Consensus 149 ~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 149 YTLFATHYFELTA 161 (224)
T ss_dssp EEEEECCCHHHHT
T ss_pred CEEEEEECHHHHH
T ss_conf 1378652023332
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=97.16 E-value=0.00022 Score=46.24 Aligned_cols=37 Identities=41% Similarity=0.717 Sum_probs=29.3
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEE
Q ss_conf 51890999987899994689999848975799857999
Q 000720 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV 657 (1333)
Q Consensus 620 i~~G~~v~i~G~~GsGKStLl~~ilge~~~~~G~vi~~ 657 (1333)
+..+.-+.|+|++||||||+++++++++++.. .++.+
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~~~~-rivti 199 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEE-RIISI 199 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSCTTC-CEEEE
T ss_pred HHHCCCEEEEEECCCCCHHHHHHHHHHCCCCC-CEEEC
T ss_conf 98378889994035662578999865301456-23311
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.89 E-value=0.003 Score=37.63 Aligned_cols=130 Identities=14% Similarity=0.131 Sum_probs=68.5
Q ss_pred CCCEEEEC-CCEEEEECCCCCCHHHHHHHHHCCCC-CCCCCEEEECCEEEEECCCCCCC-CCCHHHHHCCCCCCCHHHHH
Q ss_conf 37767518-90999987899994689999848975-79985799979479980788788-88788996039767877899
Q 000720 615 TDKMKIMK-GSKVAVCGSVGSGKSSLLSSILGEIP-RISGAAIKVHGKKAYVPQSSWIQ-TGTIRENILFGKDMRQSFYE 691 (1333)
Q Consensus 615 ~~nl~i~~-G~~v~i~G~~GsGKStLl~~ilge~~-~~~G~vi~~~g~iayv~Q~~wi~-~~TireNIlfg~~~~~~~y~ 691 (1333)
.|++.+.+ +....|+|||.|||||+++.+.=-.- -..|. .+..+-+-.+---.|+ .....|++.-|...
T Consensus 32 pNdi~l~~~~~~~iiTGpN~~GKSt~lk~i~l~~~laq~G~--~VpA~~a~~~~~d~I~~~~~~~d~~~~~~S~------ 103 (234)
T d1wb9a2 32 ANPLNLSPQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS--YVPAQKVEIGPIDRIFTRVGAADDLASGRST------ 103 (234)
T ss_dssp CEEEEECSSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC--CBSSSEEEECCCCEEEEEEC-----------------
T ss_pred CEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCC--EEECCCEECCCCHHHEEEECCCCCCCCCHHH------
T ss_conf 40579889953999954673136899998799999987297--6741766613442023487467534365318------
Q ss_pred HHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-C-
Q ss_conf 99998012137875207996413788897896899999999998149989998187879799999999999998871-9-
Q 000720 692 EVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-S- 769 (1333)
Q Consensus 692 ~v~~~c~L~~dl~~l~~gd~t~IGe~g~~LSGGQkqRi~lARAly~~~~i~llDdp~salD~~~~~~i~~~~~~~~l-~- 769 (1333)
=..+-+|+.-.---..+..+.++||++.+=++.-+..+....+..+. +
T Consensus 104 ------------------------------F~~E~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~ 153 (234)
T d1wb9a2 104 ------------------------------FMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKI 153 (234)
T ss_dssp ------------------------------CHHHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTT
T ss_pred ------------------------------HHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf ------------------------------99999999999974546608853222358774566678987645432045
Q ss_pred CCEEEEECCCHHH
Q ss_conf 9869995476004
Q 000720 770 QKTVLYTTHQLEF 782 (1333)
Q Consensus 770 ~ktvilvtH~~~~ 782 (1333)
+..+++.||..+.
T Consensus 154 ~~~~i~tTH~~~l 166 (234)
T d1wb9a2 154 KALTLFATHYFEL 166 (234)
T ss_dssp CCEEEEECSCGGG
T ss_pred CCEEEEECCHHHH
T ss_conf 4428985246877
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=96.77 E-value=0.0027 Score=37.93 Aligned_cols=112 Identities=21% Similarity=0.157 Sum_probs=71.2
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCEEEEECCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 18909999878999946899998489757998579997947998078878888788996039767877899999980121
Q 000720 621 MKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALN 700 (1333)
Q Consensus 621 ~~G~~v~i~G~~GsGKStLl~~ilge~~~~~G~vi~~~g~iayv~Q~~wi~~~TireNIlfg~~~~~~~y~~v~~~c~L~ 700 (1333)
.++.++.++||+||||||.+.+++.+++.....++.+...+-|.- ++
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPiE~~~--~~------------------------------- 202 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDI--DG------------------------------- 202 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCC--SS-------------------------------
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCC--CC-------------------------------
T ss_conf 410548987678777447799986662578746999626743456--78-------------------------------
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH
Q ss_conf 37875207996413788897896899999999998149989998187879799999999999998871998699954760
Q 000720 701 QDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQL 780 (1333)
Q Consensus 701 ~dl~~l~~gd~t~IGe~g~~LSGGQkqRi~lARAly~~~~i~llDdp~salD~~~~~~i~~~~~~~~l~~ktvilvtH~~ 780 (1333)
-.++++.+. .|+.---++..++-+|||+++.+|.- |+.++.. ++.....|+.|+-.-|--
T Consensus 203 --------~~q~~v~~~-----~~~~~~~~l~~~lR~dPDvi~igEiR---d~~ta~~----a~~aa~tGhlV~tTlHa~ 262 (401)
T d1p9ra_ 203 --------IGQTQVNPR-----VDMTFARGLRAILRQDPDVVMVGEIR---DLETAQI----AVQASLTGHLVMSTLHTN 262 (401)
T ss_dssp --------SEEEECBGG-----GTBCHHHHHHHHGGGCCSEEEESCCC---SHHHHHH----HHHHHHTTCEEEEEECCS
T ss_pred --------CCEEEECCC-----CCCCHHHHHHHHHHHCCCEEEECCCC---CHHHHHH----HHHHHHCCCEEEEEECCC
T ss_conf --------870265587-----67799999999984138889845768---7599999----999972498589983367
Q ss_pred HHHHC
Q ss_conf 04610
Q 000720 781 EFLDA 785 (1333)
Q Consensus 781 ~~l~~ 785 (1333)
+-...
T Consensus 263 ~a~~~ 267 (401)
T d1p9ra_ 263 TAVGA 267 (401)
T ss_dssp SSHHH
T ss_pred CHHHH
T ss_conf 66766
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=96.50 E-value=0.022 Score=31.01 Aligned_cols=130 Identities=18% Similarity=0.194 Sum_probs=65.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCEEEEECCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHCCCCHH
Q ss_conf 90999987899994689999848975799857999794799807887888878899603976787789999998012137
Q 000720 623 GSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQD 702 (1333)
Q Consensus 623 G~~v~i~G~~GsGKStLl~~ilge~~~~~G~vi~~~g~iayv~Q~~wi~~~TireNIlfg~~~~~~~y~~v~~~c~L~~d 702 (1333)
|=.++++|+.|+|||||++.++|.-...... .| ++.++.+........ ..
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~~~~~~~-------------~~----~~~~~~~~~~~~~~~-------------~~ 50 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGREAAIVTD-------------IA----GTTRDVLREHIHIDG-------------MP 50 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCS-------------ST----TCCCSCEEEEEEETT-------------EE
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEEEEC-------------CC----CCCCCEEEEEEECCC-------------CE
T ss_conf 9899998999998999999996888667512-------------46----642204765320268-------------23
Q ss_pred HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHH
Q ss_conf 87520799641378889789689999999999814998999818787979999999999999887199869995476004
Q 000720 703 IEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEF 782 (1333)
Q Consensus 703 l~~l~~gd~t~IGe~g~~LSGGQkqRi~lARAly~~~~i~llDdp~salD~~~~~~i~~~~~~~~l~~ktvilvtH~~~~ 782 (1333)
+..++. .|. ...-...++..+..+...+.++|+++++-....-+.....+.+.+.+.....++.+++|.+..+.
T Consensus 51 ~~~~d~-----~g~-~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl 124 (161)
T d2gj8a1 51 LHIIDT-----AGL-REASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADI 124 (161)
T ss_dssp EEEEEC-----CCC-SCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHH
T ss_pred EEECCC-----CCC-CCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCHHHH
T ss_conf 541365-----321-22465202478999999987413320110256542034555444555420141010204654443
Q ss_pred HHCCCE
Q ss_conf 610898
Q 000720 783 LDAADL 788 (1333)
Q Consensus 783 l~~~d~ 788 (1333)
.+....
T Consensus 125 ~~~~~~ 130 (161)
T d2gj8a1 125 TGETLG 130 (161)
T ss_dssp HCCCCE
T ss_pred HHHHHH
T ss_conf 355887
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.47 E-value=0.0014 Score=40.11 Aligned_cols=26 Identities=38% Similarity=0.561 Sum_probs=22.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89099998789999468999984897
Q 000720 622 KGSKVAVCGSVGSGKSSLLSSILGEI 647 (1333)
Q Consensus 622 ~G~~v~i~G~~GsGKStLl~~ilge~ 647 (1333)
.+=.++++|++|+|||||+++++|.-
T Consensus 7 ~~~kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 7 DAIKVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 88889999999999999999997787
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.06 E-value=0.0028 Score=37.79 Aligned_cols=33 Identities=33% Similarity=0.390 Sum_probs=28.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCE
Q ss_conf 890999987899994689999848975799857
Q 000720 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA 654 (1333)
Q Consensus 622 ~G~~v~i~G~~GsGKStLl~~ilge~~~~~G~v 654 (1333)
+|+.++++|++|.|||||+++|+|+.....|.+
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~v 126 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEV 126 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC----
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCC
T ss_conf 698089978898778888773053555010684
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.03 E-value=0.0021 Score=38.73 Aligned_cols=29 Identities=45% Similarity=0.604 Sum_probs=23.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCC
Q ss_conf 99998789999468999984897579985
Q 000720 625 KVAVCGSVGSGKSSLLSSILGEIPRISGA 653 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge~~~~~G~ 653 (1333)
.++|+|++|+|||||+++|+|.-....|.
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~~~~~~ 86 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGNEEEGA 86 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 79998999997899999995888677756
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.93 E-value=0.0035 Score=37.04 Aligned_cols=28 Identities=29% Similarity=0.348 Sum_probs=24.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9949999879996489999888305589
Q 000720 1234 GEKKIGVVGRTGSGKSTLIQALFRVVEP 1261 (1333)
Q Consensus 1234 ~GekVgIVGrTGSGKSTLi~lL~Rl~ep 1261 (1333)
+|++..++|.||.|||||+++|..=.+.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~ 121 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKL 121 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHH
T ss_conf 6980899788987788887730535550
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.87 E-value=0.0022 Score=38.54 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998789999468999984897
Q 000720 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge~ 647 (1333)
.++|+|++|+|||||+++|.|+-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99998999987999999852987
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.79 E-value=0.0028 Score=37.82 Aligned_cols=25 Identities=44% Similarity=0.561 Sum_probs=22.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0999987899994689999848975
Q 000720 624 SKVAVCGSVGSGKSSLLSSILGEIP 648 (1333)
Q Consensus 624 ~~v~i~G~~GsGKStLl~~ilge~~ 648 (1333)
-.++++|++|+|||||+++|+|+-.
T Consensus 33 l~I~LvG~tg~GKSSliN~ilg~~~ 57 (257)
T d1h65a_ 33 LTILVMGKGGVGKSSTVNSIIGERV 57 (257)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 4899989999869999999858984
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=95.60 E-value=0.055 Score=28.00 Aligned_cols=49 Identities=18% Similarity=0.205 Sum_probs=32.4
Q ss_pred CCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCEEEEECC
Q ss_conf 33237-76751890999987899994689999848975799857999794799807
Q 000720 612 IKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQ 666 (1333)
Q Consensus 612 ~~L~~-nl~i~~G~~v~i~G~~GsGKStLl~~ilge~~~~~G~vi~~~g~iayv~Q 666 (1333)
+.|.. .--+.+|+++.|.|++|+|||+|+.-+.--+-...|. ++.|++-
T Consensus 23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~------~v~~~s~ 72 (277)
T d1cr2a_ 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGK------KVGLAML 72 (277)
T ss_dssp TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCC------CEEEEES
T ss_pred HHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCC------CEEEEEE
T ss_conf 6688874697898089999479997999999999726553366------3457640
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=95.53 E-value=0.0032 Score=37.41 Aligned_cols=27 Identities=22% Similarity=0.360 Sum_probs=23.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 999987899994689999848975799
Q 000720 625 KVAVCGSVGSGKSSLLSSILGEIPRIS 651 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge~~~~~ 651 (1333)
.++|+|++|||||||++.|+.++....
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~g 30 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCARG 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 899991899989999999999999779
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.52 E-value=0.0036 Score=37.02 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=23.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89099998789999468999984897
Q 000720 622 KGSKVAVCGSVGSGKSSLLSSILGEI 647 (1333)
Q Consensus 622 ~G~~v~i~G~~GsGKStLl~~ilge~ 647 (1333)
.|++++++|++||||||+.+.+....
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98599998899998899999999995
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.37 E-value=0.006 Score=35.29 Aligned_cols=30 Identities=33% Similarity=0.555 Sum_probs=24.5
Q ss_pred CEEEECCCEEEEECCCCCCHHHHHHHH---HCC
Q ss_conf 767518909999878999946899998---489
Q 000720 617 KMKIMKGSKVAVCGSVGSGKSSLLSSI---LGE 646 (1333)
Q Consensus 617 nl~i~~G~~v~i~G~~GsGKStLl~~i---lge 646 (1333)
++++..+.+++|+|+||||||+++.|| ||.
T Consensus 19 ~i~f~~~~l~~i~G~NGsGKS~ileAi~~~lg~ 51 (427)
T d1w1wa_ 19 KVGFGESNFTSIIGPNGSGKSNMMDAISFVLGV 51 (427)
T ss_dssp EEECTTCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred EEECCCCCEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 975899998999999999889999999998577
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.31 E-value=0.0026 Score=38.05 Aligned_cols=27 Identities=30% Similarity=0.553 Sum_probs=24.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 909999878999946899998489757
Q 000720 623 GSKVAVCGSVGSGKSSLLSSILGEIPR 649 (1333)
Q Consensus 623 G~~v~i~G~~GsGKStLl~~ilge~~~ 649 (1333)
|.+++|+||+||||||+.+.+..+.+.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 749999899999999999999845899
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.25 E-value=0.005 Score=35.89 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999987899994689999848975
Q 000720 625 KVAVCGSVGSGKSSLLSSILGEIP 648 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge~~ 648 (1333)
.++++|+.|+|||||+++|.|+-.
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~~ 25 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKKV 25 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899999999889999999968985
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.20 E-value=0.0044 Score=36.32 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998789999468999984897
Q 000720 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge~ 647 (1333)
-|||+|+.++|||||++++.|.-
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~~ 25 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSAK 25 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69998999987999999996899
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.16 E-value=0.0064 Score=35.07 Aligned_cols=24 Identities=38% Similarity=0.542 Sum_probs=21.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 949999879996489999888305
Q 000720 1235 EKKIGVVGRTGSGKSTLIQALFRV 1258 (1333)
Q Consensus 1235 GekVgIVGrTGSGKSTLi~lL~Rl 1258 (1333)
|=||++||++|+|||||++.|.+-
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 989999899999899999999688
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.02 E-value=0.0043 Score=36.43 Aligned_cols=94 Identities=19% Similarity=0.209 Sum_probs=58.1
Q ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCEEECCCCC----CCCCCHHHHCC
Q ss_conf 17750994999987999648999988830558999769996971899994888502807656542----23454255039
Q 000720 1229 TCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPM----LFQGTVRTNLD 1304 (1333)
Q Consensus 1229 Sl~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvDI~~i~l~~LRs~isiVpQdp~----LF~GTIR~NLd 1304 (1333)
..-++.|..+-|+|+|||||||++++|++..++..=-|.| .|-..+.+..-++.+.+-.+..+ ++...+|.+-|
T Consensus 160 ~~~v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti--Ed~~El~l~~~~~~~~~~~~~~~~~~~ll~~~lR~~pd 237 (323)
T d1g6oa_ 160 KDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI--EDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPD 237 (323)
T ss_dssp HHHHHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE--ESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCS
T ss_pred HHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEC--CCHHHHHCCCCCCCCEECCCCCHHHHHHHHHHHCCCCC
T ss_conf 9999837888999403566257899986530145623311--32265511112454100146542499999997434998
Q ss_pred C--CCCCCHHHHHHHHHHCCCC
Q ss_conf 9--9999999999999967998
Q 000720 1305 P--LEQHSDQEIWEVKISKLLT 1324 (1333)
Q Consensus 1305 p--~~~~sDeeI~~aL~~~~L~ 1324 (1333)
. .++.-+.|.+++++..+-.
T Consensus 238 ~iivgEiR~~ea~~~l~a~~tG 259 (323)
T d1g6oa_ 238 RIILGELRSSEAYDFYNVLCSG 259 (323)
T ss_dssp EEEESCCCSTHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHC
T ss_conf 5457866746599999999816
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.01 E-value=0.0057 Score=35.49 Aligned_cols=28 Identities=36% Similarity=0.573 Sum_probs=25.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8909999878999946899998489757
Q 000720 622 KGSKVAVCGSVGSGKSSLLSSILGEIPR 649 (1333)
Q Consensus 622 ~G~~v~i~G~~GsGKStLl~~ilge~~~ 649 (1333)
.|.+++|+||+|+||+||.+.++-..|.
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p~ 28 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQPL 28 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 9809999999999999999999863986
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=94.99 E-value=0.0052 Score=35.79 Aligned_cols=23 Identities=39% Similarity=0.582 Sum_probs=20.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99987899994689999848975
Q 000720 626 VAVCGSVGSGKSSLLSSILGEIP 648 (1333)
Q Consensus 626 v~i~G~~GsGKStLl~~ilge~~ 648 (1333)
++++|..++|||||++.+.|.-.
T Consensus 4 VaivG~~nvGKSTLin~L~~~~~ 26 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAHP 26 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSCC
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99989999989999999968997
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.96 E-value=0.0063 Score=35.17 Aligned_cols=49 Identities=22% Similarity=0.339 Sum_probs=30.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE----------EECCEECCCCCHHHHHH
Q ss_conf 94999987999648999988830558999769----------99697189999488850
Q 000720 1235 EKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI----------LIDGVDISMIGLQDLRS 1283 (1333)
Q Consensus 1235 GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I----------~IDGvDI~~i~l~~LRs 1283 (1333)
|.-|.|+||||||||||++.|..-++.-...+ ..||+|-.-++.+....
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~tTR~~r~~e~~G~dy~fvs~~~f~~ 60 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQ 60 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCEEECCCHHHHH
T ss_conf 74999989999999999999984589971798860467774446885133012202455
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.96 E-value=0.0085 Score=34.16 Aligned_cols=23 Identities=39% Similarity=0.650 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998789999468999984897
Q 000720 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge~ 647 (1333)
.++++|.+|+|||||++++.|.-
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~~ 29 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQK 29 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999799998999999995898
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=94.94 E-value=0.0048 Score=36.06 Aligned_cols=26 Identities=35% Similarity=0.521 Sum_probs=22.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 90999987899994689999848975
Q 000720 623 GSKVAVCGSVGSGKSSLLSSILGEIP 648 (1333)
Q Consensus 623 G~~v~i~G~~GsGKStLl~~ilge~~ 648 (1333)
.-.++++|++++|||||+++|.|.-.
T Consensus 16 ~~~I~lvG~~NvGKSSL~n~L~~~~~ 41 (188)
T d1puia_ 16 GIEVAFAGRSNAGKSSALNTLTNQKS 41 (188)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC--
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 97899988999989999999858985
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=94.93 E-value=0.086 Score=26.55 Aligned_cols=149 Identities=11% Similarity=0.079 Sum_probs=72.9
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCEEEEECCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHCC
Q ss_conf 75189099998789999468999984897579985799979479980788788887889960397678778999999801
Q 000720 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCA 698 (1333)
Q Consensus 619 ~i~~G~~v~i~G~~GsGKStLl~~ilge~~~~~G~vi~~~g~iayv~Q~~wi~~~TireNIlfg~~~~~~~y~~v~~~c~ 698 (1333)
-+++|.++.|.|+.|||||+|+.-++-......+. +.|++-+ .+ ...+.+ .++.
T Consensus 22 Gi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~-------~~~is~e-----~~------------~~~~~~--~~~~ 75 (242)
T d1tf7a2 22 GFFKDSIILATGATGTGKTLLVSRFVENACANKER-------AILFAYE-----ES------------RAQLLR--NAYS 75 (242)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCC-------EEEEESS-----SC------------HHHHHH--HHHT
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCC-------CCEEECC-----CC------------HHHHHH--HHHH
T ss_conf 98698499999189999999999999999872324-------4112126-----79------------999999--9998
Q ss_pred CCHHHHH-HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCCCEEEEECCCCCC---CHHHHHHHHHHHHHHHH-CCCE
Q ss_conf 2137875-2079964137888978968999999999981-499899981878797---99999999999998871-9986
Q 000720 699 LNQDIEM-WADGDLSVVGERGINLSGGQKQRIQLARAVY-SNSDVYIFDDPFSAV---DAHTGTHLFKQCLMGLL-SQKT 772 (1333)
Q Consensus 699 L~~dl~~-l~~gd~t~IGe~g~~LSGGQkqRi~lARAly-~~~~i~llDdp~sal---D~~~~~~i~~~~~~~~l-~~kt 772 (1333)
+..|.+. ...+.............. +...-.+.+++. .++++.+.|...... +..............+. .+.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~i~~~~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 154 (242)
T d1tf7a2 76 WGMDFEEMERQNLLKIVCAYPESAGL-EDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEIT 154 (242)
T ss_dssp TSCCHHHHHHTTSEEECCCCGGGSCH-HHHHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCE
T ss_pred CCCCHHHHHHCCCEEEEEEECCHHHH-HHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCHHHHHHHHHHHHHHHHHCCCE
T ss_conf 29986998545861799730001017-99999999999840885332204314304899999999999999999986983
Q ss_pred EEEECCCHH----------HHH-CCCEEEEEEC
Q ss_conf 999547600----------461-0898999829
Q 000720 773 VLYTTHQLE----------FLD-AADLVLVMKD 794 (1333)
Q Consensus 773 vilvtH~~~----------~l~-~~d~i~~l~~ 794 (1333)
++++.|.-. .+. .+|-|+.++.
T Consensus 155 ~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~~ 187 (242)
T d1tf7a2 155 GLFTNTSDQFMGAHSITDSHISTITDTIILLQY 187 (242)
T ss_dssp EEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEE
T ss_pred EEEEEEEEEECCCCCCCCCCEEEECCEEEEEEE
T ss_conf 999985675125544577640464216999998
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=94.92 E-value=0.0062 Score=35.21 Aligned_cols=41 Identities=27% Similarity=0.331 Sum_probs=29.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCEEEEECCCCC
Q ss_conf 890999987899994689999848975799857999794799807887
Q 000720 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSW 669 (1333)
Q Consensus 622 ~G~~v~i~G~~GsGKStLl~~ilge~~~~~G~vi~~~g~iayv~Q~~w 669 (1333)
+.-.++|+|+.|+|||||+..+...+... |. ++|.+.=+|-
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~~~~~~-g~------~vavlavDps 93 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGMLLIRE-GL------KVAVIAVDPS 93 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHT-TC------CEEEEEECCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHC-CC------CEEEECCCCC
T ss_conf 83289743899998999999999999756-98------3322037776
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=94.90 E-value=0.0093 Score=33.88 Aligned_cols=23 Identities=43% Similarity=0.618 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998789999468999984897
Q 000720 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge~ 647 (1333)
.++++|+.|+|||||++.++|.-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.86 E-value=0.0025 Score=38.15 Aligned_cols=33 Identities=30% Similarity=0.402 Sum_probs=28.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCE
Q ss_conf 890999987899994689999848975799857
Q 000720 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA 654 (1333)
Q Consensus 622 ~G~~v~i~G~~GsGKStLl~~ilge~~~~~G~v 654 (1333)
+|+.++++|++|.|||||+++|+|+.....|.+
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~v 128 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEI 128 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC---------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCC
T ss_conf 356499987787348789875151767640355
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.83 E-value=0.0069 Score=34.84 Aligned_cols=31 Identities=23% Similarity=0.209 Sum_probs=25.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCE
Q ss_conf 0999987899994689999848975799857
Q 000720 624 SKVAVCGSVGSGKSSLLSSILGEIPRISGAA 654 (1333)
Q Consensus 624 ~~v~i~G~~GsGKStLl~~ilge~~~~~G~v 654 (1333)
+.++|+|..|||||||+..++.++.....++
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v 32 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRV 32 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 0999980999989999999999998679837
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.81 E-value=0.086 Score=26.56 Aligned_cols=47 Identities=30% Similarity=0.545 Sum_probs=33.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC------------CCCCCEEEECCEECCCCCHHH
Q ss_conf 99499998799964899998883055------------899976999697189999488
Q 000720 1234 GEKKIGVVGRTGSGKSTLIQALFRVV------------EPSGGRILIDGVDISMIGLQD 1280 (1333)
Q Consensus 1234 ~GekVgIVGrTGSGKSTLi~lL~Rl~------------ep~~G~I~IDGvDI~~i~l~~ 1280 (1333)
.+=||||+|++|+|||||+++|++-- .+..|.+.++|.++..++...
T Consensus 7 ~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~d~~g 65 (186)
T d1mkya2 7 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAG 65 (186)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCEEECCCCCCCCCCEEEECCCCCEEEEECCCC
T ss_conf 88889999999999999999997787622422565433320012204992346523688
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.76 E-value=0.011 Score=33.40 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999987899994689999848975
Q 000720 625 KVAVCGSVGSGKSSLLSSILGEIP 648 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge~~ 648 (1333)
.++++|+.|+|||||++.++|.-.
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~ 25 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKK 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899999999989999999967775
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.72 E-value=0.0085 Score=34.18 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=21.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 09999878999946899998489757
Q 000720 624 SKVAVCGSVGSGKSSLLSSILGEIPR 649 (1333)
Q Consensus 624 ~~v~i~G~~GsGKStLl~~ilge~~~ 649 (1333)
-+++|.|++|||||||.+.|...+..
T Consensus 23 ~iIgI~G~~GSGKSTla~~L~~~l~~ 48 (198)
T d1rz3a_ 23 LVLGIDGLSRSGKTTLANQLSQTLRE 48 (198)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 89997898878999999999998363
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=94.69 E-value=0.098 Score=26.13 Aligned_cols=143 Identities=13% Similarity=0.153 Sum_probs=61.7
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCC----CCCCCCEEEECCEEEEECCCCCCCCCCHHHHHC-CCCCCCHHHHHHHH
Q ss_conf 5189099998789999468999984897----579985799979479980788788887889960-39767877899999
Q 000720 620 IMKGSKVAVCGSVGSGKSSLLSSILGEI----PRISGAAIKVHGKKAYVPQSSWIQTGTIRENIL-FGKDMRQSFYEEVL 694 (1333)
Q Consensus 620 i~~G~~v~i~G~~GsGKStLl~~ilge~----~~~~G~vi~~~g~iayv~Q~~wi~~~TireNIl-fg~~~~~~~y~~v~ 694 (1333)
+.+|+++.|+|+.|+|||+|+..+.--+ +...+.. .-.+++.|+.-+... ..+++.+. .+..++...+....
T Consensus 26 ~~pg~~~~i~G~~G~GKS~l~l~la~~ia~g~~~~~~~~-~~~~~vl~~~~E~~~--~~~~~Rl~~~~~~~~~~~~~~~~ 102 (274)
T d1nlfa_ 26 MVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGE-LPTGPVIYLPAEDPP--TAIHHRLHALGAHLSAEERQAVA 102 (274)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCC-CCCCCEEEEESSSCH--HHHHHHHHHHHTTSCHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCC-CCCCCEEEEECCCHH--HHHHHHHHHHHHCCCHHHHHCCC
T ss_conf 558958999928999899999999999976997211123-578736898512349--99999999986236866653123
Q ss_pred HHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC-----CHHHHHHHHHHHHHHH-H
Q ss_conf 980121378752079964137888978968999999999981499899981878797-----9999999999999887-1
Q 000720 695 EGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAV-----DAHTGTHLFKQCLMGL-L 768 (1333)
Q Consensus 695 ~~c~L~~dl~~l~~gd~t~IGe~g~~LSGGQkqRi~lARAly~~~~i~llDdp~sal-----D~~~~~~i~~~~~~~~-l 768 (1333)
... ...+ ..+....... ....-.+ .....+++++++|-..... |......++.....-. .
T Consensus 103 ~~~------~~~~-----~~~~~~~~~~--~~~~~~~-~~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~ 168 (274)
T d1nlfa_ 103 DGL------LIQP-----LIGSLPNIMA--PEWFDGL-KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAAD 168 (274)
T ss_dssp HHE------EECC-----CTTSCCCTTS--HHHHHHH-HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHH
T ss_pred CCC------EECC-----CCCCCCHHHH--HHHHHHH-HHHCCCCCEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 332------3214-----5674203578--9999998-875267658962813542266523225689999887777644
Q ss_pred CCCEEEEECCC
Q ss_conf 99869995476
Q 000720 769 SQKTVLYTTHQ 779 (1333)
Q Consensus 769 ~~ktvilvtH~ 779 (1333)
.+.+++++.|.
T Consensus 169 ~~~~vi~v~H~ 179 (274)
T d1nlfa_ 169 TGCSIVFLHHA 179 (274)
T ss_dssp HCCEEEEEEEC
T ss_pred CCCCEEHHHHC
T ss_conf 79754013100
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.64 E-value=0.0043 Score=36.37 Aligned_cols=88 Identities=18% Similarity=0.132 Sum_probs=49.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCEEECCCCCCCCC-CHHHHCCCCCCCCH-
Q ss_conf 9949999879996489999888305589997699969718999948885028076565422345-42550399999999-
Q 000720 1234 GEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQG-TVRTNLDPLEQHSD- 1311 (1333)
Q Consensus 1234 ~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvDI~~i~l~~LRs~isiVpQdp~LF~G-TIR~NLdp~~~~sD- 1311 (1333)
.|+++.++|.||.|||||+++|..=.....|.|.-. ..-|.|.-|.+--+-+....+.+- =+|+ +.+ ...+.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~----~~rGrHTTt~~~l~~~~gg~iiDTPG~r~-~~l-~~~~~~ 169 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEH----LGRGKHTTRHVELIHTSGGLVADTPGFSS-LEF-TDIEEE 169 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-----------------------CCCCCEEEETTEEEESSCSCSS-CCC-TTCCHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCCCC----CCCCCEEEEEEEEEECCCCEEEECCCCCC-CCC-CCCCCC
T ss_conf 356499987787348789875151767640355533----58971244347888627978997876666-656-555831
Q ss_pred ------HHHHHHHHHCCCCCCC
Q ss_conf ------9999999967998654
Q 000720 1312 ------QEIWEVKISKLLTHKS 1327 (1333)
Q Consensus 1312 ------eeI~~aL~~~~L~~~~ 1327 (1333)
.|+.+..++|...+..
T Consensus 170 ~l~~~F~ei~~~~~~CkF~dC~ 191 (231)
T d1t9ha2 170 ELGYTFPDIREKSSSCKFRGCL 191 (231)
T ss_dssp HHGGGSHHHHHHGGGCSSTTCC
T ss_pred CCHHHHHHHHHHHCCCCCCCCC
T ss_conf 0012035677875789998998
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.62 E-value=0.026 Score=30.47 Aligned_cols=32 Identities=22% Similarity=0.356 Sum_probs=26.5
Q ss_pred CEEEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 76751890999987899994689999848975
Q 000720 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1333)
Q Consensus 617 nl~i~~G~~v~i~G~~GsGKStLl~~ilge~~ 648 (1333)
.+.-++|..+-++|.+||||||+.+.+...+.
T Consensus 18 ~~~~~kg~vIwltGlsGsGKTTia~~L~~~l~ 49 (208)
T d1m7ga_ 18 ELRNQRGLTIWLTGLSASGKSTLAVELEHQLV 49 (208)
T ss_dssp HHHTSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 98589986999989999998999999998877
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.55 E-value=0.0016 Score=39.56 Aligned_cols=31 Identities=19% Similarity=0.273 Sum_probs=26.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCE
Q ss_conf 0999987899994689999848975799857
Q 000720 624 SKVAVCGSVGSGKSSLLSSILGEIPRISGAA 654 (1333)
Q Consensus 624 ~~v~i~G~~GsGKStLl~~ilge~~~~~G~v 654 (1333)
+.+.|+||+|+|||||++.+..++....+.+
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v 32 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPV 32 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTTCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 6999988999719999999999999779979
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.51 E-value=0.011 Score=33.46 Aligned_cols=44 Identities=23% Similarity=0.263 Sum_probs=29.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCEEEEECCCCCC
Q ss_conf 9999878999946899998489757998579997947998078878
Q 000720 625 KVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWI 670 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge~~~~~G~vi~~~g~iayv~Q~~wi 670 (1333)
++||.|++||||||+.+.|...+....... ..-.+..++++.|-
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~~~~~--~~~~~~vi~~D~yy 47 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQNEVDY--RQKQVVILSQDSFY 47 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGGSCG--GGCSEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCHHCCCC--CCCCEEEEECCCCC
T ss_conf 999989997879999999999964101345--78843999346532
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=94.32 E-value=0.013 Score=32.79 Aligned_cols=25 Identities=32% Similarity=0.465 Sum_probs=22.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9099998789999468999984897
Q 000720 623 GSKVAVCGSVGSGKSSLLSSILGEI 647 (1333)
Q Consensus 623 G~~v~i~G~~GsGKStLl~~ilge~ 647 (1333)
-+.++|+|+.|||||||.+.|...+
T Consensus 7 ~K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 7 AKTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 3289998999998999999999984
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=94.28 E-value=0.014 Score=32.46 Aligned_cols=23 Identities=17% Similarity=0.375 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998789999468999984897
Q 000720 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge~ 647 (1333)
-+||+|++.+|||||+++|+|.-
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEEECCCCCHHHHHHHHHHHC
T ss_conf 99999077870999999999743
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.19 E-value=0.0093 Score=33.86 Aligned_cols=43 Identities=16% Similarity=0.333 Sum_probs=30.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCEEEEECCCCCCCC
Q ss_conf 999987899994689999848975799857999794799807887888
Q 000720 625 KVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQT 672 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge~~~~~G~vi~~~g~iayv~Q~~wi~~ 672 (1333)
+++|.|++||||||+.+.|-..+....+. -++..++++.+...
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~~-----~~v~~Is~D~F~~~ 124 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPEH-----RRVELITTDGFLHP 124 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTTC-----CCEEEEEGGGGBCC
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCC-----CCEEEEEEEEEECC
T ss_conf 99996899998768999999997304689-----96599952156898
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.18 E-value=0.0072 Score=34.70 Aligned_cols=57 Identities=19% Similarity=0.141 Sum_probs=33.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCEEECCCCC
Q ss_conf 999987999648999988830558999769996971899994888502807656542
Q 000720 1237 KIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPM 1293 (1333)
Q Consensus 1237 kVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvDI~~i~l~~LRs~isiVpQdp~ 1293 (1333)
.|.|+|+.|+|||||+..+.+.+...++.+.+.+.+........+.....-+.|+..
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRG 59 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCEEETTSSEEEEEEEETTSCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHH
T ss_conf 999988999719999999999999779979999845501222114654123433024
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.14 E-value=0.05 Score=28.31 Aligned_cols=28 Identities=29% Similarity=0.349 Sum_probs=24.2
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 7518909999878999946899998489
Q 000720 619 KIMKGSKVAVCGSVGSGKSSLLSSILGE 646 (1333)
Q Consensus 619 ~i~~G~~v~i~G~~GsGKStLl~~ilge 646 (1333)
-+++|+++.|.|+.|||||+|..-++-.
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~~~~ 59 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTLAVM 59 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9558879999858989889999999998
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.13 E-value=0.014 Score=32.59 Aligned_cols=26 Identities=38% Similarity=0.463 Sum_probs=16.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99499998799964899998883055
Q 000720 1234 GEKKIGVVGRTGSGKSTLIQALFRVV 1259 (1333)
Q Consensus 1234 ~GekVgIVGrTGSGKSTLi~lL~Rl~ 1259 (1333)
.|.-+-|+|||||||+||.+.|..-+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~ 26 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQ 26 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 98099999999999999999998639
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=94.11 E-value=0.024 Score=30.77 Aligned_cols=22 Identities=41% Similarity=0.664 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999878999946899998489
Q 000720 625 KVAVCGSVGSGKSSLLSSILGE 646 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge 646 (1333)
-++|+|++|+|||||..+++..
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~ 25 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYK 25 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999948898099999999997
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=94.05 E-value=0.01 Score=33.53 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=24.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 99998799964899998883055899976999
Q 000720 1237 KIGVVGRTGSGKSTLIQALFRVVEPSGGRILI 1268 (1333)
Q Consensus 1237 kVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~I 1268 (1333)
.++|+|.+|||||||++.|.+-.....-++-+
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~g~~v~v 35 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCARGIRPGL 35 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf 89999189998999999999999977976877
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.05 E-value=0.02 Score=31.28 Aligned_cols=28 Identities=18% Similarity=0.351 Sum_probs=24.5
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 1890999987899994689999848975
Q 000720 621 MKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1333)
Q Consensus 621 ~~G~~v~i~G~~GsGKStLl~~ilge~~ 648 (1333)
++|.++.++|++||||||+.+.+...+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9976999889999999999999999986
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=94.05 E-value=0.012 Score=32.95 Aligned_cols=22 Identities=36% Similarity=0.673 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879996489999888305
Q 000720 1237 KIGVVGRTGSGKSTLIQALFRV 1258 (1333)
Q Consensus 1237 kVgIVGrTGSGKSTLi~lL~Rl 1258 (1333)
+|+|||++|+|||||++.|.+.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHCCC
T ss_conf 9999899998799999985298
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=94.04 E-value=0.021 Score=31.24 Aligned_cols=28 Identities=32% Similarity=0.574 Sum_probs=24.6
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 1890999987899994689999848975
Q 000720 621 MKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1333)
Q Consensus 621 ~~G~~v~i~G~~GsGKStLl~~ilge~~ 648 (1333)
|+|..++|+|+.||||||+.+.|...+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9988899982899988999999999858
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=94.03 E-value=0.023 Score=30.87 Aligned_cols=35 Identities=29% Similarity=0.419 Sum_probs=24.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 9949999879996489999888305589997699969
Q 000720 1234 GEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDG 1270 (1333)
Q Consensus 1234 ~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDG 1270 (1333)
+|+-|.|+|++||||||+...|.+-... --+.+|+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg~--~~~~~~~ 37 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPGV--PKVHFHS 37 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSS--CEEEECT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCC--CEEEECH
T ss_conf 9859999889999889999999999599--9799068
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=93.91 E-value=0.014 Score=32.56 Aligned_cols=28 Identities=25% Similarity=0.310 Sum_probs=23.4
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 1890999987899994689999848975
Q 000720 621 MKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1333)
Q Consensus 621 ~~G~~v~i~G~~GsGKStLl~~ilge~~ 648 (1333)
++.-.++++|+.|+|||||++.+.+.-.
T Consensus 11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~ 38 (186)
T d1f6ba_ 11 KKTGKLVFLGLDNAGKTTLLHMLKDDRL 38 (186)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC--
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 7777899999999898999999967887
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.85 E-value=0.056 Score=27.94 Aligned_cols=22 Identities=45% Similarity=0.602 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999878999946899998489
Q 000720 625 KVAVCGSVGSGKSSLLSSILGE 646 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge 646 (1333)
+++++|..|+|||||++.+++.
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998997989999999709
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=93.85 E-value=0.059 Score=27.79 Aligned_cols=36 Identities=22% Similarity=0.442 Sum_probs=31.2
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCE
Q ss_conf 751890999987899994689999848975799857
Q 000720 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA 654 (1333)
Q Consensus 619 ~i~~G~~v~i~G~~GsGKStLl~~ilge~~~~~G~v 654 (1333)
-++.|.++-+.|+.|||||++...+.....+..|.+
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v 88 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTC 88 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 866754789805876522799999999997079989
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.80 E-value=0.021 Score=31.14 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998789999468999984897
Q 000720 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge~ 647 (1333)
.++|+|+.|+|||||++.+.|.-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999988999999996799
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=93.73 E-value=0.031 Score=29.88 Aligned_cols=59 Identities=12% Similarity=0.189 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH
Q ss_conf 7896899999999998149989998187879799999999999998871998699954760046
Q 000720 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFL 783 (1333)
Q Consensus 720 ~LSGGQkqRi~lARAly~~~~i~llDdp~salD~~~~~~i~~~~~~~~l~~ktvilvtH~~~~l 783 (1333)
.++..|.+ .+-+.+....-++|+==|+.+=-..+-..+.+.. ...++.++-+..-+++.
T Consensus 141 G~~~~~~~--~l~~l~~~~~GliLvtGpTGSGKSTTl~~~l~~~---~~~~~~i~tiEdPiE~~ 199 (401)
T d1p9ra_ 141 GMTAHNHD--NFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQEL---NSSERNILTVEDPIEFD 199 (401)
T ss_dssp CCCHHHHH--HHHHHHTSSSEEEEEECSTTSCHHHHHHHHHHHH---CCTTSCEEEEESSCCSC
T ss_pred CCCHHHHH--HHHHHHHHHHCEEEEECCCCCCCCHHHHHHHHHH---CCCCCEEEEECCCCCCC
T ss_conf 13577789--9999986410548987678777447799986662---57874699962674345
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.72 E-value=0.0055 Score=35.57 Aligned_cols=23 Identities=35% Similarity=0.595 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998789999468999984897
Q 000720 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge~ 647 (1333)
.++++|+.|+|||||++++.|+-
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=93.64 E-value=0.02 Score=31.35 Aligned_cols=24 Identities=25% Similarity=0.374 Sum_probs=20.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 099998789999468999984897
Q 000720 624 SKVAVCGSVGSGKSSLLSSILGEI 647 (1333)
Q Consensus 624 ~~v~i~G~~GsGKStLl~~ilge~ 647 (1333)
+++.++|++||||||+.+.|..+.
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~ 26 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKN 26 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 799998999999999999999957
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.59 E-value=0.029 Score=30.10 Aligned_cols=43 Identities=9% Similarity=0.225 Sum_probs=20.8
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHH
Q ss_conf 814998999818787979999999999999887199869995476004
Q 000720 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEF 782 (1333)
Q Consensus 735 ly~~~~i~llDdp~salD~~~~~~i~~~~~~~~l~~ktvilvtH~~~~ 782 (1333)
-..+.|++++|-. ..... ....+.+.+ . ..++-+++|-+..+.
T Consensus 132 ~~~~~d~~l~~~~-~~~~~-~d~~l~~~l-~--~~~k~~~~V~nK~D~ 174 (400)
T d1tq4a_ 132 KFYEYDFFIIISA-TRFKK-NDIDIAKAI-S--MMKKEFYFVRTKVDS 174 (400)
T ss_dssp TGGGCSEEEEEES-SCCCH-HHHHHHHHH-H--HTTCEEEEEECCHHH
T ss_pred HHHCCEEEEEECC-CCCCH-HHHHHHHHH-H--HCCCCEEEEEECCCC
T ss_conf 3322659999658-88878-899999999-9--769987999708632
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=93.55 E-value=0.025 Score=30.60 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=21.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0999987899994689999848975
Q 000720 624 SKVAVCGSVGSGKSSLLSSILGEIP 648 (1333)
Q Consensus 624 ~~v~i~G~~GsGKStLl~~ilge~~ 648 (1333)
-.++++|..|+|||||++.+.+.-.
T Consensus 6 ~kI~ivG~~~vGKSSLi~~~~~~~~ 30 (169)
T d1upta_ 6 MRILILGLDGAGKTTILYRLQVGEV 30 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 2999999999899999999967987
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=93.52 E-value=0.035 Score=29.54 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998789999468999984897
Q 000720 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge~ 647 (1333)
.++|+|+.|||||||++.++...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89999189983999999999988
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.50 E-value=0.015 Score=32.38 Aligned_cols=37 Identities=30% Similarity=0.347 Sum_probs=27.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCC---CEEEECCEEC
Q ss_conf 999987999648999988830558999---7699969718
Q 000720 1237 KIGVVGRTGSGKSTLIQALFRVVEPSG---GRILIDGVDI 1273 (1333)
Q Consensus 1237 kVgIVGrTGSGKSTLi~lL~Rl~ep~~---G~I~IDGvDI 1273 (1333)
-+||+|++|||||||+..|.+.....+ |.|.-|+.+.
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~~~~ 42 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGG 42 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC---
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCC
T ss_conf 9999809999899999999999986798379998316766
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=93.40 E-value=0.03 Score=29.97 Aligned_cols=27 Identities=22% Similarity=0.461 Sum_probs=16.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 099499998799964899998883055
Q 000720 1233 PGEKKIGVVGRTGSGKSTLIQALFRVV 1259 (1333)
Q Consensus 1233 ~~GekVgIVGrTGSGKSTLi~lL~Rl~ 1259 (1333)
|+|-+|.|.|++||||||+...|..-+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 998889998289998899999999985
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=93.22 E-value=0.031 Score=29.90 Aligned_cols=20 Identities=15% Similarity=0.036 Sum_probs=12.0
Q ss_pred CEEEEECCCCCCCHHHHHHH
Q ss_conf 89998187879799999999
Q 000720 740 DVYIFDDPFSAVDAHTGTHL 759 (1333)
Q Consensus 740 ~i~llDdp~salD~~~~~~i 759 (1333)
-+.++.|+....+++.....
T Consensus 126 ~~v~vvd~~~~~~~~~~~~~ 145 (244)
T d1yrba1 126 LVVYISDPEILKKPNDYCFV 145 (244)
T ss_dssp EEEEEECGGGCCSHHHHHHH
T ss_pred EEEEEECCCCCCCCHHHHHH
T ss_conf 58999636556675047669
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=93.18 E-value=0.082 Score=26.71 Aligned_cols=22 Identities=41% Similarity=0.530 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999878999946899998489
Q 000720 625 KVAVCGSVGSGKSSLLSSILGE 646 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge 646 (1333)
+++++|..|+|||||++.+.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998995889999999729
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.14 E-value=0.03 Score=29.96 Aligned_cols=32 Identities=16% Similarity=0.186 Sum_probs=25.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCCE
Q ss_conf 90999987899994689999848975799857
Q 000720 623 GSKVAVCGSVGSGKSSLLSSILGEIPRISGAA 654 (1333)
Q Consensus 623 G~~v~i~G~~GsGKStLl~~ilge~~~~~G~v 654 (1333)
+++++|.|+.||||||+.+.|...+......+
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~ 32 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNY 32 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 98899989999898999999999998769986
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=93.14 E-value=0.032 Score=29.85 Aligned_cols=10 Identities=30% Similarity=0.474 Sum_probs=7.1
Q ss_pred CCEEEEECCC
Q ss_conf 9869995476
Q 000720 770 QKTVLYTTHQ 779 (1333)
Q Consensus 770 ~ktvilvtH~ 779 (1333)
..++++.||-
T Consensus 148 ~~~ivv~t~~ 157 (257)
T d1h65a_ 148 NKAIVALTHA 157 (257)
T ss_dssp GGEEEEEECC
T ss_pred HCEEEEEECC
T ss_conf 3889999886
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=93.05 E-value=0.033 Score=29.67 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998789999468999984897
Q 000720 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge~ 647 (1333)
+++++|+.|+|||||++.+.+.-
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999996598
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.02 E-value=0.034 Score=29.60 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999987899994689999848975
Q 000720 625 KVAVCGSVGSGKSSLLSSILGEIP 648 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge~~ 648 (1333)
+++++|+.|+|||||++.+.+.-.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~~ 25 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDRL 25 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899999999999999999958998
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.02 E-value=0.074 Score=27.04 Aligned_cols=24 Identities=33% Similarity=0.405 Sum_probs=20.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 909999878999946899998489
Q 000720 623 GSKVAVCGSVGSGKSSLLSSILGE 646 (1333)
Q Consensus 623 G~~v~i~G~~GsGKStLl~~ilge 646 (1333)
.-.++++|..|+|||||++.+.+.
T Consensus 4 ~~Kv~liG~~~vGKTsLl~~~~~~ 27 (167)
T d1xtqa1 4 SRKIAILGYRSVGKSSLTIQFVEG 27 (167)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHC
T ss_conf 338999998992989999999719
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=92.99 E-value=0.042 Score=28.88 Aligned_cols=27 Identities=22% Similarity=0.425 Sum_probs=23.8
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 189099998789999468999984897
Q 000720 621 MKGSKVAVCGSVGSGKSSLLSSILGEI 647 (1333)
Q Consensus 621 ~~G~~v~i~G~~GsGKStLl~~ilge~ 647 (1333)
|+|-.++++||.||||||..+.|...+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 996389998999998899999999986
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.97 E-value=0.032 Score=29.80 Aligned_cols=26 Identities=12% Similarity=0.181 Sum_probs=22.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 09999878999946899998489757
Q 000720 624 SKVAVCGSVGSGKSSLLSSILGEIPR 649 (1333)
Q Consensus 624 ~~v~i~G~~GsGKStLl~~ilge~~~ 649 (1333)
.+++++|..||||||+.+.|...+..
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l~~ 28 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYLNF 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 89999899999999999999999974
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=92.93 E-value=0.19 Score=23.86 Aligned_cols=99 Identities=22% Similarity=0.320 Sum_probs=55.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCEEEEECCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHH
Q ss_conf 99987899994689999848975799857999794799807887888878899603976787789999998012137875
Q 000720 626 VAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEM 705 (1333)
Q Consensus 626 v~i~G~~GsGKStLl~~ilge~~~~~G~vi~~~g~iayv~Q~~wi~~~TireNIlfg~~~~~~~y~~v~~~c~L~~dl~~ 705 (1333)
+.|.|++|||||-|++++..+.....-. +.|++- .+.. ..+.+.+
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~~~~~~~~-------~~~~~~---------~~~~--------~~~~~~~----------- 83 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNEAKKRGYR-------VIYSSA---------DDFA--------QAMVEHL----------- 83 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHHTTCC-------EEEEEH---------HHHH--------HHHHHHH-----------
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCC-------EEEECH---------HHHH--------HHHHHHH-----------
T ss_conf 7998889983999999999874467650-------488443---------7879--------9999998-----------
Q ss_pred HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCC-CCHHHHHHHHHHHHHH-HHCCCEEEEECCC
Q ss_conf 207996413788897896899999999998149989998187879-7999999999999988-7199869995476
Q 000720 706 WADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSA-VDAHTGTHLFKQCLMG-LLSQKTVLYTTHQ 779 (1333)
Q Consensus 706 l~~gd~t~IGe~g~~LSGGQkqRi~lARAly~~~~i~llDdp~sa-lD~~~~~~i~~~~~~~-~l~~ktvilvtH~ 779 (1333)
..+ +.+. .+..+...|++++||.-.- -+...+..+|. .+.. ...++.+|+.+..
T Consensus 84 -~~~---------------~~~~---~~~~~~~~dll~iDDi~~i~~~~~~~~~lf~-lin~~~~~~~~iiits~~ 139 (213)
T d1l8qa2 84 -KKG---------------TINE---FRNMYKSVDLLLLDDVQFLSGKERTQIEFFH-IFNTLYLLEKQIILASDR 139 (213)
T ss_dssp -HHT---------------CHHH---HHHHHHTCSEEEEECGGGGTTCHHHHHHHHH-HHHHHHHTTCEEEEEESS
T ss_pred -HCC---------------CHHH---HHHHHHHCCCHHHHHHHHHCCCHHHHHHHHH-HHHHHHHCCCEEEEECCC
T ss_conf -716---------------6266---7898762130101126550586577889999-999876316638995487
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=92.93 E-value=0.043 Score=28.79 Aligned_cols=26 Identities=19% Similarity=0.438 Sum_probs=23.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 90999987899994689999848975
Q 000720 623 GSKVAVCGSVGSGKSSLLSSILGEIP 648 (1333)
Q Consensus 623 G~~v~i~G~~GsGKStLl~~ilge~~ 648 (1333)
.+++.|+|++||||||+.+.|..++.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.88 E-value=0.041 Score=28.98 Aligned_cols=26 Identities=15% Similarity=0.460 Sum_probs=22.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 90999987899994689999848975
Q 000720 623 GSKVAVCGSVGSGKSSLLSSILGEIP 648 (1333)
Q Consensus 623 G~~v~i~G~~GsGKStLl~~ilge~~ 648 (1333)
.++++|+||+|+||+||.+.++.+.+
T Consensus 3 ~k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 3 RKTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 77199999899999999999997097
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.84 E-value=0.032 Score=29.83 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=17.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999987999648999988830558
Q 000720 1237 KIGVVGRTGSGKSTLIQALFRVVE 1260 (1333)
Q Consensus 1237 kVgIVGrTGSGKSTLi~lL~Rl~e 1260 (1333)
.|||.|++||||||+.+.|.....
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789887899999999999836
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=92.80 E-value=0.035 Score=29.51 Aligned_cols=34 Identities=35% Similarity=0.346 Sum_probs=22.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEE
Q ss_conf 4999987999648999988830558999769996971
Q 000720 1236 KKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVD 1272 (1333)
Q Consensus 1236 ekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvD 1272 (1333)
+-|.|+|.+||||||+++.|.+-. .|...++.-|
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~---~~~~~~~~d~ 36 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKN---PGFYNINRDD 36 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS---TTEEEECHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC---CCCEEECHHH
T ss_conf 799998999999999999999957---9979960399
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.64 E-value=0.038 Score=29.25 Aligned_cols=25 Identities=36% Similarity=0.761 Sum_probs=21.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999878999946899998489757
Q 000720 625 KVAVCGSVGSGKSSLLSSILGEIPR 649 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge~~~ 649 (1333)
.++|+||+||||+||.+.++.+.+.
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~~~~ 27 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 6999899999989999999974886
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=92.61 E-value=0.044 Score=28.79 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=23.7
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 189099998789999468999984897
Q 000720 621 MKGSKVAVCGSVGSGKSSLLSSILGEI 647 (1333)
Q Consensus 621 ~~G~~v~i~G~~GsGKStLl~~ilge~ 647 (1333)
+.+.++.++|++||||||+.+.|...+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=92.58 E-value=0.033 Score=29.73 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998789999468999984897
Q 000720 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge~ 647 (1333)
.++|+|+.||||||+.+.|...+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79898999999899999999997
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=92.50 E-value=0.045 Score=28.72 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=11.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9949999879996489999888305
Q 000720 1234 GEKKIGVVGRTGSGKSTLIQALFRV 1258 (1333)
Q Consensus 1234 ~GekVgIVGrTGSGKSTLi~lL~Rl 1258 (1333)
.+.-+.|+|++||||||+.+.|.+-
T Consensus 5 ~~~iivl~G~~GsGKsT~a~~La~~ 29 (171)
T d1knqa_ 5 DHHIYVLMGVSGSGKSAVASEVAHQ 29 (171)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 8718999899998989999999998
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=92.44 E-value=0.041 Score=29.00 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=22.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 90999987899994689999848975
Q 000720 623 GSKVAVCGSVGSGKSSLLSSILGEIP 648 (1333)
Q Consensus 623 G~~v~i~G~~GsGKStLl~~ilge~~ 648 (1333)
+-.++|+|-..+|||||++++.+--.
T Consensus 2 ~~~~GivG~Pn~GKSTlf~~lt~~~~ 27 (278)
T d1jala1 2 GFKCGIVGLPNVGKSTLFNALTKAGI 27 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 83488889999988999999977997
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=92.44 E-value=0.048 Score=28.45 Aligned_cols=21 Identities=43% Similarity=0.678 Sum_probs=12.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999648999988830
Q 000720 1237 KIGVVGRTGSGKSTLIQALFR 1257 (1333)
Q Consensus 1237 kVgIVGrTGSGKSTLi~lL~R 1257 (1333)
+|+++|++|+|||||++.|.+
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~ 22 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVK 22 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 899999999989999999967
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=92.43 E-value=0.049 Score=28.37 Aligned_cols=27 Identities=26% Similarity=0.255 Sum_probs=18.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 099499998799964899998883055
Q 000720 1233 PGEKKIGVVGRTGSGKSTLIQALFRVV 1259 (1333)
Q Consensus 1233 ~~GekVgIVGrTGSGKSTLi~lL~Rl~ 1259 (1333)
+.|..|-++|.+||||||+..+|.+-.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 997699988999999999999999998
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=92.40 E-value=0.043 Score=28.86 Aligned_cols=21 Identities=19% Similarity=0.427 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987899994689999848
Q 000720 625 KVAVCGSVGSGKSSLLSSILG 645 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilg 645 (1333)
-++|+|++|||||||..+++-
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~ 28 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILY 28 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHH
T ss_conf 999995898998999999999
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=92.38 E-value=0.042 Score=28.91 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=22.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0999987899994689999848975
Q 000720 624 SKVAVCGSVGSGKSSLLSSILGEIP 648 (1333)
Q Consensus 624 ~~v~i~G~~GsGKStLl~~ilge~~ 648 (1333)
.++.|+|+.||||||+.+.|...++
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 0899989999998999999999809
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=92.33 E-value=0.054 Score=28.10 Aligned_cols=22 Identities=41% Similarity=0.693 Sum_probs=16.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879996489999888305
Q 000720 1237 KIGVVGRTGSGKSTLIQALFRV 1258 (1333)
Q Consensus 1237 kVgIVGrTGSGKSTLi~lL~Rl 1258 (1333)
+|++||++|+|||||++.|++-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999999999999999688
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.26 E-value=0.046 Score=28.60 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999987899994689999848975
Q 000720 625 KVAVCGSVGSGKSSLLSSILGEIP 648 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge~~ 648 (1333)
.+|++|...+|||||++++.|--.
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~~~ 25 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLVDV 25 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC---
T ss_pred CEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 176889999989999999978897
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.26 E-value=0.037 Score=29.36 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=18.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 499998799964899998883055
Q 000720 1236 KKIGVVGRTGSGKSTLIQALFRVV 1259 (1333)
Q Consensus 1236 ekVgIVGrTGSGKSTLi~lL~Rl~ 1259 (1333)
.-|-|+|||||||+||++.|.+-.
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEECCCCCCHHHHHHHHHHHC
T ss_conf 719999989999999999999709
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=92.25 E-value=0.043 Score=28.81 Aligned_cols=12 Identities=17% Similarity=0.315 Sum_probs=5.1
Q ss_pred CCCCEEEEECCC
Q ss_conf 499899981878
Q 000720 737 SNSDVYIFDDPF 748 (1333)
Q Consensus 737 ~~~~i~llDdp~ 748 (1333)
..+||++++-..
T Consensus 183 ~~~dIlIvEGi~ 194 (308)
T d1sq5a_ 183 VQPDILILEGLN 194 (308)
T ss_dssp C-CCEEEEECTT
T ss_pred CCCCEEEECCHH
T ss_conf 799989970402
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.24 E-value=0.051 Score=28.28 Aligned_cols=18 Identities=50% Similarity=0.745 Sum_probs=8.0
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 999879996489999888
Q 000720 1238 IGVVGRTGSGKSTLIQAL 1255 (1333)
Q Consensus 1238 VgIVGrTGSGKSTLi~lL 1255 (1333)
|||.|++||||||+.+.|
T Consensus 5 IgI~G~~gSGKSTla~~L 22 (213)
T d1uj2a_ 5 IGVSGGTASGKSSVCAKI 22 (213)
T ss_dssp EEEECSTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
T ss_conf 999899978799999999
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.23 E-value=0.11 Score=25.73 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987899994689999848
Q 000720 625 KVAVCGSVGSGKSSLLSSILG 645 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilg 645 (1333)
.++++|..|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999999799999999973
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=92.20 E-value=0.093 Score=26.28 Aligned_cols=40 Identities=25% Similarity=0.337 Sum_probs=28.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCEEEEECCCC
Q ss_conf 89099998789999468999984897579985799979479980788
Q 000720 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSS 668 (1333)
Q Consensus 622 ~G~~v~i~G~~GsGKStLl~~ilge~~~~~G~vi~~~g~iayv~Q~~ 668 (1333)
++..++++||+|+||||.+.-|...+. ..|. +++.+.=+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~-~~g~------kV~lit~Dt 44 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ-NLGK------KVMFCAGDT 44 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH-TTTC------CEEEECCCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH-HCCC------CEEEEEECC
T ss_conf 977999989999988999999999999-7799------079998136
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.19 E-value=0.031 Score=29.88 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=23.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 890999987899994689999848975
Q 000720 622 KGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1333)
Q Consensus 622 ~G~~v~i~G~~GsGKStLl~~ilge~~ 648 (1333)
+|..+.++|+.||||||+.+.|...+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 996999889999999999999999997
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.04 E-value=0.13 Score=25.25 Aligned_cols=49 Identities=20% Similarity=0.229 Sum_probs=33.2
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCEEEEECCCC
Q ss_conf 75189099998789999468999984897579985799979479980788
Q 000720 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSS 668 (1333)
Q Consensus 619 ~i~~G~~v~i~G~~GsGKStLl~~ilge~~~~~G~vi~~~g~iayv~Q~~ 668 (1333)
-+++|+++.|.|+.|||||+|..-++-........- ...+.+.|+..+.
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~~~~~~~~~~~-~~~~~~~~i~~~~ 78 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIG-GGEGKCLYIDTEG 78 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHTTTTTSCTTTT-CCSCEEEEEESSS
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEECC
T ss_conf 986996999983899988999999999863124312-6896399994023
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=92.01 E-value=0.055 Score=28.03 Aligned_cols=24 Identities=42% Similarity=0.602 Sum_probs=21.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 099998789999468999984897
Q 000720 624 SKVAVCGSVGSGKSSLLSSILGEI 647 (1333)
Q Consensus 624 ~~v~i~G~~GsGKStLl~~ilge~ 647 (1333)
-.++|+|++.+|||||+++|++.-
T Consensus 6 p~IaIiGh~d~GKSTL~~~L~~~~ 29 (227)
T d1g7sa4 6 PIVSVLGHVDHGKTTLLDHIRGSA 29 (227)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHC
T ss_conf 879999699854999999998236
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.01 E-value=0.032 Score=29.76 Aligned_cols=41 Identities=22% Similarity=0.276 Sum_probs=26.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCEEEEECCCCC
Q ss_conf 999987899994689999848975799857999794799807887
Q 000720 625 KVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSW 669 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge~~~~~G~vi~~~g~iayv~Q~~w 669 (1333)
+++|.|+.|||||||...|.-.+....|. .-.++.++.+-+
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L~~~~~~----~~~v~~iS~Ddf 69 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHLMEKYGG----EKSIGYASIDDF 69 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHGG----GSCEEEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHCC----CCCEEEECCCCC
T ss_conf 99837998788999999999999987277----860676356777
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=91.98 E-value=0.049 Score=28.42 Aligned_cols=21 Identities=48% Similarity=0.525 Sum_probs=16.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999648999988830
Q 000720 1237 KIGVVGRTGSGKSTLIQALFR 1257 (1333)
Q Consensus 1237 kVgIVGrTGSGKSTLi~lL~R 1257 (1333)
.|+|||++|+|||||+++|.+
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~ 22 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTG 22 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 899999999889999999968
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=91.95 E-value=0.045 Score=28.70 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=15.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4999987999648999988830558
Q 000720 1236 KKIGVVGRTGSGKSTLIQALFRVVE 1260 (1333)
Q Consensus 1236 ekVgIVGrTGSGKSTLi~lL~Rl~e 1260 (1333)
.-|.|.|.+||||||+.+.|.+...
T Consensus 4 kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 5999989999998999999999728
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.72 E-value=0.064 Score=27.52 Aligned_cols=24 Identities=29% Similarity=0.356 Sum_probs=20.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 099998789999468999984897
Q 000720 624 SKVAVCGSVGSGKSSLLSSILGEI 647 (1333)
Q Consensus 624 ~~v~i~G~~GsGKStLl~~ilge~ 647 (1333)
..++|+|+.|+|||||++.+++.-
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 989999999989899999998099
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.66 E-value=0.05 Score=28.35 Aligned_cols=24 Identities=38% Similarity=0.637 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999987899994689999848975
Q 000720 625 KVAVCGSVGSGKSSLLSSILGEIP 648 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge~~ 648 (1333)
.++|+||+||||+|+.+.++.+.+
T Consensus 2 pIvl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 2 PVVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 199999999999999999997488
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=91.63 E-value=0.066 Score=27.40 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=22.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 09999878999946899998489757
Q 000720 624 SKVAVCGSVGSGKSSLLSSILGEIPR 649 (1333)
Q Consensus 624 ~~v~i~G~~GsGKStLl~~ilge~~~ 649 (1333)
-.++++|+.|+|||||++.+.++...
T Consensus 3 ~ki~ivG~~~~GKTsLi~~l~~~~~~ 28 (165)
T d1ksha_ 3 LRLLMLGLDNAGKTTILKKFNGEDVD 28 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTCCCS
T ss_pred EEEEEECCCCCCHHHHHHHHCCCCCC
T ss_conf 79999999998999999998089987
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.57 E-value=0.087 Score=26.52 Aligned_cols=30 Identities=20% Similarity=0.300 Sum_probs=25.9
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 751890999987899994689999848975
Q 000720 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1333)
Q Consensus 619 ~i~~G~~v~i~G~~GsGKStLl~~ilge~~ 648 (1333)
-+++|+++.|.|+.|||||+|...++....
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~~ 48 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVTCQ 48 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 985997999995899999999999999998
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=91.57 E-value=0.17 Score=24.40 Aligned_cols=40 Identities=20% Similarity=0.307 Sum_probs=32.6
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEC
Q ss_conf 7518909999878999946899998489757998579997
Q 000720 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH 658 (1333)
Q Consensus 619 ~i~~G~~v~i~G~~GsGKStLl~~ilge~~~~~G~vi~~~ 658 (1333)
-+++|.++-+.|+.||||||++..+........|.++.++
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyid 89 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 89 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 9667358998057774789999999999870898799986
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=91.55 E-value=0.071 Score=27.18 Aligned_cols=10 Identities=30% Similarity=0.388 Sum_probs=3.6
Q ss_pred CCCEEEEECC
Q ss_conf 9986999547
Q 000720 769 SQKTVLYTTH 778 (1333)
Q Consensus 769 ~~ktvilvtH 778 (1333)
.++.+++=+|
T Consensus 81 ~~~~vl~d~~ 90 (190)
T d1khta_ 81 KESPVAVDTH 90 (190)
T ss_dssp TTSCEEEECC
T ss_pred CCCEEEECCC
T ss_conf 7996998784
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=91.54 E-value=0.054 Score=28.10 Aligned_cols=21 Identities=29% Similarity=0.563 Sum_probs=18.4
Q ss_pred CEEEEECCCCCCHHHHHHHHH
Q ss_conf 099998789999468999984
Q 000720 624 SKVAVCGSVGSGKSSLLSSIL 644 (1333)
Q Consensus 624 ~~v~i~G~~GsGKStLl~~il 644 (1333)
-++||+|+.||||||+.+.+-
T Consensus 4 ~IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 4 IIIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 899998988778999999999
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=91.52 E-value=0.047 Score=28.51 Aligned_cols=13 Identities=8% Similarity=-0.118 Sum_probs=5.5
Q ss_pred CCCCEEEEECCCC
Q ss_conf 4998999818787
Q 000720 737 SNSDVYIFDDPFS 749 (1333)
Q Consensus 737 ~~~~i~llDdp~s 749 (1333)
......+.|....
T Consensus 71 ~~~~~~iid~~~~ 83 (176)
T d2bdta1 71 LAQNDVVLDYIAF 83 (176)
T ss_dssp HTTCEEEEESCCC
T ss_pred HCCCCCCCCCCCC
T ss_conf 6278852244435
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=91.45 E-value=0.062 Score=27.64 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=18.1
Q ss_pred CEEEEECCCCCCHHHHHHHHH
Q ss_conf 099998789999468999984
Q 000720 624 SKVAVCGSVGSGKSSLLSSIL 644 (1333)
Q Consensus 624 ~~v~i~G~~GsGKStLl~~il 644 (1333)
-++||+|..||||||+.+.+-
T Consensus 3 ~iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 3 YIVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEEECSTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 899988888788999999999
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=91.45 E-value=0.066 Score=27.42 Aligned_cols=29 Identities=38% Similarity=0.545 Sum_probs=23.6
Q ss_pred CEEEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 76751890999987899994689999848975
Q 000720 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1333)
Q Consensus 617 nl~i~~G~~v~i~G~~GsGKStLl~~ilge~~ 648 (1333)
+++.| .++|+|..+||||||+++|+|+--
T Consensus 21 ~~~lP---~ivVvG~~ssGKSSliNaLlG~~~ 49 (306)
T d1jwyb_ 21 PLDLP---QIVVVGSQSSGKSSVLENIVGRDF 49 (306)
T ss_dssp TTCCC---EEEEEECSSSSHHHHHHHHHTSCC
T ss_pred CCCCC---EEEEEECCCCCHHHHHHHHHCCCC
T ss_conf 78888---599981898979999999968997
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.44 E-value=0.061 Score=27.70 Aligned_cols=23 Identities=39% Similarity=0.645 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998789999468999984897
Q 000720 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge~ 647 (1333)
.++|+|..+||||||+++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.38 E-value=0.061 Score=27.67 Aligned_cols=44 Identities=11% Similarity=0.114 Sum_probs=17.1
Q ss_pred CCCEEEEECCCCCC-CHHHHHHHHHHH--HHHHH-CCCEEEEECCCHH
Q ss_conf 99899981878797-999999999999--98871-9986999547600
Q 000720 738 NSDVYIFDDPFSAV-DAHTGTHLFKQC--LMGLL-SQKTVLYTTHQLE 781 (1333)
Q Consensus 738 ~~~i~llDdp~sal-D~~~~~~i~~~~--~~~~l-~~ktvilvtH~~~ 781 (1333)
+.-+.+.|...... ...+..++.+.. ..... ++.-++++-|..+
T Consensus 75 ~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D 122 (209)
T d1nrjb_ 75 KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSE 122 (209)
T ss_dssp EEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTT
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC
T ss_conf 456248997346233999999999999999998743698699998003
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.36 E-value=0.17 Score=24.36 Aligned_cols=40 Identities=18% Similarity=0.303 Sum_probs=31.4
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEE
Q ss_conf 6751890999987899994689999848975799857999
Q 000720 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV 657 (1333)
Q Consensus 618 l~i~~G~~v~i~G~~GsGKStLl~~ilge~~~~~G~vi~~ 657 (1333)
=-++.|.++.+.|+.|||||+++..+........|.++.+
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyI 94 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFI 94 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 9866633699964887488999999999875489889999
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.29 E-value=0.29 Score=22.50 Aligned_cols=110 Identities=20% Similarity=0.273 Sum_probs=62.6
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCEEEEECCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHCC
Q ss_conf 75189099998789999468999984897579985799979479980788788887889960397678778999999801
Q 000720 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCA 698 (1333)
Q Consensus 619 ~i~~G~~v~i~G~~GsGKStLl~~ilge~~~~~G~vi~~~g~iayv~Q~~wi~~~TireNIlfg~~~~~~~y~~v~~~c~ 698 (1333)
.+++..-+.+.||.|+|||+|.+++.++... .+ -++. .
T Consensus 37 g~~~~~giLL~Gp~GtGKT~l~~ala~~~~~---~~-------~~~~------------------------------~-- 74 (265)
T d1r7ra3 37 GMTPSKGVLFYGPPGCGKTLLAKAIANECQA---NF-------ISIK------------------------------G-- 74 (265)
T ss_dssp CCCCCCEEEEBCCTTSSHHHHHHHHHHHTTC---EE-------EEEC------------------------------H--
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHCC---CE-------EEEE------------------------------H--
T ss_conf 9998875788789987630477887877189---47-------9988------------------------------7--
Q ss_pred CCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHH---------HHHHHHHHHHH---H
Q ss_conf 21378752079964137888978968999999999981499899981878797999---------99999999998---8
Q 000720 699 LNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAH---------TGTHLFKQCLM---G 766 (1333)
Q Consensus 699 L~~dl~~l~~gd~t~IGe~g~~LSGGQkqRi~lARAly~~~~i~llDdp~salD~~---------~~~~i~~~~~~---~ 766 (1333)
.++.. +..| ...++-|-.+.+|-...|-|+++||.-.-.... ...++....+. +
T Consensus 75 --~~l~~------~~~~------~~~~~l~~~f~~A~~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~ 140 (265)
T d1r7ra3 75 --PELLT------MWFG------ESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDG 140 (265)
T ss_dssp --HHHHT------SCTT------THHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC-
T ss_pred --HHHHH------CCCC------CHHHHHHHHHHHHHHCCCCCEEHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf --99525------3165------158999999999986398435687546324557876788737999999999999628
Q ss_pred HHC--CCEEEEECCCHHHHH
Q ss_conf 719--986999547600461
Q 000720 767 LLS--QKTVLYTTHQLEFLD 784 (1333)
Q Consensus 767 ~l~--~ktvilvtH~~~~l~ 784 (1333)
... +.-+|..||+++.++
T Consensus 141 ~~~~~~v~vi~ttn~~~~ld 160 (265)
T d1r7ra3 141 MSTKKNVFIIGATNRPDIID 160 (265)
T ss_dssp -----CCEEEECCBSCTTTS
T ss_pred CCCCCCEEEEEECCCCHHCC
T ss_conf 67779989999179922279
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.28 E-value=0.073 Score=27.07 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999878999946899998489
Q 000720 625 KVAVCGSVGSGKSSLLSSILGE 646 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge 646 (1333)
+++++|..|+|||||++.+.+.
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999991989999999739
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=91.24 E-value=0.1 Score=26.05 Aligned_cols=34 Identities=21% Similarity=0.296 Sum_probs=25.2
Q ss_pred CCCCCCEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 3323776751890999987899994689999848
Q 000720 612 IKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILG 645 (1333)
Q Consensus 612 ~~L~~nl~i~~G~~v~i~G~~GsGKStLl~~ilg 645 (1333)
..++.++-.-.|.-+.++|++|+||||+...+..
T Consensus 4 ~~~H~~~v~~~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 4 AQIHGVLLEVFGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEEETTEEEEEEESSSSSHHHHHHHHHT
T ss_pred CEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 3178999999999999981899998999999998
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=91.21 E-value=0.073 Score=27.11 Aligned_cols=26 Identities=23% Similarity=0.411 Sum_probs=22.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89099998789999468999984897
Q 000720 622 KGSKVAVCGSVGSGKSSLLSSILGEI 647 (1333)
Q Consensus 622 ~G~~v~i~G~~GsGKStLl~~ilge~ 647 (1333)
.+..++|+|...+|||||++++.+.-
T Consensus 9 ~~~kiGivG~Pn~GKSTlfnalT~~~ 34 (296)
T d1ni3a1 9 NNLKTGIVGMPNVGKSTFFRAITKSV 34 (296)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 87379997899998999999997789
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.16 E-value=0.18 Score=24.21 Aligned_cols=22 Identities=41% Similarity=0.676 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999878999946899998489
Q 000720 625 KVAVCGSVGSGKSSLLSSILGE 646 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge 646 (1333)
+++++|..|+|||||++.+.+.
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998997899999999739
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.10 E-value=0.14 Score=24.92 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998789999468999984897
Q 000720 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge~ 647 (1333)
.++|.||.||||||..+.|...+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99997999999899999999986
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.01 E-value=0.05 Score=28.35 Aligned_cols=22 Identities=45% Similarity=0.726 Sum_probs=17.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998799964899998883055
Q 000720 1238 IGVVGRTGSGKSTLIQALFRVV 1259 (1333)
Q Consensus 1238 VgIVGrTGSGKSTLi~lL~Rl~ 1259 (1333)
|.|+|||||||+||++.|..-.
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9998999999899999999748
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=90.99 E-value=0.075 Score=27.00 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=22.7
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 189099998789999468999984897
Q 000720 621 MKGSKVAVCGSVGSGKSSLLSSILGEI 647 (1333)
Q Consensus 621 ~~G~~v~i~G~~GsGKStLl~~ilge~ 647 (1333)
++.-.++++|..|||||||++.+.+.-
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 985799999999989899999996688
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.99 E-value=0.075 Score=27.00 Aligned_cols=27 Identities=19% Similarity=0.368 Sum_probs=23.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 890999987899994689999848975
Q 000720 622 KGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1333)
Q Consensus 622 ~G~~v~i~G~~GsGKStLl~~ilge~~ 648 (1333)
++++++|-|+.||||||+++.|...++
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998899987888779999999999973
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=90.98 E-value=0.0022 Score=38.61 Aligned_cols=29 Identities=17% Similarity=0.358 Sum_probs=22.7
Q ss_pred CEEEECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 767518909999878999946899998489
Q 000720 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGE 646 (1333)
Q Consensus 617 nl~i~~G~~v~i~G~~GsGKStLl~~ilge 646 (1333)
.+++.+| +++|+|+|||||||++.+|.--
T Consensus 19 ~i~f~~~-~tvi~G~NGsGKStil~Ai~~~ 47 (222)
T d1qhla_ 19 TFDLDEL-VTTLSGGNGAGKSTTMAAFVTA 47 (222)
T ss_dssp EECHHHH-HHHHHSCCSHHHHHHHHHHHHH
T ss_pred EEECCCC-EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9974998-0899889999879999999999
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=90.97 E-value=0.092 Score=26.33 Aligned_cols=22 Identities=45% Similarity=0.661 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879996489999888305
Q 000720 1237 KIGVVGRTGSGKSTLIQALFRV 1258 (1333)
Q Consensus 1237 kVgIVGrTGSGKSTLi~lL~Rl 1258 (1333)
.|+|+|++|+|||||+++|.+-
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=90.94 E-value=0.071 Score=27.19 Aligned_cols=68 Identities=15% Similarity=0.109 Sum_probs=29.0
Q ss_pred CCCCCCCCCCCCCCH-------HHHHHHHHHHHHCCCCC--EEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 996413788897896-------89999999999814998--99981878797999999999999988719986999547
Q 000720 709 GDLSVVGERGINLSG-------GQKQRIQLARAVYSNSD--VYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTH 778 (1333)
Q Consensus 709 gd~t~IGe~g~~LSG-------GQkqRi~lARAly~~~~--i~llDdp~salD~~~~~~i~~~~~~~~l~~ktvilvtH 778 (1333)
.+.+.|...|.+-+. .+.+.-.+++...++++ ++...+............+.++. . -...++++++|+
T Consensus 131 ~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~-~-~~~~r~i~Vitk 207 (306)
T d1jwyb_ 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV-D-PEGKRTIGVITK 207 (306)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH-C-SSCSSEEEEEEC
T ss_pred CCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHH-C-CCCCEEEEEEEC
T ss_conf 8806865888644366884035899999999999827775168763256310034999999973-8-678858999820
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=90.94 E-value=0.067 Score=27.40 Aligned_cols=28 Identities=25% Similarity=0.325 Sum_probs=23.6
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 1890999987899994689999848975
Q 000720 621 MKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1333)
Q Consensus 621 ~~G~~v~i~G~~GsGKStLl~~ilge~~ 648 (1333)
++.-+++|.|..||||||+++.|...++
T Consensus 7 ~kp~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 7 TQPFTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 9861999889999888999999998707
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.93 E-value=0.085 Score=26.59 Aligned_cols=23 Identities=35% Similarity=0.596 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998789999468999984897
Q 000720 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge~ 647 (1333)
+++++|+.|+|||||++.+.+.-
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~~ 26 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVNDK 26 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999969899999997098
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.90 E-value=0.11 Score=25.72 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999878999946899998489757
Q 000720 625 KVAVCGSVGSGKSSLLSSILGEIPR 649 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge~~~ 649 (1333)
.+.+.||.|+||||+..+++.++..
T Consensus 35 ~lll~Gp~G~GKTt~~~~la~~l~~ 59 (252)
T d1sxje2 35 HLLLYGPNGTGKKTRCMALLESIFG 59 (252)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 5998899999889999999976227
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=90.77 E-value=0.096 Score=26.18 Aligned_cols=41 Identities=15% Similarity=0.187 Sum_probs=27.0
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCEEEEECCCC
Q ss_conf 189099998789999468999984897579985799979479980788
Q 000720 621 MKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSS 668 (1333)
Q Consensus 621 ~~G~~v~i~G~~GsGKStLl~~ilge~~~~~G~vi~~~g~iayv~Q~~ 668 (1333)
++...++++||+|+||||-+.-|.-.+.. .|. +++.+.=+.
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLAa~~~~-~~~------kV~lit~Dt 49 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLAKMFVD-EGK------SVVLAAADT 49 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHH-TTC------CEEEEEECT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHH-CCC------CEEEEEECC
T ss_conf 99989999899999889999999999997-799------069996013
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=90.75 E-value=0.14 Score=24.93 Aligned_cols=33 Identities=21% Similarity=0.305 Sum_probs=24.6
Q ss_pred CCCCCEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 323776751890999987899994689999848
Q 000720 613 KLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILG 645 (1333)
Q Consensus 613 ~L~~nl~i~~G~~v~i~G~~GsGKStLl~~ilg 645 (1333)
+++.++-.-.|.-+.++|++|+||||+...+..
T Consensus 4 ~lH~~~v~~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 4 SMHGVLVDIYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEEEEEEETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEEEEECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 289999999999999980899998999999998
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=90.75 E-value=0.081 Score=26.74 Aligned_cols=23 Identities=22% Similarity=0.533 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998789999468999984897
Q 000720 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge~ 647 (1333)
.+.++|+.||||||+.+.|.-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 49998999999999999999996
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=90.72 E-value=0.053 Score=28.16 Aligned_cols=21 Identities=38% Similarity=0.615 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999648999988830
Q 000720 1237 KIGVVGRTGSGKSTLIQALFR 1257 (1333)
Q Consensus 1237 kVgIVGrTGSGKSTLi~lL~R 1257 (1333)
.|||||++++|||||++.|.+
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~ 23 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSS 23 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEE
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 699989999879999999968
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=90.66 E-value=0.071 Score=27.20 Aligned_cols=10 Identities=60% Similarity=0.644 Sum_probs=4.4
Q ss_pred EECCCEEEEE
Q ss_conf 5189099998
Q 000720 620 IMKGSKVAVC 629 (1333)
Q Consensus 620 i~~G~~v~i~ 629 (1333)
...|..++|+
T Consensus 79 ~~~g~~vavl 88 (327)
T d2p67a1 79 IREGLKVAVI 88 (327)
T ss_dssp HHTTCCEEEE
T ss_pred HHCCCCEEEE
T ss_conf 7569833220
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.66 E-value=0.093 Score=26.29 Aligned_cols=22 Identities=36% Similarity=0.655 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999878999946899998489
Q 000720 625 KVAVCGSVGSGKSSLLSSILGE 646 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge 646 (1333)
+++++|..|+|||||++.+.+.
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~~ 25 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVNK 25 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999719
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.60 E-value=0.098 Score=26.13 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=22.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89099998789999468999984897
Q 000720 622 KGSKVAVCGSVGSGKSSLLSSILGEI 647 (1333)
Q Consensus 622 ~G~~v~i~G~~GsGKStLl~~ilge~ 647 (1333)
+-..++|+||.||||||+...|...+
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 97289998999999899999999985
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=90.57 E-value=0.093 Score=26.30 Aligned_cols=26 Identities=35% Similarity=0.474 Sum_probs=22.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89099998789999468999984897
Q 000720 622 KGSKVAVCGSVGSGKSSLLSSILGEI 647 (1333)
Q Consensus 622 ~G~~v~i~G~~GsGKStLl~~ilge~ 647 (1333)
+..+++|+||.||||||+.+.|...+
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99489998999998899999999997
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.57 E-value=0.081 Score=26.74 Aligned_cols=51 Identities=12% Similarity=0.086 Sum_probs=21.6
Q ss_pred HHHHHHHHHHCCCCC--EEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 999999999814998--99981878797999999999999988719986999547
Q 000720 726 KQRIQLARAVYSNSD--VYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTH 778 (1333)
Q Consensus 726 kqRi~lARAly~~~~--i~llDdp~salD~~~~~~i~~~~~~~~l~~ktvilvtH 778 (1333)
.+-.++++....+++ +++.++....+.......+.+. + .-...++++++|+
T Consensus 149 ~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~~~-~-~~~~~r~i~Vltk 201 (299)
T d2akab1 149 FQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKE-V-DPQGQRTIGVITK 201 (299)
T ss_dssp HHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHH-H-CTTCSSEEEEEEC
T ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHH-H-CCCCCCEEEEEEC
T ss_conf 999999999862756035664034542112599999997-3-8677813667702
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=90.53 E-value=0.059 Score=27.79 Aligned_cols=20 Identities=45% Similarity=0.818 Sum_probs=17.3
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99987999648999988830
Q 000720 1238 IGVVGRTGSGKSTLIQALFR 1257 (1333)
Q Consensus 1238 VgIVGrTGSGKSTLi~lL~R 1257 (1333)
|||||++|+|||||++.|.+
T Consensus 4 VaivG~~nvGKSTLin~L~~ 23 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTR 23 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCS
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99989999989999999968
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=90.50 E-value=0.035 Score=29.55 Aligned_cols=40 Identities=23% Similarity=0.307 Sum_probs=29.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCEEEEECCCCCC
Q ss_conf 09999878999946899998489757998579997947998078878
Q 000720 624 SKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWI 670 (1333)
Q Consensus 624 ~~v~i~G~~GsGKStLl~~ilge~~~~~G~vi~~~g~iayv~Q~~wi 670 (1333)
-+++|+|++||||||+.+.+...+... | -+.+.++|+.+-
T Consensus 5 pIIgIaG~SGSGKTTva~~l~~i~~~~-~------v~~~iI~~Dsfy 44 (288)
T d1a7ja_ 5 PIISVTGSSGAGTSTVKHTFDQIFRRE-G------VKAVSIEGDAFH 44 (288)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHH-T------CCEEEEEGGGGB
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHC-C------CCEEEEECCCCC
T ss_conf 899998999780999999999997156-9------976999477787
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=90.47 E-value=0.08 Score=26.79 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=22.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 099499998799964899998883055
Q 000720 1233 PGEKKIGVVGRTGSGKSTLIQALFRVV 1259 (1333)
Q Consensus 1233 ~~GekVgIVGrTGSGKSTLi~lL~Rl~ 1259 (1333)
+..-||.+||++|+|||||++.|.+=.
T Consensus 11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 11 KKTGKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 777789999999989899999996788
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=90.46 E-value=0.083 Score=26.69 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=20.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 09999878999946899998489
Q 000720 624 SKVAVCGSVGSGKSSLLSSILGE 646 (1333)
Q Consensus 624 ~~v~i~G~~GsGKStLl~~ilge 646 (1333)
-.++++|+.|+|||||++.+.+.
T Consensus 17 ~kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 17 VRILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEEECCCCCCHHHHHHHHHCC
T ss_conf 79999999998999999999648
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.36 E-value=0.2 Score=23.69 Aligned_cols=23 Identities=43% Similarity=0.508 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998789999468999984897
Q 000720 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge~ 647 (1333)
+++++|..|+|||||++.+++.-
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~~ 27 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989939999999997199
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.36 E-value=0.11 Score=25.71 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=22.3
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 518909999878999946899998489
Q 000720 620 IMKGSKVAVCGSVGSGKSSLLSSILGE 646 (1333)
Q Consensus 620 i~~G~~v~i~G~~GsGKStLl~~ilge 646 (1333)
-++-+++.++|+.||||||+.+.++..
T Consensus 11 ~~~p~liil~G~pGsGKST~a~~l~~~ 37 (172)
T d1yj5a2 11 SPNPEVVVAVGFPGAGKSTFIQEHLVS 37 (172)
T ss_dssp CSSCCEEEEECCTTSSHHHHHHHHTGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 999989999899999899999999976
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.26 E-value=0.19 Score=23.95 Aligned_cols=24 Identities=38% Similarity=0.488 Sum_probs=20.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 099998789999468999984897
Q 000720 624 SKVAVCGSVGSGKSSLLSSILGEI 647 (1333)
Q Consensus 624 ~~v~i~G~~GsGKStLl~~ilge~ 647 (1333)
-.++++|..|+|||||++.+++.-
T Consensus 6 ~ki~vlG~~~vGKTsLi~~~~~~~ 29 (175)
T d2bmja1 6 LRLGVLGDARSGKSSLIHRFLTGS 29 (175)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 799999989978999999997197
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=90.25 E-value=0.095 Score=26.23 Aligned_cols=23 Identities=35% Similarity=0.405 Sum_probs=13.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799964899998883055
Q 000720 1237 KIGVVGRTGSGKSTLIQALFRVV 1259 (1333)
Q Consensus 1237 kVgIVGrTGSGKSTLi~lL~Rl~ 1259 (1333)
+|.|+|+.||||||+.+.|..-+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79898999999899999999997
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=90.24 E-value=0.079 Score=26.83 Aligned_cols=15 Identities=13% Similarity=0.120 Sum_probs=6.5
Q ss_pred CCCCCCCCCHHHHHH
Q ss_conf 410445811268997
Q 000720 976 SFFDSTPSSRILNRC 990 (1333)
Q Consensus 976 sfFd~tp~GrIlnR~ 990 (1333)
.+|=.+|.-..+.|.
T Consensus 139 ~i~Ld~~~~~~~~Ri 153 (197)
T d2vp4a1 139 IIYLRTSPEVAYERI 153 (197)
T ss_dssp EEEEECCHHHHHHHH
T ss_pred HHEEECCHHHHHHHH
T ss_conf 420240789999999
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.22 E-value=0.27 Score=22.77 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999878999946899998489
Q 000720 625 KVAVCGSVGSGKSSLLSSILGE 646 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge 646 (1333)
.++++|..|+|||||++.+++.
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998995989999999709
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.19 E-value=0.11 Score=25.88 Aligned_cols=21 Identities=33% Similarity=0.453 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987899994689999848
Q 000720 625 KVAVCGSVGSGKSSLLSSILG 645 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilg 645 (1333)
+++++|..|+|||||++.+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999982
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.00 E-value=0.11 Score=25.74 Aligned_cols=30 Identities=17% Similarity=0.259 Sum_probs=25.6
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 189099998789999468999984897579
Q 000720 621 MKGSKVAVCGSVGSGKSSLLSSILGEIPRI 650 (1333)
Q Consensus 621 ~~G~~v~i~G~~GsGKStLl~~ilge~~~~ 650 (1333)
++|.+++|.|+-||||||+.+.+...+...
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~~ 30 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALCAA 30 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 980599998998889999999999999877
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.87 E-value=0.16 Score=24.51 Aligned_cols=49 Identities=14% Similarity=0.152 Sum_probs=32.3
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCEEEEECCCC
Q ss_conf 75189099998789999468999984897579985799979479980788
Q 000720 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSS 668 (1333)
Q Consensus 619 ~i~~G~~v~i~G~~GsGKStLl~~ilge~~~~~G~vi~~~g~iayv~Q~~ 668 (1333)
-+++|..+.|.|+.|||||++...++.......... .....+.|.....
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~~~~~~~~~~-~~~~~~~~~~~~~ 81 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGG-YPGGKIIFIDTEN 81 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTT-BCCCEEEEEESSS
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCC-CCCCEEEEECHHH
T ss_conf 976897999988998878899999999997444316-6662488740177
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.86 E-value=0.13 Score=25.31 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998789999468999984897
Q 000720 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge~ 647 (1333)
.++++|+.|+|||||++.+.+.-
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~~ 29 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDNK 29 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999919899999996199
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=89.85 E-value=0.07 Score=27.24 Aligned_cols=27 Identities=22% Similarity=0.439 Sum_probs=22.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 890999987899994689999848975
Q 000720 622 KGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1333)
Q Consensus 622 ~G~~v~i~G~~GsGKStLl~~ilge~~ 648 (1333)
+.-.++|+|+.|+|||||+..+...+.
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~~~~ 76 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGSLLT 76 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 815986117998889999999999876
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=89.84 E-value=0.11 Score=25.80 Aligned_cols=20 Identities=40% Similarity=0.664 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998789999468999984
Q 000720 625 KVAVCGSVGSGKSSLLSSIL 644 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~il 644 (1333)
+++|+|..||||||..+.+-
T Consensus 5 iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99978988688999999999
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=89.84 E-value=0.097 Score=26.16 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=19.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 4999987999648999988830
Q 000720 1236 KKIGVVGRTGSGKSTLIQALFR 1257 (1333)
Q Consensus 1236 ekVgIVGrTGSGKSTLi~lL~R 1257 (1333)
=||+|||++|+|||||++.+..
T Consensus 6 ~kI~ivG~~~vGKSSLi~~~~~ 27 (169)
T d1upta_ 6 MRILILGLDGAGKTTILYRLQV 27 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHC
T ss_conf 2999999999899999999967
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.77 E-value=0.11 Score=25.80 Aligned_cols=20 Identities=45% Similarity=0.840 Sum_probs=13.7
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99987999648999988830
Q 000720 1238 IGVVGRTGSGKSTLIQALFR 1257 (1333)
Q Consensus 1238 VgIVGrTGSGKSTLi~lL~R 1257 (1333)
|.|+|||||||+||++.|..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~ 22 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQ 22 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999999999999997
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=89.76 E-value=0.12 Score=25.49 Aligned_cols=28 Identities=14% Similarity=0.380 Sum_probs=24.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8909999878999946899998489757
Q 000720 622 KGSKVAVCGSVGSGKSSLLSSILGEIPR 649 (1333)
Q Consensus 622 ~G~~v~i~G~~GsGKStLl~~ilge~~~ 649 (1333)
+|.+++|-|+-||||||+...+...+..
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~~ 28 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLEQ 28 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9878999899888799999999999996
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=89.68 E-value=0.21 Score=23.58 Aligned_cols=22 Identities=18% Similarity=0.409 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879996489999888305
Q 000720 1237 KIGVVGRTGSGKSTLIQALFRV 1258 (1333)
Q Consensus 1237 kVgIVGrTGSGKSTLi~lL~Rl 1258 (1333)
||.+||+.|+|||||++.|.+-
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~ 25 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGE 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHCCC
T ss_conf 9999999998999999998089
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=89.64 E-value=0.1 Score=25.97 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999648999988830
Q 000720 1237 KIGVVGRTGSGKSTLIQALFR 1257 (1333)
Q Consensus 1237 kVgIVGrTGSGKSTLi~lL~R 1257 (1333)
||.+||++|+|||||++.|.+
T Consensus 2 kivlvG~~~vGKSsLi~~l~~ 22 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKL 22 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 899999999898999999965
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.63 E-value=0.13 Score=25.20 Aligned_cols=23 Identities=43% Similarity=0.564 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998789999468999984897
Q 000720 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge~ 647 (1333)
+++++|..|+|||||++.+++.-
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~~ 28 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRNE 28 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999909899999998299
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=89.55 E-value=0.13 Score=25.21 Aligned_cols=27 Identities=4% Similarity=0.009 Sum_probs=10.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 789689999999999814998999818
Q 000720 720 NLSGGQKQRIQLARAVYSNSDVYIFDD 746 (1333)
Q Consensus 720 ~LSGGQkqRi~lARAly~~~~i~llDd 746 (1333)
-.+.-+-......|......+-+++|.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~i~dg 90 (194)
T d1qf9a_ 64 IVPSIVTVKLLKNAIDANQGKNFLVDG 90 (194)
T ss_dssp CCCHHHHHHHHHHHHHTSTTCCEEEET
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 320278999888776665328758873
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=89.40 E-value=0.11 Score=25.70 Aligned_cols=22 Identities=32% Similarity=0.649 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879996489999888305
Q 000720 1237 KIGVVGRTGSGKSTLIQALFRV 1258 (1333)
Q Consensus 1237 kVgIVGrTGSGKSTLi~lL~Rl 1258 (1333)
+|||||++.+|||||+++|.+.
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 9999907787099999999974
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=89.40 E-value=0.12 Score=25.32 Aligned_cols=41 Identities=10% Similarity=0.173 Sum_probs=20.4
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH
Q ss_conf 9989998187879799999999999998871998699954760046
Q 000720 738 NSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFL 783 (1333)
Q Consensus 738 ~~~i~llDdp~salD~~~~~~i~~~~~~~~l~~ktvilvtH~~~~l 783 (1333)
|.-+++.| +..++.+.+..++ +.+. ..++.+|++-+.++.+
T Consensus 95 D~~ilVvd-a~~g~~~~~~~~~-~~~~---~~~~p~iivlNK~D~~ 135 (227)
T d1g7sa4 95 DLAILIVD-INEGFKPQTQEAL-NILR---MYRTPFVVAANKIDRI 135 (227)
T ss_dssp SEEEEEEE-TTTCCCHHHHHHH-HHHH---HTTCCEEEEEECGGGS
T ss_pred CEEEEEEE-CCCCCCCCHHHHH-HHHH---CCCCEEEEEEECCCCC
T ss_conf 45899986-1237632025777-7764---3797599999893078
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.39 E-value=0.06 Score=27.76 Aligned_cols=10 Identities=20% Similarity=-0.087 Sum_probs=3.3
Q ss_pred CCCCEEEEEC
Q ss_conf 4998999818
Q 000720 737 SNSDVYIFDD 746 (1333)
Q Consensus 737 ~~~~i~llDd 746 (1333)
........|-
T Consensus 89 ~~~~~~~~~~ 98 (195)
T d1x6va3 89 DAGLVCITSF 98 (195)
T ss_dssp HTTCEEEEEC
T ss_pred HCCCCCCCCC
T ss_conf 6598633442
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=89.36 E-value=0.18 Score=24.05 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=25.2
Q ss_pred CCCCCEEEECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 3237767518909999878999946899998489
Q 000720 613 KLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGE 646 (1333)
Q Consensus 613 ~L~~nl~i~~G~~v~i~G~~GsGKStLl~~ilge 646 (1333)
+++.++-.-.|.=+.++|++|+||||+...++..
T Consensus 5 ~~H~~~v~~~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 5 SLHGVLVDVYGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEESEEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEEEEEECCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 4889999999999999808999999999999984
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.29 E-value=0.085 Score=26.59 Aligned_cols=19 Identities=11% Similarity=0.060 Sum_probs=8.0
Q ss_pred CCCCCCCCCCCCCHHHHHH
Q ss_conf 3855410445811268997
Q 000720 972 RAPISFFDSTPSSRILNRC 990 (1333)
Q Consensus 972 ~~p~sfFd~tp~GrIlnR~ 990 (1333)
.-.+.+|=..|....+.|.
T Consensus 152 ~Pdl~i~Ld~~pe~~~~Ri 170 (241)
T d1p5zb_ 152 ELDGIIYLQATPETCLHRI 170 (241)
T ss_dssp CCSEEEEEECCHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHH
T ss_conf 8765543145889999999
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=89.27 E-value=0.13 Score=25.23 Aligned_cols=25 Identities=36% Similarity=0.492 Sum_probs=20.5
Q ss_pred EECC-CEEEEECCCCCCHHHHHHHHH
Q ss_conf 5189-099998789999468999984
Q 000720 620 IMKG-SKVAVCGSVGSGKSSLLSSIL 644 (1333)
Q Consensus 620 i~~G-~~v~i~G~~GsGKStLl~~il 644 (1333)
+.-+ .+++++|+|||||||+|.||.
T Consensus 20 i~f~~~lnvlvG~NgsGKS~iL~Ai~ 45 (308)
T d1e69a_ 20 IGFSDRVTAIVGPNGSGKSNIIDAIK 45 (308)
T ss_dssp EECCSSEEEEECCTTTCSTHHHHHHH
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 96799819999999984899999999
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=89.24 E-value=0.15 Score=24.75 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=21.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 09949999879996489999888305
Q 000720 1233 PGEKKIGVVGRTGSGKSTLIQALFRV 1258 (1333)
Q Consensus 1233 ~~GekVgIVGrTGSGKSTLi~lL~Rl 1258 (1333)
++.-||.+||+.|+|||||++.|..-
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98579999999998989999999668
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=89.20 E-value=0.14 Score=24.97 Aligned_cols=15 Identities=20% Similarity=0.240 Sum_probs=9.4
Q ss_pred CCCCEEEEECCCCCC
Q ss_conf 499899981878797
Q 000720 737 SNSDVYIFDDPFSAV 751 (1333)
Q Consensus 737 ~~~~i~llDdp~sal 751 (1333)
.+.+++++|-..+..
T Consensus 131 ~~~~liViDSi~al~ 145 (263)
T d1u94a1 131 GAVDVIVVDSVAALT 145 (263)
T ss_dssp TCCSEEEEECGGGCC
T ss_pred CCCCEEEEECCCCCC
T ss_conf 999899998865566
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=89.17 E-value=0.12 Score=25.35 Aligned_cols=35 Identities=23% Similarity=0.273 Sum_probs=29.4
Q ss_pred CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 76751890999987899994689999848975799
Q 000720 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRIS 651 (1333)
Q Consensus 617 nl~i~~G~~v~i~G~~GsGKStLl~~ilge~~~~~ 651 (1333)
=+.+.+|+..+|.|+.|+|||+|+..|........
T Consensus 37 l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~~~~ 71 (289)
T d1xpua3 37 ASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNH 71 (289)
T ss_dssp HSCCBTTCEEEEEECSSSSHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 25645787556867999887899999999775158
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=89.07 E-value=0.1 Score=26.00 Aligned_cols=26 Identities=38% Similarity=0.496 Sum_probs=22.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 90999987899994689999848975
Q 000720 623 GSKVAVCGSVGSGKSSLLSSILGEIP 648 (1333)
Q Consensus 623 G~~v~i~G~~GsGKStLl~~ilge~~ 648 (1333)
...+.+.||.||||||+.++|.+++.
T Consensus 32 P~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 32 PTAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 97999889799889999999999865
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=89.00 E-value=0.14 Score=24.89 Aligned_cols=24 Identities=25% Similarity=0.513 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999987899994689999848975
Q 000720 625 KVAVCGSVGSGKSSLLSSILGEIP 648 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge~~ 648 (1333)
-+||+|.+.+|||||+++|+|...
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~~~ 30 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGVWT 30 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 999993458849999999970344
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=89.00 E-value=0.073 Score=27.10 Aligned_cols=26 Identities=23% Similarity=0.394 Sum_probs=21.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99499998799964899998883055
Q 000720 1234 GEKKIGVVGRTGSGKSTLIQALFRVV 1259 (1333)
Q Consensus 1234 ~GekVgIVGrTGSGKSTLi~lL~Rl~ 1259 (1333)
..-+|+|||++++|||||+++|.+--
T Consensus 15 ~~~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 15 TGIEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69789998899998999999985898
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.98 E-value=0.15 Score=24.83 Aligned_cols=28 Identities=14% Similarity=0.266 Sum_probs=24.6
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 1890999987899994689999848975
Q 000720 621 MKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1333)
Q Consensus 621 ~~G~~v~i~G~~GsGKStLl~~ilge~~ 648 (1333)
.+|.++++-|.-||||||+.+.+...+.
T Consensus 1 ~kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 1 GRGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9768999989988869999999999997
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.96 E-value=0.14 Score=25.06 Aligned_cols=24 Identities=38% Similarity=0.404 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999987899994689999848975
Q 000720 625 KVAVCGSVGSGKSSLLSSILGEIP 648 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge~~ 648 (1333)
.++++|..|+|||||++.+.+.-.
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999989899399999999818856
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=88.92 E-value=0.15 Score=24.70 Aligned_cols=67 Identities=15% Similarity=0.160 Sum_probs=29.8
Q ss_pred CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEECCCHH---HHHCCCEEEEEEC
Q ss_conf 96899999999998149989998187879799999999999998871--9986999547600---4610898999829
Q 000720 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLE---FLDAADLVLVMKD 794 (1333)
Q Consensus 722 SGGQkqRi~lARAly~~~~i~llDdp~salD~~~~~~i~~~~~~~~l--~~ktvilvtH~~~---~l~~~d~i~~l~~ 794 (1333)
.-|.-.|-.|++.+..++.- ...+...+...+.+....... ..+-+++...-+- ....+|.+++++-
T Consensus 61 ~d~~i~r~~l~~~vf~~~~~------~~~l~~i~hp~v~~~~~~~~~~~~~~~vv~e~~ll~e~~~~~~~d~ii~v~~ 132 (205)
T d1jjva_ 61 EQGELNRAALRERVFNHDED------KLWLNNLLHPAIRERMKQKLAEQTAPYTLFVVPLLIENKLTALCDRILVVDV 132 (205)
T ss_dssp -----CHHHHHHHHHTCHHH------HHHHHHHHHHHHHHHHHHHHHTCCSSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred CCCCCCHHHHHHHHHHHHHH------HHHHHCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHEEEECC
T ss_conf 78865289886441001356------6676403678999999999863569869997122100000222112001211
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.91 E-value=0.15 Score=24.62 Aligned_cols=22 Identities=41% Similarity=0.578 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999878999946899998489
Q 000720 625 KVAVCGSVGSGKSSLLSSILGE 646 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge 646 (1333)
+++++|..|+|||||++.+.+.
T Consensus 8 KI~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999997999999999849
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=88.77 E-value=0.16 Score=24.58 Aligned_cols=25 Identities=28% Similarity=0.415 Sum_probs=21.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0999987899994689999848975
Q 000720 624 SKVAVCGSVGSGKSSLLSSILGEIP 648 (1333)
Q Consensus 624 ~~v~i~G~~GsGKStLl~~ilge~~ 648 (1333)
-.++|-||.||||||..+.|...+.
T Consensus 4 i~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 4 IQIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 5999789998798999999999969
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=88.76 E-value=0.16 Score=24.57 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998789999468999984897
Q 000720 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge~ 647 (1333)
.+.|+|+.||||||+.+.|...+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999987
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.76 E-value=0.16 Score=24.47 Aligned_cols=23 Identities=35% Similarity=0.375 Sum_probs=20.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 09999878999946899998489
Q 000720 624 SKVAVCGSVGSGKSSLLSSILGE 646 (1333)
Q Consensus 624 ~~v~i~G~~GsGKStLl~~ilge 646 (1333)
=+++++|..|+|||||++.+++.
T Consensus 6 iKivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 6 IKCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 99999999997999999999749
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=88.72 E-value=0.12 Score=25.50 Aligned_cols=31 Identities=26% Similarity=0.246 Sum_probs=22.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCE
Q ss_conf 0999987899994689999848975799857
Q 000720 624 SKVAVCGSVGSGKSSLLSSILGEIPRISGAA 654 (1333)
Q Consensus 624 ~~v~i~G~~GsGKStLl~~ilge~~~~~G~v 654 (1333)
..+.|+|++|||||+++..++-..-...+.+
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~ 81 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELAYTGLLRGDRM 81 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHHHTTCEE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 6589990799968999999999998479988
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.67 E-value=0.15 Score=24.82 Aligned_cols=23 Identities=35% Similarity=0.523 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998789999468999984897
Q 000720 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge~ 647 (1333)
.++++|..|+|||||++.+.+.-
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~~ 27 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999979989999999998098
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=88.58 E-value=0.11 Score=25.71 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998789999468999984897
Q 000720 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge~ 647 (1333)
.+.|.||.||||||+.+.|...+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998899999899999999987
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.57 E-value=0.14 Score=24.85 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998789999468999984897
Q 000720 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge~ 647 (1333)
+++++|..|+|||||++.+++.-
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~~ 26 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVEDK 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999967899999998688
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=88.56 E-value=0.19 Score=23.96 Aligned_cols=31 Identities=29% Similarity=0.428 Sum_probs=26.9
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 7518909999878999946899998489757
Q 000720 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPR 649 (1333)
Q Consensus 619 ~i~~G~~v~i~G~~GsGKStLl~~ilge~~~ 649 (1333)
..++|.++.+.|+.|||||||.+.++..+-.
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 5799829999668776588999998764223
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=88.51 E-value=0.17 Score=24.37 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999878999946899998489
Q 000720 625 KVAVCGSVGSGKSSLLSSILGE 646 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge 646 (1333)
.++++|+.|+|||||++.+.+.
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998989999999719
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=88.40 E-value=0.2 Score=23.84 Aligned_cols=22 Identities=14% Similarity=0.199 Sum_probs=8.9
Q ss_pred CCCEEEEECCCCCCCHHHHHHH
Q ss_conf 9989998187879799999999
Q 000720 738 NSDVYIFDDPFSAVDAHTGTHL 759 (1333)
Q Consensus 738 ~~~i~llDdp~salD~~~~~~i 759 (1333)
++.+|+-.-|+.+-........
T Consensus 111 ~~~~~ir~~~~~~~~gg~~~~~ 132 (323)
T d2qm8a1 111 DRNAFIRPSPSSGTLGGVAAKT 132 (323)
T ss_dssp CTTEEEECCCCCSSHHHHHHHH
T ss_pred CCCEEECCCCCCCCCCCHHHHH
T ss_conf 3440112665345331106778
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=88.36 E-value=0.0084 Score=34.19 Aligned_cols=15 Identities=47% Similarity=0.722 Sum_probs=4.9
Q ss_pred EECCCCCCHHHHHHH
Q ss_conf 987999648999988
Q 000720 1240 VVGRTGSGKSTLIQA 1254 (1333)
Q Consensus 1240 IVGrTGSGKSTLi~l 1254 (1333)
|+|++||||||++.+
T Consensus 29 i~G~NGsGKStil~A 43 (222)
T d1qhla_ 29 LSGGNGAGKSTTMAA 43 (222)
T ss_dssp HHSCCSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHH
T ss_conf 988999987999999
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.36 E-value=0.14 Score=24.85 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=17.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEE--EEC
Q ss_conf 789689999999999814998999--818
Q 000720 720 NLSGGQKQRIQLARAVYSNSDVYI--FDD 746 (1333)
Q Consensus 720 ~LSGGQkqRi~lARAly~~~~i~l--lDd 746 (1333)
...|..+.|....+..+..++..+ +|-
T Consensus 53 d~~g~~~~~~~~~~~~~~~~~~~i~v~D~ 81 (207)
T d2fh5b1 53 DLPGHESLRFQLLDRFKSSARAVVFVVDS 81 (207)
T ss_dssp ECCCCHHHHHHHHHHHGGGEEEEEEEEET
T ss_pred ECCCCCCCCCHHHHHHHHHCCCCCEEEEC
T ss_conf 02112343301566655430556347776
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=88.32 E-value=0.22 Score=23.53 Aligned_cols=42 Identities=26% Similarity=0.347 Sum_probs=20.4
Q ss_pred CCCCCEEEEECCCCCCCHHHH--------HHHHHHHHHHHH--CCCEEEEECCC
Q ss_conf 149989998187879799999--------999999998871--99869995476
Q 000720 736 YSNSDVYIFDDPFSAVDAHTG--------THLFKQCLMGLL--SQKTVLYTTHQ 779 (1333)
Q Consensus 736 y~~~~i~llDdp~salD~~~~--------~~i~~~~~~~~l--~~ktvilvtH~ 779 (1333)
..+++++++|-. +.+++... ..+... +..+. .+.++++++|-
T Consensus 145 ~~~~~~vvID~l-~~l~~~~~~~~~~~~~~~~~~~-l~~lA~~~~i~vi~~~q~ 196 (277)
T d1cr2a_ 145 GLGCDVIILDHI-SIVVSASGESDERKMIDNLMTK-LKGFAKSTGVVLVVICHL 196 (277)
T ss_dssp TTCCSEEEEEEE-EC----------CHHHHHHHHH-HHHHHHHHCCEEEEEEEC
T ss_pred CCCCCEEEECCC-CCCCCCCCCCCHHHHHHHHHHH-HHHHHHHCCCCCEEECCC
T ss_conf 367625997054-2120346544306778999999-999765016552031035
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=88.32 E-value=0.16 Score=24.47 Aligned_cols=19 Identities=47% Similarity=0.572 Sum_probs=7.8
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9998799964899998883
Q 000720 1238 IGVVGRTGSGKSTLIQALF 1256 (1333)
Q Consensus 1238 VgIVGrTGSGKSTLi~lL~ 1256 (1333)
|-++|++||||||+.++|.
T Consensus 5 I~l~G~~GsGKSTvak~La 23 (169)
T d1kaga_ 5 IFLVGPMGAGKSTIGRQLA 23 (169)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9998999999999999999
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=88.30 E-value=0.15 Score=24.66 Aligned_cols=10 Identities=10% Similarity=0.046 Sum_probs=5.9
Q ss_pred HCCCEEEEEE
Q ss_conf 1089899982
Q 000720 784 DAADLVLVMK 793 (1333)
Q Consensus 784 ~~~d~i~~l~ 793 (1333)
..+|.+++++
T Consensus 118 ~~~d~vI~v~ 127 (191)
T d1uf9a_ 118 GRLHGTLLVA 127 (191)
T ss_dssp GGSSEEEEEC
T ss_pred CCCEEEEEEE
T ss_conf 3310279980
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=88.30 E-value=0.15 Score=24.65 Aligned_cols=38 Identities=13% Similarity=0.231 Sum_probs=26.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCEEEEECCC
Q ss_conf 909999878999946899998489757998579997947998078
Q 000720 623 GSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQS 667 (1333)
Q Consensus 623 G~~v~i~G~~GsGKStLl~~ilge~~~~~G~vi~~~g~iayv~Q~ 667 (1333)
-..++++||+|+||||-+.-+.-.+. ..|. +++.+.=+
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA~~~~-~~g~------kV~lit~D 46 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLARQFE-QQGK------SVMLAAGD 46 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHHHH-TTTC------CEEEECCC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH-HCCC------CEEEEECC
T ss_conf 97999989999998999999999999-7799------47998232
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.26 E-value=0.23 Score=23.32 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999878999946899998489757
Q 000720 625 KVAVCGSVGSGKSSLLSSILGEIPR 649 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge~~~ 649 (1333)
+++++|..|+|||||++.+.+....
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~~ 29 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHDS 29 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCCT
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 9999998992999999999728677
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=88.24 E-value=0.18 Score=24.16 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998789999468999984897
Q 000720 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge~ 647 (1333)
.+.|+|+.||||||+.+.|...+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999899999999987
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=88.23 E-value=0.15 Score=24.80 Aligned_cols=22 Identities=32% Similarity=0.601 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998789999468999984897
Q 000720 626 VAVCGSVGSGKSSLLSSILGEI 647 (1333)
Q Consensus 626 v~i~G~~GsGKStLl~~ilge~ 647 (1333)
++++|+.||||||+.+.+...+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998899999999983
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.22 E-value=0.15 Score=24.63 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879996489999888305
Q 000720 1237 KIGVVGRTGSGKSTLIQALFRV 1258 (1333)
Q Consensus 1237 kVgIVGrTGSGKSTLi~lL~Rl 1258 (1333)
||++||++|+|||||++.|.+=
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999999999999589
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.18 E-value=0.18 Score=24.09 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998789999468999984897
Q 000720 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge~ 647 (1333)
+++++|..|+|||||++.+++..
T Consensus 5 KivvvG~~~vGKTsli~r~~~~~ 27 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDKR 27 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999939999999996299
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.17 E-value=0.13 Score=25.09 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=22.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 90999987899994689999848975
Q 000720 623 GSKVAVCGSVGSGKSSLLSSILGEIP 648 (1333)
Q Consensus 623 G~~v~i~G~~GsGKStLl~~ilge~~ 648 (1333)
=..|+|+|+-++|||+|++.++|...
T Consensus 32 v~vvsi~G~~~sGKS~llN~l~~~~~ 57 (277)
T d1f5na2 32 MVVVAIVGLYRTGKSYLMNKLAGKKK 57 (277)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHTTCSS
T ss_pred EEEEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 79999889999979999999809987
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.14 E-value=0.19 Score=24.01 Aligned_cols=24 Identities=33% Similarity=0.562 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHH-CCCC
Q ss_conf 99998789999468999984-8975
Q 000720 625 KVAVCGSVGSGKSSLLSSIL-GEIP 648 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~il-ge~~ 648 (1333)
+++++|..|+|||||++.+. ++.+
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~~~~~ 28 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCAGRFP 28 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 9999999992989999999739998
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.99 E-value=0.19 Score=23.89 Aligned_cols=22 Identities=36% Similarity=0.623 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999878999946899998489
Q 000720 625 KVAVCGSVGSGKSSLLSSILGE 646 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge 646 (1333)
+++++|..|+|||||++.+.+.
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~~ 27 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVED 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998994999999999739
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=87.95 E-value=0.22 Score=23.41 Aligned_cols=35 Identities=23% Similarity=0.273 Sum_probs=26.5
Q ss_pred CCCCCCCE--EEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 63323776--751890999987899994689999848
Q 000720 611 TIKLTDKM--KIMKGSKVAVCGSVGSGKSSLLSSILG 645 (1333)
Q Consensus 611 ~~~L~~nl--~i~~G~~v~i~G~~GsGKStLl~~ilg 645 (1333)
.+.|.+-+ -+++|+++.|.|++|+|||+|..-++.
T Consensus 12 i~~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~~ 48 (242)
T d1tf7a1 12 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLY 48 (242)
T ss_dssp CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 3779885568996983999994799999999999999
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=87.94 E-value=0.11 Score=25.63 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=20.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8909999878999946899998489
Q 000720 622 KGSKVAVCGSVGSGKSSLLSSILGE 646 (1333)
Q Consensus 622 ~G~~v~i~G~~GsGKStLl~~ilge 646 (1333)
+.-.++++|+.|+|||||++.+.+.
T Consensus 16 k~~KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 16 KELRILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CEEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 6689999999999889999887338
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=87.75 E-value=0.18 Score=24.06 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998789999468999984897
Q 000720 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge~ 647 (1333)
-++++|++++|||||+..|++..
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~~~ 27 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTYVA 27 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHH
T ss_conf 99999478984999999999985
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.71 E-value=0.2 Score=23.74 Aligned_cols=13 Identities=23% Similarity=0.401 Sum_probs=8.1
Q ss_pred CCCCEEEEECCCC
Q ss_conf 4998999818787
Q 000720 737 SNSDVYIFDDPFS 749 (1333)
Q Consensus 737 ~~~~i~llDdp~s 749 (1333)
.+.++.++|....
T Consensus 84 ~~~~~vi~d~~~~ 96 (213)
T d1bifa1 84 EGGHVAVFDATNT 96 (213)
T ss_dssp TCCSEEEEESCCC
T ss_pred CCCCEEEEECCCC
T ss_conf 1898898606776
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.70 E-value=0.2 Score=23.73 Aligned_cols=11 Identities=27% Similarity=0.093 Sum_probs=4.1
Q ss_pred CCCCCCCCCCH
Q ss_conf 13788897896
Q 000720 713 VVGERGINLSG 723 (1333)
Q Consensus 713 ~IGe~g~~LSG 723 (1333)
.||-.|..=||
T Consensus 29 iIGi~G~qGSG 39 (286)
T d1odfa_ 29 FIFFSGPQGSG 39 (286)
T ss_dssp EEEEECCTTSS
T ss_pred EEEEECCCCCC
T ss_conf 99837998788
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=87.61 E-value=0.17 Score=24.32 Aligned_cols=24 Identities=13% Similarity=0.326 Sum_probs=19.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 099998789999468999984897
Q 000720 624 SKVAVCGSVGSGKSSLLSSILGEI 647 (1333)
Q Consensus 624 ~~v~i~G~~GsGKStLl~~ilge~ 647 (1333)
+.+.++|+.||||||+.+.+...+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 988998899998899999999994
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=87.56 E-value=0.28 Score=22.72 Aligned_cols=25 Identities=32% Similarity=0.562 Sum_probs=22.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999878999946899998489757
Q 000720 625 KVAVCGSVGSGKSSLLSSILGEIPR 649 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge~~~ 649 (1333)
-++|+|++.+|||||+..|+|....
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~~ 34 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWTS 34 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC-
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCH
T ss_conf 8999972488699999999704121
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.52 E-value=0.18 Score=24.06 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999878999946899998489
Q 000720 625 KVAVCGSVGSGKSSLLSSILGE 646 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge 646 (1333)
+++++|..|+|||||++.+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.28 E-value=0.2 Score=23.81 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999878999946899998489
Q 000720 625 KVAVCGSVGSGKSSLLSSILGE 646 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge 646 (1333)
+++++|..|+|||||++.+.+.
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997996989999999739
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=87.26 E-value=0.19 Score=23.87 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998789999468999984897
Q 000720 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge~ 647 (1333)
.++++|+.||||||..+.|.-.+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998799999899999999986
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=87.26 E-value=0.25 Score=23.00 Aligned_cols=22 Identities=41% Similarity=0.363 Sum_probs=8.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHH
Q ss_conf 9499998799964899998883
Q 000720 1235 EKKIGVVGRTGSGKSTLIQALF 1256 (1333)
Q Consensus 1235 GekVgIVGrTGSGKSTLi~lL~ 1256 (1333)
|..|=+.|.+|||||||.+.|.
T Consensus 24 g~vIwltGlsGsGKTTia~~L~ 45 (208)
T d1m7ga_ 24 GLTIWLTGLSASGKSTLAVELE 45 (208)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
T ss_conf 8699998999999899999999
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.13 E-value=0.15 Score=24.79 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999878999946899998489
Q 000720 625 KVAVCGSVGSGKSSLLSSILGE 646 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge 646 (1333)
+++++|..|+|||||++.+++.
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC--
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990889999999849
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.11 E-value=0.23 Score=23.34 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998789999468999984897
Q 000720 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge~ 647 (1333)
+++++|..|+|||||++.+++.-
T Consensus 6 KivlvG~~~vGKTsli~~~~~~~ 28 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEKK 28 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999949899999997299
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=87.09 E-value=0.27 Score=22.82 Aligned_cols=28 Identities=21% Similarity=0.355 Sum_probs=24.8
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 5189099998789999468999984897
Q 000720 620 IMKGSKVAVCGSVGSGKSSLLSSILGEI 647 (1333)
Q Consensus 620 i~~G~~v~i~G~~GsGKStLl~~ilge~ 647 (1333)
+++|+++.|.|+.|+|||++..-++-..
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 6288599999179999899999999999
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.07 E-value=0.42 Score=21.30 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=19.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 09999878999946899998489
Q 000720 624 SKVAVCGSVGSGKSSLLSSILGE 646 (1333)
Q Consensus 624 ~~v~i~G~~GsGKStLl~~ilge 646 (1333)
.+++++|..|+|||||++.++..
T Consensus 3 ~KivliG~~~vGKTsli~r~~~~ 25 (179)
T d1m7ba_ 3 CKIVVVGDSQCGKTALLHVFAKD 25 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 69999999995989999999729
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=87.03 E-value=0.14 Score=24.91 Aligned_cols=28 Identities=29% Similarity=0.423 Sum_probs=24.1
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 5189099998789999468999984897
Q 000720 620 IMKGSKVAVCGSVGSGKSSLLSSILGEI 647 (1333)
Q Consensus 620 i~~G~~v~i~G~~GsGKStLl~~ilge~ 647 (1333)
++++.++.+.||.||||||..+.|...+
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 4678289998999998799999999986
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.99 E-value=0.21 Score=23.69 Aligned_cols=22 Identities=41% Similarity=0.673 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999878999946899998489
Q 000720 625 KVAVCGSVGSGKSSLLSSILGE 646 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge 646 (1333)
+++++|..|+|||||++.+.+.
T Consensus 7 KI~lvG~~~vGKTsll~~~~~~ 28 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIEK 28 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990999999999709
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.91 E-value=0.21 Score=23.64 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999878999946899998489
Q 000720 625 KVAVCGSVGSGKSSLLSSILGE 646 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge 646 (1333)
+++++|..|+|||||++.+.+.
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998990989999999849
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.84 E-value=0.25 Score=23.06 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999878999946899998489
Q 000720 625 KVAVCGSVGSGKSSLLSSILGE 646 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge 646 (1333)
+++++|..|+|||||++.+.+.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.81 E-value=0.2 Score=23.77 Aligned_cols=13 Identities=15% Similarity=0.248 Sum_probs=5.4
Q ss_pred CCCCEEEEECCCC
Q ss_conf 4998999818787
Q 000720 737 SNSDVYIFDDPFS 749 (1333)
Q Consensus 737 ~~~~i~llDdp~s 749 (1333)
.+.+.+++|.-..
T Consensus 87 ~~~~~~vl~g~p~ 99 (196)
T d1ukza_ 87 ANKHKFLIDGFPR 99 (196)
T ss_dssp TTCCEEEEETCCC
T ss_pred CCCCCEEEECCCH
T ss_conf 3777535404313
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=86.73 E-value=0.25 Score=23.09 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=19.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 09999878999946899998489
Q 000720 624 SKVAVCGSVGSGKSSLLSSILGE 646 (1333)
Q Consensus 624 ~~v~i~G~~GsGKStLl~~ilge 646 (1333)
.+++|+|+.||||||..+.+...
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e~ 24 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMSN 24 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 89999799998899999999986
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.72 E-value=0.14 Score=25.00 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999878999946899998489
Q 000720 625 KVAVCGSVGSGKSSLLSSILGE 646 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge 646 (1333)
.++++|..|+|||||++.+++.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994999999999709
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.71 E-value=0.25 Score=22.98 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999878999946899998489
Q 000720 625 KVAVCGSVGSGKSSLLSSILGE 646 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge 646 (1333)
+++++|..|+|||||++.+.+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999859
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.69 E-value=0.2 Score=23.77 Aligned_cols=28 Identities=29% Similarity=0.379 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHH--CCCCCCCC
Q ss_conf 99998789999468999984--89757998
Q 000720 625 KVAVCGSVGSGKSSLLSSIL--GEIPRISG 652 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~il--ge~~~~~G 652 (1333)
++.++|..|+|||||++-+- -...|+-|
T Consensus 4 KivllG~~~vGKTsll~r~~f~~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCEEE
T ss_conf 999998999998999998846898887241
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=86.60 E-value=0.25 Score=23.03 Aligned_cols=67 Identities=19% Similarity=0.215 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHH--HHHCCCEEEEECCCHH---HHHCCCEEEEEEC
Q ss_conf 96899999999998149989998187879799999999999998--8719986999547600---4610898999829
Q 000720 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLM--GLLSQKTVLYTTHQLE---FLDAADLVLVMKD 794 (1333)
Q Consensus 722 SGGQkqRi~lARAly~~~~i~llDdp~salD~~~~~~i~~~~~~--~~l~~ktvilvtH~~~---~l~~~d~i~~l~~ 794 (1333)
..|.-.|-.|+..+..++.- ...|..-+...+.+.... .....+-+++...-+- ....+|.+++++.
T Consensus 62 ~~~~i~r~~L~~~vf~~~~~------~~~Le~i~hp~v~~~~~~~~~~~~~~~~~~e~~ll~e~~~~~~~~~iI~V~a 133 (208)
T d1vhta_ 62 ADGTLQRRALRERIFANPEE------KNWLNALLHPLIQQETQHQIQQATSPYVLWVVPLLVENSLYKKANRVLVVDV 133 (208)
T ss_dssp TTSCBCHHHHHHHHHTCHHH------HHHHHHHHHHHHHHHHHHHHHHCCSSEEEEECTTTTTTTGGGGCSEEEEEEC
T ss_pred CCCCCCHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCEEEEEEC
T ss_conf 78652001246665213889------9999988689999999998777426775333101102454556888999968
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=86.47 E-value=0.26 Score=22.95 Aligned_cols=28 Identities=25% Similarity=0.362 Sum_probs=23.3
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 1890999987899994689999848975
Q 000720 621 MKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1333)
Q Consensus 621 ~~G~~v~i~G~~GsGKStLl~~ilge~~ 648 (1333)
..+..+.|.|+.|+|||||+..++.+..
T Consensus 27 ~~~~~i~i~G~~G~GKTsLl~~~~~~~~ 54 (283)
T d2fnaa2 27 LRAPITLVLGLRRTGKSSIIKIGINELN 54 (283)
T ss_dssp TCSSEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 0598799986999829999999999779
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=86.46 E-value=0.23 Score=23.34 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=21.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 09999878999946899998489757
Q 000720 624 SKVAVCGSVGSGKSSLLSSILGEIPR 649 (1333)
Q Consensus 624 ~~v~i~G~~GsGKStLl~~ilge~~~ 649 (1333)
++++|+|+.||||||+.+.|...+..
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~~ 27 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 19999898998989999999999987
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.44 E-value=0.19 Score=23.87 Aligned_cols=26 Identities=19% Similarity=0.241 Sum_probs=22.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 90999987899994689999848975
Q 000720 623 GSKVAVCGSVGSGKSSLLSSILGEIP 648 (1333)
Q Consensus 623 G~~v~i~G~~GsGKStLl~~ilge~~ 648 (1333)
...+.+.||.|+||||+..++..++.
T Consensus 52 ~~~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 52 FRAAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 74499987999988899999999987
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.41 E-value=0.26 Score=22.89 Aligned_cols=22 Identities=36% Similarity=0.543 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999878999946899998489
Q 000720 625 KVAVCGSVGSGKSSLLSSILGE 646 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge 646 (1333)
+++++|+.|+|||||++.+++.
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~~ 29 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKDG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999992999999999719
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.35 E-value=0.24 Score=23.17 Aligned_cols=22 Identities=36% Similarity=0.548 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999878999946899998489
Q 000720 625 KVAVCGSVGSGKSSLLSSILGE 646 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge 646 (1333)
.++|+|+.|+|||||++.+.+.
T Consensus 8 KivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990989999999619
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=86.33 E-value=0.34 Score=22.04 Aligned_cols=32 Identities=19% Similarity=0.290 Sum_probs=25.3
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 18909999878999946899998489757998
Q 000720 621 MKGSKVAVCGSVGSGKSSLLSSILGEIPRISG 652 (1333)
Q Consensus 621 ~~G~~v~i~G~~GsGKStLl~~ilge~~~~~G 652 (1333)
+++-.++|+|..-+|||||++++.|.-....|
T Consensus 110 ~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~ 141 (273)
T d1puja_ 110 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTG 141 (273)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC---
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHCCCEEEEC
T ss_conf 77527899866754435554254266158878
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.32 E-value=0.23 Score=23.26 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=20.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 099998789999468999984897
Q 000720 624 SKVAVCGSVGSGKSSLLSSILGEI 647 (1333)
Q Consensus 624 ~~v~i~G~~GsGKStLl~~ilge~ 647 (1333)
.+++++|..|+|||||++.+.+.-
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~~~ 26 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSKDQ 26 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 799999989938899999997199
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=86.27 E-value=0.25 Score=23.09 Aligned_cols=19 Identities=11% Similarity=0.104 Sum_probs=9.9
Q ss_pred EEEEECCCCCCCHHHHHHH
Q ss_conf 9998187879799999999
Q 000720 741 VYIFDDPFSAVDAHTGTHL 759 (1333)
Q Consensus 741 i~llDdp~salD~~~~~~i 759 (1333)
.+|.=|...++.+++.+++
T Consensus 94 avlVvda~~Gv~~qt~~~~ 112 (204)
T d2c78a3 94 AILVVSAADGPMPQTREHI 112 (204)
T ss_dssp EEEEEETTTCCCHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
T ss_conf 9999989999847899999
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=86.17 E-value=0.29 Score=22.51 Aligned_cols=14 Identities=14% Similarity=0.211 Sum_probs=4.7
Q ss_pred CCCCCCCCCHHHHH
Q ss_conf 41044581126899
Q 000720 976 SFFDSTPSSRILNR 989 (1333)
Q Consensus 976 sfFd~tp~GrIlnR 989 (1333)
.+|=..|.-....|
T Consensus 135 ~i~Ld~~~e~~~~R 148 (210)
T d4tmka_ 135 TLYLDVTPEVGLKR 148 (210)
T ss_dssp EEEEECCHHHHHHH
T ss_pred EEEECCHHHHHHHH
T ss_conf 78743158998877
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.06 E-value=0.31 Score=22.35 Aligned_cols=20 Identities=30% Similarity=0.669 Sum_probs=14.1
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998799964899998883
Q 000720 1237 KIGVVGRTGSGKSTLIQALF 1256 (1333)
Q Consensus 1237 kVgIVGrTGSGKSTLi~lL~ 1256 (1333)
||.+||+.|+|||||++.+.
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~ 23 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYV 23 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999969899999997
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=86.05 E-value=0.31 Score=22.34 Aligned_cols=49 Identities=27% Similarity=0.273 Sum_probs=31.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCH-HHHH
Q ss_conf 994999987999648999988830558999769996971899994-8885
Q 000720 1234 GEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGL-QDLR 1282 (1333)
Q Consensus 1234 ~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvDI~~i~l-~~LR 1282 (1333)
.+..+.+||+||+||||.+.=|.+.+.-.+-++.+=..|...++- +.|+
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~ 54 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLS 54 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHH
T ss_conf 97799998999998899999999999977990799981366654026676
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.05 E-value=0.28 Score=22.66 Aligned_cols=23 Identities=39% Similarity=0.585 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998789999468999984897
Q 000720 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge~ 647 (1333)
+++++|..|+|||||++.+.+.-
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~~~ 31 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTDDT 31 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 89999989908899999997199
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.00 E-value=0.23 Score=23.26 Aligned_cols=28 Identities=21% Similarity=0.383 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCC
Q ss_conf 999987999648999988830-----5589997
Q 000720 1237 KIGVVGRTGSGKSTLIQALFR-----VVEPSGG 1264 (1333)
Q Consensus 1237 kVgIVGrTGSGKSTLi~lL~R-----l~ep~~G 1264 (1333)
||.+||.+|+|||||++.+.+ -+.|..|
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~ 39 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVG 39 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 999999999198999999973988865145555
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.83 E-value=0.29 Score=22.59 Aligned_cols=26 Identities=27% Similarity=0.469 Sum_probs=22.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 09999878999946899998489757
Q 000720 624 SKVAVCGSVGSGKSSLLSSILGEIPR 649 (1333)
Q Consensus 624 ~~v~i~G~~GsGKStLl~~ilge~~~ 649 (1333)
.+++|.|..||||||+++.+...+..
T Consensus 1 mlI~ieG~dGsGKST~~~~L~~~l~~ 26 (208)
T d1gsia_ 1 MLIAIEGVDGAGKRTLVEKLSGAFRA 26 (208)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 98999899878999999999999987
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.72 E-value=0.34 Score=22.03 Aligned_cols=28 Identities=29% Similarity=0.521 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCC
Q ss_conf 999987999648999988830-----5589997
Q 000720 1237 KIGVVGRTGSGKSTLIQALFR-----VVEPSGG 1264 (1333)
Q Consensus 1237 kVgIVGrTGSGKSTLi~lL~R-----l~ep~~G 1264 (1333)
||.+||.+|+|||||++.+.. -++|+-|
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~ 36 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVE 36 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEE
T ss_conf 899999899798999999970999876376133
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.70 E-value=0.25 Score=23.03 Aligned_cols=38 Identities=24% Similarity=0.516 Sum_probs=29.8
Q ss_pred CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCE
Q ss_conf 76751890999987899994689999848975799857
Q 000720 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA 654 (1333)
Q Consensus 617 nl~i~~G~~v~i~G~~GsGKStLl~~ilge~~~~~G~v 654 (1333)
-+.+.+|+..+|.|+.|+|||+|+..+..-....+..+
T Consensus 62 l~pigkGQr~~If~~~g~GKt~l~~~i~~~~~~~~~~v 99 (276)
T d2jdid3 62 LAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGY 99 (276)
T ss_dssp HSCEETTCEEEEEECTTSSHHHHHHHHHHHHTTTCSSE
T ss_pred ECCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCE
T ss_conf 25636788777667999898999999999887617996
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=85.67 E-value=0.27 Score=22.80 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=18.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 94999987999648999988830
Q 000720 1235 EKKIGVVGRTGSGKSTLIQALFR 1257 (1333)
Q Consensus 1235 GekVgIVGrTGSGKSTLi~lL~R 1257 (1333)
.=||.+||+.|+|||||++.+..
T Consensus 16 ~~kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 16 EVRILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEEECCCCCCHHHHHHHHHC
T ss_conf 77999999999899999999964
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.64 E-value=0.21 Score=23.62 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998789999468999984897
Q 000720 626 VAVCGSVGSGKSSLLSSILGEI 647 (1333)
Q Consensus 626 v~i~G~~GsGKStLl~~ilge~ 647 (1333)
++++|+.||||||+.+.+...+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8998899998899999999984
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.57 E-value=0.33 Score=22.14 Aligned_cols=21 Identities=38% Similarity=0.710 Sum_probs=16.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999648999988830
Q 000720 1237 KIGVVGRTGSGKSTLIQALFR 1257 (1333)
Q Consensus 1237 kVgIVGrTGSGKSTLi~lL~R 1257 (1333)
||.+||..|+|||||++.+..
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999098999999982
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=85.54 E-value=0.35 Score=21.90 Aligned_cols=45 Identities=16% Similarity=0.070 Sum_probs=24.6
Q ss_pred CCCCEEEEECCCCCC----CHHHHHHHHHHHHHHH-HCCCEEEEECCCHH
Q ss_conf 499899981878797----9999999999999887-19986999547600
Q 000720 737 SNSDVYIFDDPFSAV----DAHTGTHLFKQCLMGL-LSQKTVLYTTHQLE 781 (1333)
Q Consensus 737 ~~~~i~llDdp~sal----D~~~~~~i~~~~~~~~-l~~ktvilvtH~~~ 781 (1333)
.++++++.|....-. +.......+..+.... ..+.|++++.|...
T Consensus 124 ~~~~~viiD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (242)
T d1tf7a1 124 YRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIE 173 (242)
T ss_dssp HTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSS
T ss_pred HCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 31222002078899876057267899999999999863971688421025
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=85.48 E-value=0.29 Score=22.60 Aligned_cols=24 Identities=21% Similarity=0.475 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999987899994689999848975
Q 000720 625 KVAVCGSVGSGKSSLLSSILGEIP 648 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge~~ 648 (1333)
+++|-||.||||+|..+.|...+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899779998898999999999969
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.45 E-value=0.5 Score=20.74 Aligned_cols=29 Identities=24% Similarity=0.243 Sum_probs=22.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCC
Q ss_conf 99998789999468999984897579985
Q 000720 625 KVAVCGSVGSGKSSLLSSILGEIPRISGA 653 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge~~~~~G~ 653 (1333)
+++++|..|+|||||++-+...-.++.|.
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~~ 32 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTGI 32 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCSE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCE
T ss_conf 99999999988899999884089797247
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.44 E-value=0.32 Score=22.22 Aligned_cols=22 Identities=32% Similarity=0.341 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999878999946899998489
Q 000720 625 KVAVCGSVGSGKSSLLSSILGE 646 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge 646 (1333)
+++++|..|+|||||++.+.+.
T Consensus 5 KivlvG~~~vGKTsLi~r~~~~ 26 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCEN 26 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999993989999999829
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=85.44 E-value=0.68 Score=19.75 Aligned_cols=32 Identities=28% Similarity=0.355 Sum_probs=22.8
Q ss_pred EECCCEEEEECCCCCCHHHHH-HHHHCCCCCCC
Q ss_conf 518909999878999946899-99848975799
Q 000720 620 IMKGSKVAVCGSVGSGKSSLL-SSILGEIPRIS 651 (1333)
Q Consensus 620 i~~G~~v~i~G~~GsGKStLl-~~ilge~~~~~ 651 (1333)
+++|+.+.|++|+|||||... .+++.+.....
T Consensus 4 l~~~~~~il~~~tGsGKT~~~~~~~~~~~~~~~ 36 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRFLPQILAECARRR 36 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTT
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 875996799817998855999999999753138
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.33 E-value=0.26 Score=22.90 Aligned_cols=20 Identities=30% Similarity=0.667 Sum_probs=10.5
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998799964899998883
Q 000720 1237 KIGVVGRTGSGKSTLIQALF 1256 (1333)
Q Consensus 1237 kVgIVGrTGSGKSTLi~lL~ 1256 (1333)
||.+||.+|+|||||++.+.
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~ 23 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYV 23 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999919899999997
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.29 E-value=0.25 Score=23.02 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=11.6
Q ss_pred HHHHHHHC--CCCCEEEEECCCCCC
Q ss_conf 99999981--499899981878797
Q 000720 729 IQLARAVY--SNSDVYIFDDPFSAV 751 (1333)
Q Consensus 729 i~lARAly--~~~~i~llDdp~sal 751 (1333)
+.++..+. .+.+++++|...+..
T Consensus 127 ~~~~~~l~~~~~~~liIiDSi~al~ 151 (269)
T d1mo6a1 127 LEIADMLIRSGALDIVVIDSVAALV 151 (269)
T ss_dssp HHHHHHHHHTTCEEEEEEECSTTCC
T ss_pred HHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf 9999999855998789993302456
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=85.27 E-value=0.18 Score=24.15 Aligned_cols=29 Identities=14% Similarity=0.342 Sum_probs=24.9
Q ss_pred CEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 76751890999987899994689999848
Q 000720 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILG 645 (1333)
Q Consensus 617 nl~i~~G~~v~i~G~~GsGKStLl~~ilg 645 (1333)
-+.+.+|+..+|.|+.|+|||+|+..+..
T Consensus 61 l~pig~GQr~~Ifg~~g~GKt~l~~~~~~ 89 (276)
T d1fx0a3 61 MIPVGRGQRELIIGDRQTGKTAVATDTIL 89 (276)
T ss_dssp TSCCBTTCBCBEEESSSSSHHHHHHHHHH
T ss_pred CCCCCCCCEEEECCCCCCCHHHHHHHHHH
T ss_conf 14546776676006778885799999776
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=85.14 E-value=0.34 Score=22.07 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=11.3
Q ss_pred CCCEEEEECCCHHH--HHCCCEEEEEE
Q ss_conf 99869995476004--61089899982
Q 000720 769 SQKTVLYTTHQLEF--LDAADLVLVMK 793 (1333)
Q Consensus 769 ~~ktvilvtH~~~~--l~~~d~i~~l~ 793 (1333)
.....+++-++... .+.++..+.+.
T Consensus 121 ~~~~~~~~~r~~~~~~~~~~~~~~~~~ 147 (223)
T d1q3ta_ 121 QQGGIVMDGRDIGTVVLPQAELKIFLV 147 (223)
T ss_dssp TTSCEEEECSSCSSSSGGGCSEEEEEE
T ss_pred HCCCCEEEECCCCCCCCCCCCHHHHCC
T ss_conf 558803531111110134301122012
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=85.12 E-value=0.64 Score=19.93 Aligned_cols=31 Identities=19% Similarity=0.252 Sum_probs=25.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCC
Q ss_conf 9099998789999468999984897579985
Q 000720 623 GSKVAVCGSVGSGKSSLLSSILGEIPRISGA 653 (1333)
Q Consensus 623 G~~v~i~G~~GsGKStLl~~ilge~~~~~G~ 653 (1333)
...+.|.||.|+|||++++.+...+....+.
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~~~~~ 73 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKDKTTA 73 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTTSCCC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 8816888989998999999999997544688
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=85.05 E-value=0.26 Score=22.90 Aligned_cols=40 Identities=23% Similarity=0.335 Sum_probs=28.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECC----EEEEECCCC
Q ss_conf 9998789999468999984897579985799979----479980788
Q 000720 626 VAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----KKAYVPQSS 668 (1333)
Q Consensus 626 v~i~G~~GsGKStLl~~ilge~~~~~G~vi~~~g----~iayv~Q~~ 668 (1333)
+.++||+|||||-|.+.+.+++..- .+..++ ..+||..+-
T Consensus 52 ILliGPTGvGKTlLAr~LAk~l~VP---Fv~~daT~fTeaGYvG~DV 95 (443)
T d1g41a_ 52 ILMIGPTGVGKTEIARRLAKLANAP---FIKVEATKFTEVGYVGKEV 95 (443)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCC---EEEEEGGGGC----CCCCT
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCC---EEEEECCEEEECCEEECCH
T ss_conf 7998999988999999999873898---8986255114111110444
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.02 E-value=0.31 Score=22.31 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999878999946899998489
Q 000720 625 KVAVCGSVGSGKSSLLSSILGE 646 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge 646 (1333)
+++++|..|+|||||++.++..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999998999999999649
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=85.01 E-value=0.32 Score=22.24 Aligned_cols=25 Identities=16% Similarity=0.330 Sum_probs=21.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0999987899994689999848975
Q 000720 624 SKVAVCGSVGSGKSSLLSSILGEIP 648 (1333)
Q Consensus 624 ~~v~i~G~~GsGKStLl~~ilge~~ 648 (1333)
.-+.++||+|+|||.|.+++..++.
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 6699989999888899999862132
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=84.90 E-value=0.35 Score=21.91 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998789999468999984897
Q 000720 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge~ 647 (1333)
.+.|.|+.||||||+.+.|...+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999799999999998
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.80 E-value=0.52 Score=20.66 Aligned_cols=20 Identities=35% Similarity=0.622 Sum_probs=9.5
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998799964899998883
Q 000720 1237 KIGVVGRTGSGKSTLIQALF 1256 (1333)
Q Consensus 1237 kVgIVGrTGSGKSTLi~lL~ 1256 (1333)
||.+||..|+|||||++.+.
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~ 24 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFA 24 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999989929999999997
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=84.79 E-value=0.28 Score=22.61 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=10.4
Q ss_pred EEEECCCCCCCHHHHHHHHHHH
Q ss_conf 9981878797999999999999
Q 000720 742 YIFDDPFSAVDAHTGTHLFKQC 763 (1333)
Q Consensus 742 ~llDdp~salD~~~~~~i~~~~ 763 (1333)
++.=|+..++.++|.+ +++.|
T Consensus 99 vlVvda~~Gv~~~T~~-~w~~a 119 (276)
T d2bv3a2 99 IVVFDSSQGVEPQSET-VWRQA 119 (276)
T ss_dssp EEEEETTTSSCHHHHH-HHHHH
T ss_pred EEECCCCCCCCHHHHH-HHHHH
T ss_conf 7732256774466999-99999
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.73 E-value=0.39 Score=21.59 Aligned_cols=21 Identities=38% Similarity=0.561 Sum_probs=16.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999648999988830
Q 000720 1237 KIGVVGRTGSGKSTLIQALFR 1257 (1333)
Q Consensus 1237 kVgIVGrTGSGKSTLi~lL~R 1257 (1333)
||.+||.+|+|||||++.+..
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~ 25 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899399999999971
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=84.60 E-value=0.13 Score=25.30 Aligned_cols=100 Identities=11% Similarity=0.095 Sum_probs=49.9
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCEEEEECCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 18909999878999946899998489757998579997947998078878888788996039767877899999980121
Q 000720 621 MKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALN 700 (1333)
Q Consensus 621 ~~G~~v~i~G~~GsGKStLl~~ilge~~~~~G~vi~~~g~iayv~Q~~wi~~~TireNIlfg~~~~~~~y~~v~~~c~L~ 700 (1333)
++...++++||+|+||||.+.-|.-.+.. .|. +++.+.=+.+-..+ .|.+ +.|.+.+
T Consensus 10 k~p~vi~lvGptGvGKTTTiAKLA~~~~~-~g~------kV~lit~Dt~R~ga--~eQL--------~~~a~~l------ 66 (211)
T d1j8yf2 10 KIPYVIMLVGVQGTGKATTAGKLAYFYKK-KGF------KVGLVGADVYRPAA--LEQL--------QQLGQQI------ 66 (211)
T ss_dssp SSSEEEEEECSCCC----HHHHHHHHHHH-TTC------CEEEEECCCSSHHH--HHHH--------HHHHHHH------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHH-CCC------CEEEEEEECCCCCH--HHHH--------HHHCCCC------
T ss_conf 99989999899999989999999999997-799------36999720235515--6789--------8740146------
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC-CCCCH
Q ss_conf 378752079964137888978968999999999981499899981878-79799
Q 000720 701 QDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPF-SAVDA 753 (1333)
Q Consensus 701 ~dl~~l~~gd~t~IGe~g~~LSGGQkqRi~lARAly~~~~i~llDdp~-salD~ 753 (1333)
|-.....+....+. .-.+=++..+...+.|+.+.|=|= +..|.
T Consensus 67 --------~v~~~~~~~~~~~~--~~~~~a~~~~~~~~~d~IlIDTaGr~~~~~ 110 (211)
T d1j8yf2 67 --------GVPVYGEPGEKDVV--GIAKRGVEKFLSEKMEIIIVDTAGRHGYGE 110 (211)
T ss_dssp --------TCCEECCTTCCCHH--HHHHHHHHHHHHTTCSEEEEECCCSCCTTC
T ss_pred --------CCCEEECCCCHHHH--HHHHHHHHHHHCCCCCEEEEECCCCCCCCH
T ss_conf --------84223024410244--789999987402677369985377676313
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.60 E-value=0.42 Score=21.33 Aligned_cols=21 Identities=43% Similarity=0.616 Sum_probs=15.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999648999988830
Q 000720 1237 KIGVVGRTGSGKSTLIQALFR 1257 (1333)
Q Consensus 1237 kVgIVGrTGSGKSTLi~lL~R 1257 (1333)
||.+||.+|+|||||++.+..
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999982
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.59 E-value=0.39 Score=21.59 Aligned_cols=20 Identities=30% Similarity=0.517 Sum_probs=12.5
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998799964899998883
Q 000720 1237 KIGVVGRTGSGKSTLIQALF 1256 (1333)
Q Consensus 1237 kVgIVGrTGSGKSTLi~lL~ 1256 (1333)
||.+||.+|+|||||++.+.
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~ 26 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYT 26 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999919899999996
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.57 E-value=0.41 Score=21.39 Aligned_cols=15 Identities=20% Similarity=0.348 Sum_probs=6.8
Q ss_pred HHHHHHCCCCCEEEE
Q ss_conf 999998149989998
Q 000720 730 QLARAVYSNSDVYIF 744 (1333)
Q Consensus 730 ~lARAly~~~~i~ll 744 (1333)
.+.+..|+++|.+++
T Consensus 63 ~~~~~~~~~~d~~il 77 (168)
T d2gjsa1 63 WLPGHCMAMGDAYVI 77 (168)
T ss_dssp -CHHHHHTSCSEEEE
T ss_pred EECCCCHHHHHHHCE
T ss_conf 002310111110100
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=84.47 E-value=0.056 Score=27.97 Aligned_cols=22 Identities=36% Similarity=0.652 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879996489999888305
Q 000720 1237 KIGVVGRTGSGKSTLIQALFRV 1258 (1333)
Q Consensus 1237 kVgIVGrTGSGKSTLi~lL~Rl 1258 (1333)
||+++|++|+|||||+++|.+-
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999999999999589
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=84.45 E-value=0.38 Score=21.66 Aligned_cols=10 Identities=10% Similarity=0.301 Sum_probs=3.6
Q ss_pred CCCHHHHHHH
Q ss_conf 8112689973
Q 000720 982 PSSRILNRCS 991 (1333)
Q Consensus 982 p~GrIlnR~s 991 (1333)
+.-.+..|..
T Consensus 116 ~~e~~~~R~~ 125 (182)
T d1zina1 116 RQDVLMERLT 125 (182)
T ss_dssp CHHHHHHHHH
T ss_pred CCCHHHHCCC
T ss_conf 2102332013
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.40 E-value=0.37 Score=21.72 Aligned_cols=28 Identities=39% Similarity=0.523 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCC
Q ss_conf 999987999648999988830-----5589997
Q 000720 1237 KIGVVGRTGSGKSTLIQALFR-----VVEPSGG 1264 (1333)
Q Consensus 1237 kVgIVGrTGSGKSTLi~lL~R-----l~ep~~G 1264 (1333)
||.+||..|+|||||++.+.. -++|+.|
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~ 37 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE 37 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 999999799899999999980988986577410
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.36 E-value=0.31 Score=22.30 Aligned_cols=20 Identities=40% Similarity=0.582 Sum_probs=10.6
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998799964899998883
Q 000720 1237 KIGVVGRTGSGKSTLIQALF 1256 (1333)
Q Consensus 1237 kVgIVGrTGSGKSTLi~lL~ 1256 (1333)
||.+||..|+|||||++.+.
T Consensus 5 KivvvG~~~vGKTsli~r~~ 24 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFT 24 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999939999999996
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.22 E-value=0.37 Score=21.77 Aligned_cols=21 Identities=38% Similarity=0.632 Sum_probs=17.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999648999988830
Q 000720 1237 KIGVVGRTGSGKSTLIQALFR 1257 (1333)
Q Consensus 1237 kVgIVGrTGSGKSTLi~lL~R 1257 (1333)
||.+||..|+|||||++.+..
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999678999999986
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.14 E-value=0.39 Score=21.59 Aligned_cols=22 Identities=41% Similarity=0.517 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999878999946899998489
Q 000720 625 KVAVCGSVGSGKSSLLSSILGE 646 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge 646 (1333)
+++++|..|+|||||++.+.+.
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999998998999999999709
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=84.11 E-value=0.4 Score=21.48 Aligned_cols=45 Identities=24% Similarity=0.281 Sum_probs=24.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCH
Q ss_conf 994999987999648999988830558999769996971899994
Q 000720 1234 GEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGL 1278 (1333)
Q Consensus 1234 ~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvDI~~i~l 1278 (1333)
+-..+.+||+||+||||.+.=|...+--.+-+|.+=..|...++-
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R~gA 54 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAA 54 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCH
T ss_conf 998999989999988999999999999779906999601334204
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=84.05 E-value=0.35 Score=21.92 Aligned_cols=13 Identities=15% Similarity=0.314 Sum_probs=5.7
Q ss_pred CCCEEEEECCCCCC
Q ss_conf 99899981878797
Q 000720 738 NSDVYIFDDPFSAV 751 (1333)
Q Consensus 738 ~~~i~llDdp~sal 751 (1333)
.+++.++| ..+++
T Consensus 136 ~~~~~viD-s~~~~ 148 (254)
T d1pzna2 136 PVKLLIVD-SLTSH 148 (254)
T ss_dssp CEEEEEEE-TSSTT
T ss_pred CCEEEEEC-CHHHE
T ss_conf 84268603-11210
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=84.00 E-value=0.66 Score=19.86 Aligned_cols=53 Identities=17% Similarity=0.223 Sum_probs=26.3
Q ss_pred HHHHHHHC--CCCCEEEEECCCCCC-----CHH-------HHHHHHHHHHH---H-HHCCCEEEEECCCHH
Q ss_conf 99999981--499899981878797-----999-------99999999998---8-719986999547600
Q 000720 729 IQLARAVY--SNSDVYIFDDPFSAV-----DAH-------TGTHLFKQCLM---G-LLSQKTVLYTTHQLE 781 (1333)
Q Consensus 729 i~lARAly--~~~~i~llDdp~sal-----D~~-------~~~~i~~~~~~---~-~l~~ktvilvtH~~~ 781 (1333)
+.++..+. .+.+++++|-..+-. +.. ...+++...++ . +.+.++.+++|+|+.
T Consensus 124 ~~~~~~l~~~~~~~liIiDSi~al~~r~e~~~~~~~~~~~~~a~~l~~~lr~l~~~~~~~~~~vi~tNQv~ 194 (268)
T d1xp8a1 124 LEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVR 194 (268)
T ss_dssp HHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC-
T ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE
T ss_conf 99999998658971999945454553888716534105779999999999997766643297699996786
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=83.88 E-value=0.48 Score=20.92 Aligned_cols=33 Identities=24% Similarity=0.316 Sum_probs=27.0
Q ss_pred CCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 4225217750994999987999648999988830
Q 000720 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFR 1257 (1333)
Q Consensus 1224 VLk~iSl~I~~GekVgIVGrTGSGKSTLi~lL~R 1257 (1333)
.+|+-...+ .|.-|-|.|+||+||||+...|.+
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred EEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 178999999-999999981899998999999998
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=83.66 E-value=0.2 Score=23.71 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=21.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0999987899994689999848975
Q 000720 624 SKVAVCGSVGSGKSSLLSSILGEIP 648 (1333)
Q Consensus 624 ~~v~i~G~~GsGKStLl~~ilge~~ 648 (1333)
..+.+.||.|+||||+.+++..++.
T Consensus 46 ~~lll~Gp~G~GKTtla~~iak~l~ 70 (231)
T d1iqpa2 46 PHLLFAGPPGVGKTTAALALARELF 70 (231)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 7699978999748799999999987
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.65 E-value=0.37 Score=21.77 Aligned_cols=23 Identities=35% Similarity=0.371 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998789999468999984897
Q 000720 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge~ 647 (1333)
+++++|..|+|||||++.+.+.-
T Consensus 5 KvvllG~~~vGKTSli~r~~~~~ 27 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTNK 27 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999969999999997199
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=83.56 E-value=0.34 Score=22.02 Aligned_cols=19 Identities=11% Similarity=0.107 Sum_probs=8.9
Q ss_pred CCCEEEEECCCCCCCHHHHH
Q ss_conf 99899981878797999999
Q 000720 738 NSDVYIFDDPFSAVDAHTGT 757 (1333)
Q Consensus 738 ~~~i~llDdp~salD~~~~~ 757 (1333)
|.-+++. |+..++-+++.+
T Consensus 92 D~avlvv-da~~Gv~~~t~~ 110 (267)
T d2dy1a2 92 DAALVAV-SAEAGVQVGTER 110 (267)
T ss_dssp SEEEEEE-ETTTCSCHHHHH
T ss_pred CCEEEEE-ECCCCCCCHHHH
T ss_conf 7338984-235774211578
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=83.45 E-value=0.39 Score=21.58 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998789999468999984897
Q 000720 625 KVAVCGSVGSGKSSLLSSILGEI 647 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge~ 647 (1333)
-++|+|++.+|||||+..|++..
T Consensus 5 ni~iiGHvd~GKSTL~~~l~~~~ 27 (196)
T d1d2ea3 5 NVGTIGHVDHGKTTLTAAITKIL 27 (196)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHH
T ss_conf 89999588980999999999999
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=83.32 E-value=0.45 Score=21.10 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=22.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89099998789999468999984897
Q 000720 622 KGSKVAVCGSVGSGKSSLLSSILGEI 647 (1333)
Q Consensus 622 ~G~~v~i~G~~GsGKStLl~~ilge~ 647 (1333)
+...++|+|+.||||||+...|.-.+
T Consensus 5 r~mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 5 RLLRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHB
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 62169998899998799999999997
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.30 E-value=0.48 Score=20.90 Aligned_cols=21 Identities=33% Similarity=0.556 Sum_probs=16.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999648999988830
Q 000720 1237 KIGVVGRTGSGKSTLIQALFR 1257 (1333)
Q Consensus 1237 kVgIVGrTGSGKSTLi~lL~R 1257 (1333)
||.+||..|+|||||++.+..
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999498999999972
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=83.26 E-value=0.38 Score=21.63 Aligned_cols=19 Identities=32% Similarity=0.583 Sum_probs=11.1
Q ss_pred EEEEECCCCCCHHHHHHHH
Q ss_conf 9999879996489999888
Q 000720 1237 KIGVVGRTGSGKSTLIQAL 1255 (1333)
Q Consensus 1237 kVgIVGrTGSGKSTLi~lL 1255 (1333)
||.++|+.|+|||||++.+
T Consensus 4 ki~i~G~~~~GKTsLl~~l 22 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVI 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
T ss_conf 9999999998989999999
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=83.04 E-value=0.5 Score=20.74 Aligned_cols=31 Identities=19% Similarity=0.294 Sum_probs=24.0
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 7509949999879996489999888305589
Q 000720 1231 TFPGEKKIGVVGRTGSGKSTLIQALFRVVEP 1261 (1333)
Q Consensus 1231 ~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep 1261 (1333)
..+||..|.+.|.=||||||+++.+.+-.-.
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 5799829999668776588999998764223
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=82.95 E-value=0.29 Score=22.52 Aligned_cols=31 Identities=29% Similarity=0.356 Sum_probs=24.6
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6751890999987899994689999848975
Q 000720 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1333)
Q Consensus 618 l~i~~G~~v~i~G~~GsGKStLl~~ilge~~ 648 (1333)
+.++...-+.+.||.|||||++.++|..++.
T Consensus 40 ~g~~~~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 40 LGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp ---CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCCCCCEEEEECCCCCCCCHHHHHHHHHCC
T ss_conf 6999888678668998882289999999829
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.95 E-value=0.52 Score=20.64 Aligned_cols=22 Identities=36% Similarity=0.585 Sum_probs=18.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 4999987999648999988830
Q 000720 1236 KKIGVVGRTGSGKSTLIQALFR 1257 (1333)
Q Consensus 1236 ekVgIVGrTGSGKSTLi~lL~R 1257 (1333)
=||.+||..|+|||||++.+..
T Consensus 8 iKi~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 8 LKILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 2899999899088999999971
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=82.92 E-value=0.35 Score=21.94 Aligned_cols=35 Identities=11% Similarity=0.086 Sum_probs=14.6
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH
Q ss_conf 81878797999999999999988719986999547600
Q 000720 744 FDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLE 781 (1333)
Q Consensus 744 lDdp~salD~~~~~~i~~~~~~~~l~~ktvilvtH~~~ 781 (1333)
+=|...++-+++.+|+.. ...+..+-+|++-+.++
T Consensus 96 VVda~~G~~~QT~~~~~~---a~~~~~~~iIv~iNK~D 130 (196)
T d1d2ea3 96 VVAANDGPMPQTREHLLL---ARQIGVEHVVVYVNKAD 130 (196)
T ss_dssp EEETTTCSCHHHHHHHHH---HHHTTCCCEEEEEECGG
T ss_pred EEECCCCCCHHHHHHHHH---HHHHCCCCEEEEEECCC
T ss_conf 998688876348999999---99855884899985565
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=82.91 E-value=0.69 Score=19.68 Aligned_cols=33 Identities=21% Similarity=0.249 Sum_probs=23.5
Q ss_pred CCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 4225217750994999987999648999988830
Q 000720 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFR 1257 (1333)
Q Consensus 1224 VLk~iSl~I~~GekVgIVGrTGSGKSTLi~lL~R 1257 (1333)
.+|+- +---.|.-|.|+|+||+||||+...|.+
T Consensus 4 ~lH~~-~v~~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 4 SMHGV-LVDIYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEEE-EEEETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEE-EEEECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 28999-9999999999980899998999999998
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=82.55 E-value=0.23 Score=23.27 Aligned_cols=13 Identities=8% Similarity=0.120 Sum_probs=9.3
Q ss_pred CCEEEEECCCCCC
Q ss_conf 9899981878797
Q 000720 739 SDVYIFDDPFSAV 751 (1333)
Q Consensus 739 ~~i~llDdp~sal 751 (1333)
+.|+++||.=++-
T Consensus 116 ~~IIf~DEIdki~ 128 (309)
T d1ofha_ 116 NGIVFIDEIDKIC 128 (309)
T ss_dssp HCEEEEECGGGGS
T ss_pred CCEEEEHHHHHHH
T ss_conf 8568842464540
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.44 E-value=0.37 Score=21.74 Aligned_cols=38 Identities=26% Similarity=0.496 Sum_probs=25.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHC-----CCCCCCCE-----EEECCEEC
Q ss_conf 4999987999648999988830-----55899976-----99969718
Q 000720 1236 KKIGVVGRTGSGKSTLIQALFR-----VVEPSGGR-----ILIDGVDI 1273 (1333)
Q Consensus 1236 ekVgIVGrTGSGKSTLi~lL~R-----l~ep~~G~-----I~IDGvDI 1273 (1333)
-||.++|..|+|||||++.+.. -++|+.|. +.+||.++
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~ 52 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEY 52 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCEEEECCCEEE
T ss_conf 389999989929899999997198885447542113103883176798
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=82.44 E-value=0.48 Score=20.86 Aligned_cols=17 Identities=35% Similarity=0.292 Sum_probs=5.7
Q ss_pred EEEECCCCCCHHHHHHH
Q ss_conf 99987999648999988
Q 000720 1238 IGVVGRTGSGKSTLIQA 1254 (1333)
Q Consensus 1238 VgIVGrTGSGKSTLi~l 1254 (1333)
|||.|.-||||||+.+.
T Consensus 4 IgiTG~igSGKsTva~~ 20 (241)
T d1deka_ 4 IFLSGVKRSGKDTTADF 20 (241)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
T ss_conf 99979999889999999
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=82.32 E-value=0.29 Score=22.57 Aligned_cols=29 Identities=28% Similarity=0.296 Sum_probs=25.2
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 51890999987899994689999848975
Q 000720 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1333)
Q Consensus 620 i~~G~~v~i~G~~GsGKStLl~~ilge~~ 648 (1333)
++++..+.+.||.|+|||++.+++.+++.
T Consensus 151 ~~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 151 IPKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99767699989999888999999999859
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.28 E-value=0.42 Score=21.31 Aligned_cols=20 Identities=35% Similarity=0.416 Sum_probs=12.7
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998799964899998883
Q 000720 1237 KIGVVGRTGSGKSTLIQALF 1256 (1333)
Q Consensus 1237 kVgIVGrTGSGKSTLi~lL~ 1256 (1333)
||.+||.+|+|||||++.+.
T Consensus 7 KivviG~~~vGKTsli~~~~ 26 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYT 26 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999979999999997
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.20 E-value=0.44 Score=21.18 Aligned_cols=26 Identities=19% Similarity=0.494 Sum_probs=22.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 09999878999946899998489757
Q 000720 624 SKVAVCGSVGSGKSSLLSSILGEIPR 649 (1333)
Q Consensus 624 ~~v~i~G~~GsGKStLl~~ilge~~~ 649 (1333)
++++|-|..||||||+++.|...+..
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~~ 28 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 19999899888599999999998730
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.19 E-value=0.37 Score=21.74 Aligned_cols=36 Identities=31% Similarity=0.435 Sum_probs=23.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCCE-----EEECCEE
Q ss_conf 999987999648999988830-----55899976-----9996971
Q 000720 1237 KIGVVGRTGSGKSTLIQALFR-----VVEPSGGR-----ILIDGVD 1272 (1333)
Q Consensus 1237 kVgIVGrTGSGKSTLi~lL~R-----l~ep~~G~-----I~IDGvD 1272 (1333)
||.+||..|+|||||++.+.. -++|+.|. +.+||..
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~ 52 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRA 52 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCC
T ss_conf 8999999997999999999739988545766452000001001212
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.06 E-value=0.26 Score=22.95 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99987899994689999848975
Q 000720 626 VAVCGSVGSGKSSLLSSILGEIP 648 (1333)
Q Consensus 626 v~i~G~~GsGKStLl~~ilge~~ 648 (1333)
+.+.||.|+||||+.+++..++.
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l~ 58 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKELY 58 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99989999984999999999970
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=82.05 E-value=0.53 Score=20.56 Aligned_cols=41 Identities=32% Similarity=0.357 Sum_probs=24.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCC
Q ss_conf 49999879996489999888305589997699969718999
Q 000720 1236 KKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMI 1276 (1333)
Q Consensus 1236 ekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvDI~~i 1276 (1333)
..+.+||+||+||||.+.=|...+.-.+-+|.+=..|...+
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~ 50 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRA 50 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTCH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 79999899999989999999999997799479982321366
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=82.01 E-value=0.48 Score=20.89 Aligned_cols=22 Identities=36% Similarity=0.738 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998789999468999984897
Q 000720 626 VAVCGSVGSGKSSLLSSILGEI 647 (1333)
Q Consensus 626 v~i~G~~GsGKStLl~~ilge~ 647 (1333)
++++|++.+|||||+..|+...
T Consensus 12 i~viGHVd~GKSTL~~~Ll~~~ 33 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLLHDS 33 (222)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9999378989899999999986
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.94 E-value=0.39 Score=21.59 Aligned_cols=21 Identities=33% Similarity=0.667 Sum_probs=16.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999648999988830
Q 000720 1237 KIGVVGRTGSGKSTLIQALFR 1257 (1333)
Q Consensus 1237 kVgIVGrTGSGKSTLi~lL~R 1257 (1333)
||.+||..|+|||||++.+..
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999972
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=81.76 E-value=0.44 Score=21.18 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999878999946899998489
Q 000720 625 KVAVCGSVGSGKSSLLSSILGE 646 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge 646 (1333)
-++++|++++|||||+..|+..
T Consensus 5 Ni~viGHVd~GKTTL~~~Ll~~ 26 (224)
T d1jnya3 5 NLIVIGHVDHGKSTLVGRLLMD 26 (224)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 8999944799999999999998
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.73 E-value=0.4 Score=21.50 Aligned_cols=20 Identities=30% Similarity=0.581 Sum_probs=10.8
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998799964899998883
Q 000720 1237 KIGVVGRTGSGKSTLIQALF 1256 (1333)
Q Consensus 1237 kVgIVGrTGSGKSTLi~lL~ 1256 (1333)
||.+||..|+|||||++.+.
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~ 21 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFM 21 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 89999989909899999998
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.66 E-value=0.42 Score=21.32 Aligned_cols=20 Identities=30% Similarity=0.418 Sum_probs=9.3
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998799964899998883
Q 000720 1237 KIGVVGRTGSGKSTLIQALF 1256 (1333)
Q Consensus 1237 kVgIVGrTGSGKSTLi~lL~ 1256 (1333)
||.+||.+|+|||||++.+.
T Consensus 4 KivvvG~~~vGKTsLi~~~~ 23 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNS 23 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999989938899999997
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=81.61 E-value=0.37 Score=21.72 Aligned_cols=11 Identities=36% Similarity=0.682 Sum_probs=4.4
Q ss_pred HCCCEEEEECC
Q ss_conf 19986999547
Q 000720 768 LSQKTVLYTTH 778 (1333)
Q Consensus 768 l~~ktvilvtH 778 (1333)
+..|-++++.+
T Consensus 212 lt~KP~i~v~N 222 (296)
T d1ni3a1 212 LTAKPVIYLVN 222 (296)
T ss_dssp GGGSCEEEEEE
T ss_pred HCCCCEEEECC
T ss_conf 40787246505
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.56 E-value=0.58 Score=20.29 Aligned_cols=24 Identities=17% Similarity=0.393 Sum_probs=20.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 099998789999468999984897
Q 000720 624 SKVAVCGSVGSGKSSLLSSILGEI 647 (1333)
Q Consensus 624 ~~v~i~G~~GsGKStLl~~ilge~ 647 (1333)
..+.+.|+.||||||+.+.|...+
T Consensus 3 mrIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 3 IRMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 699998999999899999999996
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=81.47 E-value=0.45 Score=21.10 Aligned_cols=22 Identities=41% Similarity=0.668 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999878999946899998489
Q 000720 625 KVAVCGSVGSGKSSLLSSILGE 646 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge 646 (1333)
.+.|.|.-|||||||++-++..
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEECCCCCHHHHHHHHHHC
T ss_conf 8998648889999999999856
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=81.43 E-value=0.96 Score=18.61 Aligned_cols=27 Identities=22% Similarity=0.201 Sum_probs=23.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 999987899994689999848975799
Q 000720 625 KVAVCGSVGSGKSSLLSSILGEIPRIS 651 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge~~~~~ 651 (1333)
.+.|-|+.|+||||+++.+...+....
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~~ 34 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGGS 34 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 999988866789999999999865699
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.43 E-value=0.49 Score=20.83 Aligned_cols=21 Identities=33% Similarity=0.575 Sum_probs=17.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999648999988830
Q 000720 1237 KIGVVGRTGSGKSTLIQALFR 1257 (1333)
Q Consensus 1237 kVgIVGrTGSGKSTLi~lL~R 1257 (1333)
||.+||+.|+|||||++.+.+
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999799999999984
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=81.32 E-value=0.37 Score=21.77 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=22.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 890999987899994689999848975
Q 000720 622 KGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1333)
Q Consensus 622 ~G~~v~i~G~~GsGKStLl~~ilge~~ 648 (1333)
+.-.++++|+.|+|||||++.+.+...
T Consensus 11 k~~kIvlvG~~~vGKTSli~rl~~~~~ 37 (173)
T d1e0sa_ 11 KEMRILMLGLDAAGKTTILYKLKLGQS 37 (173)
T ss_dssp CCEEEEEEEETTSSHHHHHHHTTCCCC
T ss_pred CEEEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 747999999999878999999844888
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=81.28 E-value=0.42 Score=21.30 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=16.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 99499998799964899998883
Q 000720 1234 GEKKIGVVGRTGSGKSTLIQALF 1256 (1333)
Q Consensus 1234 ~GekVgIVGrTGSGKSTLi~lL~ 1256 (1333)
.-=||.+||.+|+|||||++.+.
T Consensus 16 k~~KI~lvG~~~vGKTsLi~~l~ 38 (182)
T d1moza_ 16 KELRILILGLDGAGKTTILYRLQ 38 (182)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC
T ss_pred CEEEEEEECCCCCCHHHHHHHHH
T ss_conf 66899999999998899998873
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.26 E-value=0.51 Score=20.73 Aligned_cols=28 Identities=29% Similarity=0.517 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCC
Q ss_conf 999987999648999988830-----5589997
Q 000720 1237 KIGVVGRTGSGKSTLIQALFR-----VVEPSGG 1264 (1333)
Q Consensus 1237 kVgIVGrTGSGKSTLi~lL~R-----l~ep~~G 1264 (1333)
||.+||..|+|||||++-+.. -++|+.|
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~ 37 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIG 37 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 999999999198999999972999865465301
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.16 E-value=0.5 Score=20.79 Aligned_cols=20 Identities=25% Similarity=0.441 Sum_probs=13.7
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998799964899998883
Q 000720 1237 KIGVVGRTGSGKSTLIQALF 1256 (1333)
Q Consensus 1237 kVgIVGrTGSGKSTLi~lL~ 1256 (1333)
||.+||..|+|||||++.+.
T Consensus 5 KivlvG~~~vGKTsLi~r~~ 24 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYC 24 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999939899999998
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.16 E-value=0.66 Score=19.85 Aligned_cols=20 Identities=30% Similarity=0.581 Sum_probs=15.5
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998799964899998883
Q 000720 1237 KIGVVGRTGSGKSTLIQALF 1256 (1333)
Q Consensus 1237 kVgIVGrTGSGKSTLi~lL~ 1256 (1333)
||.+||..|+|||||++-+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~ 27 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFV 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999949899999998
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.09 E-value=0.49 Score=20.83 Aligned_cols=20 Identities=35% Similarity=0.492 Sum_probs=12.7
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998799964899998883
Q 000720 1237 KIGVVGRTGSGKSTLIQALF 1256 (1333)
Q Consensus 1237 kVgIVGrTGSGKSTLi~lL~ 1256 (1333)
||.+||.+|+|||||++.+.
T Consensus 4 Kv~liG~~~vGKTsLl~~~~ 23 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFC 23 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999929899999997
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=81.06 E-value=0.31 Score=22.37 Aligned_cols=26 Identities=31% Similarity=0.447 Sum_probs=22.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 99998789999468999984897579
Q 000720 625 KVAVCGSVGSGKSSLLSSILGEIPRI 650 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge~~~~ 650 (1333)
.+.+.||.|+||||+.+++..++...
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~~ 62 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQTN 62 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCC
T ss_conf 48987999973889999998503888
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=80.79 E-value=0.53 Score=20.58 Aligned_cols=14 Identities=14% Similarity=-0.052 Sum_probs=9.2
Q ss_pred HHHHCCCCCCCCCE
Q ss_conf 99848975799857
Q 000720 641 SSILGEIPRISGAA 654 (1333)
Q Consensus 641 ~~ilge~~~~~G~v 654 (1333)
++|=...|.-.|+-
T Consensus 32 r~ID~l~PigrGQr 45 (289)
T d1xpua3 32 RVLDLASPIGRGQR 45 (289)
T ss_dssp HHHHHHSCCBTTCE
T ss_pred EEEEECCCCCCCCE
T ss_conf 35641256457875
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=80.60 E-value=0.72 Score=19.57 Aligned_cols=28 Identities=18% Similarity=0.130 Sum_probs=22.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8909999878999946899998489757
Q 000720 622 KGSKVAVCGSVGSGKSSLLSSILGEIPR 649 (1333)
Q Consensus 622 ~G~~v~i~G~~GsGKStLl~~ilge~~~ 649 (1333)
....++++||+|+||||.+.-|...+..
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~~ 36 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAKLALYYKG 36 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9868999899999889999999999997
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=80.53 E-value=0.47 Score=20.97 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=21.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0999987899994689999848975
Q 000720 624 SKVAVCGSVGSGKSSLLSSILGEIP 648 (1333)
Q Consensus 624 ~~v~i~G~~GsGKStLl~~ilge~~ 648 (1333)
.-+.+.||.|+|||++.+++.+++.
T Consensus 43 ~giLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 43 KGVLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 6488766898883599999998739
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.48 E-value=0.55 Score=20.44 Aligned_cols=20 Identities=35% Similarity=0.665 Sum_probs=16.4
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998799964899998883
Q 000720 1237 KIGVVGRTGSGKSTLIQALF 1256 (1333)
Q Consensus 1237 kVgIVGrTGSGKSTLi~lL~ 1256 (1333)
||.+||.+|+|||||++-+.
T Consensus 6 Ki~lvG~~~vGKTsli~rl~ 25 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFV 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 89999989949999999997
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.45 E-value=0.49 Score=20.85 Aligned_cols=21 Identities=43% Similarity=0.604 Sum_probs=16.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999648999988830
Q 000720 1237 KIGVVGRTGSGKSTLIQALFR 1257 (1333)
Q Consensus 1237 kVgIVGrTGSGKSTLi~lL~R 1257 (1333)
||.+||..|+|||||++-+..
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999799698999999973
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.40 E-value=0.53 Score=20.55 Aligned_cols=20 Identities=40% Similarity=0.813 Sum_probs=10.8
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998799964899998883
Q 000720 1237 KIGVVGRTGSGKSTLIQALF 1256 (1333)
Q Consensus 1237 kVgIVGrTGSGKSTLi~lL~ 1256 (1333)
||.+||..|+|||||++-+.
T Consensus 4 Ki~lvG~~~vGKTsli~r~~ 23 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFL 23 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999989978999999997
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.38 E-value=0.57 Score=20.32 Aligned_cols=20 Identities=45% Similarity=0.858 Sum_probs=11.1
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998799964899998883
Q 000720 1237 KIGVVGRTGSGKSTLIQALF 1256 (1333)
Q Consensus 1237 kVgIVGrTGSGKSTLi~lL~ 1256 (1333)
||.++|..|+|||||++.+.
T Consensus 7 ki~vlG~~~vGKTsLi~~~~ 26 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFL 26 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999989978999999997
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=80.33 E-value=0.69 Score=19.68 Aligned_cols=42 Identities=17% Similarity=0.312 Sum_probs=20.8
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH
Q ss_conf 1499899981878797999999999999988719986999547600
Q 000720 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLE 781 (1333)
Q Consensus 736 y~~~~i~llDdp~salD~~~~~~i~~~~~~~~l~~ktvilvtH~~~ 781 (1333)
..|.-+++.| +..++-+++.+|+.- ...+.-+.+|++-+.++
T Consensus 112 ~aD~ailVvd-a~~G~~~Qt~e~~~~---~~~~gv~~iiv~vNK~D 153 (222)
T d1zunb3 112 TCDLAIILVD-ARYGVQTQTRRHSYI---ASLLGIKHIVVAINKMD 153 (222)
T ss_dssp TCSEEEEEEE-TTTCSCHHHHHHHHH---HHHTTCCEEEEEEECTT
T ss_pred CCCEEEEEEC-CCCCCCCCHHHHHHH---HHHCCCCEEEEEEECCC
T ss_conf 5766898720-456766333899999---99839987999987001
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.21 E-value=0.59 Score=20.24 Aligned_cols=17 Identities=12% Similarity=-0.005 Sum_probs=7.6
Q ss_pred CCCCCCCCCCHHHHHHH
Q ss_conf 54104458112689973
Q 000720 975 ISFFDSTPSSRILNRCS 991 (1333)
Q Consensus 975 ~sfFd~tp~GrIlnR~s 991 (1333)
+.+|=.+|....+.|..
T Consensus 152 l~i~Ld~~~~~~~~Ri~ 168 (241)
T d2ocpa1 152 GFIYLQASPQVCLKRLY 168 (241)
T ss_dssp EEEEEECCHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHH
T ss_conf 57883378999999986
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=80.17 E-value=0.33 Score=22.11 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999987899994689999848975
Q 000720 625 KVAVCGSVGSGKSSLLSSILGEIP 648 (1333)
Q Consensus 625 ~v~i~G~~GsGKStLl~~ilge~~ 648 (1333)
-+.+.||.|+||||+.+++.+++.
T Consensus 37 ~~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 37 HLLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 389889799878889999999849
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=80.15 E-value=0.5 Score=20.75 Aligned_cols=10 Identities=10% Similarity=0.391 Sum_probs=5.3
Q ss_pred CCCEEEEECC
Q ss_conf 9989998187
Q 000720 738 NSDVYIFDDP 747 (1333)
Q Consensus 738 ~~~i~llDdp 747 (1333)
+..++++||.
T Consensus 109 ~~~iilide~ 118 (231)
T d1iqpa2 109 SFKIIFLDEA 118 (231)
T ss_dssp SCEEEEEETG
T ss_pred CCEEEEEHHH
T ss_conf 7228861434
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.09 E-value=0.66 Score=19.87 Aligned_cols=12 Identities=8% Similarity=0.052 Sum_probs=5.1
Q ss_pred CCCCCCHHHHHH
Q ss_conf 445811268997
Q 000720 979 DSTPSSRILNRC 990 (1333)
Q Consensus 979 d~tp~GrIlnR~ 990 (1333)
-..+...+..|.
T Consensus 116 L~~~~~~~~~R~ 127 (180)
T d1akya1 116 LKVDDELLVARI 127 (180)
T ss_dssp EECCHHHHHHHH
T ss_pred CCCCCCHHHHCC
T ss_conf 023320132002
|