Citrus Sinensis ID: 000734
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1324 | 2.2.26 [Sep-21-2011] | |||||||
| O04251 | 1329 | BRCT domain-containing pr | yes | no | 0.135 | 0.135 | 0.606 | 1e-110 | |
| Q7ZZY3 | 1513 | DNA topoisomerase 2-bindi | N/A | no | 0.138 | 0.120 | 0.285 | 3e-14 | |
| Q800K6 | 1513 | DNA topoisomerase 2-bindi | N/A | no | 0.138 | 0.120 | 0.285 | 3e-14 | |
| A6QR20 | 1055 | Ankyrin repeat domain-con | yes | no | 0.080 | 0.101 | 0.362 | 4e-12 | |
| Q8R3P9 | 1054 | Ankyrin repeat domain-con | yes | no | 0.143 | 0.180 | 0.283 | 7e-12 | |
| Q9BQI6 | 1058 | Ankyrin repeat domain-con | yes | no | 0.127 | 0.159 | 0.311 | 8e-12 | |
| Q6ZQF0 | 1515 | DNA topoisomerase 2-bindi | no | no | 0.155 | 0.135 | 0.256 | 3e-11 | |
| Q92547 | 1522 | DNA topoisomerase 2-bindi | no | no | 0.153 | 0.133 | 0.252 | 2e-10 | |
| A6H619 | 1682 | PHD and RING finger domai | no | no | 0.043 | 0.033 | 0.428 | 2e-10 | |
| Q63625 | 1685 | PHD and RING finger domai | no | no | 0.040 | 0.031 | 0.423 | 2e-09 |
| >sp|O04251|Y4211_ARATH BRCT domain-containing protein At4g02110 OS=Arabidopsis thaliana GN=At4g02110 PE=1 SV=3 | Back alignment and function desciption |
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Score = 400 bits (1028), Expect = e-110, Method: Compositional matrix adjust.
Identities = 182/300 (60%), Positives = 225/300 (75%)
Query: 946 VGSSDEVEKENRPVADEGQTSSPGVGKSILKSMKVSMKNKIGGNVNSNSIPLDKSLNKLD 1005
VG + EKEN V +E + G +S + KV+ K G S L +
Sbjct: 1028 VGDNSAKEKENIAVDNESRKVGSGGDQSPVARKKVAKSAKTGTKAEKESKQLRVNPLASR 1087
Query: 1006 KSLNKLKDEPIWFILSGHRLQRKEFQVVIRHLKGRLCRDSHQWSYQATHFIAPEIRRTEK 1065
K + EP +FI+SG R QR E+Q +IR LKG+ CRDSHQWSYQATHFIAPEIRRTEK
Sbjct: 1088 KVFQDQEHEPKFFIVSGPRSQRNEYQQIIRRLKGKCCRDSHQWSYQATHFIAPEIRRTEK 1147
Query: 1066 FFAAAASGRWILKTDYLSACSQAGKFLLEEPYEWHKNGLSEDGAINLEAPRKWRLLRERT 1125
FFAAAASG WILKTDY++ +AGK L EEPYEWH +GLS DGAINLE+P+KWRL+RE+T
Sbjct: 1148 FFAAAASGSWILKTDYVADSKEAGKLLQEEPYEWHSSGLSADGAINLESPKKWRLVREKT 1207
Query: 1126 GHGAFHGMRIIVYGDCIAPPLDTLKRVVKAGDGNILATSPPYTRFLNSGVDFAVVSPGMP 1185
GHGA +G+RI+VYGDC P LDTLKR VKAGDG ILAT+PPYTRFLN DFA++SPGMP
Sbjct: 1208 GHGALYGLRIVVYGDCTIPCLDTLKRAVKAGDGTILATAPPYTRFLNQNTDFALISPGMP 1267
Query: 1186 RVDLWVQEFLKHEIPCVVADYLVEFVCKPGYSLERHVQYNTHAWAEKSLSNLLSKAEEIV 1245
R D+W+QEF++HEIPCV++DYLVE+VCKPGY+L++HV YNT++WAEKS + + +A+ V
Sbjct: 1268 RDDVWIQEFIRHEIPCVLSDYLVEYVCKPGYALDKHVLYNTNSWAEKSFNKMQLRADLCV 1327
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7ZZY3|TOB1B_XENLA DNA topoisomerase 2-binding protein 1-B OS=Xenopus laevis GN=topbp1-B PE=2 SV=1 | Back alignment and function description |
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| >sp|Q800K6|TOB1A_XENLA DNA topoisomerase 2-binding protein 1-A OS=Xenopus laevis GN=topbp1-A PE=1 SV=2 | Back alignment and function description |
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| >sp|A6QR20|ANR32_BOVIN Ankyrin repeat domain-containing protein 32 OS=Bos taurus GN=ANKRD32 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q8R3P9|ANR32_MOUSE Ankyrin repeat domain-containing protein 32 OS=Mus musculus GN=Ankrd32 PE=2 SV=3 | Back alignment and function description |
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| >sp|Q9BQI6|ANR32_HUMAN Ankyrin repeat domain-containing protein 32 OS=Homo sapiens GN=ANKRD32 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q6ZQF0|TOPB1_MOUSE DNA topoisomerase 2-binding protein 1 OS=Mus musculus GN=Topbp1 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q92547|TOPB1_HUMAN DNA topoisomerase 2-binding protein 1 OS=Homo sapiens GN=TOPBP1 PE=1 SV=3 | Back alignment and function description |
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| >sp|A6H619|PHRF1_MOUSE PHD and RING finger domain-containing protein 1 OS=Mus musculus GN=Phrf1 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q63625|PHRF1_RAT PHD and RING finger domain-containing protein 1 OS=Rattus norvegicus GN=Phrf1 PE=1 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1324 | ||||||
| 449436751 | 1372 | PREDICTED: uncharacterized protein LOC10 | 0.935 | 0.903 | 0.416 | 0.0 | |
| 356536695 | 1118 | PREDICTED: uncharacterized protein LOC10 | 0.779 | 0.923 | 0.394 | 0.0 | |
| 147827541 | 1391 | hypothetical protein VITISV_036193 [Viti | 0.404 | 0.385 | 0.603 | 1e-180 | |
| 359479942 | 1314 | PREDICTED: BRCT domain-containing protei | 0.391 | 0.394 | 0.600 | 1e-173 | |
| 224064494 | 1221 | predicted protein [Populus trichocarpa] | 0.382 | 0.415 | 0.588 | 1e-167 | |
| 224131012 | 1282 | predicted protein [Populus trichocarpa] | 0.333 | 0.344 | 0.643 | 1e-166 | |
| 297743963 | 390 | unnamed protein product [Vitis vinifera] | 0.280 | 0.953 | 0.723 | 1e-166 | |
| 357442293 | 1346 | BRCT domain-containing protein [Medicago | 0.492 | 0.484 | 0.459 | 1e-155 | |
| 255548491 | 1069 | DNA replication regulator dpb11, putativ | 0.522 | 0.647 | 0.441 | 1e-134 | |
| 125543543 | 1412 | hypothetical protein OsI_11217 [Oryza sa | 0.225 | 0.211 | 0.653 | 1e-123 |
| >gi|449436751|ref|XP_004136156.1| PREDICTED: uncharacterized protein LOC101219784 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 881 bits (2277), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 593/1423 (41%), Positives = 798/1423 (56%), Gaps = 184/1423 (12%)
Query: 1 MEIDCQSKPFIGVRFVLFGFDPINERQVRSKLIDGGGVDVGLYTQSCTHVIVDK--IVFD 58
MEID +PF+GV FVLFGF+ ++E+QVRSKLIDGGGVDVG Y SC+HVIVDK IV+D
Sbjct: 1 MEIDYSRQPFLGVHFVLFGFNIVDEKQVRSKLIDGGGVDVGQYGPSCSHVIVDKNKIVYD 60
Query: 59 DSVCVAARTDGKTLVTSLWVDHSLDIGMPVDAASIMYRPLKDLNGIHGANSLVMCLTGYQ 118
D VCVAAR DGK LVT LWVDH D G+ DA S++YRPL++LNGI GA SLVMCLTGYQ
Sbjct: 61 DPVCVAARNDGKLLVTGLWVDHRYDSGLLADATSVLYRPLRELNGIPGAKSLVMCLTGYQ 120
Query: 119 RQDREDIMTLVRLMGSQFSKPLVANKVTHLICYKFEGEKYELAKKIKSIKLVNHRWLEDC 178
RQDR+D+MT+V L+G+QFSKPLVANKVTHLICYKFEG+KYELAK++++IKLVNHRWLED
Sbjct: 121 RQDRDDVMTMVGLIGAQFSKPLVANKVTHLICYKFEGDKYELAKRLRTIKLVNHRWLEDS 180
Query: 179 LRVWELLPEVNYDKSGYELETMEAEAKDSEEEIEVASLKQFGGRDVNKSPHNLNVGIINA 238
LR W LLPE NY+ SGY++E +EAEAKDSEEE K F R+ KSP + G+ +
Sbjct: 181 LREWMLLPESNYNISGYDMEMLEAEAKDSEEESNSGITKHFAMRNT-KSPDKMKFGLHST 239
Query: 239 HESPKSTLEGQGLLVGSTIPEASSGIDNAT------DMLSTPSRVSRSHQISGFDNVNIT 292
++ +T+P AS +D T ML+ P+ + FD +
Sbjct: 240 S------------VISNTVP-ASKTLDERTSFSDTKSMLTVPTTNTEFIPSGKFDKYD-- 284
Query: 293 EVNG--CHYTGASRD-------NSHEKTPNS--AKVKSDLVPTSKNAEISYHSGSKFCSL 341
EV G C N H T S KVK++ V + NA S + C+
Sbjct: 285 EVRGPICQEVDVFSTPWDSVPFNMHTTTSESEKQKVKNEAVTSPSNAARS----PQLCAT 340
Query: 342 NYSRKTPRKSILTMSSGK----------------VDNDVLNIISSKVENAETRTVTACGE 385
+YSR+TP KS L + SG+ D +++ K+E T + +
Sbjct: 341 SYSRRTPLKSPLPLFSGERLERADASCKIATGEIKDAIGVDVSLEKMEQVTYATFSGHEQ 400
Query: 386 IPKRGGELCHEEESIV-LPQKRMSNSTGAGSKSQKMSHNAAECNPRSPINYKTPVSETKS 444
+G +L +S LP K+ S+ + +S MS N C +P + + S
Sbjct: 401 NSSKGTDLFGTGDSNAGLPLKKNSDVSYDVPRSHSMSENTKSCTLNNPSTDEKVLGLEMS 460
Query: 445 SACHSFETGNHLSPGSNGHYTIETATPSTAPNKKPLTPDLPSLKTVTSEALHSEGADRNA 504
+ + + + H +T +++P KKPL DLP +V S G +
Sbjct: 461 RVSLNHDDSDKRRAKTLQHS--RGSTDTSSPIKKPLICDLPFGNSVRSPTEDVAGG---S 515
Query: 505 LETCRGSKESTVASKTDNEDFGMGSVHLDGEAEDAQNL-HQDLEGSSAKNRFLVMDKSPR 563
L+T R + ++ K + D +H + E + +L + E +N L +S
Sbjct: 516 LKTPRTPFQ--ISGKDLSPDKPNKPIH---DCEISGDLVGKTKETDRQQNGVLAAPESDS 570
Query: 564 PVNIDSPQ-----------VGKDKLIAKPIRKKMVAKKAFGS----GHTTNRKGSIYSNK 608
+ + + + L +KP R KM AKK+ GS G ++R GSI S+K
Sbjct: 571 GTKVTKTKSASPSSLNSSVLQNNNLQSKPQRIKMFAKKSLGSRPKLGSGSHR-GSILSSK 629
Query: 609 ISSL--SSPAVCLSREVERANQEKFSSTSELETDPPNLSDEATKEMETTLVAKCGDNSGD 666
+SL S + C N EK S+S P ++S K ++T A GD S
Sbjct: 630 TTSLNDSVSSSC-------GNGEKLFSSS-----PQDVSIGVKKVVKT---ADKGDFSHK 674
Query: 667 -GIKTMDDETEAPDEKYEIEFEKMLNNEKSEGVQSIHKEDTMMKRVP-GVGHEAHDSMVY 724
+ DD+T P+ K + E +M++ E + V I + + K + GV + S++
Sbjct: 675 YEVMDEDDKTSDPENKEDFE-HRMMDTENFKEVPQISDGEKVAKEIASGVKRNSSASVL- 732
Query: 725 GRDGI---TGKEVMNAEVGMTVSGKRFD---LDESTSKMD----GMKSKRKIRPSDKANG 774
D I T KEV+ + +++ + D L++ SK++ G ++ + S KA
Sbjct: 733 -NDTIPSGTLKEVIERKAPLSIGNVQLDELRLEDEKSKLNVGDRGPTEEKMLINSSKAK- 790
Query: 775 NVSADKETVESWDDEAEAADEKVGNVFEEALNDEKPEGVELIHKEDAELKRIPGAGHEAH 834
S + ++ E K + LN E V IH +E +P +
Sbjct: 791 --SKQGKVCKAPAREKNGKTGKKPQLVAAGLNTE----VHTIHDYISEKVNVPCEAMDED 844
Query: 835 DSVVCRHDEITGKEGINAQVRTTL---SGEMFDLDESNSKRD---GTKCKINRAKK---- 884
D ++ KE Q + +G +D+ +++ G KC N + +
Sbjct: 845 DKTF----DVENKEADFEQQMMDMENFNGVPLMIDDDKLEKEIASGVKC--NNSSRVLDD 898
Query: 885 -----------RPSGKASLKTLSADKGTVESKKDV--VGEENLNGE---KNEECREKEKN 928
P S+ + D+ ++E ++ VG+ + E KN + + K+
Sbjct: 899 TIPSGTLEEVIEPKAPVSIGNVQLDELSLEDEQSKLNVGDRSPTEEKMLKNSKEKSKQGK 958
Query: 929 VL-LPRSKTRVITASASKV---GSSDEV--------EKENRPVADEGQTSSPGVG----- 971
V P K V T ++ G + EV EKEN P D G +S V
Sbjct: 959 VCKAPSRKKNVKTGKKPQLVAAGLNTEVHTIPDHKSEKENVP-CDVGDKNSHIVKHFDKI 1017
Query: 972 --KSILKSMKVSMKNKIGGNVNSNSIPLDKSLNKLDKSLNKLKDEPIWFILSGHRLQRKE 1029
KS K KV+ K S+ I + S+ ++++ L+++K EP+ FILSGHRL+RKE
Sbjct: 1018 TVKSNTKQRKVTKK--------SSEISANSSM-EIEEVLSEVKPEPMCFILSGHRLERKE 1068
Query: 1030 FQVVIRHLKGRLCRDSHQWSYQATHFIAPE-IRRTEKFFAAAASGRWILKTDYLSACSQA 1088
FQ VI+HL+GR+CRDSHQWSYQATHFIAP+ +RRTEKFF+AAASGRWILK+DYL+ SQA
Sbjct: 1069 FQKVIKHLRGRVCRDSHQWSYQATHFIAPDPVRRTEKFFSAAASGRWILKSDYLTDSSQA 1128
Query: 1089 GKFLLEEPYEWHKNGLSEDGAINLEAPRKWRLLRERTGHGAFHGMRIIVYGDCIAPPLDT 1148
GK L EPYEW+K GL+EDGAINLEAPRKWRLLRE+TGHGAF+GMRII+YG+CIAPPLDT
Sbjct: 1129 GKLLDVEPYEWYKKGLTEDGAINLEAPRKWRLLREKTGHGAFYGMRIIIYGECIAPPLDT 1188
Query: 1149 LKRVVKAGDGNILATSPPYTRFLNSGVDFAVVSPGMPRVDLWVQEFLKHEIPCVVADYLV 1208
LKR VKAGDG ILATSPPYT+FL SGVDFAVV PGMPR D WVQEFL +EIPCV ADYLV
Sbjct: 1189 LKRAVKAGDGTILATSPPYTKFLKSGVDFAVVGPGMPRADTWVQEFLNNEIPCVAADYLV 1248
Query: 1209 EFVCKPGYSLERHVQYNTHAWAEKSLSNLLSKAEEIVMDLTPPNDYDTDKITCQACGCSD 1268
E+VCKPGY L++HV YNTHAWAE+S SNL SKAEE+ DL+ +D + I CQ CG D
Sbjct: 1249 EYVCKPGYPLDKHVLYNTHAWAERSFSNLQSKAEEVAEDLSSQDDCSDNDIACQECGSRD 1308
Query: 1269 RGEVMLICGDESGSVGCGVGMHIDCCDPPLESVPEEDWFCPTC 1311
RGEVMLICG+E GS GCG+GMH DCC+PPL +PE DWFC C
Sbjct: 1309 RGEVMLICGNEDGSSGCGIGMHTDCCNPPLLDIPEGDWFCSDC 1351
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Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356536695|ref|XP_003536871.1| PREDICTED: uncharacterized protein LOC100785416 [Glycine max] | Back alignment and taxonomy information |
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| >gi|147827541|emb|CAN62071.1| hypothetical protein VITISV_036193 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|359479942|ref|XP_002270203.2| PREDICTED: BRCT domain-containing protein At4g02110-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224064494|ref|XP_002301504.1| predicted protein [Populus trichocarpa] gi|222843230|gb|EEE80777.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|224131012|ref|XP_002320980.1| predicted protein [Populus trichocarpa] gi|222861753|gb|EEE99295.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|297743963|emb|CBI36933.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|357442293|ref|XP_003591424.1| BRCT domain-containing protein [Medicago truncatula] gi|355480472|gb|AES61675.1| BRCT domain-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|255548491|ref|XP_002515302.1| DNA replication regulator dpb11, putative [Ricinus communis] gi|223545782|gb|EEF47286.1| DNA replication regulator dpb11, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|125543543|gb|EAY89682.1| hypothetical protein OsI_11217 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1324 | ||||||
| TAIR|locus:2132198 | 1329 | AT4G02110 "AT4G02110" [Arabido | 0.233 | 0.232 | 0.585 | 3.7e-183 | |
| UNIPROTKB|Q800K6 | 1513 | topbp1-A "DNA topoisomerase 2- | 0.138 | 0.120 | 0.285 | 4.3e-18 | |
| UNIPROTKB|Q92547 | 1522 | TOPBP1 "DNA topoisomerase 2-bi | 0.136 | 0.118 | 0.255 | 2.8e-14 | |
| UNIPROTKB|G3X684 | 1524 | TOPBP1 "Uncharacterized protei | 0.134 | 0.116 | 0.266 | 1e-12 | |
| RGD|1562949 | 1516 | Topbp1 "topoisomerase (DNA) II | 0.117 | 0.102 | 0.289 | 4.6e-12 | |
| UNIPROTKB|Q9BQI6 | 1058 | ANKRD32 "Ankyrin repeat domain | 0.151 | 0.189 | 0.290 | 5.2e-12 | |
| MGI|MGI:1920018 | 1515 | Topbp1 "topoisomerase (DNA) II | 0.117 | 0.102 | 0.283 | 5.9e-12 | |
| UNIPROTKB|D6RED9 | 131 | ANKRD32 "Ankyrin repeat domain | 0.086 | 0.877 | 0.325 | 1.3e-11 | |
| MGI|MGI:2145448 | 1054 | Ankrd32 "ankyrin repeat domain | 0.149 | 0.187 | 0.279 | 1.4e-11 | |
| ZFIN|ZDB-GENE-041010-214 | 1122 | paxip1 "PAX interacting (with | 0.116 | 0.137 | 0.291 | 1.5e-11 |
| TAIR|locus:2132198 AT4G02110 "AT4G02110" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 974 (347.9 bits), Expect = 3.7e-183, Sum P(2) = 3.7e-183
Identities = 181/309 (58%), Positives = 222/309 (71%)
Query: 934 SKTRVITASASKVGSSDEVEKENRPVADEGQTSSPGVGKSILKSMKVSMKNKIGGNVNSN 993
S T VG + EKEN V +E + G +S + KV+ K G
Sbjct: 1016 SGTEATDTVMKDVGDNSAKEKENIAVDNESRKVGSGGDQSPVARKKVAKSAKTGTKAEKE 1075
Query: 994 SIPXXXXXXXXXXXXXXXXXEPIWFILSGHRLQRKEFQVVIRHLKGRLCRDSHQWSYQAT 1053
S EP +FI+SG R QR E+Q +IR LKG+ CRDSHQWSYQAT
Sbjct: 1076 SKQLRVNPLASRKVFQDQEHEPKFFIVSGPRSQRNEYQQIIRRLKGKCCRDSHQWSYQAT 1135
Query: 1054 HFIAPEIRRTEKFFAAAASGRWILKTDYLSACSQAGKFLLEEPYEWHKNGLSEDGAINLE 1113
HFIAPEIRRTEKFFAAAASG WILKTDY++ +AGK L EEPYEWH +GLS DGAINLE
Sbjct: 1136 HFIAPEIRRTEKFFAAAASGSWILKTDYVADSKEAGKLLQEEPYEWHSSGLSADGAINLE 1195
Query: 1114 APRKWRLLRERTGHGAFHGMRIIVYGDCIAPPLDTLKRVVKAGDGNILATSPPYTRFLNS 1173
+P+KWRL+RE+TGHGA +G+RI+VYGDC P LDTLKR VKAGDG ILAT+PPYTRFLN
Sbjct: 1196 SPKKWRLVREKTGHGALYGLRIVVYGDCTIPCLDTLKRAVKAGDGTILATAPPYTRFLNQ 1255
Query: 1174 GVDFAVVSPGMPRVDLWVQEFLKHEIPCVVADYLVEFVCKPGYSLERHVQYNTHAWAEKS 1233
DFA++SPGMPR D+W+QEF++HEIPCV++DYLVE+VCKPGY+L++HV YNT++WAEKS
Sbjct: 1256 NTDFALISPGMPRDDVWIQEFIRHEIPCVLSDYLVEYVCKPGYALDKHVLYNTNSWAEKS 1315
Query: 1234 LSNLLSKAE 1242
+ + +A+
Sbjct: 1316 FNKMQLRAD 1324
|
|
| UNIPROTKB|Q800K6 topbp1-A "DNA topoisomerase 2-binding protein 1-A" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q92547 TOPBP1 "DNA topoisomerase 2-binding protein 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|G3X684 TOPBP1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| RGD|1562949 Topbp1 "topoisomerase (DNA) II binding protein 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q9BQI6 ANKRD32 "Ankyrin repeat domain-containing protein 32" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:1920018 Topbp1 "topoisomerase (DNA) II binding protein 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|D6RED9 ANKRD32 "Ankyrin repeat domain-containing protein 32" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:2145448 Ankrd32 "ankyrin repeat domain 32" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-041010-214 paxip1 "PAX interacting (with transcription-activation domain) protein 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00028092001 | SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (1246 aa) | ||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1324 | |||
| pfam12738 | 63 | pfam12738, PTCB-BRCT, twin BRCT domain | 7e-20 | |
| smart00292 | 78 | smart00292, BRCT, breast cancer carboxy-terminal d | 4e-11 | |
| cd00027 | 72 | cd00027, BRCT, Breast Cancer Suppressor Protein (B | 3e-09 | |
| pfam00533 | 77 | pfam00533, BRCT, BRCA1 C Terminus (BRCT) domain | 9e-09 | |
| pfam00628 | 51 | pfam00628, PHD, PHD-finger | 1e-08 | |
| smart00249 | 47 | smart00249, PHD, PHD zinc finger | 2e-07 | |
| pfam00533 | 77 | pfam00533, BRCT, BRCA1 C Terminus (BRCT) domain | 8e-06 | |
| cd04718 | 148 | cd04718, BAH_plant_2, BAH, or Bromo Adjacent Homol | 2e-05 | |
| cd00027 | 72 | cd00027, BRCT, Breast Cancer Suppressor Protein (B | 8e-05 | |
| smart00292 | 78 | smart00292, BRCT, breast cancer carboxy-terminal d | 0.001 |
| >gnl|CDD|193214 pfam12738, PTCB-BRCT, twin BRCT domain | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 7e-20
Identities = 32/65 (49%), Positives = 45/65 (69%), Gaps = 2/65 (3%)
Query: 110 LVMCLTGYQRQDREDIMTLVRLMGSQFSKPLVANKVTHLICYKFEGEKYELAKKIKSIKL 169
LV+C++GY DR+ + L+ +G+++SK L KVTHLIC + EGEKYE AKK I +
Sbjct: 1 LVICVSGYSGDDRKYLQKLIEALGAEYSKDL-TKKVTHLICKRGEGEKYEKAKKWG-IPV 58
Query: 170 VNHRW 174
V+H W
Sbjct: 59 VSHLW 63
|
This is a BRCT domain that appears in duplicate in most member sequences. BRCT domains are peptide- and phosphopeptide-binding modules. BRCT domains are present in a number of proteins involved in DNA checkpoint controls and DNA repair. Length = 63 |
| >gnl|CDD|214602 smart00292, BRCT, breast cancer carboxy-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|237994 cd00027, BRCT, Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|215978 pfam00533, BRCT, BRCA1 C Terminus (BRCT) domain | Back alignment and domain information |
|---|
| >gnl|CDD|201356 pfam00628, PHD, PHD-finger | Back alignment and domain information |
|---|
| >gnl|CDD|214584 smart00249, PHD, PHD zinc finger | Back alignment and domain information |
|---|
| >gnl|CDD|215978 pfam00533, BRCT, BRCA1 C Terminus (BRCT) domain | Back alignment and domain information |
|---|
| >gnl|CDD|240069 cd04718, BAH_plant_2, BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function | Back alignment and domain information |
|---|
| >gnl|CDD|237994 cd00027, BRCT, Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|214602 smart00292, BRCT, breast cancer carboxy-terminal domain | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1324 | |||
| KOG1929 | 811 | consensus Nucleotide excision repair factor NEF2, | 99.96 | |
| KOG4362 | 684 | consensus Transcriptional regulator BRCA1 [Replica | 99.68 | |
| KOG2043 | 896 | consensus Signaling protein SWIFT and related BRCT | 99.5 | |
| KOG3524 | 850 | consensus Predicted guanine nucleotide exchange fa | 99.45 | |
| KOG0825 | 1134 | consensus PHD Zn-finger protein [General function | 99.36 | |
| PF12738 | 63 | PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2W | 99.31 | |
| PF00533 | 78 | BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IP | 99.21 | |
| PF00533 | 78 | BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IP | 99.2 | |
| KOG3226 | 508 | consensus DNA repair protein [Replication, recombi | 99.08 | |
| smart00292 | 80 | BRCT breast cancer carboxy-terminal domain. | 99.02 | |
| smart00292 | 80 | BRCT breast cancer carboxy-terminal domain. | 99.01 | |
| cd00027 | 72 | BRCT Breast Cancer Suppressor Protein (BRCA1), car | 98.98 | |
| KOG1929 | 811 | consensus Nucleotide excision repair factor NEF2, | 98.96 | |
| PF12738 | 63 | PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2W | 98.92 | |
| cd00027 | 72 | BRCT Breast Cancer Suppressor Protein (BRCA1), car | 98.86 | |
| KOG3226 | 508 | consensus DNA repair protein [Replication, recombi | 98.84 | |
| KOG1244 | 336 | consensus Predicted transcription factor Requiem/N | 98.8 | |
| KOG0966 | 881 | consensus ATP-dependent DNA ligase IV [Replication | 98.72 | |
| KOG3548 | 1176 | consensus DNA damage checkpoint protein RHP9/CRB2/ | 98.61 | |
| KOG3548 | 1176 | consensus DNA damage checkpoint protein RHP9/CRB2/ | 98.54 | |
| KOG4299 | 613 | consensus PHD Zn-finger protein [General function | 98.47 | |
| PF00628 | 51 | PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( | 98.41 | |
| PLN03122 | 815 | Poly [ADP-ribose] polymerase; Provisional | 98.21 | |
| KOG1973 | 274 | consensus Chromatin remodeling protein, contains P | 98.14 | |
| COG5034 | 271 | TNG2 Chromatin remodeling protein, contains PhD zi | 98.13 | |
| PLN03123 | 981 | poly [ADP-ribose] polymerase; Provisional | 98.12 | |
| KOG4362 | 684 | consensus Transcriptional regulator BRCA1 [Replica | 98.09 | |
| KOG1512 | 381 | consensus PHD Zn-finger protein [General function | 98.06 | |
| smart00249 | 47 | PHD PHD zinc finger. The plant homeodomain (PHD) f | 98.0 | |
| KOG1245 | 1404 | consensus Chromatin remodeling complex WSTF-ISWI, | 97.79 | |
| KOG0383 | 696 | consensus Predicted helicase [General function pre | 97.64 | |
| KOG4443 | 694 | consensus Putative transcription factor HALR/MLL3, | 97.55 | |
| PLN03122 | 815 | Poly [ADP-ribose] polymerase; Provisional | 97.53 | |
| PLN03123 | 981 | poly [ADP-ribose] polymerase; Provisional | 97.26 | |
| KOG0955 | 1051 | consensus PHD finger protein BR140/LIN-49 [General | 97.21 | |
| KOG0957 | 707 | consensus PHD finger protein [General function pre | 97.13 | |
| KOG2043 | 896 | consensus Signaling protein SWIFT and related BRCT | 97.05 | |
| PRK14350 | 669 | ligA NAD-dependent DNA ligase LigA; Provisional | 96.99 | |
| PRK06063 | 313 | DNA polymerase III subunit epsilon; Provisional | 96.97 | |
| PRK07956 | 665 | ligA NAD-dependent DNA ligase LigA; Validated | 96.9 | |
| KOG3524 | 850 | consensus Predicted guanine nucleotide exchange fa | 96.84 | |
| KOG2481 | 570 | consensus Protein required for normal rRNA process | 96.74 | |
| PRK14351 | 689 | ligA NAD-dependent DNA ligase LigA; Provisional | 96.72 | |
| KOG0956 | 900 | consensus PHD finger protein AF10 [General functio | 96.7 | |
| PRK14350 | 669 | ligA NAD-dependent DNA ligase LigA; Provisional | 96.65 | |
| PRK06195 | 309 | DNA polymerase III subunit epsilon; Validated | 96.56 | |
| KOG4323 | 464 | consensus Polycomb-like PHD Zn-finger protein [Gen | 96.53 | |
| TIGR00575 | 652 | dnlj DNA ligase, NAD-dependent. The member of this | 96.42 | |
| COG5141 | 669 | PHD zinc finger-containing protein [General functi | 96.33 | |
| KOG0954 | 893 | consensus PHD finger protein [General function pre | 96.31 | |
| KOG0323 | 635 | consensus TFIIF-interacting CTD phosphatases, incl | 96.29 | |
| COG0272 | 667 | Lig NAD-dependent DNA ligase (contains BRCT domain | 96.24 | |
| COG5163 | 591 | NOP7 Protein required for biogenesis of the 60S ri | 96.21 | |
| PRK07956 | 665 | ligA NAD-dependent DNA ligase LigA; Validated | 96.18 | |
| PRK06063 | 313 | DNA polymerase III subunit epsilon; Provisional | 96.18 | |
| COG0272 | 667 | Lig NAD-dependent DNA ligase (contains BRCT domain | 96.04 | |
| PRK06195 | 309 | DNA polymerase III subunit epsilon; Validated | 96.04 | |
| PRK14351 | 689 | ligA NAD-dependent DNA ligase LigA; Provisional | 96.03 | |
| KOG0966 | 881 | consensus ATP-dependent DNA ligase IV [Replication | 95.92 | |
| TIGR00575 | 652 | dnlj DNA ligase, NAD-dependent. The member of this | 95.74 | |
| PF13831 | 36 | PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A. | 94.96 | |
| KOG2481 | 570 | consensus Protein required for normal rRNA process | 94.9 | |
| COG5163 | 591 | NOP7 Protein required for biogenesis of the 60S ri | 94.68 | |
| KOG2093 | 1016 | consensus Translesion DNA polymerase - REV1 deoxyc | 94.39 | |
| KOG1473 | 1414 | consensus Nucleosome remodeling factor, subunit NU | 93.81 | |
| COG5275 | 276 | BRCT domain type II [General function prediction o | 93.53 | |
| KOG1246 | 904 | consensus DNA-binding protein jumonji/RBP2/SMCY, c | 91.84 | |
| COG5275 | 276 | BRCT domain type II [General function prediction o | 89.97 | |
| KOG0323 | 635 | consensus TFIIF-interacting CTD phosphatases, incl | 86.3 |
| >KOG1929 consensus Nucleotide excision repair factor NEF2, RAD4/CUT5 component [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-28 Score=302.72 Aligned_cols=658 Identities=16% Similarity=0.109 Sum_probs=451.9
Q ss_pred CCCcCCCCCCCCcEEEEeccCchhHHHHHHHHHhCCCEEEeccCCcceEEEeCCCCCCchHhHhhhcCCCeEecHHHHHH
Q 000734 1 MEIDCQSKPFIGVRFVLFGFDPINERQVRSKLIDGGGVDVGLYTQSCTHVIVDKIVFDDSVCVAARTDGKTLVTSLWVDH 80 (1324)
Q Consensus 1 mE~k~~S~lF~Gv~F~IsGfd~~~~keL~klI~~~GGtv~~~fss~VTHLIv~~~~sdt~ky~~A~~~gi~VVT~~WI~d 80 (1324)
|+...++..|.|+.|+++|+++..+.+|...+..+||.+..+|+..|||||++... +.+|.+|.+.+++|++..||..
T Consensus 1 ~q~~~~~~~~~~v~~~~t~i~p~~~~~l~~~~~~~Gg~~~~~~t~~~thli~~~~~--s~~~~~a~~~~~~~~~~~wi~~ 78 (811)
T KOG1929|consen 1 MQSTLYSKPMSGVTFSPTGINPIKREELSKKFIKLGGIDFKDFTPSVTHLIVGSVT--SSKYAAAHRFDIKVLDSSWIDY 78 (811)
T ss_pred CCCcccCcccCCceeccCcCCHHHHHHHHHHHHhcCceeeeccCCcCceeeccccc--ccchhhhhcCCCceecchHHHH
Confidence 77788999999999999999999999999999999999999999999999999977 7788999999999999999999
Q ss_pred HHHcCCCcCccccccccccccccccCCCceEEEEcCCCcccHHHHHHHHHHhCCEecCCccCCCceEEEEccCC-chHHH
Q 000734 81 SLDIGMPVDAASIMYRPLKDLNGIHGANSLVMCLTGYQRQDREDIMTLVRLMGSQFSKPLVANKVTHLICYKFE-GEKYE 159 (1324)
Q Consensus 81 C~~~gklLp~~~~l~~Pl~~~~pLp~FsG~vI~~SGf~~~er~~L~~LI~alGGk~s~~Lls~~~THLI~~~~~-g~Ky~ 159 (1324)
.|+.+.+ .-....+.|+.....+|.|.||.||++||...++..|..+|..+||++...| +..++||+..... +.||+
T Consensus 79 ~~d~~~~-~~e~~~~~~l~~~~~~p~~~~~~Vc~tgl~~~eK~ei~~~v~k~gg~~~~~L-~s~v~~~~~~~~~~~~kYe 156 (811)
T KOG1929|consen 79 IYDLWLL-NKEIRLLDPLRDTMKCPGFFGLKVCLTGLSGDEKSEIKILVPKHGGTLHRSL-SSDVNSLKILPEVKTEKYE 156 (811)
T ss_pred HHHHhhh-hccCccCccchhhhcCCcccceEEEecccchHHHHHHHHHhhhcccEEehhh-hhhhheeeeccccchHHHH
Confidence 9998876 3335667777777889999999999999999999999999999999999994 6666666666554 49999
Q ss_pred HHHcCCCCeEechhHHHHHHHhCCCCCCCCCCCCCCchhhhhhhhcCcHHHHHHhhhcccCCCCCCCCCCCCCccccCCC
Q 000734 160 LAKKIKSIKLVNHRWLEDCLRVWELLPEVNYDKSGYELETMEAEAKDSEEEIEVASLKQFGGRDVNKSPHNLNVGIINAH 239 (1324)
Q Consensus 160 ~Akkw~gI~IVs~eWL~DCI~~gkllpE~~Y~~~g~~~e~~~~e~~dSedeseda~~~q~~~r~~~~SP~~~k~G~~~~~ 239 (1324)
+|.+| +++||+.+|+++|+.....+++..|..... .. .+
T Consensus 157 ~al~w-n~~v~~~~w~~~s~~~~~~~~~~~~e~~~~-----~~-----------------------------~i------ 195 (811)
T KOG1929|consen 157 QALKW-NIPVVSDDWLFDSIEKTAVLETKPYEGAPV-----AE-----------------------------AI------ 195 (811)
T ss_pred HHHhh-CCccccHHHHhhhhcccccccccccccccc-----cc-----------------------------ee------
Confidence 99999 999999999999999999999999986320 00 00
Q ss_pred CCCCCccccccccCCCCCCCccccccCCCCccccCCCCCCCccccCCcccccc--ccccccccCC---CCCCCCCCCcCc
Q 000734 240 ESPKSTLEGQGLLVGSTIPEASSGIDNATDMLSTPSRVSRSHQISGFDNVNIT--EVNGCHYTGA---SRDNSHEKTPNS 314 (1324)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~ 314 (1324)
..|.....|. .++.|..-...+.++..++..+ .+|.|+-.+. ++....
T Consensus 196 ----------s~~~~~~~~~-----------~~~~~~s~t~~~~~~~~~~~~n~~~~p~~a~~~~~~~c~v~~s------ 248 (811)
T KOG1929|consen 196 ----------SGPIGSTLPK-----------EILDGDSRTANDTWSTSKVVTNIKVLPFQAKIGNLDDCLVETS------ 248 (811)
T ss_pred ----------ccCCcccccc-----------ccccccchhhhccccchhcccccccchhhhhccccccceeeec------
Confidence 0000000000 0000000001111111111111 1122222110 111110
Q ss_pred ccccccccccccccccccCCCCccccccccccCCCcccccccCC--CCCC-------------ccccccccccccccccc
Q 000734 315 AKVKSDLVPTSKNAEISYHSGSKFCSLNYSRKTPRKSILTMSSG--KVDN-------------DVLNIISSKVENAETRT 379 (1324)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-------------~~~~~~~~~~~~~~~~~ 379 (1324)
.+++++.++..|. ...+|+++..++++.+++++ .+++ -..|..++..+..+++
T Consensus 249 -------~~~~~~~s~l~r~----~~~g~~~~~~e~~e~~st~l~~~~~~~~~q~~d~~g~~~~~~n~~~~~~~~~s~~- 316 (811)
T KOG1929|consen 249 -------GTTSRNRSALSRL----SNNGGSLRFLERLEETSTSLLGDFDPNLEQLWDDNGLKQSFQNLGPSVLGPNSKR- 316 (811)
T ss_pred -------CCcccchhHhHHh----hhcccceeecccCccccchhhcccchHHHhhhhhccCcccccccCcccccccccc-
Confidence 0345666666665 77899999999999776544 5554 2356666666666666
Q ss_pred cccccccCCCCCccccc-cccccccccccccCcccccccccccccccccCCCCCCCCCCCCccccCCCCCCccCCC---C
Q 000734 380 VTACGEIPKRGGELCHE-EESIVLPQKRMSNSTGAGSKSQKMSHNAAECNPRSPINYKTPVSETKSSACHSFETGN---H 455 (1324)
Q Consensus 380 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 455 (1324)
..+..+++++. +|+ +++.+.++.....++.....|+. ..+++++ .-..|.+....+.|.-+.+.- +
T Consensus 317 ------~~~~~~~~~k~~sF~--~d~~~~~~~~~~~~~ll~q~~~~-a~L~~~~-~~~~~~~~~a~~~D~~~~is~i~e~ 386 (811)
T KOG1929|consen 317 ------RSKNSVLIFKNCSFI--IDFEKPGDHESPDKDLLRQYHGK-AYLFPSS-ARSYQKIRSAVPLDSLPDISSINEN 386 (811)
T ss_pred ------ccccccccccccccc--ccccccCCccccchhHHhhcCCc-eeecCcc-cccccccccccccCCCcccccccCC
Confidence 23355678888 666 89999999999999999999986 4444433 335667777766665554221 1
Q ss_pred ---------CCCCCCCCcceee---cCCC-CC-------------------CCCCCCCCCCCcccccccccccccccccc
Q 000734 456 ---------LSPGSNGHYTIET---ATPS-TA-------------------PNKKPLTPDLPSLKTVTSEALHSEGADRN 503 (1324)
Q Consensus 456 ---------~~~~~~~~~~~~~---~~~~-~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (1324)
......| ++++ .-++ .+ .-.-+-..|..+.+-+.-|..+.-.+..|
T Consensus 387 ~~~~~tp~~~~~~~~~--~~~~~~~~v~s~~~~~~~e~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~k~v~~ 464 (811)
T KOG1929|consen 387 QDSLGTPSFSESRELG--AKLLKPVDVPSVKPFFNTEKIESSSFENELLHHLLLPSTFLDVTLTEFAGVEVKHLLKNVTN 464 (811)
T ss_pred CCccccccccchhhhh--hhhcccccccccccccchhhhccccccccchhccccccccccceeeccccceeehhcccccc
Confidence 1111221 1111 0111 00 11112233666666665666666553333
Q ss_pred hHH--hhhccccccccCCCCCCCCCCccccccccchhccccccccCCC---ccccccceeccCCCCCCCCCCccccCccc
Q 000734 504 ALE--TCRGSKESTVASKTDNEDFGMGSVHLDGEAEDAQNLHQDLEGS---SAKNRFLVMDKSPRPVNIDSPQVGKDKLI 578 (1324)
Q Consensus 504 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (1324)
..- ....+..+. -++.+.+++.+.....+|.++-.... ....--..++......+..+++ +.--++
T Consensus 465 ~~~v~~~~~~~~~~--------~~~~~~vp~~~l~~~~e~~~~~~s~~~~~~~e~ln~~~~~~gas~~~~f~r-~~~~l~ 535 (811)
T KOG1929|consen 465 PFSVNCILDLSSST--------EDNLRPVPAAALSQPFENLTISNSQSAEAEREKLNNLANDLGASNVKTFTR-KSTTLL 535 (811)
T ss_pred hhHHHHHHHhhcCc--------hhhcCcchhhcccccccCceEEeeechHHHHHHHhHhhhhccccccceeee-cccEEe
Confidence 332 222222221 35668899999999999999887543 4444456677788878888886 332334
Q ss_pred ccchhhhhhhhhhcCCCCCcccccceEeeccCCCCCCccccchhhhccccccccCCCcccc-CCCCcchhhhhhhhhhhh
Q 000734 579 AKPIRKKMVAKKAFGSGHTTNRKGSIYSNKISSLSSPAVCLSREVERANQEKFSSTSELET-DPPNLSDEATKEMETTLV 657 (1324)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 657 (1324)
+.. .|+......-|-..++++.|.||..+.+.+.++++++.. +..+++.+..+.+... ..|..+...++.+..+
T Consensus 536 ~~~-~k~s~~~~~~kw~ip~vT~~wL~e~~rq~~~~~~e~~l~--~~st~~e~~~~~~~~~~~~P~~k~~t~s~sv~~-- 610 (811)
T KOG1929|consen 536 TTS-AKGSKYEIAGKWSIPIVTPDWLYECVRQNKGERNEGFLN--GNSTAKERPISPSIRFAVVPGKKPDTVSKSVVH-- 610 (811)
T ss_pred ccc-cccchhhhccccCCCccChhHHHhhccccCcccceeecc--ccccccccCcccccccccCCCCCcceeecceec--
Confidence 433 344444433344489999999999999999999999994 4888888998999988 8999999999999887
Q ss_pred cccCCCCCCCcccccCCcCCCCchhhHHHHHhhccccccccccccccccccc--ccC--------------CCccccccc
Q 000734 658 AKCGDNSGDGIKTMDDETEAPDEKYEIEFEKMLNNEKSEGVQSIHKEDTMMK--RVP--------------GVGHEAHDS 721 (1324)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--------------~~~~~~~~~ 721 (1324)
...++.-+.+..++..--++..+.|++++.++..++ ...++|...|.+-. .++ ++++-+.++
T Consensus 611 -~~~~~~~~s~~~v~~~g~~~~~e~h~~~d~~~~~~s-k~~~~~~~~d~~~~~~~le~~~~~~ps~~~~~v~~~~~~~a~ 688 (811)
T KOG1929|consen 611 -KEDTNKPKSVATVSGKGSGSVYEEHLLLDTEVKFDS-KIAKTPPGGDLRDVSDYLELPLFDRPSHDLSRVVLQQYDLAS 688 (811)
T ss_pred -ccccCCCcccccccccCCCccccccccccchhhhhh-hhhcCCCcccccccccceecccccCcCCChhhccceeeeecc
Confidence 566677888888888888999999988888774444 55777777764332 111 334468889
Q ss_pred ccccccCccccc-ccccccCccccCcccccccccccccc--cccccccCCCCCCCCccccCC
Q 000734 722 MVYGRDGITGKE-VMNAEVGMTVSGKRFDLDESTSKMDG--MKSKRKIRPSDKANGNVSADK 780 (1324)
Q Consensus 722 ~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~--~k~~~~~~~~~k~~~~~~~~~ 780 (1324)
+.+.|.+.+|.. .+-++++. |. .....+ .+.+-.+.++.+++|..++++
T Consensus 689 ~~~~r~~~~~~~s~~~~k~q~--t~--------~~~~~r~~~~e~~~~~~~~~~~~~~~~~g 740 (811)
T KOG1929|consen 689 SQRKRTALDGCVSEQVPKKQP--TA--------ISNPERIQRTEKVSHLNDRYAPGIDDKRG 740 (811)
T ss_pred ccccchhhhhhhhhhcCCcCc--cc--------ccCccccccccccchhhcccCCCcccccc
Confidence 999999999876 67777777 22 333333 344666778889999887755
|
|
| >KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription] | Back alignment and domain information |
|---|
| >KOG2043 consensus Signaling protein SWIFT and related BRCT domain proteins [Transcription; Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG3524 consensus Predicted guanine nucleotide exchange factor (PEBBLE) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0825 consensus PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A | Back alignment and domain information |
|---|
| >PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1 | Back alignment and domain information |
|---|
| >PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1 | Back alignment and domain information |
|---|
| >KOG3226 consensus DNA repair protein [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >smart00292 BRCT breast cancer carboxy-terminal domain | Back alignment and domain information |
|---|
| >smart00292 BRCT breast cancer carboxy-terminal domain | Back alignment and domain information |
|---|
| >cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain | Back alignment and domain information |
|---|
| >KOG1929 consensus Nucleotide excision repair factor NEF2, RAD4/CUT5 component [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A | Back alignment and domain information |
|---|
| >cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain | Back alignment and domain information |
|---|
| >KOG3226 consensus DNA repair protein [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription] | Back alignment and domain information |
|---|
| >KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG3548 consensus DNA damage checkpoint protein RHP9/CRB2/53BP1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG3548 consensus DNA damage checkpoint protein RHP9/CRB2/53BP1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG4299 consensus PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >PLN03122 Poly [ADP-ribose] polymerase; Provisional | Back alignment and domain information |
|---|
| >KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >PLN03123 poly [ADP-ribose] polymerase; Provisional | Back alignment and domain information |
|---|
| >KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription] | Back alignment and domain information |
|---|
| >KOG1512 consensus PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >smart00249 PHD PHD zinc finger | Back alignment and domain information |
|---|
| >KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG0383 consensus Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
| >KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only] | Back alignment and domain information |
|---|
| >PLN03122 Poly [ADP-ribose] polymerase; Provisional | Back alignment and domain information |
|---|
| >PLN03123 poly [ADP-ribose] polymerase; Provisional | Back alignment and domain information |
|---|
| >KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0957 consensus PHD finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG2043 consensus Signaling protein SWIFT and related BRCT domain proteins [Transcription; Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional | Back alignment and domain information |
|---|
| >PRK06063 DNA polymerase III subunit epsilon; Provisional | Back alignment and domain information |
|---|
| >PRK07956 ligA NAD-dependent DNA ligase LigA; Validated | Back alignment and domain information |
|---|
| >KOG3524 consensus Predicted guanine nucleotide exchange factor (PEBBLE) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG2481 consensus Protein required for normal rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional | Back alignment and domain information |
|---|
| >KOG0956 consensus PHD finger protein AF10 [General function prediction only] | Back alignment and domain information |
|---|
| >PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional | Back alignment and domain information |
|---|
| >PRK06195 DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR00575 dnlj DNA ligase, NAD-dependent | Back alignment and domain information |
|---|
| >COG5141 PHD zinc finger-containing protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0954 consensus PHD finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription] | Back alignment and domain information |
|---|
| >COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >COG5163 NOP7 Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PRK07956 ligA NAD-dependent DNA ligase LigA; Validated | Back alignment and domain information |
|---|
| >PRK06063 DNA polymerase III subunit epsilon; Provisional | Back alignment and domain information |
|---|
| >COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK06195 DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional | Back alignment and domain information |
|---|
| >KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >TIGR00575 dnlj DNA ligase, NAD-dependent | Back alignment and domain information |
|---|
| >PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A | Back alignment and domain information |
|---|
| >KOG2481 consensus Protein required for normal rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG5163 NOP7 Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >KOG2093 consensus Translesion DNA polymerase - REV1 deoxycytidyl transferase [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
| >COG5275 BRCT domain type II [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only] | Back alignment and domain information |
|---|
| >COG5275 BRCT domain type II [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1324 | ||||
| 3al2_A | 235 | Crystal Structure Of Topbp1 Brct78 Length = 235 | 2e-10 | ||
| 3al3_A | 235 | Crystal Structure Of Topbp1 Brct78-Bach1 Peptide Co | 7e-10 | ||
| 2r1z_A | 209 | Crystal Structure Of The Bard1 Brct Repeat Length = | 1e-05 | ||
| 2nte_A | 210 | Crystal Structure Of The Bard1 Brct Domains Length | 1e-05 | ||
| 3fa2_A | 218 | Crystal Structure Of The Brca1 Associated Ring Doma | 1e-05 | ||
| 3zvz_B | 57 | Phd Finger Of Human Uhrf1 Length = 57 | 2e-05 | ||
| 3ask_A | 226 | Structure Of Uhrf1 In Complex With Histone Tail Len | 2e-05 | ||
| 3t6r_A | 72 | Structure Of Uhrf1 In Complex With Unmodified H3 N- | 2e-05 | ||
| 3sou_A | 70 | Structure Of Uhrf1 Phd Finger In Complex With Histo | 3e-05 | ||
| 2lgg_A | 69 | Structure Of Phd Domain Of Uhrf1 In Complex With H3 | 3e-05 | ||
| 3shb_A | 77 | Crystal Structure Of Phd Domain Of Uhrf1 Length = 7 | 3e-05 | ||
| 3zvy_A | 72 | Phd Finger Of Human Uhrf1 In Complex With Unmodifie | 3e-05 | ||
| 4gy5_A | 241 | Crystal Structure Of The Tandem Tudor Domain And Pl | 2e-04 | ||
| 3sqd_A | 219 | Crystal Structure Of Human Ptip Brct56-Gamma H2ax C | 4e-04 | ||
| 2xnh_A | 287 | Structure And Function Of The Rad9-Binding Region O | 5e-04 | ||
| 2e6r_A | 92 | Solution Structure Of The Phd Domain In Smcy Protei | 5e-04 | ||
| 3olc_X | 298 | Crystal Structure Of The N-Terminal Region Of Topbp | 5e-04 | ||
| 2xnk_A | 292 | Structure And Function Of The Rad9-Binding Region O | 6e-04 |
| >pdb|3AL2|A Chain A, Crystal Structure Of Topbp1 Brct78 Length = 235 | Back alignment and structure |
|
| >pdb|3AL3|A Chain A, Crystal Structure Of Topbp1 Brct78-Bach1 Peptide Complex Length = 235 | Back alignment and structure |
| >pdb|2R1Z|A Chain A, Crystal Structure Of The Bard1 Brct Repeat Length = 209 | Back alignment and structure |
| >pdb|2NTE|A Chain A, Crystal Structure Of The Bard1 Brct Domains Length = 210 | Back alignment and structure |
| >pdb|3FA2|A Chain A, Crystal Structure Of The Brca1 Associated Ring Domain (Bard1) Tandem Brct Domains Length = 218 | Back alignment and structure |
| >pdb|3ZVZ|B Chain B, Phd Finger Of Human Uhrf1 Length = 57 | Back alignment and structure |
| >pdb|3ASK|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail Length = 226 | Back alignment and structure |
| >pdb|3T6R|A Chain A, Structure Of Uhrf1 In Complex With Unmodified H3 N-Terminal Tail Length = 72 | Back alignment and structure |
| >pdb|3SOU|A Chain A, Structure Of Uhrf1 Phd Finger In Complex With Histone H3 1-9 Peptide Length = 70 | Back alignment and structure |
| >pdb|2LGG|A Chain A, Structure Of Phd Domain Of Uhrf1 In Complex With H3 Peptide Length = 69 | Back alignment and structure |
| >pdb|3SHB|A Chain A, Crystal Structure Of Phd Domain Of Uhrf1 Length = 77 | Back alignment and structure |
| >pdb|3ZVY|A Chain A, Phd Finger Of Human Uhrf1 In Complex With Unmodified Histone H3 N-Terminal Tail Length = 72 | Back alignment and structure |
| >pdb|4GY5|A Chain A, Crystal Structure Of The Tandem Tudor Domain And Plant Homeodomain Of Uhrf1 With Histone H3k9me3 Length = 241 | Back alignment and structure |
| >pdb|3SQD|A Chain A, Crystal Structure Of Human Ptip Brct56-Gamma H2ax Complex Length = 219 | Back alignment and structure |
| >pdb|2XNH|A Chain A, Structure And Function Of The Rad9-Binding Region Of The Dna Damage Checkpoint Adaptor Topbp1 Length = 287 | Back alignment and structure |
| >pdb|2E6R|A Chain A, Solution Structure Of The Phd Domain In Smcy Protein Length = 92 | Back alignment and structure |
| >pdb|3OLC|X Chain X, Crystal Structure Of The N-Terminal Region Of Topbp1 Length = 298 | Back alignment and structure |
| >pdb|2XNK|A Chain A, Structure And Function Of The Rad9-Binding Region Of The Dna Damage Checkpoint Adaptor Topbp1 Length = 292 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A* Length = 235 | Back alignment and structure |
|---|
Score = 160 bits (406), Expect = 1e-44
Identities = 54/222 (24%), Positives = 98/222 (44%), Gaps = 21/222 (9%)
Query: 1008 LNKLKDEPIWFILSG-HRLQRKEFQVVIRHLKGRLCRDSHQWSYQATHFIAPEIRRTEKF 1066
L LK + I F LS + +R ++ +I L G + + + TH + R EK+
Sbjct: 3 LGSLKKQYI-FQLSSLNPQERIDYCHLIEKLGGLVI-EKQCFDPTCTHIVVGHPLRNEKY 60
Query: 1067 FAAAASGRWILKTDYLSACSQAGKFLLEEPYEWHKN-------GLSEDGAINLEAPRKWR 1119
A+ A+G+W+L YL AC AG F+ EE YEW + G++ A +WR
Sbjct: 61 LASVAAGKWVLHRSYLEACRTAGHFVQEEDYEWGSSSILDVLTGINVQQRRLALAAMRWR 120
Query: 1120 LLRERTG-----HGAFHGMRIIVYGDCIAPPLDTLKRVVKAGDGNILA--TSPPYTRFLN 1172
++ GAF G ++I++ D KR++++G +L + P + +
Sbjct: 121 KKIQQRQESGIVEGAFSGWKVILHVDQ--SREAGFKRLLQSGGAKVLPGHSVPLFKEATH 178
Query: 1173 SGVDFAVVSPGMPRVDLWVQEFLKHEIPCVVADYLVEFVCKP 1214
D + P V + E + C+ +Y+ +++ +
Sbjct: 179 LFSDLNKLKPDDSGV--NIAEAAAQNVYCLRTEYIADYLMQE 218
|
| >3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A* Length = 235 | Back alignment and structure |
|---|
| >3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A* Length = 235 | Back alignment and structure |
|---|
| >3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A* Length = 298 | Back alignment and structure |
|---|
| >2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A Length = 210 | Back alignment and structure |
|---|
| >2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A Length = 210 | Back alignment and structure |
|---|
| >2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A Length = 210 | Back alignment and structure |
|---|
| >3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A* Length = 220 | Back alignment and structure |
|---|
| >3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A* Length = 220 | Back alignment and structure |
|---|
| >3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens} Length = 219 | Back alignment and structure |
|---|
| >3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens} Length = 219 | Back alignment and structure |
|---|
| >3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens} Length = 219 | Back alignment and structure |
|---|
| >1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3 Length = 229 | Back alignment and structure |
|---|
| >1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3 Length = 229 | Back alignment and structure |
|---|
| >2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A Length = 209 | Back alignment and structure |
|---|
| >2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A Length = 209 | Back alignment and structure |
|---|
| >2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A Length = 209 | Back alignment and structure |
|---|
| >1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A Length = 214 | Back alignment and structure |
|---|
| >1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A Length = 214 | Back alignment and structure |
|---|
| >1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A Length = 214 | Back alignment and structure |
|---|
| >2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 129 | Back alignment and structure |
|---|
| >2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 129 | Back alignment and structure |
|---|
| >3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A* Length = 199 | Back alignment and structure |
|---|
| >3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A* Length = 199 | Back alignment and structure |
|---|
| >3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A* Length = 199 | Back alignment and structure |
|---|
| >3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens} Length = 112 | Back alignment and structure |
|---|
| >3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens} Length = 112 | Back alignment and structure |
|---|
| >3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens} Length = 112 | Back alignment and structure |
|---|
| >1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B Length = 259 | Back alignment and structure |
|---|
| >1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B Length = 259 | Back alignment and structure |
|---|
| >2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens} Length = 97 | Back alignment and structure |
|---|
| >2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 109 | Back alignment and structure |
|---|
| >2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 109 | Back alignment and structure |
|---|
| >1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2 Length = 51 | Back alignment and structure |
|---|
| >2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 92 | Back alignment and structure |
|---|
| >1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5 Length = 132 | Back alignment and structure |
|---|
| >1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5 Length = 132 | Back alignment and structure |
|---|
| >3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B Length = 70 | Back alignment and structure |
|---|
| >2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 77 | Back alignment and structure |
|---|
| >3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens} Length = 77 | Back alignment and structure |
|---|
| >2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Length = 114 | Back alignment and structure |
|---|
| >2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens} Length = 60 | Back alignment and structure |
|---|
| >2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Length = 111 | Back alignment and structure |
|---|
| >2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Length = 111 | Back alignment and structure |
|---|
| >1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A Length = 61 | Back alignment and structure |
|---|
| >3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens} Length = 226 | Back alignment and structure |
|---|
| >3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Length = 112 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 56 | Back alignment and structure |
|---|
| >3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A* Length = 107 | Back alignment and structure |
|---|
| >1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A Length = 66 | Back alignment and structure |
|---|
| >2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Length = 75 | Back alignment and structure |
|---|
| >1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2 Length = 88 | Back alignment and structure |
|---|
| >2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens} Length = 61 | Back alignment and structure |
|---|
| >2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} Length = 71 | Back alignment and structure |
|---|
| >2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens} Length = 88 | Back alignment and structure |
|---|
| >2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus} Length = 66 | Back alignment and structure |
|---|
| >1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 Length = 88 | Back alignment and structure |
|---|
| >3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe} Length = 372 | Back alignment and structure |
|---|
| >3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe} Length = 442 | Back alignment and structure |
|---|
| >3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} PDB: 3pc8_A* 3qvg_B* 1cdz_A Length = 104 | Back alignment and structure |
|---|
| >3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} PDB: 3pc8_A* 3qvg_B* 1cdz_A Length = 104 | Back alignment and structure |
|---|
| >2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A* Length = 241 | Back alignment and structure |
|---|
| >2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens} Length = 106 | Back alignment and structure |
|---|
| >3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A* Length = 263 | Back alignment and structure |
|---|
| >3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A* Length = 263 | Back alignment and structure |
|---|
| >2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} Length = 189 | Back alignment and structure |
|---|
| >2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* Length = 52 | Back alignment and structure |
|---|
| >2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus} Length = 62 | Back alignment and structure |
|---|
| >3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} Length = 68 | Back alignment and structure |
|---|
| >2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A* Length = 90 | Back alignment and structure |
|---|
| >3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A Length = 184 | Back alignment and structure |
|---|
| >1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 70 | Back alignment and structure |
|---|
| >1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 72 | Back alignment and structure |
|---|
| >3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} Length = 75 | Back alignment and structure |
|---|
| >3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} Length = 52 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1324 | ||||
| d1t15a1 | 109 | c.15.1.3 (A:1649-1757) Breast cancer associated pr | 1e-15 | |
| d1t15a1 | 109 | c.15.1.3 (A:1649-1757) Breast cancer associated pr | 3e-11 | |
| d1f62a_ | 51 | g.50.1.2 (A:) Williams-Beuren syndrome transcripti | 1e-13 | |
| d1weea_ | 72 | g.50.1.2 (A:) PHD finger protein At1g33420 {Thale | 2e-11 | |
| d1wf6a_ | 132 | c.15.1.5 (A:) DNA topoisomerase II binding protein | 5e-11 | |
| d1wf6a_ | 132 | c.15.1.5 (A:) DNA topoisomerase II binding protein | 6e-06 | |
| d1wf6a_ | 132 | c.15.1.5 (A:) DNA topoisomerase II binding protein | 2e-05 | |
| d1we9a_ | 64 | g.50.1.2 (A:) PHD finger protein At5g26210 {Thale | 5e-11 | |
| d1fp0a1 | 70 | g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF- | 9e-11 | |
| d1cdza_ | 96 | c.15.1.1 (A:) DNA-repair protein XRCC1 {Human (Hom | 5e-10 | |
| d1cdza_ | 96 | c.15.1.1 (A:) DNA-repair protein XRCC1 {Human (Hom | 6e-05 | |
| d1kzyc1 | 153 | c.15.1.4 (C:1714-1866) 53BP1 {Human (Homo sapiens) | 1e-09 | |
| d1kzyc1 | 153 | c.15.1.4 (C:1714-1866) 53BP1 {Human (Homo sapiens) | 4e-06 | |
| d1mm2a_ | 61 | g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens | 1e-09 | |
| d1t15a2 | 102 | c.15.1.3 (A:1758-1859) Breast cancer associated pr | 2e-09 | |
| d1weva_ | 88 | g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus mu | 6e-08 | |
| d1wema_ | 76 | g.50.1.2 (A:) Death associated transcription facto | 1e-07 | |
| d1in1a_ | 88 | c.15.1.2 (A:) DNA ligase III alpha {Human (Homo sa | 2e-06 | |
| d2pnxa1 | 51 | g.50.1.2 (A:195-245) Inhibitor of growth protein 4 | 3e-06 | |
| d1wesa_ | 71 | g.50.1.2 (A:) PHD Inhibitor of growth protein 2, I | 9e-05 | |
| d1wewa_ | 78 | g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale c | 3e-04 | |
| d1wepa_ | 79 | g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus mus | 8e-04 |
| >d1t15a1 c.15.1.3 (A:1649-1757) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 109 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: BRCT domain superfamily: BRCT domain family: BRCT domain domain: Breast cancer associated protein, BRCA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.0 bits (176), Expect = 1e-15
Identities = 22/111 (19%), Positives = 50/111 (45%), Gaps = 10/111 (9%)
Query: 1018 FILSGHRLQRKEFQVVIRHLKGRLCRDSHQWSYQATHFIAPE-----IRRTEKFFAAAAS 1072
++SG L +EF +V + + ++ + + TH + RT K+F A
Sbjct: 4 MVVSG--LTPEEFMLVYKFARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAG 61
Query: 1073 GRWILKTDYLSACSQAGKFLLEEPYEWHKNGLSEDGAINLEAPRKWRLLRE 1123
G+W++ +++ + K L E +E + ++ N + P++ R ++
Sbjct: 62 GKWVVSYFWVTQSIKERKMLNEHDFEVRGDVVNGR---NHQGPKRARESQD 109
|
| >d1t15a1 c.15.1.3 (A:1649-1757) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 109 | Back information, alignment and structure |
|---|
| >d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Length = 51 | Back information, alignment and structure |
|---|
| >d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 72 | Back information, alignment and structure |
|---|
| >d1wf6a_ c.15.1.5 (A:) DNA topoisomerase II binding protein 1, TopBP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 132 | Back information, alignment and structure |
|---|
| >d1wf6a_ c.15.1.5 (A:) DNA topoisomerase II binding protein 1, TopBP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 132 | Back information, alignment and structure |
|---|
| >d1wf6a_ c.15.1.5 (A:) DNA topoisomerase II binding protein 1, TopBP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 132 | Back information, alignment and structure |
|---|
| >d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64 | Back information, alignment and structure |
|---|
| >d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Length = 70 | Back information, alignment and structure |
|---|
| >d1cdza_ c.15.1.1 (A:) DNA-repair protein XRCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 96 | Back information, alignment and structure |
|---|
| >d1cdza_ c.15.1.1 (A:) DNA-repair protein XRCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 96 | Back information, alignment and structure |
|---|
| >d1kzyc1 c.15.1.4 (C:1714-1866) 53BP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 153 | Back information, alignment and structure |
|---|
| >d1kzyc1 c.15.1.4 (C:1714-1866) 53BP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 153 | Back information, alignment and structure |
|---|
| >d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Length = 61 | Back information, alignment and structure |
|---|
| >d1t15a2 c.15.1.3 (A:1758-1859) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 | Back information, alignment and structure |
|---|
| >d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88 | Back information, alignment and structure |
|---|
| >d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 76 | Back information, alignment and structure |
|---|
| >d1in1a_ c.15.1.2 (A:) DNA ligase III alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 88 | Back information, alignment and structure |
|---|
| >d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Length = 51 | Back information, alignment and structure |
|---|
| >d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 71 | Back information, alignment and structure |
|---|
| >d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78 | Back information, alignment and structure |
|---|
| >d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Length = 79 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1324 | |||
| d1t15a1 | 109 | Breast cancer associated protein, BRCA1 {Human (Ho | 99.87 | |
| d1wf6a_ | 132 | DNA topoisomerase II binding protein 1, TopBP1 {Hu | 99.73 | |
| d1wf6a_ | 132 | DNA topoisomerase II binding protein 1, TopBP1 {Hu | 99.72 | |
| d1cdza_ | 96 | DNA-repair protein XRCC1 {Human (Homo sapiens) [Ta | 99.67 | |
| d1cdza_ | 96 | DNA-repair protein XRCC1 {Human (Homo sapiens) [Ta | 99.6 | |
| d1t15a1 | 109 | Breast cancer associated protein, BRCA1 {Human (Ho | 99.6 | |
| d1kzyc1 | 153 | 53BP1 {Human (Homo sapiens) [TaxId: 9606]} | 99.54 | |
| d1t15a2 | 102 | Breast cancer associated protein, BRCA1 {Human (Ho | 99.53 | |
| d1t15a2 | 102 | Breast cancer associated protein, BRCA1 {Human (Ho | 99.36 | |
| d1in1a_ | 88 | DNA ligase III alpha {Human (Homo sapiens) [TaxId: | 99.28 | |
| d1l7ba_ | 92 | NAD+-dependent DNA ligase, domain 4 {Thermus therm | 99.27 | |
| d1in1a_ | 88 | DNA ligase III alpha {Human (Homo sapiens) [TaxId: | 99.22 | |
| d1kzyc1 | 153 | 53BP1 {Human (Homo sapiens) [TaxId: 9606]} | 99.21 | |
| d1fp0a1 | 70 | Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo | 99.19 | |
| d1f62a_ | 51 | Williams-Beuren syndrome transcription factor, WST | 99.11 | |
| d1mm2a_ | 61 | Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 | 99.07 | |
| d1weva_ | 88 | PHD finger protein 22 {Mouse (Mus musculus) [TaxId | 98.93 | |
| d1wesa_ | 71 | PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu | 98.8 | |
| d1l7ba_ | 92 | NAD+-dependent DNA ligase, domain 4 {Thermus therm | 98.79 | |
| d1weea_ | 72 | PHD finger protein At1g33420 {Thale cress (Arabido | 98.56 | |
| d1l0ba2 | 97 | Breast cancer associated protein, BRCA1 {Rat (Ratt | 98.5 | |
| d2pnxa1 | 51 | Inhibitor of growth protein 4, Ing4 {Homo sapiens | 98.37 | |
| d1we9a_ | 64 | PHD finger protein At5g26210 {Thale cress (Arabido | 98.34 | |
| d1wewa_ | 78 | Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop | 98.18 | |
| d1wema_ | 76 | Death associated transcription factor 1, Datf1 (DI | 98.17 | |
| d1l0ba2 | 97 | Breast cancer associated protein, BRCA1 {Rat (Ratt | 98.13 | |
| d1wepa_ | 79 | PHD finger protein 8 {Mouse (Mus musculus) [TaxId: | 98.09 | |
| d1kzyc2 | 106 | 53BP1 {Human (Homo sapiens) [TaxId: 9606]} | 97.83 | |
| d1kzyc2 | 106 | 53BP1 {Human (Homo sapiens) [TaxId: 9606]} | 97.36 | |
| d1weqa_ | 85 | PHD finger protein 7 (NYD-SP6) {Mouse (Mus musculu | 85.63 | |
| d1v87a_ | 114 | Deltex protein 2 RING-H2 domain {Mouse (Mus muscul | 83.9 | |
| d1li4a2 | 267 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 83.28 |
| >d1t15a1 c.15.1.3 (A:1649-1757) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: BRCT domain superfamily: BRCT domain family: BRCT domain domain: Breast cancer associated protein, BRCA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=2e-22 Score=148.65 Aligned_cols=101 Identities=20% Similarity=0.302 Sum_probs=89.0
Q ss_pred EEEEEECCH-HHHHHHHHHHHHHCCEEEECCCCCCCCCCEEECCC-----CCCCHHHHHHHHCCCEEECHHHHHHHHHCC
Q ss_conf 399980676-87999999999838889510886578532999099-----874099999983299263266899975229
Q 000734 1016 IWFILSGHR-LQRKEFQVVIRHLKGRLCRDSHQWSYQATHFIAPE-----IRRTEKFFAAAASGRWILKTDYLSACSQAG 1089 (1324)
Q Consensus 1016 ~villSGLs-~ek~~L~k~Ik~LGG~V~~d~~~~s~~~THLI~~~-----~kRT~K~L~AIA~GkWIVsp~WI~dS~kaG 1089 (1324)
+.|++|||+ +++..+.++++.+||.+ ...|++.|||||+.. +.||+|||.|++.|+|||+++||.+|++++
T Consensus 2 ~~i~~SGl~~~e~~~l~~~i~~~Gg~~---~~~~~~~~THlI~~~~~~~~~~rt~K~l~a~~~g~~IV~~~Wl~~c~~~~ 78 (109)
T d1t15a1 2 MSMVVSGLTPEEFMLVYKFARKHHITL---TNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIKER 78 (109)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHHTCEE---CSSCCTTCCEEEECBCTTSEECCBHHHHHHHHTTCEEEETHHHHHHHHTT
T ss_pred EEEEECCCCHHHHHHHHHHHHHCCCEE---EEEECCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHC
T ss_conf 799987999799999999999869799---86726884289994376325675599999998798336679999999938
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 887898840137998955643433104568989
Q 000734 1090 KFLLEEPYEWHKNGLSEDGAINLEAPRKWRLLR 1122 (1324)
Q Consensus 1090 kfLdEe~YEl~d~~~~~d~~~~~~aprrwRl~~ 1122 (1324)
+++||++|++.++.. +.....+|+++|+.+
T Consensus 79 ~~l~e~~y~v~~~~~---~~~~~~gp~r~R~~~ 108 (109)
T d1t15a1 79 KMLNEHDFEVRGDVV---NGRNHQGPKRARESQ 108 (109)
T ss_dssp SCCCGGGGBCCEETT---TBTTCCHHHHHHTCT
T ss_pred CCCCCHHEEEECCCC---CCCCCCCCHHHHHCC
T ss_conf 968814258714667---885766641777644
|
| >d1wf6a_ c.15.1.5 (A:) DNA topoisomerase II binding protein 1, TopBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wf6a_ c.15.1.5 (A:) DNA topoisomerase II binding protein 1, TopBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1cdza_ c.15.1.1 (A:) DNA-repair protein XRCC1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1cdza_ c.15.1.1 (A:) DNA-repair protein XRCC1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1t15a1 c.15.1.3 (A:1649-1757) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1kzyc1 c.15.1.4 (C:1714-1866) 53BP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1t15a2 c.15.1.3 (A:1758-1859) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1t15a2 c.15.1.3 (A:1758-1859) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1in1a_ c.15.1.2 (A:) DNA ligase III alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1l7ba_ c.15.1.2 (A:) NAD+-dependent DNA ligase, domain 4 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1in1a_ c.15.1.2 (A:) DNA ligase III alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1kzyc1 c.15.1.4 (C:1714-1866) 53BP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1l7ba_ c.15.1.2 (A:) NAD+-dependent DNA ligase, domain 4 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1l0ba2 c.15.1.3 (A:1705-1801) Breast cancer associated protein, BRCA1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1l0ba2 c.15.1.3 (A:1705-1801) Breast cancer associated protein, BRCA1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1kzyc2 c.15.1.4 (C:1867-1972) 53BP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1kzyc2 c.15.1.4 (C:1867-1972) 53BP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1weqa_ g.50.1.2 (A:) PHD finger protein 7 (NYD-SP6) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1li4a2 c.23.12.3 (A:3-189,A:353-432) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|