Citrus Sinensis ID: 000746
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1303 | 2.2.26 [Sep-21-2011] | |||||||
| Q9C8H0 | 1495 | ABC transporter C family | yes | no | 0.970 | 0.845 | 0.756 | 0.0 | |
| Q9C8H1 | 1495 | ABC transporter C family | no | no | 0.970 | 0.845 | 0.717 | 0.0 | |
| Q9C8G9 | 1622 | ABC transporter C family | no | no | 0.972 | 0.781 | 0.673 | 0.0 | |
| Q42093 | 1623 | ABC transporter C family | no | no | 0.970 | 0.778 | 0.681 | 0.0 | |
| Q28689 | 1564 | Canalicular multispecific | no | no | 0.788 | 0.656 | 0.340 | 0.0 | |
| O35379 | 1528 | Multidrug resistance-asso | yes | no | 0.868 | 0.740 | 0.325 | 0.0 | |
| Q8CG09 | 1532 | Multidrug resistance-asso | no | no | 0.825 | 0.701 | 0.329 | 0.0 | |
| B2RX12 | 1523 | Canalicular multispecific | no | no | 0.821 | 0.703 | 0.328 | 0.0 | |
| O88563 | 1522 | Canalicular multispecific | yes | no | 0.818 | 0.701 | 0.328 | 0.0 | |
| Q92887 | 1545 | Canalicular multispecific | yes | no | 0.788 | 0.664 | 0.336 | 0.0 |
| >sp|Q9C8H0|AB12C_ARATH ABC transporter C family member 12 OS=Arabidopsis thaliana GN=ABCC12 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 2020 bits (5234), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 983/1300 (75%), Positives = 1123/1300 (86%), Gaps = 36/1300 (2%)
Query: 27 MASGPLDWYCRPVANGTWAKTVDSTFGAYTTCAVDSLVISISHSVLLGLCIFRIWLMNKN 86
M L+WYC+PVA+G W K VD FGAYT CA+DSLV+ +SH VLLGLC +RIW++ N
Sbjct: 1 MGFEALNWYCKPVADGFWEKAVDGAFGAYTPCAIDSLVMLVSHFVLLGLCFYRIWIIFHN 60
Query: 87 SKARRYRLSSNCYNYMLGLLACYCTAEPLLRLVMGISIFNLDGETSFAPFEMVSLIIEAL 146
+KA+ Y L YN +LGLLACYC EP+LRLVMGIS+F++D ET F PFE+ SL++EA
Sbjct: 61 TKAQIYVLRKKYYNCVLGLLACYCVVEPVLRLVMGISLFDMDEETDFPPFEVASLMVEAF 120
Query: 147 AWCSMLIMICLETKFYIREFRWYVRFGVIYVLVGDAVILNLIIPMRDYYSRITLYLYISM 206
AW SML++I LETK Y++EFRWYVRFGV+YVLV DAV+L+L++P+++ +R LYL+IS
Sbjct: 121 AWFSMLVLIGLETKQYVKEFRWYVRFGVLYVLVADAVLLDLVLPLKNSINRTALYLFISS 180
Query: 207 VFCQALFGILILVYIPNLDPYPGYTIMQPEFVDNAEYEALPGGEHVCPERNASILSRTSF 266
QALFGIL+L+YIP LDPYPGY I+ E +DN EY+AL GGEH+CPER+ASI SR F
Sbjct: 181 RCSQALFGILLLIYIPELDPYPGYHIVNNEPLDNVEYDALRGGEHICPERHASIFSRIYF 240
Query: 267 GWMTPLLQLGYKKPITEKDVWKLDTWDQTEILIEKFHRCWIEESQRSKPWLLRALNNSFG 326
GW+TPL+QLGY+KPITEKDVW+LD WDQTE LI++F RCW EES+R KPWLLRALNNS G
Sbjct: 241 GWITPLMQLGYRKPITEKDVWQLDKWDQTETLIKRFQRCWTEESRRPKPWLLRALNNSLG 300
Query: 327 GRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPAWIGYIYAFLIFVGVSFGVLTEAQ 386
GRFWL G+FKIGNDLSQFVGPV+L+HLL+SMQ GDPAW+GY+YAF+IFVGV+ GVL EAQ
Sbjct: 301 GRFWLAGIFKIGNDLSQFVGPVILSHLLRSMQEGDPAWVGYVYAFIIFVGVTLGVLCEAQ 360
Query: 387 YFQNVWRVGFRLRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQLHG 446
YFQNVWRVGFRLRSTLVAAIF K+LRLTHEARK F SGKVTNMITTDANALQQISQQLHG
Sbjct: 361 YFQNVWRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQISQQLHG 420
Query: 447 LWSAPFRITLSMVLLYQQLGVASLLGSLMLVLMVPLQTFIISKMRKLTKEGLQWTDRRVS 506
LWSAPFRI +SM+LLYQQLGVASL GSL+L L++PLQT IISKMRKLTKEGLQWTD+RV
Sbjct: 421 LWSAPFRIIVSMILLYQQLGVASLFGSLILFLLIPLQTLIISKMRKLTKEGLQWTDKRVG 480
Query: 507 LTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSIPVVVTVV 566
+TNEIL++MDTVKCYAWEKSF+SR+Q IR++ELSWFRKAQ LSAFNSFILNSIPVVVTVV
Sbjct: 481 ITNEILSSMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIPVVVTVV 540
Query: 567 SFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEER 626
SFG F LLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQR+EELLL+EER
Sbjct: 541 SFGVFVLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRIEELLLSEER 600
Query: 627 ILMPNPPLEPELPAVSIKNGNFSWDSKS--PTLSNINLDIPVGSLVAIVGGTGEGKTSLV 684
IL NPPL+P PA+SIKNG FSWDSK+ PTLS+INL+IPVG+LVAIVGGTGEGKTSL+
Sbjct: 601 ILAQNPPLQPGTPAISIKNGYFSWDSKTTKPTLSDINLEIPVGTLVAIVGGTGEGKTSLI 660
Query: 685 SAMLGELPPLKDASVVIRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQ 744
SAMLGEL + SVVIRG+VAYVPQ+SWIFNAT+R+NILFGS+F+ +YW+ +D +ALQ
Sbjct: 661 SAMLGELSHAETTSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDATALQ 720
Query: 745 HDLDLLPDRDLTEIGERGVNISGGQKQRVSMARA------------------------VF 780
HDLDLLP RDLTEIGERGVNISGGQKQRVSMARA VF
Sbjct: 721 HDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVAHQVF 780
Query: 781 NSCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLMENA 840
+SC+K+ELRGKTR+LVTNQLHFLP +D+IILVSEGMIKEEG+F ELSK G LF+KLMENA
Sbjct: 781 DSCMKDELRGKTRVLVTNQLHFLPLMDKIILVSEGMIKEEGTFVELSKSGILFKKLMENA 840
Query: 841 GKMEEMEEREEKDDSINSNQE-VSKPVANRAVQVNEFPKNESYTKKGKRGRSVLVKQEER 899
GKM+ +E +N+N E + K V V+E +N TK+GKR RSVL+KQEER
Sbjct: 841 GKMDATQE-------VNTNDENILKLGPTVTVDVSE--RNLGSTKQGKRRRSVLIKQEER 891
Query: 900 ETGIVSGSVLTRYKNALGGPWVIMILFACYLSTEVLRISSSTWLSFWTDQSTSKNYNPGF 959
ETGI+S +VL RYK A+GG WV+MIL ACYL+TEVLR+SSSTWLS WTDQSTSKNY+PGF
Sbjct: 892 ETGIISWNVLMRYKEAVGGLWVVMILLACYLATEVLRVSSSTWLSIWTDQSTSKNYSPGF 951
Query: 960 YIAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILRAPMLFFHTNPIGRVIN 1019
YI +Y +L FGQV VT NS+WLI SSL AA+RLHD+ML+SILRAPMLFFHTNP GRVIN
Sbjct: 952 YIVVYALLGFGQVAVTFTNSFWLITSSLHAARRLHDAMLSSILRAPMLFFHTNPTGRVIN 1011
Query: 1020 RFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLILFYAAYLYYQ 1079
RFS+D+GDIDRNVA+ +NMFMNQLWQLLSTF LIG VSTISLWAIMPLLILFYAAYLYYQ
Sbjct: 1012 RFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTISLWAIMPLLILFYAAYLYYQ 1071
Query: 1080 STAREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTS 1139
ST+REV+RLDS+TRSP+YAQFGEALNGLS+IRA+KAYDRMAKINGKSMDNNIRFTLANTS
Sbjct: 1072 STSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTS 1131
Query: 1140 SNRWLTIRLETLGGIMIWLIATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLR 1199
SNRWLTIRLETLGG+MIWL ATFAV+QNG NQ FASTMGLLLSYTLNIT+LLSGVLR
Sbjct: 1132 SNRWLTIRLETLGGVMIWLTATFAVLQNGNTNNQAGFASTMGLLLSYTLNITSLLSGVLR 1191
Query: 1200 QASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSGSIKFEDVVLRYRPELPPV 1259
QASRAENSLN+VERVG YIDLPSEA ++E+NRP WPS GSIKFEDV LRYRP LPPV
Sbjct: 1192 QASRAENSLNSVERVGNYIDLPSEATDIIENNRPVCGWPSGGSIKFEDVHLRYRPGLPPV 1251
Query: 1260 LHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERG 1299
LHGL+F VSPSEKVG+VGRTGAGKSSMLNALFRIVE+E+G
Sbjct: 1252 LHGLTFFVSPSEKVGVVGRTGAGKSSMLNALFRIVEVEKG 1291
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 6EC: .EC: 3EC: .EC: 4EC: 4 |
| >sp|Q9C8H1|AB11C_ARATH ABC transporter C family member 11 OS=Arabidopsis thaliana GN=ABCC11 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 1928 bits (4994), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 933/1300 (71%), Positives = 1090/1300 (83%), Gaps = 36/1300 (2%)
Query: 27 MASGPLDWYCRPVANGTWAKTVDSTFGAYTTCAVDSLVISISHSVLLGLCIFRIWLMNKN 86
M L+WYC+P+A G W KT D FGAYT CA+DSLV+ +S+SVLLGLC +RIW+ N
Sbjct: 1 MGFEALNWYCKPIAEGFWEKTPDGAFGAYTPCAIDSLVMIVSNSVLLGLCFYRIWITLYN 60
Query: 87 SKARRYRLSSNCYNYMLGLLACYCTAEPLLRLVMGISIFNLDGETSFAPFEMVSLIIEAL 146
+KA+ Y L Y+ +L +LAC C EP+LRLVMGIS+F++ ET PFE+ SL++EA
Sbjct: 61 AKAQIYVLRKMYYHCVLWILACCCVVEPVLRLVMGISLFDMGDETDLPPFEVASLMVEAF 120
Query: 147 AWCSMLIMICLETKFYIREFRWYVRFGVIYVLVGDAVILNLIIPMRDYYSRITLYLYISM 206
AW +ML++I LETK Y++EFRWYVRFGV+YVLV DAV+L+L++P+++ +R LYL IS
Sbjct: 121 AWFAMLVLIGLETKQYVKEFRWYVRFGVVYVLVADAVLLDLVLPLKNSINRTALYLCISS 180
Query: 207 VFCQALFGILILVYIPNLDPYPGYTIMQPEFVDNAEYEALPGGEHVCPERNASILSRTSF 266
CQALFGIL+LVYIP LD YP Y I+ E +DN EY+ALPGG ++CPER ASI S F
Sbjct: 181 RCCQALFGILLLVYIPELDLYPDYHILNNESLDNVEYDALPGGVNICPERYASIFSGIYF 240
Query: 267 GWMTPLLQLGYKKPITEKDVWKLDTWDQTEILIEKFHRCWIEESQRSKPWLLRALNNSFG 326
WMTPL+QLGY+KPITE+DVW+LD WDQTE LI++F RCW EES+R KPWLLRALNNS G
Sbjct: 241 SWMTPLMQLGYRKPITERDVWQLDQWDQTETLIKRFQRCWTEESRRPKPWLLRALNNSLG 300
Query: 327 GRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPAWIGYIYAFLIFVGVSFGVLTEAQ 386
RFWLGG+FK+G+DLSQFVGPV+L+H+LQSM GDPAW+GY+YAFLIF GV+FGVL ++Q
Sbjct: 301 RRFWLGGIFKVGHDLSQFVGPVILSHILQSMIEGDPAWVGYVYAFLIFFGVTFGVLCQSQ 360
Query: 387 YFQNVWRVGFRLRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQLHG 446
YFQ+V RVGFRLRSTLVAAIF K+LRLT++ARK F SGKVTNMITTDANALQ I++QLHG
Sbjct: 361 YFQHVGRVGFRLRSTLVAAIFHKSLRLTNKARKNFASGKVTNMITTDANALQLIAEQLHG 420
Query: 447 LWSAPFRITLSMVLLYQQLGVASLLGSLMLVLMVPLQTFIISKMRKLTKEGLQWTDRRVS 506
LWSAPFRI +SMVLLYQQLGVAS+ GSL+L L++P QT I+ KMRKLTKEGLQWTD+RV
Sbjct: 421 LWSAPFRIIVSMVLLYQQLGVASIFGSLILFLLIPFQTLIVRKMRKLTKEGLQWTDKRVG 480
Query: 507 LTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSIPVVVTVV 566
+ EILA+MD VKCYAWEKSF+SR+Q IR++ELSWFRKAQ LSAFNSFILNS PVVVT+V
Sbjct: 481 IIYEILASMDIVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSTPVVVTLV 540
Query: 567 SFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEER 626
SFG + LLGGDLTPARAFTSLSLFAVLR PL+ LPNL+SQ VNANVSLQR+EELLL+EER
Sbjct: 541 SFGVYVLLGGDLTPARAFTSLSLFAVLRSPLSTLPNLISQAVNANVSLQRIEELLLSEER 600
Query: 627 ILMPNPPLEPELPAVSIKNGNFSWDSKS--PTLSNINLDIPVGSLVAIVGGTGEGKTSLV 684
IL NPPL+P PA+SIKNG FSWDSK+ PTLS+INL+IPVGSLVAIVGGTGEGKTSL+
Sbjct: 601 ILAQNPPLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLI 660
Query: 685 SAMLGELPPLKDASVVIRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQ 744
SAMLGEL + +SV IRG+VAYVPQ+SWIFNATLR+NILFGS+F+ +YW+ +DV+ALQ
Sbjct: 661 SAMLGELSHAETSSVDIRGSVAYVPQVSWIFNATLRENILFGSDFESERYWRAIDVTALQ 720
Query: 745 HDLDLLPDRDLTEIGERGVNISGGQKQRVSMARA------------------------VF 780
HDLDL P RD TEIGERGVNISGGQKQRVSMARA VF
Sbjct: 721 HDLDLFPGRDRTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPFSALDAHVAHQVF 780
Query: 781 NSCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLMENA 840
+SC+K EL+GKTR+LVTNQLHFLP +DRIILVSEGMIKEEG+F ELSK G LF+KLMENA
Sbjct: 781 DSCVKHELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGNFAELSKSGTLFKKLMENA 840
Query: 841 GKMEEMEEREEKDDSINSNQE-VSKPVANRAVQVNEFPKNESYTKKGKRGRSVLVKQEER 899
GKM+ +E +N+N E +SK + V+E ++ ++GK GRS+LVKQEER
Sbjct: 841 GKMDATQE-------VNTNDENISKLGPTVTIDVSE--RSLGSIQQGKWGRSMLVKQEER 891
Query: 900 ETGIVSGSVLTRYKNALGGPWVIMILFACYLSTEVLRISSSTWLSFWTDQSTSKNYNPGF 959
ETGI+S V+ RY A+GG WV+MIL CYL+TEVLR+ SSTWLS WTDQST K+Y+PGF
Sbjct: 892 ETGIISWDVVMRYNKAVGGLWVVMILLVCYLTTEVLRVLSSTWLSIWTDQSTPKSYSPGF 951
Query: 960 YIAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILRAPMLFFHTNPIGRVIN 1019
YI +Y +L FGQV VT NS+WLI SSL AAKRLHD+MLNSILRAPMLFF TNP GRVIN
Sbjct: 952 YIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFETNPTGRVIN 1011
Query: 1020 RFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLILFYAAYLYYQ 1079
RFS+D+GDIDRNVA+ +NMFMNQLWQLLSTF LIGIVSTISLWAIMPLLILFYA Y+YYQ
Sbjct: 1012 RFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGIVSTISLWAIMPLLILFYATYIYYQ 1071
Query: 1080 STAREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTS 1139
ST+REV+RLDS+TRSP+YA FGEALNGLS+IRA+KAYDRMAKINGKSMDNNIRFTLA+TS
Sbjct: 1072 STSREVRRLDSVTRSPIYALFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLASTS 1131
Query: 1140 SNRWLTIRLETLGGIMIWLIATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLR 1199
SNRWLTIR E+LGG+MIWL ATFAV++ G AENQ FASTMGLLLSYTLNIT LLSGVLR
Sbjct: 1132 SNRWLTIRSESLGGVMIWLTATFAVLRYGNAENQAVFASTMGLLLSYTLNITTLLSGVLR 1191
Query: 1200 QASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSGSIKFEDVVLRYRPELPPV 1259
QAS+AENSLN+VERVG YIDLPSEA ++E+NRP WPS GSI+FEDV LRYRP LPPV
Sbjct: 1192 QASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIQFEDVHLRYRPGLPPV 1251
Query: 1260 LHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERG 1299
LHGLSF V PSEKVG+VGRTGAGKSSMLNAL+RIVELE+G
Sbjct: 1252 LHGLSFFVYPSEKVGVVGRTGAGKSSMLNALYRIVELEKG 1291
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9C8G9|AB1C_ARATH ABC transporter C family member 1 OS=Arabidopsis thaliana GN=ABCC1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1808 bits (4684), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 875/1299 (67%), Positives = 1046/1299 (80%), Gaps = 32/1299 (2%)
Query: 27 MASGPLDWYCRPVANGTWAKTVDSTFGAYTTCAVDSLVISISHSVLLGLCIFRIWLMNKN 86
M PLDWYC+PV NG W KTVD FGAYT CA+DS V+ ISH VLL LC++R+WL+ K+
Sbjct: 1 MGFEPLDWYCKPVPNGVWTKTVDYAFGAYTPCAIDSFVLGISHLVLLILCLYRLWLITKD 60
Query: 87 SKARRYRLSSNCYNYMLGLLACYCTAEPLLRLVMGISIFNLDGETSFAPFEMVSLIIEAL 146
K ++ L S ++Y L LLA Y TAEPL RLVM IS+ +LDG F P+E L++EA
Sbjct: 61 HKVDKFCLRSKWFSYFLALLAAYATAEPLFRLVMRISVLDLDG-AGFPPYEAFMLVLEAF 119
Query: 147 AWCSMLIMICLETKFYIREFRWYVRFGVIYVLVGDAVILNLIIPMRDYYSRITLYLYISM 206
AW S L+M +ETK YI E RWYVRF VIY LVGD V+LNL++ +++YY LYLYIS
Sbjct: 120 AWGSALVMTVVETKTYIHELRWYVRFAVIYALVGDMVLLNLVLSVKEYYGSFKLYLYISE 179
Query: 207 VFCQALFGILILVYIPNLDPYPGYTIMQPEFVDNAEYEALPGGEHVCPERNASILSRTSF 266
V Q FG L+ VY PNLDPYPGYT + E ++ EYE LPGGE++CPER+A++ F
Sbjct: 180 VAVQVAFGTLLFVYFPNLDPYPGYTPVGTENSEDYEYEELPGGENICPERHANLFDSIFF 239
Query: 267 GWMTPLLQLGYKKPITEKDVWKLDTWDQTEILIEKFHRCWIEESQRSKPWLLRALNNSFG 326
W+ PL+ LG K+P+TEKDVW LDTWD+TE L+ F + W +E ++ KPWLLRALNNS G
Sbjct: 240 SWLNPLMTLGSKRPLTEKDVWHLDTWDKTETLMRSFQKSWDKELEKPKPWLLRALNNSLG 299
Query: 327 GRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPAWIGYIYAFLIFVGVSFGVLTEAQ 386
GRFW GG +KIGND SQFVGP+LLN LL+SMQ +PAWIGYIYA IFVGV GVL EAQ
Sbjct: 300 GRFWWGGFWKIGNDCSQFVGPLLLNELLKSMQLNEPAWIGYIYAISIFVGVVLGVLCEAQ 359
Query: 387 YFQNVWRVGFRLRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQLHG 446
YFQNV RVG+RLRS L+AA+FRK+LRLT+E RK F +GK+TN++TTDA +LQQI Q LH
Sbjct: 360 YFQNVMRVGYRLRSALIAAVFRKSLRLTNEGRKKFQTGKITNLMTTDAESLQQICQSLHT 419
Query: 447 LWSAPFRITLSMVLLYQQLGVASLLGSLMLVLMVPLQTFIISKMRKLTKEGLQWTDRRVS 506
+WSAPFRI +++VLLYQQLGVAS++G+L LVLM P+QT IISK +KLTKEGLQ TD+R+
Sbjct: 420 MWSAPFRIIVALVLLYQQLGVASIIGALFLVLMFPIQTVIISKTQKLTKEGLQRTDKRIG 479
Query: 507 LTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSIPVVVTVV 566
L NE+LAAMDTVKCYAWE SFQS+VQ++RDDELSWFRKAQ LSAFN FILNSIPV+VTVV
Sbjct: 480 LMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNMFILNSIPVLVTVV 539
Query: 567 SFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEER 626
SFG F+LLGGDLTPARAFTSLSLF+VLRFPL MLPN+++Q+VNANVSL RLEE+L EER
Sbjct: 540 SFGVFSLLGGDLTPARAFTSLSLFSVLRFPLFMLPNIITQMVNANVSLNRLEEVLSTEER 599
Query: 627 ILMPNPPLEPELPAVSIKNGNFSWDSKS--PTLSNINLDIPVGSLVAIVGGTGEGKTSLV 684
+L+PNPP+EP PA+SI+NG FSWDSK+ PTLSNINLDIP+GSLVA+VG TGEGKTSL+
Sbjct: 600 VLLPNPPIEPGQPAISIRNGYFSWDSKADRPTLSNINLDIPLGSLVAVVGSTGEGKTSLI 659
Query: 685 SAMLGELPPLKDASVVIRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQ 744
SAMLGELP DA+V +RG+VAYVPQ+SWIFNAT+R NILFG+ FD KY + +DV+ALQ
Sbjct: 660 SAMLGELPARSDATVTLRGSVAYVPQVSWIFNATVRDNILFGAPFDQEKYERVIDVTALQ 719
Query: 745 HDLDLLPDRDLTEIGERGVNISGGQKQRVSMARA------------------------VF 780
HDL+LLP DLTEIGERGVNISGGQKQRVSMARA VF
Sbjct: 720 HDLELLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVCILDDPLSALDAHVGQQVF 779
Query: 781 NSCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLMENA 840
CIK EL TR+LVTNQLHFL VD+I+LV EG +KEEG++EEL G LFQ+LMENA
Sbjct: 780 EKCIKRELGQTTRVLVTNQLHFLSQVDKILLVHEGTVKEEGTYEELCHSGPLFQRLMENA 839
Query: 841 GKMEEMEEREEKDDSINSNQEVSKPVANRAVQVNEFPKNESYTKKGKRGRSVLVKQEERE 900
GK+E+ E++ +Q KPV N N K+ TK K G SVLVK+EERE
Sbjct: 840 GKVEDY---SEENGEAEVDQTSVKPVENG--NANNLQKDGIETKNSKEGNSVLVKREERE 894
Query: 901 TGIVSGSVLTRYKNALGGPWVIMILFACYLSTEVLRISSSTWLSFWTDQSTSKNYNPGFY 960
TG+VS VL RY+NALGG WV+M+L CY+ T+V R+SSSTWLS WTD T K + P FY
Sbjct: 895 TGVVSWKVLERYQNALGGAWVVMMLVICYVLTQVFRVSSSTWLSEWTDSGTPKTHGPLFY 954
Query: 961 IAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILRAPMLFFHTNPIGRVINR 1020
+Y +L+FGQV+VTL+NSYWLI+SSL AAK++HD+ML SILRAPM+FF TNP+GR+INR
Sbjct: 955 NIVYALLSFGQVSVTLINSYWLIMSSLYAAKKMHDAMLGSILRAPMVFFQTNPLGRIINR 1014
Query: 1021 FSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLILFYAAYLYYQS 1080
F++D+GDIDR VA FVNMFM + QLLST +LIGIVST+SLWAIMPLL++FY AYLYYQ+
Sbjct: 1015 FAKDMGDIDRTVAVFVNMFMGSIAQLLSTVILIGIVSTLSLWAIMPLLVVFYGAYLYYQN 1074
Query: 1081 TAREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSS 1140
T+RE+KR+DS TRSPVYAQFGEALNGLS+IRA+KAYDRMA+ING+SMDNNIRFTL N ++
Sbjct: 1075 TSREIKRMDSTTRSPVYAQFGEALNGLSSIRAYKAYDRMAEINGRSMDNNIRFTLVNMAA 1134
Query: 1141 NRWLTIRLETLGGIMIWLIATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQ 1200
NRWL IRLE LGG+M+WL A+ AVMQNG+A NQ A+ASTMGLLLSY L+IT+ L+ VLR
Sbjct: 1135 NRWLGIRLEVLGGLMVWLTASLAVMQNGKAANQQAYASTMGLLLSYALSITSSLTAVLRL 1194
Query: 1201 ASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSGSIKFEDVVLRYRPELPPVL 1260
AS AENSLN+VERVG YI++PSEAP ++E+NRPPP WPSSGSIKFEDVVLRYRPELPPVL
Sbjct: 1195 ASLAENSLNSVERVGNYIEIPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVL 1254
Query: 1261 HGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERG 1299
HG+SF +SP +KVGIVGRTGAGKSS+LNALFRIVELE+G
Sbjct: 1255 HGVSFLISPMDKVGIVGRTGAGKSSLLNALFRIVELEKG 1293
|
Pump for glutathione S-conjugates. Mediates the transport of S-(2,4-dinitrophenyl)-glutathione (DNP-GS), GSSG, cyanidin 3-glucoside-GS (C3G-GS) and metolachlor-GS (MOC-GS). Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q42093|AB2C_ARATH ABC transporter C family member 2 OS=Arabidopsis thaliana GN=ABCC2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1803 bits (4670), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 884/1297 (68%), Positives = 1051/1297 (81%), Gaps = 33/1297 (2%)
Query: 32 LDWYCRPVANGTWAKTVDSTFGAYTTCAVDSLVISISHSVLLGLCIFRIWLMNKNSKARR 91
++WYC+PV NG W K V + FGAYT CA DS V+ IS VLL LC++RIWL K+ K R
Sbjct: 6 IEWYCKPVPNGVWTKQVANAFGAYTPCATDSFVLGISQLVLLVLCLYRIWLALKDHKVER 65
Query: 92 YRLSSNCYNYMLGLLACYCTAEPLLRLVMGISIFNLDGETSFAPFEMVSLIIEALAWCSM 151
+ L S YNY L LLA Y TAEPL RL+MGIS+ + DG PFE L ++A AW ++
Sbjct: 66 FCLRSRLYNYFLALLAAYATAEPLFRLIMGISVLDFDG-PGLPPFEAFGLGVKAFAWGAV 124
Query: 152 LIMICLETKFYIREFRWYVRFGVIYVLVGDAVILNLIIPMRDYYSRITLYLYISMVFCQA 211
++MI +ETK YIRE RWYVRF VIY LVGD V+LNL++ +++YYS LYLY S V Q
Sbjct: 125 MVMILMETKIYIRELRWYVRFAVIYALVGDMVLLNLVLSVKEYYSSYVLYLYTSEVGAQV 184
Query: 212 LFGILILVYIPNLDPYPGYTIMQPEFVDNAEYEALPGGEHVCPERNASILSRTSFGWMTP 271
LFGIL+ +++PNLD YPGY ++ E VD+ EYE + G+ +CPE++A+I + F WM P
Sbjct: 185 LFGILLFMHLPNLDTYPGYMPVRSETVDDYEYEEISDGQQICPEKHANIFDKIFFSWMNP 244
Query: 272 LLQLGYKKPITEKDVWKLDTWDQTEILIEKFHRCWIEESQRSKPWLLRALNNSFGGRFWL 331
L+ LG K+P+TEKDVW LDTWDQTE L F W +E Q+ +PWLLRALNNS GGRFW
Sbjct: 245 LMTLGSKRPLTEKDVWYLDTWDQTETLFTSFQHSWDKELQKPQPWLLRALNNSLGGRFWW 304
Query: 332 GGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPAWIGYIYAFLIFVGVSFGVLTEAQYFQNV 391
GG +KIGND SQFVGP+LLN LL+SMQ PAW+GYIYAF IFVGV FGVL EAQYFQNV
Sbjct: 305 GGFWKIGNDCSQFVGPLLLNQLLKSMQEDAPAWMGYIYAFSIFVGVVFGVLCEAQYFQNV 364
Query: 392 WRVGFRLRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQLHGLWSAP 451
RVG+RLRS L+AA+FRK+LRLT+E R+ F +GK+TN++TTDA +LQQI Q LH +WSAP
Sbjct: 365 MRVGYRLRSALIAAVFRKSLRLTNEGRRKFQTGKITNLMTTDAESLQQICQSLHTMWSAP 424
Query: 452 FRITLSMVLLYQQLGVASLLGSLMLVLMVPLQTFIISKMRKLTKEGLQWTDRRVSLTNEI 511
FRI ++++LLYQQLGVASL+G+L+LVLM PLQT IISKM+KLTKEGLQ TD+R+ L NE+
Sbjct: 425 FRIIIALILLYQQLGVASLIGALLLVLMFPLQTVIISKMQKLTKEGLQRTDKRIGLMNEV 484
Query: 512 LAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSIPVVVTVVSFGTF 571
LAAMDTVKCYAWE SFQS+VQ++RDDELSWFRK+Q L A N FILNSIPV+VT+VSFG F
Sbjct: 485 LAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKSQLLGALNMFILNSIPVLVTIVSFGVF 544
Query: 572 TLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILMPN 631
TLLGGDLTPARAFTSLSLFAVLRFPL MLPN+++QVVNANVSL+RLEE+L EERIL+PN
Sbjct: 545 TLLGGDLTPARAFTSLSLFAVLRFPLFMLPNIITQVVNANVSLKRLEEVLATEERILLPN 604
Query: 632 PPLEPELPAVSIKNGNFSWDSKS--PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLG 689
PP+EP PA+SI+NG FSWDSK PTLSNINLD+P+GSLVA+VG TGEGKTSL+SA+LG
Sbjct: 605 PPIEPGEPAISIRNGYFSWDSKGDRPTLSNINLDVPLGSLVAVVGSTGEGKTSLISAILG 664
Query: 690 ELPPLKDASVVIRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDL 749
ELP DA V +RG+VAYVPQ+SWIFNAT+R NILFGS FD KY + +DV++L+HDL+L
Sbjct: 665 ELPATSDAIVTLRGSVAYVPQVSWIFNATVRDNILFGSPFDREKYERAIDVTSLKHDLEL 724
Query: 750 LPDRDLTEIGERGVNISGGQKQRVSMARAV------------------------FNSCIK 785
LP DLTEIGERGVNISGGQKQRVSMARAV F CIK
Sbjct: 725 LPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGQQVFEKCIK 784
Query: 786 EELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLMENAGKMEE 845
EL KTR+LVTNQLHFL VDRI+LV EG +KEEG++EELS +G LFQ+LMENAGK+EE
Sbjct: 785 RELGQKTRVLVTNQLHFLSQVDRIVLVHEGTVKEEGTYEELSSNGPLFQRLMENAGKVEE 844
Query: 846 MEEREEKDDSINSNQEVSKPVAN---RAVQVNEFPKNESYTKKGKRGRSVLVKQEERETG 902
E ++ ++Q +PVAN +Q++ +S K G+SVL+KQEERETG
Sbjct: 845 YSE---ENGEAEADQTAEQPVANGNTNGLQMDGSDDKKSKEGNKKGGKSVLIKQEERETG 901
Query: 903 IVSGSVLTRYKNALGGPWVIMILFACYLSTEVLRISSSTWLSFWTDQSTSKNYNPGFYIA 962
+VS VL RY++ALGG WV+M+L CY+ TEV R++SSTWLS WTD T K++ P FY
Sbjct: 902 VVSWRVLKRYQDALGGAWVVMMLLLCYVLTEVFRVTSSTWLSEWTDAGTPKSHGPLFYNL 961
Query: 963 IYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILRAPMLFFHTNPIGRVINRFS 1022
IY +L+FGQV VTL NSYWLI+SSL AAK+LHD+ML+SILRAPM FFHTNP+GR+INRF+
Sbjct: 962 IYALLSFGQVLVTLTNSYWLIMSSLYAAKKLHDNMLHSILRAPMSFFHTNPLGRIINRFA 1021
Query: 1023 RDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLILFYAAYLYYQSTA 1082
+DLGDIDR VA FVNMFM Q+ QLLST VLIGIVST+SLWAIMPLL+LFY AYLYYQ+TA
Sbjct: 1022 KDLGDIDRTVAVFVNMFMGQVSQLLSTVVLIGIVSTLSLWAIMPLLVLFYGAYLYYQNTA 1081
Query: 1083 REVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNR 1142
REVKR+DSI+RSPVYAQFGEALNGLSTIRA+KAYDRMA ING+SMDNNIRFTL N +NR
Sbjct: 1082 REVKRMDSISRSPVYAQFGEALNGLSTIRAYKAYDRMADINGRSMDNNIRFTLVNMGANR 1141
Query: 1143 WLTIRLETLGGIMIWLIATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQAS 1202
WL IRLETLGG+MIWL A+FAVMQNGRAENQ AFASTMGLLLSY LNIT+LL+GVLR AS
Sbjct: 1142 WLGIRLETLGGLMIWLTASFAVMQNGRAENQQAFASTMGLLLSYALNITSLLTGVLRLAS 1201
Query: 1203 RAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSGSIKFEDVVLRYRPELPPVLHG 1262
AENSLNAVERVG YI++P EAP ++E+NRPPP WPSSGSIKFEDVVLRYRP+LPPVLHG
Sbjct: 1202 LAENSLNAVERVGNYIEIPPEAPPVIENNRPPPGWPSSGSIKFEDVVLRYRPQLPPVLHG 1261
Query: 1263 LSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERG 1299
+SF + P++KVGIVGRTGAGKSS+LNALFRIVE+E+G
Sbjct: 1262 VSFFIHPTDKVGIVGRTGAGKSSLLNALFRIVEVEKG 1298
|
Pump for glutathione S-conjugates. Mediates the transport of S-conjugates such as GSH, S-(2,4-dinitrophenyl)-glutathione (DNP-GS), GSSG, cyanidin 3-glucoside-GS (C3G-GS) and metolachlor-GS (MOC-GS), glucuronides such as 17-beta-estradiol 17-(beta-D-glucuronide) (E(2)17betaG), and of the chlorophyll catabolite such as B.napus nonfluorescent chlorophyll catabolite (Bn-NCC-1). Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q28689|MRP2_RABIT Canalicular multispecific organic anion transporter 1 OS=Oryctolagus cuniculus GN=ABCC2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 663 bits (1711), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/1182 (34%), Positives = 634/1182 (53%), Gaps = 155/1182 (13%)
Query: 254 PERNASILSRTSFGWMTPLLQLGYKKPITEKDVWKLDTWDQTEILIEKFHRCWIEESQRS 313
P AS LS+ SF W ++ GYK+P+T +DVW +D + + ++ +F +E +++
Sbjct: 194 PSVTASFLSKISFSWYDSVVLKGYKRPLTLEDVWDIDEEFKAKTIVSRFEVHMAKELKKA 253
Query: 314 ---------------------------------------------------KPWLLRALN 322
K WL++ +
Sbjct: 254 RKAFQKRQQKKSQKNSRLQGLNKNQSQSQDVLVLEETKKKNKKSGTTKDFPKSWLVKTIF 313
Query: 323 NSFGGRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDP---AWIGYIYAFLIFVGVSF 379
+F L K+ DL F+ P LL L+ + DP AW+GYI+A L+F
Sbjct: 314 KTFYMVLLKSFLLKLVYDLLTFLNPQLLKLLITFV--SDPNSYAWLGYIFAILLFAVALI 371
Query: 380 GVLTEAQYFQNVWRVGFRLRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQ 439
+ YF + +G + +T++A +++K L +++ A++ + G+ N+++ DA L
Sbjct: 372 QSICLQTYFHMCFNLGMCVGTTVMATVYKKALTISNLAKRQYTIGETVNLMSVDAQKLMD 431
Query: 440 ISQQLHGLWSAPFRITLSMVLLYQQLGVASLLGSLMLVLMVPLQTFIISKMRKLTKEGLQ 499
++ +H +WS+ +I LS+ L+ +LG + L G ++VL++P+ + +K R + + ++
Sbjct: 432 VTNFIHLVWSSVLQIVLSIYFLWVELGPSVLAGVGVMVLLIPVNGILATKNRNIQFKNMK 491
Query: 500 WTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSI 559
+ D+R+ + NEIL+ M +K +AWE SF+ +V ++R EL R ++ + F+L
Sbjct: 492 YKDKRLRIMNEILSGMKILKYFAWEPSFKDQVHNLRKKELKNLRTFAYMQSVVMFLLYLT 551
Query: 560 PVVVTVVSFGTFTLLGGD--LTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRL 617
PV+V+V +F + L+ + L +AFTS++LF +LRFP++MLPN++S ++ A+VS+ RL
Sbjct: 552 PVLVSVTTFSVYVLVDSNNILDAEKAFTSITLFNILRFPMSMLPNVISAMLQASVSVDRL 611
Query: 618 EELLLAEE---RILMPNPPLEPELPAVSIKNGNFSWDSK-SPTLSNINLDIPVGSLVAIV 673
E+ L ++ + +P + AV +F+WD PT+ N+NLDI G LVA+V
Sbjct: 612 EKYLSGDDLDTSAIQRDPNFD---KAVQFSEASFTWDRNLEPTIRNVNLDIMPGQLVAVV 668
Query: 674 GGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISWIFNATLRKNILFGSEFDPAK 733
G G GK+SL+SAMLGE+ + + I+GT AYVPQ SWI N T++ NILFG+EFD +
Sbjct: 669 GTVGSGKSSLMSAMLGEMENVH-GHITIKGTTAYVPQQSWIQNGTIKDNILFGAEFDERR 727
Query: 734 YWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARA--------------- 778
Y + ++ AL DL++LP DL EIGE+G+N+SGGQKQR+S+ARA
Sbjct: 728 YQRVLEACALLPDLEILPGGDLAEIGEKGINLSGGQKQRISLARASYQNSDIYILDDPLS 787
Query: 779 ---------VFNSCIKEE--LRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEEL- 826
+FN + L GKTR+LVT+ LHFLP VD I++V G I E+GS+ L
Sbjct: 788 AVDAHVGKHIFNKVLGPNGLLNGKTRLLVTHSLHFLPQVDEIVVVENGTILEKGSYSSLL 847
Query: 827 ------SKHGRLFQKLMENAGK-----------------MEEMEEREEKDDSINSNQEVS 863
+K+ ++F K ++ G+ + +EE E S+ +E S
Sbjct: 848 AKKGVFAKNLKMFVKHTDSEGEVTVNDGSEEDDDDDSGLISSIEEFPEDSISLTLKRENS 907
Query: 864 ----------------KPVANR-AVQVNEFPKNESYTKKGKRGRSVLVKQEERETGIVSG 906
K + N Q + PK E K K L+K+E ETG V
Sbjct: 908 LHRTLSRSSRSSGRRLKSLKNSLKAQNGKTPKEEEVVKGQK-----LIKKEFMETGKVKF 962
Query: 907 SVLTRYKNALGGPWVIMILFACYLSTEVLRISSSTWLSFWTDQSTSKNYNPGFY------ 960
S+ +Y A+G ++ I+FA Y+ V I S+ WLS WT S S YN Y
Sbjct: 963 SIYLKYLQAIGWCSIVGIIFA-YVLNSVAFIGSNLWLSAWT--SDSNTYNGTNYPASQRD 1019
Query: 961 --IAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILRAPMLFFHTNPIGRVI 1018
I I+ +L Q L+ S+W A+ LH +LN+ILRAPM FF+T PIGR++
Sbjct: 1020 LRIGIFGVLGLAQGLTVLVASFWSASGCAHASNILHKQLLNNILRAPMSFFNTTPIGRIV 1079
Query: 1019 NRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLILFYAAYLYY 1078
NRF+ D+ +D + + +M ++ST ++I + + + I+PL I++ A ++Y
Sbjct: 1080 NRFAGDISTVDDTLPQSLRSWMMCFLAIISTLIMICMATPVFAVIIIPLAIIYVAVQVFY 1139
Query: 1079 QSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANT 1138
+T+R+++RLDS+TRSP+Y+ F E ++GL IRAF+ R K N +D N + +
Sbjct: 1140 VATSRQLRRLDSVTRSPIYSHFTETVSGLPVIRAFEHQQRFLKQNEIGIDTNQKCVSSWI 1199
Query: 1139 SSNRWLTIRLETLGGIMIWLIATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVL 1198
+SNRWL RLE +G ++++ A V+ V +G +LS LNIT L+ ++
Sbjct: 1200 TSNRWLAFRLELVGNLVVFSSALMMVIYRDTLSGDV-----VGFVLSNALNITQTLNWLV 1254
Query: 1199 RQASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSGSIKFEDVVLRYRPELPP 1258
R S E ++ AVER+ YI + +EAP V RPP WP G I+F + +RYRPEL
Sbjct: 1255 RMTSETETNIVAVERITEYIKVENEAP-WVTDKRPPAGWPHKGEIQFSNYQVRYRPELDL 1313
Query: 1259 VLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
VL G++ + EK+G+VGRTGAGKSS+ N LFRI+E G
Sbjct: 1314 VLKGINCDIKSMEKIGVVGRTGAGKSSLTNCLFRILEAAGGH 1355
|
Mediates hepatobiliary excretion of numerous organic anions. Oryctolagus cuniculus (taxid: 9986) |
| >sp|O35379|MRP1_MOUSE Multidrug resistance-associated protein 1 OS=Mus musculus GN=Abcc1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 662 bits (1708), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/1284 (32%), Positives = 662/1284 (51%), Gaps = 152/1284 (11%)
Query: 134 APFEMVSLIIEALAWCSMLIMICLETKFYIREFRWYVRFGVIYVLVGDAVILNLIIPMR- 192
AP +VS + + +I LE + ++ + F ++ +L A++ + II
Sbjct: 103 APVLLVSPTLLGITMLLATFLIQLERRKGVQSSGIMLTFWLVALLCALAILRSKIISALK 162
Query: 193 -----DYYSRITLYLYISMVFCQALFGILILVYIPNLDPYPGYTIMQPEFVDNAEYEALP 247
D + T YLY ++V Q L+L + P T+
Sbjct: 163 KDAHVDVFRDSTFYLYFTLVLVQ-----LVLSCFSDCSPLFSETVHD------------- 204
Query: 248 GGEHVCPERNASILSRTSFGWMTPLLQLGYKKPITEKDVWKLDTWDQTEILIEKFHRCWI 307
+ CPE +AS LSR +F W+T ++ GY++P+ D+W L+ D +E ++ W
Sbjct: 205 --RNPCPESSASFLSRITFWWITGMMVHGYRQPLESSDLWSLNKEDTSEEVVPVLVNNWK 262
Query: 308 EESQRSK------------------------------------------PWLLRALNNSF 325
+E +S+ P L + L +F
Sbjct: 263 KECDKSRKQPVRIVYAPPKDPSKPKGSSQLDVNEEVEALIVKSPHKDREPSLFKVLYKTF 322
Query: 326 GGRFWLGGLFKIGNDLSQFVGPVLLNHLLQSM-QRGDPAWIGYIYAFLIFVGVSFGVLTE 384
G F + L+K +DL F GP +L ++ + R P W GY Y L+FV L
Sbjct: 323 GPYFLMSFLYKALHDLMMFAGPKILELIINFVNDREAPDWQGYFYTALLFVSACLQTLAL 382
Query: 385 AQYFQNVWRVGFRLRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQL 444
QYF + G R+++ +V A++RK L +T+ ARK G++ N+++ DA ++ +
Sbjct: 383 HQYFHICFVSGMRIKTAVVGAVYRKALLITNAARKSSTVGEIVNLMSVDAQRFMDLATYI 442
Query: 445 HGLWSAPFRITLSMVLLYQQLGVASLLGSLMLVLMVPLQTFIISKMRKLTKEGLQWTDRR 504
+ +WSAP ++ L++ L+ LG + L G +++LMVPL + K + ++ D R
Sbjct: 443 NMIWSAPLQVILALYFLWLSLGPSVLAGVAVMILMVPLNAVMAMKTKTYQVAHMKSKDNR 502
Query: 505 VSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSIPVVVT 564
+ L NEIL + +K YAWE +FQ +V SIR +EL +K+ +L+A +F P +V
Sbjct: 503 IKLMNEILNGIKVLKLYAWELAFQDKVMSIRQEELKVLKKSAYLAAVGTFTWVCTPFLVA 562
Query: 565 VVSFGTFTLLG--GDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLL 622
+ +F F + L +AF SL+LF +LRFPLN+LP ++S +V A+VSL+RL
Sbjct: 563 LSTFAVFVTVDERNILDAKKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRL----- 617
Query: 623 AEERILMPNPPLEP-----------ELPAVSIKNGNFSWD-SKSPTLSNINLDIPVGSLV 670
RI + + LEP E ++++KN F+W + PTL+ I IP G+LV
Sbjct: 618 ---RIFLSHEELEPDSIERRSIKSGEGNSITVKNATFTWARGEPPTLNGITFSIPEGALV 674
Query: 671 AIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISWIFNATLRKNILFGSEFD 730
A+VG G GK+SL+SA+L E+ + + V ++G+VAYVPQ +WI N +LR+NILFG
Sbjct: 675 AVVGQVGCGKSSLLSALLAEMDKV-EGHVTLKGSVAYVPQQAWIQNDSLRENILFGHPLQ 733
Query: 731 PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFNSC------- 783
Y ++ AL DL++LP D TEIGE+GVN+SGGQKQRVS+ARAV+++
Sbjct: 734 ENYYKAVMEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNSDIYLFDD 793
Query: 784 ------------IKEE-------LRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFE 824
I E+ L+ KTRILVT+ + +LP VD II++S G I E GS++
Sbjct: 794 PLSAVDAHVGKHIFEKVVGPMGLLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQ 853
Query: 825 ELSKHGRLFQKLMENAGKMEEMEEREEKDDSINSNQEVSKPVANRAVQVNEFPKN----- 879
EL F + + E ++ +DDS++ + + SKPV N + + K+
Sbjct: 854 ELLDRDGAFAEFLRTYANAE--QDLASEDDSVSGSGKESKPVENGMLVTDTVGKHLQRHL 911
Query: 880 -----------------ESYTKKGKRGRS-VLVKQEERETGIVSGSVLTRYKNALGGPWV 921
K G + + L++ ++ +TG V SV Y A+G
Sbjct: 912 SNSSSHSGDTSQQHSSIAELQKAGAKEETWKLMEADKAQTGQVQLSVYWNYMKAIGLFIT 971
Query: 922 IMILFACYLSTEVLRISSSTWLSFWTDQSTSKN---YNPGFYIAIYTILAFGQVTVTLLN 978
+ +F +L V ++S+ WLS WTD N N F +++Y L Q
Sbjct: 972 FLSIF-LFLCNHVSALASNYWLSLWTDDPPVVNGTQANRNFRLSVYGALGILQGAAIFGY 1030
Query: 979 SYWLIISSLRAAKRLHDSMLNSILRAPMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNM 1038
S + I + A++RLH +L ++LR+PM FF P G ++NRFS++L +D + + M
Sbjct: 1031 SMAVSIGGIFASRRLHLDLLYNVLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPQVIKM 1090
Query: 1039 FMNQLWQLLSTFVLIGIVSTISLWAIMPLLILFYAAYLYYQSTAREVKRLDSITRSPVYA 1098
FM L+ ++ ++I + + I+ I PL ++++ +Y +++R++KRL+S++RSPVY+
Sbjct: 1091 FMGSLFSVIGAVIIILLATPIAAVIIPPLGLVYFFVQRFYVASSRQLKRLESVSRSPVYS 1150
Query: 1099 QFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGIMIWL 1158
F E L G+S IRAF+ +R + +D N + + +NRWL +RLE +G ++
Sbjct: 1151 HFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLF 1210
Query: 1159 IATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYI 1218
A FAV+ A +GL +SY+L IT L+ ++R +S E ++ AVER+ Y
Sbjct: 1211 AALFAVISRHSLS-----AGLVGLSVSYSLQITAYLNWLVRMSSEMETNIVAVERLKEYS 1265
Query: 1219 DLPSEAPGMVESNRPPPAWPSSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGR 1278
+ EAP ++ PP WP SG ++F D LRYR +L VL ++ T+ EKVGIVGR
Sbjct: 1266 ETEKEAPWQIQETAPPSTWPHSGRVEFRDYCLRYREDLDLVLKHINVTIEGGEKVGIVGR 1325
Query: 1279 TGAGKSSMLNALFRIVELERGENI 1302
TGAGKSS+ LFRI E GE I
Sbjct: 1326 TGAGKSSLTLGLFRINESAEGEII 1349
|
Mediates export of organic anions and drugs from the cytoplasm. Mediates ATP-dependent transport of glutathione and glutathione conjugates, leukotriene C4, estradiol-17-beta-o-glucuronide, methotrexate, antiviral drugs and other xenobiotics. Confers resistance to anticancer drugs. Hydrolyzes ATP with low efficiency. Mus musculus (taxid: 10090) |
| >sp|Q8CG09|MRP1_RAT Multidrug resistance-associated protein 1 OS=Rattus norvegicus GN=Abcc1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 661 bits (1705), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/1221 (32%), Positives = 642/1221 (52%), Gaps = 146/1221 (11%)
Query: 193 DYYSRITLYLYISMVFCQALFGILILVYIPNLDPYPGYTIMQPEFVDNAEYEALPGGEHV 252
D + YLY ++VF Q L+L + P T+ P +
Sbjct: 168 DMFRDSAFYLYFTLVFIQ-----LVLSCFSDSSPLFSETVRDP---------------NP 207
Query: 253 CPERNASILSRTSFGWMTPLLQLGYKKPITEKDVWKLDTWDQTEILIEKFHRCWIEESQR 312
CPE +AS LSR +F W+T ++ GY++P+ D+W L+ D +E ++ W +E +
Sbjct: 208 CPESSASFLSRITFWWITGMMVQGYRQPLKSSDLWSLNKEDTSEEVVPVLVNNWKKECVK 267
Query: 313 SK------------------------------------------PWLLRALNNSFGGRFW 330
S+ P L + L +FG F
Sbjct: 268 SRKQPVRIVYAPPKDPTKPKGSSQLDVNEEVEALIVKSSHKDRDPSLFKVLYKTFGPYFL 327
Query: 331 LGGLFKIGNDLSQFVGPVLLNHLLQSM-QRGDPAWIGYIYAFLIFVGVSFGVLTEAQYFQ 389
+ L+K +DL F GP +L ++ + R P W GY+Y L+FV L QYF
Sbjct: 328 MSFLYKALHDLMMFAGPEILELIINFVNDREAPDWQGYLYTALLFVSACLQTLALHQYFH 387
Query: 390 NVWRVGFRLRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQLHGLWS 449
+ G R+++ +V A++RK L +T+ ARK G++ N+++ DA ++ ++ +WS
Sbjct: 388 ICFVTGMRIKTAVVGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLATYINMIWS 447
Query: 450 APFRITLSMVLLYQQLGVASLLGSLMLVLMVPLQTFIISKMRKLTKEGLQWTDRRVSLTN 509
AP ++TL++ L+ LG + L G +++LMVP + K + ++ D R+ L N
Sbjct: 448 APLQVTLALYFLWLNLGPSVLAGVAVMILMVPFNAVMAMKTKTYQVAHMKSKDNRIKLMN 507
Query: 510 EILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSIPVVVTVVSFG 569
EIL + +K YAWE +FQ +V +IR +EL +K+ +L+A +F P +V + +F
Sbjct: 508 EILNGIKVLKLYAWELAFQDKVMNIRQEELKVLKKSAYLAAVGTFTWVCTPFLVALSTFA 567
Query: 570 TFTLLGGD--LTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERI 627
F + L +AF SL+LF +LRFPLN+LP ++S +V A+VSL+RL RI
Sbjct: 568 VFVTVDEKNILDAKKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRL--------RI 619
Query: 628 LMPNPPLEPE------------LPAVSIKNGNFSWD-SKSPTLSNINLDIPVGSLVAIVG 674
+ + LEP+ + ++++KN F+W + PTL+ I IP G+LVA+VG
Sbjct: 620 FLSHEELEPDSIERWSIKDGGGMNSITVKNATFTWARDEPPTLNGITFAIPDGALVAVVG 679
Query: 675 GTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISWIFNATLRKNILFGSEFDPAKY 734
G GK+SL+SA+L E+ + + V ++G+VAYVPQ +WI N +LR+NILFG Y
Sbjct: 680 QVGCGKSSLLSALLAEMDKV-EGHVTLKGSVAYVPQQAWIQNDSLRENILFGRPLQEHCY 738
Query: 735 WKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFNSC----------- 783
++ AL DL++LP DLTEIGE+GVN+SGGQKQRVS+ARAV+ +
Sbjct: 739 KAVMEACALLPDLEILPSGDLTEIGEKGVNLSGGQKQRVSLARAVYCNSDIYLLDDPLSA 798
Query: 784 --------IKEE-------LRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEE-LS 827
I E+ L+ KTRILVT+ + +LP VD II++S G I E GS++E L
Sbjct: 799 VDAHVGKHIFEKVVGPMGLLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLD 858
Query: 828 KHGRLFQKLMENAGKMEEMEEREEKDDSINSNQEVSKPVANRAVQVNEFPK--------- 878
+ G + + A +++ ++ + ++ + SKPV N + + K
Sbjct: 859 RDGAFAEFVRTYANTEQDLASEDDSKNGVSGLGKESKPVENGILVTDAVGKPLQRHLSNS 918
Query: 879 -------NESYTKKGKRGRS-------VLVKQEERETGIVSGSVLTRYKNALGGPWVIMI 924
N+ ++ + +S L++ ++ +TG V SV Y A+G +
Sbjct: 919 SSHSVVTNQQHSSTAELQKSGVKEETWKLMEADKAQTGQVKLSVYWNYMKAIGLCISFLS 978
Query: 925 LFACYLSTEVLRISSSTWLSFWTDQSTSKN---YNPGFYIAIYTILAFGQVTVTLLNSYW 981
+F +L V ++S+ WLS WTD + N N F +++Y L Q S
Sbjct: 979 IF-LFLCNHVSALASNYWLSLWTDDRPAVNGTQENRNFRLSVYGALGILQGVAVFGYSMA 1037
Query: 982 LIISSLRAAKRLHDSMLNSILRAPMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMN 1041
+ I + A++RLH +L ++LR+PM FF P G ++NRFS++L +D + + MFM
Sbjct: 1038 VSIGGIFASRRLHLDLLQNVLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPQVIKMFMG 1097
Query: 1042 QLWQLLSTFVLIGIVSTISLWAIMPLLILFYAAYLYYQSTAREVKRLDSITRSPVYAQFG 1101
L+ ++ ++I + + I+ I PL ++++ +Y +++R++KRL+S++RSPVY+ F
Sbjct: 1098 SLFSVIGAVIIILLATPIAAVIIPPLGLVYFFVQRFYVASSRQLKRLESVSRSPVYSHFN 1157
Query: 1102 EALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGIMIWLIAT 1161
E L G+S IRAF+ +R + + +D N + + +NRWL +RLE +G ++ A
Sbjct: 1158 ETLLGVSVIRAFEEQERFIRQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFAAL 1217
Query: 1162 FAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLP 1221
FAV+ A +GL +SY+L IT L+ ++R +S E ++ AVER+ Y +
Sbjct: 1218 FAVISRHSLS-----AGLVGLSVSYSLQITAYLNWLVRMSSEMETNIVAVERLKEYSETE 1272
Query: 1222 SEAPGMVESNRPPPAWPSSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGA 1281
EA ++ PP WP SG ++F D LRYR +L VL ++ T+ EKVGIVGRTGA
Sbjct: 1273 KEASWQIQETAPPSTWPHSGRVEFRDYCLRYREDLDLVLKHINVTIEGGEKVGIVGRTGA 1332
Query: 1282 GKSSMLNALFRIVELERGENI 1302
GKSS+ LFRI E GE I
Sbjct: 1333 GKSSLTLGLFRINESAEGEII 1353
|
Mediates export of organic anions and drugs from the cytoplasm. Mediates ATP-dependent transport of glutathione and glutathione conjugates, leukotriene C4, estradiol-17-beta-o-glucuronide, methotrexate, antiviral drugs and other xenobiotics. Confers resistance to anticancer drugs. Hydrolyzes ATP with low efficiency. Rattus norvegicus (taxid: 10116) |
| >sp|B2RX12|MRP3_MOUSE Canalicular multispecific organic anion transporter 2 OS=Mus musculus GN=Abcc3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 660 bits (1702), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/1213 (32%), Positives = 647/1213 (53%), Gaps = 142/1213 (11%)
Query: 193 DYYSRITLYLYISMVFCQALFGILILVYIPNLDPYPGYTIMQPEFVDNAEYEALPGGEHV 252
D + T Y+Y ++VFC LIL P + PE +D +
Sbjct: 167 DPFRFTTFYIYFALVFCA-----LILSCFKEKPP-----LFSPENLDT----------NP 206
Query: 253 CPERNASILSRTSFGWMTPLLQLGYKKPITEKDVWKLDTWDQTEILIEKFHRCWIEESQR 312
CPE +A SR SF W T L LGY++P+ ++D+W L D + ++++ W ++ +
Sbjct: 207 CPEASAGFFSRLSFWWFTRLAILGYRRPLEDRDLWSLSEEDCSHKVVQRLLEAWQKQQNQ 266
Query: 313 S---------------------------KPWLLRALNNSFGGRFWLGGLFKIGNDLSQFV 345
+ +P LRAL +F + F + +L FV
Sbjct: 267 ASGSQTATAEPKIPGEDAVLLKPRPKSKQPSFLRALVRTFTSSLLMSACFNLIQNLLGFV 326
Query: 346 GPVLLNHLLQSMQRGD-PAWIGYIYAFLIFVGVSFGVLTEAQYFQNVWRVGFRLRSTLVA 404
P LL+ L++ + P W G++ A L+F+ + L QY+ ++ + RLR+ ++
Sbjct: 327 NPQLLSILIRFISDPTAPTWWGFLLAGLMFLSSTMQTLILHQYYHCIFVMALRLRTAIIG 386
Query: 405 AIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQLHGLWSAPFRITLSMVLLYQQ 464
I+RK L +T+ ++ G++ N+++ DA +S ++ LWSAP ++ L++ L+Q
Sbjct: 387 VIYRKALVITNSVKRESTVGEMVNLMSVDAQRFMDVSPFINLLWSAPLQVILAIYFLWQI 446
Query: 465 LGVASLLGSLMLVLMVPLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWE 524
LG ++L G ++VL++PL + KM+ + +++ D R+ L +EIL + +K YAWE
Sbjct: 447 LGPSALAGVAVIVLLIPLNGAVSMKMKTYQVKQMKFKDSRIKLMSEILNGIKVLKLYAWE 506
Query: 525 KSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSIPVVVTVVSFGTFTLLGGD--LTPAR 582
SF +V+ IR EL RK +L A ++FI P +VT+++ G + + L +
Sbjct: 507 PSFLEQVKGIRQSELQLLRKGAYLQAISTFIWICTPFLVTLITLGVYVYVDESNVLDAEK 566
Query: 583 AFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILMPNPPLEPELP--- 639
AF SLSLF +L+ PLNMLP L+S + A+VSL+R+++ L E L+P+
Sbjct: 567 AFVSLSLFNILKIPLNMLPQLISGLTQASVSLKRIQDFLNQNE--------LDPQCVERK 618
Query: 640 ------AVSIKNGNFSWDSK-SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELP 692
A++I NG F+W PTL ++N+ IP G+LVA+VG G GK+SLVSA+LGE+
Sbjct: 619 TISPGYAITIHNGTFTWAQDLPPTLHSLNIQIPKGALVAVVGPVGCGKSSLVSALLGEME 678
Query: 693 PLKDASVVIRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPD 752
L + V ++G+VAYVPQ +WI N TL++N+LFG +P +Y + ++ AL DLD+LP
Sbjct: 679 KL-EGVVSVKGSVAYVPQQAWIQNCTLQENVLFGQPMNPKRYQQALETCALLADLDVLPG 737
Query: 753 RDLTEIGERGVNISGGQKQRVSMARAV------------------------FNSCIKEE- 787
D TEIGE+G+N+SGGQ+QRVS+ARAV F+ I E
Sbjct: 738 GDQTEIGEKGINLSGGQRQRVSLARAVYSDANIFLLDDPLSAVDSHVAKHIFDQVIGPEG 797
Query: 788 -LRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLMENAGKMEEM 846
L GKTR+LVT+ + FLP D II+++ G + E G + L +H F + N E+
Sbjct: 798 VLAGKTRVLVTHGISFLPQTDFIIVLAGGQVSEMGHYSALLQHDGSFANFLRNYAPDEDQ 857
Query: 847 EEREEK-----------DDSINSNQEVSK-----------------------PVANRAV- 871
E+ E +D+++++ +++ V NR +
Sbjct: 858 EDHEAALQNANEEVLLLEDTLSTHTDLTDNEPAIYEVRKQFMREMSSLSSEGEVQNRTMP 917
Query: 872 --QVNEFPKNESYTKKGKRGRSVLVKQEERETGIVSGSVLTRYKNALGGPWVIMILFACY 929
N K TK + G L+K+E ETG V SV Y ++G + I Y
Sbjct: 918 KKHTNSLEKEALVTKTKETG--ALIKEEIAETGNVKLSVYWDYAKSMGLCTTLSICL-LY 974
Query: 930 LSTEVLRISSSTWLSFWTD--QSTSKNYNPGFYIAIYTILAFGQVTVTLLNSYWLIISSL 987
I ++ WLS W++ + + + +Y L Q + +L+++ +++ ++
Sbjct: 975 GGQSAAAIGANVWLSAWSNDAEEHGQQNKTSVRLGVYAALGILQGLLVMLSAFTMVVGAI 1034
Query: 988 RAAKRLHDSMLNSILRAPMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQLL 1047
+AA+ LH+++L++ +R+P FF T P GR++NRFS+D+ ID +A + M +N + +
Sbjct: 1035 QAARLLHEALLHNKIRSPQSFFDTTPSGRILNRFSKDIYVIDEVLAPTILMLLNSFFTSI 1094
Query: 1048 STFVLIGIVSTISLWAIMPLLILFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGL 1107
ST ++I + + + ++PL +L+ +Y +T+R++KRL+SI+RSP+++ F E + G
Sbjct: 1095 STIMVIVASTPLFMVVVLPLAVLYGFVQRFYVATSRQLKRLESISRSPIFSHFSETVTGT 1154
Query: 1108 STIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGIMIWLIATFAVMQN 1167
S IRA+ ++ +DNN + + +SNRWL + +E +G ++ A FAV+
Sbjct: 1155 SVIRAYGRIQDFKVLSDTKVDNNQKSSYPYIASNRWLGVHVEFVGNCVVLFAALFAVI-- 1212
Query: 1168 GRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAPGM 1227
GR +GL +SY L +T L+ ++R S E+++ AVERV Y +EAP +
Sbjct: 1213 GRNSLNPGL---VGLSVSYALQVTMALNWMIRMISDLESNIIAVERVKEYSKTKTEAPWV 1269
Query: 1228 VESNRPPPAWPSSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSML 1287
VESNR P WP+ G ++F + +RYRP L VL ++ V EKVGIVGRTGAGKSSM
Sbjct: 1270 VESNRAPEGWPTRGMVEFRNYSVRYRPGLELVLKNVTVHVQGGEKVGIVGRTGAGKSSMT 1329
Query: 1288 NALFRIVELERGE 1300
LFRI+E GE
Sbjct: 1330 LCLFRILEAAEGE 1342
|
May act as an inducible transporter in the biliary and intestinal excretion of organic anions. Acts as an alternative route for the export of bile acids and glucuronides from cholestatic hepatocytes. Mus musculus (taxid: 10090) |
| >sp|O88563|MRP3_RAT Canalicular multispecific organic anion transporter 2 OS=Rattus norvegicus GN=Abcc3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 658 bits (1697), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/1216 (32%), Positives = 639/1216 (52%), Gaps = 149/1216 (12%)
Query: 193 DYYSRITLYLYISMVFCQALFGILILVYIPNLDPYPGYTIMQPEFVDNAEYEALPGGEHV 252
D + T Y+Y ++V C IL P + PE +D +
Sbjct: 167 DPFRFTTFYIYFALVLCA-----FILSCFQEKPP-----LFSPENLDT----------NP 206
Query: 253 CPERNASILSRTSFGWMTPLLQLGYKKPITEKDVWKLDTWDQTEILIEKFHRCWIEESQR 312
CPE +A SR SF W T L LGY++P+ + D+W L D + ++++ W ++ +
Sbjct: 207 CPEASAGFFSRLSFWWFTKLAILGYRRPLEDSDLWSLSEEDCSHKVVQRLLEAWQKQQTQ 266
Query: 313 S---------------------------KPWLLRALNNSFGGRFWLGGLFKIGNDLSQFV 345
+ KP LRAL +F +G FK+ DLS
Sbjct: 267 ASGPQTAALEPKIAGEDEVLLKARPKTKKPSFLRALVRTFTSSLLMGACFKLIQDLSPSS 326
Query: 346 GPVLLNHLLQSMQRGDPAWIGYIYAFLIFVGVSFGVLTEAQYFQNVWRVGFRLRSTLVAA 405
+ P W G++ A L+FV + L Q++ ++ + R+R+ ++
Sbjct: 327 THSCSASSSGLFRPHGPYWWGFLLAGLMFVSSTMQTLILHQHYHCIFVMALRIRTAIIGV 386
Query: 406 IFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQLHGLWSAPFRITLSMVLLYQQL 465
I+RK L +T+ ++ + G++ N+++ DA +S ++ LWSAP ++ L++ L+Q L
Sbjct: 387 IYRKALTITNSVKREYTVGEMVNLMSVDAQRFMDVSPFINLLWSAPLQVILAIYFLWQIL 446
Query: 466 GVASLLGSLMLVLMVPLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEK 525
G ++L G ++VL++PL + KM+ + +++ D R+ L +EIL + +K YAWE
Sbjct: 447 GPSALAGVAVIVLLIPLNGAVSMKMKTYQVQQMKFKDSRIKLMSEILNGIKVLKLYAWEP 506
Query: 526 SFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSIPVVVTVVSFGTFTLLGGD--LTPARA 583
+F +V+ IR EL RK +L A ++FI P +VT+++ G + + + L +A
Sbjct: 507 TFLEQVEGIRQGELQLLRKGAYLQAISTFIWVCTPFMVTLITLGVYVCVDKNNVLDAEKA 566
Query: 584 FTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILMPNPPLEPEL----- 638
F SLSLF +L+ PLN+LP L+S + +VSL+R+++ L +E L+P+
Sbjct: 567 FVSLSLFNILKIPLNLLPQLISGMTQTSVSLKRIQDFLNQDE--------LDPQCVERKT 618
Query: 639 ----PAVSIKNGNFSWDSK-SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP 693
A++I NG FSW PTL +IN+ IP G+LVA+VG G GK+SLVSA+LGE+
Sbjct: 619 ISPGRAITIHNGTFSWSKDLPPTLHSINIQIPKGALVAVVGPVGCGKSSLVSALLGEMEK 678
Query: 694 LKDASVVIRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDR 753
L+ A V ++G+VAYVPQ +WI N TL++N+LFG +P +Y + ++ AL DLD+LP
Sbjct: 679 LEGA-VSVKGSVAYVPQQAWIQNCTLQENVLFGQPMNPKRYQQALETCALLADLDVLPGG 737
Query: 754 DLTEIGERGVNISGGQKQRVSMARAV------------------------FNSCIKEE-- 787
D TEIGE+G+N+SGGQ+QRVS+ARAV F+ I E
Sbjct: 738 DQTEIGEKGINLSGGQRQRVSLARAVYSDANIFLLDDPLSAVDSHVAKHIFDQVIGPEGV 797
Query: 788 LRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLMENAGKMEEME 847
L GKTR+LVT+ + FLP D II++++G I E G + EL +H F + N E E
Sbjct: 798 LAGKTRVLVTHGISFLPQTDFIIVLADGQITEMGHYSELLQHDGSFANFLRNYAPDENQE 857
Query: 848 EREEK-----------DDSINSNQEVS----------------------------KPVAN 868
E +D+++++ +++ +PV
Sbjct: 858 ANEGVLQHANEEVLLLEDTLSTHTDLTDTEPAIYEVRKQFMREMSSLSSEGEGQNRPVLK 917
Query: 869 RAVQVNEFPKNESYTKKGKRGRSVLVKQEERETGIVSGSVLTRYKNALGGPWVIMILFAC 928
R E + TK+ L+K+E ETG V SV Y ++G + LF C
Sbjct: 918 RYTSSLEKEVPATQTKE----TGALIKEEIAETGNVKLSVYWDYAKSVG---LCTTLFIC 970
Query: 929 --YLSTEVLRISSSTWLSFWTD--QSTSKNYNPGFYIAIYTILAFGQVTVTLLNSYWLII 984
Y + I ++ WLS WT+ + + N + +Y L Q + +L+++ +++
Sbjct: 971 LLYAGQNAVAIGANVWLSAWTNDVEEHGQQNNTSVRLGVYATLGILQGLLVMLSAFTMVV 1030
Query: 985 SSLRAAKRLHDSMLNSILRAPMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLW 1044
+++AA+ LH ++L++ +RAP FF T P GR++NRFS+D+ I +A + M N +
Sbjct: 1031 GAIQAARLLHTALLHNQIRAPQSFFDTTPSGRILNRFSKDIYVIHEVLAPTILMLFNSFY 1090
Query: 1045 QLLSTFVLIGIVSTISLWAIMPLLILFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEAL 1104
+ST V+I + + ++PL + + +Y +T+R++KRL+S++RSP+++ F E +
Sbjct: 1091 TSISTIVVIVASTPLFCVVVLPLAVFYGFVQRFYVATSRQLKRLESVSRSPIFSHFSETV 1150
Query: 1105 NGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGIMIWLIATFAV 1164
G S IRA+ ++ +D+N + T +SNRWL + +E +G ++ A FAV
Sbjct: 1151 TGTSVIRAYGRVQDFKVLSDAKVDSNQKTTYPYIASNRWLGVHVEFVGNCVVLFSALFAV 1210
Query: 1165 MQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEA 1224
+ GR +GL +SY L +T L+ ++R S E+++ AVERV Y +EA
Sbjct: 1211 I--GRNSLNPGL---VGLSVSYALQVTLSLNWMIRTLSDLESNIIAVERVKEYSKTETEA 1265
Query: 1225 PGMVESNRPPPAWPSSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKS 1284
P ++ESNR P WP SG ++F + +RYRP L VL L+ V EKVGIVGRTGAGKS
Sbjct: 1266 PWVLESNRAPEGWPRSGVVEFRNYSVRYRPGLELVLKNLTLHVQGGEKVGIVGRTGAGKS 1325
Query: 1285 SMLNALFRIVELERGE 1300
SM LFRI+E GE
Sbjct: 1326 SMTLCLFRILEAAEGE 1341
|
May act as an inducible transporter in the biliary and intestinal excretion of organic anions. Acts as an alternative route for the export of bile acids and glucuronides from cholestatic hepatocytes. Rattus norvegicus (taxid: 10116) |
| >sp|Q92887|MRP2_HUMAN Canalicular multispecific organic anion transporter 1 OS=Homo sapiens GN=ABCC2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 658 bits (1697), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/1180 (33%), Positives = 631/1180 (53%), Gaps = 153/1180 (12%)
Query: 258 ASILSRTSFGWMTPLLQLGYKKPITEKDVWKLDTWDQTEILIEKFHRCWIEESQRS---- 313
AS LS ++ W ++ GYK+P+T +DVW++D +T+ L+ KF E Q++
Sbjct: 198 ASFLSSITYSWYDSIILKGYKRPLTLEDVWEVDEEMKTKTLVSKFETHMKRELQKARRAL 257
Query: 314 -------------------------------------------------KPWLLRALNNS 324
K WL++AL +
Sbjct: 258 QRRQEKSSQQNSGARLPGLNKNQSQSQDALVLEDVEKKKKKSGTKKDVPKSWLMKALFKT 317
Query: 325 FGGRFWLGGLFKIGNDLSQFVGPVLLNHLLQ-SMQRGDPAWIGYIYAFLIFVGVSFGVLT 383
F L K+ ND+ FV P LL L+ + R WIGY+ A L+F
Sbjct: 318 FYMVLLKSFLLKLVNDIFTFVSPQLLKLLISFASDRDTYLWIGYLCAILLFTAALIQSFC 377
Query: 384 EAQYFQNVWRVGFRLRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQ 443
YFQ +++G ++R+ ++A++++K L L++ ARK + G+ N+++ DA L ++
Sbjct: 378 LQCYFQLCFKLGVKVRTAIMASVYKKALTLSNLARKEYTVGETVNLMSVDAQKLMDVTNF 437
Query: 444 LHGLWSAPFRITLSMVLLYQQLGVASLLGSLMLVLMVPLQTFIISKMRKLTKEGLQWTDR 503
+H LWS+ +I LS+ L+++LG + L G ++VL++P+ + +K + + + ++ D+
Sbjct: 438 MHMLWSSVLQIVLSIFFLWRELGPSVLAGVGVMVLVIPINAILSTKSKTIQVKNMKNKDK 497
Query: 504 RVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSIPVVV 563
R+ + NEIL+ + +K +AWE SF+ +VQ++R EL L F+ PV+V
Sbjct: 498 RLKIMNEILSGIKILKYFAWEPSFRDQVQNLRKKELKNLLAFSQLQCVVIFVFQLTPVLV 557
Query: 564 TVVSFGTFTLLGGD--LTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELL 621
+VV+F + L+ + L +AFTS++LF +LRFPL+MLP ++S ++ A+VS +RLE+ L
Sbjct: 558 SVVTFSVYVLVDSNNILDAQKAFTSITLFNILRFPLSMLPMMISSMLQASVSTERLEKYL 617
Query: 622 LAEERILMPNPPLEPEL---PAVSIKNGNFSWDSKS-PTLSNINLDIPVGSLVAIVGGTG 677
++ + + + A+ +F+W+ S T+ ++NLDI G LVA++G G
Sbjct: 618 GGDD---LDTSAIRHDCNFDKAMQFSEASFTWEHDSEATVRDVNLDIMAGQLVAVIGPVG 674
Query: 678 EGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKT 737
GK+SL+SAMLGE+ + + I+GT AYVPQ SWI N T++ NILFG+EF+ +Y +
Sbjct: 675 SGKSSLISAMLGEMENVH-GHITIKGTTAYVPQQSWIQNGTIKDNILFGTEFNEKRYQQV 733
Query: 738 VDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARA------------------- 778
++ AL DL++LP DL EIGE+G+N+SGGQKQR+S+ARA
Sbjct: 734 LEACALLPDLEMLPGGDLAEIGEKGINLSGGQKQRISLARATYQNLDIYLLDDPLSAVDA 793
Query: 779 -----VFNSCIKEE--LRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEE-LSKHG 830
+FN + L+GKTR+LVT+ +HFLP VD I+++ G I E+GS+ L+K G
Sbjct: 794 HVGKHIFNKVLGPNGLLKGKTRLLVTHSMHFLPQVDEIVVLGNGTIVEKGSYSALLAKKG 853
Query: 831 RLFQKL---MENAGKMEEM---EEREEKDDS---INSNQEVSKPVAN------------- 868
+ L + + G EE + EE+DD I+S +E+ + A+
Sbjct: 854 EFAKNLKTFLRHTGPEEEATVHDGSEEEDDDYGLISSVEEIPEDAASITMRRENSFRRTL 913
Query: 869 ------------------RAVQVNEFPKNESYTKKGKRGRSVLVKQEERETGIVSGSVLT 910
+ VN ++E K K L+K+E ETG V S+
Sbjct: 914 SRSSRSNGRHLKSLRNSLKTRNVNSLKEDEELVKGQK-----LIKKEFIETGKVKFSIYL 968
Query: 911 RYKNALGGPWVIMILFACYLSTEVLRISSSTWLSFWTDQSTSKNYNPGFY--------IA 962
Y A+G + I+ A ++ V I S+ WLS WT S SK +N Y +
Sbjct: 969 EYLQAIGLFSIFFIILA-FVMNSVAFIGSNLWLSAWT--SDSKIFNSTDYPASQRDMRVG 1025
Query: 963 IYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILRAPMLFFHTNPIGRVINRFS 1022
+Y L Q + +W + A+ LH +LN+ILRAPM FF T P GR++NRF+
Sbjct: 1026 VYGALGLAQGIFVFIAHFWSAFGFVHASNILHKQLLNNILRAPMRFFDTTPTGRIVNRFA 1085
Query: 1023 RDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLILFYAAYLYYQSTA 1082
D+ +D + + ++ ++ST V+I + + + ++PL I++ + ++Y ST+
Sbjct: 1086 GDISTVDDTLPQSLRSWITCFLGIISTLVMICMATPVFTIIVIPLGIIYVSVQMFYVSTS 1145
Query: 1083 REVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNR 1142
R+++RLDS+TRSP+Y+ F E ++GL IRAF+ R K N +D N + + +SNR
Sbjct: 1146 RQLRRLDSVTRSPIYSHFSETVSGLPVIRAFEHQQRFLKHNEVRIDTNQKCVFSWITSNR 1205
Query: 1143 WLTIRLETLGGIMIWLIATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQAS 1202
WL IRLE +G + ++ A V+ T+G +LS LNIT L+ ++R S
Sbjct: 1206 WLAIRLELVGNLTVFFSALMMVIYRDTLS-----GDTVGFVLSNALNITQTLNWLVRMTS 1260
Query: 1203 RAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSGSIKFEDVVLRYRPELPPVLHG 1262
E ++ AVER+ Y + +EAP V RPPP WPS G I+F + +RYRPEL VL G
Sbjct: 1261 EIETNIVAVERITEYTKVENEAP-WVTDKRPPPDWPSKGKIQFNNYQVRYRPELDLVLRG 1319
Query: 1263 LSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302
++ + EK+G+VGRTGAGKSS+ N LFRI+E G+ I
Sbjct: 1320 ITCDIGSMEKIGVVGRTGAGKSSLTNCLFRILEAAGGQII 1359
|
Mediates hepatobiliary excretion of numerous organic anions. May function as a cellular cisplatin transporter. Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1303 | ||||||
| 255571322 | 1626 | mgatp-energized glutathione s-conjugate | 0.976 | 0.782 | 0.800 | 0.0 | |
| 224078860 | 1607 | multidrug resistance protein ABC transpo | 0.973 | 0.789 | 0.772 | 0.0 | |
| 225443998 | 1624 | PREDICTED: ABC transporter C family memb | 0.973 | 0.781 | 0.775 | 0.0 | |
| 75333513 | 1495 | RecName: Full=ABC transporter C family m | 0.970 | 0.845 | 0.756 | 0.0 | |
| 297845974 | 1495 | ATMRP13 [Arabidopsis lyrata subsp. lyrat | 0.970 | 0.845 | 0.754 | 0.0 | |
| 225443996 | 1623 | PREDICTED: ABC transporter C family memb | 0.973 | 0.781 | 0.752 | 0.0 | |
| 359483925 | 1616 | PREDICTED: ABC transporter C family memb | 0.968 | 0.780 | 0.748 | 0.0 | |
| 356555514 | 1620 | PREDICTED: ABC transporter C family memb | 0.973 | 0.782 | 0.736 | 0.0 | |
| 356549118 | 1620 | PREDICTED: ABC transporter C family memb | 0.973 | 0.782 | 0.735 | 0.0 | |
| 356517706 | 1615 | PREDICTED: ABC transporter C family memb | 0.975 | 0.786 | 0.726 | 0.0 |
| >gi|255571322|ref|XP_002526610.1| mgatp-energized glutathione s-conjugate pump, putative [Ricinus communis] gi|223534050|gb|EEF35769.1| mgatp-energized glutathione s-conjugate pump, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2156 bits (5587), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1043/1303 (80%), Positives = 1151/1303 (88%), Gaps = 31/1303 (2%)
Query: 27 MASGPLDWYCRPVANGTWAKTVDSTFGAYTTCAVDSLVISISHSVLLGLCIFRIWLMNKN 86
MA PLDWYCRPVANG WAK VDS FGAYT CA+DSLVI ISH VL+GLC +RIWL+ KN
Sbjct: 1 MALEPLDWYCRPVANGVWAKEVDSAFGAYTPCAIDSLVICISHLVLMGLCFYRIWLIKKN 60
Query: 87 SKARRYRLSSNCYNYMLGLLACYCTAEPLLRLVMGISIFNLDGETSFAPFEMVSLIIEAL 146
SKA +Y L + YNY+LGLL YCTAEPL R+VM ISIFNLDG+T+ APFEMVSLIIEAL
Sbjct: 61 SKAVKYSLRTKYYNYLLGLLVGYCTAEPLFRMVMDISIFNLDGQTNLAPFEMVSLIIEAL 120
Query: 147 AWCSMLIMICLETKFYIREFRWYVRFGVIYVLVGDAVILNLIIPMRDYYSRITLYLYISM 206
WCSMLIMI LETK YIR+FRWYVRFGVIYVLVG+A +LN I+ M YY+R TLY YIS
Sbjct: 121 TWCSMLIMIGLETKVYIRQFRWYVRFGVIYVLVGEAAMLNTILSMTAYYNRFTLYTYISA 180
Query: 207 VFCQALFGILILVYIPNLDPYPGYTIMQPEFVDNAEYEALPGGEHVCPERNASILSRTSF 266
V CQ LFG+L+LVY+PNLDPYPGY+I+QPE +N EYEALPGGEH CPER+ ++ SR F
Sbjct: 181 VVCQVLFGLLLLVYVPNLDPYPGYSILQPESPENGEYEALPGGEH-CPERHVNLFSRIYF 239
Query: 267 GWMTPLLQLGYKKPITEKDVWKLDTWDQTEILIEKFHRCWIEESQRSKPWLLRALNNSFG 326
GWMTPL+Q GYKKPITEKDVWKLDTWDQTE LI+KF RCWI+ESQ+ KPWLLRALNNS G
Sbjct: 240 GWMTPLMQQGYKKPITEKDVWKLDTWDQTETLIKKFQRCWIKESQKPKPWLLRALNNSLG 299
Query: 327 GRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPAWIGYIYAFLIFVGVSFGVLTEAQ 386
RFWLGG FKIGNDLSQFVGPVLLNHLLQSMQ+GD WIGY+YAF IFVGVS GVL E+Q
Sbjct: 300 RRFWLGGFFKIGNDLSQFVGPVLLNHLLQSMQQGDATWIGYVYAFSIFVGVSLGVLCESQ 359
Query: 387 YFQNVWRVGFRLRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQLHG 446
YFQNV R GFRLRSTLVAAIFRK+LRLTHE+RK FPSGK+TNMITTDAN+LQQI QQLHG
Sbjct: 360 YFQNVMRTGFRLRSTLVAAIFRKSLRLTHESRKNFPSGKITNMITTDANSLQQICQQLHG 419
Query: 447 LWSAPFRITLSMVLLYQQLGVASLLGSLMLVLMVPLQTFIISKMRKLTKEGLQWTDRRVS 506
LWSAPFRIT+SMVLLYQQLGVASLLGSL+LVLMVP+QTF+IS+MRKLTKEGLQ TD+RVS
Sbjct: 420 LWSAPFRITMSMVLLYQQLGVASLLGSLILVLMVPIQTFVISRMRKLTKEGLQRTDKRVS 479
Query: 507 LTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSIPVVVTVV 566
L NEILAAMDTVKCYAWEKSFQS+VQ+IR+DELSWFR AQ LSAFNSFILNSIPVVVT+V
Sbjct: 480 LMNEILAAMDTVKCYAWEKSFQSKVQNIRNDELSWFRNAQLLSAFNSFILNSIPVVVTLV 539
Query: 567 SFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEER 626
SFGTFTLLGGDLTPARAFTSLSLF VLRFPLNMLPNLLSQVVNANVSLQRLEEL LAEER
Sbjct: 540 SFGTFTLLGGDLTPARAFTSLSLFQVLRFPLNMLPNLLSQVVNANVSLQRLEELFLAEER 599
Query: 627 ILMPNPPLEPELPAVSIKNGNFSWDSKSP--TLSNINLDIPVGSLVAIVGGTGEGKTSLV 684
IL PNP L+PELPA+SIK+G FSWDSKS TLSNINLDIP GSLVAIVGGTGEGKTSL+
Sbjct: 600 ILAPNPSLQPELPAISIKDGYFSWDSKSEKHTLSNINLDIPAGSLVAIVGGTGEGKTSLI 659
Query: 685 SAMLGELPPLKDASVVIRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQ 744
SAMLGELPP+ + +VIRGTVAYVPQ+SWIFNAT+R NILFGSEF+P++YW+T+DV+AL
Sbjct: 660 SAMLGELPPVANTGIVIRGTVAYVPQVSWIFNATVRDNILFGSEFEPSRYWQTIDVTALH 719
Query: 745 HDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAV------------------------F 780
HDLDLLP RDLTEIGERGVNISGGQKQRVSMARAV F
Sbjct: 720 HDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVF 779
Query: 781 NSCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLMENA 840
NSCIKE LRGKTR+LVTNQLHFLP VDRIILVSEGMIKEEG+FEELSK G+LFQKLMENA
Sbjct: 780 NSCIKEALRGKTRVLVTNQLHFLPQVDRIILVSEGMIKEEGTFEELSKSGKLFQKLMENA 839
Query: 841 GKMEEMEEREE-KDDSINSNQEVSKPVANRAVQVNEFPKNESYTKKGKRGRSVLVKQEER 899
GKMEE++E+EE ++DS N + E SKP AN ++NE +N KKGK +SVLVKQEER
Sbjct: 840 GKMEEIKEQEEGQEDSKNLDNESSKPAAN---ELNELTQNVGQMKKGKGRKSVLVKQEER 896
Query: 900 ETGIVSGSVLTRYKNALGGPWVIMILFACYLSTEVLRISSSTWLSFWTDQSTSKNYNPGF 959
ETG+VS VL RYKNALGG +V+M+LFA Y+STEVLR+SSSTWLSFWT QSTS+ Y P +
Sbjct: 897 ETGVVSWKVLMRYKNALGGTFVVMVLFAFYISTEVLRVSSSTWLSFWTKQSTSEGYRPAY 956
Query: 960 YIAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILRAPMLFFHTNPIGRVIN 1019
YI IY +L+ GQVTVTL NSYWLI SSLRAA++LHD+MLNSIL+APMLFFHTNP GRVIN
Sbjct: 957 YIFIYALLSLGQVTVTLSNSYWLINSSLRAARKLHDAMLNSILQAPMLFFHTNPTGRVIN 1016
Query: 1020 RFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLILFYAAYLYYQ 1079
RF++DLG+IDRNVA+F NMF+NQ++QLLSTF LIGIVST+SLWAIMPLLILFYAAYLYYQ
Sbjct: 1017 RFAKDLGEIDRNVANFANMFLNQVFQLLSTFALIGIVSTVSLWAIMPLLILFYAAYLYYQ 1076
Query: 1080 STAREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTS 1139
ST+REVKRLDSITRSPVYAQFGEALNGLS+IRA+KAYDRMA I+GKSMDNNIRFTL N S
Sbjct: 1077 STSREVKRLDSITRSPVYAQFGEALNGLSSIRAYKAYDRMANISGKSMDNNIRFTLVNIS 1136
Query: 1140 SNRWLTIRLETLGGIMIWLIATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLR 1199
SNRWLTIRLETLGGIMIWL A+FAV+QN R EN+VAFASTMGLLLSYTLNITNLLS VLR
Sbjct: 1137 SNRWLTIRLETLGGIMIWLTASFAVLQNSRTENKVAFASTMGLLLSYTLNITNLLSNVLR 1196
Query: 1200 QASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSGSIKFEDVVLRYRPELPPV 1259
QASRAENS N+VER GTYID+PSEAP ++ESNRPPPAWPSSGSI F DVVLRYR ELPPV
Sbjct: 1197 QASRAENSFNSVERAGTYIDMPSEAPAVIESNRPPPAWPSSGSINFRDVVLRYRSELPPV 1256
Query: 1260 LHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302
LHGLSF+VSPSEK+GI GRTGAGKSSMLNALFRIVELERGE I
Sbjct: 1257 LHGLSFSVSPSEKLGIAGRTGAGKSSMLNALFRIVELERGEVI 1299
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224078860|ref|XP_002305657.1| multidrug resistance protein ABC transporter family [Populus trichocarpa] gi|222848621|gb|EEE86168.1| multidrug resistance protein ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 2080 bits (5389), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1005/1301 (77%), Positives = 1131/1301 (86%), Gaps = 33/1301 (2%)
Query: 27 MASGPLDWYCRPVANGTWAKTVDSTFGAYTTCAVDSLVISISHSVLLGLCIFRIWLM-NK 85
M L WYCRP+ANG WAK VD+ FGAYT CA+DS+VI ISH VLLGLC++RIWL+ +
Sbjct: 1 MGLEALVWYCRPMANGVWAKEVDNAFGAYTPCAIDSIVICISHLVLLGLCLYRIWLIIDN 60
Query: 86 NSKARRYRLSSNCYNYMLGLLACYCTAEPLLRLVMGISIFNLDGETSFAPFEMVSLIIEA 145
N+K ++Y L +N YNYMLG LA YCT +PLLRL M +SIFNLDG+TS APFE+VSLI+EA
Sbjct: 61 NTKVQKYCLRTNYYNYMLGFLAAYCTVQPLLRLFMDVSIFNLDGQTSLAPFELVSLIVEA 120
Query: 146 LAWCSMLIMICLETKFYIREFRWYVRFGVIYVLVGDAVILNLIIPMRDYYSRITLYLYIS 205
LAWCS LIMI LETK YIR+FRWYVRFGVIYVLVG+A +LNLI+ + DYYSR TLY+YIS
Sbjct: 121 LAWCSTLIMIGLETKIYIRQFRWYVRFGVIYVLVGEAAMLNLILSVSDYYSRFTLYMYIS 180
Query: 206 MVFCQALFGILILVYIPNLDPYPGYTIMQPEFVDNAEYEALPGGEHVCPERNASILSRTS 265
VFCQ L GIL+LVYIPNLDPYP Y +M+ E +DN EYEALPG E +CPER+A++ SR
Sbjct: 181 TVFCQVLLGILLLVYIPNLDPYPDYVMMESESLDNCEYEALPGREQICPERHANLFSRIF 240
Query: 266 FGWMTPLLQLGYKKPITEKDVWKLDTWDQTEILIEKFHRCWIEESQRSKPWLLRALNNSF 325
FGW+TPL++ G+K+PITEKDVWKLDTWDQTE LI+KF CW+EES+R KP LLRALNNS
Sbjct: 241 FGWLTPLMKQGHKRPITEKDVWKLDTWDQTETLIKKFQTCWVEESKRPKPRLLRALNNSL 300
Query: 326 GGRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPAWIGYIYAFLIFVGVSFGVLTEA 385
GGRFWLGG FKIG DLSQFVGP++L+HLLQSMQRGDPAWIGYIYAF+IF+GV FG L E+
Sbjct: 301 GGRFWLGGFFKIGYDLSQFVGPIVLSHLLQSMQRGDPAWIGYIYAFIIFLGVLFGALCES 360
Query: 386 QYFQNVWRVGFRLRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQLH 445
Q+FQNV RVGF+LRSTLVAAIFRK+L+LTHE RK FPSGK+TNMITTDANALQQI QQLH
Sbjct: 361 QFFQNVMRVGFQLRSTLVAAIFRKSLKLTHEGRKNFPSGKITNMITTDANALQQICQQLH 420
Query: 446 GLWSAPFRITLSMVLLYQQLGVASLLGSLMLVLMVPLQTFIISKMRKLTKEGLQWTDRRV 505
GLWSAPFRIT+SMVLLYQQLGVASL GSLMLVLMVP QT ++SKMRKLTKEGL TD+RV
Sbjct: 421 GLWSAPFRITISMVLLYQQLGVASLFGSLMLVLMVPTQTILMSKMRKLTKEGLHRTDKRV 480
Query: 506 SLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSIPVVVTV 565
SL NEILAAMD VKCYAWEKSFQSR+QS+RDDELSWFR AQ LSAFNSFILN IPV+VT+
Sbjct: 481 SLMNEILAAMDAVKCYAWEKSFQSRIQSVRDDELSWFRGAQLLSAFNSFILNIIPVIVTL 540
Query: 566 VSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEE 625
VSFGTFTLLGGDLTPARAFTSLSLF VLR PLNMLPNLLSQVVNAN+SLQRLEEL LAEE
Sbjct: 541 VSFGTFTLLGGDLTPARAFTSLSLFQVLRSPLNMLPNLLSQVVNANISLQRLEELFLAEE 600
Query: 626 RILMPNPPLEPELPAVSIKNGNFSWDSK--SPTLSNINLDIPVGSLVAIVGGTGEGKTSL 683
RIL PN PL+ +PA+SI+NGNF WDSK PTLS+INL I VGSLVAIVGGTGEGKTSL
Sbjct: 601 RILAPNLPLKLGIPAISIENGNFLWDSKLEKPTLSDINLKIQVGSLVAIVGGTGEGKTSL 660
Query: 684 VSAMLGELPPLKDASVVIRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSAL 743
+SAMLGELPP++DASVVIRGTVAYVPQ+SWIFNAT+R NILFGSE++P++YWK +DV+AL
Sbjct: 661 ISAMLGELPPMEDASVVIRGTVAYVPQVSWIFNATVRDNILFGSEYEPSRYWKAIDVTAL 720
Query: 744 QHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARA------------------------V 779
QHDLDLLP DLTEIGERGVNISGGQKQRVSMARA V
Sbjct: 721 QHDLDLLPGHDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQV 780
Query: 780 FNSCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLMEN 839
FNSCIK+EL+GKTR+LVTNQLHFLP VD+IIL+SEGMIKEEG+FEELSK+G+LFQKLMEN
Sbjct: 781 FNSCIKDELQGKTRVLVTNQLHFLPQVDKIILLSEGMIKEEGTFEELSKNGKLFQKLMEN 840
Query: 840 AGKMEEMEEREEKDDSINSNQEVSKPVANRAVQVNEFPKNESYTKKGKRGRSVLVKQEER 899
AGKM+E+ E + +S N + + SKP ANR N+ P+ Y K K G+SVL+KQEER
Sbjct: 841 AGKMDELVEEK---NSENLDYKSSKPAANRG---NDLPQKAGYKMKVKGGKSVLIKQEER 894
Query: 900 ETGIVSGSVLTRYKNALGGPWVIMILFACYLSTEVLRISSSTWLSFWTDQSTSKNYNPGF 959
ETG+VS +VL RY NALGG WV++I+F CYL TEVLR+S STWLSFWT+QST ++Y PG+
Sbjct: 895 ETGVVSWNVLIRYNNALGGIWVVLIIFLCYLLTEVLRVSRSTWLSFWTNQSTLESYKPGY 954
Query: 960 YIAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILRAPMLFFHTNPIGRVIN 1019
YI +Y +L+FGQV VTL+NSYWLI SSL AAKRLHD+ML+SILRAPMLFFHTNP GR+IN
Sbjct: 955 YIFVYALLSFGQVIVTLVNSYWLISSSLHAAKRLHDAMLDSILRAPMLFFHTNPSGRIIN 1014
Query: 1020 RFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLILFYAAYLYYQ 1079
RF++DLG+IDRNVA+F N F+NQ WQL STFVLIGIVSTISLWA+MPLLILFY+AYLYYQ
Sbjct: 1015 RFAKDLGEIDRNVANFANNFLNQAWQLFSTFVLIGIVSTISLWAVMPLLILFYSAYLYYQ 1074
Query: 1080 STAREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTS 1139
ST+REVKRLDSITRSPVYAQFGEALNGLS+IRA+KAYD MA INGKSMDNNIRFTL N S
Sbjct: 1075 STSREVKRLDSITRSPVYAQFGEALNGLSSIRAYKAYDWMAIINGKSMDNNIRFTLVNMS 1134
Query: 1140 SNRWLTIRLETLGGIMIWLIATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLR 1199
SN WLTIRL TLGGIMIWLIATFAV+ NGR EN V FAS MGLLLSYTLNIT LLS VLR
Sbjct: 1135 SNHWLTIRLVTLGGIMIWLIATFAVLGNGRTENHVEFASEMGLLLSYTLNITGLLSNVLR 1194
Query: 1200 QASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSGSIKFEDVVLRYRPELPPV 1259
ASRAENSLN+VERVGTY+DLPSEAP +VE+NRPPPAWPSSGSIKF DVVLRYRPELPPV
Sbjct: 1195 HASRAENSLNSVERVGTYMDLPSEAPAIVETNRPPPAWPSSGSIKFRDVVLRYRPELPPV 1254
Query: 1260 LHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
LH LSF VSPSEK+GIVGRTGAGKSSMLNALFRIVELERGE
Sbjct: 1255 LHHLSFEVSPSEKLGIVGRTGAGKSSMLNALFRIVELERGE 1295
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225443998|ref|XP_002281070.1| PREDICTED: ABC transporter C family member 2-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2067 bits (5356), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1007/1299 (77%), Positives = 1131/1299 (87%), Gaps = 30/1299 (2%)
Query: 27 MASGPLDWYCRPVANGTWAKTVDSTFGAYTTCAVDSLVISISHSVLLGLCIFRIWLMNKN 86
MA PL WYC+PVANG WAK +S FG YT CAVDS+V+ ISH VLLGLC +RIWL+ +
Sbjct: 1 MAFEPLVWYCQPVANGVWAKAAESAFGPYTPCAVDSIVVCISHLVLLGLCCYRIWLIKMD 60
Query: 87 SKARRYRLSSNCYNYMLGLLACYCTAEPLLRLVMGISIFNLDGETSFAPFEMVSLIIEAL 146
K +R+ L SN YNYMLGLLACYCTAEPL RLVMG+SIF+LD +T AP+E+VSLIIEA
Sbjct: 61 FKVQRFCLQSNYYNYMLGLLACYCTAEPLFRLVMGVSIFDLDEQTGLAPYEIVSLIIEAA 120
Query: 147 AWCSMLIMICLETKFYIREFRWYVRFGVIYVLVGDAVILNLIIPMRDYYSRITLYLYISM 206
WCSML+MI +ETK YIR+FRWYVRFGVIY+LVGDAV+LNLI+ ++D YSR LY IS
Sbjct: 121 TWCSMLVMIGVETKIYIRQFRWYVRFGVIYLLVGDAVMLNLILSLKDSYSRSVLYPPISS 180
Query: 207 VFCQALFGILILVYIPNLDPYPGYTIMQPEFVDNAEYEALPGGEHVCPERNASILSRTSF 266
V CQ LFGI +LV++PNL+PY GYT MQ + ++N +YE LPGG+ +CPE++A++ SR F
Sbjct: 181 VLCQVLFGICLLVHVPNLNPYVGYTPMQSDSLENTKYEVLPGGDQICPEKHANMFSRIYF 240
Query: 267 GWMTPLLQLGYKKPITEKDVWKLDTWDQTEILIEKFHRCWIEESQRSKPWLLRALNNSFG 326
GWMTPL+Q GYKKPITEKD+WKLDTWDQTE L +F +CWIEESQRSKP LLRALN S G
Sbjct: 241 GWMTPLMQQGYKKPITEKDIWKLDTWDQTETLSRRFQKCWIEESQRSKPRLLRALNCSLG 300
Query: 327 GRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPAWIGYIYAFLIFVGVSFGVLTEAQ 386
GRFW GG FKIGNDLSQFVGPVLLNHLLQSMQRGDPAWIGYIYAF IF+GVS GVL EAQ
Sbjct: 301 GRFWRGGFFKIGNDLSQFVGPVLLNHLLQSMQRGDPAWIGYIYAFSIFIGVSLGVLCEAQ 360
Query: 387 YFQNVWRVGFRLRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQLHG 446
YFQNV RVGFRLRSTLVAAIFRK+LRLTHE RK FPSGK+TNM+TTDANALQQI QQLH
Sbjct: 361 YFQNVMRVGFRLRSTLVAAIFRKSLRLTHEGRKNFPSGKITNMMTTDANALQQICQQLHA 420
Query: 447 LWSAPFRITLSMVLLYQQLGVASLLGSLMLVLMVPLQTFIISKMRKLTKEGLQWTDRRVS 506
LWSAPFRI ++MVLLYQQLGVASLLGSLML+LM+P+QTFIISKMRKL+KEGLQ TD+RVS
Sbjct: 421 LWSAPFRIIIAMVLLYQQLGVASLLGSLMLLLMLPIQTFIISKMRKLSKEGLQRTDKRVS 480
Query: 507 LTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSIPVVVTVV 566
L NEILAAMDTVKCYAWEKSFQS+VQS+R+DELSWFRKAQ LSA NSFILNSIPV+VTV
Sbjct: 481 LMNEILAAMDTVKCYAWEKSFQSKVQSMRNDELSWFRKAQLLSACNSFILNSIPVIVTVT 540
Query: 567 SFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEER 626
SFG FTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNL++QVV A+VS+QRLE+L L EER
Sbjct: 541 SFGAFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLITQVVTAHVSIQRLEQLFLTEER 600
Query: 627 ILMPNPPLEPELPAVSIKNGNFSWDSK--SPTLSNINLDIPVGSLVAIVGGTGEGKTSLV 684
+L PNP LEP LPA+SIK+G FSWDSK PTLSNINLDIPVGSLVA+VGGTGEGKTSL+
Sbjct: 601 VLAPNPTLEPGLPAISIKDGYFSWDSKVEKPTLSNINLDIPVGSLVAVVGGTGEGKTSLI 660
Query: 685 SAMLGELPPLKDASVVIRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQ 744
SAMLGELPPL DASVVIRGTVAYVPQISWIFNAT+R NILFGS+F+PA+YWK +DV+ LQ
Sbjct: 661 SAMLGELPPLSDASVVIRGTVAYVPQISWIFNATVRGNILFGSDFEPARYWKAIDVTELQ 720
Query: 745 HDLDLLPDRDLTEIGERGVNISGGQKQRVSMARA------------------------VF 780
HDLDLLP DLTEIGERGVNISGGQKQRVSMARA VF
Sbjct: 721 HDLDLLPGHDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVAQQVF 780
Query: 781 NSCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLMENA 840
++CIKEEL+GKTR+LVTNQLHFLPHVDRIILVS+G +KE+G+F++LSK+ +LFQKLMENA
Sbjct: 781 SNCIKEELKGKTRVLVTNQLHFLPHVDRIILVSDGTVKEDGTFDDLSKNSKLFQKLMENA 840
Query: 841 GKMEEMEEREEKDDSINSNQEVSKPVANRAVQVNEFPKNESYTKKGKRGRSVLVKQEERE 900
GKMEE E E +++++N+ SKP N +VNE PKN ++ KGK G+SVL+KQEERE
Sbjct: 841 GKMEEQVEENECRENLSNNK--SKPTTNG--EVNELPKNAIHSNKGKEGKSVLIKQEERE 896
Query: 901 TGIVSGSVLTRYKNALGGPWVIMILFACYLSTEVLRISSSTWLSFWTDQSTSKNYNPGFY 960
TGIVS VL RYK+ALGG WV+ +LFACY+ TEVLR+ SSTWLS WTDQS SK+Y PG+Y
Sbjct: 897 TGIVSWKVLMRYKDALGGLWVVTLLFACYVLTEVLRVLSSTWLSVWTDQSMSKDYRPGYY 956
Query: 961 IAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILRAPMLFFHTNPIGRVINR 1020
IY +L+FGQV VTL NS+WLI SSL AAK LH+ MLNSILRAPM+FFHTNPIGR+INR
Sbjct: 957 NLIYALLSFGQVMVTLGNSFWLITSSLHAAKILHNVMLNSILRAPMVFFHTNPIGRIINR 1016
Query: 1021 FSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLILFYAAYLYYQS 1080
F++DLGDIDRNVA NMF+ Q+WQLLSTFVLI IVSTISLWAIMPLLILFYAAYLYYQS
Sbjct: 1017 FAKDLGDIDRNVAPSANMFLGQVWQLLSTFVLIAIVSTISLWAIMPLLILFYAAYLYYQS 1076
Query: 1081 TAREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSS 1140
T+REVKRLDSITRSPVYAQFGEALNGLSTIRA+KAYDRMA INGKSMDNNIRFTLAN SS
Sbjct: 1077 TSREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMASINGKSMDNNIRFTLANISS 1136
Query: 1141 NRWLTIRLETLGGIMIWLIATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQ 1200
NRWLTIRLETLGG+MI L ATFAVM+N R EN AFASTMGLLLSYTLNIT+LLSGVLRQ
Sbjct: 1137 NRWLTIRLETLGGLMICLTATFAVMENSREENPAAFASTMGLLLSYTLNITSLLSGVLRQ 1196
Query: 1201 ASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSGSIKFEDVVLRYRPELPPVL 1260
ASRAENS NAVERVGTY+DLPSEAP ++ESNRPPP WPSSGSI+FEDVVLRYRPELPPVL
Sbjct: 1197 ASRAENSFNAVERVGTYVDLPSEAPTIIESNRPPPGWPSSGSIRFEDVVLRYRPELPPVL 1256
Query: 1261 HGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERG 1299
HG+SF +SPSEK+GIVGRTGAGKSSM+NALFRIVELERG
Sbjct: 1257 HGISFKISPSEKLGIVGRTGAGKSSMINALFRIVELERG 1295
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|75333513|sp|Q9C8H0.1|AB12C_ARATH RecName: Full=ABC transporter C family member 12; Short=ABC transporter ABCC.12; Short=AtABCC12; AltName: Full=ATP-energized glutathione S-conjugate pump 13; AltName: Full=Glutathione S-conjugate-transporting ATPase 13; AltName: Full=Multidrug resistance-associated protein 13 gi|12322126|gb|AAG51100.1|AC025295_8 ABC transporter, putative [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 2020 bits (5234), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 983/1300 (75%), Positives = 1123/1300 (86%), Gaps = 36/1300 (2%)
Query: 27 MASGPLDWYCRPVANGTWAKTVDSTFGAYTTCAVDSLVISISHSVLLGLCIFRIWLMNKN 86
M L+WYC+PVA+G W K VD FGAYT CA+DSLV+ +SH VLLGLC +RIW++ N
Sbjct: 1 MGFEALNWYCKPVADGFWEKAVDGAFGAYTPCAIDSLVMLVSHFVLLGLCFYRIWIIFHN 60
Query: 87 SKARRYRLSSNCYNYMLGLLACYCTAEPLLRLVMGISIFNLDGETSFAPFEMVSLIIEAL 146
+KA+ Y L YN +LGLLACYC EP+LRLVMGIS+F++D ET F PFE+ SL++EA
Sbjct: 61 TKAQIYVLRKKYYNCVLGLLACYCVVEPVLRLVMGISLFDMDEETDFPPFEVASLMVEAF 120
Query: 147 AWCSMLIMICLETKFYIREFRWYVRFGVIYVLVGDAVILNLIIPMRDYYSRITLYLYISM 206
AW SML++I LETK Y++EFRWYVRFGV+YVLV DAV+L+L++P+++ +R LYL+IS
Sbjct: 121 AWFSMLVLIGLETKQYVKEFRWYVRFGVLYVLVADAVLLDLVLPLKNSINRTALYLFISS 180
Query: 207 VFCQALFGILILVYIPNLDPYPGYTIMQPEFVDNAEYEALPGGEHVCPERNASILSRTSF 266
QALFGIL+L+YIP LDPYPGY I+ E +DN EY+AL GGEH+CPER+ASI SR F
Sbjct: 181 RCSQALFGILLLIYIPELDPYPGYHIVNNEPLDNVEYDALRGGEHICPERHASIFSRIYF 240
Query: 267 GWMTPLLQLGYKKPITEKDVWKLDTWDQTEILIEKFHRCWIEESQRSKPWLLRALNNSFG 326
GW+TPL+QLGY+KPITEKDVW+LD WDQTE LI++F RCW EES+R KPWLLRALNNS G
Sbjct: 241 GWITPLMQLGYRKPITEKDVWQLDKWDQTETLIKRFQRCWTEESRRPKPWLLRALNNSLG 300
Query: 327 GRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPAWIGYIYAFLIFVGVSFGVLTEAQ 386
GRFWL G+FKIGNDLSQFVGPV+L+HLL+SMQ GDPAW+GY+YAF+IFVGV+ GVL EAQ
Sbjct: 301 GRFWLAGIFKIGNDLSQFVGPVILSHLLRSMQEGDPAWVGYVYAFIIFVGVTLGVLCEAQ 360
Query: 387 YFQNVWRVGFRLRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQLHG 446
YFQNVWRVGFRLRSTLVAAIF K+LRLTHEARK F SGKVTNMITTDANALQQISQQLHG
Sbjct: 361 YFQNVWRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQISQQLHG 420
Query: 447 LWSAPFRITLSMVLLYQQLGVASLLGSLMLVLMVPLQTFIISKMRKLTKEGLQWTDRRVS 506
LWSAPFRI +SM+LLYQQLGVASL GSL+L L++PLQT IISKMRKLTKEGLQWTD+RV
Sbjct: 421 LWSAPFRIIVSMILLYQQLGVASLFGSLILFLLIPLQTLIISKMRKLTKEGLQWTDKRVG 480
Query: 507 LTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSIPVVVTVV 566
+TNEIL++MDTVKCYAWEKSF+SR+Q IR++ELSWFRKAQ LSAFNSFILNSIPVVVTVV
Sbjct: 481 ITNEILSSMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIPVVVTVV 540
Query: 567 SFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEER 626
SFG F LLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQR+EELLL+EER
Sbjct: 541 SFGVFVLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRIEELLLSEER 600
Query: 627 ILMPNPPLEPELPAVSIKNGNFSWDSKS--PTLSNINLDIPVGSLVAIVGGTGEGKTSLV 684
IL NPPL+P PA+SIKNG FSWDSK+ PTLS+INL+IPVG+LVAIVGGTGEGKTSL+
Sbjct: 601 ILAQNPPLQPGTPAISIKNGYFSWDSKTTKPTLSDINLEIPVGTLVAIVGGTGEGKTSLI 660
Query: 685 SAMLGELPPLKDASVVIRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQ 744
SAMLGEL + SVVIRG+VAYVPQ+SWIFNAT+R+NILFGS+F+ +YW+ +D +ALQ
Sbjct: 661 SAMLGELSHAETTSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDATALQ 720
Query: 745 HDLDLLPDRDLTEIGERGVNISGGQKQRVSMARA------------------------VF 780
HDLDLLP RDLTEIGERGVNISGGQKQRVSMARA VF
Sbjct: 721 HDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVAHQVF 780
Query: 781 NSCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLMENA 840
+SC+K+ELRGKTR+LVTNQLHFLP +D+IILVSEGMIKEEG+F ELSK G LF+KLMENA
Sbjct: 781 DSCMKDELRGKTRVLVTNQLHFLPLMDKIILVSEGMIKEEGTFVELSKSGILFKKLMENA 840
Query: 841 GKMEEMEEREEKDDSINSNQE-VSKPVANRAVQVNEFPKNESYTKKGKRGRSVLVKQEER 899
GKM+ +E +N+N E + K V V+E +N TK+GKR RSVL+KQEER
Sbjct: 841 GKMDATQE-------VNTNDENILKLGPTVTVDVSE--RNLGSTKQGKRRRSVLIKQEER 891
Query: 900 ETGIVSGSVLTRYKNALGGPWVIMILFACYLSTEVLRISSSTWLSFWTDQSTSKNYNPGF 959
ETGI+S +VL RYK A+GG WV+MIL ACYL+TEVLR+SSSTWLS WTDQSTSKNY+PGF
Sbjct: 892 ETGIISWNVLMRYKEAVGGLWVVMILLACYLATEVLRVSSSTWLSIWTDQSTSKNYSPGF 951
Query: 960 YIAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILRAPMLFFHTNPIGRVIN 1019
YI +Y +L FGQV VT NS+WLI SSL AA+RLHD+ML+SILRAPMLFFHTNP GRVIN
Sbjct: 952 YIVVYALLGFGQVAVTFTNSFWLITSSLHAARRLHDAMLSSILRAPMLFFHTNPTGRVIN 1011
Query: 1020 RFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLILFYAAYLYYQ 1079
RFS+D+GDIDRNVA+ +NMFMNQLWQLLSTF LIG VSTISLWAIMPLLILFYAAYLYYQ
Sbjct: 1012 RFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTISLWAIMPLLILFYAAYLYYQ 1071
Query: 1080 STAREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTS 1139
ST+REV+RLDS+TRSP+YAQFGEALNGLS+IRA+KAYDRMAKINGKSMDNNIRFTLANTS
Sbjct: 1072 STSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTS 1131
Query: 1140 SNRWLTIRLETLGGIMIWLIATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLR 1199
SNRWLTIRLETLGG+MIWL ATFAV+QNG NQ FASTMGLLLSYTLNIT+LLSGVLR
Sbjct: 1132 SNRWLTIRLETLGGVMIWLTATFAVLQNGNTNNQAGFASTMGLLLSYTLNITSLLSGVLR 1191
Query: 1200 QASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSGSIKFEDVVLRYRPELPPV 1259
QASRAENSLN+VERVG YIDLPSEA ++E+NRP WPS GSIKFEDV LRYRP LPPV
Sbjct: 1192 QASRAENSLNSVERVGNYIDLPSEATDIIENNRPVCGWPSGGSIKFEDVHLRYRPGLPPV 1251
Query: 1260 LHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERG 1299
LHGL+F VSPSEKVG+VGRTGAGKSSMLNALFRIVE+E+G
Sbjct: 1252 LHGLTFFVSPSEKVGVVGRTGAGKSSMLNALFRIVEVEKG 1291
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297845974|ref|XP_002890868.1| ATMRP13 [Arabidopsis lyrata subsp. lyrata] gi|297336710|gb|EFH67127.1| ATMRP13 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 2019 bits (5232), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 981/1300 (75%), Positives = 1124/1300 (86%), Gaps = 36/1300 (2%)
Query: 27 MASGPLDWYCRPVANGTWAKTVDSTFGAYTTCAVDSLVISISHSVLLGLCIFRIWLMNKN 86
M L+WYC+P+A G W K+VD FGAYT CA+DSLVI +SH VLL LC +RIW++ N
Sbjct: 1 MGFEALNWYCKPIAEGFWEKSVDGAFGAYTPCAIDSLVILVSHFVLLALCSYRIWIIFHN 60
Query: 87 SKARRYRLSSNCYNYMLGLLACYCTAEPLLRLVMGISIFNLDGETSFAPFEMVSLIIEAL 146
+KA+ Y L YN +LG+LACYC EP+LRLVMGIS+F++D +T PFE+ SL++EA
Sbjct: 61 TKAQIYVLRKKYYNCVLGILACYCVVEPVLRLVMGISLFDMDEDTDLPPFEVSSLMVEAF 120
Query: 147 AWCSMLIMICLETKFYIREFRWYVRFGVIYVLVGDAVILNLIIPMRDYYSRITLYLYISM 206
+W SML++I LETK Y++EFRWYVRFGV+YVLV DAV+L+L++P ++ +R LYL+IS
Sbjct: 121 SWFSMLVLIGLETKQYVKEFRWYVRFGVLYVLVADAVLLDLVLPFKNSINRTALYLFISS 180
Query: 207 VFCQALFGILILVYIPNLDPYPGYTIMQPEFVDNAEYEALPGGEHVCPERNASILSRTSF 266
QALFGIL+L+YIP LDPYPGY I+ E +N EY+AL GGEH+CPER+ASI SR F
Sbjct: 181 RCSQALFGILLLIYIPELDPYPGYHIVNDEPSENVEYDALRGGEHICPERHASIFSRIYF 240
Query: 267 GWMTPLLQLGYKKPITEKDVWKLDTWDQTEILIEKFHRCWIEESQRSKPWLLRALNNSFG 326
GW+TPL+QLGY+KPITEKDVW+LD WDQTE L ++F RCW EES+R KPWLLRALNNS G
Sbjct: 241 GWITPLMQLGYRKPITEKDVWQLDKWDQTETLFKRFQRCWTEESRRPKPWLLRALNNSLG 300
Query: 327 GRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPAWIGYIYAFLIFVGVSFGVLTEAQ 386
GRFWLGG+FKIGNDLSQFVGPV+L+HLL+SMQ GDPAW+GY+YAF+IFVGV+ GVL EAQ
Sbjct: 301 GRFWLGGIFKIGNDLSQFVGPVILSHLLRSMQEGDPAWVGYVYAFIIFVGVTLGVLCEAQ 360
Query: 387 YFQNVWRVGFRLRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQLHG 446
YFQNVWRVGFRLRSTLVAAIF K+LRLTHEARK F SGKVTNMITTDANALQQISQQLHG
Sbjct: 361 YFQNVWRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQISQQLHG 420
Query: 447 LWSAPFRITLSMVLLYQQLGVASLLGSLMLVLMVPLQTFIISKMRKLTKEGLQWTDRRVS 506
LWSAPFRI +SM+LLYQQLGVASL GSL+L L++PLQT IISKMRKLTKEGLQWTD+RV
Sbjct: 421 LWSAPFRIIVSMILLYQQLGVASLFGSLILFLLIPLQTLIISKMRKLTKEGLQWTDKRVG 480
Query: 507 LTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSIPVVVTVV 566
+TNEIL++MDTVKCYAWEKSF+SR+Q IR++ELSWFRKAQ LSAFNSFILNSIPVVVTVV
Sbjct: 481 ITNEILSSMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIPVVVTVV 540
Query: 567 SFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEER 626
SFG F LLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQR+EELLL+EER
Sbjct: 541 SFGVFVLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRIEELLLSEER 600
Query: 627 ILMPNPPLEPELPAVSIKNGNFSWDSKS--PTLSNINLDIPVGSLVAIVGGTGEGKTSLV 684
IL NPPL+P PA+SIKNG FSWDSK+ PTLS+INL+IPVGSLVAIVGGTGEGKTSL+
Sbjct: 601 ILAQNPPLQPGTPAISIKNGYFSWDSKTTKPTLSDINLEIPVGSLVAIVGGTGEGKTSLI 660
Query: 685 SAMLGELPPLKDASVVIRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQ 744
SA+LGEL + ++VVIRG+VAYVPQ+SWIFNAT+R+NILFGS+F+ +YW+ +D +ALQ
Sbjct: 661 SAILGELSHAETSTVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDATALQ 720
Query: 745 HDLDLLPDRDLTEIGERGVNISGGQKQRVSMARA------------------------VF 780
HDLDLLP RDLTEIGERGVNISGGQKQRVSMARA VF
Sbjct: 721 HDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVAHQVF 780
Query: 781 NSCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLMENA 840
+SC+K+ELRGKTR+LVTNQLHFLP +DRIILVSEGMIKEEG+F ELSK G LF+KLMENA
Sbjct: 781 DSCMKDELRGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFTELSKSGSLFKKLMENA 840
Query: 841 GKMEEMEEREEKDDSINSN-QEVSKPVANRAVQVNEFPKNESYTKKGKRGRSVLVKQEER 899
GKM+ +E +N+N +++ KP + V+E +N TK+GKR RSVLVKQEER
Sbjct: 841 GKMDATQE-------VNTNDKDILKPGPTVTIDVSE--RNLGSTKQGKRRRSVLVKQEER 891
Query: 900 ETGIVSGSVLTRYKNALGGPWVIMILFACYLSTEVLRISSSTWLSFWTDQSTSKNYNPGF 959
ETGI+S +VL RYK A+GG WV+MIL ACYL+TEVLR+SSSTWLS WTDQSTSK+Y+PGF
Sbjct: 892 ETGIISWNVLMRYKEAVGGLWVVMILLACYLTTEVLRVSSSTWLSIWTDQSTSKSYSPGF 951
Query: 960 YIAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILRAPMLFFHTNPIGRVIN 1019
YI +Y +L FGQV VT NS+WLI SSL AAKRLHD ML+SILRAPMLFFHTNP GRVIN
Sbjct: 952 YIVVYALLGFGQVAVTFTNSFWLITSSLNAAKRLHDGMLSSILRAPMLFFHTNPTGRVIN 1011
Query: 1020 RFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLILFYAAYLYYQ 1079
RFS+D+GDIDRNVA+ +NMFMNQLWQLLSTF LIG VSTISLWAIMPLLILFYAAYLYYQ
Sbjct: 1012 RFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTISLWAIMPLLILFYAAYLYYQ 1071
Query: 1080 STAREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTS 1139
ST+REV+RLDS+TRSP+YAQFGEALNGLS+IRA+KAYDRMAKINGKSMDNNIRFTLANTS
Sbjct: 1072 STSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTS 1131
Query: 1140 SNRWLTIRLETLGGIMIWLIATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLR 1199
SNRWLTIRLETLGG+MIWL ATFAV+QNG AENQ AFASTMGLLLSYTLNIT+LLSGVLR
Sbjct: 1132 SNRWLTIRLETLGGVMIWLTATFAVLQNGNAENQAAFASTMGLLLSYTLNITSLLSGVLR 1191
Query: 1200 QASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSGSIKFEDVVLRYRPELPPV 1259
QASRAENSLN+VERVG YIDLPSEA ++E+NRP WPS GSIKFEDV LRYRP LPPV
Sbjct: 1192 QASRAENSLNSVERVGNYIDLPSEATDIIENNRPVAGWPSRGSIKFEDVHLRYRPGLPPV 1251
Query: 1260 LHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERG 1299
LHGL+F VSPSEKVG+VGRTGAGKSSMLNALFRIVELE+G
Sbjct: 1252 LHGLTFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKG 1291
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225443996|ref|XP_002280819.1| PREDICTED: ABC transporter C family member 2 isoform 1 [Vitis vinifera] gi|297740795|emb|CBI30977.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2002 bits (5187), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 977/1299 (75%), Positives = 1108/1299 (85%), Gaps = 30/1299 (2%)
Query: 27 MASGPLDWYCRPVANGTWAKTVDSTFGAYTTCAVDSLVISISHSVLLGLCIFRIWLMNKN 86
MA GPL WYCRPV NG WAK VD+ FG YT CA D+LVISISH +LL LC +RIW + K+
Sbjct: 1 MAFGPLVWYCRPVTNGVWAKLVDNAFGVYTPCATDTLVISISHFILLSLCFYRIWRIKKD 60
Query: 87 SKARRYRLSSNCYNYMLGLLACYCTAEPLLRLVMGISIFNLDGETSFAPFEMVSLIIEAL 146
K +R+ L SN YNYML LLA YCTAEPL RL+MGIS+FNLDG+ APFE+VSLII+A
Sbjct: 61 FKVQRFCLRSNYYNYMLALLAGYCTAEPLFRLIMGISVFNLDGQAGLAPFEVVSLIIKAF 120
Query: 147 AWCSMLIMICLETKFYIREFRWYVRFGVIYVLVGDAVILNLIIPMRDYYSRITLYLYISM 206
WCSML++I +ETK YIREFRWY+RFGV+Y L+G+AV+LNLI+ +++ Y R LYLYIS
Sbjct: 121 TWCSMLVLIGIETKVYIREFRWYLRFGVLYTLIGEAVMLNLILSVKELYDRSILYLYISE 180
Query: 207 VFCQALFGILILVYIPNLDPYPGYTIMQPEFVDNAEYEALPGGEHVCPERNASILSRTSF 266
V Q LFGIL+L Y+P+LDPYPGYT M VD+AEYE +PGGE +CPER+ +I SR +F
Sbjct: 181 VVLQVLFGILLLFYVPDLDPYPGYTPMWTGSVDDAEYEEIPGGEQICPERHVNIFSRITF 240
Query: 267 GWMTPLLQLGYKKPITEKDVWKLDTWDQTEILIEKFHRCWIEESQRSKPWLLRALNNSFG 326
GWM P++QLG K+PITEKDVWKLD+WDQTE L F RCW EE+ R KPWLLRALN S G
Sbjct: 241 GWMNPIMQLGSKRPITEKDVWKLDSWDQTETLNNNFQRCWAEEALRPKPWLLRALNRSLG 300
Query: 327 GRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPAWIGYIYAFLIFVGVSFGVLTEAQ 386
GRFW GG +KIGNDLSQFVGP++LN LLQSMQ+GDPAWIGYIYAF IFVGV FGVL EAQ
Sbjct: 301 GRFWWGGFWKIGNDLSQFVGPLILNQLLQSMQQGDPAWIGYIYAFSIFVGVVFGVLFEAQ 360
Query: 387 YFQNVWRVGFRLRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQLHG 446
YFQNV RVGFR+RSTLVAA+FRK+L+LTHE R+ F SGK+TN++TTDA ALQQI Q LH
Sbjct: 361 YFQNVMRVGFRVRSTLVAAVFRKSLKLTHEGRRQFASGKITNLMTTDAEALQQICQSLHT 420
Query: 447 LWSAPFRITLSMVLLYQQLGVASLLGSLMLVLMVPLQTFIISKMRKLTKEGLQWTDRRVS 506
LWSAPFRI ++MVLLYQQLGVASLLG+LMLVL+ P+QT +IS+M+KL+KEGLQ TD+R+
Sbjct: 421 LWSAPFRIIIAMVLLYQQLGVASLLGALMLVLLFPIQTVVISRMQKLSKEGLQRTDKRIG 480
Query: 507 LTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSIPVVVTVV 566
L NEILAAMDTVKCYAWE SFQS+VQS+R++ELSWFRKA FL AFN F+LNSIPVVV V+
Sbjct: 481 LMNEILAAMDTVKCYAWENSFQSKVQSVRNEELSWFRKASFLGAFNVFMLNSIPVVVIVI 540
Query: 567 SFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEER 626
SFG FTLLGGDLTPARAFTSLSLFAVLRFPL MLPN+++Q VNANVSL+RLEEL LAEER
Sbjct: 541 SFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNIITQAVNANVSLKRLEELFLAEER 600
Query: 627 ILMPNPPLEPELPAVSIKNGNFSWDSKS--PTLSNINLDIPVGSLVAIVGGTGEGKTSLV 684
IL+PNPPLEP LPA+SIKNG FSWDSK+ PTLSN+NLDIPVG LVAIVGGTGEGKTSLV
Sbjct: 601 ILLPNPPLEPGLPAISIKNGYFSWDSKADRPTLSNVNLDIPVGGLVAIVGGTGEGKTSLV 660
Query: 685 SAMLGELPPLKDASVVIRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQ 744
SAMLGELPP+ DAS VIRGTVAYVPQ+SWIFNAT+R NILFGS F+ A+Y K +DV+ALQ
Sbjct: 661 SAMLGELPPMSDASAVIRGTVAYVPQVSWIFNATVRGNILFGSPFEAARYEKAIDVTALQ 720
Query: 745 HDLDLLPDRDLTEIGERGVNISGGQKQRVSMARA------------------------VF 780
HDLDLLP DLTEIGERGVNISGGQKQRVSMARA VF
Sbjct: 721 HDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVF 780
Query: 781 NSCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLMENA 840
+ CIK ELRGKTR+LVTNQLHFL VDRIILV EGM+KEEG+FEELS +G +FQKLMENA
Sbjct: 781 DRCIKGELRGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEELSNNGMMFQKLMENA 840
Query: 841 GKMEEMEEREEKDDSINSNQEVSKPVANRAVQVNEFPKNESYTKKGKRGRSVLVKQEERE 900
GKMEE E +++I + + SKPVAN V++ P N S T K K G+SVL+KQEERE
Sbjct: 841 GKMEEYVEENGAEENI--DDKTSKPVANGV--VDKLPNNSSNTSKPKEGKSVLIKQEERE 896
Query: 901 TGIVSGSVLTRYKNALGGPWVIMILFACYLSTEVLRISSSTWLSFWTDQSTSKNYNPGFY 960
TG+VS VL RYKNALGG WV+MILF CY+ TE LR+SSSTWLS WTDQ S+ + PG+Y
Sbjct: 897 TGVVSWKVLVRYKNALGGLWVVMILFMCYILTETLRVSSSTWLSQWTDQGGSRTHGPGYY 956
Query: 961 IAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILRAPMLFFHTNPIGRVINR 1020
IY +L+FGQV VTL NSYWLI+SSL AAKRLHD+ML SILRAPMLFFHTNPIGR+INR
Sbjct: 957 NLIYAMLSFGQVLVTLANSYWLIMSSLYAAKRLHDAMLGSILRAPMLFFHTNPIGRIINR 1016
Query: 1021 FSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLILFYAAYLYYQS 1080
F++DLGDIDRNVA FVNMF+ Q+ QLLSTFVLIGIVST+SLWAIMPLL+LFY+AYLYYQ+
Sbjct: 1017 FAKDLGDIDRNVAVFVNMFLGQISQLLSTFVLIGIVSTMSLWAIMPLLVLFYSAYLYYQN 1076
Query: 1081 TAREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSS 1140
TAREVKRLDSITRSPVYAQFGEALNGLSTIRA+KAYDRMA ING+SMDNNIR+TL N SS
Sbjct: 1077 TAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGQSMDNNIRYTLVNMSS 1136
Query: 1141 NRWLTIRLETLGGIMIWLIATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQ 1200
NRWL IRLE LGG+MIWL ATFAVMQN RAENQ AFASTMGLLLSY LNIT+LL+GVLR
Sbjct: 1137 NRWLAIRLEALGGLMIWLTATFAVMQNERAENQQAFASTMGLLLSYALNITSLLTGVLRL 1196
Query: 1201 ASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSGSIKFEDVVLRYRPELPPVL 1260
AS AENSLN+VERVG+YI+LPSEAP ++ESNRPPPAWPSSGSIKFEDVVLRYRPELPPVL
Sbjct: 1197 ASLAENSLNSVERVGSYIELPSEAPLVIESNRPPPAWPSSGSIKFEDVVLRYRPELPPVL 1256
Query: 1261 HGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERG 1299
HGLSFT+SPS+KVGIVGRTGAGKSSMLNALFRIVELERG
Sbjct: 1257 HGLSFTISPSDKVGIVGRTGAGKSSMLNALFRIVELERG 1295
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359483925|ref|XP_003633036.1| PREDICTED: ABC transporter C family member 2 isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1988 bits (5150), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 972/1299 (74%), Positives = 1101/1299 (84%), Gaps = 37/1299 (2%)
Query: 27 MASGPLDWYCRPVANGTWAKTVDSTFGAYTTCAVDSLVISISHSVLLGLCIFRIWLMNKN 86
MA GPL WYCRPV NG WAK VD+ FG YT CA D+LVISISH +LL LC +RIW + K+
Sbjct: 1 MAFGPLVWYCRPVTNGVWAKLVDNAFGVYTPCATDTLVISISHFILLSLCFYRIWRIKKD 60
Query: 87 SKARRYRLSSNCYNYMLGLLACYCTAEPLLRLVMGISIFNLDGETSFAPFEMVSLIIEAL 146
K +R+ L SN YNYML LLA YCTAEPL RL+MGIS+FNLDG+ APFE A
Sbjct: 61 FKVQRFCLRSNYYNYMLALLAGYCTAEPLFRLIMGISVFNLDGQAGLAPFE-------AF 113
Query: 147 AWCSMLIMICLETKFYIREFRWYVRFGVIYVLVGDAVILNLIIPMRDYYSRITLYLYISM 206
WCSML++I +ETK YIREFRWY+RFGV+Y L+G+AV+LNLI+ +++ Y R LYLYIS
Sbjct: 114 TWCSMLVLIGIETKVYIREFRWYLRFGVLYTLIGEAVMLNLILSVKELYDRSILYLYISE 173
Query: 207 VFCQALFGILILVYIPNLDPYPGYTIMQPEFVDNAEYEALPGGEHVCPERNASILSRTSF 266
V Q LFGIL+L Y+P+LDPYPGYT M VD+AEYE +PGGE +CPER+ +I SR +F
Sbjct: 174 VVLQVLFGILLLFYVPDLDPYPGYTPMWTGSVDDAEYEEIPGGEQICPERHVNIFSRITF 233
Query: 267 GWMTPLLQLGYKKPITEKDVWKLDTWDQTEILIEKFHRCWIEESQRSKPWLLRALNNSFG 326
GWM P++QLG K+PITEKDVWKLD+WDQTE L F RCW EE+ R KPWLLRALN S G
Sbjct: 234 GWMNPIMQLGSKRPITEKDVWKLDSWDQTETLNNNFQRCWAEEALRPKPWLLRALNRSLG 293
Query: 327 GRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPAWIGYIYAFLIFVGVSFGVLTEAQ 386
GRFW GG +KIGNDLSQFVGP++LN LLQSMQ+GDPAWIGYIYAF IFVGV FGVL EAQ
Sbjct: 294 GRFWWGGFWKIGNDLSQFVGPLILNQLLQSMQQGDPAWIGYIYAFSIFVGVVFGVLFEAQ 353
Query: 387 YFQNVWRVGFRLRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQLHG 446
YFQNV RVGFR+RSTLVAA+FRK+L+LTHE R+ F SGK+TN++TTDA ALQQI Q LH
Sbjct: 354 YFQNVMRVGFRVRSTLVAAVFRKSLKLTHEGRRQFASGKITNLMTTDAEALQQICQSLHT 413
Query: 447 LWSAPFRITLSMVLLYQQLGVASLLGSLMLVLMVPLQTFIISKMRKLTKEGLQWTDRRVS 506
LWSAPFRI ++MVLLYQQLGVASLLG+LMLVL+ P+QT +IS+M+KL+KEGLQ TD+R+
Sbjct: 414 LWSAPFRIIIAMVLLYQQLGVASLLGALMLVLLFPIQTVVISRMQKLSKEGLQRTDKRIG 473
Query: 507 LTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSIPVVVTVV 566
L NEILAAMDTVKCYAWE SFQS+VQS+R++ELSWFRKA FL AFN F+LNSIPVVV V+
Sbjct: 474 LMNEILAAMDTVKCYAWENSFQSKVQSVRNEELSWFRKASFLGAFNVFMLNSIPVVVIVI 533
Query: 567 SFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEER 626
SFG FTLLGGDLTPARAFTSLSLFAVLRFPL MLPN+++Q VNANVSL+RLEEL LAEER
Sbjct: 534 SFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNIITQAVNANVSLKRLEELFLAEER 593
Query: 627 ILMPNPPLEPELPAVSIKNGNFSWDSKS--PTLSNINLDIPVGSLVAIVGGTGEGKTSLV 684
IL+PNPPLEP LPA+SIKNG FSWDSK+ PTLSN+NLDIPVG LVAIVGGTGEGKTSLV
Sbjct: 594 ILLPNPPLEPGLPAISIKNGYFSWDSKADRPTLSNVNLDIPVGGLVAIVGGTGEGKTSLV 653
Query: 685 SAMLGELPPLKDASVVIRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQ 744
SAMLGELPP+ DAS VIRGTVAYVPQ+SWIFNAT+R NILFGS F+ A+Y K +DV+ALQ
Sbjct: 654 SAMLGELPPMSDASAVIRGTVAYVPQVSWIFNATVRGNILFGSPFEAARYEKAIDVTALQ 713
Query: 745 HDLDLLPDRDLTEIGERGVNISGGQKQRVSMARA------------------------VF 780
HDLDLLP DLTEIGERGVNISGGQKQRVSMARA VF
Sbjct: 714 HDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVF 773
Query: 781 NSCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLMENA 840
+ CIK ELRGKTR+LVTNQLHFL VDRIILV EGM+KEEG+FEELS +G +FQKLMENA
Sbjct: 774 DRCIKGELRGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEELSNNGMMFQKLMENA 833
Query: 841 GKMEEMEEREEKDDSINSNQEVSKPVANRAVQVNEFPKNESYTKKGKRGRSVLVKQEERE 900
GKMEE E +++I + + SKPVAN V++ P N S T K K G+SVL+KQEERE
Sbjct: 834 GKMEEYVEENGAEENI--DDKTSKPVANGV--VDKLPNNSSNTSKPKEGKSVLIKQEERE 889
Query: 901 TGIVSGSVLTRYKNALGGPWVIMILFACYLSTEVLRISSSTWLSFWTDQSTSKNYNPGFY 960
TG+VS VL RYKNALGG WV+MILF CY+ TE LR+SSSTWLS WTDQ S+ + PG+Y
Sbjct: 890 TGVVSWKVLVRYKNALGGLWVVMILFMCYILTETLRVSSSTWLSQWTDQGGSRTHGPGYY 949
Query: 961 IAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILRAPMLFFHTNPIGRVINR 1020
IY +L+FGQV VTL NSYWLI+SSL AAKRLHD+ML SILRAPMLFFHTNPIGR+INR
Sbjct: 950 NLIYAMLSFGQVLVTLANSYWLIMSSLYAAKRLHDAMLGSILRAPMLFFHTNPIGRIINR 1009
Query: 1021 FSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLILFYAAYLYYQS 1080
F++DLGDIDRNVA FVNMF+ Q+ QLLSTFVLIGIVST+SLWAIMPLL+LFY+AYLYYQ+
Sbjct: 1010 FAKDLGDIDRNVAVFVNMFLGQISQLLSTFVLIGIVSTMSLWAIMPLLVLFYSAYLYYQN 1069
Query: 1081 TAREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSS 1140
TAREVKRLDSITRSPVYAQFGEALNGLSTIRA+KAYDRMA ING+SMDNNIR+TL N SS
Sbjct: 1070 TAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGQSMDNNIRYTLVNMSS 1129
Query: 1141 NRWLTIRLETLGGIMIWLIATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQ 1200
NRWL IRLE LGG+MIWL ATFAVMQN RAENQ AFASTMGLLLSY LNIT+LL+GVLR
Sbjct: 1130 NRWLAIRLEALGGLMIWLTATFAVMQNERAENQQAFASTMGLLLSYALNITSLLTGVLRL 1189
Query: 1201 ASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSGSIKFEDVVLRYRPELPPVL 1260
AS AENSLN+VERVG+YI+LPSEAP ++ESNRPPPAWPSSGSIKFEDVVLRYRPELPPVL
Sbjct: 1190 ASLAENSLNSVERVGSYIELPSEAPLVIESNRPPPAWPSSGSIKFEDVVLRYRPELPPVL 1249
Query: 1261 HGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERG 1299
HGLSFT+SPS+KVGIVGRTGAGKSSMLNALFRIVELERG
Sbjct: 1250 HGLSFTISPSDKVGIVGRTGAGKSSMLNALFRIVELERG 1288
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356555514|ref|XP_003546076.1| PREDICTED: ABC transporter C family member 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1982 bits (5134), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 957/1299 (73%), Positives = 1109/1299 (85%), Gaps = 31/1299 (2%)
Query: 27 MASGPLDWYCRPVANGTWAKTVDSTFGAYTTCAVDSLVISISHSVLLGLCIFRIWLMNKN 86
MA PL+WYCRPVANG W K+V++ FGAYT CAVDSLVIS+S+ +LLGLCI+RIWL+ K+
Sbjct: 1 MAFEPLNWYCRPVANGVWTKSVENAFGAYTPCAVDSLVISVSNLILLGLCIYRIWLIMKD 60
Query: 87 SKARRYRLSSNCYNYMLGLLACYCTAEPLLRLVMGISIFNLDGETSFAPFEMVSLIIEAL 146
+R+ L SN YNY+LGLLA YC AEPL RL+MGIS+ NLDG+T APFE++SLIIEAL
Sbjct: 61 FTVKRFCLRSNLYNYILGLLALYCVAEPLYRLIMGISVLNLDGQTQLAPFEIISLIIEAL 120
Query: 147 AWCSMLIMICLETKFYIREFRWYVRFGVIYVLVGDAVILNLIIPMRDYYSRITLYLYISM 206
AWCS+LI+I +ETK YIREFRW+VRFG+IY +VGDAV+ NLII +++YS LY YIS
Sbjct: 121 AWCSILILIGIETKVYIREFRWFVRFGLIYAIVGDAVMFNLIISAKEFYSSSVLYFYISE 180
Query: 207 VFCQALFGILILVYIPNLDPYPGYTIMQPEFVDNAEYEALPGGEHVCPERNASILSRTSF 266
V Q LFGIL+LVY+P LDPYPGYT + E + +A Y+ LPGG+ +CPER+A+ILSR F
Sbjct: 181 VVGQVLFGILLLVYVPTLDPYPGYTPIGTEMITDATYDELPGGDMICPERSANILSRIMF 240
Query: 267 GWMTPLLQLGYKKPITEKDVWKLDTWDQTEILIEKFHRCWIEESQRSKPWLLRALNNSFG 326
WM P+++LGY++P+TEKD+WKLDTW++TE LI KF +CW+EES++SKPWLLRALN S G
Sbjct: 241 SWMNPIMKLGYERPLTEKDIWKLDTWERTETLINKFQKCWVEESRKSKPWLLRALNASLG 300
Query: 327 GRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPAWIGYIYAFLIFVGVSFGVLTEAQ 386
GRFW GG KIGND+SQF+GP++LN LLQSMQ G+P+W GY+YAF IFVGV FGVL EAQ
Sbjct: 301 GRFWWGGFCKIGNDISQFMGPLILNQLLQSMQNGEPSWTGYVYAFSIFVGVVFGVLCEAQ 360
Query: 387 YFQNVWRVGFRLRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQLHG 446
YFQNV RVG+RLRSTLVAA+FRK+LRLTHEARK F +GK+TN++TTDA ALQQI Q LH
Sbjct: 361 YFQNVMRVGYRLRSTLVAAVFRKSLRLTHEARKQFATGKITNLMTTDAEALQQICQSLHT 420
Query: 447 LWSAPFRITLSMVLLYQQLGVASLLGSLMLVLMVPLQTFIISKMRKLTKEGLQWTDRRVS 506
LWSAP RI ++MVLLYQQLGVASLLG+LMLVLM PLQTFIIS+M+KL+KEGLQ TD+R+
Sbjct: 421 LWSAPVRIVVAMVLLYQQLGVASLLGALMLVLMFPLQTFIISRMQKLSKEGLQRTDKRIG 480
Query: 507 LTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSIPVVVTVV 566
L NEILAAMDT+K YAWE SFQS+VQ +RDDELSWFRKA L A N FILNSIPV VTV+
Sbjct: 481 LMNEILAAMDTLKYYAWESSFQSKVQIVRDDELSWFRKASLLGACNGFILNSIPVFVTVI 540
Query: 567 SFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEER 626
+FG FTLLGGDLTPARAFTSLSLF+VLRFPL MLPN ++QVVNANVSL+RLE+LLLAEER
Sbjct: 541 TFGVFTLLGGDLTPARAFTSLSLFSVLRFPLFMLPNTITQVVNANVSLKRLEDLLLAEER 600
Query: 627 ILMPNPPLEPELPAVSIKNGNFSWDSKS--PTLSNINLDIPVGSLVAIVGGTGEGKTSLV 684
+L+PNPP+EP LPA+SIKNG FSWD+K+ +LSNINLDIPVG LVA+VG TGEGKTSLV
Sbjct: 601 VLLPNPPIEPGLPAISIKNGYFSWDAKAERASLSNINLDIPVGCLVAVVGSTGEGKTSLV 660
Query: 685 SAMLGELPPLKDASVVIRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQ 744
SAMLGELPP+ D+SVV+RGTVAYVPQ+SWIFNAT+R NILFGS FDPA+Y + ++V+ LQ
Sbjct: 661 SAMLGELPPMADSSVVLRGTVAYVPQVSWIFNATVRDNILFGSVFDPARYQRAINVTELQ 720
Query: 745 HDLDLLPDRDLTEIGERGVNISGGQKQRVSMARA------------------------VF 780
HDL+LLP DLTEIGERGVNISGGQKQRVSMARA VF
Sbjct: 721 HDLELLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVARQVF 780
Query: 781 NSCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLMENA 840
+ CIK +LRGKTR+LVTNQLHFL V+RIILV EGM+KEEG+FEELS HG LFQKLMENA
Sbjct: 781 DKCIKGDLRGKTRVLVTNQLHFLSQVNRIILVHEGMVKEEGTFEELSNHGPLFQKLMENA 840
Query: 841 GKMEEMEEREEKDDSINSNQEVSKPVANRAVQVNEFPKNESYTKKGKRGRSVLVKQEERE 900
GKMEE EE E+ D + SKPVAN A +N+ K+ S K K G+SVL+KQEER
Sbjct: 841 GKMEEYEEEEKVDTETTDQKPSSKPVANGA--INDHAKSGS---KPKEGKSVLIKQEERA 895
Query: 901 TGIVSGSVLTRYKNALGGPWVIMILFACYLSTEVLRISSSTWLSFWTDQSTSKNYNPGFY 960
TG+VS +VLTRYK+ALGG WV+ +LFACY+STE LRISSSTWLS WTDQS ++ YNP FY
Sbjct: 896 TGVVSLNVLTRYKSALGGFWVVFVLFACYVSTETLRISSSTWLSHWTDQSATEGYNPVFY 955
Query: 961 IAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILRAPMLFFHTNPIGRVINR 1020
IY L+FGQV VTL NSYWLIISSL AA+RLH++ML+SILRAPM+FF TNP+GRVINR
Sbjct: 956 NMIYAALSFGQVLVTLTNSYWLIISSLYAARRLHEAMLSSILRAPMVFFQTNPLGRVINR 1015
Query: 1021 FSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLILFYAAYLYYQS 1080
F++DLGDIDRNVA FVNMF+ Q+ QLLSTF+LIGIVST+SLWAI+PLL+LFY AYLYYQS
Sbjct: 1016 FAKDLGDIDRNVAPFVNMFLGQVSQLLSTFILIGIVSTMSLWAILPLLVLFYVAYLYYQS 1075
Query: 1081 TAREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSS 1140
TAREVKRLDSI+RSPVYAQFGEALNGLSTIRA+KAYDRMA INGKSMDNNIRFTL N S
Sbjct: 1076 TAREVKRLDSISRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDNNIRFTLVNMSG 1135
Query: 1141 NRWLTIRLETLGGIMIWLIATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQ 1200
NRWL IRLETLGG+MIWL ATFAVMQNGRAENQ FASTMGLLLSY LNIT+LL+GVLR
Sbjct: 1136 NRWLAIRLETLGGLMIWLTATFAVMQNGRAENQQEFASTMGLLLSYALNITSLLTGVLRL 1195
Query: 1201 ASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSGSIKFEDVVLRYRPELPPVL 1260
AS AENSLNAVER+GTYIDLPSEAP ++++NRPPP WPS GSI+FEDVVLRYRPELPPVL
Sbjct: 1196 ASLAENSLNAVERIGTYIDLPSEAPSVIDNNRPPPGWPSLGSIRFEDVVLRYRPELPPVL 1255
Query: 1261 HGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERG 1299
HGLSFT+ PS+KVGIVGRTGAGKSSMLNALFRIVELE+G
Sbjct: 1256 HGLSFTIFPSDKVGIVGRTGAGKSSMLNALFRIVELEQG 1294
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356549118|ref|XP_003542944.1| PREDICTED: ABC transporter C family member 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1977 bits (5123), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 956/1299 (73%), Positives = 1103/1299 (84%), Gaps = 31/1299 (2%)
Query: 27 MASGPLDWYCRPVANGTWAKTVDSTFGAYTTCAVDSLVISISHSVLLGLCIFRIWLMNKN 86
M PLDWYCRPVANG W ++V++ FGAYT CAVDSLVIS+S+ +LLGLCI+RIWL+ K+
Sbjct: 1 MTFEPLDWYCRPVANGVWTRSVENAFGAYTPCAVDSLVISVSNLILLGLCIYRIWLIKKD 60
Query: 87 SKARRYRLSSNCYNYMLGLLACYCTAEPLLRLVMGISIFNLDGETSFAPFEMVSLIIEAL 146
+R+ L SN YNY+LGLLA YC AEPL RL++GIS+ NLDG+T FAPFE+VSLIIEAL
Sbjct: 61 FTVKRFHLRSNLYNYILGLLALYCVAEPLYRLILGISVLNLDGQTQFAPFEIVSLIIEAL 120
Query: 147 AWCSMLIMICLETKFYIREFRWYVRFGVIYVLVGDAVILNLIIPMRDYYSRITLYLYISM 206
AWCS+LI+I +ETK YIREFRW+VRFG+IY +VGDAV+ NLII +++ YS LYLYIS
Sbjct: 121 AWCSILILIGIETKVYIREFRWFVRFGLIYAIVGDAVMFNLIISVKELYSSSVLYLYISE 180
Query: 207 VFCQALFGILILVYIPNLDPYPGYTIMQPEFVDNAEYEALPGGEHVCPERNASILSRTSF 266
V Q LFGIL+LVY+P LDPYPGYT + + + +A Y+ LPGG+ +CPERNA+ILS+ F
Sbjct: 181 VVGQVLFGILLLVYVPTLDPYPGYTPIGSDMITDAAYDELPGGDMICPERNANILSKIMF 240
Query: 267 GWMTPLLQLGYKKPITEKDVWKLDTWDQTEILIEKFHRCWIEESQRSKPWLLRALNNSFG 326
WM P+++LGY++P+TEKD+WKLDTW++TE LI KF +CW+EES++ KPWLLRALN S G
Sbjct: 241 SWMNPIMKLGYQRPLTEKDIWKLDTWERTETLINKFQKCWVEESRKPKPWLLRALNASLG 300
Query: 327 GRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPAWIGYIYAFLIFVGVSFGVLTEAQ 386
GRFW GG KIGND+SQF+GP++LN LLQSMQ GDP+W GY YAF IFVGV FGVL EAQ
Sbjct: 301 GRFWWGGFCKIGNDISQFLGPLILNQLLQSMQNGDPSWTGYAYAFSIFVGVVFGVLCEAQ 360
Query: 387 YFQNVWRVGFRLRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQLHG 446
YFQNV RVG+RLRSTLVAA+FRK+LRLTHEARK F +GK+TN++TTDA ALQQI Q LH
Sbjct: 361 YFQNVMRVGYRLRSTLVAAVFRKSLRLTHEARKQFATGKITNLMTTDAEALQQICQSLHT 420
Query: 447 LWSAPFRITLSMVLLYQQLGVASLLGSLMLVLMVPLQTFIISKMRKLTKEGLQWTDRRVS 506
LWSAPFRI ++MVLLYQQLGVASLLG+LMLVLM PLQTFIIS+M+K +KEGLQ TD+R+
Sbjct: 421 LWSAPFRIVVAMVLLYQQLGVASLLGALMLVLMFPLQTFIISRMQKFSKEGLQRTDKRIG 480
Query: 507 LTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSIPVVVTVV 566
L NEILAAMDTVK YAWE SFQS+VQ +R+DELSWFRKA L A N+FILNSIPV VTV+
Sbjct: 481 LMNEILAAMDTVKYYAWESSFQSKVQIVRNDELSWFRKASLLGACNAFILNSIPVFVTVI 540
Query: 567 SFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEER 626
+FG FTLLGGDLTPARAFTSLSLF+VLRFPL MLPN ++QVVNANVSL+RLE+LLLAEER
Sbjct: 541 TFGVFTLLGGDLTPARAFTSLSLFSVLRFPLFMLPNTITQVVNANVSLKRLEDLLLAEER 600
Query: 627 ILMPNPPLEPELPAVSIKNGNFSWDSKS--PTLSNINLDIPVGSLVAIVGGTGEGKTSLV 684
IL+ NPPLEP LPA+SIKNG FSWD+K+ TLSNINLDIPVG LVA+VG TGEGKTSLV
Sbjct: 601 ILLSNPPLEPGLPAISIKNGYFSWDTKAERATLSNINLDIPVGCLVAVVGSTGEGKTSLV 660
Query: 685 SAMLGELPPLKDASVVIRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQ 744
SAMLGELPP+ D++VV+RGTVAYVPQ+SWIFNAT+R N+LFGS FDP +Y + ++V+ LQ
Sbjct: 661 SAMLGELPPMADSTVVLRGTVAYVPQVSWIFNATVRDNVLFGSVFDPTRYERAINVTELQ 720
Query: 745 HDLDLLPDRDLTEIGERGVNISGGQKQRVSMARA------------------------VF 780
HDL+LLP D TEIGERGVNISGGQKQRVSMARA VF
Sbjct: 721 HDLELLPGGDHTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVARQVF 780
Query: 781 NSCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLMENA 840
+ CIK +LR KTR+LVTNQLHFL VDRIILV EGM+KEEG+FEELS HG LFQKLMENA
Sbjct: 781 DKCIKGDLREKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEELSNHGLLFQKLMENA 840
Query: 841 GKMEEMEEREEKDDSINSNQEVSKPVANRAVQVNEFPKNESYTKKGKRGRSVLVKQEERE 900
GKMEE EE E+ + S+PVAN + VN+ K+ S K K G+SVL+KQEERE
Sbjct: 841 GKMEEYEEEEKVVTETTDQKPSSEPVANGS--VNDHAKSGS---KPKEGKSVLIKQEERE 895
Query: 901 TGIVSGSVLTRYKNALGGPWVIMILFACYLSTEVLRISSSTWLSFWTDQSTSKNYNPGFY 960
TG+VS +VL RYKNALGG WV+ +LFACY+STE LRISSSTWLS WTDQS +K YNP FY
Sbjct: 896 TGVVSWNVLLRYKNALGGFWVVFVLFACYVSTETLRISSSTWLSHWTDQSATKGYNPAFY 955
Query: 961 IAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILRAPMLFFHTNPIGRVINR 1020
IY L+FGQV VTL NSYWLIISSL AA+RLH++ML+SILRAPM+FF TNP+GRVINR
Sbjct: 956 NMIYAALSFGQVLVTLTNSYWLIISSLYAARRLHEAMLSSILRAPMVFFQTNPLGRVINR 1015
Query: 1021 FSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLILFYAAYLYYQS 1080
F++DLGDIDRNVA FVNMF+ Q+ QLLSTF+LIGIVST+SLWAI+PLL+LFY AYLYYQS
Sbjct: 1016 FAKDLGDIDRNVAPFVNMFLGQVSQLLSTFILIGIVSTMSLWAILPLLVLFYVAYLYYQS 1075
Query: 1081 TAREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSS 1140
TAREVKRLDSI+RSPVYAQFGEALNGLSTIRA+KAYDRMA INGKSMDNNIRFTL N S
Sbjct: 1076 TAREVKRLDSISRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDNNIRFTLVNISG 1135
Query: 1141 NRWLTIRLETLGGIMIWLIATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQ 1200
NRWL IRLETLGG+MIWL ATFAVMQNGRAENQ FASTMGLLLSY LNIT+LL+GVLR
Sbjct: 1136 NRWLAIRLETLGGLMIWLTATFAVMQNGRAENQQEFASTMGLLLSYALNITSLLTGVLRL 1195
Query: 1201 ASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSGSIKFEDVVLRYRPELPPVL 1260
AS AENSLNAVER+GTYIDLPSEAP +++ NRPPP WPSSGSI+FEDVVLRYR ELPPVL
Sbjct: 1196 ASLAENSLNAVERIGTYIDLPSEAPSIIDDNRPPPGWPSSGSIRFEDVVLRYRAELPPVL 1255
Query: 1261 HGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERG 1299
HGLSFT+ PS+KVGIVGRTGAGKSSMLNALFRIVELERG
Sbjct: 1256 HGLSFTIFPSDKVGIVGRTGAGKSSMLNALFRIVELERG 1294
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356517706|ref|XP_003527527.1| PREDICTED: ABC transporter C family member 12-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1977 bits (5121), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 946/1302 (72%), Positives = 1102/1302 (84%), Gaps = 31/1302 (2%)
Query: 27 MASGPLDWYCRPVANGTWAKTVDSTFGAYTTCAVDSLVISISHSVLLGLCIFRIWLMNKN 86
M PL+WYCRP N WAK VDS FG+YT CA+++LVISIS+ VL+GLC++RIWL+ N
Sbjct: 1 MGFQPLNWYCRPAENSIWAKAVDSAFGSYTPCAINTLVISISNLVLVGLCLYRIWLITCN 60
Query: 87 SKARRYRLSSNCYNYMLGLLACYCTAEPLLRLVMGISIFNLDGETSFAPFEMVSLIIEAL 146
+KA+R+ LSSNCY+Y++G+LA YC +P+LRL+ G S FNL+GET FAP E+ +LI+EAL
Sbjct: 61 AKAQRFCLSSNCYSYLMGMLAAYCAVQPILRLLTGNSAFNLNGETEFAPVEITTLIVEAL 120
Query: 147 AWCSMLIMICLETKFYIREFRWYVRFGVIYVLVGDAVILNLIIPMRDYYSRITLYLYISM 206
W SM+ +I LETK YIR+FRW VRFGVIYVLVGD V+LNL++P++DY SR L+LYIS
Sbjct: 121 TWSSMITLILLETKVYIRQFRWLVRFGVIYVLVGDIVMLNLLLPVKDYCSRSALFLYISS 180
Query: 207 VFCQALFGILILVYIPNLDPYPGYTIMQPEFVDNAEYEALPGGEHVCPERNASILSRTSF 266
CQ LFG L+ VYIP+L PY G+T MQ E D+ EYE L G + VCPER+A+I SR F
Sbjct: 181 FICQVLFGTLLFVYIPDLVPYSGHTTMQAELPDHGEYEPLCGDDQVCPERHANIFSRICF 240
Query: 267 GWMTPLLQLGYKKPITEKDVWKLDTWDQTEILIEKFHRCWIEESQRSKPWLLRALNNSFG 326
GW+TPL++ GY+KPITEKDVWKLD WD+TE L EKF +CW+ E Q S PWLLRALN+S G
Sbjct: 241 GWITPLMKQGYRKPITEKDVWKLDEWDRTETLTEKFQKCWMLEFQSSNPWLLRALNSSLG 300
Query: 327 GRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPAWIGYIYAFLIFVGVSFGVLTEAQ 386
RFW+GG+FKIGNDLSQFVGP+LLNHLL SMQRGDP+WIGYIYAF IFVGV+ GVL EAQ
Sbjct: 301 KRFWMGGIFKIGNDLSQFVGPILLNHLLDSMQRGDPSWIGYIYAFSIFVGVAVGVLCEAQ 360
Query: 387 YFQNVWRVGFRLRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQLHG 446
YFQNV RVGFRLRSTLVAAIFRK+LRLT++ RK FPSG++ NMIT+DANALQQI QQLHG
Sbjct: 361 YFQNVLRVGFRLRSTLVAAIFRKSLRLTNDGRKNFPSGRLMNMITSDANALQQICQQLHG 420
Query: 447 LWSAPFRITLSMVLLYQQLGVASLLGSLMLVLMVPLQTFIISKMRKLTKEGLQWTDRRVS 506
LWSAPFRIT+++VLLYQQLGVASL+GSLMLVL++PLQTF+ISKMRKLTKEGLQ TD+RV
Sbjct: 421 LWSAPFRITVAIVLLYQQLGVASLIGSLMLVLIIPLQTFVISKMRKLTKEGLQQTDKRVG 480
Query: 507 LTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSIPVVVTVV 566
L NEILAAMDTVKCYAWE SFQSR+ SIRD+ELSWFRKAQ L A NSFILNSIPV+VTV
Sbjct: 481 LMNEILAAMDTVKCYAWETSFQSRILSIRDNELSWFRKAQLLYALNSFILNSIPVLVTVT 540
Query: 567 SFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEER 626
SFG FTLLGG+LTPARAFTSLSLF+VLRFPLNMLPNLLSQV NANVSLQRLEEL LAEER
Sbjct: 541 SFGMFTLLGGELTPARAFTSLSLFSVLRFPLNMLPNLLSQVANANVSLQRLEELFLAEER 600
Query: 627 ILMPNPPLEPELPAVSIKNGNFSWDSKS--PTLSNINLDIPVGSLVAIVGGTGEGKTSLV 684
L NPP+EP LPA+SI+NG FSWD K PTLS+IN++IPVGSLVAI+GGTGEGKTSL+
Sbjct: 601 NLKQNPPIEPGLPAISIENGYFSWDRKEEKPTLSDINVEIPVGSLVAIIGGTGEGKTSLI 660
Query: 685 SAMLGELPPLKDASVVIRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQ 744
SAM+GELPPL + + IRGTVAYVPQISWI+NAT+R+NILFGS+F+ +Y K +D++ALQ
Sbjct: 661 SAMIGELPPLANGNATIRGTVAYVPQISWIYNATVRENILFGSKFEYEQYRKVIDMTALQ 720
Query: 745 HDLDLLPDRDLTEIGERGVNISGGQKQRVSMARA------------------------VF 780
HDL+LLP RD TEIGERGVNISGGQKQRVS+ARA VF
Sbjct: 721 HDLNLLPGRDFTEIGERGVNISGGQKQRVSIARAVYSNSDIYIFDDPLSALDAHIAQEVF 780
Query: 781 NSCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLMENA 840
+CIKE LRGKTR+LVTNQLHFLP VD+IILVSEGMIKE+G+FEELSK G LFQKLMENA
Sbjct: 781 RNCIKEGLRGKTRVLVTNQLHFLPQVDKIILVSEGMIKEQGTFEELSKSGPLFQKLMENA 840
Query: 841 GKMEEMEEREEKDDSINSNQEVSKPVANRAVQVNEFPKNESYTKKGKRGRSVLVKQEERE 900
GKME+ + E+++ N P+ N A++ E P + SY KKGK +SVL+K+EERE
Sbjct: 841 GKMEQADNNEDRESHGTDN---DLPMNNEAIE--ELPSDASYEKKGKLRKSVLIKKEERE 895
Query: 901 TGIVSGSVLTRYKNALGGPWVIMILFACYLSTEVLRISSSTWLSFWTDQSTSKNYNPGFY 960
TG+VS V+ RYK+ALGG WV+ ILF+CY TEVLRISSSTWLS WT Q ++ +Y+P ++
Sbjct: 896 TGVVSWKVVMRYKSALGGLWVVSILFSCYTLTEVLRISSSTWLSVWTSQDSTADYDPTYF 955
Query: 961 IAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILRAPMLFFHTNPIGRVINR 1020
+ IY + +FGQV+V L NSYWLII SLRAAK LHD+ML+ ILRAPM+FF TNP+GR+INR
Sbjct: 956 LLIYALFSFGQVSVALANSYWLIICSLRAAKNLHDAMLDKILRAPMVFFQTNPVGRIINR 1015
Query: 1021 FSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLILFYAAYLYYQS 1080
F++D GDID NV + VNMF+ Q+WQLLSTFVLIG VSTISLWAIMPLLI FYAAYLYYQS
Sbjct: 1016 FAKDTGDIDTNVFNLVNMFLGQVWQLLSTFVLIGTVSTISLWAIMPLLIFFYAAYLYYQS 1075
Query: 1081 TAREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSS 1140
TAREVKR+DSITRSPVYA FGE+LNGLS+IRA+KAYDRMA INGK MD NIRFTL N SS
Sbjct: 1076 TAREVKRMDSITRSPVYAHFGESLNGLSSIRAYKAYDRMAHINGKFMDKNIRFTLVNISS 1135
Query: 1141 NRWLTIRLETLGGIMIWLIATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQ 1200
NRWLTIRLETLGG+MIWLIAT AV+QN RA NQ FASTMGLLLSYTLNITNLLSGVLRQ
Sbjct: 1136 NRWLTIRLETLGGLMIWLIATSAVLQNARAANQAMFASTMGLLLSYTLNITNLLSGVLRQ 1195
Query: 1201 ASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSGSIKFEDVVLRYRPELPPVL 1260
ASRAENSLN+VERV TYI+L +EAPG++E++RPPP WP+SGSI+FEDVVLRYRPELPPVL
Sbjct: 1196 ASRAENSLNSVERVDTYINLETEAPGVIETHRPPPGWPTSGSIEFEDVVLRYRPELPPVL 1255
Query: 1261 HGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302
HGLSFTV P+EK+GIVGRTGAGKSSMLNALFRIVEL++G+ I
Sbjct: 1256 HGLSFTVPPTEKIGIVGRTGAGKSSMLNALFRIVELQKGKII 1297
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1303 | ||||||
| TAIR|locus:2028155 | 1495 | ABCC11 "ATP-binding cassette C | 0.576 | 0.502 | 0.665 | 0.0 | |
| TAIR|locus:2204202 | 1622 | ABCC1 "ATP-binding cassette C1 | 0.583 | 0.468 | 0.627 | 0.0 | |
| TAIR|locus:2061559 | 1623 | ABCC2 "ATP-binding cassette C2 | 0.575 | 0.462 | 0.622 | 0.0 | |
| ZFIN|ZDB-GENE-040426-1523 | 1567 | abcc2 "ATP-binding cassette, s | 0.387 | 0.322 | 0.378 | 9.9e-180 | |
| DICTYBASE|DDB_G0284867 | 1593 | abcC8 "ABC transporter C famil | 0.480 | 0.392 | 0.346 | 1e-174 | |
| UNIPROTKB|F1PHV0 | 1544 | ABCC2 "Uncharacterized protein | 0.360 | 0.304 | 0.363 | 5.6e-163 | |
| MGI|MGI:1352447 | 1543 | Abcc2 "ATP-binding cassette, s | 0.357 | 0.302 | 0.356 | 1.9e-160 | |
| UNIPROTKB|Q5F364 | 1525 | ABCC1 "Multidrug resistance-as | 0.373 | 0.319 | 0.361 | 1.3e-158 | |
| UNIPROTKB|E1C6S5 | 1552 | ABCC2 "Uncharacterized protein | 0.358 | 0.300 | 0.372 | 2.9e-158 | |
| UNIPROTKB|J9NY13 | 1523 | ABCC3 "Uncharacterized protein | 0.362 | 0.309 | 0.364 | 5.9e-158 |
| TAIR|locus:2028155 ABCC11 "ATP-binding cassette C11" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2637 (933.3 bits), Expect = 0., Sum P(2) = 0.
Identities = 501/753 (66%), Positives = 594/753 (78%)
Query: 32 LDWYCRPVANGTWAKTVDSTFGAYTTCAVDXXXXXXXXXXXXXXCIFRIWLMNKNSKARR 91
L+WYC+P+A G W KT D FGAYT CA+D C +RIW+ N+KA+
Sbjct: 6 LNWYCKPIAEGFWEKTPDGAFGAYTPCAIDSLVMIVSNSVLLGLCFYRIWITLYNAKAQI 65
Query: 92 YRLSSNCYNYMLGLLACYCTAEPLLRLVMGISIFNLDGETSFAPFEMVSLIIEALAWCSM 151
Y L Y+ +L +LAC C EP+LRLVMGIS+F++ ET PFE+ SL++EA AW +M
Sbjct: 66 YVLRKMYYHCVLWILACCCVVEPVLRLVMGISLFDMGDETDLPPFEVASLMVEAFAWFAM 125
Query: 152 LIMICLETKFYIREFRWYVRFGVIYVLVGDAVILNLIIPMRDYYSRITLYLYISMVFCQA 211
L++I LETK Y++EFRWYVRFGV+YVLV DAV+L+L++P+++ +R LYL IS CQA
Sbjct: 126 LVLIGLETKQYVKEFRWYVRFGVVYVLVADAVLLDLVLPLKNSINRTALYLCISSRCCQA 185
Query: 212 LFGILILVYIPNLDPYPGYTIMQPEFVDNAEYEALPGGEHVCPERNASILSRTSFGWMTP 271
LFGIL+LVYIP LD YP Y I+ E +DN EY+ALPGG ++CPER ASI S F WMTP
Sbjct: 186 LFGILLLVYIPELDLYPDYHILNNESLDNVEYDALPGGVNICPERYASIFSGIYFSWMTP 245
Query: 272 LLQLGYKKPITEKDVWKLDTWDQTEILIEKFHRCWIEESQRSKPWLLRALNNSFGGRFWL 331
L+QLGY+KPITE+DVW+LD WDQTE LI++F RCW EES+R KPWLLRALNNS G RFWL
Sbjct: 246 LMQLGYRKPITERDVWQLDQWDQTETLIKRFQRCWTEESRRPKPWLLRALNNSLGRRFWL 305
Query: 332 GGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPAWIGYIYAFLIFVGVSFGVLTEAQYFQNV 391
GG+FK+G+DLSQFVGPV+L+H+LQSM GDPAW+GY+YAFLIF GV+FGVL ++QYFQ+V
Sbjct: 306 GGIFKVGHDLSQFVGPVILSHILQSMIEGDPAWVGYVYAFLIFFGVTFGVLCQSQYFQHV 365
Query: 392 WRVGFRLRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQLHGLWSAP 451
RVGFRLRSTLVAAIF K+LRLT++ARK F SGKVTNMITTDANALQ I++QLHGLWSAP
Sbjct: 366 GRVGFRLRSTLVAAIFHKSLRLTNKARKNFASGKVTNMITTDANALQLIAEQLHGLWSAP 425
Query: 452 FRITLSMVLLYQQXXXXXXXXXXXXXXXXXXQTFIISKMRKLTKEGLQWTDRRVSLTNEI 511
FRI +SMVLLYQQ QT I+ KMRKLTKEGLQWTD+RV + EI
Sbjct: 426 FRIIVSMVLLYQQLGVASIFGSLILFLLIPFQTLIVRKMRKLTKEGLQWTDKRVGIIYEI 485
Query: 512 LAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSIPXXXXXXSFGTF 571
LA+MD VKCYAWEKSF+SR+Q IR++ELSWFRKAQ LSAFNSFILNS P SFG +
Sbjct: 486 LASMDIVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSTPVVVTLVSFGVY 545
Query: 572 TLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRXXXXXXXXXRILMXX 631
LLGGDLTPARAFTSLSLFAVLR PL+ LPNL+SQ VNANVSLQR RIL
Sbjct: 546 VLLGGDLTPARAFTSLSLFAVLRSPLSTLPNLISQAVNANVSLQRIEELLLSEERILAQN 605
Query: 632 XXXXXXXXAVSIKNGNFSWDSKS--PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLG 689
A+SIKNG FSWDSK+ PTLS+INL+IPVGSLVAIVGGTGEGKTSL+SAMLG
Sbjct: 606 PPLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLG 665
Query: 690 ELPPLKDASVVIRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDL 749
EL + +SV IRG+VAYVPQ+SWIFNATLR+NILFGS+F+ +YW+ +DV+ALQHDLDL
Sbjct: 666 ELSHAETSSVDIRGSVAYVPQVSWIFNATLRENILFGSDFESERYWRAIDVTALQHDLDL 725
Query: 750 LPDRDLTEIGERGVNISGGQKQRVSMARAVFNS 782
P RD TEIGERGVNISGGQKQRVSMARAV+++
Sbjct: 726 FPGRDRTEIGERGVNISGGQKQRVSMARAVYSN 758
|
|
| TAIR|locus:2204202 ABCC1 "ATP-binding cassette C1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2518 (891.4 bits), Expect = 0., Sum P(2) = 0.
Identities = 481/766 (62%), Positives = 576/766 (75%)
Query: 27 MASGPLDWYCRPVANGTWAKTVDSTFGAYTTCAVDXXXXXXXXXXXXXXCIFRIWLMNKN 86
M PLDWYC+PV NG W KTVD FGAYT CA+D C++R+WL+ K+
Sbjct: 1 MGFEPLDWYCKPVPNGVWTKTVDYAFGAYTPCAIDSFVLGISHLVLLILCLYRLWLITKD 60
Query: 87 SKARRYRLSSNCYNYMLGLLACYCTAEPLLRLVMGISIFNLDGETSFAPFEMVSLIIEAL 146
K ++ L S ++Y L LLA Y TAEPL RLVM IS+ +LDG F P+E L++EA
Sbjct: 61 HKVDKFCLRSKWFSYFLALLAAYATAEPLFRLVMRISVLDLDG-AGFPPYEAFMLVLEAF 119
Query: 147 AWCSMLIMICLETKFYIREFRWYVRFGVIYVLVGDAVILNLIIPMRDYYSRITLYLYISM 206
AW S L+M +ETK YI E RWYVRF VIY LVGD V+LNL++ +++YY LYLYIS
Sbjct: 120 AWGSALVMTVVETKTYIHELRWYVRFAVIYALVGDMVLLNLVLSVKEYYGSFKLYLYISE 179
Query: 207 VFCQALFGILILVYIPNLDPYPGYTIMQPEFVDNAEYEALPGGEHVCPERNASILSRTSF 266
V Q FG L+ VY PNLDPYPGYT + E ++ EYE LPGGE++CPER+A++ F
Sbjct: 180 VAVQVAFGTLLFVYFPNLDPYPGYTPVGTENSEDYEYEELPGGENICPERHANLFDSIFF 239
Query: 267 GWMTPLLQLGYKKPITEKDVWKLDTWDQTEILIEKFHRCWIEESQRSKPWLLRALNNSFG 326
W+ PL+ LG K+P+TEKDVW LDTWD+TE L+ F + W +E ++ KPWLLRALNNS G
Sbjct: 240 SWLNPLMTLGSKRPLTEKDVWHLDTWDKTETLMRSFQKSWDKELEKPKPWLLRALNNSLG 299
Query: 327 GRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPAWIGYIYAFLIFVGVSFGVLTEAQ 386
GRFW GG +KIGND SQFVGP+LLN LL+SMQ +PAWIGYIYA IFVGV GVL EAQ
Sbjct: 300 GRFWWGGFWKIGNDCSQFVGPLLLNELLKSMQLNEPAWIGYIYAISIFVGVVLGVLCEAQ 359
Query: 387 YFQNVWRVGFRLRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQLHG 446
YFQNV RVG+RLRS L+AA+FRK+LRLT+E RK F +GK+TN++TTDA +LQQI Q LH
Sbjct: 360 YFQNVMRVGYRLRSALIAAVFRKSLRLTNEGRKKFQTGKITNLMTTDAESLQQICQSLHT 419
Query: 447 LWSAPFRITLSMVLLYQQXXXXXXXXXXXXXXXXXXQTFIISKMRKLTKEGLQWTDRRVS 506
+WSAPFRI +++VLLYQQ QT IISK +KLTKEGLQ TD+R+
Sbjct: 420 MWSAPFRIIVALVLLYQQLGVASIIGALFLVLMFPIQTVIISKTQKLTKEGLQRTDKRIG 479
Query: 507 LTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSIPXXXXXX 566
L NE+LAAMDTVKCYAWE SFQS+VQ++RDDELSWFRKAQ LSAFN FILNSIP
Sbjct: 480 LMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNMFILNSIPVLVTVV 539
Query: 567 SFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRXXXXXXXXXR 626
SFG F+LLGGDLTPARAFTSLSLF+VLRFPL MLPN+++Q+VNANVSL R R
Sbjct: 540 SFGVFSLLGGDLTPARAFTSLSLFSVLRFPLFMLPNIITQMVNANVSLNRLEEVLSTEER 599
Query: 627 ILMXXXXXXXXXXAVSIKNGNFSWDSKS--PTLSNINLDIPVGSLVAIVGGTGEGKTSLV 684
+L+ A+SI+NG FSWDSK+ PTLSNINLDIP+GSLVA+VG TGEGKTSL+
Sbjct: 600 VLLPNPPIEPGQPAISIRNGYFSWDSKADRPTLSNINLDIPLGSLVAVVGSTGEGKTSLI 659
Query: 685 SAMLGELPPLKDASVVIRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQ 744
SAMLGELP DA+V +RG+VAYVPQ+SWIFNAT+R NILFG+ FD KY + +DV+ALQ
Sbjct: 660 SAMLGELPARSDATVTLRGSVAYVPQVSWIFNATVRDNILFGAPFDQEKYERVIDVTALQ 719
Query: 745 HDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF-NS--CIKEE 787
HDL+LLP DLTEIGERGVNISGGQKQRVSMARAV+ NS CI ++
Sbjct: 720 HDLELLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVCILDD 765
|
|
| TAIR|locus:2061559 ABCC2 "ATP-binding cassette C2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2479 (877.7 bits), Expect = 0., Sum P(2) = 0.
Identities = 469/753 (62%), Positives = 566/753 (75%)
Query: 32 LDWYCRPVANGTWAKTVDSTFGAYTTCAVDXXXXXXXXXXXXXXCIFRIWLMNKNSKARR 91
++WYC+PV NG W K V + FGAYT CA D C++RIWL K+ K R
Sbjct: 6 IEWYCKPVPNGVWTKQVANAFGAYTPCATDSFVLGISQLVLLVLCLYRIWLALKDHKVER 65
Query: 92 YRLSSNCYNYMLGLLACYCTAEPLLRLVMGISIFNLDGETSFAPFEMVSLIIEALAWCSM 151
+ L S YNY L LLA Y TAEPL RL+MGIS+ + DG PFE L ++A AW ++
Sbjct: 66 FCLRSRLYNYFLALLAAYATAEPLFRLIMGISVLDFDGP-GLPPFEAFGLGVKAFAWGAV 124
Query: 152 LIMICLETKFYIREFRWYVRFGVIYVLVGDAVILNLIIPMRDYYSRITLYLYISMVFCQA 211
++MI +ETK YIRE RWYVRF VIY LVGD V+LNL++ +++YYS LYLY S V Q
Sbjct: 125 MVMILMETKIYIRELRWYVRFAVIYALVGDMVLLNLVLSVKEYYSSYVLYLYTSEVGAQV 184
Query: 212 LFGILILVYIPNLDPYPGYTIMQPEFVDNAEYEALPGGEHVCPERNASILSRTSFGWMTP 271
LFGIL+ +++PNLD YPGY ++ E VD+ EYE + G+ +CPE++A+I + F WM P
Sbjct: 185 LFGILLFMHLPNLDTYPGYMPVRSETVDDYEYEEISDGQQICPEKHANIFDKIFFSWMNP 244
Query: 272 LLQLGYKKPITEKDVWKLDTWDQTEILIEKFHRCWIEESQRSKPWLLRALNNSFGGRFWL 331
L+ LG K+P+TEKDVW LDTWDQTE L F W +E Q+ +PWLLRALNNS GGRFW
Sbjct: 245 LMTLGSKRPLTEKDVWYLDTWDQTETLFTSFQHSWDKELQKPQPWLLRALNNSLGGRFWW 304
Query: 332 GGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPAWIGYIYAFLIFVGVSFGVLTEAQYFQNV 391
GG +KIGND SQFVGP+LLN LL+SMQ PAW+GYIYAF IFVGV FGVL EAQYFQNV
Sbjct: 305 GGFWKIGNDCSQFVGPLLLNQLLKSMQEDAPAWMGYIYAFSIFVGVVFGVLCEAQYFQNV 364
Query: 392 WRVGFRLRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQLHGLWSAP 451
RVG+RLRS L+AA+FRK+LRLT+E R+ F +GK+TN++TTDA +LQQI Q LH +WSAP
Sbjct: 365 MRVGYRLRSALIAAVFRKSLRLTNEGRRKFQTGKITNLMTTDAESLQQICQSLHTMWSAP 424
Query: 452 FRITLSMVLLYQQXXXXXXXXXXXXXXXXXXQTFIISKMRKLTKEGLQWTDRRVSLTNEI 511
FRI ++++LLYQQ QT IISKM+KLTKEGLQ TD+R+ L NE+
Sbjct: 425 FRIIIALILLYQQLGVASLIGALLLVLMFPLQTVIISKMQKLTKEGLQRTDKRIGLMNEV 484
Query: 512 LAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSIPXXXXXXSFGTF 571
LAAMDTVKCYAWE SFQS+VQ++RDDELSWFRK+Q L A N FILNSIP SFG F
Sbjct: 485 LAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKSQLLGALNMFILNSIPVLVTIVSFGVF 544
Query: 572 TLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRXXXXXXXXXRILMXX 631
TLLGGDLTPARAFTSLSLFAVLRFPL MLPN+++QVVNANVSL+R RIL+
Sbjct: 545 TLLGGDLTPARAFTSLSLFAVLRFPLFMLPNIITQVVNANVSLKRLEEVLATEERILLPN 604
Query: 632 XXXXXXXXAVSIKNGNFSWDSKS--PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLG 689
A+SI+NG FSWDSK PTLSNINLD+P+GSLVA+VG TGEGKTSL+SA+LG
Sbjct: 605 PPIEPGEPAISIRNGYFSWDSKGDRPTLSNINLDVPLGSLVAVVGSTGEGKTSLISAILG 664
Query: 690 ELPPLKDASVVIRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDL 749
ELP DA V +RG+VAYVPQ+SWIFNAT+R NILFGS FD KY + +DV++L+HDL+L
Sbjct: 665 ELPATSDAIVTLRGSVAYVPQVSWIFNATVRDNILFGSPFDREKYERAIDVTSLKHDLEL 724
Query: 750 LPDRDLTEIGERGVNISGGQKQRVSMARAVFNS 782
LP DLTEIGERGVNISGGQKQRVSMARAV+++
Sbjct: 725 LPGGDLTEIGERGVNISGGQKQRVSMARAVYSN 757
|
|
| ZFIN|ZDB-GENE-040426-1523 abcc2 "ATP-binding cassette, sub-family C (CFTR/MRP), member 2" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 890 (318.4 bits), Expect = 9.9e-180, Sum P(4) = 9.9e-180
Identities = 195/515 (37%), Positives = 300/515 (58%)
Query: 274 QLGYKKPITEKDVWKLDTWDQTEILIEKFHRCWIEESQRSKPWLLRALNNSFGGRFWLGG 333
Q G K +++ DV ++T + E +K + +S + WL+ + SF G
Sbjct: 287 QNGLAKGVSQ-DVLVMETETEKESKKKKKKKQKDSDSDYPQSWLVTTIVKSFKGVLLESA 345
Query: 334 LFKIGNDLSQFVGPVLLNHLLQSMQRGDP-AWIGYIYAFLIFVGVSF--GVLTEAQYFQN 390
LFK+ DL F P LL ++ Q D AW GY+YA L+ + V+F V+ + QYFQ
Sbjct: 346 LFKLLQDLLSFASPQLLKLMIAFTQNKDSYAWTGYLYAVLLVL-VAFVQSVVLQ-QYFQR 403
Query: 391 VWRVGFRLRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQLHGLWSA 450
+ +G ++R+ ++AA+++K L +++++RK +G++ N+++ DA ++ +H LWS
Sbjct: 404 CFILGMKVRTAIMAAVYKKALVVSNDSRKESTAGEIVNLMSADAQRFNDVTNFIHLLWSC 463
Query: 451 PFRITLSMVLLYQQXXXXXXXXXXXXXXXXXXQTFIISKMRKLTKEGLQWTDRRVSLTNE 510
P +I LS+ L+ + ++ +K R+ + +++ D R+ + N+
Sbjct: 464 PLQIALSIAFLWIELGPSVLSGLLVMVLMVPINGWLATKSRQFQMQNMKFKDSRMKIVND 523
Query: 511 ILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSIPXXXXXXSFGT 570
+L + +K YAWE SF+++VQ IR+ EL RK +LS+ ++FI + P +F
Sbjct: 524 LLNGIKILKYYAWETSFEAQVQEIREKELKVMRKFAYLSSVSTFIFSCAPALVSLATFAV 583
Query: 571 FTLLGGD--LTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRXXXXXXXXXRIL 628
F + D L +AFTS+SLF +LRFPL MLP L+S +V +VS +R
Sbjct: 584 FVSVSPDNILDAEKAFTSISLFNILRFPLAMLPQLISIMVQTSVSKKRLEKFLSGDDLDT 643
Query: 629 MXXXXXXXXXXAVSIKNGNFSWDSKS-PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAM 687
AVS+ NG ++W+ + P L ++LDI G LVA+VG G GKTSLVSA+
Sbjct: 644 TTVTHNSSITAAVSMTNGTYAWERDTEPVLKQVSLDIKPGRLVAVVGAVGSGKTSLVSAL 703
Query: 688 LGELPPLKDASVVIRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDL 747
LGEL +K ++ I G+VAYVPQ +WI NATL+ NILFGS D +Y + AL+ DL
Sbjct: 704 LGELHSIK-GNININGSVAYVPQQAWIQNATLKDNILFGSSVDEERYQSVIKACALEPDL 762
Query: 748 DLLPDRDLTEIGERGVNISGGQKQRVSMARAVFNS 782
DLLP RD TEIGE+G+N+SGGQKQRVS+ARAV++S
Sbjct: 763 DLLPGRDQTEIGEKGINLSGGQKQRVSLARAVYSS 797
|
|
| DICTYBASE|DDB_G0284867 abcC8 "ABC transporter C family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 917 (327.9 bits), Expect = 1.0e-174, Sum P(3) = 1.0e-174
Identities = 228/658 (34%), Positives = 342/658 (51%)
Query: 135 PFEMVSLIIEALAWCSMLIMICLETKFYIREFRWYVR-FGVIYVLVGDAVI--LNLIIPM 191
PFE++ ++ + W L ++ LE K + W +R + V V + L L I
Sbjct: 99 PFEILYSVVTVVQWTVSLGLVYLEMKKG-QSRSWEIRLYWVFAFFVATVKLRTLTLAIAG 157
Query: 192 RDYYSRITLYLYISMVFCQALFGILILVYIPNLDPYPGYTIMQPEFVDNAE-YEALPGGE 250
+ Y+ + Y S L ILIL +I F DN E Y+ L E
Sbjct: 158 KSIYN-VGFLEYFSYFVGYCL--ILIL------------SITSVLFFDNLESYQNLEENE 202
Query: 251 HVCPERNASILSRTSFGWMTPLLQLGYKKPITEKDVWKLDTWDQTEILIEKFHRCWIEES 310
+ E NA++ SR +F W+ +L G+KK + DV L DQ+ +L EKF + W E+
Sbjct: 203 -ISKEVNANLFSRLTFWWINSVLVKGHKKALEISDVPTLGEIDQSILLSEKFEKAWEEQL 261
Query: 311 QRSKPWLLRALNNSFGGRFWLGGLFKIGNDLSQFVGPVLLNHLL---QSMQRGDPAWIGY 367
++ P L AL +FG F++ LFKI DL FVGP LL +L +S + G
Sbjct: 262 KKPNPSLPWALAKAFGPHFYIAALFKIIQDLLIFVGPTLLKRVLGFVESRDGSQDTYDGL 321
Query: 368 IYAFLIFVGVSFGVLTEAQYFQNVWRVGFRLRSTLVAAIFRKTLRLTHEARKGFPSGKVT 427
IYA L F+ L QYF +RVG LRS +V A+++K L+ + R+G G++
Sbjct: 322 IYALLYFLAPVVQSLLLHQYFHRCYRVGMWLRSAVVTAVYKKALKTS--LREGTTIGEIV 379
Query: 428 NMITTDANALQQISQQLHGLWSAPFRITLSMVLLYQQXXXXXXXXXXXXXXXXXXQTFII 487
N+++ DA + LH +WSAP ++ +S+VLLY+ I
Sbjct: 380 NLMSVDAQKFMDLCPYLHMIWSAPLQLAISLVLLYRILNASVFAGLGIMLVMIPINLAIS 439
Query: 488 SKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQF 547
+ +K ++ DRR NE+L + +K Y+WE+SF V IR+ EL + ++
Sbjct: 440 NLAKKRQTISMKLKDRRTKAVNEVLNGIKVIKLYSWEQSFMDHVNEIRNKELDVMKAIKY 499
Query: 548 LSAFNSFILNSIPXXXXXXSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQV 607
+ F+ + + P +F + L G L+ +AF +LSLF V++FP+NMLP+++S +
Sbjct: 500 IQGFSLLLWSMSPVFVSVSTFTVYILTGQVLSATQAFPALSLFNVMQFPINMLPSVVSSI 559
Query: 608 VNANVS---LQRXXXXXXXXXRILMXXXXXXXXXXAVSIKNGNFSWDSKSPTLSNINLDI 664
+ A+VS LQ+ ++ AV I N W+ P L +INL I
Sbjct: 560 IEASVSVARLQKFLLKKDLDPNVV--EHHINEPGIAVKIDNATLEWEPNKPILHDINLTI 617
Query: 665 PVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISWIFNATLRKNIL 724
G LVAIVG G GK+S+VS+++G+L K +V + G+VA V Q +WI NATL+ NIL
Sbjct: 618 KKGELVAIVGQVGSGKSSIVSSLVGDLDKTK-GTVAVNGSVALVSQQAWIQNATLKNNIL 676
Query: 725 FGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFNS 782
F E + KY V L+ D+ +LP D TEIGE+G+N+SGGQKQRVS+ARAV+N+
Sbjct: 677 FAKELNQDKYQSVVQACCLEPDIKILPGGDQTEIGEKGINLSGGQKQRVSIARAVYNN 734
|
|
| UNIPROTKB|F1PHV0 ABCC2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 776 (278.2 bits), Expect = 5.6e-163, Sum P(4) = 5.6e-163
Identities = 173/476 (36%), Positives = 266/476 (55%)
Query: 314 KPWLLRALNNSFGGRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDP-AWIGYIYAFL 372
K WL+++L +F L K+ DL F+ P LL L+ D W GY Y+ L
Sbjct: 307 KSWLVKSLFKTFYVILLKSFLLKLVFDLLTFLNPQLLKLLISFANDPDMYVWTGYFYSVL 366
Query: 373 IFVGVSFGVLTEAQYFQNVWRVGFRLRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITT 432
FV L YFQ + +G +R+T++A+I++K L L+++ARK + G+ N+++
Sbjct: 367 FFVVALIQSLCLQSYFQMCFMLGVNVRTTIMASIYKKALTLSNQARKQYTIGETVNLMSV 426
Query: 433 DANALQQISQQLHGLWSAPFRITLSMVLLYQQXXXXXXXXXXXXXXXXXXQTFIISKMRK 492
DA L ++ +H LWS +I LS+ L+ + + SK R
Sbjct: 427 DAQKLMDVTNFIHLLWSNVLQIALSIYFLWAELGPSILAGVGVMILLIPVNGLLASKSRA 486
Query: 493 LTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFN 552
+ + ++ D+R+ + NEIL+ + +K +AWE SF+++V +R EL + +
Sbjct: 487 IQVKNMKNKDKRLKIMNEILSGIKILKYFAWEPSFKNQVHELRKKELKNLLTFGQMQSVM 546
Query: 553 SFILNSIPXXXXXXSFGTFTLLGGD--LTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNA 610
F+L P +F +TL+ + L +AFTS++LF +LRFPL+MLP ++S ++ A
Sbjct: 547 VFLLYLTPVLVSVITFSVYTLVDSNNVLDAEKAFTSITLFNILRFPLSMLPMVISSLLQA 606
Query: 611 NVSLQRXXXXXXXXXRILMXXXXXXXXXXAVSIKNGNFSWDSKSP-TLSNINLDIPVGSL 669
+VS +R AV +F+WD S T+ ++NLDI G L
Sbjct: 607 SVSRERLEKYLGGDDLDTSAIRRDSSSDKAVQFSEASFTWDRDSEATIRDVNLDIMPGQL 666
Query: 670 VAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISWIFNATLRKNILFGSEF 729
VA+VG G GK+SL+SAMLGE+ + + I+GT+AYVPQ SWI N T++ NILFGSE
Sbjct: 667 VAVVGTVGSGKSSLMSAMLGEMEDVH-GHITIKGTIAYVPQQSWIQNGTIKDNILFGSEL 725
Query: 730 DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF-NSCI 784
D +Y + ++ AL DL++LP DL EIGE+G+N+SGGQKQR+S+ARA + NS I
Sbjct: 726 DEKRYQQVLEACALLPDLEVLPGGDLAEIGEKGINLSGGQKQRISLARATYQNSDI 781
|
|
| MGI|MGI:1352447 Abcc2 "ATP-binding cassette, sub-family C (CFTR/MRP), member 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 792 (283.9 bits), Expect = 1.9e-160, Sum P(4) = 1.9e-160
Identities = 168/471 (35%), Positives = 268/471 (56%)
Query: 314 KPWLLRALNNSFGGRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDP-AWIGYIYAFL 372
K WL++AL +F + K+ +D+ F+ P LL L+ ++ D W+GYIYA L
Sbjct: 305 KSWLVKALFKTFYVVILKSFILKLAHDILLFLNPQLLKFLIGFVKDPDSYPWVGYIYAIL 364
Query: 373 IFVGVSFGVLTEAQYFQNVWRVGFRLRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITT 432
+F YFQ + +G +R+T++A++++K L L++ AR+ + G+ N+++
Sbjct: 365 MFSVTLIQSFFLQCYFQFCFVLGMTVRTTIIASVYKKALTLSNLARRQYTIGETVNLMSV 424
Query: 433 DANALQQISQQLHGLWSAPFRITLSMVLLYQQXXXXXXXXXXXXXXXXXXQTFIISKMRK 492
D+ L ++ +H LWS+ +I LS+ L+++ + +K+RK
Sbjct: 425 DSQKLMDVTNYIHLLWSSVLQIALSIFFLWRELGPSILAGVGLMVLLVPVNGVLATKIRK 484
Query: 493 LTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFN 552
+ + ++ D+R+ + NEIL+ + +K +AWE SF+ +V SIR EL + L
Sbjct: 485 IQVQNMKNKDKRLKIMNEILSGIKILKYFAWEPSFKEQVNSIRKKELRNLLRFSQLQTIL 544
Query: 553 SFILNSIPXXXXXXSFGTFTLLGGD--LTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNA 610
FIL+ P +F + L+ L +AFTS++LF +LRFPL MLP ++S V+ A
Sbjct: 545 IFILHLTPTLVSVITFSVYVLVDSQNVLNAEKAFTSITLFNILRFPLAMLPMVISSVIQA 604
Query: 611 NVSLQRXXXXXXXXXRILMXXXXXXXXXXAVSIKNGNFSWDSK-SPTLSNINLDIPVGSL 669
+VS+ R L AV +F+WD T+ ++NLDI G L
Sbjct: 605 SVSVDRLEQYLGSDDLDLSAIRHVCHFDKAVQFSEASFTWDRDLEATIQDVNLDIKPGQL 664
Query: 670 VAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISWIFNATLRKNILFGSEF 729
VA+VG G GK+SL+SAMLGE+ + + I+G++AYVPQ +WI N T++ NILFGSE+
Sbjct: 665 VAVVGTVGSGKSSLISAMLGEMENVH-GHITIKGSIAYVPQQAWIQNGTIKDNILFGSEY 723
Query: 730 DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF 780
D KY + ++ AL DL++LP D+ EIGE+G+N+SGGQK RVS+ARA +
Sbjct: 724 DEKKYQRVIEACALLPDLEMLPGGDMAEIGEKGINLSGGQKHRVSLARATY 774
|
|
| UNIPROTKB|Q5F364 ABCC1 "Multidrug resistance-associated protein 1" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 810 (290.2 bits), Expect = 1.3e-158, Sum P(4) = 1.3e-158
Identities = 179/495 (36%), Positives = 277/495 (55%)
Query: 293 DQTEILIEKFHRCWIEESQRS-KPWLLRALNNSFGGRFWLGGLFKIGNDLSQFVGPVLLN 351
D ++E+ I+ SQRS + L + L +FG F + LFK +DL F GP +L
Sbjct: 287 DSNGEVMEEAEALIIKPSQRSSEASLSKVLYKTFGPYFLMSFLFKAAHDLLMFTGPEILK 346
Query: 352 HLLQSMQ-RGDPAWIGYIYAFLIFVGVSFGVLTEAQYFQNVWRVGFRLRSTLVAAIFRKT 410
L+ + + P W GY Y L+FV L QYF + G RL++ +V I+RK
Sbjct: 347 LLINFVNNKSAPNWQGYFYTGLLFVCACLQTLILHQYFHICFVTGMRLKTAIVGVIYRKA 406
Query: 411 LRLTHEARKGFPSGKVTNMITTDANALQQISQQLHGLWSAPFRITLSMVLLYQQXXXXXX 470
L +T+ ARK G++ N+++ DA ++ ++ +WSAP ++ L++ LL++
Sbjct: 407 LVITNSARKTSTVGEIVNLMSVDAQRFMDLATYINMIWSAPLQVILALYLLWRNLGPSVL 466
Query: 471 XXXXXXXXXXXXQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSR 530
+ K + ++ D R+ L NEIL + +K YAWE +F+ +
Sbjct: 467 AGVAVMILLVPINAVMAMKTKTYQVAQMKSKDNRIKLMNEILNGIKVLKLYAWELAFREK 526
Query: 531 VQSIRDDELSWFRKAQFLSAFNSFILNSIPXXXXXXSFGTFTLLGGD--LTPARAFTSLS 588
V IR EL +K+ +L+A +F P +F + + + L +AF SL+
Sbjct: 527 VLEIRQKELKVLKKSAYLAAMGTFTWVCAPFLVALSTFAVYVKVNKNNILDAQKAFVSLA 586
Query: 589 LFAVLRFPLNMLPNLLSQVVNANVSLQRXXXXXXXXXRI--LMXXXXXXXXXXAVSIKNG 646
LF +LRFPLN+LP ++S +V A+VSL+R + ++ +KN
Sbjct: 587 LFNILRFPLNILPMVISSIVEASVSLKRLRVFLSHEELDPDSIIRGPITNAEGSIVVKNA 646
Query: 647 NFSWDSKSP-TLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTV 705
FSW P +L++IN +P GSL+A+VG G GK+SL+SA+LGE+ K+ VV++G++
Sbjct: 647 TFSWSKTDPPSLNSINFTVPEGSLIAVVGQVGCGKSSLLSALLGEMDK-KEGYVVVKGSI 705
Query: 706 AYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNI 765
AYVPQ +WI NATL NI+FG E + ++Y + ++ AL DL++LP D TEIGE+GVN+
Sbjct: 706 AYVPQQAWIQNATLEDNIIFGREMNESRYKRVIEACALLPDLEILPMGDRTEIGEKGVNL 765
Query: 766 SGGQKQRVSMARAVF 780
SGGQKQRVS+ARAV+
Sbjct: 766 SGGQKQRVSLARAVY 780
|
|
| UNIPROTKB|E1C6S5 ABCC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 813 (291.2 bits), Expect = 2.9e-158, Sum P(4) = 2.9e-158
Identities = 176/472 (37%), Positives = 266/472 (56%)
Query: 314 KPWLLRALNNSFGGRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDP-AWIGYIYAFL 372
K WL++AL +F + FK+ +D+ FV P LL L+ + + AW GY+Y+ L
Sbjct: 326 KKWLMKALFRTFLQNLMMSVAFKLVHDVLVFVSPQLLKLLITFVSDAEAFAWQGYLYSIL 385
Query: 373 IFVGVSFGVLTEAQYFQNVWRVGFRLRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITT 432
+F+ L QYF +++G +R++L+AAI++K L ++ RK G+ N+++
Sbjct: 386 LFLTAMLQSLCLQQYFNLCFQLGTNVRASLIAAIYKKALTMSSATRKESTVGETVNLMSA 445
Query: 433 DANALQQISQQLHGLWSAPFRITLSMVLLYQQXXXXXXXXXXXXXXXXXXQTFIISKMRK 492
DA ++ +H LWS+P +I LS+V L+ + F+++K +
Sbjct: 446 DAQRFMDMANFVHQLWSSPLQIILSIVFLWGELGPSVLAGLAVMVLLIPINGFLVNKSKH 505
Query: 493 LTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFN 552
+ ++ D R+ + E+L + +K +AWE SF+ R+ IR EL K +L + +
Sbjct: 506 IQVRNMKNKDERMKIMGEVLNGIKILKLFAWEPSFEKRINEIRACELKDLLKFSYLQSVS 565
Query: 553 SFILNSIPXXXXXXSFGTFTLLGGD--LTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNA 610
F+ P SF + L+ + L +AFTS+SLF VLRFP+ MLP +LS +V
Sbjct: 566 IFVFTCAPFLVSLASFAVYVLVDENNVLDAQKAFTSISLFNVLRFPMAMLPLVLSSMVQT 625
Query: 611 NVSLQRXXXXXXXXXRILMXXXXXXXXXXAVSIKNGNFSWDSK-SPTLSNINLDIPVGSL 669
NVS +R AV F+W+ + + ++ LDI GSL
Sbjct: 626 NVSKERLERYLGGEDLDTSAIHHDSIPGSAVRFTEATFTWEHDGNAVIRDVTLDIKPGSL 685
Query: 670 VAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISWIFNATLRKNILFGSEF 729
VA+VG G GK+SL+SAMLGE+ +K + I+G++AYVPQ +WI NATL+ NILFGSE
Sbjct: 686 VAVVGAVGSGKSSLISAMLGEMENIK-GHINIQGSLAYVPQQAWIQNATLKDNILFGSEL 744
Query: 730 DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN 781
D A+Y K + AL DL+LLP D TEIGE+G+N+SGGQKQRVS+ARAV+N
Sbjct: 745 DEARYQKVIKACALLPDLELLPAGDQTEIGEKGINLSGGQKQRVSLARAVYN 796
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| UNIPROTKB|J9NY13 ABCC3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 799 (286.3 bits), Expect = 5.9e-158, Sum P(4) = 5.9e-158
Identities = 174/478 (36%), Positives = 272/478 (56%)
Query: 309 ESQRSKPWLLRALNNSFGGRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGD-PAWIGY 367
+ + +P L AL +FG + FK+ DL F+ P LL+ L++ + P W G+
Sbjct: 286 QPRSQQPSFLWALLATFGPSILISMCFKVVQDLLSFINPQLLSILIRFISNPTAPTWWGF 345
Query: 368 IYAFLIFVGVSFGVLTEAQYFQNVWRVGFRLRSTLVAAIFRKTLRLTHEARKGFPSGKVT 427
+ A L+F+ L QYF ++ + RLR+ + I+RK L +T+ A++ G++
Sbjct: 346 LVAGLMFLCSMAQTLVLHQYFHCIFEMALRLRTAITGVIYRKALVITNSAKRESTVGEIV 405
Query: 428 NMITTDANALQQISQQLHGLWSAPFRITLSMVLLYQQXXXXXXXXXXXXXXXXXXQTFII 487
N+++ DA ++ L+ +WSAP +I L++ L+Q +
Sbjct: 406 NLMSVDAQRFMDLAPFLNLVWSAPLQIILAIYFLWQNLGPSILAGVAFMVLLIPLNGAVA 465
Query: 488 SKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQF 547
KMR E +++ D R+ L +EIL + +K YAWE SF +V+ IR+DEL RK+ +
Sbjct: 466 VKMRAFQVEQMKFKDSRIKLMSEILGGIKVLKLYAWEPSFLEKVEGIREDELRLLRKSAY 525
Query: 548 LSAFNSFILNSIPXXXXXXSFGTFTLLGGD--LTPARAFTSLSLFAVLRFPLNMLPNLLS 605
L A ++F P + G + + + L +AF S+SLF +L+ PLNMLP L+S
Sbjct: 526 LQAISTFTWVCTPFLVTLTTLGVYVSVDQNNVLDAEKAFVSVSLFNLLKIPLNMLPQLIS 585
Query: 606 QVVNANVSLQRXXXXXXXXXRILMXXXXXXXX-XXAVSIKNGNFSW-DSKSPTLSNINLD 663
++ +VSL+R L AV+I NG F+W PTL ++++
Sbjct: 586 NLIQTSVSLKRIQHFLSQDELDLQCVERKTITPGYAVTIDNGTFTWAPDLPPTLHSLDIQ 645
Query: 664 IPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISWIFNATLRKNI 723
+P G+LVA+VG G GK+SLVSA+LGE+ L + +V ++G+VAYVPQ +WI N TL++NI
Sbjct: 646 VPKGALVAVVGPVGCGKSSLVSALLGEMEKL-EGTVCVKGSVAYVPQGAWIQNCTLQENI 704
Query: 724 LFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN 781
LFG DP +Y + + AL DL++LP D TEIGE+G+N+SGGQ+QRVS+ARAV++
Sbjct: 705 LFGQALDPKRYQQALKTCALLADLEMLPGGDQTEIGEKGINLSGGQRQRVSLARAVYS 762
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q9C8H0 | AB12C_ARATH | 3, ., 6, ., 3, ., 4, 4 | 0.7561 | 0.9700 | 0.8454 | yes | no |
| Q9C8H1 | AB11C_ARATH | 3, ., 6, ., 3, ., 4, 4 | 0.7176 | 0.9700 | 0.8454 | no | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| gw1.IV.2236.1 | multidrug resistance protein ABC transporter family (1607 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1303 | |||
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 0.0 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 0.0 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 0.0 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 1e-109 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 7e-80 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 3e-70 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 3e-61 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 6e-46 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 9e-45 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 2e-40 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 1e-39 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 2e-39 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 2e-39 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 4e-39 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 8e-38 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 2e-35 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 1e-33 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 6e-33 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 2e-32 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 9e-32 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 5e-30 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 8e-30 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 3e-28 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 5e-28 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 8e-28 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 1e-27 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 2e-27 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 1e-26 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 2e-26 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 1e-25 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 1e-25 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 2e-25 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 3e-25 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-24 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 2e-24 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 2e-24 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 2e-23 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 3e-23 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 1e-21 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 1e-21 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 6e-21 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 7e-20 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 2e-19 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 6e-19 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 2e-18 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 2e-18 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 3e-18 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 6e-18 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 1e-17 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 2e-17 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 2e-17 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 3e-17 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 4e-17 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 8e-17 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 4e-16 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 4e-16 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 1e-15 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 1e-15 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 1e-15 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 3e-15 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 4e-15 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 4e-15 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 9e-15 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 1e-14 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 2e-14 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 5e-14 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 5e-14 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 5e-14 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 1e-13 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 2e-13 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 3e-13 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 6e-13 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 8e-13 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 1e-12 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 2e-12 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 4e-12 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 4e-12 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 5e-12 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 5e-12 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 6e-12 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 7e-12 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 8e-12 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 1e-11 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 1e-11 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 2e-11 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 2e-11 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 2e-11 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 2e-11 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 4e-11 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 6e-11 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 1e-10 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 1e-10 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 2e-10 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 3e-10 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 4e-10 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 5e-10 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 6e-10 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 6e-10 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-09 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 1e-09 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 1e-09 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 1e-09 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 1e-09 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 2e-09 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 2e-09 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 2e-09 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 2e-09 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 3e-09 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 3e-09 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 3e-09 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 3e-09 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 4e-09 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 5e-09 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 5e-09 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 6e-09 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 6e-09 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 7e-09 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 8e-09 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 8e-09 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 1e-08 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 1e-08 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 2e-08 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 3e-08 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 3e-08 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 3e-08 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 4e-08 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 4e-08 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 4e-08 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 4e-08 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 5e-08 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 8e-08 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 9e-08 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 9e-08 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 1e-07 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 1e-07 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 1e-07 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 1e-07 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 1e-07 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 2e-07 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 2e-07 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 2e-07 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 3e-07 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 3e-07 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 3e-07 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 3e-07 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 4e-07 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 4e-07 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 4e-07 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 4e-07 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 5e-07 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 5e-07 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 5e-07 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 6e-07 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 6e-07 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 7e-07 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 8e-07 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 9e-07 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 1e-06 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 1e-06 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 1e-06 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 1e-06 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 1e-06 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 1e-06 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 2e-06 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 2e-06 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 2e-06 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 2e-06 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 2e-06 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 2e-06 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 3e-06 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 3e-06 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 3e-06 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 3e-06 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 4e-06 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 4e-06 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 4e-06 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 4e-06 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 4e-06 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 4e-06 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 5e-06 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 5e-06 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 6e-06 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 7e-06 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 7e-06 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 7e-06 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 8e-06 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 8e-06 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 9e-06 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 9e-06 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 9e-06 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 1e-05 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 1e-05 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 1e-05 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-05 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 1e-05 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 1e-05 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 1e-05 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 1e-05 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 1e-05 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 2e-05 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 2e-05 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 2e-05 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 2e-05 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 2e-05 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 2e-05 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 2e-05 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 2e-05 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 2e-05 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 3e-05 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 3e-05 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 3e-05 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 3e-05 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 3e-05 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 3e-05 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 3e-05 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 3e-05 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 3e-05 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 4e-05 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 4e-05 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 4e-05 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 4e-05 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 4e-05 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 4e-05 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 5e-05 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 5e-05 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 5e-05 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 5e-05 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 5e-05 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 5e-05 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 5e-05 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 6e-05 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 6e-05 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 7e-05 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 7e-05 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 7e-05 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 8e-05 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 8e-05 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 8e-05 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 8e-05 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 9e-05 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 9e-05 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 9e-05 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 9e-05 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 1e-04 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 1e-04 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 1e-04 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 1e-04 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 1e-04 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 2e-04 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 2e-04 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 2e-04 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 2e-04 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 2e-04 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-04 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 2e-04 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 2e-04 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 2e-04 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-04 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 3e-04 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 3e-04 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 3e-04 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 3e-04 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 3e-04 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 3e-04 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 3e-04 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 3e-04 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 3e-04 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 4e-04 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 4e-04 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 4e-04 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 4e-04 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 4e-04 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 4e-04 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 4e-04 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 4e-04 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 5e-04 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 5e-04 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 5e-04 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 5e-04 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 6e-04 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 6e-04 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 6e-04 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 6e-04 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 6e-04 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 7e-04 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 7e-04 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 7e-04 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 7e-04 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 7e-04 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 8e-04 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 9e-04 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 0.001 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 0.001 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 0.001 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 0.001 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 0.001 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 0.001 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 0.001 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 0.001 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 0.001 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 0.001 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 0.001 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 0.001 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 0.001 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 0.001 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| cd11383 | 140 | cd11383, YfjP, YfjP GTPase | 0.001 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 0.001 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 0.002 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 0.002 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 0.002 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 0.002 | |
| pfam01926 | 117 | pfam01926, MMR_HSR1, 50S ribosome-binding GTPase | 0.002 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 0.002 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 0.002 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 0.002 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 0.002 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 0.003 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 0.003 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 0.003 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 0.003 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 0.003 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 0.003 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 0.003 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 0.003 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 0.003 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 0.004 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 0.004 | |
| COG3596 | 296 | COG3596, COG3596, Predicted GTPase [General functi | 0.004 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 0.004 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 2483 bits (6438), Expect = 0.0
Identities = 1008/1300 (77%), Positives = 1113/1300 (85%), Gaps = 31/1300 (2%)
Query: 27 MASGPLDWYCRPVANGTWAKTVDSTFGAYTTCAVDSLVISISHSVLLGLCIFRIWLMNKN 86
M PLDWYCRPV NG WAK VD+ FGAYT CA DSLVI+ISH VLLGLC++RIWL+ K+
Sbjct: 1 MGFEPLDWYCRPVPNGVWAKKVDNAFGAYTPCATDSLVINISHLVLLGLCLYRIWLIKKD 60
Query: 87 SKARRYRLSSNCYNYMLGLLACYCTAEPLLRLVMGISIFNLDGETSFAPFEMVSLIIEAL 146
K +R+ L S YNY L LLA YCTAEPL RLVMGIS+ NLDG+TS PFE+VSLI+EAL
Sbjct: 61 HKVQRFCLRSKWYNYFLALLAAYCTAEPLFRLVMGISVLNLDGQTSLPPFEIVSLIVEAL 120
Query: 147 AWCSMLIMICLETKFYIREFRWYVRFGVIYVLVGDAVILNLIIPMRDYYSRITLYLYISM 206
WCSML+MI +ETK YIREFRWYVRF VIYVLVGDAV+LNL++ +++YYS LYLYIS
Sbjct: 121 TWCSMLVMIGVETKIYIREFRWYVRFAVIYVLVGDAVMLNLVLSVKEYYSSFVLYLYISE 180
Query: 207 VFCQALFGILILVYIPNLDPYPGYTIMQPEFVDNAEYEALPGGEHVCPERNASILSRTSF 266
V Q LFGIL+LVY PNLDPYPGYT + E VD+ EYE LPGGE +CPER+A+I SR F
Sbjct: 181 VAAQVLFGILLLVYFPNLDPYPGYTPIGSESVDDYEYEELPGGEQICPERHANIFSRIFF 240
Query: 267 GWMTPLLQLGYKKPITEKDVWKLDTWDQTEILIEKFHRCWIEESQRSKPWLLRALNNSFG 326
GWMTPL+QLGYK+P+TEKDVWKLDTWDQTE L F +CW EE ++ KPWLLRALNNS G
Sbjct: 241 GWMTPLMQLGYKRPLTEKDVWKLDTWDQTETLYRSFQKCWDEELKKPKPWLLRALNNSLG 300
Query: 327 GRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPAWIGYIYAFLIFVGVSFGVLTEAQ 386
GRFWLGG FKIGNDLSQFVGP+LLN LL+SMQ G+PAWIGYIYAF IFVGV GVL EAQ
Sbjct: 301 GRFWLGGFFKIGNDLSQFVGPLLLNLLLESMQNGEPAWIGYIYAFSIFVGVVLGVLCEAQ 360
Query: 387 YFQNVWRVGFRLRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQLHG 446
YFQNV RVGFRLRSTLVAA+FRK+LRLTHE RK F SGK+TN++TTDA ALQQI QQLH
Sbjct: 361 YFQNVMRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQICQQLHT 420
Query: 447 LWSAPFRITLSMVLLYQQLGVASLLGSLMLVLMVPLQTFIISKMRKLTKEGLQWTDRRVS 506
LWSAPFRI ++MVLLYQQLGVASL+GSLMLVLM P+QTFIISKM+KLTKEGLQ TD+R+
Sbjct: 421 LWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIG 480
Query: 507 LTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSIPVVVTVV 566
L NE+LAAMDTVKCYAWE SFQS+VQ++RDDELSWFRKAQ LSAFNSFILNSIPV+VTVV
Sbjct: 481 LMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIPVLVTVV 540
Query: 567 SFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEER 626
SFG FTLLGGDLTPARAFTSLSLFAVLRFPL MLPNL++Q VNANVSL+RLEELLLAEER
Sbjct: 541 SFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEER 600
Query: 627 ILMPNPPLEPELPAVSIKNGNFSWDSKS--PTLSNINLDIPVGSLVAIVGGTGEGKTSLV 684
+L+PNPPLEP LPA+SIKNG FSWDSK+ PTLSNINLD+PVGSLVAIVG TGEGKTSL+
Sbjct: 601 VLLPNPPLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLI 660
Query: 685 SAMLGELPPLKDASVVIRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQ 744
SAMLGELPP DASVVIRGTVAYVPQ+SWIFNAT+R NILFGS FDP +Y + +DV+ALQ
Sbjct: 661 SAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQ 720
Query: 745 HDLDLLPDRDLTEIGERGVNISGGQKQRVSMARA------------------------VF 780
HDLDLLP DLTEIGERGVNISGGQKQRVSMARA VF
Sbjct: 721 HDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVF 780
Query: 781 NSCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLMENA 840
+ CIK+ELRGKTR+LVTNQLHFL VDRIILV EGMIKEEG++EELS +G LFQKLMENA
Sbjct: 781 DKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNNGPLFQKLMENA 840
Query: 841 GKMEEMEEREEKDDSINSNQEVSKPVANRAVQVNEFPKNESYTKKGKRGRSVLVKQEERE 900
GKMEE E +Q SKPVAN N K+ S KK K G+SVL+KQEERE
Sbjct: 841 GKMEEYVEEN---GEEEDDQTSSKPVANG--NANNLKKDSSSKKKSKEGKSVLIKQEERE 895
Query: 901 TGIVSGSVLTRYKNALGGPWVIMILFACYLSTEVLRISSSTWLSFWTDQSTSKNYNPGFY 960
TG+VS VL RYKNALGG WV+MILF CY+ TEV R+SSSTWLS WTDQ T K + P FY
Sbjct: 896 TGVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPKTHGPLFY 955
Query: 961 IAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILRAPMLFFHTNPIGRVINR 1020
IY +L+FGQV VTLLNSYWLI+SSL AAKRLHD+ML SILRAPM FFHTNP+GR+INR
Sbjct: 956 NLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINR 1015
Query: 1021 FSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLILFYAAYLYYQS 1080
F++DLGDIDRNVA FVNMF+ Q++QLLSTFVLIGIVSTISLWAIMPLL+LFY AYLYYQS
Sbjct: 1016 FAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISLWAIMPLLVLFYGAYLYYQS 1075
Query: 1081 TAREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSS 1140
TAREVKRLDSITRSPVYAQFGEALNGLSTIRA+KAYDRMA+ING+SMDNNIRFTL N SS
Sbjct: 1076 TAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSS 1135
Query: 1141 NRWLTIRLETLGGIMIWLIATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQ 1200
NRWL IRLETLGG+MIWL A+FAVMQNGRAENQ AFASTMGLLLSY LNIT+LL+ VLR
Sbjct: 1136 NRWLAIRLETLGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRL 1195
Query: 1201 ASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSGSIKFEDVVLRYRPELPPVL 1260
AS AENSLNAVERVGTYIDLPSEAP ++E+NRPPP WPSSGSIKFEDVVLRYRPELPPVL
Sbjct: 1196 ASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVL 1255
Query: 1261 HGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
HGLSF +SPSEKVGIVGRTGAGKSSMLNALFRIVELERG
Sbjct: 1256 HGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGR 1295
|
Length = 1622 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 2226 bits (5769), Expect = 0.0
Identities = 978/1300 (75%), Positives = 1115/1300 (85%), Gaps = 34/1300 (2%)
Query: 27 MASGPLDWYCRPVANGTWAKTVDSTFGAYTTCAVDSLVISISHSVLLGLCIFRIWLMNKN 86
M L+WYC+P+A G W KTVD FGAYT CA+DSLV+ +SHSVLLGLC +RIW++ N
Sbjct: 1 MGFEALNWYCKPIAEGFWEKTVDGAFGAYTPCAIDSLVMIVSHSVLLGLCFYRIWIILDN 60
Query: 87 SKARRYRLSSNCYNYMLGLLACYCTAEPLLRLVMGISIFNLDGETSFAPFEMVSLIIEAL 146
+KA+ Y L YN +LG+LACYC EP+LRLVMGIS+F++D ET PFE+ SL++EA
Sbjct: 61 AKAQIYVLRKKYYNCVLGILACYCVVEPVLRLVMGISLFDMDEETDLPPFEVASLMVEAF 120
Query: 147 AWCSMLIMICLETKFYIREFRWYVRFGVIYVLVGDAVILNLIIPMRDYYSRITLYLYISM 206
AW SML++I LETK Y++EFRWYVRFGV+YVLV DAV+L+L++P+++ +R LYL IS
Sbjct: 121 AWFSMLVLIGLETKQYVKEFRWYVRFGVVYVLVADAVLLDLVLPLKNSINRTALYLCISS 180
Query: 207 VFCQALFGILILVYIPNLDPYPGYTIMQPEFVDNAEYEALPGGEHVCPERNASILSRTSF 266
CQALFGIL+LVYIP LDPYPGY I+ E +DN EY+AL GGE++CPER ASI SR F
Sbjct: 181 RCCQALFGILLLVYIPELDPYPGYHILNNESLDNVEYDALRGGENICPERYASIFSRIYF 240
Query: 267 GWMTPLLQLGYKKPITEKDVWKLDTWDQTEILIEKFHRCWIEESQRSKPWLLRALNNSFG 326
WMTPL+QLGY+KPITEKDVW+LD WDQTE LI++F RCW EES+R KPWLLRALNNS G
Sbjct: 241 SWMTPLMQLGYRKPITEKDVWQLDQWDQTETLIKRFQRCWTEESRRPKPWLLRALNNSLG 300
Query: 327 GRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPAWIGYIYAFLIFVGVSFGVLTEAQ 386
GRFWLGG+FKIG+DLSQFVGPV+L+HLLQSMQ GDPAW+GY+YAFLIF GV+FGVL E+Q
Sbjct: 301 GRFWLGGIFKIGHDLSQFVGPVILSHLLQSMQEGDPAWVGYVYAFLIFFGVTFGVLCESQ 360
Query: 387 YFQNVWRVGFRLRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQLHG 446
YFQNV RVGFRLRSTLVAAIF K+LRLTHEARK F SGKVTNMITTDANALQQI++QLHG
Sbjct: 361 YFQNVGRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIAEQLHG 420
Query: 447 LWSAPFRITLSMVLLYQQLGVASLLGSLMLVLMVPLQTFIISKMRKLTKEGLQWTDRRVS 506
LWSAPFRI +SMVLLYQQLGVASL GSL+L L++PLQT I+ KMRKLTKEGLQWTD+RV
Sbjct: 421 LWSAPFRIIVSMVLLYQQLGVASLFGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVG 480
Query: 507 LTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSIPVVVTVV 566
+ NEILA+MDTVKCYAWEKSF+SR+Q IR++ELSWFRKAQ LSAFNSFILNSIPVVVT+V
Sbjct: 481 IINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIPVVVTLV 540
Query: 567 SFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEER 626
SFG F LLGGDLTPARAFTSLSLFAVLR PLNMLPNLLSQVVNANVSLQR+EELLL+EER
Sbjct: 541 SFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEER 600
Query: 627 ILMPNPPLEPELPAVSIKNGNFSWDSKS--PTLSNINLDIPVGSLVAIVGGTGEGKTSLV 684
IL NPPL+P PA+SIKNG FSWDSK+ PTLS+INL+IPVGSLVAIVGGTGEGKTSL+
Sbjct: 601 ILAQNPPLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLI 660
Query: 685 SAMLGELPPLKDASVVIRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQ 744
SAMLGEL + +SVVIRG+VAYVPQ+SWIFNAT+R+NILFGS+F+ +YW+ +DV+ALQ
Sbjct: 661 SAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQ 720
Query: 745 HDLDLLPDRDLTEIGERGVNISGGQKQRVSMARA------------------------VF 780
HDLDLLP RDLTEIGERGVNISGGQKQRVSMARA VF
Sbjct: 721 HDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVF 780
Query: 781 NSCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLMENA 840
+SC+K+EL+GKTR+LVTNQLHFLP +DRIILVSEGMIKEEG+F ELSK G LF+KLMENA
Sbjct: 781 DSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKSGSLFKKLMENA 840
Query: 841 GKMEEMEEREEKDDSINSNQEVSKPVANRAVQVNEFPKNESYTKKGKRGRSVLVKQEERE 900
GKM+ +E D++I V ++ +N TK+GKRGRSVLVKQEERE
Sbjct: 841 GKMDATQEVNTNDENILK--------LGPTVTIDVSERNLGSTKQGKRGRSVLVKQEERE 892
Query: 901 TGIVSGSVLTRYKNALGGPWVIMILFACYLSTEVLRISSSTWLSFWTDQSTSKNYNPGFY 960
TGI+S +VL RY A+GG WV+MIL CYL+TEVLR+SSSTWLS WTDQST K+Y+PGFY
Sbjct: 893 TGIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVLRVSSSTWLSIWTDQSTPKSYSPGFY 952
Query: 961 IAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILRAPMLFFHTNPIGRVINR 1020
I +Y +L FGQV VT NS+WLI SSL AAKRLHD+MLNSILRAPMLFFHTNP GRVINR
Sbjct: 953 IVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINR 1012
Query: 1021 FSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLILFYAAYLYYQS 1080
FS+D+GDIDRNVA+ +NMFMNQLWQLLSTF LIG VSTISLWAIMPLLILFYAAYLYYQS
Sbjct: 1013 FSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTISLWAIMPLLILFYAAYLYYQS 1072
Query: 1081 TAREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSS 1140
T+REV+RLDS+TRSP+YAQFGEALNGLS+IRA+KAYDRMAKINGKSMDNNIRFTLANTSS
Sbjct: 1073 TSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSS 1132
Query: 1141 NRWLTIRLETLGGIMIWLIATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQ 1200
NRWLTIRLETLGG+MIWL ATFAV++NG AENQ FASTMGLLLSYTLNIT LLSGVLRQ
Sbjct: 1133 NRWLTIRLETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQ 1192
Query: 1201 ASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSGSIKFEDVVLRYRPELPPVL 1260
AS+AENSLN+VERVG YIDLPSEA ++E+NRP WPS GSIKFEDV LRYRP LPPVL
Sbjct: 1193 ASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVL 1252
Query: 1261 HGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
HGLSF VSPSEKVG+VGRTGAGKSSMLNALFRIVELE+G
Sbjct: 1253 HGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGR 1292
|
Length = 1495 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 719 bits (1858), Expect = 0.0
Identities = 396/1212 (32%), Positives = 633/1212 (52%), Gaps = 131/1212 (10%)
Query: 193 DYYSRITLYLYISMVFCQALFGILILVYIPNLDPYPGYTIMQPEFVDNAEYEALPGGEHV 252
D + T Y+Y ++V Q L+L + P T P +
Sbjct: 162 DPFRDTTFYIYFALVLSQ-----LVLSCFSDKSPLFSETNHDP---------------NP 201
Query: 253 CPERNASILSRTSFGWMTPLLQLGYKKPITEKDVWKLDTWDQTEILIEKFHRCWIEESQR 312
CPE +AS LSR +F W+T + GY++P+ E D+W L+ D +E+++ W +E ++
Sbjct: 202 CPESSASFLSRITFWWITGMAVYGYRQPLEESDLWSLNKEDTSEMVVPVLVENWKKECKK 261
Query: 313 S-----------------------------------------KPWLLRALNNSFGGRFWL 331
+ KP L + L +FG F +
Sbjct: 262 TRKQPVSAVYGKKDPSKPKGSSQLDANEEVEALIVKSPHKPRKPSLFKVLYKTFGPYFLM 321
Query: 332 GGLFKIGNDLSQFVGPVLLNHLLQSMQ-RGDPAWIGYIYAFLIFVGVSFGVLTEAQYFQN 390
FK +DL F+GP +L+ L++ + P W GY Y L+FV L QYF
Sbjct: 322 SFCFKAIHDLMMFIGPQILSLLIRFVNDPMAPDWQGYFYTGLLFVCACLQTLILHQYFHI 381
Query: 391 VWRVGFRLRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQLHGLWSA 450
+ G R+++ ++ A++RK L +T+ ARK G++ N+++ DA ++ ++ +WSA
Sbjct: 382 CFVSGMRIKTAVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLATYINMIWSA 441
Query: 451 PFRITLSMVLLYQQLGVASLLGSLMLVLMVPLQTFIISKMRKLTKEGLQWTDRRVSLTNE 510
P ++ L++ L+ LG + L G ++VLMVPL + K + ++ D R+ L NE
Sbjct: 442 PLQVILALYFLWLNLGPSVLAGVAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNE 501
Query: 511 ILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSIPVVVTVVSFGT 570
IL + +K YAWE +F +V+ IR +EL +K+ +L A +F P +V +++F
Sbjct: 502 ILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTPFLVALITFAV 561
Query: 571 FTLLGGD--LTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERIL 628
+ + + L +AF SL+LF +LRFPLN+LP ++S +V A+VSL+RL L EE L
Sbjct: 562 YVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEE--L 619
Query: 629 MPNP----PLEP-ELPAVSIKNGNFSW-DSKSPTLSNINLDIPVGSLVAIVGGTGEGKTS 682
P+ ++P E ++++ N F+W PTL+ I IP G+LVA+VG G GK+S
Sbjct: 620 EPDSIERRTIKPGEGNSITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSS 679
Query: 683 LVSAMLGELPPLKDASVVIRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSA 742
L+SA+L E+ + + V ++G+VAYVPQ +WI N +LR+NILFG + Y + ++ A
Sbjct: 680 LLSALLAEMDKV-EGHVHMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACA 738
Query: 743 LQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAV----------------------- 779
L DL++LP D TEIGE+GVN+SGGQKQRVS+ARAV
Sbjct: 739 LLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKH 798
Query: 780 -FNSCIKEE--LRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKL 836
F I E L+ KTRILVT+ + +LP VD II++S G I E GS++EL + F +
Sbjct: 799 IFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEF 858
Query: 837 MENAGKMEEMEEREEK-DDSINSNQEVSKPVANRAVQVNEFPK------NESYTKKGKRG 889
+ E+ E+ ++ + +K + N + + K + S + G +
Sbjct: 859 LRTYAPDEQQGHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGDQS 918
Query: 890 RSV-----------------LVKQEERETGIVSGSVLTRYKNALGGPWVIMILFACYLST 932
R L++ ++ +TG V SV Y A+G + +F ++
Sbjct: 919 RHHGSSAELQKAEAKEETWKLMEADKAQTGQVELSVYWDYMKAIGLFITFLSIF-LFVCN 977
Query: 933 EVLRISSSTWLSFWTDQS--TSKNYNPGFYIAIYTILAFGQVTVTLLNSYWLIISSLRAA 990
V ++S+ WLS WTD N +++Y L Q S + I ++A+
Sbjct: 978 HVSALASNYWLSLWTDDPMVNGTQNNTSLRLSVYGALGILQGFAVFGYSMAVSIGGIQAS 1037
Query: 991 KRLHDSMLNSILRAPMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTF 1050
+ LH +L++ LR+PM FF P G ++NRFS++L +D + + MFM L+ ++
Sbjct: 1038 RVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGAL 1097
Query: 1051 VLIGIVSTISLWAIMPLLILFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTI 1110
++I + + I+ I PL +L++ +Y +++R++KRL+S++RSPVY+ F E L G+S I
Sbjct: 1098 IVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVI 1157
Query: 1111 RAFKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGIMIWLIATFAVMQNGRA 1170
RAF+ +R + +D N + + +NRWL +RLE +G ++ A FAV+ R
Sbjct: 1158 RAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFAALFAVI--SRH 1215
Query: 1171 ENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAPGMVES 1230
A +GL +SY+L +T L+ ++R +S E ++ AVER+ Y + EAP ++
Sbjct: 1216 SLS---AGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQE 1272
Query: 1231 NRPPPAWPSSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNAL 1290
PP WP G ++F + LRYR +L VL ++ T+ EKVGIVGRTGAGKSS+ L
Sbjct: 1273 TAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGL 1332
Query: 1291 FRIVELERGENI 1302
FRI E GE I
Sbjct: 1333 FRINESAEGEII 1344
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 377 bits (969), Expect = e-109
Identities = 222/706 (31%), Positives = 350/706 (49%), Gaps = 77/706 (10%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISWIFN 716
L ++++ +P G L ++G TG GK++L+ ++L + + + V ++AYVPQ +WI N
Sbjct: 676 LRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE-ISEGRVWAERSIAYVPQQAWIMN 734
Query: 717 ATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMA 776
AT+R NILF E D A+ V VS L+ DL L TEIGE+GVN+SGGQK RVS+A
Sbjct: 735 ATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLA 794
Query: 777 RAVF------------------------NSCIKEELRGKTRILVTNQLHFLPHVDRIILV 812
RAV+ C L GKTR+L T+Q+H +P D ++ +
Sbjct: 795 RAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVAL 854
Query: 813 SEGMIKEEGS---FEELSKHGRLFQKLMENAGKMEEMEEREEKDDSINSNQEVSKPVANR 869
+G ++ GS F S + L +L EN E + E + +
Sbjct: 855 GDGRVEFSGSSADFMRTSLYATLAAELKENKDSKEGDADAEV-AEVDAAPGGAVDHEPPV 913
Query: 870 AVQVNEFPKNESYTKKGKRGRSVLVKQEERETGIVSGSVLTRYKNALGGPWVIMILFACY 929
A Q + GR L+ +EE+ +G V S Y GG + A +
Sbjct: 914 AKQEGNAEGGDGAALDAAAGR--LMTREEKASGSVPWSTYVAYLRFCGGLHAAGFVLATF 971
Query: 930 LSTEVLRISSSTWLSFWTDQSTSKNYNPGFYIAIYTILAFGQVTVTLLNSYWLIISSLR- 988
TE++ +SS WLS W+ +S + Y+ + +L G +V L ++L ++R
Sbjct: 972 AVTELVTVSSGVWLSMWSTRSFKLSAATYLYVYLGIVLL-GTFSVPL--RFFLSYEAMRR 1028
Query: 989 AAKRLHDSMLNSILRAPMLFFHTNPIGRVINRFSRDLGDIDRNVA-SFVNMFMNQLWQLL 1047
++ +H +L S+ R M FF T P+GR++NRFSRD+ +D + S++ + + L+ +
Sbjct: 1029 GSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYL-LQCLFSIC 1087
Query: 1048 STFVLIGIVSTISLWAIMPLLILFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGL 1107
S+ ++ L A++P L+Y +Y S RE++R+ S+ +SPV+ EAL G
Sbjct: 1088 SSILVTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGS 1147
Query: 1108 STIRAFKAYDRMAKINGKSMDNNIRFTLANTSS------NRWLTIRLETLGGIMIWLIAT 1161
+TI AY + + +++ R + + S NRWL +R+E L I++ +IA
Sbjct: 1148 ATI---TAYGKAHLVMQEALR---RLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIAL 1201
Query: 1162 FAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYID-L 1220
V+ + L L+ + T L+ ++RQ + E +N+VER+ Y D +
Sbjct: 1202 IGVIGTMLRATSQEIG-LVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEV 1260
Query: 1221 PSEA--------------PGM---------VESNRPPPAWP---SSGSIKFEDVVLRYRP 1254
P E GM +E P A P +GS+ FE V +RYR
Sbjct: 1261 PHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYRE 1320
Query: 1255 ELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
LP VL G+SF ++P EKVGIVGRTG+GKS++L R+VE+ GE
Sbjct: 1321 GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGE 1366
|
Length = 1560 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 260 bits (668), Expect = 7e-80
Identities = 99/204 (48%), Positives = 132/204 (64%), Gaps = 30/204 (14%)
Query: 641 VSIKNGNFSWDSK----SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKD 696
+S+++ +F+WDS S TL +INL++P G LVAIVG G GK+SL+SA+LGEL L
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 697 ASVVIRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLT 756
SV + G++AYV Q WI N T+R+NILFG FD +Y K + AL+ DL++LPD DLT
Sbjct: 61 -SVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLT 119
Query: 757 EIGERGVNISGGQKQRVSMARAV------------------------FNSCIKEELR-GK 791
EIGE+G+N+SGGQKQR+S+ARAV F +CI L K
Sbjct: 120 EIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNK 179
Query: 792 TRILVTNQLHFLPHVDRIILVSEG 815
TRILVT+QL LPH D+I+++ G
Sbjct: 180 TRILVTHQLQLLPHADQIVVLDNG 203
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 259 bits (662), Expect = 3e-70
Identities = 182/645 (28%), Positives = 308/645 (47%), Gaps = 87/645 (13%)
Query: 254 PERNASILSRTSFGWMTPLLQLGYKKPITEKDVWKLDTWDQTEILIEKFHRCWIEE--SQ 311
P A+ LS+ F W P+L+ GY++ + D++++ ++D + L E+ R W E S
Sbjct: 5 PVEKANFLSKLFFWWTRPILRKGYRQKLELSDIYQIPSFDSADNLSERLEREWDRELASA 64
Query: 312 RSKPWLLRALNNSFGGRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDP-----AWIG 366
+ P LL AL F RF G+ + ++ V P+LL ++ S DP I
Sbjct: 65 KKNPKLLNALRRCFFWRFVFYGILLYFGEATKAVQPLLLGRIIASY---DPFNAPEREIA 121
Query: 367 YIYAF---LIFVGVSFGVLTEAQYFQNVWRVGFRLRSTLVAAIFRKTLRLTHEARKGFPS 423
Y A L+F+ V +L A + + +G ++R L + I++KTL+L+ +
Sbjct: 122 YYLALGLCLLFI-VRTLLLHPAIF--GLHHLGMQMRIALFSLIYKKTLKLSSRVLDKIST 178
Query: 424 GKVTNMITTDANALQQISQQLHGLWSAPFRITLSMVLLYQQLGVASLLGSLMLVLMVPLQ 483
G++ ++++ + N + H +W AP ++ L M L+++ L V G L+L+ Q
Sbjct: 179 GQLVSLLSNNLNKFDEGLALAHFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQ 238
Query: 484 TFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFR 543
+ KM + R+++T+EI+ + +VK Y WE++ + +++IR DEL R
Sbjct: 239 ACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTR 298
Query: 544 KAQFLSAFNS--FILNSIPVVVTVVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLN-ML 600
K +L F S F + VV V + L+ G + R FT++S VLR +
Sbjct: 299 KIAYLRYFYSSAFFFSGFFVVFLSVV--PYALIKG-IILRRIFTTISYCIVLRMTVTRQF 355
Query: 601 PNLLSQVVNANVSLQRLEELLLAEERILMPNPPLEPELPA--VSIKNGNFSWDSK----- 653
P + ++ ++ ++++ L EE LE L V + N SWD
Sbjct: 356 PGAIQTWYDSLGAITKIQDFLCKEE-----YKTLEYNLTTTEVEMVNVTASWDEGIGELF 410
Query: 654 ----------------------------SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVS 685
+P L NI+ + G L+A+ G TG GK+SL+
Sbjct: 411 EKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLM 470
Query: 686 AMLGELPPLKDASVVIRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQH 745
++GEL P + + G +++ PQ SWI T++ NI+FG +D +Y + L+
Sbjct: 471 MIMGELEP-SEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEE 529
Query: 746 DLDLLPDRDLTEIGERGVNISGGQKQRVSMARAV------------------------FN 781
D+ L P++D T +GE G+ +SGGQ+ R+S+ARAV F
Sbjct: 530 DIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFE 589
Query: 782 SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEEL 826
SC+ + + KTRILVT++L L D+I+L+ EG+ G+F EL
Sbjct: 590 SCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSEL 634
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 220 bits (562), Expect = 3e-61
Identities = 137/552 (24%), Positives = 259/552 (46%), Gaps = 45/552 (8%)
Query: 328 RFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPAWIGYIYAFLIFVGVSFGVLTEAQY 387
L L + + L + P+L+ ++ ++ D + + L+ + + GVL
Sbjct: 15 LLLLAILLLLLSALLSLLLPLLIGRIIDALL-ADLGELLELLLLLLLLALLGGVLR---A 70
Query: 388 FQNVW--RVGFRLRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQ-ISQQL 444
Q+ R+G ++ + L +F K LRL SG + + +T D A+ +S L
Sbjct: 71 LQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVL 130
Query: 445 HGLWSAPFRITLSMVLLYQQLGVASLLGSLMLVLMVPLQTFIISKMRKLTKEGLQWTDRR 504
++++ + S+VLL+ +L+ L+L L+ + + + K RKL++ +
Sbjct: 131 VLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVREALGEL 190
Query: 505 VSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSIPVVVT 564
+ E L+ + +K + E R + ++ +A L A + ++ + + T
Sbjct: 191 NARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGT 250
Query: 565 VV--SFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLL 622
V+ + G F +L G LT + L P+ L ++S + A+ + +RL ELL
Sbjct: 251 VLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLD 310
Query: 623 AEERILMPNPPLEPELPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTS 682
E + P PL+ + ++ +N +FS+ K P L +I+ I G VAIVG +G GK++
Sbjct: 311 EEPEVEDPPDPLKDTIGSIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKST 370
Query: 683 LVSAMLGELPP-----------LKDASV-VIRGTVAYVPQISWIFNATLRKNILFG-SEF 729
L+ +L P ++D S+ +R + V Q +F+ T+R+NI G +
Sbjct: 371 LIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDA 430
Query: 730 DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN-------- 781
+ + + ++ + LPD T +GERGVN+SGGQ+QR+++ARA+
Sbjct: 431 TDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILD 490
Query: 782 ---------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEEL 826
+K+ L+G+T +++ ++L + + DRII++ G I E G+ EEL
Sbjct: 491 EATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEEL 550
Query: 827 SKHGRLFQKLME 838
G L+ +L +
Sbjct: 551 LAKGGLYARLYQ 562
|
Length = 567 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 177 bits (451), Expect = 6e-46
Identities = 127/549 (23%), Positives = 241/549 (43%), Gaps = 59/549 (10%)
Query: 341 LSQFVGPVLLNHLLQS-MQRGDPAWIGYIYAFLIFVGVSFGVLTEAQYFQNVWRVGFRLR 399
L P+ ++ + + + + L+ + +L + + +G RL
Sbjct: 168 LLALATPLFSQIVIDKVLPDASRSTLTVLAIGLLLAALFEALLRLLRTYLIA-HLGKRLD 226
Query: 400 STLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQLHG-----LWSAPFRI 454
L FR LRL + + I + L+QI + L G + F +
Sbjct: 227 LELSGRFFRHLLRL----PLSYFEKRSVGEIISRVRELEQIREFLTGSILTLIIDLLFAL 282
Query: 455 TLSMVLLYQQLGVASLLGSLMLVLMVPLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAA 514
V+ + L+ + L V + +R+ T++ ++ + + S E +
Sbjct: 283 IFLAVMFLYSWKLT-LIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKG 341
Query: 515 MDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSIPVV--VTVVSFGTFT 572
++TVK A E F+S+ + +++ K + L+ + I + + + V ++ FG
Sbjct: 342 IETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAIL 401
Query: 573 LLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAE-----ERI 627
+L G+LT + L P+ L L + A V+L+RL ++L ++
Sbjct: 402 VLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKT 461
Query: 628 LMPNPPLEPELPAVSIKNGNFSWDSKSP-TLSNINLDIPVGSLVAIVGGTGEGKTSLVSA 686
L+ P L+ E + +N +F + P L +++L+IP G VAIVG +G GK++L+
Sbjct: 462 LIHLPKLQGE---IEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKL 518
Query: 687 MLGELPP-----------LKDASV-VIRGTVAYVPQISWIFNATLRKNILFGSEFDPAK- 733
+LG P L D + +R V YV Q ++F+ ++R+NI G+ +
Sbjct: 519 LLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEE 578
Query: 734 YWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAV-------------- 779
+ ++ ++ LP T +GE G N+SGGQ+QR+++ARA+
Sbjct: 579 IIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATS 638
Query: 780 ---------FNSCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHG 830
+ + L+G+T I++ ++L + DRII++ +G I E+GS EEL G
Sbjct: 639 ALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQG 698
Query: 831 RLFQKLMEN 839
L+ +L +
Sbjct: 699 GLYARLYQQ 707
|
Length = 709 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 161 bits (408), Expect = 9e-45
Identities = 86/218 (39%), Positives = 118/218 (54%), Gaps = 42/218 (19%)
Query: 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGEL--------- 691
V + NG FSW S TLSNIN+ IP G L IVG G GK+SL+ A+LGE+
Sbjct: 1 VQVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHW 60
Query: 692 -------PPLKDASVVIRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQ 744
P + R +VAY Q W+ NAT+ +NI FGS F+ +Y D +LQ
Sbjct: 61 SNKNESEPSFEATRSRNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQ 120
Query: 745 HDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFNSC--------------------- 783
D+DLLP D TEIGERG+N+SGGQ+QR+ +ARA++ +
Sbjct: 121 PDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLM 180
Query: 784 ---IKEELRG--KTRILVTNQLHFLPHVDRIILVSEGM 816
I + L+ +T +LVT++L +LPH D II + +G
Sbjct: 181 QEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 158 bits (401), Expect = 2e-40
Identities = 119/550 (21%), Positives = 220/550 (40%), Gaps = 86/550 (15%)
Query: 349 LLNHLLQSMQRGDPAWIGYIYAFLIFVGVSFGVLTEAQYFQNVWRVGFRLRSTLVAAIFR 408
+L L+ + + + + LI + + + + R ++R++L +
Sbjct: 26 ILTKLI--EGQLFQSLLPLLILLLIALVLRAFLAWLRERLGY--RAAAKVRASLRQLVLD 81
Query: 409 KTLRLTHEARKGFPSGKVTNMITTDANALQQ-----ISQQLHGLWSAPFRITLSMVLLYQ 463
K +L P+G + L+ + Q P I +++
Sbjct: 82 KLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAI-VPLLILIAIFFFNW 140
Query: 464 QLGVASLLGSLMLVLMVPLQTFII---SKMRKLTKEGLQWTD-RRVS-LTNEILAAMDTV 518
+ ++L+ + F+I + +++ Q++ R+S + L ++T+
Sbjct: 141 AAAL------ILLITAPLIPLFMILVGLAAKDASEK--QFSALARLSGHFLDRLRGLETL 192
Query: 519 KCYAWEKSFQSRVQSIRDDELSWFRKA-------QFLSAFNSFILN---SIPVVVTVVSF 568
+ + ++ + R+ + FRKA FLS S +L + + + V
Sbjct: 193 RAFGRTEATEERI----RKDSEDFRKATMSVLRIAFLS---SAVLEFFAYLSIALVAVYI 245
Query: 569 GTFTLLG-GDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAE-ER 626
G F LLG GDLT L L PL L + + +L LL +
Sbjct: 246 G-FRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVAT 304
Query: 627 ILMPNPPLEPELPAVSIKNGNFSWDS--KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLV 684
P + I N S+ P LS++NL I G L A+VG +G GK++L+
Sbjct: 305 PGSGEKAEVANEPPIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLL 364
Query: 685 SAMLGELPP--------------LKDASVVIRGTVAYVPQISWIFNATLRKNILFG-SEF 729
+ +LG L P L + R +++V Q ++F T+R+NIL +
Sbjct: 365 NLLLGFLAPTQGEIRVNGIDLRDLSPEA--WRKQISWVSQNPYLFAGTIRENILLARPDA 422
Query: 730 DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFNSC------ 783
+ +D + L + PD T IGE G +SGGQ QR+++ARA+ +
Sbjct: 423 SDEEIIAALDQAGLLEFVP-KPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLD 481
Query: 784 -----------------IKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEEL 826
++E + KT +++T++L DRI+++ G + E+G+ EEL
Sbjct: 482 EPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEEL 541
Query: 827 SKHGRLFQKL 836
S+ L+ L
Sbjct: 542 SEKQGLYANL 551
|
Length = 559 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 160 bits (407), Expect = 1e-39
Identities = 101/364 (27%), Positives = 184/364 (50%), Gaps = 28/364 (7%)
Query: 950 STSKNYNPGFYIAIY-TILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILRAPMLF 1008
TS Y Y+ ++LA G L+ + L +KRLH+ ML+S+L+APM
Sbjct: 921 PTSAYYIFYIYVGTADSVLALG-----FFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAV 975
Query: 1009 FHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLL 1068
+T GR++NRF++D+ ID + + F+ +L ++ ++ A +P+
Sbjct: 976 LNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIAAIPVA 1035
Query: 1069 ILFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMD 1128
++F Y+ T++++K+L+S RSP+++ +L GL TIRAF + K+++
Sbjct: 1036 VIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALN 1095
Query: 1129 NNIRFTLANTSSNRWLTIRLETLGGIMIWLIATF-AVMQNGRAENQVAFASTMGLLLSYT 1187
+ S+ RW +R++ + + ++ TF A+ N E +V G++L+
Sbjct: 1096 LHTANWFLYLSTLRWFQMRIDIIF-VFFFIAVTFIAIGTNQDGEGEV------GIILTLA 1148
Query: 1188 LNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAPG--------------MVESNRP 1233
+NI + L + + + + +V RV +IDLP E P ++E+
Sbjct: 1149 MNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHA 1208
Query: 1234 PPAWPSSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRI 1293
WPS G + + + +Y VL LSF+V ++VG++GRTG+GKS++L+AL R+
Sbjct: 1209 QKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRL 1268
Query: 1294 VELE 1297
+ E
Sbjct: 1269 LSTE 1272
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 155 bits (393), Expect = 2e-39
Identities = 81/382 (21%), Positives = 158/382 (41%), Gaps = 11/382 (2%)
Query: 920 WVIMILFACYLSTEVLRISSSTWLSFWTDQSTSKNYNPGFYIAIYTILAFGQVTVTLLNS 979
++++ L + +L + + D + + + +LA + L S
Sbjct: 14 KLLLLAILLLLLSALLSLLLPLLIGRIIDALLADLGELLELLLLLLLLALLGGVLRALQS 73
Query: 980 YWLIISSLRAAKRLHDSMLNSILRAPMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMF 1039
Y + L + +LR P+ FF G +I+R + D+ + V++ + +
Sbjct: 74 YLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLV 133
Query: 1040 MNQLWQLLSTFVLIGIVS-TISLWAIMPLLILFYAAYLYYQSTAREVKRLDSITRSPVYA 1098
+ L+ + VL+ +S ++L ++ L +L +R++ R + A
Sbjct: 134 FTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLS-LLARKSRKLSRRVREALGELNA 192
Query: 1099 QFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGIMIWL 1158
+ E+L+G+ I+AF A DR K ++ + R L + L + L + L
Sbjct: 193 RLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVL 252
Query: 1159 IATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYI 1218
+ + + + Y L + + + S + + A ER+ +
Sbjct: 253 VLALGGF---LVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELL 309
Query: 1219 DLPSEAPGMVESNRPPPAWPSSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGR 1278
D E + P P + GSI+FE+V Y + PVL +SF++ P EKV IVG
Sbjct: 310 DEEPEVE-----DPPDPLKDTIGSIEFENVSFSYPGK-KPVLKDISFSIEPGEKVAIVGP 363
Query: 1279 TGAGKSSMLNALFRIVELERGE 1300
+G+GKS+++ L R+ + GE
Sbjct: 364 SGSGKSTLIKLLLRLYDPTSGE 385
|
Length = 567 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 148 bits (374), Expect = 2e-39
Identities = 74/199 (37%), Positives = 111/199 (55%), Gaps = 29/199 (14%)
Query: 654 SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR--GTVAYVPQI 711
+P L NINL I G ++AI G TG GKTSL+ +LGEL P + I+ G +++ Q
Sbjct: 50 APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEP---SEGKIKHSGRISFSSQF 106
Query: 712 SWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQ 771
SWI T+++NI+FG +D +Y V L+ D+ P++D T +GE G+ +SGGQ+
Sbjct: 107 SWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRA 166
Query: 772 RVSMARAV------------------------FNSCIKEELRGKTRILVTNQLHFLPHVD 807
R+S+ARAV F SC+ + + KTRILVT+++ L D
Sbjct: 167 RISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKAD 226
Query: 808 RIILVSEGMIKEEGSFEEL 826
+I+++ EG G+F EL
Sbjct: 227 KILILHEGSSYFYGTFSEL 245
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 153 bits (389), Expect = 4e-39
Identities = 110/516 (21%), Positives = 204/516 (39%), Gaps = 63/516 (12%)
Query: 349 LLNHLLQSMQRGDPAWIGYIYAFLIFVGVSFG-VLTEAQYFQNVW--RVGFRLRSTLVAA 405
LL ++ + + A V L + Q R ++S L
Sbjct: 25 LLARVVDGLISAGEPLAELLPALGALALVLLLRALLG--WLQERAAARAAAAVKSQLRER 82
Query: 406 IFRKTLRLTHEARKGFPSGKVTNMITTDANALQQ-ISQQLHGLWSAPFRITLSMVLLYQQ 464
+ L +G PSG++ + AL ++ L L A + L+++
Sbjct: 83 LLEAVAALGPRWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVI-VPLAILAA--- 138
Query: 465 LGVASLLGSLMLVLMVPL-QTFII---SKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKC 520
+ + L+L+L PL F+I + ++ R + L + T+K
Sbjct: 139 VFPQDWISGLILLLTAPLIPIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKL 198
Query: 521 YAWEKSFQSRVQSIRDDELSWFRKAQ-------FLSAFNSFILNSIPVVVTVVSFGTFTL 573
+ K+ + ++ ++ +R+ FLS+ + ++ V + V G F L
Sbjct: 199 FGRAKAQAAAIRRSSEE----YRERTMRVLRIAFLSSAVLELFATLSVALVAVYIG-FRL 253
Query: 574 LGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILMPNPP 633
L GDL A L L PL L + + + L +L A R L P
Sbjct: 254 LAGDLDLATGLFVLLLAPEFYLPLRQLGAQYHARADGVAAAEALFAVLDAAPRPLAGKAP 313
Query: 634 L-EPELPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELP 692
+ P++ + ++ + P L ++ +P G VA+VG +G GK++L++ +LG +
Sbjct: 314 VTAAPAPSLEFSGVSVAYPGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVD 373
Query: 693 PLKDASVV------------IRGTVAYVPQISWIFNATLRKNILFG-SEFDPAKYWKTVD 739
P + + V R +A+VPQ ++F T+ +NI + A+ + ++
Sbjct: 374 PTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIREALE 433
Query: 740 VSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMAR---------------------- 777
+ L + LP T IGE G +SGGQ QR+++AR
Sbjct: 434 RAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAET 493
Query: 778 -AVFNSCIKEELRGKTRILVTNQLHFLPHVDRIILV 812
A ++ +G+T +LVT++L DRI+++
Sbjct: 494 EAEVLEALRALAQGRTVLLVTHRLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 154 bits (392), Expect = 8e-38
Identities = 86/308 (27%), Positives = 150/308 (48%), Gaps = 3/308 (0%)
Query: 317 LLRALNNSFGGRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPAW-IGYIYAFLIFV 375
LLR L + W FK+ +D+ PVLL + ++ + + W G +F+
Sbjct: 234 LLRTLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNATWGRGLGLVLTLFL 293
Query: 376 GVSFGVLTEAQYFQNVWRVGFRLRSTLVAAIFRKTLRLTHE--ARKGFPSGKVTNMITTD 433
+ +++ R G + RS L A IF K ++ + A+ +G++ NM++TD
Sbjct: 294 TQLIQSVCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTD 353
Query: 434 ANALQQISQQLHGLWSAPFRITLSMVLLYQQLGVASLLGSLMLVLMVPLQTFIISKMRKL 493
+ Q LWS+P + LS++LL + +G +L+ +L++ +PL I+
Sbjct: 354 VERINSFMQYCMYLWSSPMVLLLSILLLSRLVGWCALMAVAVLLVTLPLNGAIMKHQMAA 413
Query: 494 TKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNS 553
++ + D RV TNE + + K AWE F + ++ R EL + R Q S
Sbjct: 414 RRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQLARVATS 473
Query: 554 FILNSIPVVVTVVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVS 613
F+ N+ P ++ V F + LLG +LTP F +++L VLR P M+P + + V+ VS
Sbjct: 474 FVNNATPTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVS 533
Query: 614 LQRLEELL 621
++R+ L
Sbjct: 534 IKRISTFL 541
|
Length = 1560 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 143 bits (363), Expect = 2e-35
Identities = 117/529 (22%), Positives = 223/529 (42%), Gaps = 63/529 (11%)
Query: 366 GYIYAFLIFVGVS----FGVL-TEAQYFQNVWRVG----FRLRSTLVAAIFRKTLRLTHE 416
G Y F + + + +L T A+Y + + V FR+ S L +F K L+
Sbjct: 50 GLAYIFNVMLPSAGVRGLAILRTAARYVERL--VSHDATFRVLSALRVRLFEKLEPLSPA 107
Query: 417 ARKGFPSGKVTNMITTDANALQQISQQLHGLWSAPFRITLSMVLL--YQQLGVASLLGSL 474
+ SG + N + D +AL + ++ + + + + + +A LLG +
Sbjct: 108 LLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGLI 167
Query: 475 MLVLMVPLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSI 534
+L+L++ + T RK Q S + + + + E +++ ++
Sbjct: 168 LLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYR---TAL 224
Query: 535 RDDELSWF---RKAQFLSAFNSFIL---NSIPVVVTVVSFGTFTLLGGDLTPARAFTSLS 588
E SW RK + + IL + V+ ++ G P A L
Sbjct: 225 EATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLV 284
Query: 589 LFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILMPNPPLEPELPAVSIKNGNF 648
+FA L + P + S +RL ++L + + P+ A+ ++N +F
Sbjct: 285 IFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFPDEQTATTGQALELRNVSF 344
Query: 649 S-WDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP-------------- 693
+ ++ L N NL + G VAI+G +G GK++L+ + G P
Sbjct: 345 TYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIAS 404
Query: 694 LKDASVVIRGTVAYVPQISWIFNATLRKNILFGS-EFDPAKYWKTVDVSALQHDLDLLPD 752
L + + +R T++ + Q +F+ TLR N+ + + + W + L+ L+ PD
Sbjct: 405 LDEQA--LRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPD 462
Query: 753 RDLTEIGERGVNISGGQKQRVSMARAVFNSC-----------------------IKEELR 789
T +GE G +SGG+++R+++ARA+ + + E
Sbjct: 463 GLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE 522
Query: 790 GKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLME 838
GKT ++VT++L L +DRII++ G I EEG+ EL + +++L +
Sbjct: 523 GKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLANNGRYKRLYQ 571
|
Length = 573 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 1e-33
Identities = 65/227 (28%), Positives = 114/227 (50%), Gaps = 37/227 (16%)
Query: 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP------- 693
+ +N NFS+D K P L +IN I G VAIVG TG GKT+L++ ++ P
Sbjct: 3 IEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILI 62
Query: 694 ----LKDASV-VIRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDL- 747
++D S +R + V Q +++F+ T+ +NI G + A HD
Sbjct: 63 DGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFI 122
Query: 748 DLLPDRDLTEIGERGVNISGGQKQRVSMARAVF-----------------------NSCI 784
LP+ T +GE G N+S G++Q +++ARA+ +
Sbjct: 123 MKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEAL 182
Query: 785 KEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEEL-SKHG 830
++ ++G+T I++ ++L + + D+I+++ +G I EEG+ +EL +K G
Sbjct: 183 EKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAKKG 229
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 128 bits (325), Expect = 6e-33
Identities = 61/274 (22%), Positives = 105/274 (38%), Gaps = 5/274 (1%)
Query: 329 FWLGGLFKIGNDLSQFVGPVLLNHLLQSM--QRGDPAWIGYIYAFLIFVGVSFGVLTEAQ 386
+ L I + V P+LL L S+ GD A L+ L
Sbjct: 1 LLIAILLLILAGATALVFPLLLGRFLDSLIDGNGDERSSLISLAILLIAVGVLQGLLLQG 60
Query: 387 YFQNVWRVGFRLRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQLHG 446
F R+G R+R L A+ R+ L L G++T+ +T D + ++ G
Sbjct: 61 SFYLGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGDKLG 120
Query: 447 LWSAPFRITLSMVLLYQQLGV-ASLLGSLMLVLMVPLQTFIISKMRKLTKEGLQWTDRRV 505
L+ + ++ G +L+ +L L++ L + K+RKL ++ + +
Sbjct: 121 LFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKAYAKAG 180
Query: 506 SLTNEILAAMDTVKCYAWEKSFQSRVQSIRDD-ELSWFRKAQFLSAFNSFILNSIP-VVV 563
S+ E L+ + TVK + E+ R +D E + +KA
Sbjct: 181 SVAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGITQLISYLSYA 240
Query: 564 TVVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPL 597
+ FG + ++ G L+ F LSL L PL
Sbjct: 241 LALWFGAYLVISGGLSVGTVFAFLSLGLQLSGPL 274
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 2e-32
Identities = 129/540 (23%), Positives = 235/540 (43%), Gaps = 83/540 (15%)
Query: 360 GDPAWIGYIYAFLIFVGVSFGVLTEAQYFQNVWRVGFRLRSTLVAAIFRKTLRLTHEARK 419
+ +AFL+ V + + T A+++ V +G R+ + + A+F + L+
Sbjct: 52 DSSGLLNRYFAFLLVVALVLALGTAARFYL-VTWLGERVVADIRRAVFAHLISLSPSFFD 110
Query: 420 GFPSGKVTNMITTDANALQQISQQLHGLWSAPFRITLSMVLLYQQLGVASLLGSLMLVLM 479
SG+V + +TTD LQ + + S R L + + + S + +++L
Sbjct: 111 KNRSGEVVSRLTTDTTLLQSV---IGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLA 167
Query: 480 VPLQTFIIS----KMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCY------------AW 523
VPL I ++RKL++E S E L A+ TV+ + A
Sbjct: 168 VPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAV 227
Query: 524 EKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSIPVVVTVVSFGTFTLLGGDLTPAR- 582
EK++++ Q IR L L+A + +V V+ G ++ G ++
Sbjct: 228 EKAYEAARQRIRTRAL--------LTAIVIVL--VFGAIVGVLWVGAHDVIAGKMSAGTL 277
Query: 583 -AFTSLSLFAVLRFPLNMLPNLLSQVVN----ANVSLQRLEELLLAEERILMPNPPLEPE 637
F ++ LS+V A + +RL ELL AE I P P
Sbjct: 278 GQFVFYAVMVAGSI------GTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTLP 331
Query: 638 LPA---VSIKNGNFSWDSK--SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAML---- 688
+P + + NF++ ++ P L +NL + G VA+VG +G GK++L +L
Sbjct: 332 VPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYD 391
Query: 689 ---GEL----PPLKDAS-VVIRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDV 740
G + L+ +R +A VPQ +F A++ +NI +G + +
Sbjct: 392 PQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAAR 451
Query: 741 SALQHD-LDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF------------------- 780
+A H+ + LP+ T +GERGV +SGGQ+QR+++ARA+
Sbjct: 452 AAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAES 511
Query: 781 ----NSCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKL 836
++ ++G+T +++ ++L + DRI+++ +G I +G+ EL G L+ +L
Sbjct: 512 EQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAKGGLYARL 571
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 9e-32
Identities = 126/471 (26%), Positives = 212/471 (45%), Gaps = 70/471 (14%)
Query: 402 LVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQI-----SQQLHGLWSAPFRITL 456
L A +F + L L EAR G N + + + S L L PF + L
Sbjct: 222 LSAKLFERVLGLRMEARPA-SVGSFANQL----REFESVRDFFTSATLTALIDLPFAL-L 275
Query: 457 SMVLLYQQLGVASLLGSLMLVLMVPLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMD 516
++++ G + + + L++ + + +L +E ++ + +R ++ E L+ ++
Sbjct: 276 FLLVIAIIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLE 335
Query: 517 TVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSA----FNSFI--LNSIPVVVTVVSFGT 570
T+K E FQ R + K++FLS F FI L S+ +VV G
Sbjct: 336 TIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIVV----VGV 391
Query: 571 FTLLGGDLTPAR--AFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAE---- 624
+ + G+LT A LS A+ PL L LL++ A +LQ L+EL+
Sbjct: 392 YLISDGELTMGGLIACVMLSGRALA--PLGQLAGLLTRYQQAKTALQSLDELMQLPVERP 449
Query: 625 -ERILMPNPPLEPELPAVSIKNGNFSW-DSKSPTLSNINLDIPVGSLVAIVGGTGEGKTS 682
+ P L+ E + +N +F++ ++P L N++L I G VAI+G G GK++
Sbjct: 450 EGTRFLHRPRLQGE---IEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKST 506
Query: 683 LVSAMLGELPPLKDA------------SVVIRGTVAYVPQISWIFNATLRKNILFGSEF- 729
L+ +LG P + + +R + YVPQ +F TLR NI G+ +
Sbjct: 507 LLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYA 566
Query: 730 DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFNS------- 782
D + + +++ + + PD +IGERG ++SGGQ+Q V++ARA+
Sbjct: 567 DDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLD 626
Query: 783 ----------------CIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMI 817
+K L GKT +LVT++ L VDRII++ G I
Sbjct: 627 EPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRI 677
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 5e-30
Identities = 110/433 (25%), Positives = 187/433 (43%), Gaps = 55/433 (12%)
Query: 454 ITLSMVLLYQQLGVASLLGSLMLVLMVPLQTFIISKMR---KLTKEGLQWTDRRVSLTNE 510
+ + + L+ Q LL L L+ + II R KL + +Q S E
Sbjct: 284 VIVGLFLVRQN----MLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIE 339
Query: 511 ILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSIPVV------VT 564
L ++T+K E R I D E + F +I V V
Sbjct: 340 DLNGIETIKSLTSE---AERYSKI-DSEFGDYLNKSFKYQKADQGQQAIKAVTKLILNVV 395
Query: 565 VVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAE 624
++ G + ++ G LT + T +L + PL + NL ++ A V+ RL E+ L +
Sbjct: 396 ILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVD 455
Query: 625 ERILMPNPPLEPELPAVSI--KNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTS 682
+ E I + ++S+ S LS+I+L I + S IVG +G GK++
Sbjct: 456 SEFINKKKRTELNNLNGDIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKST 515
Query: 683 LVSAMLGELPP-----------LKDASV-VIRGTVAYVPQISWIFNATLRKNILFGSE-- 728
L ++G LKD +R + Y+PQ +IF+ ++ +N+L G++
Sbjct: 516 LAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKEN 575
Query: 729 FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF---NSCIK 785
+ W +++ ++ D++ +P TE+ E G +ISGGQKQR+++ARA+ I
Sbjct: 576 VSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLIL 635
Query: 786 EE-------------------LRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEEL 826
+E L+ KT I V ++L D+II++ G I E+GS +EL
Sbjct: 636 DESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDEL 695
Query: 827 SKHGRLFQKLMEN 839
+ L+ N
Sbjct: 696 LDRNGFYASLIHN 708
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 8e-30
Identities = 120/491 (24%), Positives = 204/491 (41%), Gaps = 73/491 (14%)
Query: 393 RVGFRLRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQLHG-----L 447
R+G +L L IF + T G + + L Q+ Q L G
Sbjct: 72 RIGEKLDGALNQPIFAASFSATLRRGSGDGLQALRD--------LDQLRQFLTGPGLFAF 123
Query: 448 WSAPFRITLSMV--LLYQQLGVASLLGSLMLVLMVPLQTFIISKMRKLTKEGLQWTDRRV 505
+ AP+ +V LL+ +G+ +L G+++LV + L +K KE + + R
Sbjct: 124 FDAPWMPIYLLVCFLLHPWIGILALGGAVVLVGLALLNNRA---TKKPLKEATEASIRAN 180
Query: 506 SLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQ----FLSAFNSFILNSIPV 561
+L + L + ++ + R LS A LS + + +
Sbjct: 181 NLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQS 240
Query: 562 VVTVVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELL 621
+V + G + + G++TP L P++ Q A + +RL ELL
Sbjct: 241 LVLGL--GAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELL 298
Query: 622 ----LAEERILMPNPPLEPELPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTG 677
+ + +P P + V+I K PTL I+ + G +AI+G +G
Sbjct: 299 ANYPSRDPAMPLPEPEGHLSVENVTIVPPG----GKKPTLRGISFSLQAGEALAIIGPSG 354
Query: 678 EGKTSLVSAMLGELPPLKDASVVIRG-------------TVAYVPQISWIFNATLRKNIL 724
GK++L ++G PP SV + G + Y+PQ +F T+ +NI
Sbjct: 355 SGKSTLARLIVGIWPPTS-GSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIA 413
Query: 725 -FGSEFDPAKYWKTVDVSALQHDLDL-LPDRDLTEIGERGVNISGGQKQRVSMARAVF-- 780
FG DP K + ++ + H+L L LPD T IG G +SGGQ+QR+++ARA++
Sbjct: 414 RFGENADPEKIIEAAKLAGV-HELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGD 472
Query: 781 ---------NSCIKEE-------------LRGKTRILVTNQLHFLPHVDRIILVSEGMIK 818
NS + EE RG T +++T++ L VD+I+++ +G I
Sbjct: 473 PKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIA 532
Query: 819 EEGSFEELSKH 829
G +E+
Sbjct: 533 RFGERDEVLAK 543
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 3e-28
Identities = 68/237 (28%), Positives = 115/237 (48%), Gaps = 45/237 (18%)
Query: 641 VSIKNGNFSWDSK-SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKD--- 696
V KN F + P L +I+LDIP G VA+VG +G GK++LV+ +P D
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNL----IPRFYDVDS 56
Query: 697 ASVVIRGT-------------VAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSAL 743
++I G + V Q ++FN T+ +NI +G + + +A
Sbjct: 57 GRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAAN 116
Query: 744 QHDL-DLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN--------------------- 781
H+ LP+ T IGERGV +SGGQ+QR+++ARA+
Sbjct: 117 AHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERL 176
Query: 782 --SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKL 836
+ ++ ++ +T ++ ++L + + DRI+++ +G I E G+ EEL G ++ KL
Sbjct: 177 VQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYAKL 233
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 5e-28
Identities = 53/211 (25%), Positives = 90/211 (42%), Gaps = 77/211 (36%)
Query: 641 VSIKNGNFSWDSKS-PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP------ 693
+ KN +FS+ + P L +++L I G VAIVG +G GK++L+ +L P
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60
Query: 694 -----LKDASV-VIRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDL 747
L+D + +R +AYVPQ ++F+ T+R+NIL
Sbjct: 61 IDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENIL----------------------- 97
Query: 748 DLLPDRDLTEIGERGVNISGGQKQRVSMARAV-----------------------FNSCI 784
SGGQ+QR+++ARA+ +
Sbjct: 98 ------------------SGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEAL 139
Query: 785 KEELRGKTRILVTNQLHFLPHVDRIILVSEG 815
+ +GKT I++ ++L + DRII++ +G
Sbjct: 140 RALAKGKTVIVIAHRLSTIRDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 8e-28
Identities = 127/564 (22%), Positives = 238/564 (42%), Gaps = 61/564 (10%)
Query: 324 SFGGRFWLGGLFKIGNDLSQFVGPVLLNHLL-QSMQRGDPAWIGYIYAFLIFVGVSFGVL 382
+ L G+ I ++ LL LL D + + ++ +I + V G+
Sbjct: 11 PYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRDRSVLWWVPLVVIGLAVLRGI- 69
Query: 383 TEAQYFQN--VWRVGFRLRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQI 440
+ + V ++ + +F K L L P+G + + IT D+ Q+
Sbjct: 70 --CSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSE---QV 124
Query: 441 SQQLHGLWSAPFRITLSMVLLYQQLGVASLLGSLMLVLMVPLQTFIIS----KMRKLTKE 496
+ + R TL+++ L+ L S +L++V+M+P+ + ++ ++R+++KE
Sbjct: 125 ASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLRRISKE 184
Query: 497 GLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRV----QSIRDDELSWFRKAQFLSAFN 552
+ ++ E L VK + + R R + + S +
Sbjct: 185 IQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAM---KMTSAGSISS 241
Query: 553 SFILNSIPVVVTVVSFGTFTLLGGDLTPARAFTSL--SLFAVLRFPLNMLPNLLSQVVNA 610
+ + VV F A FT+ ++ A++R PL L N+ + +
Sbjct: 242 PITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIR-PLKSLTNVNAPMQRG 300
Query: 611 NVSLQRLEELLLAEERILMPNPPLEPELPAVSIKNGNFSWDSKS-PTLSNINLDIPVGSL 669
+ + L LL + +E V +N F + + P L +I+L I G
Sbjct: 301 LAAAESLFTLLDSPPEKDTGTRAIERARGDVEFRNVTFRYPGRDRPALDSISLVIEPGET 360
Query: 670 VAIVGGTGEGKTSLVSAM-----------LGELPPLKDASVV-IRGTVAYVPQISWIFNA 717
VA+VG +G GK++LV+ + L + L D ++ +R VA V Q +FN
Sbjct: 361 VALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFND 420
Query: 718 TLRKNILFG--SEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSM 775
T+ NI +G + D A+ + + + Q +D LP T IGE GV +SGGQ+QR+++
Sbjct: 421 TIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAI 480
Query: 776 ARAVF-----------NSCIKEE------------LRGKTRILVTNQLHFLPHVDRIILV 812
ARA+ S + E ++G+T +++ ++L + DRI+++
Sbjct: 481 ARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVM 540
Query: 813 SEGMIKEEGSFEELSKHGRLFQKL 836
+G I E G+ EL L+ +L
Sbjct: 541 DDGRIVERGTHNELLARNGLYAQL 564
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 1e-27
Identities = 121/495 (24%), Positives = 199/495 (40%), Gaps = 80/495 (16%)
Query: 393 RVGFRLRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQLHGL----- 447
R+G RL L +F + R SG + L Q+ Q L G
Sbjct: 89 RIGERLDRQLNGPVFAASFSAPLLRR---GSGDGLQPL----RDLDQVRQFLTGTGLTAF 141
Query: 448 ----WSAPFRITLSMVLLYQQLGVASLLGSLMLVLMVPLQTFIISKMRKLTKEGLQWTDR 503
W P + + L + LG+ +L G+++LV++ L RK KE + + R
Sbjct: 142 FDAPWM-PLYLAVIF-LFHPWLGLIALAGAIILVVLALLNERAT---RKPLKEASEASIR 196
Query: 504 RVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSIPVVV 563
L + L + ++ + R LS +A + + ++ + +
Sbjct: 197 ANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMAL 256
Query: 564 TVVSFGTFTLL--GGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELL 621
G L G++TP L P+++ Q V A S +RL ELL
Sbjct: 257 QSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELL 316
Query: 622 ----LAEERILMPNPPLEPELPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTG 677
A ER+ +P P + ++ K P L I+ + G + I+G +G
Sbjct: 317 AELPAAAERMPLPAPQGALSVERLTAAPPG----QKKPILKGISFALQAGEALGIIGPSG 372
Query: 678 EGKTSLVSAMLGELPPLKDASVVIRGT-------------VAYVPQISWIFNATLRKNIL 724
GK++L ++G PP SV + G + Y+PQ +F+ T+ +NI
Sbjct: 373 SGKSTLARLLVGIWPPTS-GSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIA 431
Query: 725 -FGSEFDPAKYWKTVDVSALQ----HDLDL-LPDRDLTEIGERGVNISGGQKQRVSMARA 778
FG E DP K + A + H+L L LP T IGE G +SGGQ+QR+++ARA
Sbjct: 432 RFGEEADPEKV-----IEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARA 486
Query: 779 VF-----------NSCIKEE-------------LRGKTRILVTNQLHFLPHVDRIILVSE 814
++ NS + E RG T +++ ++ L VD+I+++ +
Sbjct: 487 LYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQD 546
Query: 815 GMIKEEGSFEELSKH 829
G I G EE+
Sbjct: 547 GRIAAFGPREEVLAK 561
|
Length = 580 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 2e-27
Identities = 40/60 (66%), Positives = 49/60 (81%)
Query: 1241 GSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
G I+F++V LRYRP LPPVL +SF++ P EKVGIVGRTG+GKSS+L ALFR+VEL G
Sbjct: 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGS 60
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 1e-26
Identities = 66/237 (27%), Positives = 117/237 (49%), Gaps = 46/237 (19%)
Query: 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV 700
+ +N F++D P L +++ IP G VAIVG +G GK S + +L + S++
Sbjct: 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGK-STILRLLFRFYDVSSGSIL 59
Query: 701 I-------------RGTVAYVPQISWIFNATLRKNILFG----SEFDPAKYWKTVDVSAL 743
I R + VPQ + +FN T+ NI +G ++ + + K +
Sbjct: 60 IDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQI--- 116
Query: 744 QHDLDL-LPDRDLTEIGERGVNISGGQKQRVSMARAVFNS-------------------- 782
HD + PD T +GERG+ +SGG+KQRV++ARA+ +
Sbjct: 117 -HDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTERE 175
Query: 783 ---CIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKL 836
+++ +G+T I++ ++L + + D+II++ +G I E G+ EEL G L+ ++
Sbjct: 176 IQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEM 232
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 2e-26
Identities = 62/220 (28%), Positives = 104/220 (47%), Gaps = 47/220 (21%)
Query: 640 AVSIKNGNFSW-DSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLG--------- 689
+ +N +FS+ + + P L N++L I G VAI+G G GK++L+ + G
Sbjct: 2 RIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSV 61
Query: 690 --------ELPPLKDASVVIRGTVAYVPQISWIFNATLRKNILFGSEF-DPAKYWKTVDV 740
+L P +R + YVPQ +F TLR NI G+ D + + ++
Sbjct: 62 LLDGTDIRQLDP-----ADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAEL 116
Query: 741 SALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN------------------- 781
+ + ++ P+ +IGERG +SGGQ+Q V++ARA+ N
Sbjct: 117 AGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSE 176
Query: 782 ----SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMI 817
+++ L KT I++T++ L VDRII++ G I
Sbjct: 177 ERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRI 216
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 1e-25
Identities = 62/221 (28%), Positives = 107/221 (48%), Gaps = 35/221 (15%)
Query: 654 SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELP----------PLKDASVVI-R 702
+N +P G +A+VG +G GKTSL++A+LG LP L++ R
Sbjct: 363 KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESWR 422
Query: 703 GTVAYVPQISWIFNATLRKNILFG-SEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGER 761
+++V Q + + TLR N+L G + + + ++ + + L LLP T IG++
Sbjct: 423 KHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQ 482
Query: 762 GVNISGGQKQRVSMARAVFNSC-----------------------IKEELRGKTRILVTN 798
+S GQ QR+++ARA+ C + R +T ++VT+
Sbjct: 483 AAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTH 542
Query: 799 QLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLMEN 839
QL L D+I ++ +G I ++G + ELS+ G LF L+ +
Sbjct: 543 QLEDLAQWDQIWVMQDGQIVQQGDYAELSQAGGLFATLLAH 583
|
Length = 588 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 1e-25
Identities = 82/425 (19%), Positives = 160/425 (37%), Gaps = 57/425 (13%)
Query: 394 VGFRLRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQ---------ISQQL 444
R L ++ + R R+ G + + D +ALQ +
Sbjct: 80 AALRSLGALRVRVYERLARQALAGRRRLRRGDLLGRLGADVDALQDLYVRVIVPAGVALV 139
Query: 445 HGLWSAPFRITLSMVLLYQQLGVASLLGSLMLVLMVPLQTFIISKMRKLTKEGLQWTDRR 504
G + ++ +L + G L+ + PL + ++ +
Sbjct: 140 VGAAA-----VAAIAVLSVPAALILAAGLLLAGFVAPLVSLRAARAAE---------QAL 185
Query: 505 VSLTNEILAAMDTVKCYAWEKSFQSR----VQSIRDDELSWFRKAQFLSAFNSFILNSIP 560
L E+ A + A E + + + + R + +A +
Sbjct: 186 ARLRGELAAQLTDALDGAAELVASGALPAALAQVEEADRELTRAERRAAAATALGAALTL 245
Query: 561 -----VVVTVVSFGTFTLLGGDLTPAR----AFTSLSLFAVLRFPLNMLPNLLSQVVNAN 611
V+ + G + G L P L+ F LP Q+
Sbjct: 246 LAAGLAVLGALWAGGPAVADGRLAPVTLAVLVLLPLAAFE----AFAALPAAAQQLTRVR 301
Query: 612 VSLQRLEELLLAEERILMPNPP----LEPELPAVSIKNGNFSWDSKSPTLSNINLDIPVG 667
+ +R+ E+L A + + P + P + +++ + + P L ++LD+P G
Sbjct: 302 AAAERIVEVLDAAGPVAEGSAPAAGAVGLGKPTLELRDLSAGYPGAPPVLDGVSLDLPPG 361
Query: 668 SLVAIVGGTGEGKTSLVSAMLGELPPLK--------DASVV----IRGTVAYVPQISWIF 715
VAI+G +G GK++L++ + G L PL+ S + +R V+ Q + +F
Sbjct: 362 ERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLF 421
Query: 716 NATLRKNILFGS-EFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVS 774
+ T+R+N+ + + W ++ L L LPD T +GE G +SGG++QR++
Sbjct: 422 DTTVRENLRLARPDATDEELWAALERVGLADWLRALPDGLDTVLGEGGARLSGGERQRLA 481
Query: 775 MARAV 779
+ARA+
Sbjct: 482 LARAL 486
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 2e-25
Identities = 49/254 (19%), Positives = 98/254 (38%), Gaps = 5/254 (1%)
Query: 939 SSTWLSFWTDQSTSKNYNPGFYIAIYTILAFGQVTVTLLNS-YWLIISSLRAAKRLHDSM 997
+L D + + +AI I + L S Y R KRL ++
Sbjct: 22 LGRFLDSLIDGNG-DERSSLISLAILLIAVGVLQGLLLQGSFYLGERLGQRIRKRLFRAL 80
Query: 998 LNSILRAPMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVS 1057
L IL PM FF TN +G + +R + D+ I + + +F L ++ F+++
Sbjct: 81 LRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGDKLGLFFQSLATVVGGFIVMFYYG 140
Query: 1058 TISLWAIMPLLILFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYD 1117
++ +L L R++ R + + + E+L+G+ T++AF +
Sbjct: 141 WKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKAYAKAGSVAEESLSGIRTVKAFGREE 200
Query: 1118 RMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGIMIWLIATFA---VMQNGRAENQV 1174
+ K++++ + + + + + + L F V+ G + V
Sbjct: 201 YELERYDKALEDAEKAGIKKAITAGLSFGITQLISYLSYALALWFGAYLVISGGLSVGTV 260
Query: 1175 AFASTMGLLLSYTL 1188
++GL LS L
Sbjct: 261 FAFLSLGLQLSGPL 274
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 3e-25
Identities = 64/238 (26%), Positives = 117/238 (49%), Gaps = 38/238 (15%)
Query: 641 VSIKNGNFSWDSKS--PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAML-------GEL 691
+ KN +F + S+ P L ++L IP G VA+VG +G GK+++VS + GE+
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 692 P----PLKDASV-VIRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHD 746
++D ++ +R + V Q +F+ T+ +NI +G + + A HD
Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHD 120
Query: 747 -LDLLPDRDLTEIGERGVNISGGQKQRVSMARA-----------------------VFNS 782
+ LPD T +GERG +SGGQKQR+++ARA +
Sbjct: 121 FIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQE 180
Query: 783 CIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLMENA 840
+ ++G+T I++ ++L + + D I ++ G + E+G+ +EL ++ KL++
Sbjct: 181 ALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAKLVKAQ 238
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 1e-24
Identities = 79/348 (22%), Positives = 141/348 (40%), Gaps = 33/348 (9%)
Query: 966 ILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILRAPMLFFHTNPIGRVINRFSRDL 1025
+ A + + LL +Y + R L +LR P+ +F +G +I+R R+L
Sbjct: 202 LAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRV-REL 260
Query: 1026 GDIDRNVASFV-NMFMNQLWQLLSTFVLIGIVSTISLW------AIMPLL-ILFYAAYLY 1077
+ F+ + + LL + + ++ S A +PL ++
Sbjct: 261 ----EQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPL 316
Query: 1078 YQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRM----AKINGKSMDNNIRF 1133
+ R++ + + E + G+ T++A A R K ++ +
Sbjct: 317 LRRKTRKLIEESAEQ----QSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKT 372
Query: 1134 TLANTSSNRWLTIRLETLGGIMIWLIATFAVMQNGRAENQ-VAFASTMGLLLSYTLNITN 1192
N ++ L+ L ++I V++ Q VAF G +S ++
Sbjct: 373 EKLALILNTIKSL-LQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQ 431
Query: 1193 LLSGVLRQASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSGSIKFEDVVLRY 1252
L + + A+ER+G +D P E G G I+FE+V RY
Sbjct: 432 LWTDFQ-------QAKVALERLGDILDTPPEQEG---DKTLIHLPKLQGEIEFENVSFRY 481
Query: 1253 RPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
P+ PPVL LS + P EKV IVGR+G+GKS++L L + + ++G
Sbjct: 482 GPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGR 529
|
Length = 709 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 2e-24
Identities = 124/504 (24%), Positives = 209/504 (41%), Gaps = 88/504 (17%)
Query: 397 RLRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQLHG-----LWSAP 451
R+ L A ++R L L G+ + L+QI L G +
Sbjct: 209 RIDVELGARLYRHLLGLP----LGYFESRRVGDTVARVRELEQIRNFLTGSALTVVLDLL 264
Query: 452 FRITLSMVLLY---QQLGVASLLGSLMLVLMVPLQTFIISKMRKLTKEGLQWTDRRVSLT 508
F + V+ + GV ++GSL+ ++ + F+ +RK ++ + + S
Sbjct: 265 FVVVFLAVMFFYSPTLTGV--VIGSLVCYALLSV--FVGPILRKRVEDKFERSAAATSFL 320
Query: 509 NEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSIPVVVTVVS- 567
E + ++T+K A E FQ+R ++ + L + I + +
Sbjct: 321 VESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILL 380
Query: 568 -FGTFTLLGGDLTPAR--AFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAE 624
FG ++GG L+P + AF L+ P+ L L ++L+RL ++L
Sbjct: 381 WFGAHLVIGGALSPGQLVAFNMLAGRVTQ--PVLRLAQLWQDFQQTGIALERLGDIL--- 435
Query: 625 ERILMPNPPLEP------ELP----AVSIKNGNFSWDSKSP-TLSNINLDIPVGSLVAIV 673
N P EP LP A++ +N F + SP LSN+NLDI G + IV
Sbjct: 436 ------NSPTEPRSAGLAALPELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIV 489
Query: 674 GGTGEGKTSLVSAM-----------------LGELPPLKDASVVIRGTVAYVPQISWIFN 716
G +G GK++L + L P +R + V Q + +F+
Sbjct: 490 GPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADP-----AWLRRQMGVVLQENVLFS 544
Query: 717 ATLRKNILFGSEFDPAKYWKTVDVSALQHDLDL-LPDRDLTEIGERGVNISGGQKQRVSM 775
++R NI + P ++ A HD LP TE+GE+G N+SGGQ+QR+++
Sbjct: 545 RSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAI 604
Query: 776 ARAVFN-------------------SCIKEEL----RGKTRILVTNQLHFLPHVDRIILV 812
ARA+ + I + RG+T I++ ++L + DRII++
Sbjct: 605 ARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVL 664
Query: 813 SEGMIKEEGSFEELSKHGRLFQKL 836
+G I E G EEL L+ +L
Sbjct: 665 EKGQIAESGRHEELLALQGLYARL 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 2e-24
Identities = 36/63 (57%), Positives = 47/63 (74%)
Query: 1237 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVEL 1296
WP G I+ E++ +RY P+LPPVL +SF V EK+GIVGRTGAGKS+++ ALFR +E
Sbjct: 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEA 60
Query: 1297 ERG 1299
E G
Sbjct: 61 EEG 63
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 99.9 bits (250), Expect = 2e-23
Identities = 54/220 (24%), Positives = 98/220 (44%), Gaps = 36/220 (16%)
Query: 639 PAVSIKNGNFSW-DSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLK-- 695
+ KN + + + P L NI+ I G V IVG TG GK+SL+ A+ +
Sbjct: 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGS 60
Query: 696 ------DASVV----IRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQH 745
D S + +R ++ +PQ +F+ T+R N+ E+ + W+ ++ L+
Sbjct: 61 ILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKE 120
Query: 746 DLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFNSC---------------------- 783
++ LP T + E G N+S GQ+Q + +ARA+
Sbjct: 121 FVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQK 180
Query: 784 -IKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGS 822
I+E + T + + ++L + DRI+++ +G + E S
Sbjct: 181 TIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 3e-23
Identities = 108/440 (24%), Positives = 195/440 (44%), Gaps = 78/440 (17%)
Query: 454 ITLSMVLLYQQLGVASLLGSLMLVLMVPLQTFI----ISKMRKLTKEGLQWTDRRVSLTN 509
+ L++ L + L +A LG ++L+L++ L + LT Q+ RV LT
Sbjct: 149 LVLTIGLSFFDLTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQY---RVQLT- 204
Query: 510 EILAAMDTVKCYAWEKSFQSRVQSIRDDELSWF---RKAQFLSAFNSFIL---NSIPVVV 563
E L + + E ++ Q + E W R+ L+ + ++ N + VV+
Sbjct: 205 EWLQGQAELTLFGAEDRYR---QQLEQTEQQWLAAQRRQANLTGLSQALMILANGLTVVL 261
Query: 564 T--VVSFGTFTLLGGDLTPARAFTSLSLFAVLR-----FPLNMLPNLLSQVVNANVSLQR 616
+ + G G A +L +FA L P+ L QV+ S +R
Sbjct: 262 MLWLAAGGV-----GGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIA---SARR 313
Query: 617 LEELLLAEERILMP-NPPLEPELPAVSIKNGNFSW-DSKSPTLSNINLDIPVGSLVAIVG 674
+ E+ + + P + ++++ N +F++ D P L ++L I G VA++G
Sbjct: 314 INEITEQKPEVTFPTTSTAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLG 373
Query: 675 GTGEGKTSLVS-------AMLGEL----PPLKDAS-VVIRGTVAYVPQISWIFNATLRKN 722
TG GK++L+ GE+ P+ D S +R ++ V Q +F+ATLR N
Sbjct: 374 RTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDN 433
Query: 723 ILFGSEFDPAKYWKTVDVSALQH-DLDLLPDRDL---TEIGERGVNISGGQKQRVSMARA 778
+L + A ++V LQ L+ L + D +GE G +SGG+++R+ +ARA
Sbjct: 434 LLLAA--PNASDEALIEV--LQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARA 489
Query: 779 VFN-----------------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEG 815
+ + + E + KT +++T++L L DRI ++ G
Sbjct: 490 LLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNG 549
Query: 816 MIKEEGSFEEL-SKHGRLFQ 834
I E+G+ +EL ++ GR +Q
Sbjct: 550 QIIEQGTHQELLAQQGRYYQ 569
|
Length = 574 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 1e-21
Identities = 87/370 (23%), Positives = 168/370 (45%), Gaps = 55/370 (14%)
Query: 525 KSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSIPVVVTVVSFGTFTLLGGDLTPARAF 584
K F + + S + L W+ S N + ++I ++ +V GT ++ G+L+
Sbjct: 222 KQFTNNLLSAQYPVLDWW---ALASGLNR-MASTISMMCILV-IGTVLVIKGELSVGEVI 276
Query: 585 TSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILMPNPPLE-PELP---- 639
+ +L L+ + ++Q+ A +LE+ E+ + P + PELP
Sbjct: 277 AFIGFANLLIGRLDQMSGFITQIFEARA---KLEDFFDLEDSVFQREEPADAPELPNVKG 333
Query: 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASV 699
AV ++ F + + S + +++ + G VAIVG TG GKT+L++ +L + +
Sbjct: 334 AVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLIN-LLQRVYDPTVGQI 392
Query: 700 VIRGT-------------VAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHD 746
+I G +A V Q + +FN ++R+NI G E A + + +
Sbjct: 393 LIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGRE--GATDEEVYEAAKAAAA 450
Query: 747 LDLLPDRD---LTEIGERGVNISGGQKQRVSMARAVFNSC-------------IKEELRG 790
D + R T +GERG +SGG++QR+++ARA+ + ++ E R
Sbjct: 451 HDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARV 510
Query: 791 K----------TRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLMENA 840
K T ++ ++L + + D ++ + +G + E+GSF+EL + F KL+ +
Sbjct: 511 KNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKDGRFYKLLRRS 570
Query: 841 GKMEEMEERE 850
G + +
Sbjct: 571 GLLTNQPATK 580
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 1e-21
Identities = 123/537 (22%), Positives = 222/537 (41%), Gaps = 101/537 (18%)
Query: 371 FLIFVGVSFGVLTEAQYFQN--VWRVGFRLRSTLVAAIFRKTLRLTHEARKGFPSGKVTN 428
L + + G Q Q+ V R+ R+ ++L AA++ + LRL + + +G + +
Sbjct: 179 ALALLAAAVGAAA-FQLAQSLAVLRLETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLAS 237
Query: 429 MITTDANALQQISQQLHG-----LWSAPFRITLSMVLLYQQLGVASLLGSLMLVLMVPLQ 483
A + QI + L G L S F + L++ L++ +L+ + ++ + +
Sbjct: 238 R----AMGISQIRRILSGSTLTTLLSGIFAL-LNLGLMFYYSWKLALVAVALALVAIAV- 291
Query: 484 TFIISKMRKLTKEG-LQWTDRRVS-LTNEILA-------AMDTVKCYA-WEKSFQSRVQS 533
++ + ++ KE L ++S LT +++ A + +A W K F + +
Sbjct: 292 -TLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKL 350
Query: 534 IRDDELSWFRKAQFLSAFNSFILNSIPVVVTVVSFGTFTLLGGD--------LTPARAFT 585
ELS R L+ FN+ +PV+ + F L G L AF
Sbjct: 351 ----ELSAQRIENLLTVFNA----VLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFG 402
Query: 586 SLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILMPNPPLEPELPAVSIKN 645
S S AV + L N L ++ +R + +L A + A+ +
Sbjct: 403 SFSG-AVTQ-----LSNTLISILAVIPLWERAKPILEALPEVDEAKTDPGKLSGAIEVDR 456
Query: 646 GNFSWDSKSP-TLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGT 704
F + P L +++L I G VAIVG +G GK++L+ +LG P G+
Sbjct: 457 VTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPES-------GS 509
Query: 705 VAY-------------------VPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQH 745
V Y V Q + + ++ +NI G+ + W+ ++ L
Sbjct: 510 VFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAE 569
Query: 746 DLDLLPDRDLTEIGERGVNISGGQKQRVSMARA------------------------VFN 781
D+ +P T I E G +SGGQ+QR+ +ARA V
Sbjct: 570 DIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSE 629
Query: 782 SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLME 838
S E L+ TRI++ ++L + + DRI ++ G + ++G+++EL LF +L
Sbjct: 630 SL--ERLKV-TRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAREGLFAQLAR 683
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 93.3 bits (232), Expect = 6e-21
Identities = 63/234 (26%), Positives = 107/234 (45%), Gaps = 39/234 (16%)
Query: 641 VSIKNGNFSWDSKSP-TLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASV 699
++ ++ F + P L NI+L I G +V IVG +G GK++L + P ++ V
Sbjct: 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVP-ENGRV 59
Query: 700 VI-------------RGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHD 746
++ R V V Q + +FN ++R NI + A HD
Sbjct: 60 LVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHD 119
Query: 747 LDL-LPDRDLTEIGERGVNISGGQKQRVSMARAVFN-------------------SCIKE 786
LP+ T +GE+G +SGGQ+QR+++ARA+ + I
Sbjct: 120 FISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMR 179
Query: 787 ELR----GKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKL 836
+ G+T I++ ++L + + DRII++ +G I E+GS +EL L+ L
Sbjct: 180 NMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYL 233
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 94.3 bits (235), Expect = 7e-20
Identities = 111/432 (25%), Positives = 187/432 (43%), Gaps = 52/432 (12%)
Query: 452 FRITLSMVLLYQQLGVASLLGSLMLVLMVPLQTFIISKMRKLTKEGLQWTDRRV-SLTNE 510
I+L V+L++ G L +L+ V++ L T I+S R + + D + +
Sbjct: 68 VEISLVAVILWRVYGWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAID 127
Query: 511 ILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSIPVVVTVVSFGT 570
L +TVK + E+ R D L + KA + +LN +
Sbjct: 128 SLLNFETVKYFGNEEYEAVRY----DHALETYEKAAIKVHVSLLVLNFGQTAIFSTGLRV 183
Query: 571 FTLLGGDLTPARAFTSLSLFAV------LRFPLNMLPNLLSQVVNANVSLQRLEELLLAE 624
+ T L V L PLN L ++ A ++++ +LL E
Sbjct: 184 MMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVE 243
Query: 625 -ERILMPN-PPLEP-ELPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKT 681
E P+ PPL P L AV+ N +F++D + P L+ I+ IP+G VAIVG +G GK
Sbjct: 244 AEVSDAPDAPPLWPVRLGAVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGK- 302
Query: 682 SLVSAMLGELPPLKDASVVI-------------RGTVAYVPQISWIFNATLRKNILFGSE 728
S + +L + S+ I R + VPQ + +FN T+ NI +G
Sbjct: 303 STILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRP 362
Query: 729 FDPA-KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF------- 780
A + + + + + LP+ T +GERG+ +SGG+KQRV++AR +
Sbjct: 363 DATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILI 422
Query: 781 ----------------NSCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFE 824
+ ++E G+T +++ ++L + D II++ G I E G+ E
Sbjct: 423 LDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHE 482
Query: 825 ELSKHGRLFQKL 836
EL G L+ ++
Sbjct: 483 ELLAAGGLYAEM 494
|
Length = 497 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 93.9 bits (234), Expect = 2e-19
Identities = 89/339 (26%), Positives = 157/339 (46%), Gaps = 67/339 (19%)
Query: 546 QFLSAFN-SFIL--NSIPVVVTVVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPN 602
Q +++ +F+L S P V+ ++ GT T++ F+S+ A++R PL L N
Sbjct: 256 QLIASLALAFVLYAASFPSVMDTLTAGTITVV---------FSSM--IALMR-PLKSLTN 303
Query: 603 LLSQVVNANVSLQRLEELLLAEERILMPNPPLEPELPAVSIKNGNFSWDSK-SPTLSNIN 661
+ +Q + Q L +L E+ +E + +N F++ K P L NIN
Sbjct: 304 VNAQFQRGMAACQTLFAILDLEQEKDEGKRVIERAKGDIEFRNVTFTYPGKEVPALRNIN 363
Query: 662 LDIPVGSLVAIVGGTGEGKTSLVS-------AMLGEL----PPLKDASVV-IRGTVAYVP 709
IP G VA+VG +G GK+++ + GE+ L+D ++ +R VA V
Sbjct: 364 FKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVS 423
Query: 710 QISWIFNATLRKNILFGSE--------FDPAKYWKTVD-VSALQHDLDLLPDRDLTEIGE 760
Q +FN T+ NI + + A+ +D ++ + + LD T IGE
Sbjct: 424 QNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLD-------TVIGE 476
Query: 761 RGVNISGGQKQRVSMARAVFNSC-------------------IK---EELR-GKTRILVT 797
GV +SGGQ+QR+++ARA+ I+ +EL+ +T +++
Sbjct: 477 NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIA 536
Query: 798 NQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKL 836
++L + D I++V +G I E G+ EL ++ +L
Sbjct: 537 HRLSTIEKADEILVVEDGEIVERGTHAELLAQNGVYAQL 575
|
Length = 582 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 92.1 bits (229), Expect = 6e-19
Identities = 72/265 (27%), Positives = 122/265 (46%), Gaps = 49/265 (18%)
Query: 617 LEELLLAEERI--LMPNP---------PLEPELPAVSIKNGNFSWDSKSPTLSNINLDIP 665
L++ ++A ER+ LM P PL+ + I N +F++ + L NINL +P
Sbjct: 308 LQQAVVAGERVFELMDGPRQQYGNDDRPLQSG--RIDIDNVSFAYRDDNLVLQNINLSVP 365
Query: 666 VGSLVAIVGGTGEGKTSLVSAMLGELP-----------PLKDAS-VVIRGTVAYVPQISW 713
VA+VG TG GK++L S ++G P PL S V+R VA V Q
Sbjct: 366 SRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPV 425
Query: 714 IFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRV 773
+ T N+ G + + W+ ++ L LPD T +GE+G N+S GQKQ +
Sbjct: 426 VLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLL 485
Query: 774 SMARAVFNS-------------------CIKEELRG----KTRILVTNQLHFLPHVDRII 810
++AR + + I++ L T +++ ++L + D I+
Sbjct: 486 ALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTIL 545
Query: 811 LVSEGMIKEEGSFEEL-SKHGRLFQ 834
++ G E+G+ ++L + GR +Q
Sbjct: 546 VLHRGQAVEQGTHQQLLAAQGRYWQ 570
|
Length = 592 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 85.2 bits (212), Expect = 2e-18
Identities = 61/219 (27%), Positives = 94/219 (42%), Gaps = 54/219 (24%)
Query: 642 SIKNGNFSW-DSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP------- 693
+KN +FS+ D P L +I+L I G V IVG G GK++L+ + G L P
Sbjct: 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60
Query: 694 ----LKDASVV-IRGTVAYVPQI--SWIFNATLRKNILFGSE---FDPAKYWKTVDVSAL 743
L S+ +R V V Q F T+ + + FG E + + V+ +
Sbjct: 61 DGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALE 120
Query: 744 QHDLDLLPDRDLTEIGERGVNISGGQKQRVSMA------------------------RAV 779
L+ L DR +SGGQKQRV++A R +
Sbjct: 121 LVGLEGLRDRSPFT-------LSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRREL 173
Query: 780 FNSCIKEELR--GKTRILVTNQLHFL-PHVDRIILVSEG 815
+ ++L+ GKT I+VT+ L L DR+I++ +G
Sbjct: 174 LE--LLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 90.9 bits (226), Expect = 2e-18
Identities = 89/403 (22%), Positives = 164/403 (40%), Gaps = 77/403 (19%)
Query: 919 PWVIMILF--ACYLSTEVLRISSSTWLSFWTDQST-----SKNYNPGFYIAIY--TILAF 969
PW+I E+ + F+T + K P AI+ +L+
Sbjct: 161 PWLISAFVFLTLSSLGEMF-------IPFYTGRVIDTLGGDKGP-PALASAIFFMCLLSI 212
Query: 970 GQ-VTVTLLNSYWLIISSLRAAKRLHDSMLNSILRAPMLFFHTNPIGRVINRFSRDLGDI 1028
V+ L + + R R+ + + S+LR + FF N G + +R S D +
Sbjct: 213 ASSVSAGLRGGSFNYTMA-RINLRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTM 271
Query: 1029 DRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAI-------MPLLILFYAAY-LYYQS 1080
R+++ VN+ L L+ L+G + +S + +PL+ L + YQ
Sbjct: 272 SRSLSLNVNVL---LRNLVMLLGLLGFMLWLS-PRLTMVTLINLPLVFLAEKVFGKRYQL 327
Query: 1081 TAREVKRLDSITRSPVYAQFGEALNGLSTIRAF-----------KAYDRMAKINGKSMDN 1129
+ E++ +++ ++ A+ EAL+G+ T+R+F +A + ++N +
Sbjct: 328 LSEELQ--EAVAKANQVAE--EALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALA 383
Query: 1130 NIRFTLANTSSNRWLTIRLETLGGIMIWLIATFAVMQNGRAENQVAFASTMGLLLS---Y 1186
+ LG ++ L+ + +V + G L+S Y
Sbjct: 384 YAGYLWTT-----------SVLGMLIQVLVLYYGGQL--VLTGKV----SSGNLVSFLLY 426
Query: 1187 TLNITNLLSGVLRQASRAENSLNAVERVGTYIDLP--SEAPGMVESNRPPPAWPSSGSIK 1244
+ + + S ++ A E+V Y+D G + P G I+
Sbjct: 427 QEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGTL---APLNL---EGLIE 480
Query: 1245 FEDVVLRY--RPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSS 1285
F+DV Y RP++P VL GL+FT+ P E V +VG +G+GKS+
Sbjct: 481 FQDVSFSYPNRPDVP-VLKGLTFTLHPGEVVALVGPSGSGKST 522
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 89.8 bits (223), Expect = 3e-18
Identities = 72/338 (21%), Positives = 142/338 (42%), Gaps = 36/338 (10%)
Query: 977 LNSYWLIISSLRAAKRLHDSMLNSILRAPMLFFHTNPIGRVINRFSRDLGDIDRNVASFV 1036
+++Y L S + + + M +L P+ FF P G +++R + D +
Sbjct: 73 VSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAF 132
Query: 1037 NMFMNQLWQLLSTFVLIGIVS---TISLWAIMPLLILFYAAYLYYQSTAREVKRLDSITR 1093
+ + + ++ F+++ S T+ + ++P+L + KRL I++
Sbjct: 133 IVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRV---------SKRLRRISK 183
Query: 1094 SPVYAQ------FGEALNGLSTIRAFKAYD----RMAKINGKSMDNNIRFTLANTSSNRW 1143
+ E L G ++ F R ++ ++ ++ T A S +
Sbjct: 184 EIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSA-GSISSP 242
Query: 1144 LTIRLETLGGIMIWLIATF-AVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQAS 1202
+T + +L ++ IA F A + A + AF + M L+ ++TN+ +
Sbjct: 243 ITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNV-------NA 295
Query: 1203 RAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSGSIKFEDVVLRYRPELPPVLHG 1262
+ L A E + T +D P E R + G ++F +V RY P L
Sbjct: 296 PMQRGLAAAESLFTLLDSPPEKD---TGTRAIER--ARGDVEFRNVTFRYPGRDRPALDS 350
Query: 1263 LSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
+S + P E V +VGR+G+GKS+++N + R E + G+
Sbjct: 351 ISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQ 388
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 88.9 bits (221), Expect = 6e-18
Identities = 140/599 (23%), Positives = 248/599 (41%), Gaps = 115/599 (19%)
Query: 330 WLGGLFKIGNDL---SQFVGPVLLNHLLQSMQRGDPAWIGYIYAFLIFVGVSFGVLTEAQ 386
LG L + N L + F P+L ++ ++ + L+ FG+
Sbjct: 19 RLGILLAVANVLLAAATFAEPILFGRIIDAISGKGDIFP------LLAAWAGFGLFNIIA 72
Query: 387 YFQNVW------RVGFRLRSTLVAAIFRKTLRLT---HEARKGFPSGKVTNMITTDANAL 437
V R+ R R ++ F + ++L H R SG+ + L
Sbjct: 73 G---VLVARHADRLAHRRRLAVLTEYFERIIQLPLAWHSQRG---SGRALH-------TL 119
Query: 438 QQISQQLHGLWSAPFRITLS-----MVLLYQQLGVASLLGSLMLVLMVPLQTFIIS-KMR 491
+ + L GLW R L+ +VLL L + L +++VL + + T I + MR
Sbjct: 120 LRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVLGI-VYTLITTLVMR 178
Query: 492 KLTKEGLQWTDRRVSLTNEILA--AMDTVKCYAWEKSF---QSRVQSIRD--DE------ 538
K TK+G V L D + + +S+ ++ Q++RD D
Sbjct: 179 K-TKDG----QAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQM 233
Query: 539 --LSWFRKAQFLSAFNSFILNSIPVVVTVVSFGTFTLLGGDLTPAR--AFTSLSLFAVLR 594
LSW+ A L+ S I ++ ++ G + G L AF + + R
Sbjct: 234 PVLSWWALASVLNRAASTI-----TMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGR 288
Query: 595 FPLNMLPNLLSQVVNANVSLQRLEELLLAEERILMPNPPLEPELP----AVSIKNGNFSW 650
L+ + ++QV A L+ E+ A + +PP +L AV + +FS+
Sbjct: 289 --LDQVVAFINQVFMAAPKLEEFFEVEDAVPDV--RDPPGAIDLGRVKGAVEFDDVSFSY 344
Query: 651 DSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGT------ 704
D+ + +++ + G VAIVG TG GK++L+ +L + + ++I GT
Sbjct: 345 DNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLI-NLLQRVFDPQSGRILIDGTDIRTVT 403
Query: 705 -------VAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLL---PDRD 754
+A V Q + +FN ++ NI G A + + D + PD
Sbjct: 404 RASLRRNIAVVFQDAGLFNRSIEDNIRVGRP--DATDEEMRAAAERAQAHDFIERKPDGY 461
Query: 755 LTEIGERGVNISGGQKQRVSMARAVF-----------------------NSCIKEELRGK 791
T +GERG +SGG++QR+++ARA+ + + E ++G+
Sbjct: 462 DTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGR 521
Query: 792 TRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLMENAGKMEEMEERE 850
T ++ ++L + + DRI++ G + E GSF+EL G F L+ G ++E E R+
Sbjct: 522 TTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVARGGRFAALLRAQGMLQEDERRK 580
|
Length = 588 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 1e-17
Identities = 100/384 (26%), Positives = 169/384 (44%), Gaps = 69/384 (17%)
Query: 512 LAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSIPVVVT------V 565
L +++T+K E F SR + L+ ++ L+ IL +P ++T +
Sbjct: 339 LQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQ----ILGVLPTLLTSLNSALI 394
Query: 566 VSFGTFTLLGGDLTPAR--AFTSLSLFAVLRF--PLNMLPNLLSQVVNANVSLQRLEELL 621
+ G ++ G LT AF SL + F P+N L + L RL+++L
Sbjct: 395 LVVGGLRVMEGQLTIGMLVAFQSL----MSSFLEPVNNLVGFGGTLQELEGDLNRLDDVL 450
Query: 622 -----LAEERILMPNPPLEPELP---AVSIKNGNFSWD-SKSPTLSNINLDIPVGSLVAI 672
E P EP V ++N F + + P + N +L + G VA+
Sbjct: 451 RNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVAL 510
Query: 673 VGGTGEGKTS---LVSAML----GEL----PPLKD-ASVVIRGTVAYVPQISWIFNATLR 720
VGG+G GK++ LV+ + GE+ P ++ V+ +VA V Q ++F T+R
Sbjct: 511 VGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVR 570
Query: 721 KNILFGSEFDPAKYWKTVDVSALQ----HDLDL-LPDRDLTEIGERGVNISGGQKQRVSM 775
N+ + +DP + V A + HD+ P E+ E G N+SGGQ+QR+ +
Sbjct: 571 DNL---TLWDPTIPDADL-VRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEI 626
Query: 776 ARAVFNS-------------------CIKEEL--RGKTRILVTNQLHFLPHVDRIILVSE 814
ARA+ + I + L RG T I+V ++L + D II++
Sbjct: 627 ARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIRDCDEIIVLER 686
Query: 815 GMIKEEGSFEELSKHGRLFQKLME 838
G + + G+ EEL G + +L+
Sbjct: 687 GKVVQRGTHEELWAVGGAYARLIR 710
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 87.9 bits (218), Expect = 2e-17
Identities = 108/499 (21%), Positives = 224/499 (44%), Gaps = 74/499 (14%)
Query: 393 RVGFRLRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQ-ISQQLH-GLWSA 450
R+ R+R L FR LR +G++T+ +++D + + +S ++ L +
Sbjct: 231 RINLRIREDL----FRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRN- 285
Query: 451 PFRITLSMVLLYQQLGVASLLGSLMLVLMVPLQTFIISKM-----RKLTKEGLQWTDRRV 505
+ + + LL L ++ L +++ ++ +PL F+ K+ + L++E + +
Sbjct: 286 ---LVMLLGLLGFMLWLSPRL-TMVTLINLPL-VFLAEKVFGKRYQLLSEELQEAVAKAN 340
Query: 506 SLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFI--LNSIPVVV 563
+ E L+ M TV+ +A E+ SR + ++ L ++ A + + + + V
Sbjct: 341 QVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLGMLIQV 400
Query: 564 TVVSFGTFTLLGGDLTPARAFTSL----SLFAVLRFPLNMLPNLLSQVVNANVSLQRLEE 619
V+ +G +L G ++ + L L +R + ++ V + +++ E
Sbjct: 401 LVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGAS----EKVFE 456
Query: 620 LLLAEERI-----LMPNPPLEPELPAVSIKNGNFSWDSKS--PTLSNINLDIPVGSLVAI 672
L + I L P LE + ++ +FS+ ++ P L + + G +VA+
Sbjct: 457 YLDRKPNIPLTGTLAP-LNLEGL---IEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVAL 512
Query: 673 VGGTGEGKTSLVSAML--------GEL----PPLKDAS-VVIRGTVAYVPQISWIFNATL 719
VG +G GK++ V+A+L G++ PL + VA V Q +F+ ++
Sbjct: 513 VGPSGSGKST-VAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSV 571
Query: 720 RKNILFGSEFDPAKYWKTVDVSALQHD-LDLLPDRDLTEIGERGVNISGGQKQRVSMARA 778
R+NI +G P + +A HD + P+ TE+GE+G +SGGQKQR+++ARA
Sbjct: 572 RENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARA 631
Query: 779 -VFNSCI--------------------KEELRGKTRILVTNQLHFLPHVDRIILVSEGMI 817
V + +T +L+ ++L + D+I+++ +G +
Sbjct: 632 LVRKPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLSTVERADQILVLKKGSV 691
Query: 818 KEEGSFEELSKHGRLFQKL 836
E G+ ++L + ++ L
Sbjct: 692 VEMGTHKQLMEDQGCYKHL 710
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 2e-17
Identities = 45/204 (22%), Positives = 77/204 (37%), Gaps = 79/204 (38%)
Query: 651 DSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI--------- 701
++ P L N++ I G +AI+G +G GK++L +LG L P V +
Sbjct: 12 GAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTS-GRVRLDGADISQWD 70
Query: 702 ----RGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTE 757
V Y+PQ +F+ ++ +NIL
Sbjct: 71 PNELGDHVGYLPQDDELFSGSIAENIL--------------------------------- 97
Query: 758 IGERGVNISGGQKQRVSMARAVF-----------------------NSCIKE-ELRGKTR 793
SGGQ+QR+ +ARA++ N I + G TR
Sbjct: 98 --------SGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATR 149
Query: 794 ILVTNQLHFLPHVDRIILVSEGMI 817
I++ ++ L DRI+++ +G +
Sbjct: 150 IVIAHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 83.5 bits (207), Expect = 3e-17
Identities = 59/288 (20%), Positives = 113/288 (39%), Gaps = 50/288 (17%)
Query: 637 ELPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP--- 693
+ + ++N + L ++ ++ G + ++G G GKT+L+ + G L P
Sbjct: 1 MIEVIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSG 60
Query: 694 --------LKDASVVIRGTVAYVPQISWIF-NATLRKNI-LFGSEFDPAKYWKTVDVSAL 743
+ +R + YVPQ ++ T+R+N+ F + +K + L
Sbjct: 61 EILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEEL 120
Query: 744 QHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFNSC-------------------I 784
L + ++ +SGG KQR+S+A A+ + I
Sbjct: 121 LELFGLEDKAN-----KKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREI 175
Query: 785 KEELR-----GKTRILVTNQLHFLPHV----DRIILVSEGMIKEEGSFEELSKH--GRLF 833
E LR G IL++ H L DR+I++++G I EG+ EEL + G+
Sbjct: 176 WELLRELAKEGGVTILLST--HILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGV 233
Query: 834 QKLMENAGKMEEMEEREEKDDSINSNQEVSKPVANRAVQVNEFPKNES 881
+L ++ E+ E + E+ + + V++ E
Sbjct: 234 IELEPERLELAELLEGLKLVKGEEELAEILEALLEEGVKIESIEVKEP 281
|
Length = 293 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 4e-17
Identities = 60/236 (25%), Positives = 110/236 (46%), Gaps = 45/236 (19%)
Query: 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDAS 698
P + ++N S+ ++ P L +I+L + G + A++G G GK++L+ A+LG L P
Sbjct: 3 PMIEVENLTVSYGNR-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSS-GE 60
Query: 699 VVIRG----------TVAYVPQ---ISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQH 745
+ I G + YVPQ + F T++ +L G + +++ ++ +
Sbjct: 61 IKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGR-YGKKGWFRRLNKKDKEK 119
Query: 746 DLDLLPDRDLTEIGERGV-NISGGQKQRVSMARAVFN----------------------- 781
+ L + ++ +R + +SGGQKQRV +ARA+
Sbjct: 120 VDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIY 179
Query: 782 SCIKEELR--GKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSKHGRLFQ 834
+K ELR GKT ++VT+ L + + DR+I ++ +I G EE+ L +
Sbjct: 180 DLLK-ELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLIA-SGPPEEVLTEENLEK 233
|
Length = 254 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 8e-17
Identities = 56/242 (23%), Positives = 99/242 (40%), Gaps = 51/242 (21%)
Query: 638 LPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP---- 693
L + +N +F + + L +++L+I G V ++G G GK++L+ + G L P
Sbjct: 1 LRMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGE 60
Query: 694 ---------LKDASVVIRGTVAYVPQ--ISWIFNATLRKNILFGSEF---DPAKYWKTVD 739
+ + + +R V V Q +F T+ + FG E + + V
Sbjct: 61 VLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVA 120
Query: 740 VSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAV-------------------- 779
+ L+ L DR N+SGGQKQRV++A +
Sbjct: 121 EALELVGLEELLDRPPF-------NLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKG 173
Query: 780 ---FNSCIKE--ELRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSKHGRLF 833
+K+ E GKT I+VT+ L + + DR++++ +G I +G E+ L
Sbjct: 174 RRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDAELL 233
Query: 834 QK 835
Sbjct: 234 LA 235
|
Length = 235 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 4e-16
Identities = 48/216 (22%), Positives = 90/216 (41%), Gaps = 73/216 (33%)
Query: 641 VSIKNGNFSW-DSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPL----- 694
+SI N +FS+ + + L N++L++ G +A++G +G GK++L+ + G+L P
Sbjct: 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60
Query: 695 ---KDASVV---IRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLD 748
S + + ++ + Q ++F+ TLR N+
Sbjct: 61 LDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNL------------------------- 95
Query: 749 LLPDRDLTEIGERGVNISGGQKQRVSMARAVFN-----------------------SCIK 785
G SGG++QR+++AR + S I
Sbjct: 96 -------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIF 142
Query: 786 EELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEG 821
E L+ KT I +T+ L + H+D+I+ + G I +G
Sbjct: 143 EVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 78.3 bits (194), Expect = 4e-16
Identities = 56/215 (26%), Positives = 100/215 (46%), Gaps = 44/215 (20%)
Query: 642 SIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI 701
+++ S+ P L +++ ++ G +AIVG G GK++L+ A+LG L P S+ +
Sbjct: 1 EVEDLTVSYGGH-PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTS-GSIRV 58
Query: 702 RGT--------VAYVPQ---ISWIFNATLRKNILFG--SEFDPAKYWKTVDVSALQHDLD 748
G + YVPQ I F ++R +L G + D + + L+
Sbjct: 59 FGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALE 118
Query: 749 LLPDRDLTEIGERGV-NISGGQKQRVSMARAV------------FNSC----------IK 785
+ L+E+ +R + +SGGQ+QRV +ARA+ F +
Sbjct: 119 RV---GLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELL 175
Query: 786 EELR--GKTRILVTNQLH-FLPHVDRIILVSEGMI 817
ELR G T ++VT+ L L + DR++L++ ++
Sbjct: 176 RELRREGMTILVVTHDLGLVLEYFDRVLLLNRTVV 210
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 81.8 bits (203), Expect = 1e-15
Identities = 51/201 (25%), Positives = 90/201 (44%), Gaps = 30/201 (14%)
Query: 1102 EALNGLSTIRAFKAYDRMAK----INGKSMDNNIRF-TLANTSSNRWLTIRLETLGGIMI 1156
E+L+GL TI+A A R + + ++ L+N ++N ++ L + I
Sbjct: 329 ESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATN--FAQFIQQLVSVAI 386
Query: 1157 WLIATFAVMQNGRAENQVAFASTMG------LLLSYTLNITNLLSGVLRQASRAENSLNA 1210
++ + + + ++ TMG +L L L+G+L +R + + A
Sbjct: 387 VVVGVYLIS-----DGEL----TMGGLIACVMLSGRALAPLGQLAGLL---TRYQQAKTA 434
Query: 1211 VERVGTYIDLPSEAPGMVESNRPPPAWPS-SGSIKFEDVVLRYRPELPPVLHGLSFTVSP 1269
++ + + LP E P P G I+F +V Y + P L +S T+ P
Sbjct: 435 LQSLDELMQLPVERPE----GTRFLHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRP 490
Query: 1270 SEKVGIVGRTGAGKSSMLNAL 1290
EKV I+GR G+GKS++L L
Sbjct: 491 GEKVAIIGRIGSGKSTLLKLL 511
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 77.5 bits (192), Expect = 1e-15
Identities = 58/238 (24%), Positives = 101/238 (42%), Gaps = 66/238 (27%)
Query: 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV 700
+ ++ S+ + L ++LD+ G ++AI+G +G GK++L+ ++G L P V+
Sbjct: 1 IELRGLTKSFGGR-TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDS-GEVL 58
Query: 701 IRGT----------------VAYVPQISWIFNA-TLRKNILFG----SEFDPAKYWKTV- 738
I G + + Q +F++ T+ +N+ F + + + V
Sbjct: 59 IDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVL 118
Query: 739 ---DVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARA----------------- 778
+ L+ DL P +SGG K+RV++ARA
Sbjct: 119 EKLEAVGLRGAEDLYPA-----------ELSGGMKKRVALARALALDPELLLYDEPTAGL 167
Query: 779 ------VFNSCI---KEELRGKTRILVTNQLHF-LPHVDRIILVSEGMIKEEGSFEEL 826
V + I K+EL G T I+VT+ L DRI ++ +G I EG+ EEL
Sbjct: 168 DPIASGVIDDLIRSLKKEL-GLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEEL 224
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 1e-15
Identities = 63/215 (29%), Positives = 105/215 (48%), Gaps = 51/215 (23%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGT-VAYVP----QI 711
L ++NL++P GSLVA++G +G GK++L+ + G P + + G V +I
Sbjct: 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQP-DSGRIRLNGQDATRVHARDRKI 74
Query: 712 SWIF-------NATLRKNILFGSEF---DPAKYWKTVDVSALQHDLDLLPDRDLTEIGER 761
++F + T+R NI FG E AK V+ +LL L +G+R
Sbjct: 75 GFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVE--------ELLELVQLEGLGDR 126
Query: 762 GVN-ISGGQKQRVSMARAV---------------FNSCIKEELRG----------KTRIL 795
N +SGGQ+QRV++ARA+ ++ +++ELR T +
Sbjct: 127 YPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVF 186
Query: 796 VT-NQLHFLPHVDRIILVSEGMIKEEGSFEELSKH 829
VT +Q + DRI+++S G I++ GS +E+ H
Sbjct: 187 VTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 74.7 bits (185), Expect = 3e-15
Identities = 25/58 (43%), Positives = 36/58 (62%)
Query: 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
I+F++V Y PVL +S T+ P EKV IVG +G+GKS++L L R+ + GE
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGE 58
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 4e-15
Identities = 98/392 (25%), Positives = 162/392 (41%), Gaps = 64/392 (16%)
Query: 935 LRISSSTWLS------------FWTDQSTSKNYNPGFYIAIYTILAFGQVTVTLLNSYWL 982
L I+++ LS F D S N F + + +LA G L + WL
Sbjct: 27 LLITAAATLSLPYAVRLMIDHGFSKDSSGLLNRYFAFLLVVALVLALGTAARFYLVT-WL 85
Query: 983 ---IISSLRAAKRLHDSMLNSILRAPMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMF 1039
+++ +R + + +++ L FF N G V++R + D + + S ++M
Sbjct: 86 GERVVADIR--RAVFAHLIS--LSPS--FFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMA 139
Query: 1040 MNQLWQLLSTFVLIGIVS---TISLWAIMPLLILFYAAYLYYQSTAREVKRL-----DSI 1091
+ + +++ I S T + +PL++L + R V++L D I
Sbjct: 140 LRNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLF------GRRVRKLSRESQDRI 193
Query: 1092 TRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETL 1151
+ YA GE L + T++AF D G +++ + LT + L
Sbjct: 194 ADAGSYA--GETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVL 251
Query: 1152 --GGI--MIWLIATFAVMQNGRAENQVAFASTMGLLLSYTLNI---TNLLSGVLRQASRA 1204
G I ++W + V+ + A T+G + Y + + LS V + RA
Sbjct: 252 VFGAIVGVLW-VGAHDVIAGKMS------AGTLGQFVFYAVMVAGSIGTLSEVWGELQRA 304
Query: 1205 ENSLNAVERVGTYIDLPSEAPGMVESNRP--PPAWPSSGSIKFEDVVLRY--RPELPPVL 1260
A ER+ I+L P + P P P G I+FE V Y RP+ P L
Sbjct: 305 AG---AAERL---IELLQAEPDIKAPAHPKTLPV-PLRGEIEFEQVNFAYPARPDQP-AL 356
Query: 1261 HGLSFTVSPSEKVGIVGRTGAGKSSMLNALFR 1292
GL+ TV P E V +VG +GAGKS++ L R
Sbjct: 357 DGLNLTVRPGETVALVGPSGAGKSTLFQLLLR 388
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 76.4 bits (189), Expect = 4e-15
Identities = 60/236 (25%), Positives = 102/236 (43%), Gaps = 60/236 (25%)
Query: 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDAS 698
+ ++N +F + K P L +++ IP G + I+G G GK++L+ + G L P K
Sbjct: 1 MMLEVENLSFGYGGK-PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKP-KSGE 58
Query: 699 VVIRG-------------TVAYVPQISWI-FNATLRKNILFG-----SEFDPAKYWKTVD 739
V++ G +AYVPQ F T+ + +L G F D
Sbjct: 59 VLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGR---PSKED 115
Query: 740 VSALQHDLDLLPDRDLTEIGERGVN-ISGGQKQRVSMARAVFNSC--------------- 783
++ L+LL L + +R V+ +SGG++QRV +ARA+
Sbjct: 116 EEIVEEALELL---GLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIA 172
Query: 784 --------IKE--ELRGKTRILVTNQLHFLPHV----DRIILVSEGMIKEEGSFEE 825
+++ +G T ++V LH L D +IL+ +G I +G+ EE
Sbjct: 173 HQIEVLELLRDLNREKGLTVVMV---LHDLNLAARYADHLILLKDGKIVAQGTPEE 225
|
Length = 258 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 9e-15
Identities = 78/383 (20%), Positives = 141/383 (36%), Gaps = 31/383 (8%)
Query: 921 VIMILFACYLSTEVLRISSSTWLSFWTDQSTSKNY--NPGFYIAIYTILAFGQVTVTLLN 978
VI L A LS + I+ + L+ + + + + I + + L
Sbjct: 3 VISALLAV-LSG-IAIIAQAALLADILTKLIEGQLFQSLLPLLILLLIALVLRAFLAWLR 60
Query: 979 SYWLIISSLRAAKRLHDSMLNSILRAPMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNM 1038
++ + L +L+ + + F P G + ++ A ++
Sbjct: 61 ERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQ 120
Query: 1039 FMNQLWQLLSTFVLIGIVSTIS---LWAIMPLLILFYAAYLYYQSTAREVKRLDSITRSP 1095
L + I + + L PL+ LF + + K+ ++ R
Sbjct: 121 MFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMIL-VGLAAKDASEKQFSALAR-- 177
Query: 1096 VYAQFGEALNGLSTIRAFKAYDRMAK-INGKSMDNNIR----FTLANTSSNRWLTIRLET 1150
+ F + L GL T+RAF + + I S D +A SS LE
Sbjct: 178 LSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSS-----AVLEF 232
Query: 1151 LGGIMIWLIATFAVMQNGRAENQVAFASTMGLLLS--YTLNITNLLSGV-LRQASRAENS 1207
+ I L+A + + + FA L+L+ + + +L S A A
Sbjct: 233 FAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEA--- 289
Query: 1208 LNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSGSIKFEDVVLRYRPELPPVLHGLSFTV 1267
A +++ T ++ P PG E + A I E++ RY P+ P L L+ T+
Sbjct: 290 --AADKLFTLLESPVATPGSGE--KAEVANEPPIEISLENLSFRY-PDGKPALSDLNLTI 344
Query: 1268 SPSEKVGIVGRTGAGKSSMLNAL 1290
+ +VG +GAGKS++LN L
Sbjct: 345 KAGQLTALVGASGAGKSTLLNLL 367
|
Length = 559 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 75.3 bits (186), Expect = 1e-14
Identities = 66/242 (27%), Positives = 111/242 (45%), Gaps = 53/242 (21%)
Query: 633 PLEPELPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELP 692
P + ++ S+ + L ++LD+P G ++AI+GG+G GK++L+ +LG L
Sbjct: 1 MSASPEPLIEVRGVTKSFGDR-VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR 59
Query: 693 PLKDASVVIRGTVAYVPQISWIFNATLRKNI--LF--GSEFDPAKYWKTVDVSALQHDLD 748
P K ++I G +PQ+S +RK + LF G+ F ++ V +H
Sbjct: 60 PDK-GEILIDGE--DIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREH--T 114
Query: 749 LLPDRDLTEI--------GERGVN-------ISGGQKQRVSMARA--------------- 778
LP+ + E+ G RG +SGG ++RV++ARA
Sbjct: 115 KLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTS 174
Query: 779 --------VFNSCIKEELR---GKTRILVTNQLH-FLPHVDRIILVSEGMIKEEGSFEEL 826
V + I+ EL G T I+VT+ L L DR+ ++++G + EG+ EEL
Sbjct: 175 GLDPISAGVIDELIR-ELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEEL 233
Query: 827 SK 828
Sbjct: 234 LA 235
|
Length = 263 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 73.7 bits (182), Expect = 2e-14
Identities = 60/219 (27%), Positives = 97/219 (44%), Gaps = 50/219 (22%)
Query: 654 SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGT--------- 704
S L ++L++P G + ++G G GKT+L+ ++G LP K S+ + G
Sbjct: 13 SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPV-KSGSIRLDGEDITKLPPHE 71
Query: 705 -----VAYVPQISWIFNA-TLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTE- 757
+AYVPQ IF T+ +N+L G P + K D +L P L E
Sbjct: 72 RARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPD-----EIYELFP--VLKEM 124
Query: 758 IGERGVNISGGQKQRVSMARAVFN----------------SCIKE---------ELRGKT 792
+G RG ++SGGQ+Q++++ARA+ S IK+ G
Sbjct: 125 LGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMA 184
Query: 793 RILVTNQLHFLPHV-DRIILVSEGMIKEEGSFEELSKHG 830
+LV L F + DR ++ G + G+ +EL +
Sbjct: 185 ILLVEQYLDFARELADRYYVMERGRVVASGAGDELDEDK 223
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 5e-14
Identities = 88/399 (22%), Positives = 165/399 (41%), Gaps = 45/399 (11%)
Query: 921 VIMILFACYLSTEVLRISSSTWLSFWTDQSTSKNYNPGFYIAIYTILAFG-------QVT 973
++ I+ A + T ++ I+ S +L Q Y P + I++ G Q
Sbjct: 158 IVNIVIAAIIVT-LISIAGSYYL-----QKIIDTYIPHKMMGTLGIISIGLIIAYIIQQI 211
Query: 974 VTLLNSYWLIISSLRAAKRLHDSMLNSILRAPMLFFHTNPIGRVINRFSRDLGDIDRNVA 1033
++ + + L + R + + S + + PM FF T G +++RF+ ID +
Sbjct: 212 LSYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFTDASSIIDALAS 271
Query: 1034 SFVNMFMNQLWQLLSTFVLIGIVST----ISLWAIMPLLILFYAAYLYYQSTAREVKRLD 1089
+ +++F++ +W L+ + + + +SL +I ++ + + + +
Sbjct: 272 TILSLFLD-MWILVIVGLFLVRQNMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQAN 330
Query: 1090 SITRSPVYAQFGEALNGLSTIRAFKAYD-RMAKIN---GKSMDNNIRFTLANTSSNRWLT 1145
++ S + E LNG+ TI++ + R +KI+ G ++ + ++ A+
Sbjct: 331 AVLNSSII----EDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKA 386
Query: 1146 IRLETLGGIMIWLIATFAVMQNGRAENQVAFASTMGLLLSYTL----NITNLLSGVLRQA 1201
+ L +++W A VM+ Q+ T LLSY L NI NL L+ A
Sbjct: 387 VTKLILNVVILWTGAYL-VMRGKLTLGQLI---TFNALLSYFLTPLENIINLQPK-LQAA 441
Query: 1202 SRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSGSIKFEDVVLRYRPELPPVLH 1261
A N LN V V + E N +G I DV Y +L
Sbjct: 442 RVANNRLNEVYLVDSEF---INKKKRTELNNL------NGDIVINDVSYSYGYG-SNILS 491
Query: 1262 GLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
+S T+ + K IVG +G+GKS++ L + GE
Sbjct: 492 DISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGE 530
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 5e-14
Identities = 51/216 (23%), Positives = 98/216 (45%), Gaps = 40/216 (18%)
Query: 641 VSIKNGNFSWDSK--SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDAS 698
V +N F++ ++ + L +++ + G + A+VG +G GK+++V A+L +
Sbjct: 12 VKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVV-ALLENFYQPQGGQ 70
Query: 699 VVIRG-------------TVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQH 745
V++ G V+ V Q +F +L+ NI +G + + K A H
Sbjct: 71 VLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAH 130
Query: 746 D-LDLLPDRDLTEIGERGVNISGGQKQRVSMARA-VFNSCI------------------- 784
+ L TE+GE+G +SGGQKQRV++ARA + N +
Sbjct: 131 SFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQ 190
Query: 785 ---KEELRGKTRILVTNQLHFLPHVDRIILVSEGMI 817
+ +T +++ ++L + D+I+++ G I
Sbjct: 191 QALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 5e-14
Identities = 62/233 (26%), Positives = 108/233 (46%), Gaps = 37/233 (15%)
Query: 633 PLEPELPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAML---- 688
P V+I+ + + P L N+N + G ++ I G TG GK++L+S +
Sbjct: 308 PEGRGELDVNIRQFTYP-QTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFD 366
Query: 689 ---GELP----PLKDASV-VIRGTVAYVPQISWIFNATLRKNILFGS-EFDPAKYWKTVD 739
G++ PL + R +A V Q ++F+ T+ NI G + +
Sbjct: 367 VSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVAR 426
Query: 740 VSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFNSC---------------- 783
++++ D+ LP TE+GERGV +SGGQKQR+S+ARA+ +
Sbjct: 427 LASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRT 486
Query: 784 ---IKEELR----GKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKH 829
I LR G+T I+ ++L L I+++ G I + G+ ++L++
Sbjct: 487 EHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQ 539
|
Length = 569 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 71.3 bits (176), Expect = 1e-13
Identities = 55/215 (25%), Positives = 92/215 (42%), Gaps = 48/215 (22%)
Query: 653 KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGT-------- 704
KS L ++L +P G +VA++G G GKT+L+ ++G LPP + S+ G
Sbjct: 12 KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPP-RSGSIRFDGRDITGLPPH 70
Query: 705 ------VAYVPQISWIF-NATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTE 757
+ YVP+ IF T+ +N+L G+ + + L+ +L P L E
Sbjct: 71 ERARAGIGYVPEGRRIFPELTVEENLLLGAYARR----RAKRKARLERVYELFP--RLKE 124
Query: 758 I-GERGVNISGGQKQRVSMARA------------------------VFNSCIKEELRGKT 792
+ +SGG++Q +++ARA +F + + G T
Sbjct: 125 RRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVT 184
Query: 793 RILVTNQLHF-LPHVDRIILVSEGMIKEEGSFEEL 826
+LV F L DR ++ G + EG+ EL
Sbjct: 185 ILLVEQNARFALEIADRAYVLERGRVVLEGTAAEL 219
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 2e-13
Identities = 64/259 (24%), Positives = 107/259 (41%), Gaps = 37/259 (14%)
Query: 1055 IVSTISLWAIMPLLILFYAAYLYY-QSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAF 1113
+S + L PL+ +F + Q+ AR K+ +++R + F + L GL T++ F
Sbjct: 144 WISGLILLLTAPLIPIFMILIGWAAQAAAR--KQWAALSR--LSGHFLDRLRGLPTLKLF 199
Query: 1114 KAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGIMIWLIATFAV--------- 1164
A +S + T+ +R+ L ++ L AT +V
Sbjct: 200 GRAKAQAAAIRRSSEEYRERTMR--------VLRIAFLSSAVLELFATLSVALVAVYIGF 251
Query: 1165 -MQNGRAENQVAFASTMGLLLS--YTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLP 1221
+ G + LLL+ + L + L G A + A E + +D
Sbjct: 252 RLLAGDLDLATGL---FVLLLAPEFYLPLRQL--GAQYHARAD--GVAAAEALFAVLD-- 302
Query: 1222 SEAPGMVESNRPPPAWPSSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGA 1281
A + + P + S++F V + Y P P L +SFTV P E+V +VG +GA
Sbjct: 303 --AAPRPLAGKAPVTAAPAPSLEFSGVSVAY-PGRRPALRPVSFTVPPGERVALVGPSGA 359
Query: 1282 GKSSMLNALFRIVELERGE 1300
GKS++LN L V+ G
Sbjct: 360 GKSTLLNLLLGFVDPTEGS 378
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 3e-13
Identities = 53/299 (17%), Positives = 110/299 (36%), Gaps = 32/299 (10%)
Query: 1015 GRVINRFSRDLGDID----RNVASFVNMFMNQLWQLLSTFVL----IGIVSTISLWAIMP 1066
G ++NR D+ +D R +A V + + T L I + + L ++
Sbjct: 115 GDLLNRLVADVDALDNLYLRVIAPAVVAL---VLIAVVTIGLSFFSIPLALLLGLILLLL 171
Query: 1067 LLILFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDR-MAKINGK 1125
LLI+ Y + + R+ + +QF + + G + + F A D +
Sbjct: 172 LLIIPTLFYRAGRKFGAHLA----QGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEAT 227
Query: 1126 SMDNNIRFTLANTSSNRWLTIRLETLGGIMIWLIA--TFAVMQNGRAENQVAFASTMGLL 1183
+ A R+ + L I L+ + A + + LL
Sbjct: 228 EAS----WLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALL 283
Query: 1184 LSYTL--NITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSG 1241
+ + L G + + + + R+ D+ + P + + +
Sbjct: 284 VIFAALEAFEPLAPGAFQHLGQV---IASARRLN---DILDQKPEVTFPDEQTAT--TGQ 335
Query: 1242 SIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
+++ +V Y + L + T++ EKV I+GR+G+GKS++L L + ++G
Sbjct: 336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGS 394
|
Length = 573 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 6e-13
Identities = 83/349 (23%), Positives = 147/349 (42%), Gaps = 36/349 (10%)
Query: 966 ILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILRAPMLFFHTNPIGRVINRFSRDL 1025
+A + + L +Y + R L + +L P+ +F + +G + R R+L
Sbjct: 187 AVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-REL 245
Query: 1026 GDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTIS--LWAIMPLLILFYAAYLYYQSTAR 1083
I RN + + LL V + ++ S L ++ ++ YA +
Sbjct: 246 EQI-RNF--LTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGSLVCYALLSVFVG-PI 301
Query: 1084 EVKRLDSITRSPVYAQ--FGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSN 1141
KR++ A E++ G+ TI+A + N LA +
Sbjct: 302 LRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQF--------QNRWDRQLAAYVAA 353
Query: 1142 RWLTIRLETLGGIMIWLIA--TFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSG--- 1196
+ L + G I LI TFA++ A + A + G L+++ N+L+G
Sbjct: 354 SFRVTNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAF-----NMLAGRVT 408
Query: 1197 --VLRQAS---RAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSGSIKFEDVVLR 1251
VLR A + + A+ER+G ++ P+E + P G+I FE++ R
Sbjct: 409 QPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSAGLAALPELR----GAITFENIRFR 464
Query: 1252 YRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
Y P+ P VL L+ + P E +GIVG +G+GKS++ L R+ + G+
Sbjct: 465 YAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQ 513
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 8e-13
Identities = 58/220 (26%), Positives = 102/220 (46%), Gaps = 53/220 (24%)
Query: 655 PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLG-ELPPLKDASVVIRGT-VAYVP--- 709
L +++LDIP G LVA++G +G GKT+L+ + G E P +++ G VP
Sbjct: 16 VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERP--DSGTILFGGEDATDVPVQE 73
Query: 710 -QISWIF-------NATLRKNILFGSEFDPAKYWKTVD-----VSALQHDLDLLPDRDLT 756
+ ++F + T+ N+ FG P V L L L+ L
Sbjct: 74 RNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHEL---LKLV---QLD 127
Query: 757 EIGERGVN-ISGGQKQRVSMARAV---------------FNSCIKEELR----------G 790
+ +R +SGGQ+QRV++ARA+ ++ +++ELR
Sbjct: 128 WLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELH 187
Query: 791 KTRILVT-NQLHFLPHVDRIILVSEGMIKEEGSFEELSKH 829
T + VT +Q L DR++++++G I++ G+ +E+ H
Sbjct: 188 VTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDH 227
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 1e-12
Identities = 56/222 (25%), Positives = 98/222 (44%), Gaps = 62/222 (27%)
Query: 642 SIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI 701
I+N +FS+ + L +++LD+ G ++A+ G G GKT+L + G + S+++
Sbjct: 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKE-SSGSILL 59
Query: 702 ----------RGTVAYVPQIS--WIFNATLRKNILFGSEFDPAKYW------KTVDVSAL 743
R ++ YV Q +F ++R+ +L G + A K +D+ AL
Sbjct: 60 NGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYAL 119
Query: 744 --QHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFNSC------------------ 783
+H L L SGGQKQR+++A A+ +
Sbjct: 120 KERHPLSL----------------SGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNME 163
Query: 784 -----IKEE-LRGKTRILVTNQLHFLPHV-DRIILVSEGMIK 818
I+E +GK I++T+ FL V DR++L++ G I
Sbjct: 164 RVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 2e-12
Identities = 67/292 (22%), Positives = 111/292 (38%), Gaps = 48/292 (16%)
Query: 566 VSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEE 625
+ F LG T A L L LR PL +L ++ A V+ ++ +L LA
Sbjct: 249 LVFWLALSLGWASTNVAATIVLVLL-FLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPY 307
Query: 626 RILMPNPPLEPELPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVS 685
+ P P P+ + ++N F++ + + INL I G LV ++GG G GK++L
Sbjct: 308 KADFPRPQAFPDWKTLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAM 367
Query: 686 AMLGELPP-----LKDASVV-------IRGTVAYVPQISWIFNATLRKNILFGSEFDPAK 733
+ G P L D V R + V +F+ L + P
Sbjct: 368 LLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPE----GKASPQL 423
Query: 734 YWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARA--------------- 778
K + L H L D + + +S GQK+R+++ A
Sbjct: 424 IEKWLQRLELAHKTSLN-DGRFSNL-----KLSTGQKKRLALLLALLEERDILVLDEWAA 477
Query: 779 ----VFNSCIKEEL------RGKTRILVTNQLHFLPHVDRIILVSEGMIKEE 820
F + L +GKT +++ H+ H DR++ + G + E
Sbjct: 478 DQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 529
|
Length = 546 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 4e-12
Identities = 70/314 (22%), Positives = 120/314 (38%), Gaps = 46/314 (14%)
Query: 1007 LFFH----TNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLW 1062
L FH T + R I R ++ + I R + L+ +L T V I +V+ I
Sbjct: 30 LRFHLERRTGGLSRAIERGTKGIETILRWI----------LFNILPTLVEISLVAVILWR 79
Query: 1063 A--IMPLLILF--YAAYLYYQSTA--------REVKRLDSITRSPVYAQFGEALNGLSTI 1110
L YL + R + DS A+ ++L T+
Sbjct: 80 VYGWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSD----ANAKAIDSLLNFETV 135
Query: 1111 RAFKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTI---RLETLGGIMIWLIATFAVMQN 1167
+ F + A +++ + + S L + + G ++ ++ V +
Sbjct: 136 KYFGNEEYEAVRYDHALETYEKAAIKVHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEG 195
Query: 1168 GRAENQVAFASTMGLLLSYTLNITNLLSGVLRQA-SRAENSLNAVERVGTYIDLPSEAPG 1226
+ + + LS LN +RQA + E DL
Sbjct: 196 QLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMF----------DLLDVEAE 245
Query: 1227 MVESNRPPPAWP-SSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSS 1285
+ ++ PP WP G++ F +V Y P P+L+G+SFT+ + V IVG +GAGKS+
Sbjct: 246 VSDAPDAPPLWPVRLGAVAFINVSFAYDPR-RPILNGISFTIPLGKTVAIVGESGAGKST 304
Query: 1286 MLNALFRIVELERG 1299
+L LFR ++ G
Sbjct: 305 ILRLLFRFYDVNSG 318
|
Length = 497 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 65.5 bits (161), Expect = 4e-12
Identities = 49/220 (22%), Positives = 84/220 (38%), Gaps = 80/220 (36%)
Query: 642 SIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI 701
++N + + + L +++L I G +V I+G G GK++L+ + G L P +++
Sbjct: 1 EVENLSVGYGGR-TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSS-GEILL 58
Query: 702 RGT-------------VAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLD 748
G +AYVPQ L+
Sbjct: 59 DGKDLASLSPKELARKIAYVPQA-----------------------------------LE 83
Query: 749 LLPDRDLTEIGERGVN-ISGGQKQRVSMARA------------------------VFNSC 783
LL L + +R N +SGG++QRV +ARA +
Sbjct: 84 LL---GLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELL 140
Query: 784 IKE-ELRGKTRILVTNQL-HFLPHVDRIILVSEGMIKEEG 821
+ RGKT ++V + L + DR+IL+ +G I +G
Sbjct: 141 RRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 5e-12
Identities = 114/427 (26%), Positives = 182/427 (42%), Gaps = 86/427 (20%)
Query: 915 ALGGPW-------VIMILFACYLSTEVLRISSSTWLSFWTDQSTSKNYNPGFYIAIYTIL 967
A G PW V+M+ A + EV S +S++ D +K P + + L
Sbjct: 16 AYGSPWRKPLGLAVLMLWVAA--AAEV---SGPLLISYFIDNMVAKGNLP---LGLVAGL 67
Query: 968 AFGQVTVTLLNS---YWLIISSLRAA----KRLHDSMLNSILRAPMLFFHTNPIGRVINR 1020
A V + LL + Y + RAA ++L ++++ LR P+ F T P+G++I+R
Sbjct: 68 AAAYVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISR 127
Query: 1021 FSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIG--IVSTISL-W-------AIMPLLIL 1070
+ D I ++++ + +L + LIG +V+ SL W I P +++
Sbjct: 128 VTNDTEVIR-------DLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMIFPAVLV 180
Query: 1071 FYAAYLYYQST--AREVKR-LDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSM 1127
Y Y ST R V+ L I F E +NG+S I+ F+ R +
Sbjct: 181 VMVIYQRY-STPIVRRVRAYLADINDG-----FNEVINGMSVIQQFRQQARFGE------ 228
Query: 1128 DNNIRFTLANTS--SNRWLTIRLETL----------GGIMIWLIATFAVMQNGRAENQV- 1174
R A+ S R T+RL+ I+ L+ F +G E V
Sbjct: 229 ----RMGEASRSHYMARMQTLRLDGFLLRPLLSLFSALILCGLLMLFGFSASGTIEVGVL 284
Query: 1175 -AFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAPGMVESNRP 1233
AF S +G L + +T S +L+QA + A ERV +D P + G +RP
Sbjct: 285 YAFISYLGRLNEPLIELTTQQS-MLQQA------VVAGERVFELMDGPRQQYG--NDDRP 335
Query: 1234 PPAWPSSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRI 1293
SG I ++V YR + VL ++ +V V +VG TG+GKS++ + L
Sbjct: 336 L----QSGRIDIDNVSFAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGY 390
Query: 1294 VELERGE 1300
L GE
Sbjct: 391 YPLTEGE 397
|
Length = 592 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 5e-12
Identities = 55/212 (25%), Positives = 92/212 (43%), Gaps = 53/212 (25%)
Query: 655 PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLG---------------ELPPLKDA-- 697
L ++NL+I G VAIVG +G GK++L++ +LG +L L +
Sbjct: 19 EALKDVNLEIEAGEFVAIVGPSGSGKSTLLN-LLGGLDKPTSGEVLINGKDLTKLSEKEL 77
Query: 698 SVVIRGTVAYVPQ-ISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQH---DLDLLPDR 753
+ + R + +V Q + + + T+ +N+ A A + L L
Sbjct: 78 AKLRRKKIGFVFQNFNLLPDLTVLENVELPLLI--AGKSAGRRKRAAEELLEVLGLEDRL 135
Query: 754 DLTEIGERGVNISGGQKQRVSMARAVFNSC-------------------IKEELR----- 789
+ E +SGGQ+QRV++ARA+ N+ + E LR
Sbjct: 136 LKKKPSE----LSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKE 191
Query: 790 -GKTRILVTNQLHFLPHVDRIILVSEGMIKEE 820
GKT I+VT+ + DR+I + +G I+EE
Sbjct: 192 RGKTIIMVTHDPELAKYADRVIELKDGKIEEE 223
|
Length = 226 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 6e-12
Identities = 49/199 (24%), Positives = 81/199 (40%), Gaps = 68/199 (34%)
Query: 642 SIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI 701
I+N +F + + L N++L + G +VA+VG G GK++L+ A+ G L P ++I
Sbjct: 1 EIENLSFRYGGR-TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSG-EILI 58
Query: 702 RGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGER 761
G I+ + LR+ I + V L
Sbjct: 59 DGK-----DIAKLPLEELRRRIGY--------------VPQL------------------ 81
Query: 762 GVNISGGQKQRVSMARAVFNSC-------------------IKEELR-----GKTRILVT 797
SGGQ+QRV++ARA+ + + E LR G+T I+VT
Sbjct: 82 ----SGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVT 137
Query: 798 NQLHFL-PHVDRIILVSEG 815
+ DR+I++ +G
Sbjct: 138 HDPELAELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.3 bits (163), Expect = 7e-12
Identities = 56/227 (24%), Positives = 98/227 (43%), Gaps = 48/227 (21%)
Query: 653 KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGT-------- 704
K L ++L++ G +VA++G G GKT+L+ ++G + P + ++ G
Sbjct: 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRP-RSGRIIFDGEDITGLPPH 73
Query: 705 ------VAYVPQISWIF-NATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTE 757
+AYVP+ IF T+ +N+L G+ K + D+ + +L P L E
Sbjct: 74 ERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEV---YELFP--RLKE 128
Query: 758 -IGERGVNISGGQKQRVSMARA----------------VFNSCIKE------ELR---GK 791
+R +SGG++Q +++ARA + ++E ELR G
Sbjct: 129 RRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGM 188
Query: 792 TRILVTNQLHF-LPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLM 837
T +LV F L DR ++ G I G+ EL + + +
Sbjct: 189 TILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPDVREAYL 235
|
Length = 237 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 70.0 bits (171), Expect = 8e-12
Identities = 77/330 (23%), Positives = 145/330 (43%), Gaps = 68/330 (20%)
Query: 570 TFTLLGGDLTPARAFTSLSLFAVLRFPLN---MLPNLLSQVVNANVSLQRLEELLLAEER 626
TF +L +A + ++ +L + LN +L +L Q A SL +E +
Sbjct: 1153 TFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERV---GNY 1209
Query: 627 ILMPNPPLEPELPAVSIKNGN--FSWDSKS----------------PTLSNINLDIPVGS 668
I +P+ E A+ I+N W S+ P L ++ +
Sbjct: 1210 IDLPS-----EATAI-IENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSE 1263
Query: 669 LVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI-------------RGTVAYVPQISWIF 715
V +VG TG GK+S+++A+ + L+ ++I R ++ +PQ +F
Sbjct: 1264 KVGVVGRTGAGKSSMLNALF-RIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLF 1322
Query: 716 NATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSM 775
+ T+R NI SE + A W+ ++ + ++ +D P E+ E G N S GQ+Q +S+
Sbjct: 1323 SGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSL 1382
Query: 776 ARAVF-----------------------NSCIKEELRGKTRILVTNQLHFLPHVDRIILV 812
ARA+ I+EE + T +++ ++L+ + D+I+++
Sbjct: 1383 ARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVL 1442
Query: 813 SEGMIKEEGSFEE-LSKHGRLFQKLMENAG 841
S G + E S +E LS+ F +++ + G
Sbjct: 1443 SSGQVLEYDSPQELLSRDTSAFFRMVHSTG 1472
|
Length = 1495 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 65.2 bits (160), Expect = 1e-11
Identities = 56/215 (26%), Positives = 86/215 (40%), Gaps = 54/215 (25%)
Query: 647 NFSWDSKS-PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP------LKDASV 699
S S L +++L + G +A++G +G GKT+L+ + G P + V
Sbjct: 5 GLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDV 64
Query: 700 ----VIRGTVAYVPQISWIF-NATLRKNILFG---SEFDPAKYWKTVDVSALQHDLDLLP 751
R + V Q +F + T+ +NI FG A+ V L+ L
Sbjct: 65 TGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLL 124
Query: 752 DRDLTEIGERGVNISGGQKQRVSMARAVFNSC---------------IKEELR------- 789
+R E +SGGQ+QRV++ARA+ ++EELR
Sbjct: 125 NRYPHE-------LSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQ 177
Query: 790 ---GKTRILVTNQLHFLPHV----DRIILVSEGMI 817
G T I VT H DRI +++EG I
Sbjct: 178 RELGITTIYVT---HDQEEALALADRIAVMNEGRI 209
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 1e-11
Identities = 57/230 (24%), Positives = 103/230 (44%), Gaps = 51/230 (22%)
Query: 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDA- 697
PA+ I+N + S+ + +I+LDI G V ++G +G GKT+L+ + G P +
Sbjct: 4 PALEIRNVSKSFGDF-TAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQP--SSG 60
Query: 698 SVVIRGT-----------VAYVPQISWIF-NATLRKNILFGSEFDPAKYWKTVDVSALQH 745
+++ G + V Q +F + T+ +N+ FG + A
Sbjct: 61 EILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFG------LKVRKKLKKAEIK 114
Query: 746 DL--DLLPDRDLTEIGERGVN-ISGGQKQRVSMARAVFNSC---------------IKEE 787
+ L L +R + +SGGQ+QRV++ARA+ ++E+
Sbjct: 115 ARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQ 174
Query: 788 LR----------GKTRILVT-NQLHFLPHVDRIILVSEGMIKEEGSFEEL 826
+R G T + VT +Q L DRI ++++G I++ G+ EE+
Sbjct: 175 MRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEI 224
|
Length = 352 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 68.8 bits (168), Expect = 2e-11
Identities = 100/473 (21%), Positives = 201/473 (42%), Gaps = 64/473 (13%)
Query: 422 PSGKVTNMITTDANALQQ-ISQQLHGLWSAPFRITLSMVLLYQQLGVASLLGSLMLVLMV 480
PSG + N + + + + I + + F + +++++ +A+++ + +L
Sbjct: 1060 PSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLGLLYF 1119
Query: 481 PLQTFIISKMRKLTKEGLQWTDRR--VSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDE 538
+Q F ++ R+L + L+ R S NE L + ++ + Q R D +
Sbjct: 1120 FVQRFYVASSRQLKR--LESVSRSPVYSHFNETLLGVSVIRAF----EEQERFIHQSDLK 1173
Query: 539 LSWFRKA--------QFLSAFNSFILNSIPVVVTVVSFGTFTLLG-GDLTPARAFTSLSL 589
+ +KA ++L+ + N I V+ F ++ L+ S+S
Sbjct: 1174 VDENQKAYYPSIVANRWLAVRLECVGNCI-----VLFAALFAVISRHSLSAGLVGLSVSY 1228
Query: 590 FAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEE----RILMPNPPLE-PELPAVSIK 644
+ F LN L + S++ V+++RL+E E+ +I PP P V +
Sbjct: 1229 SLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFR 1288
Query: 645 NGNFSW-DSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV--- 700
N + + L +IN+ I G V IVG TG GK+SL + + ++
Sbjct: 1289 NYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGL 1348
Query: 701 ---------IRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLP 751
+R + +PQ +F+ +LR N+ S++ + W ++++ L+ + LP
Sbjct: 1349 NIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALP 1408
Query: 752 DRDLTEIGERGVNISGGQKQRVSMARAVF-----------------------NSCIKEEL 788
D+ E E G N+S GQ+Q V +ARA+ S I+ +
Sbjct: 1409 DKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF 1468
Query: 789 RGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLMENAG 841
T + + ++L+ + R+I++ +G + E G+ L + +F + ++AG
Sbjct: 1469 EDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQRGIFYSMAKDAG 1521
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 2e-11
Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 1241 GSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
G I+FE+V Y + P VL ++F++ P E V IVG TGAGK++++N L R + ++G+
Sbjct: 1 GEIEFENVNFSYDEKKP-VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQ 59
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 2e-11
Identities = 58/304 (19%), Positives = 110/304 (36%), Gaps = 40/304 (13%)
Query: 1015 GRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLW---------AIM 1065
G ++ R D+ + ++++ + V+ A
Sbjct: 110 GDLLGRLGADVDALQ-------DLYVRVIVPAGVALVVGAAAVAAIAVLSVPAALILAAG 162
Query: 1066 PLLILFYAAYLYY---QSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKI 1122
LL F A + ++ + + RL R + AQ +AL+G + + A +
Sbjct: 163 LLLAGFVAPLVSLRAARAAEQALARL----RGELAAQLTDALDGAAELVA---SGALPAA 215
Query: 1123 NGKSMDNNIRFTLANTSSNRWLTIR--LETL-GGIMIW---LIATFAVMQNGRAENQVAF 1176
+ + + T A + + L L G+ + AV A V
Sbjct: 216 LAQVEEADRELTRAERRAAAATALGAALTLLAAGLAVLGALWAGGPAVADGRLAP--VTL 273
Query: 1177 ASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPA 1236
A + L L+ L +Q +R + ER+ +D +
Sbjct: 274 AVLVLLPLAAF-EAFAALPAAAQQLTRVRAAA---ERIVEVLDAAGPVA-EGSAPAAGAV 328
Query: 1237 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVEL 1296
+++ D+ Y P PPVL G+S + P E+V I+G +G+GKS++L L +++
Sbjct: 329 GLGKPTLELRDLSAGY-PGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDP 387
Query: 1297 ERGE 1300
+GE
Sbjct: 388 LQGE 391
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 2e-11
Identities = 43/156 (27%), Positives = 74/156 (47%), Gaps = 25/156 (16%)
Query: 639 PAVSIKNGNFSWD-SKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLK-- 695
+ ++N +FS+ S++ L N++ +I G VAI+G G GK+++ + G L P
Sbjct: 6 VMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGE 65
Query: 696 ---DASVVIRGTVAYV-PQISWIFN--------ATLRKNILFGSE---FDPAKYWKTVDV 740
D + + + + +I IF AT+ +I FG E P K +D
Sbjct: 66 IKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDD 125
Query: 741 SALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMA 776
A + ++ D++ N+SGGQKQRV++A
Sbjct: 126 LAKKVGMEDYLDKE-------PQNLSGGQKQRVAIA 154
|
Length = 271 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 4e-11
Identities = 49/223 (21%), Positives = 93/223 (41%), Gaps = 54/223 (24%)
Query: 636 PELPAVSIKNGNFSWDSKSP-TLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPL 694
PE + ++N + + P L N++ + G + IVG TG GK++L+ A+ L
Sbjct: 2 PEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAE 61
Query: 695 K--------DASVV----IRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSA 742
+ D S + +R ++ +PQ +F+ T+R N+ E+ + + + VS
Sbjct: 62 EGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALRVS- 120
Query: 743 LQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFNS-------------------- 782
E G+N+S GQ+Q + +ARA+
Sbjct: 121 -----------------EGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDAL 163
Query: 783 ---CIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGS 822
I+EE T + + ++L + D+I+++ G +KE
Sbjct: 164 IQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 6e-11
Identities = 46/164 (28%), Positives = 76/164 (46%), Gaps = 34/164 (20%)
Query: 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASV 699
+ +KN S+ S L ++NLDI G V ++G +G GK++L+ + G P +
Sbjct: 3 ELELKNVRKSFGSF-EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEP-TSGEI 60
Query: 700 VIRGT-----------VAYVPQISWIF--NATLRKNILFGSE---FDPAKYWKTVDVSA- 742
+I G +A V Q ++ + T+ +NI FG + A+ K V A
Sbjct: 61 LIDGRDVTDLPPEKRGIAMVFQ-NYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAK 119
Query: 743 ---LQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFNSC 783
L+H L+ P + +SGGQ+QRV++ARA+
Sbjct: 120 LLGLEHLLNRKP-----------LQLSGGQRQRVALARALVRKP 152
|
Length = 338 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 1e-10
Identities = 73/352 (20%), Positives = 129/352 (36%), Gaps = 53/352 (15%)
Query: 962 AIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILRAPMLFFHTNPIG----RV 1017
A G L S ++ R L ++ + +LR P+ FF G R
Sbjct: 180 LALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRA 239
Query: 1018 --INRFSRDLGD-IDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLILFYAA 1074
I++ R L + S + +N L + + +V+ + + L
Sbjct: 240 MGISQIRRILSGSTLTTLLSGIFALLN-LGLMFYYSWKLALVAVALALVAI-AVTLVLGL 297
Query: 1075 Y-LYYQSTAREVK-RLDSITRSPVYAQFGEALNGLSTIR-------AF----KAYDRMAK 1121
+ + E+ ++ +T + +NG+S +R AF K + R K
Sbjct: 298 LQVRKERRLLELSGKISGLT--------VQLINGISKLRVAGAENRAFARWAKLFSRQRK 349
Query: 1122 INGKSMDNNIRFTLANTSSNRWLTIRLETLGGIMIWLIATFAVMQNGRAENQVAFASTMG 1181
+ + T+ N + L I L+ A + G +AF + G
Sbjct: 350 LELSAQRIENLLTVFNAV---LPVLTSAALFAAAISLLGG-AGLSLGSF---LAFNTAFG 402
Query: 1182 LLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSG 1241
++N L +L + ER ++ E V+ + P SG
Sbjct: 403 SFSGAVTQLSNTLISIL-------AVIPLWERAKPILEALPE----VDEAKTDPG-KLSG 450
Query: 1242 SIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRI 1293
+I+ + V RYRP+ P +L +S + P E V IVG +G+GKS+ L R+
Sbjct: 451 AIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKST----LLRL 498
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 62.5 bits (153), Expect = 1e-10
Identities = 52/216 (24%), Positives = 85/216 (39%), Gaps = 72/216 (33%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGT--------VAYV 708
L +I+L + G VA+VG +G GK++L+ + G P V++ G YV
Sbjct: 20 LEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERP-TSGEVLVDGEPVTGPGPDRGYV 78
Query: 709 PQ----ISWIFNATLRKNILFGSEFDPAK----------YWKTVDVSALQHDLDLLPDRD 754
Q + W T+ N+ G E + V L + P +
Sbjct: 79 FQQDALLPW---LTVLDNVALGLELQGVPKAEARERAEELLELVG---LSGFENAYPHQ- 131
Query: 755 LTEIGERGVNISGGQKQRVSMARAVFN---------------SCIKEELR---------- 789
+SGG +QRV++ARA+ + +E+L+
Sbjct: 132 ----------LSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRET 181
Query: 790 GKTRILVTNQLH---FLPHVDRIILVSE--GMIKEE 820
GKT +LVT+ + FL DR++++S G I E
Sbjct: 182 GKTVLLVTHDIDEAVFLA--DRVVVLSARPGRIVAE 215
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 2e-10
Identities = 56/225 (24%), Positives = 98/225 (43%), Gaps = 54/225 (24%)
Query: 651 DSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLG-ELPPLKDASVVIRGT----- 704
K L +++L +P G + I+G +G GK++L+ + G E P SV++ GT
Sbjct: 15 GGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERP--TSGSVLVDGTDLTLL 72
Query: 705 -----VAYVPQISWIF-------NATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPD 752
+I IF + T+ +N+ P + + L+LL
Sbjct: 73 SGKELRKARRRIGMIFQHFNLLSSRTVFENVAL-----PLEIAGVPKAEIEERVLELLEL 127
Query: 753 RDLTEIGER-GVNISGGQKQRVSMARAVFNS-----C---------------------IK 785
L + + +SGGQKQRV +ARA+ N+ C I
Sbjct: 128 VGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDIN 187
Query: 786 EELRGKTRILVTNQLHFLPHV-DRIILVSEGMIKEEGSFEELSKH 829
EL G T +L+T+++ + + DR+ ++ +G + EEG+ EE+ +
Sbjct: 188 REL-GLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFAN 231
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 3e-10
Identities = 55/245 (22%), Positives = 94/245 (38%), Gaps = 42/245 (17%)
Query: 614 LQRLEELLLAEER--------ILMPNPPLEPELPAVSIKNGNFSWDSKSPTLSNINLDIP 665
L++LE L E P P + +N + +D L +++ I
Sbjct: 287 LEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGGRLLLKDLSFRID 346
Query: 666 VGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTV--AYVPQISWIFNATLRKNI 723
G +AIVG G GK++L+ + GEL PL +V + TV Y Q +
Sbjct: 347 RGDRIAIVGPNGAGKSTLLKLLAGELGPLS-GTVKVGETVKIGYFDQ---HRDELDPDKT 402
Query: 724 LFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN-- 781
+ + +V A + +G +SGG+K R+ +A+ +
Sbjct: 403 VLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGV----LSGGEKARLLLAKLLLQPP 458
Query: 782 -----------------SCIKEELR---GKTRILVTNQLHFLPHV-DRIILVSEGMIKEE 820
++E L G T +LV++ +FL V RI LV + + + E
Sbjct: 459 NLLLLDEPTNHLDIESLEALEEALLDFEG-TVLLVSHDRYFLDRVATRIWLVEDKVEEFE 517
Query: 821 GSFEE 825
G +E+
Sbjct: 518 GGYED 522
|
Length = 530 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 4e-10
Identities = 57/226 (25%), Positives = 100/226 (44%), Gaps = 58/226 (25%)
Query: 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV 700
V ++N + + L ++NLDI G V ++G +G GKT+ + M+ L +
Sbjct: 1 VELENVTKRFGNV-TALDDLNLDIADGEFVVLLGPSGCGKTTTLR-MIAGLEEPTSGRIY 58
Query: 701 IRGT-VAYVP----QISWIF-------NATLRKNILFGSE---FDPAKYWKTVDVSA--- 742
I G V +P I+ +F + T+ NI FG + + + V A
Sbjct: 59 IGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELL 118
Query: 743 -LQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARA------VF---------NSCIKE 786
++H LD P + +SGGQ+QRV++ RA VF ++ ++
Sbjct: 119 QIEHLLDRKPKQ-----------LSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRV 167
Query: 787 ELR----------GKTRILVT-NQLHFLPHVDRIILVSEGMIKEEG 821
++R G T I VT +Q+ + DRI ++++G I++ G
Sbjct: 168 QMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 61.5 bits (149), Expect = 5e-10
Identities = 28/60 (46%), Positives = 39/60 (65%)
Query: 1241 GSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
G IK D+ +RY L PVL + + P +KVGI GRTG+GKSS+ A FR+V++ G+
Sbjct: 18 GEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGK 77
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 6e-10
Identities = 61/223 (27%), Positives = 96/223 (43%), Gaps = 55/223 (24%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGT-VAYVPQISWI- 714
L I+L + G +V I+G +G GK++L+ + G L S+ + G V I +
Sbjct: 18 LKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNG-LEEPDSGSITVDGEDVGDKKDILKLR 76
Query: 715 ---------FNA----TLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGER 761
FN T+ +N+ P K K A + L+LL + + ++
Sbjct: 77 RKVGMVFQQFNLFPHLTVLENVTLA----PVKVKKLSKAEAREKALELL---EKVGLADK 129
Query: 762 G----VNISGGQKQRVSMARAV--------FN---SCIKEELR-------------GKTR 793
+SGGQ+QRV++ARA+ F+ S + EL G T
Sbjct: 130 ADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTM 189
Query: 794 ILVTNQLHFLPHV-DRIILVSEGMIKEEGSFEEL---SKHGRL 832
I+VT+++ F V DR+I + +G I EEG EE K R
Sbjct: 190 IIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPKSERT 232
|
Length = 240 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 6e-10
Identities = 36/138 (26%), Positives = 57/138 (41%), Gaps = 28/138 (20%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGT--VAYVPQISWI 714
L +INL + G VAI+G +G GK++L+ + G P V++ G P I ++
Sbjct: 19 LEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTS-GEVLLDGRPVTGPGPDIGYV 77
Query: 715 F-NATL------RKNILFGSEFDPAKYWKTVDVSA-------LQHDLDLLPDRDLTEIGE 760
F L N+ G E + + + L D P +
Sbjct: 78 FQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQ------- 130
Query: 761 RGVNISGGQKQRVSMARA 778
+SGG +QRV++ARA
Sbjct: 131 ----LSGGMRQRVAIARA 144
|
Length = 248 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 1e-09
Identities = 20/57 (35%), Positives = 37/57 (64%)
Query: 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERG 1299
++F++V RY + PPVL +S + E V +VG +G+GKS+++N + R +++ G
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSG 57
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 1e-09
Identities = 22/59 (37%), Positives = 33/59 (55%)
Query: 1241 GSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERG 1299
G I+F +V Y + P L +S T+ EKV I+GR G+GKS++L L + + G
Sbjct: 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSG 59
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 1e-09
Identities = 25/57 (43%), Positives = 35/57 (61%)
Query: 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERG 1299
I FE V RY+P+ P +L +S + P E VGIVGR+G+GKS++ + R E G
Sbjct: 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENG 57
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 59.8 bits (146), Expect = 1e-09
Identities = 51/224 (22%), Positives = 90/224 (40%), Gaps = 53/224 (23%)
Query: 641 VSIKNGNFSW---DSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDA 697
+ +KN + ++ K L ++L I G VAIVG +G GK++L++ +LG L
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLN-ILGGLDRPTSG 59
Query: 698 SVVIRGTVAYVP-----------QISWIF-------NATLRKNILFGSEFDPAKYWKTVD 739
V + GT I ++F + T +N+ + +
Sbjct: 60 EVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRE 119
Query: 740 VSALQHDLDLLPDRDLTEIGERGVN-ISGGQKQRVSMARAVFNS---------------- 782
+ +LL L + + +SGGQ+QRV++ARA+ N
Sbjct: 120 RA-----EELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSE 174
Query: 783 -------CIKE--ELRGKTRILVTNQLHFLPHVDRIILVSEGMI 817
++E + G T ++VT+ + DRII + +G I
Sbjct: 175 TGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 1e-09
Identities = 54/217 (24%), Positives = 103/217 (47%), Gaps = 46/217 (21%)
Query: 655 PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGT----VAYVPQ 710
L +I+LDI G LVA++G +G GK++L+ + G P + + G V+ +
Sbjct: 16 GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETP-DAGRIRLNGRVLFDVSNLAV 74
Query: 711 ----ISWIF-------NATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIG 759
+ ++F + T+ NI FG + + + + ++ L L+ L +
Sbjct: 75 RDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLV---QLEGLA 131
Query: 760 ER-GVNISGGQKQRVSMARAV---------------FNSCIKEELR----------GKTR 793
+R +SGGQ+QRV++ARA+ ++ +++ELR G T
Sbjct: 132 DRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTT 191
Query: 794 ILVT-NQLHFLPHVDRIILVSEGMIKEEGSFEELSKH 829
+ VT +Q L DR++++++G I++ G +E+ H
Sbjct: 192 VFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDH 228
|
Length = 345 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 2e-09
Identities = 61/258 (23%), Positives = 117/258 (45%), Gaps = 54/258 (20%)
Query: 655 PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI------------- 701
P L ++ +I V IVG TG GK+S+++A L + L+ ++I
Sbjct: 1253 PVLHGLSFEISPSEKVGIVGRTGAGKSSMLNA-LFRIVELERGRILIDGCDISKFGLMDL 1311
Query: 702 RGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDL---TEI 758
R + +PQ +F+ T+R N+ +E + A W++++ + L+ D++ L E+
Sbjct: 1312 RKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLK---DVIRRNSLGLDAEV 1368
Query: 759 GERGVNISGGQKQRVSMARAVFNSC-----------------------IKEELRGKTRIL 795
E G N S GQ+Q +S+ARA+ I+EE + T ++
Sbjct: 1369 SEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLI 1428
Query: 796 VTNQLHFLPHVDRIILVSEGMIKEEGSFEEL-SKHGRLFQKLMENAGK----------ME 844
+ ++L+ + DRI+++ G + E + E L S G F K++++ G
Sbjct: 1429 IAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQSTGAANAQYLRSLVFG 1488
Query: 845 EMEEREEKDDSINSNQEV 862
E+R +++S + +
Sbjct: 1489 GDEDRLAREESKALDGQR 1506
|
Length = 1622 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 2e-09
Identities = 25/50 (50%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Query: 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFR 1292
I+FE+V Y P P VL +SFT+ +KV IVG +G+GKS++L LFR
Sbjct: 1 IEFENVTFAYDPGRP-VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFR 49
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 2e-09
Identities = 41/185 (22%), Positives = 76/185 (41%), Gaps = 49/185 (26%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISWIFN 716
L++++L+I G +VA++G +G GK++L+ + G P G++ I
Sbjct: 16 LNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEP-------DSGSI-------LIDG 61
Query: 717 ATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMA 776
L + + D L P LT + + +SGGQ+QRV++A
Sbjct: 62 EDLTDLEDELPPLRR-------RIGMVFQDFALFPH--LTVLENIALGLSGGQQQRVALA 112
Query: 777 RAVFN-------------------SCIKEELR------GKTRILVTNQLHFLPHV-DRII 810
RA+ ++ L+ G T +LVT+ L + DR++
Sbjct: 113 RALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVV 172
Query: 811 LVSEG 815
++ +G
Sbjct: 173 VLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 57.8 bits (141), Expect = 2e-09
Identities = 43/213 (20%), Positives = 84/213 (39%), Gaps = 76/213 (35%)
Query: 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP------- 693
+ ++N + + K L +I+L + G + ++G G GKT+L+ +LG L P
Sbjct: 1 IEVRNLSKRYGKK-TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKV 59
Query: 694 ----LKDASVVIRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDL 749
+K ++ + Y+P+ +P+ Y +++ ++ L L
Sbjct: 60 LGKDIKKEPEEVKRRIGYLPE-------------------EPSLYE---NLTVREN-LKL 96
Query: 750 LPDRDLTEIGERGVNISGGQKQRVSMARAVFN-------------------SCIKEELR- 789
SGG KQR+++A+A+ + E LR
Sbjct: 97 ----------------SGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRE 140
Query: 790 ----GKTRILVTNQLHFLPHV-DRIILVSEGMI 817
GKT +L ++ L + DR+ +++ G I
Sbjct: 141 LKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 3e-09
Identities = 71/278 (25%), Positives = 113/278 (40%), Gaps = 61/278 (21%)
Query: 586 SLSLFAVLRFPL----NMLPNLLSQVVNANVSLQRLEELLLAEERILMPNPPLEPELPAV 641
SL+L LR PL LP LLS A V+ +L +L LA + P P P+ +
Sbjct: 269 SLTLL-FLRTPLLSAVGALPTLLS----AQVAFNKLNKLALAPYKAEFPRPQAFPDWQTL 323
Query: 642 SIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAML---------GELP 692
++N F++ ++ INL I G L+ ++GG G GK++L AML GE+
Sbjct: 324 ELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTL--AMLLTGLYQPQSGEIL 381
Query: 693 PLKDASVVIRGTVAYVPQIS------WIFNATLRKNILFGSEFDPAKYWKTVDVSALQHD 746
L V Y S +F+ L G +PA K ++ + H
Sbjct: 382 -LDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHK 437
Query: 747 LDLLPDRDLTEIGERGVNISGGQKQRVSMA-----------------------RAVFNSC 783
L+L R + +S GQK+R+++ R F
Sbjct: 438 LELEDGRISN------LKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQV 491
Query: 784 IKEELR--GKTRILVTNQLHFLPHVDRIILVSEGMIKE 819
+ L+ GKT +++ H+ H DR++ + G + E
Sbjct: 492 LLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSE 529
|
Length = 547 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 3e-09
Identities = 47/165 (28%), Positives = 76/165 (46%), Gaps = 36/165 (21%)
Query: 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDAS 698
P + + + + + + L ++L + GSLV +VG G GKT+L+ A+ G L P +
Sbjct: 2 PMIDVSDLSVEFGD-TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTP-TAGT 59
Query: 699 VVIRG-------------TVAYVPQ-ISWIFNATLRKNILFG-----SEFDPAKYWKTVD 739
V++ G VA VPQ S F +R+ + G S FD W D
Sbjct: 60 VLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDT---WTETD 116
Query: 740 VSAL-----QHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAV 779
+A+ + + DR +T +SGG++QRV +ARA+
Sbjct: 117 RAAVERAMERTGVAQFADRPVTS-------LSGGERQRVLLARAL 154
|
Length = 402 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 3e-09
Identities = 53/249 (21%), Positives = 105/249 (42%), Gaps = 41/249 (16%)
Query: 651 DSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASV----------- 699
+ + L NI+ I G V ++G TG GK++L+SA L L D +
Sbjct: 14 EGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQ 73
Query: 700 VIRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIG 759
R +PQ +IF+ T RKN+ ++ + WK + L+ ++ P + +
Sbjct: 74 KWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLV 133
Query: 760 ERGVNISGGQKQRVSMARAVFNSC-------------------IKEELR----GKTRILV 796
+ G +S G KQ + +AR+V + I++ L+ T IL
Sbjct: 134 DGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILS 193
Query: 797 TNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLMENAGKMEEMEEREEKDDSI 856
+++ + R +++ E +++ S ++L F++ + + +++ R
Sbjct: 194 EHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAISPSDRLKLFPRR------- 246
Query: 857 NSNQEVSKP 865
NS++ KP
Sbjct: 247 NSSKSKRKP 255
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 3e-09
Identities = 48/170 (28%), Positives = 76/170 (44%), Gaps = 40/170 (23%)
Query: 640 AVSIKNGNFSW---DSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKD 696
+SI+N N + + L +INL+I G +V + G +G GKT+L++ + G L +++
Sbjct: 1 VISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLI-GGLRSVQE 59
Query: 697 ASVVIRGT----------VAYVPQISWIFNA-------TLRKNILFGSEFDPAKYWKTVD 739
S+ + G V I +IF A T R+N+ E P ++
Sbjct: 60 GSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEAR 119
Query: 740 VSA--------LQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN 781
A L LD P N+SGGQKQRV++ARA+ +
Sbjct: 120 ERARAMLEAVGLGDHLDYYPH-----------NLSGGQKQRVAIARALVH 158
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 4e-09
Identities = 39/126 (30%), Positives = 64/126 (50%), Gaps = 16/126 (12%)
Query: 667 GSLVAIVGGTGEGKTSLVSAMLGELPPLK-------DASVVIRGTVAYVPQ---ISWIFN 716
G L+ ++G G GKT+L+ A+LG +PP K + + YVPQ +W F
Sbjct: 6 GELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFP 65
Query: 717 ATLRKNILFG--SEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGV-NISGGQKQRV 773
++ ++ G + D +A++ L + LTE+ +R V +SGGQ+QRV
Sbjct: 66 ISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRV---GLTELADRPVGELSGGQRQRV 122
Query: 774 SMARAV 779
+ARA+
Sbjct: 123 LVARAL 128
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 5e-09
Identities = 55/262 (20%), Positives = 99/262 (37%), Gaps = 72/262 (27%)
Query: 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDAS 698
+ +KN + ++ L ++NL+I G +VAI+G +G GK++L+ ++ G + P
Sbjct: 2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDP-TSGE 60
Query: 699 VVIRGTVA----------YVPQISWIF-------NATLRKNILFGSEFDPAKYWKTVDVS 741
++ G I IF ++ +N+L G W+++
Sbjct: 61 ILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGR-LGYTSTWRSL--- 116
Query: 742 ALQHDLDLLPDRD-------LTEIG------ERGVNISGGQKQRVSMARA---------- 778
L D L +G +R +SGGQ+QRV++ARA
Sbjct: 117 -----FGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILA 171
Query: 779 --------------VFNSCIKE-ELRGKTRILVTNQLHF-LPHVDRIILVSEGMIKEEGS 822
V + + G T I+ +Q+ + DRII + G I +G
Sbjct: 172 DEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGP 231
Query: 823 FEELSK------HGRLFQKLME 838
EL+ +G + +
Sbjct: 232 ASELTDEALDEIYGNEISEDIN 253
|
Length = 258 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.8 bits (142), Expect = 5e-09
Identities = 64/235 (27%), Positives = 95/235 (40%), Gaps = 63/235 (26%)
Query: 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV 700
+ ++N ++S+ +P L NINL I G + I+G G GK++L + G L P K +V
Sbjct: 2 IRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLV 61
Query: 701 -------------IRGTVAYV---PQISWIFNATLRKNILFGSE---FDPAKYWKTVDVS 741
IR V V P+ ++ T+ +++ FG E P + K V
Sbjct: 62 SGIDTGDFSKLQGIRKLVGIVFQNPETQFV-GRTVEEDLAFGPENLCLPPIEIRKRV--- 117
Query: 742 ALQHDLDLLPDRDLTEIG------ERGVNISGGQKQRVSMA------------------- 776
DR L EIG +SGGQ Q V++A
Sbjct: 118 ----------DRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSML 167
Query: 777 -----RAVFNSCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEEL 826
AV K +GKT + +T+ L L DRII++ G I EG E +
Sbjct: 168 DPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENV 222
|
Length = 274 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 59.8 bits (146), Expect = 6e-09
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 1208 LNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSGSIKFEDVVLRYRPELPPVLHGLSFTV 1267
+ + R+ + E V A S+ +V Y + PVL GLS +
Sbjct: 308 IASARRINEITEQKPE----VTFPTTSTAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQI 363
Query: 1268 SPSEKVGIVGRTGAGKSSMLNALFR 1292
EKV ++GRTG GKS++L L R
Sbjct: 364 KAGEKVALLGRTGCGKSTLLQLLTR 388
|
Length = 574 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 6e-09
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 1244 KFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
+ E++ RY L +S T+ E V +VG G+GKS++L A+ +++ GE
Sbjct: 1 EIENLSFRYGG--RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGE 55
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 7e-09
Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 28/140 (20%)
Query: 659 NINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAY--------VPQ 710
I+ D+ + I G +G GK++L+ + G P ++V+ GTV + PQ
Sbjct: 16 KIDFDLN-EEVTGIFGASGAGKSTLLRCIAGLEKPDG-GTIVLNGTVLFDSRKKINLPPQ 73
Query: 711 ---ISWIF-NATL------RKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGE 760
I +F L R+N+ FG + + + V L LDLL L +
Sbjct: 74 QRKIGLVFQQYALFPHLNVRENLAFGLKRKRNRE-DRISVDEL---LDLL---GLDHLLN 126
Query: 761 RGV-NISGGQKQRVSMARAV 779
R +SGG+KQRV++ARA+
Sbjct: 127 RYPAQLSGGEKQRVALARAL 146
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 8e-09
Identities = 55/269 (20%), Positives = 103/269 (38%), Gaps = 79/269 (29%)
Query: 623 AEERILMPNPPLEPELPAVSIKN---------GNFSWDSKSPT-LSNINLDIPVGSLVAI 672
E+ I +P P +S++N G F + + +++ D+ G + +
Sbjct: 263 DEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGL 322
Query: 673 VGGTGEGKTSLVSAMLGELPPLKDASVVIR----------GTVAYVPQISWIF------- 715
VG +G GK++L + G LPP + +I +I +F
Sbjct: 323 VGESGSGKSTLARILAGLLPP--SSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSL 380
Query: 716 --NATLRKNI----LFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVN----- 764
T+ + A+ V +LL +L + ++
Sbjct: 381 NPRMTVGDILAEPLRIHGGGSGAERRARVA--------ELL---ELVGLPPEFLDRYPHE 429
Query: 765 ISGGQKQRVSMARA------------------------VFNSC--IKEELRGKTRILVTN 798
+SGGQ+QRV++ARA V N ++EEL G T + +++
Sbjct: 430 LSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEEL-GLTYLFISH 488
Query: 799 QLHFLPHV-DRIILVSEGMIKEEGSFEEL 826
L + ++ DR+ ++ +G I EEG E++
Sbjct: 489 DLAVVRYIADRVAVMYDGRIVEEGPTEKV 517
|
Length = 539 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 57.1 bits (139), Expect = 8e-09
Identities = 49/223 (21%), Positives = 80/223 (35%), Gaps = 73/223 (32%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLG--------------ELPPLKDASVVIR 702
L +++ I G + +VG +G GK++L A+LG +L L IR
Sbjct: 21 LDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80
Query: 703 GT-VAYVPQ-----------ISWIFNATLRKNILFGSEFDPAKYWKT-----VDVSALQH 745
+ V Q I LR + G + V V +
Sbjct: 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIH---GKLSKKEARKEAVLLLLVGVGLPEE 137
Query: 746 DLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFNS----------------------- 782
L+ P +SGGQ+QRV++ARA+ +
Sbjct: 138 VLNRYPHE-----------LSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILD 186
Query: 783 ---CIKEELRGKTRILVTNQLHFLPHV-DRIILVSEGMIKEEG 821
++EE G T + +T+ L + + DR+ ++ G I EEG
Sbjct: 187 LLKKLQEE-LGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 54.8 bits (133), Expect = 1e-08
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV 700
+ ++N + ++ K L +I+L I G + +VG G GK++L+ + GEL P D +V
Sbjct: 1 IELENLSKTYGGK-LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEP--DEGIV 57
Query: 701 IRG---TVAYVPQIS 712
G + Y Q+S
Sbjct: 58 TWGSTVKIGYFEQLS 72
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 1e-08
Identities = 55/221 (24%), Positives = 98/221 (44%), Gaps = 58/221 (26%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLG--------------ELPPLKDASVV-I 701
L +++L+IP G + I+G +G GK++L+ + +L L +A + +
Sbjct: 22 LDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81
Query: 702 RGTVAYVPQISWIFN----ATLRKNILFGSEFDPAKYWKTVDVSALQHDLDL--LPDRDL 755
R + + Q FN T+ +N+ F E A K + L+L L D+
Sbjct: 82 RQKIGMIFQH---FNLLSSRTVFENVAFPLEL--AGVPKAEIKQRVAELLELVGLSDK-- 134
Query: 756 TEIGERGVNISGGQKQRVSMARAVFNS-----C---------------------IKEELR 789
+SGGQKQRV++ARA+ N+ C I EL
Sbjct: 135 --ADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINREL- 191
Query: 790 GKTRILVTNQLHFLPHV-DRIILVSEGMIKEEGSFEELSKH 829
G T +L+T+++ + + DR+ ++ +G + EEG+ E+ +
Sbjct: 192 GLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFAN 232
|
Length = 339 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 55.9 bits (136), Expect = 2e-08
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 1244 KFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNAL 1290
+ +++ Y P L +S T+ E V IVG G+GKS++L L
Sbjct: 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLL 47
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 3e-08
Identities = 22/57 (38%), Positives = 39/57 (68%)
Query: 1241 GSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELE 1297
G + +D+ +Y VL +SF++SP ++VG++GRTG+GKS++L+A R++ E
Sbjct: 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE 57
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 3e-08
Identities = 53/210 (25%), Positives = 87/210 (41%), Gaps = 55/210 (26%)
Query: 660 INLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP-----------LKDASVVI-----RG 703
N +P + A+ G +G GKTSL++ + G P L DA I +
Sbjct: 17 ANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKR 76
Query: 704 TVAYVPQISWIF-NATLRKNILFGSEF-DPAKYWKTVDVSALQHDLDLLPDRDLTEIGER 761
+ YV Q + +F + T+R N+ +G A++ + V + ++H LD P
Sbjct: 77 RIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGT-------- 128
Query: 762 GVNISGGQKQRVSMARAVFNS----------------------CIKEELRGKTRILVTNQ 799
+SGG+KQRV++ RA+ + E LR + I +
Sbjct: 129 ---LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYV 185
Query: 800 LHFLPHV----DRIILVSEGMIKEEGSFEE 825
H L V DR++++ G +K G EE
Sbjct: 186 SHSLDEVLRLADRVVVLENGKVKASGPLEE 215
|
Length = 352 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 3e-08
Identities = 56/246 (22%), Positives = 94/246 (38%), Gaps = 66/246 (26%)
Query: 639 PAVSIKNGNFSWDSK---SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP-- 693
+S++N + + L+N++L+I G + IVG +G GK++L + G P
Sbjct: 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSS 61
Query: 694 -----------LKDASVVIRGTVAYVPQ-----------ISWIFNATLRKNILFGSEFDP 731
K + V V Q + I + LR + L S+
Sbjct: 62 GSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRI 121
Query: 732 AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARA------------- 778
A+ V + LD P +SGGQ+QR+++ARA
Sbjct: 122 AELLDQVGLPP--SFLDRRPHE-----------LSGGQRQRIAIARALIPEPKLLILDEP 168
Query: 779 -----------VFNSCIKE-ELRGKTRILVTNQLHFLPHV-DRIILVSEGMIKEEGSFEE 825
+ N ++ + RG T + +++ L + H+ DRI ++ G I E G EE
Sbjct: 169 TSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEE 228
Query: 826 LSKHGR 831
L H
Sbjct: 229 LLSHPS 234
|
Length = 252 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 54.8 bits (133), Expect = 4e-08
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 1243 IKFEDVVLRYRP---ELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNAL 1290
I ED + E L ++ V E V IVG G+GKSS+L+AL
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSAL 51
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 4e-08
Identities = 55/231 (23%), Positives = 105/231 (45%), Gaps = 62/231 (26%)
Query: 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDAS 698
P V ++ + S+D K +SN++L I G + ++G +G GKT+++ ++
Sbjct: 13 PLVELRGISKSFDGK-EVISNLDLTINNGEFLTLLGPSGCGKTTVLR-LIAGFETPDSGR 70
Query: 699 VVIRG-TVAYVP----QISWIFNA-------TLRKNILFG--------SEFDPAKYWKTV 738
+++ G + +VP ++ +F + T+ +N+ FG +E P + +
Sbjct: 71 IMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITP----RVM 126
Query: 739 DVSALQHDLDLLPDRDLTEIGERGV-NISGGQKQRVSMARAVFN-----------SCIKE 786
+ + L E +R +SGGQ+QRV++ARAV N S +
Sbjct: 127 EALRMVQ---------LEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDY 177
Query: 787 ELR--------------GKTRILVT-NQLHFLPHVDRIILVSEGMIKEEGS 822
+LR G T + VT +Q L DRI+++ +G I+++G+
Sbjct: 178 KLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGT 228
|
Length = 375 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 4e-08
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
I+FE+V Y P L +SF + E V + G +GAGKS++L ++ RG+
Sbjct: 2 IRFENVSKAY-PGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGK 58
|
Length = 223 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 4e-08
Identities = 39/160 (24%), Positives = 67/160 (41%), Gaps = 27/160 (16%)
Query: 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSA---MLGELPPLKDA 697
+ +++ N + K L +I+LDIP G + A++G +G GK++L+ + +P D
Sbjct: 1 IELRDLNVYYGDKH-ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDE 59
Query: 698 SVVI----------------RGTVAYVPQISWIFNATLRKNILFG---SEFDPAKYWKTV 738
V+ R V V Q F ++ N+ +G +
Sbjct: 60 GEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDER 119
Query: 739 DVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARA 778
AL+ L D + G +SGGQ+QR+ +ARA
Sbjct: 120 VEEALR--KAALWDEVKDRLHALG--LSGGQQQRLCLARA 155
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 5e-08
Identities = 60/215 (27%), Positives = 98/215 (45%), Gaps = 45/215 (20%)
Query: 653 KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAM-------LGEL----PPLKDASVV- 700
+ L NI+L+I G +V I+G +G GK++L+ + G+L + D V
Sbjct: 13 PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDE 72
Query: 701 --IRGTVAYVPQISWIF-NATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTE 757
IR V Q ++F + T +N++FG P + A + +LL L E
Sbjct: 73 RLIRQEAGMVFQQFYLFPHLTALENVMFG----PLRVRGASKEEAEKQARELLAKVGLAE 128
Query: 758 -IGERGVNISGGQKQRVSMARA--------VFN---SCIKEELR-------------GKT 792
+SGGQ+QRV++ARA +F+ S + ELR G T
Sbjct: 129 RAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMT 188
Query: 793 RILVTNQLHFLPHV-DRIILVSEGMIKEEGSFEEL 826
++VT+++ F V R+I + +G I E+G + L
Sbjct: 189 MVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVL 223
|
Length = 240 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 8e-08
Identities = 23/52 (44%), Positives = 37/52 (71%), Gaps = 3/52 (5%)
Query: 1243 IKFEDVVLRY--RPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFR 1292
I+F++V RY RP++P +L GLS T+ P + V +VG +G GKS++++ L R
Sbjct: 1 IEFKNVSFRYPSRPDVP-ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLER 51
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 9e-08
Identities = 60/215 (27%), Positives = 103/215 (47%), Gaps = 53/215 (24%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGT-----------V 705
L++I+LDIP G +VA++G +G GKT+L+ + G L + GT V
Sbjct: 18 LNDISLDIPSGQMVALLGPSGSGKTTLLRIIAG-LEHQTSGHIRFHGTDVSRLHARDRKV 76
Query: 706 AYVPQISWIF-NATLRKNILFGSEFDPAKYWKTVDVSAL-QHDLDLLPDRDLTEIGER-G 762
+V Q +F + T+ NI FG P + + + +A+ LL L + +R
Sbjct: 77 GFVFQHYALFRHMTVFDNIAFGLTVLPRR--ERPNAAAIKAKVTQLLEMVQLAHLADRYP 134
Query: 763 VNISGGQKQRVSMARAV---------------FNSCIKEELRGKTRILVTNQLH------ 801
+SGGQKQRV++ARA+ ++ +++ELR R QLH
Sbjct: 135 AQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLR-----QLHEELKFT 189
Query: 802 --FLPH--------VDRIILVSEGMIKEEGSFEEL 826
F+ H DR++++S+G I++ G+ +++
Sbjct: 190 SVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQV 224
|
Length = 353 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 9e-08
Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 33/146 (22%)
Query: 652 SKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGT------- 704
+ L+NI+L + G +AI G +G GK++L+ ++ L +++ G
Sbjct: 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLK-IVASLISPTSGTLLFEGEDVSTLKP 72
Query: 705 ------VAYVPQISWIFNATLRKNILFGS-----EFDPAKYWKTVDVSALQHDLDLLPDR 753
V+Y Q +F T+ N++F D A LDLL
Sbjct: 73 EAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAA------------LDLLARF 120
Query: 754 DL--TEIGERGVNISGGQKQRVSMAR 777
L + + + +SGG+KQR+++ R
Sbjct: 121 ALPDSILTKNITELSGGEKQRIALIR 146
|
Length = 223 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 1e-07
Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 17/123 (13%)
Query: 1174 VAFASTMGLLLSYTLNITNLLSGVLRQASRAE---NSLNAVERVGTYIDLPSEAPGMVES 1230
VAF LL+ + ++ V A + E +AV V + PG ++
Sbjct: 276 VAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDV-------RDPPGAIDL 328
Query: 1231 NRPPPAWPSSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNAL 1290
R G+++F+DV Y + +SF P + V IVG TGAGKS+++N L
Sbjct: 329 GR------VKGAVEFDDVSFSY-DNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLL 381
Query: 1291 FRI 1293
R+
Sbjct: 382 QRV 384
|
Length = 588 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 1e-07
Identities = 83/344 (24%), Positives = 137/344 (39%), Gaps = 61/344 (17%)
Query: 971 QVTVTLLNSYWL----IISSLRAAKRLHDSMLNSILRAPMLFFHTNPIGRVINRFSRDLG 1026
Q +T L Y+L I ++ + R L ILR P+ FF G + +R
Sbjct: 207 QGVLTWLQLYYLRRLQIKLAVGMSAR----FLWHILRLPVRFFAQRHAGDIASRV----- 257
Query: 1027 DIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIM----PLL----ILFYAA---Y 1075
++ VA F++ QL +T + V + +M P+L I F A
Sbjct: 258 QLNDQVAEFLSG------QLATT--ALDAVMLVFYALLMLLYDPVLTLIGIAFAAINVLA 309
Query: 1076 LYYQSTARE--VKRLDSITRSPVYAQFGEALNGLSTIRAFKA-------YDRMAKINGKS 1126
L S R +RL + G A++GL +I KA + R A K
Sbjct: 310 LQLVSRRRVDANRRLQQ-DAGKLT---GVAISGLQSIETLKASGLESDFFSRWAGYQAKL 365
Query: 1127 MDNNIRFTLANTSSNRWLTI---RLETLGGIMIWLIATFAVMQNGR--AENQVAFASTMG 1181
++ + + L + L +L +I ++ VM G+ VAF S
Sbjct: 366 LNAQQELGV----LTQILGVLPTLLTSLNSALILVVGGLRVM-EGQLTIGMLVAFQS--- 417
Query: 1182 LLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTY-IDLPSEAPGMVESNRPPPAWPSS 1240
L+ S+ + NL+ G E LN ++ V +D E + P+ S
Sbjct: 418 LMSSFLEPVNNLV-GFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAG-SEPSPRLS 475
Query: 1241 GSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKS 1284
G ++ ++ Y P PP++ S T+ P ++V +VG +G+GKS
Sbjct: 476 GYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKS 519
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 1e-07
Identities = 18/58 (31%), Positives = 33/58 (56%)
Query: 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
+ +V Y + VL LS + EK+ ++GR+G+GKS++L L ++ ++GE
Sbjct: 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGE 58
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 1e-07
Identities = 37/147 (25%), Positives = 67/147 (45%), Gaps = 25/147 (17%)
Query: 650 WDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDAS--VVIRG---- 703
W+ + L++++L + G ++AI+G +G GKT+L+ A+ G + S ++ G
Sbjct: 16 WNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK 75
Query: 704 ------TVAYVPQIS-WIFNATLRKNILF------GSEFDPAKYWKTVDVSALQHDLDLL 750
VAYV Q + T+R+ + + + A K V+ L+ L
Sbjct: 76 PDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRD----L 131
Query: 751 PDRDLTEIGERGVNISGGQKQRVSMAR 777
+ G ISGG+++RVS+A
Sbjct: 132 ALTRIG--GNLVKGISGGERRRVSIAV 156
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 1e-07
Identities = 52/202 (25%), Positives = 85/202 (42%), Gaps = 45/202 (22%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLG--------------ELPPLKDASVVIR 702
L I+L + G +V I+G +G GK++L+ + +L K +R
Sbjct: 16 LKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELR 75
Query: 703 GTVAYVPQISWIF-NATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTE-IGE 760
V V Q +F + T+ +NI P K A + L+LL L +
Sbjct: 76 QKVGMVFQQFNLFPHLTVLENITLA----PIKVKGMSKAEAEERALELLEKVGLADKADA 131
Query: 761 RGVNISGGQKQRVSMARAV--------FNS--------CIKEEL--------RGKTRILV 796
+SGGQ+QRV++ARA+ F+ + E L G T ++V
Sbjct: 132 YPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVV 191
Query: 797 TNQLHFLPHV-DRIILVSEGMI 817
T+++ F V DR+I + +G I
Sbjct: 192 THEMGFAREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 2e-07
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 1241 GSIKFEDVVLRY--RPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELER 1298
G +KF++V Y RP+ VL +SFT+ P E +VG +G+GKS+++ L + +
Sbjct: 10 GIVKFQNVTFAYPTRPDTL-VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQG 68
Query: 1299 GE 1300
G+
Sbjct: 69 GQ 70
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 52.1 bits (126), Expect = 2e-07
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 1246 EDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
E++ + Y VL LS ++ E VGI+G GAGKS++L L +++ GE
Sbjct: 3 ENLSVGYGG--RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGE 55
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 2e-07
Identities = 55/228 (24%), Positives = 98/228 (42%), Gaps = 50/228 (21%)
Query: 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAM-LGELP------ 692
++ + N + + L +I LD P G + ++G +G GK+SL+ + L E+P
Sbjct: 2 SIQLNGINCFYGA-HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLN 60
Query: 693 -----------PLKDASVVIRGTVAYVPQISWIF-NATLRKNILFGSEFDPAKYWKTVDV 740
P A +R V V Q ++ + T+++N++ P +
Sbjct: 61 IAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEA----PCRVLGLSKD 116
Query: 741 SALQHDLDLLPDRDLTEIGER-GVNISGGQKQRVSMARA--------VFN---------- 781
AL LL L +R +++SGGQ+QRV++ARA +F+
Sbjct: 117 QALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEI 176
Query: 782 -----SCIKE-ELRGKTRILVTNQLHFLPHV-DRIILVSEGMIKEEGS 822
S IKE G T+++VT+++ R++ + G I E+G
Sbjct: 177 TAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGD 224
|
Length = 242 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 3e-07
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNAL 1290
++ E+V RY PPVL +SF++ P E + I+G +G+GKS++ +
Sbjct: 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLI 48
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 3e-07
Identities = 42/134 (31%), Positives = 68/134 (50%), Gaps = 19/134 (14%)
Query: 660 INLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI--RGTVAYVPQISWIFNA 717
++ ++P G+ + I G G GK+SL +LGEL P+ + +G + YVPQ ++
Sbjct: 471 LSFEVPSGNNLLICGPNGCGKSSLFR-ILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLG 529
Query: 718 TLRKNILF-GSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVN----------IS 766
TLR I++ S D + + + L+ LD + LT I ER +S
Sbjct: 530 TLRDQIIYPDSSEDMKR--RGLSDKDLEQILDNV---QLTHILEREGGWSAVQDWMDVLS 584
Query: 767 GGQKQRVSMARAVF 780
GG+KQR++MAR +
Sbjct: 585 GGEKQRIAMARLFY 598
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 3e-07
Identities = 51/229 (22%), Positives = 90/229 (39%), Gaps = 67/229 (29%)
Query: 646 GNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP-----------L 694
G+FS D + +P + AI G +G GKT+L+ + G P L
Sbjct: 10 GDFSLD--------ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTL 61
Query: 695 KDASVVI-----RGTVAYVPQISWIF-NATLRKNILFGSEFDPAKYW-----KTVDVSAL 743
D+ I + + YV Q + +F + ++R N+ +G + + +++ +
Sbjct: 62 FDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGI 121
Query: 744 QHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFNS--------------------- 782
H L LP R +SGG+KQRV++ RA+ +S
Sbjct: 122 GHLLGRLPGR-----------LSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEI 170
Query: 783 -CIKEELRGKTRILVTNQLHFLPHV----DRIILVSEGMIKEEGSFEEL 826
E L + I + H L V DR++++ +G + G E+
Sbjct: 171 LPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEV 219
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.0 bits (127), Expect = 3e-07
Identities = 45/159 (28%), Positives = 73/159 (45%), Gaps = 24/159 (15%)
Query: 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDAS 698
+ + + +W + L + + +P GS+ A+VG G GK++L A++G L
Sbjct: 5 AGIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMG-FVRLASGK 63
Query: 699 VVIRGT----------VAYVPQ---ISWIFNATLRKNILFGSE-----FDPAKYWKTVDV 740
+ I G VAYVPQ + W F + ++ G AK V
Sbjct: 64 ISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIV 123
Query: 741 SALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAV 779
+A +D++ R +IGE +SGGQK+RV +ARA+
Sbjct: 124 TAALARVDMVEFRH-RQIGE----LSGGQKKRVFLARAI 157
|
Length = 272 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 52.1 bits (126), Expect = 4e-07
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 1258 PVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
+L G+S TV E V ++GR GAGK+++L + ++ G
Sbjct: 14 QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGS 56
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 4e-07
Identities = 68/265 (25%), Positives = 106/265 (40%), Gaps = 91/265 (34%)
Query: 641 VSIKNGNFSWDSKSPT----LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP--- 693
+ +KN ++ K PT L N++++I G +AI+G TG GKT+ + + L P
Sbjct: 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTG 62
Query: 694 -----LKD--------------ASVV--------------IRGTVAYVPQIS--WIFNAT 718
KD +V IR V V Q + +F T
Sbjct: 63 TIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQT 122
Query: 719 LRKNILFG----------SEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGG 768
+ K+I+FG ++ AKY + V + D L +SGG
Sbjct: 123 IEKDIIFGPVSMGVSKEEAKKRAAKYIELVGL-----DESYLQRSPF--------ELSGG 169
Query: 769 QKQRVSMARA--------VFNS--------CIKEEL--------RGKTRILVTNQL-HFL 803
QK+RV++A VF+ +KE L +GKT ILVT+ L + L
Sbjct: 170 QKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVL 229
Query: 804 PHVDRIILVSEG-MIKEEGSFEELS 827
R I +G +IK+ +++ LS
Sbjct: 230 EWTKRTIFFKDGKIIKDGDTYDILS 254
|
Length = 305 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 4e-07
Identities = 64/232 (27%), Positives = 100/232 (43%), Gaps = 58/232 (25%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAM-LGELP----------------PLKDASV 699
L I+L++ G +VAI+G +G GKT+L+ + L E P L
Sbjct: 19 LHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKG 78
Query: 700 VIRG---TVAYVPQISWIF-NATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDL 755
+IR V +V Q +F + T+ +NI+ G P A +LL L
Sbjct: 79 LIRQLRQHVGFVFQNFNLFPHRTVLENIIEG----PVIVKGEPKEEATARARELLAKVGL 134
Query: 756 TEIGERGV---NISGGQKQRVSMARA--------VFN---SCIKEELRG----------- 790
G+ +SGGQ+QRV++ARA +F+ S + EL G
Sbjct: 135 A--GKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQ 192
Query: 791 --KTRILVTNQLHFLPHV-DRIILVSEGMIKEEGSFEEL---SKHGRLFQKL 836
+T ++VT+++ F V DR I + +G I E+G + L + R Q L
Sbjct: 193 EKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFADPQQPRTRQFL 244
|
Length = 250 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 4e-07
Identities = 50/204 (24%), Positives = 82/204 (40%), Gaps = 48/204 (23%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISWIFN 716
L +I+ +I G V I+G G GK++L+ + G P V + G VA + ++ F+
Sbjct: 43 LKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTS-GKVKVTGKVAPLIELGAGFD 101
Query: 717 --ATLRKNILF--------GSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNIS 766
T R+NI E D K + ++ + L +D P + S
Sbjct: 102 PELTGRENIYLRGLILGLTRKEID-EKVDEIIEFAELGDFID-QPVK----------TYS 149
Query: 767 GGQKQRVSMARAVF--------------------NSCIK--EEL--RGKTRILVTNQLHF 802
G R++ + A C++ EL + KT +LV++ L
Sbjct: 150 SGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGA 209
Query: 803 LPHV-DRIILVSEGMIKEEGSFEE 825
+ DR I + G I+ EGS EE
Sbjct: 210 IKQYCDRAIWLEHGQIRMEGSPEE 233
|
Length = 249 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 5e-07
Identities = 39/161 (24%), Positives = 72/161 (44%), Gaps = 38/161 (23%)
Query: 637 ELPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKD 696
++ +S F L N++L++ G I+G TG GK+ L+ + G + P
Sbjct: 2 KVENLSKDWKEFK-------LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDS- 53
Query: 697 ASVVIRGT-----------VAYVPQISWIF-NATLRKNILFG-------SEFDPAKYWKT 737
+++ G ++YVPQ +F + T+ KNI +G + K +
Sbjct: 54 GKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEI 113
Query: 738 VDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARA 778
++ + H L+ P+ +SGG++QRV++ARA
Sbjct: 114 AEMLGIDHLLNRKPET-----------LSGGEQQRVAIARA 143
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 5e-07
Identities = 48/172 (27%), Positives = 69/172 (40%), Gaps = 34/172 (19%)
Query: 632 PPLEPELPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGEL 691
P+E P + +KN + + K L +++ + G AIVG G GKT+L+S + GE
Sbjct: 23 HPIEINEPLIELKNVSVRRNGK-KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEH 81
Query: 692 PPLKDASVV---IRGTVAYVPQISWIFNATLRKNI-LFGSE--FDPAKYWKTVDV--SAL 743
PP + G IF LRK I L SE DV S
Sbjct: 82 PPSSGDVTLLGRRFGKG------ETIF--ELRKRIGLVSSELHERFRVRETVRDVVLSGF 133
Query: 744 -------QHDLD---------LLPDRDLTEIGERGV-NISGGQKQRVSMARA 778
Q DL LL + +R ++S G+++RV +ARA
Sbjct: 134 FASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARA 185
|
Length = 257 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 53.8 bits (129), Expect = 5e-07
Identities = 73/315 (23%), Positives = 116/315 (36%), Gaps = 63/315 (20%)
Query: 564 TVVSFGTFTLLGGDLTPARAFTSL-------SLFAVLRF--PLNMLPNLLSQVVNANVSL 614
F L+G L A F S+ + A+L PL ML + L + A ++
Sbjct: 242 NFGQLLFFLLIGCALFAAAMFASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIAC 301
Query: 615 QRLEELLLAEERILMPNP-PLEPELPAVSIKNGNFSWDS----------KSP------TL 657
QRL + ER P P + V + + S DS K+P L
Sbjct: 302 QRLADF---GERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFAL 358
Query: 658 SNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP------LKDASVVIRGTVAYVPQI 711
I+L I G +V IVG G GK++L G P L A+V Y
Sbjct: 359 GPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLF 418
Query: 712 SWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIG-ERGVNISGGQK 770
S IF + L G D ++ + L++ + + G +S GQ+
Sbjct: 419 SAIFADFHLFDDLIGP--DEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQ 476
Query: 771 QRVSMARA-------------------VFNSCIKEEL------RGKTRILVTNQLHFLPH 805
+R+++ A F EEL +GKT I++++ +
Sbjct: 477 KRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFEL 536
Query: 806 VDRIILVSEGMIKEE 820
D+II ++ G I ++
Sbjct: 537 ADQIIKLAAGCIVKD 551
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 6e-07
Identities = 43/170 (25%), Positives = 75/170 (44%), Gaps = 40/170 (23%)
Query: 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAM--LGELPPL-- 694
PA+ +++ N + K L +INLDIP + A++G +G GK++L+ + + +L P
Sbjct: 6 PAIEVRDLNLYYGDKH-ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGAR 64
Query: 695 --------------KDASVV-IRGTVAYVPQISWIFNATLRKNILFG--------SEFDP 731
VV +R V V Q F ++ N+ +G E D
Sbjct: 65 VEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDE 124
Query: 732 AKYWKTVDVSALQ--HDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAV 779
+L+ D + DR + + + +SGGQ+QR+ +ARA+
Sbjct: 125 IVES------SLKKAALWDEVKDR----LHKSALGLSGGQQQRLCIARAL 164
|
Length = 253 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 6e-07
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
I+F +V Y P L G++ ++S E V +VG +GAGKS++L +++ G
Sbjct: 1 IEFINVTKTY-PNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGT 57
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 7e-07
Identities = 46/199 (23%), Positives = 84/199 (42%), Gaps = 53/199 (26%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVP------- 709
L ++NL I G + AI+G +G GK++L++ ++G L V + G
Sbjct: 14 LDDLNLTIEKGKMYAIIGESGSGKSTLLN-IIGLLEKFDSGQVYLNGQETPPLNSKKASK 72
Query: 710 ----QISWIF-------NATLRKNILFGSEFD--PAKYWKTVDVSAL-QHDLDLLPDRDL 755
++ ++F N T+ +N+ G ++ K + AL + L+L + +
Sbjct: 73 FRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKI 132
Query: 756 TEIGERGVNISGGQKQRVSMARAVFNSCI---------------KEEL---------RGK 791
E +SGG++QRV++ARA+ ++E+ GK
Sbjct: 133 YE-------LSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELNDEGK 185
Query: 792 TRILVTNQLHFLPHVDRII 810
T I+VT+ DR+I
Sbjct: 186 TIIIVTHDPEVAKQADRVI 204
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 8e-07
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
I+ E++ + Y PVL +S +V E ++G GAGKS++L A+ +++ GE
Sbjct: 5 IEVENLTVSYGNR--PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGE 60
|
Length = 254 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 9e-07
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
I+ E++ Y P L +S +++P E V ++G +GAGKS++L L +VE G
Sbjct: 1 IEVENLSKTY-PNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGS 57
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 1e-06
Identities = 40/154 (25%), Positives = 77/154 (50%), Gaps = 20/154 (12%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAML------GELP--PLKDASVVI---RGTV 705
L +++ + G V ++G TG GK++L+SA+L GE+ + SV + R
Sbjct: 1235 LQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWRKAF 1294
Query: 706 AYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNI 765
+PQ +IF+ T RKN+ ++ + WK + L+ ++ PD+ + + G +
Sbjct: 1295 GVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVL 1354
Query: 766 SGGQKQRVSMARAVFNSCIKEELRGKTRILVTNQ 799
S G KQ + +AR++ + K +IL+ ++
Sbjct: 1355 SNGHKQLMCLARSILS---------KAKILLLDE 1379
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 1e-06
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 1242 SIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
++ E++ Y P+L LSF++ E GI+G G+GKS++L L +++ + GE
Sbjct: 2 MLEVENLSFGYGG--KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGE 58
|
Length = 258 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 1e-06
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 1258 PVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
L G+S V E V ++GR GAGK+++L + +V G
Sbjct: 17 QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGR 59
|
Length = 237 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 1e-06
Identities = 61/256 (23%), Positives = 106/256 (41%), Gaps = 80/256 (31%)
Query: 639 PAVSIKNGNFSW-DSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP---- 693
+ +++ +F + D+ + L +++ + G VAIVG G GK++L + G L P
Sbjct: 4 EIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGT 63
Query: 694 -------LKDASVV-IRGTVAYVPQISWIFN-------ATLRKNILFGSE---------- 728
L + +V +R V V Q N AT++ ++ FG E
Sbjct: 64 ITVGGMVLSEETVWDVRRQVGMVFQ-----NPDNQFVGATVQDDVAFGLENIGVPREEMV 118
Query: 729 --FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMA---------- 776
D A + ++ L+ P R +SGGQKQRV++A
Sbjct: 119 ERVDQA-----LRQVGMEDFLNREPHR-----------LSGGQKQRVAIAGVLALQPDII 162
Query: 777 -------------RAVFNSCIKEELRGKTRILVTNQLHFLPHV---DRIILVSEGMIKEE 820
R ++ +L+ + I V + H L DR+I++++G I EE
Sbjct: 163 ILDEATSMLDPRGRREVLETVR-QLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEE 221
Query: 821 GSFEELSKHGRLFQKL 836
G+ EE+ K G + Q++
Sbjct: 222 GTPEEIFKSGHMLQEI 237
|
Length = 279 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 1e-06
Identities = 52/242 (21%), Positives = 87/242 (35%), Gaps = 87/242 (35%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV---------------- 700
+ ++ ++ G ++ IVG +G GK+ L A++G LP +A +V
Sbjct: 21 VDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPK-PNARIVGGEILFDGKDLLSLSE 79
Query: 701 -----IRGT-VAYVPQ-----------ISWIFNATLRKNILFGSEFDPAKYWKTVDVSAL 743
IRG +A + Q I LR + A
Sbjct: 80 KELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLH-----------GKGLSKKEAK 128
Query: 744 QHDLDLLPDRDLTEIGERG----VNISGGQKQRVSMARAVFNSC---------------- 783
+ ++LL + + R +SGG +QRV +A A+ +
Sbjct: 129 ERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMAL--ALNPKLLIADEPTTALDV 186
Query: 784 ------------IKEELRGKTRILVTNQLHFLPHV----DRIILVSEGMIKEEGSFEELS 827
++ E +G IL+T H L V DR+ ++ G I EEG EE+
Sbjct: 187 TVQAQILDLLKELQRE-KGTALILIT---HDLGVVAEIADRVAVMYAGRIVEEGPVEEIF 242
Query: 828 KH 829
K+
Sbjct: 243 KN 244
|
Length = 316 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 1e-06
Identities = 45/156 (28%), Positives = 73/156 (46%), Gaps = 24/156 (15%)
Query: 640 AVSIKNGNFSW-DSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDAS 698
V K+ +F++ DSK P L++I+ IP GS A++G G GK+++ + G L P + +
Sbjct: 5 IVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPN 64
Query: 699 VVI---------------RGTVAYVPQ--ISWIFNATLRKNILFGSEFDPAKYWKTVDVS 741
I R V V Q + AT+ ++ FG E + + +
Sbjct: 65 SKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIV 124
Query: 742 ALQHDLDLLPDRDLTE-IGERGVNISGGQKQRVSMA 776
D+L D + + I N+SGGQKQRV++A
Sbjct: 125 R-----DVLADVGMLDYIDSEPANLSGGQKQRVAIA 155
|
Length = 282 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 2e-06
Identities = 17/48 (35%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNAL 1290
I+ E++ Y +L +S T++P +++G+VGR GAGKS++L +
Sbjct: 1 IELENLSKTY--GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLI 46
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 2e-06
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 1251 RYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
+ L +SF + E+VGI+G GAGKS++L + I + G+
Sbjct: 34 GRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGK 83
|
Length = 249 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 2e-06
Identities = 41/180 (22%), Positives = 80/180 (44%), Gaps = 43/180 (23%)
Query: 630 PNPPLEPELPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAM-- 687
+ +S++N S+ + N+ DIP G + A++G +G GK++++ ++
Sbjct: 3 KTNKKISKNIIISLQNVTISY-GTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNR 61
Query: 688 LGELPP---LKDASVVIRGTVAYVPQISWI---------------FNATLRKNILFGSEF 729
+ +L LK V+ GT Y P++ + F ++ +NI FG+
Sbjct: 62 MNDLIEGCSLK-GRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGAR- 119
Query: 730 DPAKYWKTVDVSALQHDLDLLPDRDLTE----------IGERGVNISGGQKQRVSMARAV 779
++ D+D L +R L + + E G ++SGGQ+QR+ +AR +
Sbjct: 120 ----------INGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTI 169
|
Length = 269 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 2e-06
Identities = 54/235 (22%), Positives = 95/235 (40%), Gaps = 55/235 (23%)
Query: 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV 700
+ +N + ++N+NL+I G + ++G +G GKT+ + M+ L +
Sbjct: 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMK-MINRLIEPTSGEIF 59
Query: 701 IRG-------------TVAYVPQISWIF-NATLRKNI-----LFGSEFDPAKYWKTVDVS 741
I G + YV Q +F + T+ +NI L + K + D
Sbjct: 60 IDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLK--WPKEKIRERAD-- 115
Query: 742 ALQHDLDLLPDRDLTEIGER-GVNISGGQKQRVSMARA-------------------VFN 781
L + L P E +R +SGGQ+QRV +ARA +
Sbjct: 116 ELLALVGLDP----AEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITR 171
Query: 782 SCIKEELR------GKTRILVTNQL-HFLPHVDRIILVSEGMIKEEGSFEELSKH 829
++EE + GKT + VT+ + DRI ++ G I + G+ +E+ +
Sbjct: 172 DQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 2e-06
Identities = 60/202 (29%), Positives = 85/202 (42%), Gaps = 45/202 (22%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISWIFN 716
L I+LDI G +VAIVG +G GK++L++ +LG L K S R V +
Sbjct: 24 LKGISLDIYAGEMVAIVGASGSGKSTLMN-ILGCLD--KPTSGTYRVAGQDVATLDADAL 80
Query: 717 ATLRKNILFGSEFD----------------PAKYWKTVDVSALQHDLDLLPDRDLTE-IG 759
A LR+ FG F PA Y L +LL L + +
Sbjct: 81 AQLRRE-HFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVE 139
Query: 760 ERGVNISGGQKQRVSMARAVFN---------------SCIKEEL---------RGKTRIL 795
+ +SGGQ+QRVS+ARA+ N S EE+ RG T I+
Sbjct: 140 YQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVII 199
Query: 796 VTNQLHFLPHVDRIILVSEGMI 817
VT+ +R+I + +G I
Sbjct: 200 VTHDPQVAAQAERVIEIRDGEI 221
|
Length = 648 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 2e-06
Identities = 53/226 (23%), Positives = 94/226 (41%), Gaps = 33/226 (14%)
Query: 574 LGGDLTPARAF----TSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILM 629
GG + AF +SLS F + + + +L RL E A E M
Sbjct: 322 FGGLMQAVGAFGQVHSSLSWFI----------DNYDAIADWRATLLRLAEFRQALEAAQM 371
Query: 630 P-NPPLEPEL---------PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEG 679
P ++++N + LS +N ++ G + I G +G G
Sbjct: 372 DTEKPARTGRRIDFDDNADHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAG 431
Query: 680 KTSLVSAMLGELPPLKDASVVIRG--TVAYVPQISWIFNATLRKNILFGSEFDPAKYWKT 737
KTSL+ A L L P + + + ++PQ ++ TLR+ + + + A +
Sbjct: 432 KTSLLRA-LAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYP---NAAPDFSD 487
Query: 738 VDVSALQHDLDL--LPDRDLTEIGERGVNISGGQKQRVSMARAVFN 781
++ A+ H + L L +R L E +SGG++QR++ AR + +
Sbjct: 488 AELVAVLHKVGLGDLAER-LDEEDRWDRVLSGGEQQRLAFARLLLH 532
|
Length = 604 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 3e-06
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 4/105 (3%)
Query: 1199 RQASRAENSLNAVERVGTYIDLP-SEAPGMVESNRPPPAWPSSGS--IKFEDVVLRYRPE 1255
+A +A++ + +E++ + G + R PP G ++FE+V Y
Sbjct: 275 SKAKKAKSRIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGY-DG 333
Query: 1256 LPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
+L LSF + +++ IVG GAGKS++L L + G
Sbjct: 334 GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGT 378
|
Length = 530 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 3e-06
Identities = 47/170 (27%), Positives = 74/170 (43%), Gaps = 27/170 (15%)
Query: 622 LAEERILMPNPPLEPELPAVSIKNGN---FSWDSKSPTLSNINLD-----IPVGSLVAIV 673
L EE + +E E + T + L+ I G ++ I+
Sbjct: 314 LPEENVRFRPEEIEFEEKPPRDDKARDTLVEYPDLKKTYGDFKLEVEEGEIYDGEVIGIL 373
Query: 674 GGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQ-ISWIFNAT----LRKNILFGSE 728
G G GKT+ V + G + P + + ++ V+Y PQ IS ++ T LR I S
Sbjct: 374 GPNGIGKTTFVKLLAGVIKPDEGSEEDLK--VSYKPQYISPDYDGTVEDLLRSAI--RSA 429
Query: 729 FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARA 778
F + Y+KT V L L+ L +R + E +SGG+ QRV++A A
Sbjct: 430 FG-SSYFKTEIVKPLN--LEDLLERPVDE-------LSGGELQRVAIAAA 469
|
Length = 591 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 3e-06
Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 18/133 (13%)
Query: 652 SKSPTLSNINLDIPVGSL-----VAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVA 706
+ TL L++ GS+ + I+G G GKT+ + + G L P + + TV+
Sbjct: 5 TMKKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVS 64
Query: 707 YVPQ-ISWIFNATLRKNILFG--SEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGV 763
Y PQ I + T+R ++L +F Y+KT LQ ++ + DR++ E
Sbjct: 65 YKPQYIKADYEGTVR-DLLSSITKDFYTHPYFKTEIAKPLQ--IEQILDREVPE------ 115
Query: 764 NISGGQKQRVSMA 776
+SGG+ QRV++A
Sbjct: 116 -LSGGELQRVAIA 127
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 3e-06
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 20/154 (12%)
Query: 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP------- 693
+ K ++S L +I++ G++ IVG +G GK++L+ + + P
Sbjct: 4 IEFKEVSYS-SFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILI 62
Query: 694 ----LKDASVV-IRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLD 748
+K V+ +R + V Q +F T++ NI +G K K VDV +
Sbjct: 63 DGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPML---KGEKNVDVEYYLSIVG 119
Query: 749 LLPDRDLTEIGERGVNISGGQKQRVSMARAVFNS 782
L + ++ N+SGG+ QRVS+AR + N+
Sbjct: 120 LNKEYATRDVK----NLSGGEAQRVSIARTLANN 149
|
Length = 241 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 4e-06
Identities = 38/151 (25%), Positives = 66/151 (43%), Gaps = 34/151 (22%)
Query: 655 PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPL--------KDASVVIRGTVA 706
L IN+ I G V +VG +G GK++L+ + E P +D S + +
Sbjct: 15 AALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIP 74
Query: 707 YVPQ-ISWIF-------NATLRKNILFGSE--FDPAKYWK-----TVDVSALQHDLDLLP 751
Y+ + I +F + + +N+ F E P + + +++ L H LP
Sbjct: 75 YLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALP 134
Query: 752 DRDLTEIGERGVNISGGQKQRVSMARAVFNS 782
+SGG++QRV++ARA+ NS
Sbjct: 135 AE-----------LSGGEQQRVAIARAIVNS 154
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 4e-06
Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 31/139 (22%)
Query: 659 NINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTV------------- 705
+NL +P + AI G +G GKTSL++A+ G P + +V+ G V
Sbjct: 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRP-QKGRIVLNGRVLFDAEKGICLPPE 74
Query: 706 ----AYVPQISWIF-NATLRKNILFG-SEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIG 759
YV Q + +F + +R N+ +G ++ A++ K V + ++ LD P
Sbjct: 75 KRRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYP-------- 126
Query: 760 ERGVNISGGQKQRVSMARA 778
++SGG+KQRV++ RA
Sbjct: 127 ---GSLSGGEKQRVAIGRA 142
|
Length = 352 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 4e-06
Identities = 59/232 (25%), Positives = 99/232 (42%), Gaps = 47/232 (20%)
Query: 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAM--LGELPPLKDA 697
A+ I+N N + K L NINLDIP + A++G +G GK++L+ ++ + +L P
Sbjct: 1 AIEIENLNLFYGEKE-ALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRI 59
Query: 698 S-----------------VVIRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDV 740
V +R V V Q F ++ NI +G K K +D
Sbjct: 60 EGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELD- 118
Query: 741 SALQHDLD--LLPDRDLTEIGERGVNISGGQKQRVSMARA-------------------V 779
++ L L D + + + +SGGQ+QR+ +ARA +
Sbjct: 119 EIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPI 178
Query: 780 FNSCIKE---ELRGK-TRILVTNQLHFLPHV-DRIILVSEGMIKEEGSFEEL 826
I+E EL+ K T ++VT+ + + DR +G + E G E++
Sbjct: 179 ATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQI 230
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 4e-06
Identities = 47/180 (26%), Positives = 81/180 (45%), Gaps = 39/180 (21%)
Query: 629 MPNPPLEPELPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLV---- 684
+ + ++N NF + K L NINLDI + A +G +G GK++L+
Sbjct: 2 AMMSMVATAPSKIQVRNLNFYYG-KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFN 60
Query: 685 -------------SAML-GE--LPPLKDASVVIRGTVAYVPQISWIFNATLRKNILFG-- 726
+L GE L P +D + ++R V V Q F ++ NI FG
Sbjct: 61 RMYELYPEQRAEGEILLDGENILTPKQDIA-LLRAKVGMVFQKPTPFPMSIYDNIAFGVR 119
Query: 727 -------SEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAV 779
+E D W + +AL +++ +D ++ + G ++SGGQ+QR+ +AR +
Sbjct: 120 LFEKLSRAEMDERVEW-ALTKAALWNEV-----KD--KLHQSGYSLSGGQQQRLCIARGI 171
|
Length = 260 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 4e-06
Identities = 58/232 (25%), Positives = 104/232 (44%), Gaps = 56/232 (24%)
Query: 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV 700
++I+N + S+ +K L +++LDIP G + +I+G G GK++L+S M L +
Sbjct: 2 ITIENVSKSYGTK-VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMM-SRLLKKDSGEIT 59
Query: 701 IRG-------------TVAYVPQ-ISWIFNATLRKNILFG----SEFDPAKY-WKTVDVS 741
I G ++ + Q T+R + FG S+ K + ++ +
Sbjct: 60 IDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEA 119
Query: 742 ALQHDLDLLPDRDLTEIGERGVNISGGQKQR--VSMARA-----VF------NSCIK--- 785
L+ L DR L E +SGGQ+QR ++M A V N +K
Sbjct: 120 IEYLHLEDLSDRYLDE-------LSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSV 172
Query: 786 ----------EELRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEEL 826
+EL GKT ++V + ++F + D I+ + G + ++GS +E+
Sbjct: 173 QIMKILRRLADEL-GKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEI 223
|
Length = 252 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 4e-06
Identities = 57/250 (22%), Positives = 98/250 (39%), Gaps = 75/250 (30%)
Query: 641 VSIKNGNFSWDSKSP----TLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKD 696
++ + + K+P L ++N+ IP GS VAI+G TG GK++L+ + G L P
Sbjct: 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSG 62
Query: 697 ASVV----------------IRGTVAYVPQI--SWIFNATLRKNILFG------SEFDP- 731
+ +R V V Q +F T+ K+I FG SE D
Sbjct: 63 TVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAK 122
Query: 732 --AKYWKTVDVSALQHD-LDLLPDRDLTEIGERGVNISGGQKQRVSMA------------ 776
A+ +++ L + L P +SGGQ +RV++A
Sbjct: 123 QKAREM--IELVGLPEELLARSP-----------FELSGGQMRRVAIAGVLAMEPEVLVL 169
Query: 777 ---------------RAVFNSCIKEELRGKTRILVTNQLHFLPH-VDRIILVSEGMIKEE 820
+F KE +G T +LVT+ + D+I+++ +G + +
Sbjct: 170 DEPTAGLDPKGRKEMMEMFYKLHKE--KGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQ 227
Query: 821 GSFEELSKHG 830
G+ E+
Sbjct: 228 GTPREIFADP 237
|
Length = 290 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 5e-06
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 1243 IKFEDVVLRY--RPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRI 1293
++ E++ + + P + +SF V P E +GIVG +G+GKS++ AL +
Sbjct: 6 LEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGL 58
|
Length = 539 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 5e-06
Identities = 58/218 (26%), Positives = 97/218 (44%), Gaps = 57/218 (26%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLG-----------------ELPPLK-DAS 698
L +I+L + G V ++G +G GKT+L+ + G LPP K D
Sbjct: 20 LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYG 79
Query: 699 VVIRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEI 758
+V + + A P N T+ NI +G + + + LDL+ L
Sbjct: 80 IVFQ-SYALFP------NLTVADNIAYGLK--NRGMGRAEVAERVAELLDLV---GLPGS 127
Query: 759 GERGVN-ISGGQKQRVSMARAVFNSC---------------IKEELR----------GKT 792
+ +SGGQ+QRV++ARA+ S ++E LR G T
Sbjct: 128 ERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVT 187
Query: 793 RILVT-NQLHFLPHVDRIILVSEGMIKEEGSFEELSKH 829
I+VT +Q L DRI++++ G+I++ G+ +E+ +H
Sbjct: 188 TIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRH 225
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 6e-06
Identities = 60/244 (24%), Positives = 109/244 (44%), Gaps = 44/244 (18%)
Query: 651 DSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAM-LGELPPLKDASVVIRGT----- 704
L+N++L +P G + ++G +G GK++L+ + L E P SV++ G
Sbjct: 15 TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TSGSVIVDGQDLTTL 72
Query: 705 -----VAYVPQISWIFN--ATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTE 757
QI IF L +FG+ P + T + +LL L +
Sbjct: 73 SNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGD 132
Query: 758 IGER-GVNISGGQKQRVSMARAVFNS-----C------------------IKEELR--GK 791
+ N+SGGQKQRV++ARA+ ++ C +KE R G
Sbjct: 133 KHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGL 192
Query: 792 TRILVTNQLHFLPHV-DRIILVSEGMIKEEGSFEELSKHGR--LFQKLMENAGKMEEMEE 848
T +L+T+++ + + D + ++S G + E+G+ E+ H + L QK + + + E+
Sbjct: 193 TILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPKTPLAQKFIRSTLHLSIPED 252
Query: 849 REEK 852
+E+
Sbjct: 253 YQER 256
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 7e-06
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 1243 IKFEDVVLRYRPELP--PVLHGLSFTVSPSEKVGIVGRTGAGKSSMLN 1288
I+ +++ Y L G+S ++ E V IVG +G+GKS++LN
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLN 48
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 7e-06
Identities = 52/209 (24%), Positives = 85/209 (40%), Gaps = 50/209 (23%)
Query: 667 GSLVAIVGGTGEGKTSLVSAMLGELPP--LKDASVVIRGTV----------AYVPQISWI 714
G L+A++G +G GKT+L++A+ P SV++ G AYV Q
Sbjct: 51 GELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLF 110
Query: 715 FNA-TLRKNILFGSEF----DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGV--NISG 767
T+R++++F + K K V + L L + T IG G +SG
Sbjct: 111 IPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCAN-TRIGVPGRVKGLSG 169
Query: 768 GQKQRVS------------------------MARAVFNSCIKEELRGKTRILVTNQ---- 799
G+++R++ MA +V +GKT I +Q
Sbjct: 170 GERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSE 229
Query: 800 LHFLPHVDRIILVSEGMIKEEGSFEELSK 828
L L D+IIL++EG + GS ++
Sbjct: 230 LFEL--FDKIILMAEGRVAYLGSPDQAVP 256
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 7e-06
Identities = 37/106 (34%), Positives = 57/106 (53%), Gaps = 28/106 (26%)
Query: 759 GERGVNISGGQKQRVSMARA--------VFN---SCIKEEL-------------RGKTRI 794
G+ V++SGGQ+QRVS+ARA +F+ S + EL GKT +
Sbjct: 147 GKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMV 206
Query: 795 LVTNQLHFLPHV-DRIILVSEGMIKEEGSFEEL---SKHGRLFQKL 836
+VT+++ F HV +I + +G I+EEG+ E+L + RL Q L
Sbjct: 207 VVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGNPQSPRLQQFL 252
|
Length = 257 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 8e-06
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 1244 KFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
+ ED+ + Y PVL +SF V P E + IVG GAGKS++L A+ +++ G
Sbjct: 1 EVEDLTVSYGGH--PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGS 55
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 8e-06
Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 30/147 (20%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGT-VA-----YVP- 709
L +++L I G + + G +G GKT+L+ + G L P + V I G V +P
Sbjct: 18 LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSR-GQVRIAGEDVNRLRGRQLPL 76
Query: 710 ---QISWIF-------NATLRKNILFGSEFDPAKYWKTVD----VSALQHDLDLLPDRDL 755
+I +F + T+ +N+ E + K + V A + L D
Sbjct: 77 LRRRIGVVFQDFRLLPDRTVYENVALPLE---VRGKKEREIQRRVGAALRQVGLEHKADA 133
Query: 756 TEIGERGVNISGGQKQRVSMARAVFNS 782
+SGG++QRV++ARA+ NS
Sbjct: 134 FPE-----QLSGGEQQRVAIARAIVNS 155
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 9e-06
Identities = 45/163 (27%), Positives = 74/163 (45%), Gaps = 36/163 (22%)
Query: 641 VSIKNGNFSWDSKSP----TLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP--- 693
+ I+N + +P L N+N++I G V ++G TG GK++L+ + G L P
Sbjct: 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSG 62
Query: 694 --------LKDASVV---IRGTVAYVPQIS--WIFNATLRKNILFG------SEFD-PAK 733
+ D V IR V V Q +F T+ K+I FG SE + +
Sbjct: 63 KIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENR 122
Query: 734 YWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMA 776
+ +++ L D + D+ E +SGGQK+RV++A
Sbjct: 123 VKRAMNIVGL--DYEDYKDKSPFE-------LSGGQKRRVAIA 156
|
Length = 287 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 9e-06
Identities = 37/157 (23%), Positives = 60/157 (38%), Gaps = 43/157 (27%)
Query: 633 PLEPELPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELP 692
+ +++ + S L N++ G L AI+G +G GK++L++A+ G
Sbjct: 1 GVTLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRT 60
Query: 693 PLKD-ASVVIRGT----------VAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVS 741
L V+I G + YVPQ +IL + TV
Sbjct: 61 GLGVSGEVLINGRPLDKRSFRKIIGYVPQ----------DDILHPTL--------TVR-E 101
Query: 742 ALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARA 778
L L RG +SGG+++RVS+A
Sbjct: 102 TLMFAAKL-----------RG--LSGGERKRVSIALE 125
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 9e-06
Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 37/124 (29%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI--RGTVAYVPQISWI 714
L +++ +I G + I G +G GK+SL A L L P + + + ++PQ ++
Sbjct: 17 LKDLSFEIKPGDRLLITGPSGTGKSSLFRA-LAGLWPWGSGRIGMPEGEDLLFLPQRPYL 75
Query: 715 FNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVS 774
TLR+ +++ P W V +SGG++QR++
Sbjct: 76 PLGTLREQLIY-----P---WDDV--------------------------LSGGEQQRLA 101
Query: 775 MARA 778
AR
Sbjct: 102 FARL 105
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 1e-05
Identities = 21/60 (35%), Positives = 36/60 (60%)
Query: 1241 GSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
G I+F +V Y + P L ++F + + V +VGR+G+GKS++ N L R +++ GE
Sbjct: 340 GDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGE 399
|
Length = 582 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 1e-05
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
I+ E++ RY L +S + E+V ++G G+GKS++L L +++ GE
Sbjct: 4 IEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGE 60
|
Length = 235 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 1e-05
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 1243 IKFEDVVLRYRPELPP--VLHGLSFTVSPSEKVGIVGRTGAGKSSMLNAL 1290
++ +V Y L +S +V E V +VG +G GKS++L +
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRII 50
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 1e-05
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
I E++ L Y P+L +S T++P E++G+VGR GAGKS++L L +E + GE
Sbjct: 4 ITLENLSLAYGDR--PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGE 59
|
Length = 530 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 1e-05
Identities = 38/152 (25%), Positives = 68/152 (44%), Gaps = 38/152 (25%)
Query: 655 PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-------IRGTVAY 707
L +++ IP G V + G +G GK++L+ + GE P + +V ++G
Sbjct: 16 EALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGR--E 73
Query: 708 VP----QISWIF-------NATLRKNILFGSEF---DPAKYWKTV----DVSALQHDLDL 749
+P QI +F + T+ +N+ P + + V D+ L+H
Sbjct: 74 IPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARA 133
Query: 750 LPDRDLTEIGERGVNISGGQKQRVSMARAVFN 781
LP + +SGG++QRV++ARA+ N
Sbjct: 134 LPSQ-----------LSGGEQQRVAIARAIVN 154
|
Length = 223 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 1e-05
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
I+F +V Y P LH +S + E + + G +GAGK+++L L+ + RG+
Sbjct: 2 IEFHNVSKAY-PGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQ 58
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 1e-05
Identities = 53/209 (25%), Positives = 94/209 (44%), Gaps = 45/209 (21%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRG-TVAYVP----QI 711
L ++LDI G ++G +G GKT+L+ ++ +++ G + +P +
Sbjct: 16 LDGVSLDIKEGEFFTLLGPSGCGKTTLLR-LIAGFETPTSGEILLDGKDITNLPPHKRPV 74
Query: 712 SWIF-------NATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVN 764
+ +F + T+ +NI FG K K + LDL+ L R +
Sbjct: 75 NTVFQNYALFPHLTVFENIAFGLRL--KKLPKAEIKERVAEALDLV---QLEGYANRKPS 129
Query: 765 -ISGGQKQRVSMARAVFN-------------------SCIKEELR------GKTRILVT- 797
+SGGQ+QRV++ARA+ N ++ EL+ G T + VT
Sbjct: 130 QLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTH 189
Query: 798 NQLHFLPHVDRIILVSEGMIKEEGSFEEL 826
+Q L DRI ++++G I++ G+ EE+
Sbjct: 190 DQEEALTMSDRIAVMNKGKIQQIGTPEEI 218
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 1e-05
Identities = 52/224 (23%), Positives = 94/224 (41%), Gaps = 64/224 (28%)
Query: 651 DSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP------LKDASVV---- 700
P + +++L++ G + ++G G GKT+ + + GEL P + S+
Sbjct: 12 KGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRK 71
Query: 701 -IRGTVAYVPQISWIFNA-----TLRKNILF-----GSEFDPAKYWKTVDVSALQHDLDL 749
R ++ Y PQ F+A T+R+++ F G K +V L L L
Sbjct: 72 AARQSLGYCPQ----FDALFDELTVREHLRFYARLKGLPKSEIK----EEVELLLRVLGL 123
Query: 750 LPDRDLTEIGERGVNISGGQKQRVSMA------------------------RAVFNSCIK 785
+ +SGG K+++S+A RA+++ I
Sbjct: 124 TDKAN-KRAR----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWD-LIL 177
Query: 786 EELRGKTRILVTNQLH---FLPHVDRIILVSEGMIKEEGSFEEL 826
E +G++ IL T+ + L DRI ++S+G ++ GS +EL
Sbjct: 178 EVRKGRSIILTTHSMDEAEAL--CDRIAIMSDGKLRCIGSPQEL 219
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 1e-05
Identities = 44/166 (26%), Positives = 84/166 (50%), Gaps = 21/166 (12%)
Query: 629 MPNPPLEPE---LPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVS 685
+P P + P + I+N S+D + + +++L I G + A++G +G GK++L+
Sbjct: 5 IPRPQAKTRKALTPLLEIRNLTKSFDGQ-HAVDDVSLTIYKGEIFALLGASGCGKSTLLR 63
Query: 686 AMLGELPPLKDASVVIRGTVAYVPQ----ISWIFNA-------TLRKNILFGSEFDPAKY 734
+ G P ++ +++VP I+ +F + T+ +NI FG + D K
Sbjct: 64 MLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD--KL 121
Query: 735 WKTVDVSALQHDLDLLPDRDLTEIGERGVN-ISGGQKQRVSMARAV 779
K S + L L+ + E +R + +SGGQ+QRV++AR++
Sbjct: 122 PKAEIASRVNEMLGLV---HMQEFAKRKPHQLSGGQRQRVALARSL 164
|
Length = 377 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 2e-05
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
I+ ++ +Y + L G+SF V P E G++G GAGK+++L L +++ GE
Sbjct: 5 IEVRNLTKKYGGDKT-ALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGE 61
|
Length = 293 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 2e-05
Identities = 13/60 (21%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 1243 IKFEDVVLRYRPEL--PPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
++ +++ + + L +SF++ E +G+VG +G+GKS++ A+ +++ G
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 2e-05
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 1222 SEAPGMVESNRPPPAWPSSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGA 1281
E P E + P + I+ ++V +R + +L LS+ V+P E IVG GA
Sbjct: 11 VELPEPKEPKKRHPIEINEPLIELKNVSVRRNGK--KILGDLSWQVNPGEHWAIVGPNGA 68
Query: 1282 GKSSMLNAL 1290
GK+++L+ L
Sbjct: 69 GKTTLLSLL 77
|
Length = 257 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 2e-05
Identities = 43/152 (28%), Positives = 68/152 (44%), Gaps = 24/152 (15%)
Query: 649 SWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTV--- 705
++ + L +++L I G VA++G +G GK++L+ + G + P SV+I GT
Sbjct: 9 TYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTS-GSVLIDGTDINK 67
Query: 706 -------AYVPQISWIF---NATLR----KNILFGSEFDPAKYWKT----VDVSALQHDL 747
QI IF N R +N+L G W++ Q L
Sbjct: 68 LKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGR-LGRRSTWRSLFGLFPKEEKQRAL 126
Query: 748 DLLPDRDLTE-IGERGVNISGGQKQRVSMARA 778
L L + +R +SGGQ+QRV++ARA
Sbjct: 127 AALERVGLLDKAYQRADQLSGGQQQRVAIARA 158
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 2e-05
Identities = 55/263 (20%), Positives = 95/263 (36%), Gaps = 49/263 (18%)
Query: 1046 LLSTFVLIGIVSTISLWAIMPLLI-LFY------AAYLYYQSTAREVKRLDSIT------ 1092
++ ++ I +++ I LI L + A + Y RE ++I
Sbjct: 208 MVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLVRVRE--NAEAIALYRGEK 265
Query: 1093 --RSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLET 1150
R + +F + R+ + IR T WL++ L
Sbjct: 266 VERRRLDDRFD---------AVLGNWRRL-------VRAQIRLTWFQLGYG-WLSVVLPI 308
Query: 1151 LGGIMIWL---IATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENS 1207
L + I +MQ A QV S++ + I + + +LR A +
Sbjct: 309 LIAAPRYFSGQITFGGLMQAVGAFGQVH--SSLSWFIDNYDAIADWRATLLRLAEFR-QA 365
Query: 1208 LNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSGSIKFEDVVLRYRPELPPVLHGLSFTV 1267
L A + + R + I E++ LR P+ +L L+F V
Sbjct: 366 LEAAQM------DTEKPARTGR--RIDFDDNADHGITLENLSLR-TPDGQTLLSELNFEV 416
Query: 1268 SPSEKVGIVGRTGAGKSSMLNAL 1290
P E++ I G +GAGK+S+L AL
Sbjct: 417 RPGERLLITGESGAGKTSLLRAL 439
|
Length = 604 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 2e-05
Identities = 29/115 (25%), Positives = 44/115 (38%), Gaps = 22/115 (19%)
Query: 681 TSLVSAMLGELPP------LKDASVV-------IRGTVAYVPQISWIF-NATLRKNILFG 726
++L+ + G L P L +R + V Q +F T+R+N+ FG
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 727 SEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN 781
A + L D E +SGGQKQRV++ARA+
Sbjct: 61 LRDKEADAR----AEEALERVGLPDFLDR----EPVGTLSGGQKQRVAIARALLK 107
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 2e-05
Identities = 51/220 (23%), Positives = 97/220 (44%), Gaps = 55/220 (25%)
Query: 653 KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDA-SVVIRGT------- 704
K +++++L++ G +V ++G G GKT+ ++G + P D+ +++
Sbjct: 16 KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRP--DSGKILLDDEDITKLPM 73
Query: 705 -------VAYVPQISWIF-NATLRKNILFGSEF---DPAKYWKTVDVSALQHDLDLLPDR 753
+ Y+PQ + IF T+ NI+ E D K + ++ AL + + R
Sbjct: 74 HKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLR 133
Query: 754 DLTEIGERGVNISGGQKQRVSMARA---------------------VFNSCIKE---ELR 789
D + ++SGG+++RV +ARA V + I+ L+
Sbjct: 134 DS-----KAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVID--IQRIIKHLK 186
Query: 790 GK-TRILVT--NQLHFLPHVDRIILVSEGMIKEEGSFEEL 826
+ +L+T N L DR ++S+G + EGS EE+
Sbjct: 187 DRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEI 226
|
Length = 243 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 2e-05
Identities = 34/156 (21%), Positives = 69/156 (44%), Gaps = 24/156 (15%)
Query: 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP------- 693
+ ++N + K L ++L + G + ++G G GKT+L+ + PP
Sbjct: 1 LQLENLTKRYGKKR-ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRI 58
Query: 694 ----LKDASVVIRGTVAYVPQ-ISWIFNATLRKNILFGSEF-DPAKYWKTVDVSALQHDL 747
+ +R + Y+PQ N T+R EF D + K + ++ +
Sbjct: 59 DGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVR-------EFLDYIAWLKGIPSKEVKARV 111
Query: 748 D-LLPDRDLTEIGERGVN-ISGGQKQRVSMARAVFN 781
D +L +L + ++ + +SGG ++RV +A+A+
Sbjct: 112 DEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVG 147
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 51/221 (23%), Positives = 88/221 (39%), Gaps = 49/221 (22%)
Query: 649 SWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRG----- 703
S+ SK + +++ + G + ++G G GKT+L+ M+ L V I G
Sbjct: 10 SYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLR-MIATLLIPDSGKVTIDGVDTVR 68
Query: 704 -TVAYVPQISWIFNA-------TLRKNIL-FGSEFDPAKYWKTVDVSALQHDLDLLPDRD 754
+I +F T R+N+ F ++ ++ L L LL D
Sbjct: 69 DPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLD 128
Query: 755 LTEIGERGVNISGGQKQRVSMARAV-----------------------FNSCIKEELRGK 791
R S G KQ+V++ARA+ F+ IK +L+ +
Sbjct: 129 -----RRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIK-QLKNE 182
Query: 792 TRILVTNQLHFLPHV----DRIILVSEGMIKEEGSFEELSK 828
R ++ + H + V DR+I++ +G + EGS E L
Sbjct: 183 GRAVIFSS-HIMQEVEALCDRVIVLHKGEVVLEGSIEALDA 222
|
Length = 245 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 3e-05
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 1258 PVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNAL 1290
+L +S P E I+G +GAGKS++LNAL
Sbjct: 23 QLLKNVSGKAKPGELTAIMGPSGAGKSTLLNAL 55
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 3e-05
Identities = 52/209 (24%), Positives = 93/209 (44%), Gaps = 53/209 (25%)
Query: 661 NLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRG-----TVAYVPQISWIF 715
+L +P G +VAI+G +G GK++L++ + G P ++I G + +S +F
Sbjct: 19 DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETP-ASGEILINGVDHTASPPAERPVSMLF 77
Query: 716 -------NATLRKNILFGSEFDP-----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGV 763
+ T+ +NI G P A+ + V+ +A Q L R E
Sbjct: 78 QENNLFAHLTVAQNIGLG--LSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGE------ 129
Query: 764 NISGGQKQRVSMARAV------------FNSC---IKEEL----------RGKTRILVTN 798
+SGGQ+QRV++AR + F++ ++ E+ R T ++VT+
Sbjct: 130 -LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTH 188
Query: 799 QLHFLPHV-DRIILVSEGMIKEEGSFEEL 826
+ DR++ + G I +GS +EL
Sbjct: 189 HPEDAARIADRVVFLDNGRIAAQGSTQEL 217
|
Length = 231 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 3e-05
Identities = 60/243 (24%), Positives = 101/243 (41%), Gaps = 62/243 (25%)
Query: 642 SIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLV---SAMLGELPPLK--- 695
S+KN N + SK L +INLDI + A +G +G GK++ + + M +P K
Sbjct: 7 SVKNLNLWYGSKQ-ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKG 65
Query: 696 ------------DASVVI-RGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSA 742
D +VV+ R V V Q F ++ N+ +G K ++
Sbjct: 66 ELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGP--------KLHGLAK 117
Query: 743 LQHDLDLLPDRDLTEIG----------ERGVNISGGQKQRVSMARA-------------- 778
+ LD + ++ LT +G + +SGGQ+QR+ +ARA
Sbjct: 118 NKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPC 177
Query: 779 ---------VFNSCIKEELRGKTRILVTNQLHFLPHV-DRIILVSEGMIKEEGSFEELSK 828
V + I+E + T I+VT+ + V DR+ G I E + +E+ K
Sbjct: 178 SALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFK 237
Query: 829 HGR 831
+ +
Sbjct: 238 NPQ 240
|
Length = 251 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 3e-05
Identities = 43/161 (26%), Positives = 70/161 (43%), Gaps = 31/161 (19%)
Query: 642 SIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSA---MLGELPPLKDAS 698
+N N W + L NINLDI + AI+G +G GK++ + M+ +P +K
Sbjct: 26 DTQNLNL-WYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTG 84
Query: 699 VVI----------------RGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSA 742
++ R V V Q F ++ N+ +G + K KT+D
Sbjct: 85 KILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLD-EI 143
Query: 743 LQHDL------DLLPDRDLTEIGERGVNISGGQKQRVSMAR 777
++ L D L DR + + +SGGQ+QR+ +AR
Sbjct: 144 VEKSLRGAAIWDELKDR----LHDNAYGLSGGQQQRLCIAR 180
|
Length = 271 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 3e-05
Identities = 52/216 (24%), Positives = 94/216 (43%), Gaps = 49/216 (22%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP-----------LKDASVV-IRGT 704
+ ++NL I G + ++G +G GKT+ + + + P + D V +R
Sbjct: 17 VDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRK 76
Query: 705 VAYVPQISWIF-NATLRKNILFGSE---FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGE 760
+ YV Q +F + T+ +NI + +D + K D L + L P E +
Sbjct: 77 IGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRAD--ELLDLVGLDPS----EYAD 130
Query: 761 RGVN-ISGGQKQRVSMARA-------------------VFNSCIKEELR------GKTRI 794
R + +SGGQ+QRV +ARA + ++EE++ GKT +
Sbjct: 131 RYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIV 190
Query: 795 LVTNQL-HFLPHVDRIILVSEGMIKEEGSFEELSKH 829
VT+ + L DRI ++ G I + + +E+ +
Sbjct: 191 FVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226
|
Length = 309 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 3e-05
Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 5/88 (5%)
Query: 694 LKDASVVIRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTV-DVSALQHDLDLLPD 752
LKD +R + V Q +FN ++ +NI FG E + K +A+ ++ LP+
Sbjct: 1291 LKD----LRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPN 1346
Query: 753 RDLTEIGERGVNISGGQKQRVSMARAVF 780
+ T +G G ++SGGQKQR+++ARA+
Sbjct: 1347 KYDTNVGPYGKSLSGGQKQRIAIARALL 1374
|
Length = 1466 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 3e-05
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 25/140 (17%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGEL-----------PPLKDASVVIRGTV 705
L ++LD+ G ++AI+G G GK++L+ A+ GEL PL
Sbjct: 17 LDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARH 76
Query: 706 -AYVPQISWI-FNATLRKNILFG-----SEFDPAKYWKTVDVSALQHDLDLLPDRDLTEI 758
A +PQ S + F T+++ + G S +P + + + DL L RD +
Sbjct: 77 RAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTL 136
Query: 759 GERGVNISGGQKQRVSMARA 778
SGG++QRV +AR
Sbjct: 137 -------SGGEQQRVQLARV 149
|
Length = 259 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 3e-05
Identities = 51/235 (21%), Positives = 92/235 (39%), Gaps = 50/235 (21%)
Query: 639 PAVSIKNGNFSWDSKSP-TLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDA 697
+ KN +F + S + TL +++ +IP G +IVG G GK+++ M+G K
Sbjct: 6 SIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKV-KSG 64
Query: 698 SVVIR----------------GTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVD-V 740
+ G V P ++ + ++ ++ FG E Y + V
Sbjct: 65 EIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFV-GSIVKYDVAFGLENHAVPYDEMHRRV 123
Query: 741 SALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMA-----------------------R 777
S +D+L D +SGGQKQRV++A R
Sbjct: 124 SEALKQVDMLERAD-----YEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDAR 178
Query: 778 AVFNSCIKE--ELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHG 830
+++ T I +T+ L D +I++++G + +EG+ E+ H
Sbjct: 179 QNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHA 233
|
Length = 269 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 3e-05
Identities = 51/217 (23%), Positives = 89/217 (41%), Gaps = 53/217 (24%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP---------------LKDASV-V 700
+ ++N + G AIVG TG GK++L+ + L P KD +
Sbjct: 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82
Query: 701 IRGTVAYVPQI--SWIFNATLRKNILFGSEFDPAKYWKTVD-VSALQHDL--DLLPDRDL 755
+R + V Q S +F T+ + I+FG P + +D V H L DL RD+
Sbjct: 83 VRKRIGMVFQFPESQLFEDTVEREIIFG----PKNFKMNLDEVKNYAHRLLMDLGFSRDV 138
Query: 756 TEIGERGVNISGGQKQRVSM-----------------------ARAVFNSCIKE--ELRG 790
+SGGQ +++++ ++ +K
Sbjct: 139 MSQSP--FQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDEN 196
Query: 791 KTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEEL 826
KT ILV++ ++ + + D +I++ EG I + S +EL
Sbjct: 197 KTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKEL 233
|
Length = 286 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 4e-05
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 1220 LPSEAPGMVESNRPPPAWPSSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRT 1279
+ +EAP + + + P P G + Y P L ++FT+ P + +GI G T
Sbjct: 293 MLAEAPVVKDGSEPVPEGR--GELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPT 350
Query: 1280 GAGKSSMLNALFRIVELERGE 1300
G+GKS++L+ + R ++ G+
Sbjct: 351 GSGKSTLLSLIQRHFDVSEGD 371
|
Length = 569 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 4e-05
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSS---MLNALFR 1292
IK E+V Y L +SF ++ E V I+G G+GKS+ +L L +
Sbjct: 8 IKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK 60
|
Length = 271 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 4e-05
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
++ E V + VL ++ +V E V I+G +G GKS++L + + + GE
Sbjct: 4 LEIEGVSKSFGGV--EVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGE 59
|
Length = 248 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 4e-05
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 1242 SIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
I+ +++ Y P L ++ ++ E V I+G +GAGKS++L +L +V+ GE
Sbjct: 3 MIEVKNLSKTY-PGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGE 60
|
Length = 258 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 4e-05
Identities = 49/226 (21%), Positives = 90/226 (39%), Gaps = 57/226 (25%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAY--------- 707
L +N + G VA++G +G GK++++ +L L P+ + + + G Y
Sbjct: 16 LDGLNFSVAAGEKVALIGPSGSGKSTILR-ILMTLEPIDEGQIQVEGEQLYHMPGRNGPL 74
Query: 708 --------------VPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDR 753
+ + FN K +L P A + ++LL
Sbjct: 75 VPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELL--- 131
Query: 754 DLTEIGERG----VNISGGQKQRVSMARAV-----------FNSCIKEELRGK------- 791
D+ + ++ +SGGQ+QRV++ARA+ S + EL G+
Sbjct: 132 DMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRR 191
Query: 792 -------TRILVTNQLHFLPHV-DRIILVSEGMIKEEGSFEELSKH 829
T +LVT+++ F DR+ +G I E+G +E+ +
Sbjct: 192 LASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFRQ 237
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 4e-05
Identities = 39/170 (22%), Positives = 69/170 (40%), Gaps = 32/170 (18%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKD--ASVVIRGTVAYVPQISWI 714
L+N+N I G +V ++G +G GK++L+S M+G L + + ++ +
Sbjct: 18 LANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQ-----RLDML 72
Query: 715 FNATLRKNILFGSE--FDPAKYWKTVDVSALQHDLD-----LLPDRDLTEIGERGV---- 763
A + ILF F + + + AL L + L G G
Sbjct: 73 PAAQRQIGILFQDALLFPHLSVGQNL-LFALPATLKGNARRNAANAALERSGLDGAFHQD 131
Query: 764 --NISGGQKQRVSMARAVFN-----------SCIKEELRGKTRILVTNQL 800
+SGGQ+ RV++ RA+ S + LR + R V +++
Sbjct: 132 PATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEV 181
|
Length = 213 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 5e-05
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
I+ ++ RY L +S TV E G++G GAGK++++ + +++ + GE
Sbjct: 1 IEVRNLSKRYGK--KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGE 56
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 5e-05
Identities = 48/243 (19%), Positives = 86/243 (35%), Gaps = 82/243 (33%)
Query: 654 SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP----------LKDASVV--- 700
P + +++ ++ G ++ IVG +G GK++L A++G LP L ++
Sbjct: 22 VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLS 81
Query: 701 ------IRGT-VAYVPQ-----------ISWIFNATLRKNILFGSEFDPAKYWKTVDVSA 742
+RG +A + Q I LR + + + ++
Sbjct: 82 EREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVG 141
Query: 743 LQHDL--DLLPDRDLTEIGERGVNISGGQKQRVSMARAVFNSCIKEEL------------ 788
L D P L SGG +QRV +A A+ +K +L
Sbjct: 142 LPDPERRDRYP-HQL----------SGGMRQRVMIAMAL---ALKPKLLIADEPTTALDV 187
Query: 789 ----------------RGKTRILVTNQLHFLPHV----DRIILVSEGMIKEEGSFEELSK 828
G + +T H L V DR++++ +G I E G EE+
Sbjct: 188 TTQAQILDLLKDLQRELGMAVLFIT---HDLGVVAELADRVVVMYKGEIVETGPTEEILS 244
Query: 829 HGR 831
+ +
Sbjct: 245 NPQ 247
|
Length = 539 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 5e-05
Identities = 42/218 (19%), Positives = 84/218 (38%), Gaps = 42/218 (19%)
Query: 610 ANVSLQRLEELLLAEERILM-PNPPLEPELPAVSIKNGNFSWDSKSPTLSNINLDIPVGS 668
A + + L EL++ E +L PP P + +++ + + +++ ++ G
Sbjct: 226 AETTEEELAELMVGREVVLRVVKPPSTPGEVVLEVEDLSVKDRRGVTAVKDVSFEVRAGE 285
Query: 669 LVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGT---------------VAYVP---- 709
+V I G G G++ LV A+ G P +++ G +AYVP
Sbjct: 286 IVGIAGVAGNGQSELVEAISGLRKP-ASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRH 344
Query: 710 QISWIFNATLRKNILFGSEFDPAKY-WKTVDVSA-------LQHDLDLLPDRDLTEIGER 761
+ + +L +N++ G +D A L + D+
Sbjct: 345 GHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPAR-- 402
Query: 762 GVNISGGQKQRVSMARAVFNSCIKEELRGKTRILVTNQ 799
++SGG +Q++ +AR EL + +L+ Q
Sbjct: 403 --SLSGGNQQKLILAR---------ELARRPDLLIAAQ 429
|
Length = 501 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 5e-05
Identities = 42/163 (25%), Positives = 77/163 (47%), Gaps = 25/163 (15%)
Query: 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLK--- 695
P + I+ NF + K L NIN+D P + AI+G +G GK++L+ A L + +
Sbjct: 3 PKIKIRGVNFFY-HKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRA-LNRMNDIVSGA 60
Query: 696 --DASVVIRGTVAYVPQISWIFNATLRKNILF-------GSEFDPAKYWKTVDVSALQHD 746
+ +V++ Y P + + N R ++F S FD + + + Q
Sbjct: 61 RLEGAVLLDNENIYSPNLD-VVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSR 119
Query: 747 LDLLPDRDLTE----------IGERGVNISGGQKQRVSMARAV 779
LD + ++ L + + + G+ +SGGQ+QR+ +AR +
Sbjct: 120 LDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVL 162
|
Length = 251 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 5e-05
Identities = 55/224 (24%), Positives = 91/224 (40%), Gaps = 63/224 (28%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP------LKDASVVIRGT------ 704
L ++L + G + A++G G GK++L+ + G PP + V
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAA 83
Query: 705 -VAYVPQ-ISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHD----LD-LLPDRDL-T 756
+A V Q +S + N ++ +NI G E P + + +D A++ L L D D T
Sbjct: 84 GIATVHQELSLVPNLSVAENIFLGRE--PTRRFGLIDRKAMRRRARELLARLGLDIDPDT 141
Query: 757 EIGERGVNISGGQKQRVSMARAV-FNSCI------------KE---------ELR--GKT 792
+G ++S Q+Q V +ARA+ F++ + KE L+ G
Sbjct: 142 LVG----DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVA 197
Query: 793 RILVTNQLHFLPHV----DRII------LVSEGMIKEEGSFEEL 826
I ++ H L V DRI +V E S +EL
Sbjct: 198 IIYIS---HRLDEVFEIADRITVLRDGRVVGTRPTAAETSEDEL 238
|
Length = 500 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 5e-05
Identities = 38/139 (27%), Positives = 66/139 (47%), Gaps = 26/139 (18%)
Query: 655 PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP------LKDASVV----IRGT 704
P L +INL + G L+ ++G +G GKT+L++ + G +P L V RG
Sbjct: 15 PALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGV 74
Query: 705 V----AYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGE 760
V +P W ++ N+ FG + + + ++++ +L L +
Sbjct: 75 VFQNEGLLP---W---RNVQDNVAFGLQLAGVEKMQRLEIA-----HQMLKKVGLEGAEK 123
Query: 761 RGV-NISGGQKQRVSMARA 778
R + +SGGQ+QRV +ARA
Sbjct: 124 RYIWQLSGGQRQRVGIARA 142
|
Length = 255 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 5e-05
Identities = 28/144 (19%), Positives = 58/144 (40%), Gaps = 24/144 (16%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDA-SVVIRGT----------- 704
L +++ + G + ++G G GKT+L + + G L P + SV+ G
Sbjct: 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRP--TSGSVLFDGEDITGLPPHEIA 73
Query: 705 ---VAYVPQISWIF-NATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGE 760
+ QI +F T+ +N++ ++ + + + L +G
Sbjct: 74 RLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGL 133
Query: 761 RGV------NISGGQKQRVSMARA 778
+ +S GQ++R+ +ARA
Sbjct: 134 ADLADRPAGELSYGQQRRLEIARA 157
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 6e-05
Identities = 43/161 (26%), Positives = 71/161 (44%), Gaps = 29/161 (18%)
Query: 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAM-LGELPPLKDAS 698
++ + N + + L +I LD P G + ++G +G GK+SL+ + L E+P + +
Sbjct: 2 SIQLNGINCFYGA-HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMP--RSGT 58
Query: 699 VVIRGT---VAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDV--------------- 740
+ I G + P I LR+N+ G F W + V
Sbjct: 59 LNIAGNHFDFSKTPSDKAI--RELRRNV--GMVFQQYNLWPHLTVQQNLIEAPCRVLGLS 114
Query: 741 --SALQHDLDLLPDRDLTEIGER-GVNISGGQKQRVSMARA 778
AL LL L +R +++SGGQ+QRV++ARA
Sbjct: 115 KDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARA 155
|
Length = 242 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 6e-05
Identities = 40/161 (24%), Positives = 73/161 (45%), Gaps = 32/161 (19%)
Query: 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV 700
V ++ +F+ ++ NI+L +P G + AI+G +G GKT+L+ + G++ P
Sbjct: 8 VDMRGVSFTRGNR-CIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAP------- 59
Query: 701 IRGTVAY----VPQIS--WIFNATLRKNILF--GSEFDPAKYWKTVDVSALQHDLDLLPD 752
G + + +P +S ++ R ++LF G+ F + V +H LP
Sbjct: 60 DHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREH--TQLPA 117
Query: 753 R--------DLTEIGERGV------NISGGQKQRVSMARAV 779
L +G RG +SGG +R ++ARA+
Sbjct: 118 PLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAI 158
|
Length = 269 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 7e-05
Identities = 36/143 (25%), Positives = 63/143 (44%), Gaps = 34/143 (23%)
Query: 655 PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI-----------RG 703
L +++L I G LV ++G +G GKT+L++ + G + P S+ + RG
Sbjct: 19 SALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTP-SRGSIQLNGRRIEGPGAERG 77
Query: 704 TV----AYVPQISWIFNATLRKNILFGSEF---DPAKYWKTVDVSALQHDLDLLPDRDLT 756
V A +P W+ + N+ FG + + A+ + +L L
Sbjct: 78 VVFQNEALLP---WL---NVIDNVAFGLQLRGIEKAQRREIAH--------QMLALVGLE 123
Query: 757 EIGERGV-NISGGQKQRVSMARA 778
+ + +SGG +QRV +ARA
Sbjct: 124 GAEHKYIWQLSGGMRQRVGIARA 146
|
Length = 259 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 7e-05
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 1259 VLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
L +SF V E++G++GR GAGKS++L L I + G
Sbjct: 37 ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGT 78
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 7e-05
Identities = 54/204 (26%), Positives = 92/204 (45%), Gaps = 53/204 (25%)
Query: 661 NLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP------LKDASVVIRGTVAYVPQISWI 714
+L++ G +VAI+G +G GK++L++ + G + P + D S G Y +S +
Sbjct: 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHT--GLAPYQRPVSML 75
Query: 715 FNA-------TLRKNILFGS----EFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGV 763
F T+R+NI G + + + K VD A Q + DR L E
Sbjct: 76 FQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDA-AQQVGIADYLDR-LPE------ 127
Query: 764 NISGGQKQRVSMAR---------------AVFNSCIKEEL----------RGKTRILVTN 798
+SGGQ+QRV++AR + + ++EE+ R +T ++VT+
Sbjct: 128 QLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTH 187
Query: 799 QLHFLPHV-DRIILVSEGMIKEEG 821
L + +I +VS+G IK
Sbjct: 188 HLSDARAIASQIAVVSQGKIKVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 8e-05
Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 1242 SIKFEDVVLRY--RPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNAL 1290
+ ++ + Y L+ +S + E +GIVG +G+GKS++ L
Sbjct: 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLL 53
|
Length = 252 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 8e-05
Identities = 41/164 (25%), Positives = 68/164 (41%), Gaps = 29/164 (17%)
Query: 630 PNPPLEPELPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLG 689
P P P P +S + +F + N+N I + S +A+VG G GK++++ + G
Sbjct: 498 PTPDDRPGPPIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISG 557
Query: 690 ELPPLKDASVVIRGTVAYVPQISW-IFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLD 748
EL P GTV ++ +F+ + S +P Y +
Sbjct: 558 ELQP-------SSGTVFRSAKVRMAVFSQHHVDGLDLSS--NPLLY--------MMRCFP 600
Query: 749 LLPDRDL-TEIGERGVN----------ISGGQKQRVSMARAVFN 781
+P++ L +G GV +SGGQK RV+ A+ F
Sbjct: 601 GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK 644
|
Length = 718 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 8e-05
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERG 1299
++ E++ Y P L ++ ++P E V I+G +GAGKS++L + R+VE G
Sbjct: 2 LEVENLSKVY-PNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSG 57
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 8e-05
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP 693
L +++L + G +VAI+G G GK++L+ A+ GEL P
Sbjct: 18 LDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSP 54
|
Length = 258 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 9e-05
Identities = 38/151 (25%), Positives = 63/151 (41%), Gaps = 37/151 (24%)
Query: 1143 WLTIRLETLGGIMIWLIATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQ-- 1200
WL I+ E G+MI A + +L L +L +Q
Sbjct: 266 WLVIKGEITPGMMI--------------------AGS--ILSGRALAPIDLAIANWKQFV 303
Query: 1201 ASRAENSLNAVERVGTYID-LPSEAPGMVESNRPPPAWPSSGSIKFEDVVLRYRPELPPV 1259
A+R + +R+ + LP+ A M P PA G++ E + + P+
Sbjct: 304 AARQ-----SYKRLNELLAELPAAAERM-----PLPA--PQGALSVERLTAAPPGQKKPI 351
Query: 1260 LHGLSFTVSPSEKVGIVGRTGAGKSSMLNAL 1290
L G+SF + E +GI+G +G+GKS++ L
Sbjct: 352 LKGISFALQAGEALGIIGPSGSGKSTLARLL 382
|
Length = 580 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 9e-05
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISWIFN 716
L +++ ++P G + ++G G GK++L+ + G PP +V +RG V+ + + FN
Sbjct: 38 LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDS-GTVTVRGRVSSLLGLGGGFN 96
Query: 717 ATL--RKNILF 725
L R+NI
Sbjct: 97 PELTGRENIYL 107
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 9e-05
Identities = 35/142 (24%), Positives = 64/142 (45%), Gaps = 21/142 (14%)
Query: 653 KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRG--------- 703
K L ++L I G +V ++G G GKT+L+ + G+ P +V G
Sbjct: 17 KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGD-PRATSGRIVFDGKDITDWQTA 75
Query: 704 -----TVAYVPQISWIFN-ATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTE 757
VA VP+ +F+ T+ +N+ G F ++ ++ +L P R
Sbjct: 76 KIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQE----RIKWVYELFP-RLHER 130
Query: 758 IGERGVNISGGQKQRVSMARAV 779
+R +SGG++Q +++ RA+
Sbjct: 131 RIQRAGTMSGGEQQMLAIGRAL 152
|
Length = 237 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 9e-05
Identities = 43/207 (20%), Positives = 76/207 (36%), Gaps = 65/207 (31%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISWIFN 716
+ ++ I G + +VG +G GK++L +LG P ++ G
Sbjct: 29 VDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPT-SGEILFEG------------- 74
Query: 717 ATLRKNILFGSEFDPAKYWKTV-----DVSALQHDLDLLPDRDLTEIGERGVNISGGQKQ 771
K+I + + V V + L P +SGGQ+Q
Sbjct: 75 ----KDITK---LSKEERRERVLELLEKVGLPEEFLYRYPH-----------ELSGGQRQ 116
Query: 772 RVSMARA------------------------VFN--SCIKEELRGKTRILVTNQLHFLPH 805
R+ +ARA + N ++EEL G T + +++ L + +
Sbjct: 117 RIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEEL-GLTYLFISHDLSVVRY 175
Query: 806 V-DRIILVSEGMIKEEGSFEELSKHGR 831
+ DRI ++ G I E G EE+ +
Sbjct: 176 ISDRIAVMYLGKIVEIGPTEEVFSNPL 202
|
Length = 268 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 1e-04
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 1210 AVERVGTYIDLPSEAPGMVESNRPPPAWPSSGSIKFEDVVLRYRPELPPVLHGLSFTVSP 1269
A E + T+++ P P A +I+ ED+ + P+ + L+FT+
Sbjct: 320 AAESLVTFLETPLAHPQ---QGEKELASNDPVTIEAEDLEI-LSPDGKTLAGPLNFTLPA 375
Query: 1270 SEKVGIVGRTGAGKSSMLNAL 1290
+++ +VG +GAGK+S+LNAL
Sbjct: 376 GQRIALVGPSGAGKTSLLNAL 396
|
Length = 588 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 1e-04
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
I+ +++ + VL G+ TV E V I+G +G+GKS++L + + E + G
Sbjct: 1 IEIKNLHKSFGDF--HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGT 56
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 1e-04
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 1258 PVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFR 1292
PVL +S TV+ E V + G +GAGKS++L +L+
Sbjct: 22 PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYA 56
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 1e-04
Identities = 67/295 (22%), Positives = 110/295 (37%), Gaps = 72/295 (24%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI--------------- 701
+++ +L I G + I+G +G GK++ V ML L + I
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVR-MLNRLIEPTAGQIFIDGENIMKQSPVELRE 67
Query: 702 --RGTVAYVPQISWIF-NATLRKNILFGSEFD--PAKYWKTVDVSALQHDLDLLPDRDLT 756
R + V Q +F + T+ +N G E P + K + L+LL L
Sbjct: 68 VRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERK-------EKALELLKLVGLE 120
Query: 757 EIGERGVN-ISGGQKQRVSMARAVFN-------------------SCIKEELR------G 790
E R + +SGG +QRV +ARA+ +++EL+
Sbjct: 121 EYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQ 180
Query: 791 KTRILVTNQL-HFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLMENAGKMEEMEER 849
KT + +T+ L + DRI+++ G I + G+ +E+ L A E +EE
Sbjct: 181 KTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEI---------LRNPAN--EYVEEF 229
Query: 850 EEKDDSINSNQEVSKPVANRAVQVNEFPKNESYTKKGKRGRSVLVKQEERETGIV 904
K D A R Q KG R L++ E ++ V
Sbjct: 230 IGKVDLSQVFD------AERIAQRMNTGPITKTADKGPRSALQLMRDERVDSLYV 278
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 1e-04
Identities = 38/169 (22%), Positives = 74/169 (43%), Gaps = 46/169 (27%)
Query: 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAM--LGELPP--LK 695
+++ G+F + N+ LDIP + A +G +G GK++++ L +L P
Sbjct: 15 NLNVYYGSFL------AVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRV 68
Query: 696 DASVVIRGTVAYVPQISWI---------------FNATLRKNILFGSEFDPAKYWKTVDV 740
+ V G Y P + + F ++ NI +G+ +
Sbjct: 69 EGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGAR-----------I 117
Query: 741 SALQHDLDLLPDRDLTE----------IGERGVNISGGQKQRVSMARAV 779
+ + D+D L +R L + + + G+++SGGQ+QR+ +ARA+
Sbjct: 118 NGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAI 166
|
Length = 264 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 2e-04
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 1259 VLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
+L G+S V E ++GR G GK+++L L ++ ++ G
Sbjct: 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGS 56
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 2e-04
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 1243 IKFEDV--VLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSS---MLNAL 1290
I+ ++V V L +S +V E GI+GR+GAGKS+ +N L
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGL 54
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 2e-04
Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 21/155 (13%)
Query: 641 VSIKNGNFSWDSK-SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASV 699
+ I + +++ P L ++ I G V I G TG GK+SL A + + D +
Sbjct: 20 IKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFF-RMVDIFDGKI 78
Query: 700 VIRGT-VAYVP------------QISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHD 746
VI G ++ +P Q +F+ ++R N+ + + W+ ++++ L++
Sbjct: 79 VIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNM 138
Query: 747 LDLLP---DRDLTEIGERGVNISGGQKQRVSMARA 778
+ LP D +TE GE N S GQ+Q +ARA
Sbjct: 139 VKSLPGGLDAVVTEGGE---NFSVGQRQLFCLARA 170
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 2e-04
Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
++ ++V RY + VL+ +S + E V ++G +G+GKS++L + + E + G
Sbjct: 1 LELKNVSKRYGQKT--VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGS 56
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 2e-04
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSS---MLNALFR 1292
I+ E + RY L +SF+V E V IVG G+GKS+ +LN L
Sbjct: 6 IRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL 58
|
Length = 279 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 2e-04
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 1241 GSIKFEDVVLRY--RPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELER 1298
G I+ DV RY RP +P + L+F+ + IVG TG+GKS++++ L R +L+
Sbjct: 1164 GKIEIMDVNFRYISRPNVP-IYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKN 1222
Query: 1299 GENI 1302
+I
Sbjct: 1223 DHHI 1226
|
Length = 1466 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 2e-04
Identities = 65/288 (22%), Positives = 105/288 (36%), Gaps = 96/288 (33%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLG--ELPPLKDASVVIRGTVAYVPQISWI 714
L NI+ I G ++ I+G +G GK+ L+ + G + P + +I VA + ++
Sbjct: 16 LKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEP--TSGRIIY-HVALCEKCGYV 72
Query: 715 --------------------------------FNATLRKNILFGSEFDPAKYW-KTVDVS 741
R I+ F A Y TV +
Sbjct: 73 ERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTF--ALYGDDTVLDN 130
Query: 742 --------------ALQHDLDLLPDRDLTEIGERGVNI----SGGQKQRVSMARAVFNSC 783
A+ +DL+ ++ ++ R +I SGG+KQRV +AR +
Sbjct: 131 VLEALEEIGYEGKEAVGRAVDLI---EMVQLSHRITHIARDLSGGEKQRVVLARQLAKEP 187
Query: 784 I---KEELRG----KTRILVTNQL---------------HFLPHV-----DRIILVSEGM 816
+E G +T LV N L H+ P V D+ I + G
Sbjct: 188 FLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHW-PEVIEDLSDKAIWLENGE 246
Query: 817 IKEEGSFEELSKHGRLFQKLMENAGKMEEMEEREEKDDSINSNQEVSK 864
IKEEG+ +E+ ME ++E+ E E + I + VSK
Sbjct: 247 IKEEGTPDEVV------AVFMEGVSEVEKECEVEVGEPIIKV-RNVSK 287
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 38/143 (26%), Positives = 59/143 (41%), Gaps = 33/143 (23%)
Query: 655 PTLSNINLDIPVGSLVAIVGGTGEGKT-------SLVSAMLGE----------LPPLKDA 697
L+NI+ + G I G +G GK+ SL+S G L P
Sbjct: 21 KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEI-- 78
Query: 698 SVVIRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDL--LPDRDL 755
R V+Y Q +F T+ N++F + + D + DL+ LPD
Sbjct: 79 ---YRQQVSYCAQTPTLFGDTVYDNLIFPWQIRN----QQPDPAIFLDDLERFALPD--- 128
Query: 756 TEIGERGVN-ISGGQKQRVSMAR 777
I + + +SGG+KQR+S+ R
Sbjct: 129 -TILTKNIAELSGGEKQRISLIR 150
|
Length = 225 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 47/215 (21%), Positives = 90/215 (41%), Gaps = 47/215 (21%)
Query: 653 KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP------LKDASVV------ 700
K ++ ++L + G +V ++G G GKT+ ++G + P L +
Sbjct: 12 KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHK 71
Query: 701 -IRGTVAYVPQISWIF-NATLRKNILFGSEF--DPAKYWKTVDVSALQHDLDLLPDRDLT 756
R + Y+PQ + IF T+ +NIL E K + + L + + R
Sbjct: 72 RARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREE-KLEELLEEFHITHLRK-- 128
Query: 757 EIGERGVNISGGQKQRVSMARAVFNS----------------CIKE------ELRGK-TR 793
+ ++SGG+++RV +ARA+ + +++ L+ +
Sbjct: 129 ---SKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIG 185
Query: 794 ILVT--NQLHFLPHVDRIILVSEGMIKEEGSFEEL 826
+L+T N L DR ++ EG + EG+ EE+
Sbjct: 186 VLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEI 220
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 2e-04
Identities = 40/145 (27%), Positives = 68/145 (46%), Gaps = 26/145 (17%)
Query: 637 ELPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKD 696
E P ++ K G+FS + + I G ++ IVG G GKT+ + G L P +
Sbjct: 342 EYPDLTKKLGDFSLEVEGGE-------IYEGEVIGIVGPNGIGKTTFAKLLAGVLKP-DE 393
Query: 697 ASVVIRGTVAYVPQ-ISWIFNAT----LRKNILFGSEFDPAKYWKTVDVSALQHDLDLLP 751
V ++Y PQ I ++ T LR + + Y+K+ + LQ L+ L
Sbjct: 394 GEVDPELKISYKPQYIKPDYDGTVEDLLRSI---TDDLG-SSYYKSEIIKPLQ--LERLL 447
Query: 752 DRDLTEIGERGVNISGGQKQRVSMA 776
D+++ + +SGG+ QRV++A
Sbjct: 448 DKNVKD-------LSGGELQRVAIA 465
|
Length = 590 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 3e-04
Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 9/90 (10%)
Query: 1220 LPSEAPGMVESNRPPPAWPSSGSIKFEDVVLRYRPE---------LPPVLHGLSFTVSPS 1270
+P + + + ++ RY + +SF +
Sbjct: 258 VPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREG 317
Query: 1271 EKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
E +G+VG +G+GKS++ L ++ G
Sbjct: 318 ETLGLVGESGSGKSTLARILAGLLPPSSGS 347
|
Length = 539 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 3e-04
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 1258 PVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNAL 1290
+L +S T+ P E V I+G GAGKS++L AL
Sbjct: 16 TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRAL 48
|
Length = 258 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 3e-04
Identities = 44/146 (30%), Positives = 68/146 (46%), Gaps = 24/146 (16%)
Query: 648 FSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRG---- 703
+S+ L+NIN P S +A++G G GK++L G L P SV+IRG
Sbjct: 11 YSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKP-TSGSVLIRGEPIT 69
Query: 704 ---------TVAYVPQIS--WIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLD-LLP 751
V V Q IF+ T+ ++I FG P +D + H + L
Sbjct: 70 KENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFG----PINL--GLDEETVAHRVSSALH 123
Query: 752 DRDLTEIGERGV-NISGGQKQRVSMA 776
L E+ +R ++SGG+K+RV++A
Sbjct: 124 MLGLEELRDRVPHHLSGGEKKRVAIA 149
|
Length = 277 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 3e-04
Identities = 43/166 (25%), Positives = 76/166 (45%), Gaps = 39/166 (23%)
Query: 640 AVSIKNGNFSWDSKSP----TLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLK 695
++++N ++++ + +P L ++NL I GS A +G TG GK++++ + G P +
Sbjct: 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQ 61
Query: 696 DASVV----------------IRGTVAYVPQI--SWIFNATLRKNILFGSEFDPAKYWKT 737
+ V IR V V Q S +F T+ K++ FG P +
Sbjct: 62 GSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFG----PQNF--- 114
Query: 738 VDVSALQHDLDLLPDRDLTEIG------ERG-VNISGGQKQRVSMA 776
VS Q + + L L +G E+ +SGGQ +RV++A
Sbjct: 115 -GVS--QEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIA 157
|
Length = 280 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 3e-04
Identities = 40/168 (23%), Positives = 82/168 (48%), Gaps = 33/168 (19%)
Query: 638 LPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAM--LGELPPLK 695
+PA+ + N +F +D++ L ++++I + AI+G +G GK++ + + + EL
Sbjct: 5 IPAIKVNNLSFYYDTQK-ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNEL---- 59
Query: 696 DASVVIRGTVAYVPQISW---------------------IFNATLRKNILFGSE---FDP 731
++ V + G V + Q + +F ++ N+ +G + + P
Sbjct: 60 ESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRP 119
Query: 732 AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAV 779
+ SAL+ D DL D +I + +++SGGQ+QR+ +ARA+
Sbjct: 120 KLEIDDIVESALK-DADLW-DEIKHKIHKSALDLSGGQQQRLCIARAL 165
|
Length = 261 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 3e-04
Identities = 41/138 (29%), Positives = 62/138 (44%), Gaps = 24/138 (17%)
Query: 1163 AVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPS 1222
AVMQNGR Q L + T T L LN+ E G + LP
Sbjct: 228 AVMQNGRCVEQ---NRAATLFSAPTHPYTQKL-------------LNS-EPSGDPVPLPE 270
Query: 1223 EAPGMVESNRPPPAWPSSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAG 1282
A +++ + A+P I L+ + V+ +SFT+ P E +G+VG +G+G
Sbjct: 271 PASPLLDVEQLQVAFPIRKGI------LKRTVDHNVVVKNISFTLRPGETLGLVGESGSG 324
Query: 1283 KSSMLNALFRIVELERGE 1300
KS+ AL R++ +GE
Sbjct: 325 KSTTGLALLRLIN-SQGE 341
|
Length = 529 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 3e-04
Identities = 41/133 (30%), Positives = 60/133 (45%), Gaps = 24/133 (18%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLV-------SAMLGEL----PPLKDASVVIRGTV 705
L+ ++L IP G VA+VG +G GK++L+ + GEL PL +A R
Sbjct: 28 LNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMF 87
Query: 706 AYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNI 765
+ W + N+ G + W+ + AL L DR E +
Sbjct: 88 QDARLLPW---KKVIDNVGLGLKGQ----WRDAALQAL--AAVGLADR----ANEWPAAL 134
Query: 766 SGGQKQRVSMARA 778
SGGQKQRV++ARA
Sbjct: 135 SGGQKQRVALARA 147
|
Length = 257 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 3e-04
Identities = 40/166 (24%), Positives = 73/166 (43%), Gaps = 35/166 (21%)
Query: 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAM--LGELPPL---- 694
+ KN N W + L++INL I + A++G +G GK++ + + + +L
Sbjct: 5 MESKNLNL-WYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIE 63
Query: 695 ------------KDASVV-IRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVD-- 739
KD VV +R V V Q F ++ N+ +G K K +D
Sbjct: 64 GEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKI 123
Query: 740 ------VSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAV 779
+AL ++ +D ++ + + +SGGQ+QR+ +AR +
Sbjct: 124 VEWALKKAALWDEV-----KD--DLKKSALKLSGGQQQRLCIARTI 162
|
Length = 251 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 3e-04
Identities = 40/166 (24%), Positives = 69/166 (41%), Gaps = 29/166 (17%)
Query: 638 LPAVSIKN-GNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSL---VSAMLGELPP 693
P + I+N + + K + N+ + I + AI+G +G GKT+L ++ M +P
Sbjct: 1 EPIIEIENFSAYYGEKK--AVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPG 58
Query: 694 LK----------------DASVVIRGTVAYVPQISWIFNATLRKNILFGSEF----DPAK 733
+ R V V Q F ++ N+ FG K
Sbjct: 59 FRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHK 118
Query: 734 YWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAV 779
+ V+ S + L D +E+ + G +SGGQ+QR+ +ARA+
Sbjct: 119 LDRIVEESLKKA---ALWDEVKSELNKPGTRLSGGQQQRLCIARAL 161
|
Length = 250 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 3e-04
Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
Query: 1243 IKFEDVVLRYRPELPPV--LHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVE-LER 1298
I+ +++ + + L+ +S + E G++G +GAGKS+++ R + LER
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLI----RCINLLER 56
|
Length = 343 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 4e-04
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
++ + + Y L LS TV P E + ++G +G GK+++L + + + GE
Sbjct: 1 LELKGLSKTYGSV--RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGE 56
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 4e-04
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 1243 IKFEDVVLRY---RPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSML 1287
I+ E+V + L +S + E GI+G +GAGKS++L
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLL 49
|
Length = 339 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 4e-04
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 1258 PVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
+ G+SF + E +GIVG +G+GKS + A+ ++
Sbjct: 19 KAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNAR 61
|
Length = 316 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 4e-04
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 1243 IKFEDVVLRYR--PELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNAL 1290
+K E++ RY+ VL G+S ++ E V IVG +G+GKS++L+ L
Sbjct: 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLL 51
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 4e-04
Identities = 37/144 (25%), Positives = 63/144 (43%), Gaps = 30/144 (20%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGT------------ 704
L +N G ++A++G G GK++L+ + G L P A V+I G
Sbjct: 8 LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGA-VLIDGEPLDYSRKGLLER 66
Query: 705 ---VAYVPQ--ISWIFNATLRKNILFGSE---FDPAKYWKTVDVSALQHDLDLLPDRDLT 756
V V Q +F A + +++ FG A+ + V + L +
Sbjct: 67 RQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVR--------EALTAVGAS 118
Query: 757 EIGERGVN-ISGGQKQRVSMARAV 779
+ ER + +SGG+K+RV++A AV
Sbjct: 119 GLRERPTHCLSGGEKKRVAIAGAV 142
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 4e-04
Identities = 59/240 (24%), Positives = 99/240 (41%), Gaps = 60/240 (25%)
Query: 655 PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-------------I 701
L ++NL++ G + I+G G GK+++ M L P + V I
Sbjct: 24 LALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83
Query: 702 RGTVAYVPQ--ISWIFNATLRKNILFGSE---FDPAKYWKTVDVSALQHDLDLLPDRDLT 756
R V Q + I + +++ FG E P + + VD S L +
Sbjct: 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDES--------LKKVGMY 135
Query: 757 EIGERGVN-ISGGQKQRVSMA------------------------RAVFNSCIKE--ELR 789
E + +SGGQKQRV++A R V N+ IKE +
Sbjct: 136 EYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNT-IKELNKKY 194
Query: 790 GKTRILVTNQLHFLPHV---DRIILVSEGMIKEEGSFEELSKHGRLFQKLMENAGKMEEM 846
G T IL+T H++ DRII++ G + EG+ +E+ K + +K+ + ++ E+
Sbjct: 195 GITIILIT---HYMEEAVEADRIIVMDSGKVVMEGTPKEIFKEVEMMKKIGLDVPQVTEL 251
|
Length = 280 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 4e-04
Identities = 34/147 (23%), Positives = 64/147 (43%), Gaps = 26/147 (17%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGT------------ 704
+++++L++ G +V ++G G GKT+L + + G P +V+ RG
Sbjct: 20 VNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKP-SSGTVIFRGRDITGLPPHRIAR 78
Query: 705 --VAYVPQISWIF-NATLRKNIL--------FGSEFDPAKYWKTVDVSALQHDLDLLPDR 753
+A QI+ +F T+ +N+ + K A + +LL
Sbjct: 79 LGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEER-EARERARELLEFV 137
Query: 754 DLTE-IGERGVNISGGQKQRVSMARAV 779
L E N+S GQ++R+ +ARA+
Sbjct: 138 GLGELADRPAGNLSYGQQRRLEIARAL 164
|
Length = 250 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 4e-04
Identities = 42/151 (27%), Positives = 67/151 (44%), Gaps = 28/151 (18%)
Query: 649 SWDSKS-PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP----LKDASVVIRG 703
SW + + +++ P GSL ++G G GK++L+ + G L P + A V + G
Sbjct: 8 SWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHG 67
Query: 704 --------TVAYVPQ-ISWIFNATLRKNILFG-----SEF--DPAKYWKTVDVSALQHDL 747
VA V Q T+R + G S + D VD + + +L
Sbjct: 68 LSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTEL 127
Query: 748 DLLPDRDLTEIGERGVNISGGQKQRVSMARA 778
L DRD++ +SGG++QRV +ARA
Sbjct: 128 SHLADRDMS-------TLSGGERQRVHVARA 151
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 5e-04
Identities = 11/49 (22%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 1242 SIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNAL 1290
++ ++V + VL ++ + E V ++G +G GKS++L +
Sbjct: 3 ELELKNVRKSFGSF--EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMI 49
|
Length = 338 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 5e-04
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
I+ +++ + + VL G+S +V E V I+G +G+GKS++L L + E + G
Sbjct: 3 IEIKNLSKSFGDK--EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGS 58
|
Length = 240 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 5e-04
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP 693
A+ ++N +D+ P N+NL + G +AI+G G GKT+L+ ++GEL P
Sbjct: 319 ALEVENLTKGFDNG-PLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEP 371
|
Length = 530 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 5e-04
Identities = 26/129 (20%), Positives = 51/129 (39%), Gaps = 8/129 (6%)
Query: 655 PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLK-----DASVVIRGTVAYVP 709
++ + G + + G G GKT+L+ + G L P + + +
Sbjct: 14 MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHR 73
Query: 710 QISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVN-ISGG 768
I ++ + K L S + +W + A + D L LT + +S G
Sbjct: 74 NILYLGHLPGLKPEL--SALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAG 131
Query: 769 QKQRVSMAR 777
Q++R+++AR
Sbjct: 132 QQRRLALAR 140
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 6e-04
Identities = 37/154 (24%), Positives = 60/154 (38%), Gaps = 16/154 (10%)
Query: 1150 TLGGIMIWLIATFAVMQNG--RAENQVAFASTMGLLLSYTLNITNLLSGVLRQASR-AEN 1206
T+ + I +I T V G +AF + NLL G L Q S
Sbjct: 251 TISMMCILVIGTVLV-IKGELSVGEVIAF-----------IGFANLLIGRLDQMSGFITQ 298
Query: 1207 SLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSGSIKFEDVVLRYRPELPPVLHGLSFT 1266
A ++ + DL E P G+++F + + + +SF
Sbjct: 299 IFEARAKLEDFFDLEDSVFQREEPADAPELPNVKGAVEFRHITFEF-ANSSQGVFDVSFE 357
Query: 1267 VSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
+ V IVG TGAGK++++N L R+ + G+
Sbjct: 358 AKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQ 391
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 6e-04
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 1258 PVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNAL 1290
L ++ + E V IVG +G+GKS++LN L
Sbjct: 19 EALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLL 51
|
Length = 226 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 6e-04
Identities = 21/57 (36%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERG 1299
++F DV R+ VL GL+F+V+ EKV ++G +G+GKS++L L + ++ G
Sbjct: 1 VRFSDVTKRFGIL--TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEG 55
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 6e-04
Identities = 44/215 (20%), Positives = 78/215 (36%), Gaps = 49/215 (22%)
Query: 653 KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP------------LKDASVV 700
+ +N + G + +G G GKT+ + + L P +++ V
Sbjct: 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKV 64
Query: 701 IRGTVAYVPQISWIFNA-TLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIG 759
R ++ VPQ + + T R+N+ + + + +LL +L E
Sbjct: 65 -RRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAE-----ELLELFELGEAA 118
Query: 760 ERGV-NISGGQKQRVSMA-----------------------RAVFNSCIKEELRGKTRIL 795
+R V SGG ++R+ +A R I+ IL
Sbjct: 119 DRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTIL 178
Query: 796 VTNQLHFLPHV----DRIILVSEGMIKEEGSFEEL 826
+T H++ DRI ++ G I EG+ EEL
Sbjct: 179 LTT--HYMEEADKLCDRIAIIDHGRIIAEGTPEEL 211
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 6e-04
Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 22/149 (14%)
Query: 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV 700
VS++N + S+ + LS+++L++ G ++ ++G G GK++LV +LG + P D V+
Sbjct: 5 VSLENVSVSFGQRR-VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAP--DEGVI 61
Query: 701 IRGT---VAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTE 757
R + YVPQ ++ + TL P + + + D+LP +
Sbjct: 62 KRNGKLRIGYVPQKLYL-DTTL-----------PLTVNRFLRLRPGTKKEDILPALKRVQ 109
Query: 758 ----IGERGVNISGGQKQRVSMARAVFNS 782
I +SGG+ QRV +ARA+ N
Sbjct: 110 AGHLIDAPMQKLSGGETQRVLLARALLNR 138
|
Length = 251 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 7e-04
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
I+ + + VL G+ V E + I+G +G+GKS++L + ++ + GE
Sbjct: 1 IELRGLTKSFGGR--TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGE 56
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 7e-04
Identities = 65/323 (20%), Positives = 122/323 (37%), Gaps = 59/323 (18%)
Query: 992 RLHDSMLNSILRAPMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQ------ 1045
+L + IL P+ R++ + D+ RN+ SF + +L Q
Sbjct: 82 KLRSEFIKKILDTPLERIERLGSARLLAGLTSDV----RNI-SFAFSRLPELVQAIILTL 136
Query: 1046 -------LLST--FVLIGIVSTISLWAIMPLLILFYAAYLYYQSTAREVKRLDSITRSPV 1096
LS F+L + +++W L+ Y + + ARE T +
Sbjct: 137 GSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYK----HMAAARE-------TEDKL 185
Query: 1097 YAQFGEALNG-----LSTIRAFKAYDRMAKINGKSM-DNNIRFTLANTSSNRWLTIRLET 1150
+ L G L+ RA ++ + + + + IR + + W I L
Sbjct: 186 QNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLG 245
Query: 1151 LGGIMIWLIATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNA 1210
L G++ WL + G A V A+T+ L+L + G+L A+ + N
Sbjct: 246 LIGLVFWL-----ALSLGWASTNV--AATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNK 298
Query: 1211 VERVGTYIDLPSEAPGMVESNRPPPAWPSSGSIKFEDVVLRYRP---ELPPVLHGLSFTV 1267
+ ++ AP + RP P +++ +V Y+ + P+ + T+
Sbjct: 299 IAKL-------ELAPYKADFPRPQAF-PDWKTLELRNVRFAYQDNAFHVGPI----NLTI 346
Query: 1268 SPSEKVGIVGRTGAGKSSMLNAL 1290
E V ++G G+GKS++ L
Sbjct: 347 KRGELVFLIGGNGSGKSTLAMLL 369
|
Length = 546 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 7e-04
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 25/89 (28%)
Query: 763 VNISGGQKQRVSMARA--------VFN---SCIKEEL-------------RGKTRILVTN 798
++SGGQ+QRV++ARA +F+ S + EL G+T ++VT+
Sbjct: 151 AHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTH 210
Query: 799 QLHFLPHV-DRIILVSEGMIKEEGSFEEL 826
++ F V +I + +G I+EEG E++
Sbjct: 211 EMGFARDVSSHVIFLHQGKIEEEGPPEQV 239
|
Length = 256 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 7e-04
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
++ E+V R+ L +SF+V E G++G GAGK++ + + I+ + GE
Sbjct: 1 LEVENVTKRFGRV--TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGE 56
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 7e-04
Identities = 50/197 (25%), Positives = 85/197 (43%), Gaps = 45/197 (22%)
Query: 672 IVGGTGEGKTSLVSAMLGELPPLKDASVVIRGT-VAYVP----QISWIFNA-------TL 719
++G +G GKT+L+ +L S+++ G V VP I+ +F + T+
Sbjct: 1 LLGPSGCGKTTLLR-LLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTV 59
Query: 720 RKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERG-VNISGGQKQRVSMARA 778
+N+ F K K L+ L L E +R +SGGQ+QRV++ARA
Sbjct: 60 EENVAF-----GLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARA 114
Query: 779 VFN-----------SCIKEELR--------------GKTRILVT-NQLHFLPHVDRIILV 812
+ S + ++LR G T + VT +Q + DRI ++
Sbjct: 115 LVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIM 174
Query: 813 SEGMIKEEGSFEELSKH 829
+G I + G+ EE+ +
Sbjct: 175 RKGKIAQIGTPEEIYEE 191
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 8e-04
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 1259 VLHGLSFTVSPSEKVGIVGRTGAGKSSMLNAL 1290
+L G+S + P E + I+G GAGKS++L AL
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKAL 47
|
Length = 259 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 9e-04
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLN 1288
I + V+ Y P+LH LS+ V+P E IVG GAGKS++L+
Sbjct: 261 IVLNNGVVSYNDR--PILHNLSWQVNPGEHWQIVGPNGAGKSTLLS 304
|
Length = 490 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 0.001
Identities = 54/218 (24%), Positives = 91/218 (41%), Gaps = 49/218 (22%)
Query: 670 VAIVGGTGEGKTSL-------VSAMLGELPPLKDASVVIRGTVAY-----------VPQI 711
V IVG TG GK++L V GE+ V R AY +PQ
Sbjct: 1339 VGIVGRTGSGKSTLLLTFMRMVEVCGGEI------RVNGREIGAYGLRELRRQFSMIPQD 1392
Query: 712 SWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQ 771
+F+ T+R+N+ E A+ W +++ L+ + + + + E G N S GQ+Q
Sbjct: 1393 PVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQ 1452
Query: 772 RVSMARAVF------------------------NSCIKEELRGKTRILVTNQLHFLPHVD 807
+ MARA+ + + T I + ++LH + D
Sbjct: 1453 LMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYD 1512
Query: 808 RIILVSEGMIKEEGSFEELSKHGR-LFQKLMENAGKME 844
+II++ G + E GS EL + + +F ++E G+ E
Sbjct: 1513 KIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALGRSE 1550
|
Length = 1560 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 0.001
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 1230 SNRPPPAWPS-SGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLN 1288
S P P G + E+V + P L G+SF++ E + I+G +G+GKS++
Sbjct: 303 SRDPAMPLPEPEGHLSVENVTIVPPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLAR 362
Query: 1289 ALFRIVELERG 1299
+ I G
Sbjct: 363 LIVGIWPPTSG 373
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.001
Identities = 13/51 (25%), Positives = 25/51 (49%)
Query: 1250 LRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
+ Y +L+ +S +V E + I G +G GKS++L + ++ G
Sbjct: 9 VGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGT 59
|
Length = 223 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.001
Identities = 16/58 (27%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
I+FE+V RY ++ L+ ++ E + ++G +G+GK++ + + R++E GE
Sbjct: 1 IEFENVTKRY-GGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGE 57
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 0.001
Identities = 30/144 (20%), Positives = 62/144 (43%), Gaps = 27/144 (18%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP-------------LKDASVVIRG 703
+++L + G + A++G G GK++L+ + G P +K IR
Sbjct: 20 NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRL 79
Query: 704 TVAYVPQ-ISWIFNATLRKNILFGSE------FDPAKYWKTVDVSALQHDLDLLPDRDLT 756
+ V Q + T+ +NI+ G E D + + + ++ L + PD +
Sbjct: 80 GIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVA 139
Query: 757 EIGERGVNISGGQKQRVSMARAVF 780
+ +S G++QRV + +A++
Sbjct: 140 D-------LSVGEQQRVEILKALY 156
|
Length = 501 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 40/165 (24%), Positives = 72/165 (43%), Gaps = 38/165 (23%)
Query: 643 IKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSL--------------VSAML 688
++N + + + L NINL+I G VAI+G +G GK++L +
Sbjct: 4 VENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEG 63
Query: 689 GELPPLKDASV-VIRGTVAYVPQ-ISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHD 746
++ L+ + +R + + Q + I T+ +N+L G W+++
Sbjct: 64 TDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHG-RLGYKPTWRSL-------- 114
Query: 747 LDLLPDRD-------LTEIG------ERGVNISGGQKQRVSMARA 778
L + D L +G +R +SGGQ+QRV++ARA
Sbjct: 115 LGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARA 159
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.001
Identities = 37/144 (25%), Positives = 57/144 (39%), Gaps = 44/144 (30%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAY--------- 707
S ++ + G + + G G GKT+L+ + G LPP GT+
Sbjct: 18 FSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAA-------GTIKLDGGDIDDPD 70
Query: 708 -VPQISWI--FNA-----TLRKNILF------GSEFDPAKYWKTVDVSALQHDLDLLPDR 753
++ NA T+ +N+ F G E D A + V ++ L H LP
Sbjct: 71 VAEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAH----LPFG 126
Query: 754 DLTEIGERGVNISGGQKQRVSMAR 777
L S GQK+RV++AR
Sbjct: 127 YL----------SAGQKRRVALAR 140
|
Length = 207 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 0.001
Identities = 48/220 (21%), Positives = 86/220 (39%), Gaps = 58/220 (26%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLG-------------------ELPPLKDA 697
L +++L+I G L+A++G +G GKT+L+ A+ G PP K
Sbjct: 21 LDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRG 80
Query: 698 SVVIRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTE 757
++ A P + + N+ FG A+ D++ + D L L +
Sbjct: 81 LALLFQNYALFPHL------KVEDNVAFGLR---AQKMPKADIA--ERVADALKLVGLGD 129
Query: 758 IGER-GVNISGGQKQRVSMARAV---------------FNSCIK-----------EELRG 790
+SGG +QR+++ARA+ ++ I+ EEL
Sbjct: 130 AAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPE 189
Query: 791 KTRILVT-NQLHFLPHVDRIILVSEGMIKEEGSFEELSKH 829
T + VT +Q L D+ ++ +G + G + L
Sbjct: 190 LTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDA 229
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 0.001
Identities = 39/163 (23%), Positives = 75/163 (46%), Gaps = 29/163 (17%)
Query: 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAM--LGELPPL--KD 696
+ ++N N +D L N+NLDIP S+ A++G +G GK++ + + + +L P +
Sbjct: 4 IEVENLNTYFDDAH-ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHE 62
Query: 697 ASVVIRGTVAYVPQISWI---------------FNATLRKNILFG----SEFDPAKYWKT 737
+ + G Y P + + F ++ N+ +G E D +
Sbjct: 63 GHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEER 122
Query: 738 VDVSALQHDL-DLLPDRDLTEIGERGVNISGGQKQRVSMARAV 779
V+ S L D + D+ + + + +SGGQ+QR+ +AR +
Sbjct: 123 VEESLKAAALWDEVKDK----LDKSALGLSGGQQQRLCIARTI 161
|
Length = 250 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.001
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 1243 IKFEDVVLRYRPELPPV--LHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERG 1299
I + + R+R V + G+SFTV P E G++G GAGK++ L L ++E + G
Sbjct: 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAG 60
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.001
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 1258 PVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
+L G+ V E V IVG +G+GKS++L L + + GE
Sbjct: 24 SILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGE 66
|
Length = 228 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.001
Identities = 44/165 (26%), Positives = 79/165 (47%), Gaps = 27/165 (16%)
Query: 638 LPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAM--LGELP-PL 694
+PA+ +K+ +F +++ S + I++DI + AI+G +G GK++ + + + EL P+
Sbjct: 5 IPAIKVKDLSFYYNT-SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPV 63
Query: 695 KDASVV-IRGTVAYVP---------QISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQ 744
K VV G Y P QI +F R N S ++ Y + Q
Sbjct: 64 KVEGVVDFFGQNIYDPRININRLRRQIGMVFQ---RPNPFPMSIYENVAYGVRISAKLPQ 120
Query: 745 HDLDLLPDRDLT----------EIGERGVNISGGQKQRVSMARAV 779
DLD + + L ++ + + +SGGQ+QR+ +ARA+
Sbjct: 121 ADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARAL 165
|
Length = 259 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 1258 PVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
+ LSFT++ E + I G GAGK+++L L ++ + GE
Sbjct: 16 TLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGE 58
|
Length = 209 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.001
Identities = 40/167 (23%), Positives = 63/167 (37%), Gaps = 36/167 (21%)
Query: 655 PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISWI 714
L N+NL+I G +VA+VG +G GKT+L+ +LG RG Y P +
Sbjct: 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGA--------QKGRGEEKYRPDSGKV 448
Query: 715 FNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTE--IGERGVN-------- 764
+ L E++P T+ L+H D + + G++
Sbjct: 449 EVPKNTVSALIPGEYEPEFGEVTI----LEHLRSKTGDLNAAVEILNRAGLSDAVLYRRK 504
Query: 765 ---ISGGQKQRVSMARAVFNSCIKEELRGKTRILVTNQLHFLPHVDR 808
+S GQK+R +A+ R V F H+D
Sbjct: 505 FSELSTGQKERAKLAKL-----------LAERPNVLLIDEFAAHLDE 540
|
Length = 593 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.001
Identities = 40/157 (25%), Positives = 73/157 (46%), Gaps = 24/157 (15%)
Query: 641 VSIKNGNFSWDS--KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDAS 698
+ +KN F + + TL++++ + G ++I+G G GK++ V + G L +
Sbjct: 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEA-ESGQ 63
Query: 699 VVIRG---TVAYV----PQISWIFN--------ATLRKNILFGSEFDPAKYWKTVDVSAL 743
++I G T V +I +F AT+ ++ FG E + + +
Sbjct: 64 IIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMK--ERV 121
Query: 744 QHDLDLLPDRDLTEIGERG-VNISGGQKQRVSMARAV 779
L+L+ + + ER +SGGQKQRV++A AV
Sbjct: 122 NEALELV---GMQDFKEREPARLSGGQKQRVAIAGAV 155
|
Length = 279 |
| >gnl|CDD|206743 cd11383, YfjP, YfjP GTPase | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.001
Identities = 13/19 (68%), Positives = 17/19 (89%)
Query: 1274 GIVGRTGAGKSSMLNALFR 1292
G++G+TGAGKSS+ NALF
Sbjct: 1 GLMGKTGAGKSSLCNALFG 19
|
The Era (E. coli Ras-like protein)-like YfjP subfamily includes several uncharacterized bacterial GTPases that are similar to Era. They generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. Length = 140 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 0.001
Identities = 39/156 (25%), Positives = 77/156 (49%), Gaps = 21/156 (13%)
Query: 638 LPAVSIKNGNFSWD-SKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKD 696
+P V +KN ++ S P + +N+ + A +G G GKT+ +S + G LPP
Sbjct: 926 VPGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSG 985
Query: 697 ASVV-----------IRGTVAYVPQISWIF-NATLRKNILFGSEFDPAKYWK--TVDVSA 742
+V +R ++ PQ + +F + T+ ++ILF ++ + W+ +++ A
Sbjct: 986 TVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLK-GRSWEEAQLEMEA 1044
Query: 743 LQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARA 778
+ D L R+ E ++SGG ++++S+A A
Sbjct: 1045 MLEDTGLHHKRN-----EEAQDLSGGMQRKLSVAIA 1075
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.002
Identities = 38/174 (21%), Positives = 72/174 (41%), Gaps = 44/174 (25%)
Query: 642 SIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI 701
+++N + ++ + P L N++L + G + +VG G GK++L+ + GEL P D+ V
Sbjct: 5 TLENLSLAYGDR-PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEP--DSGEVT 61
Query: 702 RG---TVAYVPQISWIF-NATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTE 757
R V Y+ Q + T+ ++ + + + + L+ LL D D
Sbjct: 62 RPKGLRVGYLSQEPPLDPEKTVLDYVI-----EGFGELRELL-AELEEAYALLADPDDEL 115
Query: 758 IGE---------------------RGVNI----------SGGQKQRVSMARAVF 780
+ E G+ SGG ++RV++ARA+
Sbjct: 116 LAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALL 169
|
Length = 530 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.002
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
I+ D+ + Y + L +S + E ++G +G GKS++L L R+ +L G
Sbjct: 1 IELRDLNVYYGDK--HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA 56
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.002
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNAL 1290
I+ E++ L P+ +L LSF + P +++ I G +G GKSS+ AL
Sbjct: 1 IELENLSL-ATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRAL 47
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 0.002
Identities = 41/153 (26%), Positives = 71/153 (46%), Gaps = 27/153 (17%)
Query: 647 NFSWDSKSP----TLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-- 700
N+++ SP L +I+L++ GS A++G TG GK++L+ + G L P + V
Sbjct: 8 NYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGD 67
Query: 701 --------------IRGTVAYVPQI--SWIFNATLRKNILFGSEFDPAKYWKTVDVSALQ 744
+R V V Q S +F T+ K++ FG + K ++A +
Sbjct: 68 IVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEK 127
Query: 745 HDLDLLPDRDLTEIGERG-VNISGGQKQRVSMA 776
++ L E E+ +SGGQ +RV++A
Sbjct: 128 LEMVGLA----DEFWEKSPFELSGGQMRRVAIA 156
|
Length = 288 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.002
Identities = 40/161 (24%), Positives = 74/161 (45%), Gaps = 29/161 (18%)
Query: 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAM------------L 688
+S KN N + K L +I + IP + A++G +G GK++L+
Sbjct: 7 LSTKNLNLWYGEKH-ALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRIT 65
Query: 689 GEL----PPLKDAS---VVIRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDV- 740
G++ + D+ V +R + V Q F ++ +N+ +G K KT+D
Sbjct: 66 GDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTI 125
Query: 741 --SALQHDL--DLLPDRDLTEIGERGVNISGGQKQRVSMAR 777
+L+ D + DR + + +++SGGQ+QR+ +AR
Sbjct: 126 VEKSLKGAALWDEVKDR----LHDSALSLSGGQQQRLCIAR 162
|
Length = 253 |
| >gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.002
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 1272 KVGIVGRTGAGKSSMLNALFR 1292
+V +VGR GKS+++NAL
Sbjct: 1 RVALVGRPNVGKSTLINALTG 21
|
The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.002
Identities = 42/146 (28%), Positives = 73/146 (50%), Gaps = 33/146 (22%)
Query: 653 KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLG-ELPPLKDASVVIRG---TVAYV 708
+ + N+NL I G++V ++G +G GKT+++ + G E P + + I G T +
Sbjct: 18 SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKP--TEGQIFIDGEDVTHRSI 75
Query: 709 PQ--ISWIFNA-------TLRKNILFGSEFDPAKYWKTVDVSA------LQHDLDLLPDR 753
Q I +F + +L +N+ +G K + V ++ L+L+
Sbjct: 76 QQRDICMVFQSYALFPHMSLGENVGYG--------LKMLGVPKEERKQRVKEALELV--- 124
Query: 754 DLTEIGERGVN-ISGGQKQRVSMARA 778
DL +R V+ ISGGQ+QRV++ARA
Sbjct: 125 DLAGFEDRYVDQISGGQQQRVALARA 150
|
Length = 351 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 38/155 (24%)
Query: 652 SKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAM--LGELPPLKDASVVIRGTVAY-- 707
+K L++++LD + A++G +G GK++L+ ++ + +L P V I G++ Y
Sbjct: 16 NKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNP----EVTITGSIVYNG 71
Query: 708 -------------------VPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDL- 747
V Q F ++ +N+++G K + +D A++ L
Sbjct: 72 HNIYSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLD-EAVEKSLK 130
Query: 748 -----DLLPDRDLTEIGERGVNISGGQKQRVSMAR 777
D + DR + + + +SGGQ+QRV +AR
Sbjct: 131 GASIWDEVKDR----LHDSALGLSGGQQQRVCIAR 161
|
Length = 252 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.002
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 1258 PVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
P+L + +E+V +VGR GAGKS+++ L V L+ G
Sbjct: 17 PLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGR 59
|
Length = 635 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.002
Identities = 42/212 (19%), Positives = 80/212 (37%), Gaps = 54/212 (25%)
Query: 659 NINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-----------IRGTVAY 707
++ + G + ++G G GKT+ + + L P + V +R +
Sbjct: 18 GVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGI 77
Query: 708 VPQISWIFNA-TLRKNI-LFGSEFD-PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGV- 763
V Q + + T +N+ + + P + + +LL L E +R V
Sbjct: 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERR-------ERIDELLDFVGLLEAADRLVK 130
Query: 764 NISGGQKQRVSMARAVFNS-----------------------CIKEELR--GKTRILVTN 798
SGG ++R+ +AR++ + I++ G T +L T
Sbjct: 131 TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTT- 189
Query: 799 QLHFLPHV----DRIILVSEGMIKEEGSFEEL 826
H++ DR+ ++ G I EG+ EEL
Sbjct: 190 --HYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.002
Identities = 41/161 (25%), Positives = 73/161 (45%), Gaps = 29/161 (18%)
Query: 640 AVSIKNGNFSWDSKSPT----LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLK 695
++ +N ++ + +P L NI+ ++ GS VA+VG TG GK++L+ L P
Sbjct: 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSS 61
Query: 696 DASVV----------------IRGTVAYVPQI--SWIFNATLRKNILFGSEFDPAKYWKT 737
+ +R V+ V Q + +F T+ K++ FG P + +
Sbjct: 62 GTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFG----PKNFGFS 117
Query: 738 VDVSALQHDLDLLPDRDLTE--IGERGVNISGGQKQRVSMA 776
+ A + L L L+E I + +SGGQ +RV++A
Sbjct: 118 -EDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIA 157
|
Length = 287 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.003
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 6/54 (11%)
Query: 1243 IKFEDVVLRYRPELP---PVLHGLSFTVSPSEKVGIVGRTGAGKSSM---LNAL 1290
IK +++V + +LP L +S ++ E + I+G+TG+GK++ LNAL
Sbjct: 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNAL 56
|
Length = 305 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 0.003
Identities = 23/45 (51%), Positives = 30/45 (66%), Gaps = 3/45 (6%)
Query: 738 VDVS--ALQHD-LDLLPDRDLTEIGERGVNISGGQKQRVSMARAV 779
VDVS L HD + LPD+ T +G +SGGQKQR+S+ARA+
Sbjct: 550 VDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAI 594
|
Length = 1466 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 49/220 (22%), Positives = 80/220 (36%), Gaps = 70/220 (31%)
Query: 655 PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLG-ELP----------PL----KDASV 699
L + L + G VAIVG +G GK++L++ + G + P PL +DA
Sbjct: 24 SILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARA 83
Query: 700 VIRG-TVAYV-------PQISWIFNATLR---KNILFGSEFDPAKYWKTVDVSALQHDLD 748
+R V +V P ++ + N L + AK ++ L L
Sbjct: 84 ALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKAL--LEAVGLGKRLT 141
Query: 749 LLPDRDLTEIGERGVNISGGQKQRVSMARA----------------------------VF 780
P + +SGG++QRV++ARA +F
Sbjct: 142 HYPAQ-----------LSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLF 190
Query: 781 NSCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEE 820
RG T +LVT+ DR + + G + E+
Sbjct: 191 A---LNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVED 227
|
Length = 228 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.003
Identities = 36/172 (20%), Positives = 76/172 (44%), Gaps = 29/172 (16%)
Query: 631 NPPLEPELPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGE 690
+P + ++ N + + L ++++DIP + A++G +G GK++ + +
Sbjct: 30 DPAASSGETVIEARDLNVFYGDEQ-ALDDVSMDIPENQVTAMIGPSGCGKSTFLRC-INR 87
Query: 691 LPPLKDAS--------------------VVIRGTVAYVPQISWIFNATLRKNILFGSEFD 730
+ L DA+ V +R + V Q F ++ N+ +G +
Sbjct: 88 MNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQ 147
Query: 731 --PAKYWKTVDVSALQHDL-DLLPDRDLTEIGERGVNISGGQKQRVSMARAV 779
+ V+ S + L D + D+ + G+++SGGQ+QR+ +ARA+
Sbjct: 148 GYDGDIDERVEESLRRAALWDEVKDQ----LDSSGLDLSGGQQQRLCIARAI 195
|
Length = 285 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.003
Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 20/155 (12%)
Query: 645 NGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSA---MLGELPPLKDAS--- 698
NG W + L NINL IP + AI+G +G GK++ + M+ +P +K
Sbjct: 16 NGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMN 75
Query: 699 -------------VVIRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQH 745
V +R + V Q F ++ N+ +G K K + +
Sbjct: 76 YNGSNILKGKVDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKS 135
Query: 746 DLDL-LPDRDLTEIGERGVNISGGQKQRVSMARAV 779
D+ L D + + +++SGGQ+QR+ +ARA+
Sbjct: 136 LKDVALWDEVKDRLHTQALSLSGGQQQRLCIARAL 170
|
Length = 259 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.003
Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 30/165 (18%)
Query: 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLK--- 695
P + ++N N W + L N+++ IP S+ A++G +G GK++ + L + L
Sbjct: 11 PQIKVENLNL-WYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRC-LNRMNDLIKNC 68
Query: 696 --DASVVIRGTVAYVPQISWIFNATLRKNI--LFG-------SEFDPAKYWKTVDVSALQ 744
+ V I G Y P + + LRKN+ +F S +D Y + A +
Sbjct: 69 RIEGKVSIEGEDIYEPDVDVV---ELRKNVGMVFQKPNPFPMSIYDNVAYGPRIH-GANK 124
Query: 745 HDLDLLPDRDL------TEIGER----GVNISGGQKQRVSMARAV 779
DLD + + L E +R +++SGGQ+QR+ +AR +
Sbjct: 125 KDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTL 169
|
Length = 258 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.003
Identities = 40/142 (28%), Positives = 63/142 (44%), Gaps = 19/142 (13%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISWIFN 716
L N++ I G ++AIVG +G GK++L+ +LG L V+ G + ++S
Sbjct: 25 LHNVSFSIGEGEMMAIVGSSGSGKSTLLH-LLGGLDTPTSGDVIFNGQP--MSKLSSAAK 81
Query: 717 ATLRKNIL-FGSEFD--------------PAKYWKTVDVSALQHDLDLLPDRDLTEIGE- 760
A LR L F +F P K L++L L
Sbjct: 82 AELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANH 141
Query: 761 RGVNISGGQKQRVSMARAVFNS 782
R +SGG++QRV++ARA+ N+
Sbjct: 142 RPSELSGGERQRVAIARALVNN 163
|
Length = 233 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.003
Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 20/136 (14%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQ------ 710
L +NL I G ++++G +G GK++L++ + G P V++ G P
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQP-TSGGVILEGKQITEPGPDRMVV 59
Query: 711 ------ISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGE-RGV 763
+ W+ T+R+NI + K+ + ++ + L+ LTE + R
Sbjct: 60 FQNYSLLPWL---TVRENIALAVDRVLPDLSKSERRAIVEEHIALV---GLTEAADKRPG 113
Query: 764 NISGGQKQRVSMARAV 779
+SGG KQRV++ARA+
Sbjct: 114 QLSGGMKQRVAIARAL 129
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.003
Identities = 39/152 (25%), Positives = 70/152 (46%), Gaps = 33/152 (21%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAM----LGELPPLKDASVV------------ 700
L ++L+I G +VA++G +G GK++L+ + G+ ++
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLAR 79
Query: 701 -IRGTVAYVPQISWIFNA----TLRKNILFGSEFDPAKYWKTVD--VSALQHDLDLLPDR 753
IR + A I FN ++ +N+L G+ +W+T + Q L +
Sbjct: 80 DIRKSRANTGYIFQQFNLVNRLSVLENVLIGA-LGSTPFWRTCFSWFTREQKQRAL---Q 135
Query: 754 DLTEIG------ERGVNISGGQKQRVSMARAV 779
LT +G +R +SGGQ+QRV++ARA+
Sbjct: 136 ALTRVGMVHFAHQRVSTLSGGQQQRVAIARAL 167
|
Length = 262 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.004
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNAL 1290
++ ++ Y+ P + LS V E G++G GAGK++ L L
Sbjct: 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKML 48
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.004
Identities = 40/151 (26%), Positives = 74/151 (49%), Gaps = 35/151 (23%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAM--LGELPPLK--DASVVIRGTVAYVPQIS 712
+ N+NLD+ G++ A++G +G GKT+ + A+ + +L P +++ G Y P++
Sbjct: 20 VKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVD 79
Query: 713 WIFNATLRKNILFGSEFDPAKYWKTVD-----VSALQHDLDLLPDRD-LTEIGERGV--- 763
+ +R+ + G F + T+ V+ L+ L + DRD L E+ ER +
Sbjct: 80 PV---AMRRRV--GMVFQKPNPFPTMSVFDNVVAGLK--LAGIRDRDHLMEVAERSLRGA 132
Query: 764 ---------------NISGGQKQRVSMARAV 779
+SGGQ+QR+ +ARA+
Sbjct: 133 ALWDEVKDRLKTPATGLSGGQQQRLCIARAL 163
|
Length = 252 |
| >gnl|CDD|226124 COG3596, COG3596, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.004
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 1263 LSFTVSPSEKVGIVGRTGAGKSSMLNALF 1291
L T V ++G TGAGKSS++NALF
Sbjct: 32 LQLTEKEPVNVLLMGATGAGKSSLINALF 60
|
Length = 296 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.004
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 653 KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP 693
K L +I+L + G + +G G GKT+ + +LG + P
Sbjct: 12 KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKP 52
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1303 | |||
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 99.97 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 99.97 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 99.97 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 99.97 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 99.97 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 99.97 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 99.97 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.97 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 99.97 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 99.97 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 99.97 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 99.97 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 99.97 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 99.97 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 99.97 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 99.97 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 99.97 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 99.97 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 99.97 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 99.97 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 99.97 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 99.97 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 99.97 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 99.97 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 99.97 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 99.97 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 99.97 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 99.97 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 99.97 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 99.96 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 99.96 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 99.96 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 99.96 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 99.96 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 99.96 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 99.96 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 99.96 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.96 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.96 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 99.96 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 99.96 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 99.96 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.96 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 99.96 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 99.96 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 99.96 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 99.96 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 99.96 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 99.96 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 99.95 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.95 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 99.95 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.95 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 99.95 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.95 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.95 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.95 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.95 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 99.95 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 99.95 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 99.95 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 99.95 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.95 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.95 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.95 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 99.95 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 99.95 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 99.95 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.95 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 99.95 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 99.95 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 99.95 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 99.95 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.95 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 99.95 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 99.95 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.95 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 99.95 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 99.95 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 99.95 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 99.95 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 99.95 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 99.95 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 99.95 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 99.95 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 99.95 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 99.95 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.95 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 99.95 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 99.95 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 99.95 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 99.95 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 99.95 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.95 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.95 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 99.95 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 99.95 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 99.95 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 99.95 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.95 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 99.94 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 99.94 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 99.94 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 99.94 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 99.94 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 99.94 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.94 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 99.94 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 99.94 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.94 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 99.94 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.94 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 99.94 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 99.94 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.94 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.94 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 99.94 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 99.94 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 99.94 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.94 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 99.94 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.94 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.94 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.94 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 99.94 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 99.94 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 99.94 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 99.94 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 99.94 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 99.94 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 99.94 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 99.94 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 99.94 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 99.94 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.94 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.94 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 99.94 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 99.94 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 99.94 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 99.94 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 99.94 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 99.94 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.94 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 99.94 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 99.94 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 99.94 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 99.94 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 99.94 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 99.94 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 99.94 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 99.94 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 99.94 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 99.94 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 99.94 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 99.94 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 99.94 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 99.94 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 99.94 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 99.94 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 99.94 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 99.94 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 99.94 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 99.94 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 99.94 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 99.94 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 99.94 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.94 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 99.94 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 99.94 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 99.94 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 99.94 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 99.94 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 99.94 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.94 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 99.94 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 99.94 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 99.94 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.94 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 99.94 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 99.94 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 99.94 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 99.94 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 99.93 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 99.93 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 99.93 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 99.93 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 99.93 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 99.93 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 99.93 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 99.93 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 99.93 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 99.93 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 99.93 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 99.93 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.93 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 99.93 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.93 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 99.93 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 99.93 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 99.93 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 99.93 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 99.93 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 99.93 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 99.93 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 99.93 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 99.93 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 99.93 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 99.93 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 99.93 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 99.93 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 99.93 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 99.93 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 99.93 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 99.93 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 99.93 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 99.92 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 99.92 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 99.92 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 99.92 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 99.92 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 99.92 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.92 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 99.92 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 99.92 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 99.92 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 99.92 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 99.92 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 99.92 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 99.92 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 99.92 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 99.92 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 99.91 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 99.91 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 99.91 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 99.91 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 99.91 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 99.91 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 99.91 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 99.91 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 99.91 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 99.91 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 99.91 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 99.91 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 99.91 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 99.91 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 99.91 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 99.91 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 99.91 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 99.91 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 99.91 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 99.9 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 99.9 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 99.9 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 99.9 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 99.9 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 99.9 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 99.9 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 99.9 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 99.9 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 99.9 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 99.9 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 99.9 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 99.9 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 99.9 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 99.89 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 99.89 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 99.89 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 99.89 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 99.89 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 99.89 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 99.89 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 99.89 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 99.89 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 99.89 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 99.89 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 99.89 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 99.89 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 99.89 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 99.88 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 99.88 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.88 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 99.88 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 99.88 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 99.88 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.87 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 99.87 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 99.87 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.87 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 99.87 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.87 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 99.87 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.87 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 99.87 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.87 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 99.87 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 99.87 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 99.86 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 99.86 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 99.86 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 99.85 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 99.85 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 99.85 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 99.84 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 99.84 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.84 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 99.84 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.83 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 99.83 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 99.81 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 99.81 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 99.81 | |
| PF00664 | 275 | ABC_membrane: ABC transporter transmembrane region | 99.8 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.8 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.8 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 99.8 | |
| PF00664 | 275 | ABC_membrane: ABC transporter transmembrane region | 99.79 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.79 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 99.78 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 99.77 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 99.75 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 99.74 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.74 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.73 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.72 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.72 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 99.71 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.67 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.62 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.61 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 99.6 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.58 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.57 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 99.56 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.56 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.52 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.51 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.51 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 99.51 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.5 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.47 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.46 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.46 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.45 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.44 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.44 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.43 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 99.43 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.43 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 99.42 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.41 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 99.4 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.39 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 99.38 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 99.35 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 99.35 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.35 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 99.33 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 99.33 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 99.32 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 99.31 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.31 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.29 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.28 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 99.27 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 99.27 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 99.26 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 99.26 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.26 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 99.26 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 99.25 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 99.25 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 99.25 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 99.24 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 99.24 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 99.23 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 99.23 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.22 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 99.22 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 99.22 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 99.21 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.21 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 99.21 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 99.21 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 99.21 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 99.2 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 99.2 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 99.2 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 99.2 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 99.2 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.19 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.19 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 99.19 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 99.19 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 99.19 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.19 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 99.19 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 99.18 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 99.18 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 99.18 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 99.18 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 99.18 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.18 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.18 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 99.18 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.18 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 99.18 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 99.18 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.18 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 99.18 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 99.18 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 99.18 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 99.18 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 99.18 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 99.17 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 99.17 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 99.17 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.17 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 99.17 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 99.17 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 99.17 |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-184 Score=1741.36 Aligned_cols=1040 Identities=48% Similarity=0.795 Sum_probs=940.7
Q ss_pred CCCCccCCh--hhHHHHHchHHHHHhhhcCCCCCCCCCCCCccCcHHHHHHHHHHHHHHhhccC--CchHHHHHHHHHhH
Q 000746 252 VCPERNASI--LSRTSFGWMTPLLQLGYKKPITEKDVWKLDTWDQTEILIEKFHRCWIEESQRS--KPWLLRALNNSFGG 327 (1303)
Q Consensus 252 ~~pe~~a~~--~s~~~f~Wl~~l~~~g~~~~L~~~dl~~l~~~~~s~~l~~~~~~~w~~~~~~~--~~~l~~~l~~~~~~ 327 (1303)
++|.+.++. +|+++|||++|++++|||++|+.+|+|+++++|+++.+.++|++.|+++.+++ +|+++++++++|++
T Consensus 122 ~~~~~~~~~~~~S~~~f~W~~~l~~~g~k~~L~~~Dl~~l~~~d~s~~l~~~~~~~w~~~~~~~~~~psl~~al~~~f~~ 201 (1381)
T KOG0054|consen 122 PNPLPEASAGFLSRLTFSWMTPLLRKGYKKPLELKDLWSLSPEDSSETLVKRLESLWEKELGRSGKKPSLLRALLRTFGR 201 (1381)
T ss_pred CCcccccchhHHHHHHHHHHHHHHHhhccCCCChhhcccCChhhhhhHHHHHHHHHHHHHhccccCCcHHHHHHHHHHHH
Confidence 445555555 99999999999999999999999999999999999999999999999986544 78999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 328 RFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRG-DPAWIGYIYAFLIFVGVSFGVLTEAQYFQNVWRVGFRLRSTLVAAI 406 (1303)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~L~~~i 406 (1303)
.++..+++.++.+...+++|.+++.++++++++ .+.+.||.++++++++.++.+++.++|++..++.++|+|.++..+|
T Consensus 202 ~~~~~~~~~~~~~~~~~~~P~lL~~li~~~~~~~~~~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~~~I 281 (1381)
T KOG0054|consen 202 TFLLSGIFLFLRDLAGFVGPLLLKKLILFFSEKRLPLNNGYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALISAI 281 (1381)
T ss_pred HHHHHHHHHHHHHHHccccHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHH
Confidence 999999999999999999999999999999876 4557789999999999999999999999999999999999999999
Q ss_pred HHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 407 FRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQLHGLWSAPFRITLSMVLLYQQLGVASLLGSLMLVLMVPLQTFI 486 (1303)
Q Consensus 407 ~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~~~~~~~~~~i~~~~~~l~~~lg~~~l~~~~~~~~~~~~~~~~ 486 (1303)
|+|.|+++...+.+.+.|+++|+|++|+++++++..++|.+|.+|+|++++++++|..+|+++++|++++++++|++.++
T Consensus 282 Y~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~~h~~w~~Plqi~~~l~lLy~~LG~sa~~G~~~~il~~p~n~~~ 361 (1381)
T KOG0054|consen 282 YRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACFLHLLWSAPLQIILALYLLYGLLGPSALAGVAVMVLLIPLNSFL 361 (1381)
T ss_pred HHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHh
Q 000746 487 ISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSIPVVVTVV 566 (1303)
Q Consensus 487 ~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (1303)
+++++++|++.|+.+|+|++.++|+|+|||+||+|+||+.|.+++++.|++|++..++..+..++..+.+...|.+++++
T Consensus 362 a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~lv~~~ 441 (1381)
T KOG0054|consen 362 AKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSPVLVSVV 441 (1381)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhh-hhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC--CCCCCCCcEEE
Q 000746 567 SFGTFT-LLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILMPNP--PLEPELPAVSI 643 (1303)
Q Consensus 567 ~f~~~~-~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~--~~~~~~~~i~~ 643 (1303)
+|++|+ ..++.+++..+|+++++|+.++.|+..+|..+..+.++.+|++|+++|+..+|....... +..+....+++
T Consensus 442 tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~~~~~~~~~~i~i 521 (1381)
T KOG0054|consen 442 TFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVERSPDEAGENAIEI 521 (1381)
T ss_pred HHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccccccCCCCCCCceEEE
Confidence 999999 667889999999999999999999999999999999999999999999998875433222 33345567999
Q ss_pred EeeEEEeCCC--CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcCeEEEEccCcccccccHHH
Q 000746 644 KNGNFSWDSK--SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISWIFNATLRK 721 (1303)
Q Consensus 644 ~~~~f~~~~~--~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~~iayv~Q~p~l~~~Tire 721 (1303)
+|++|+|+++ .+.|+||||+|++|+++||||++||||||||++|+||+++.+| .+.+++.+|||||+||||||||||
T Consensus 522 ~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG-~v~v~gsiaYv~Q~pWI~ngTvre 600 (1381)
T KOG0054|consen 522 KNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSG-SVAVNGSVAYVPQQPWIQNGTVRE 600 (1381)
T ss_pred eeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccc-eEEEcCeEEEeccccHhhCCcHHH
Confidence 9999999863 3699999999999999999999999999999999999999997 788999999999999999999999
Q ss_pred HHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHH-----------------------
Q 000746 722 NILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARA----------------------- 778 (1303)
Q Consensus 722 NI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARA----------------------- 778 (1303)
||+||+|||+++|++|+++|+|++|++.||+||+|+|||+|.||||||||||+||||
T Consensus 601 NILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~ 680 (1381)
T KOG0054|consen 601 NILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGK 680 (1381)
T ss_pred hhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhH
Confidence 999999999999999999999999999999999999999999999999999999999
Q ss_pred -HHHHHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhcchHHHHHHHHhccchhhhhhhhcccccc
Q 000746 779 -VFNSCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLMENAGKMEEMEEREEKDDSIN 857 (1303)
Q Consensus 779 -l~~~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 857 (1303)
+|++|+++.+++||+|+|||++++++.||+|++|+||+|.++|+|+|+++.++.+.++..+.....+.+ .+.+ ..+
T Consensus 681 ~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~~~~~~~~l~~~~~~~~~~~-~~~~--~~~ 757 (1381)
T KOG0054|consen 681 HIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKSGGDFAELAHEEESEQEEE-ASEK--DLE 757 (1381)
T ss_pred HHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHhcchhHHHHhhccchhhccc-cccc--ccc
Confidence 567899899999999999999999999999999999999999999999999999888843322111110 0000 000
Q ss_pred cccccCcccccccccccCCCCCccccccccCCCcccchhhhhhcCccchhHHHHHHHHcCchHHHHHHHHHHHHHHHHHh
Q 000746 858 SNQEVSKPVANRAVQVNEFPKNESYTKKGKRGRSVLVKQEERETGIVSGSVLTRYKNALGGPWVIMILFACYLSTEVLRI 937 (1303)
Q Consensus 858 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vy~~y~~~~g~~~~~~~~~~~~~~~~~~~~ 937 (1303)
.. ........+.....+ ...+..+..++...++.++|+++.|.|+|++|+.|+++.++++.+.+.+++.+..+++.+
T Consensus 758 ~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ee~~~G~v~~~vY~~Y~~a~~g~~~~~~~~~~~v~~~~~~~ 834 (1381)
T KOG0054|consen 758 SG-ESSRESESRSLESLS--SEEEKSKDEKEEEDKLVQEEERETGKVSWSVYKKYIKAAGGFLLVLLILLLFVLTQVLQI 834 (1381)
T ss_pred cc-ccccchhhhhhhhhc--ccccccccccchhhHHHHHHHHhcCEeeHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 00 000000000000000 000000111111234566788899999999999999997777777777778888899999
Q ss_pred hhhHHHhhhcccccCCC---CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCc
Q 000746 938 SSSTWLSFWTDQSTSKN---YNPGFYIAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILRAPMLFFHTNPI 1014 (1303)
Q Consensus 938 ~~~~~l~~w~~~~~~~~---~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~ 1014 (1303)
+.++|+++|+++..... .+..+|+++|.+++++..++.+++++++..++.+++++||++|+++++|+||+|||+||+
T Consensus 835 ~~~~WLs~W~~~~~~~~~~~~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~ 914 (1381)
T KOG0054|consen 835 ASNYWLSYWTDDGEDNGTTTVSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDTTPT 914 (1381)
T ss_pred HHHHHHHHhcCCcccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCCCCc
Confidence 99999999998764333 467889999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 000746 1015 GRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLILFYAAYLYYQSTAREVKRLDSITRS 1094 (1303)
Q Consensus 1015 G~ilnR~s~D~~~vd~~l~~~~~~~~~~~~~~i~~~v~i~~~~~~~~~~~~pl~~~~~~i~~~~~~~~r~l~r~~~~~~s 1094 (1303)
|||+||||+|++.+|..+|..+..++..++.++++++++++++|+++++++|+.++++++++||.+++|+++|+++.++|
T Consensus 915 GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRS 994 (1381)
T KOG0054|consen 915 GRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRS 994 (1381)
T ss_pred cchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcChhhHhhcCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcccccc
Q 000746 1095 PVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGIMIWLIATFAVMQNGRAENQV 1174 (1303)
Q Consensus 1095 ~l~s~~~E~l~Gi~tIrAf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~ 1174 (1303)
|+++||+|+++|+.|||||++|++|.+++.+++|.+.++.+....++||+++|+|++++++++.++.+++......
T Consensus 995 Pi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~~~~~---- 1070 (1381)
T KOG0054|consen 995 PIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVLLPSGL---- 1070 (1381)
T ss_pred hHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC----
Confidence 9999999999999999999999999999999999999999999999999999999999999999988888765421
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCC
Q 000746 1175 AFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSGSIKFEDVVLRYRP 1254 (1303)
Q Consensus 1175 ~~~~~~gl~l~~~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~ 1254 (1303)
..+|.+|++++|++++++.+++++|+.+++|+.|+|+|||.||.++|+|.|...+...||+.||.+|+|+|+|+++||+|
T Consensus 1071 ~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp 1150 (1381)
T KOG0054|consen 1071 ISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRP 1150 (1381)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCC
Confidence 23799999999999999999999999999999999999999999999986665555558899999999999999999999
Q ss_pred CCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1255 ELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1255 ~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
+.|+|||||||+|+||||||||||||||||||+++|+|+.||.+|+|.
T Consensus 1151 ~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~ 1198 (1381)
T KOG0054|consen 1151 NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEIL 1198 (1381)
T ss_pred CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEE
Confidence 999999999999999999999999999999999999999999999985
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-164 Score=1653.50 Aligned_cols=1268 Identities=77% Similarity=1.213 Sum_probs=1012.9
Q ss_pred ccccccccccCCCCCCCCCccccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccchHHHHHHHH
Q 000746 27 MASGPLDWYCRPVANGTWAKTVDSTFGAYTTCAVDSLVISISHSVLLGLCIFRIWLMNKNSKARRYRLSSNCYNYMLGLL 106 (1303)
Q Consensus 27 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 106 (1303)
|+..+++++|++++.+.|++.++..|+|++|||+++++.++|++++++++++++|.+.+..+...+..+..+....+.++
T Consensus 1 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (1622)
T PLN03130 1 MGFEPLDWYCRPVPNGVWAKKVDNAFGAYTPCATDSLVINISHLVLLGLCLYRIWLIKKDHKVQRFCLRSKWYNYFLALL 80 (1622)
T ss_pred CcchhhhhhcCCCccCCCCcccccccCCCCccHHhhHHHHHHHHHHHHHHHHHHHHhccccccCCccccchHHHHHHHHH
Confidence 55667788999877556888777779999999999999999999999999999998854222222111111222223233
Q ss_pred HHHHhhHHHHHHHHHHhhccCCCCCC--CcchH-HHHHHHHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHHHHHHH
Q 000746 107 ACYCTAEPLLRLVMGISIFNLDGETS--FAPFE-MVSLIIEALAWCSMLIMICLETKFYIREFRWYVRFGVIYVLVGDAV 183 (1303)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (1303)
.+++....+...+..+.....+.... ..+.. ++..++..++++++..+.+.+|.++.+++.....+|++. .+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 157 (1622)
T PLN03130 81 AAYCTAEPLFRLVMGISVLNLDGQTSLPPFEIVSLIVEALTWCSMLVMIGVETKIYIREFRWYVRFAVIYVLV---GDAV 157 (1622)
T ss_pred HHHHHHHHHHHHHHHhhhhccccccccccchhHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeehhHHHh---hHHH
Confidence 33333333322222111111121111 12222 444555555555555566666777766555332233222 1111
Q ss_pred HHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHccCCCCCCCcccCCcccccccccccCCCCCCCCCCccCChhhH
Q 000746 184 ILNLIIPMRDYYSRITLYLYISMVFCQALFGILILVYIPNLDPYPGYTIMQPEFVDNAEYEALPGGEHVCPERNASILSR 263 (1303)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~a~~~s~ 263 (1303)
.....+.....+.......++....+...+++++++.++...++..+.+...+...+.+|++.+.+++.+||+++|++||
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~a~~~s~ 237 (1622)
T PLN03130 158 MLNLVLSVKEYYSSFVLYLYISEVAAQVLFGILLLVYFPNLDPYPGYTPIGSESVDDYEYEELPGGEQICPERHANIFSR 237 (1622)
T ss_pred HHHHHHHHHHHHhccccceehhHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccccCCcccCCCCcccccCHHHH
Confidence 11111211111111000112222233333334443445544444444332212111224666666778899999999999
Q ss_pred HHHHchHHHHHhhhcCCCCCCCCCCCCccCcHHHHHHHHHHHHHHhhccCCchHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 000746 264 TSFGWMTPLLQLGYKKPITEKDVWKLDTWDQTEILIEKFHRCWIEESQRSKPWLLRALNNSFGGRFWLGGLFKIGNDLSQ 343 (1303)
Q Consensus 264 ~~f~Wl~~l~~~g~~~~L~~~dl~~l~~~~~s~~l~~~~~~~w~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 343 (1303)
++|||+||++++|||++|+.+|||+++++++++.+.++|++.|+++.++++|+++++++++|++.++.++++.++..++.
T Consensus 238 ~~F~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~ 317 (1622)
T PLN03130 238 IFFGWMTPLMQLGYKRPLTEKDVWKLDTWDQTETLYRSFQKCWDEELKKPKPWLLRALNNSLGGRFWLGGFFKIGNDLSQ 317 (1622)
T ss_pred HHHHHHHHHHHHHhcCCCChhhccCCChhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999987777899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCh
Q 000746 344 FVGPVLLNHLLQSMQRGDPAWIGYIYAFLIFVGVSFGVLTEAQYFQNVWRVGFRLRSTLVAAIFRKTLRLTHEARKGFPS 423 (1303)
Q Consensus 344 ~~~p~ll~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~L~~~i~~k~l~l~~~~~~~~~~ 423 (1303)
+++|++++.+++++.+++..+.++.++++++++.++..++.++|++...+++.++|..++..+|+|.++++....++.++
T Consensus 318 ~~~P~ll~~li~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~i~~k~L~l~~~~~~~~~~ 397 (1622)
T PLN03130 318 FVGPLLLNLLLESMQNGEPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTS 397 (1622)
T ss_pred HHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCH
Confidence 99999999999999765544557766666666666666667778777789999999999999999999999988888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 424 GKVTNMITTDANALQQISQQLHGLWSAPFRITLSMVLLYQQLGVASLLGSLMLVLMVPLQTFIISKMRKLTKEGLQWTDR 503 (1303)
Q Consensus 424 g~i~nl~s~Dv~~i~~~~~~~~~~~~~~~~i~~~~~~l~~~lg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (1303)
|+++|+|++|++++++....++.+|..|++++++++++|..+|++++++++++++++|++.++.+++++.+++.++.+|+
T Consensus 398 G~ivnl~s~Dv~~i~~~~~~l~~l~~~pl~ii~~~~lL~~~lg~~~l~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~ 477 (1622)
T PLN03130 398 GKITNLMTTDAEALQQICQQLHTLWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDK 477 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888999999999999999999999999999988888889999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHhhhhhhhhhCCCCCHHHH
Q 000746 504 RVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSIPVVVTVVSFGTFTLLGGDLTPARA 583 (1303)
Q Consensus 504 r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~ 583 (1303)
|.+.++|+++||++||+||||+.+.+++++.|++|.+..++......+..++....+.++.+++|++|.+.++.++++.+
T Consensus 478 r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fg~~~~~~g~Lt~g~v 557 (1622)
T PLN03130 478 RIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIPVLVTVVSFGVFTLLGGDLTPARA 557 (1622)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 99999999999999999999999999999999999999998888888777777777767778889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcEEEEeeEEEeCCC--CCccceee
Q 000746 584 FTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILMPNPPLEPELPAVSIKNGNFSWDSK--SPTLSNIN 661 (1303)
Q Consensus 584 f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~--~~~L~~i~ 661 (1303)
|+++++++.+..|+..+|..+..+.++++|++||++|++.++....+.++..+..+.|+++|++|+|+++ +++|+|+|
T Consensus 558 f~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~~vL~~in 637 (1622)
T PLN03130 558 FTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLPNPPLEPGLPAISIKNGYFSWDSKAERPTLSNIN 637 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCcccCCCCceEEEeeEEEccCCCCCceeecee
Confidence 9999999999999999999999999999999999999986553221111112223469999999999753 47999999
Q ss_pred eEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcCeEEEEccCcccccccHHHHHccCCCCChhhHHHHHHHH
Q 000746 662 LDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVS 741 (1303)
Q Consensus 662 l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~~iayv~Q~p~l~~~TireNI~~g~~~~~~~~~~vl~~~ 741 (1303)
|+|++|++++|+||||||||||+++|+|+++|.+||.+.++++|+||||+||||++||||||+||+++|+++|++++++|
T Consensus 638 l~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~ 717 (1622)
T PLN03130 638 LDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVT 717 (1622)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHh
Confidence 99999999999999999999999999999999995577899999999999999999999999999999999999999999
Q ss_pred hhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHH------------------------HHHHhHhcCCCEEEEEe
Q 000746 742 ALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF------------------------NSCIKEELRGKTRILVT 797 (1303)
Q Consensus 742 ~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~------------------------~~~i~~~~~~~Tvilvt 797 (1303)
+|++|++.||+||+|+|||+|.+|||||||||+||||++ ++++.+.++++|+|+||
T Consensus 718 ~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVT 797 (1622)
T PLN03130 718 ALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVT 797 (1622)
T ss_pred CcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEE
Confidence 999999999999999999999999999999999999953 45566667899999999
Q ss_pred cCCCcccccCEEEEEeCCEEEEecCHHHHHhcchHHHHHHHHhccchhhhhhhhcccccccccccCcccccccccccCCC
Q 000746 798 NQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLMENAGKMEEMEEREEKDDSINSNQEVSKPVANRAVQVNEFP 877 (1303)
Q Consensus 798 H~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (1303)
|+++.++.||+|++|++|+|+++|+|+|++++++.|.++.++.++.++..+++.. +.. .+....+...... +..+
T Consensus 798 H~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~--~~~~ 872 (1622)
T PLN03130 798 NQLHFLSQVDRIILVHEGMIKEEGTYEELSNNGPLFQKLMENAGKMEEYVEENGE-EED--DQTSSKPVANGNA--NNLK 872 (1622)
T ss_pred CCHhHHHhCCEEEEEeCCEEEEeCCHHHHHhcchhHHHHHHhccccccccccccc-ccc--ccccccccccccc--cccc
Confidence 9999999999999999999999999999999889998887654322111110000 000 0000000000000 0000
Q ss_pred CCccccccccCCCcccchhhhhhcCccchhHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhhhHHHhhhcccccCCCCCc
Q 000746 878 KNESYTKKGKRGRSVLVKQEERETGIVSGSVLTRYKNALGGPWVIMILFACYLSTEVLRISSSTWLSFWTDQSTSKNYNP 957 (1303)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vy~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~ 957 (1303)
.......+.++.+..+.++|+++.|.+++++|++|+++.|+.+.++++++++++.+++.+++++|+++|++.........
T Consensus 873 ~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~ 952 (1622)
T PLN03130 873 KDSSSKKKSKEGKSVLIKQEERETGVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPKTHGP 952 (1622)
T ss_pred ccccccccccccchhhhhHHHHhcCccCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCch
Confidence 00000001111112244567889999999999999999887766666666677778888899999999998644333345
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCcchhHHHhhccHHHHHHHHHHHHH
Q 000746 958 GFYIAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILRAPMLFFHTNPIGRVINRFSRDLGDIDRNVASFVN 1037 (1303)
Q Consensus 958 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~ 1037 (1303)
.+|+++|++++++..++.+++.+++...+.++++++|++++++++++|++|||++|+|+|+|||++|++.+|+.++..+.
T Consensus 953 ~~~~~i~~~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~ 1032 (1622)
T PLN03130 953 LFYNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVN 1032 (1622)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888899999888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHhcChhhHhhcCcHH
Q 000746 1038 MFMNQLWQLLSTFVLIGIVSTISLWAIMPLLILFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYD 1117 (1303)
Q Consensus 1038 ~~~~~~~~~i~~~v~i~~~~~~~~~~~~pl~~~~~~i~~~~~~~~r~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~ 1117 (1303)
.++..++.+++.++++++++++.+++++|++++++.++.+|.+++|++++.+.++++|+++++.|+++|++|||||++++
T Consensus 1033 ~~~~~~~~~i~~~i~i~~~~~~~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~ 1112 (1622)
T PLN03130 1033 MFLGQIFQLLSTFVLIGIVSTISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYD 1112 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHH
Confidence 99999999998888888888888888888888888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcccccccchhHHHHHHHHHHHHHHHHHHH
Q 000746 1118 RMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGIMIWLIATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGV 1197 (1303)
Q Consensus 1118 ~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~ 1197 (1303)
+|.+.+.+..|.+.+..+.....++|++.++++++++++++++.+.+...+.......+.+.+|++++|+..+...+.++
T Consensus 1113 ~f~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l 1192 (1622)
T PLN03130 1113 RMAEINGRSMDNNIRFTLVNMSSNRWLAIRLETLGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAV 1192 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998899999999999988887777666655543322222334678999999999999999999
Q ss_pred HHHHHHHhhhhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceeeecCCCEEEEEC
Q 000746 1198 LRQASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVG 1277 (1303)
Q Consensus 1198 ~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVG 1277 (1303)
.+.+..+|+.++|+||+.+|++.|+|++...++..+++.||.+|+|+|+||+|+|+++.++|||||||+|+|||||||||
T Consensus 1193 ~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVG 1272 (1622)
T PLN03130 1193 LRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVG 1272 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEEC
Confidence 99999999999999999999999888654333344566899999999999999998877789999999999999999999
Q ss_pred CCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1278 RTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1278 rTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|||||||||+++|+|+|||++|+|+
T Consensus 1273 rSGSGKSTLl~lL~rl~~p~~G~I~ 1297 (1622)
T PLN03130 1273 RTGAGKSSMLNALFRIVELERGRIL 1297 (1622)
T ss_pred CCCCCHHHHHHHHhCcCCCCCceEE
Confidence 9999999999999999999999985
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-160 Score=1616.40 Aligned_cols=1260 Identities=75% Similarity=1.212 Sum_probs=1000.5
Q ss_pred cccccCCCCCCCCCccccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccchHHHHHHHHHHHHh
Q 000746 32 LDWYCRPVANGTWAKTVDSTFGAYTTCAVDSLVISISHSVLLGLCIFRIWLMNKNSKARRYRLSSNCYNYMLGLLACYCT 111 (1303)
Q Consensus 32 ~~~~c~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (1303)
.+++|++++++.|++.++..|+|++|||+++++.++|++++++++++++|.+.++++...+..+..+....+.++.+++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (1495)
T PLN03232 6 LNWYCKPIAEGFWEKTVDGAFGAYTPCAIDSLVMIVSHSVLLGLCFYRIWIILDNAKAQIYVLRKKYYNCVLGILACYCV 85 (1495)
T ss_pred HHhhcCCccccCCCcccccccCCCCccHHhhHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchHHHHHHHHHHHHHH
Confidence 35699987645688776667999999999999999999999999999999885211111111111111122222222222
Q ss_pred hHHHHHHHHHHhhccCCCC--CCCcchH-HHHHHHHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHHHHHHHHHHHh
Q 000746 112 AEPLLRLVMGISIFNLDGE--TSFAPFE-MVSLIIEALAWCSMLIMICLETKFYIREFRWYVRFGVIYVLVGDAVILNLI 188 (1303)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (1303)
...+...+..+.....+.. ....+.. ++..++..++++++..+.+.||.++.+++.....+|++. .+.+.....
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 162 (1495)
T PLN03232 86 VEPVLRLVMGISLFDMDEETDLPPFEVASLMVEAFAWFSMLVLIGLETKQYVKEFRWYVRFGVVYVLV---ADAVLLDLV 162 (1495)
T ss_pred HHHHHHHHHHhhhhccccccccccchhHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeehhHhh---hhHHHHHHH
Confidence 2222211111111111111 1122223 555566666666666666777888777665333333322 011111111
Q ss_pred hhccccccchhhHHHHHHHHHHHHHHHHHHHHccCCCCCCCcccCCcccccccccccCCCCCCCCCCccCChhhHHHHHc
Q 000746 189 IPMRDYYSRITLYLYISMVFCQALFGILILVYIPNLDPYPGYTIMQPEFVDNAEYEALPGGEHVCPERNASILSRTSFGW 268 (1303)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~a~~~s~~~f~W 268 (1303)
+.....+............++...+++++++.+|...+++.+.....+...+.+|+..|.+++.+||+++|+|||++|||
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~a~~~s~~~f~w 242 (1495)
T PLN03232 163 LPLKNSINRTALYLCISSRCCQALFGILLLVYIPELDPYPGYHILNNESLDNVEYDALRGGENICPERYASIFSRIYFSW 242 (1495)
T ss_pred HHHHHHHhccccceehhHHHHHHHHHHHHHHhcccCCCCCcccccccccccccccccccccCCCCccccCCHHHHHHHHH
Confidence 11111111100001112222222233333344554444433221111111112345555567789999999999999999
Q ss_pred hHHHHHhhhcCCCCCCCCCCCCccCcHHHHHHHHHHHHHHhhccCCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 000746 269 MTPLLQLGYKKPITEKDVWKLDTWDQTEILIEKFHRCWIEESQRSKPWLLRALNNSFGGRFWLGGLFKIGNDLSQFVGPV 348 (1303)
Q Consensus 269 l~~l~~~g~~~~L~~~dl~~l~~~~~s~~l~~~~~~~w~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ 348 (1303)
+||++++|||++|+.+|||+++++++++.++++|++.|+++.++++|++++++++++++.++.+++++++.+++.+++|+
T Consensus 243 ~~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~P~ 322 (1495)
T PLN03232 243 MTPLMQLGYRKPITEKDVWQLDQWDQTETLIKRFQRCWTEESRRPKPWLLRALNNSLGGRFWLGGIFKIGHDLSQFVGPV 322 (1495)
T ss_pred HHHHHHHHhcCCCChhhccCCChhhhHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988776789999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCChHHHHH
Q 000746 349 LLNHLLQSMQRGDPAWIGYIYAFLIFVGVSFGVLTEAQYFQNVWRVGFRLRSTLVAAIFRKTLRLTHEARKGFPSGKVTN 428 (1303)
Q Consensus 349 ll~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~L~~~i~~k~l~l~~~~~~~~~~g~i~n 428 (1303)
+++.+++++.++++.+.++.++++++++.++..++.++|++...+.+.++|..++..+|+|.++++....++.++|+++|
T Consensus 323 ll~~li~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~l~~~i~~k~l~l~~~~~~~~~~G~i~n 402 (1495)
T PLN03232 323 ILSHLLQSMQEGDPAWVGYVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTN 402 (1495)
T ss_pred HHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHH
Confidence 99999999976555556777777778888777788788888888999999999999999999999998888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 429 MITTDANALQQISQQLHGLWSAPFRITLSMVLLYQQLGVASLLGSLMLVLMVPLQTFIISKMRKLTKEGLQWTDRRVSLT 508 (1303)
Q Consensus 429 l~s~Dv~~i~~~~~~~~~~~~~~~~i~~~~~~l~~~lg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 508 (1303)
+|++|++++++....++.+|..|++++++++++|..+|++++++++++++++|++.++.+++++.+++.++.+|+|.+.+
T Consensus 403 ~ls~Dv~~i~~~~~~l~~l~~~p~~ii~~~~~l~~~lg~~~l~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~ 482 (1495)
T PLN03232 403 MITTDANALQQIAEQLHGLWSAPFRIIVSMVLLYQQLGVASLFGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGII 482 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888899999999999999999999999999988888888889888999999999999999999999999
Q ss_pred HHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHhhhhhhhhhCCCCCHHHHHHHHH
Q 000746 509 NEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSIPVVVTVVSFGTFTLLGGDLTPARAFTSLS 588 (1303)
Q Consensus 509 ~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~f~~l~ 588 (1303)
+|.++||++||+|+||+.+.+++++.|++|.+..++......+..++....+.++.+++||+|.+.++.++++.+|++++
T Consensus 483 ~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~~~v~~~~lt~g~vf~~l~ 562 (1495)
T PLN03232 483 NEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIPVVVTLVSFGVFVLLGGDLTPARAFTSLS 562 (1495)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999998888877777666666666777788999998899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcEEEEeeEEEeCC--CCCccceeeeEecC
Q 000746 589 LFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILMPNPPLEPELPAVSIKNGNFSWDS--KSPTLSNINLDIPV 666 (1303)
Q Consensus 589 l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~f~~~~--~~~~L~~i~l~i~~ 666 (1303)
++..+..|+..+|..+..+.++.+|++||+++++.+++...+.++..+..+.|+++|++|+|++ ++++|+|+||+|++
T Consensus 563 l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~~~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~ 642 (1495)
T PLN03232 563 LFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQNPPLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPV 642 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccCCcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcC
Confidence 9999999999999999999999999999999998665322111111122346999999999975 35799999999999
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcCeEEEEccCcccccccHHHHHccCCCCChhhHHHHHHHHhhHHH
Q 000746 667 GSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHD 746 (1303)
Q Consensus 667 G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~~iayv~Q~p~l~~~TireNI~~g~~~~~~~~~~vl~~~~l~~~ 746 (1303)
||+++|+||||||||||+++|+|+++|.+|+...++++|+||||+||||++||||||+||+++|+++|++++++|+|++|
T Consensus 643 Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~d 722 (1495)
T PLN03232 643 GSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHD 722 (1495)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHH
Confidence 99999999999999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCccccCCCCCCchHHHHHHHHHHHHH------------------------HHHHhHhcCCCEEEEEecCCCc
Q 000746 747 LDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF------------------------NSCIKEELRGKTRILVTNQLHF 802 (1303)
Q Consensus 747 i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~------------------------~~~i~~~~~~~TvilvtH~~~~ 802 (1303)
++.+|+||+|+|||+|.+|||||||||+||||++ ++++.+.++++|+|+|||+++.
T Consensus 723 i~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~ 802 (1495)
T PLN03232 723 LDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHF 802 (1495)
T ss_pred HHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhh
Confidence 9999999999999999999999999999999954 3456666689999999999999
Q ss_pred ccccCEEEEEeCCEEEEecCHHHHHhcchHHHHHHHHhccchhhhhhhhcccccccccccCcccccccccccCCCCCccc
Q 000746 803 LPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLMENAGKMEEMEEREEKDDSINSNQEVSKPVANRAVQVNEFPKNESY 882 (1303)
Q Consensus 803 l~~aD~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 882 (1303)
++.||+|++|++|+|+++|+|+|+.++++.|.++.+..++.++.+++++. ..+..+. .+... . +........
T Consensus 803 l~~aD~Ii~L~~G~i~~~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~--~--~~~~~~~~~ 874 (1495)
T PLN03232 803 LPLMDRIILVSEGMIKEEGTFAELSKSGSLFKKLMENAGKMDATQEVNTN--DENILKL--GPTVT--I--DVSERNLGS 874 (1495)
T ss_pred HHhCCEEEEEeCCEEEEecCHHHHHhcchhHHHHHHhccccccccccccc--ccccccc--ccccc--c--ccccccccc
Confidence 99999999999999999999999999989999887654422111110000 0000000 00000 0 000000000
Q ss_pred cccccCCCcccchhhhhhcCccchhHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhhhHHHhhhcccccCCCCCchHHHH
Q 000746 883 TKKGKRGRSVLVKQEERETGIVSGSVLTRYKNALGGPWVIMILFACYLSTEVLRISSSTWLSFWTDQSTSKNYNPGFYIA 962 (1303)
Q Consensus 883 ~~~~~~~~~~~~~~e~~~~g~v~~~vy~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~ 962 (1303)
..+.++.+....++|+++.|.+++++|++|+++.|+.+.++++++++++.+++.+++++|+++|.+..........+|++
T Consensus 875 ~~~~~~~~~~~~~~e~~~~g~v~~~vy~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~l~ 954 (1495)
T PLN03232 875 TKQGKRGRSVLVKQEERETGIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVLRVSSSTWLSIWTDQSTPKSYSPGFYIV 954 (1495)
T ss_pred ccccccchhhhhhHHHHhcCcccHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcchHHH
Confidence 00011111224567888899999999999999988766666666667777888889999999999754322233568899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCcchhHHHhhccHHHHHHHHHHHHHHHHHH
Q 000746 963 IYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILRAPMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQ 1042 (1303)
Q Consensus 963 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~~~~~~ 1042 (1303)
+|++++++..++.+++.+++...+.++++++|++++++++++|++|||++|+|+++|||++|++.+|+.++..+..++..
T Consensus 955 ~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~ 1034 (1495)
T PLN03232 955 VYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQ 1034 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHH
Confidence 99999999888999999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHhcChhhHhhcCcHHHHHHH
Q 000746 1043 LWQLLSTFVLIGIVSTISLWAIMPLLILFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKI 1122 (1303)
Q Consensus 1043 ~~~~i~~~v~i~~~~~~~~~~~~pl~~~~~~i~~~~~~~~r~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~~~~~ 1122 (1303)
++.+++.++++++++++..++++|+.+++++++.+|.+++|++++.+..+++|++++++|+++|++|||+|+.+++|.++
T Consensus 1035 ~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~ 1114 (1495)
T PLN03232 1035 LWQLLSTFALIGTVSTISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKI 1114 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHH
Confidence 88888888887777777777778887777778888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 1123 NGKSMDNNIRFTLANTSSNRWLTIRLETLGGIMIWLIATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQAS 1202 (1303)
Q Consensus 1123 ~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~~~~~~ 1202 (1303)
+.+..|.+.+..+.....++|+..++++++++++++++.+.+...+..+....+.+.+|++++|+..+..+++++.+.+.
T Consensus 1115 ~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~ 1194 (1495)
T PLN03232 1115 NGKSMDNNIRFTLANTSSNRWLTIRLETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQAS 1194 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888899999999888776666665555543332222233456788899999999999999999999
Q ss_pred HHhhhhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCC
Q 000746 1203 RAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAG 1282 (1303)
Q Consensus 1203 ~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSG 1282 (1303)
++|++++|+||+.++++.|+|++...+...+++.||.+|+|+|+||+|+|+++.++||||+||+|+||||||||||||||
T Consensus 1195 ~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSG 1274 (1495)
T PLN03232 1195 KAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAG 1274 (1495)
T ss_pred HHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCC
Confidence 99999999999999999888765322233355679999999999999999877778999999999999999999999999
Q ss_pred HHHHHHHHhhcccCCCCeee
Q 000746 1283 KSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1283 KSTLi~lL~R~yd~~~G~I~ 1302 (1303)
||||+++|+|+|||++|+|+
T Consensus 1275 KSTL~~lL~rl~~p~~G~I~ 1294 (1495)
T PLN03232 1275 KSSMLNALFRIVELEKGRIM 1294 (1495)
T ss_pred HHHHHHHHhCCCcCCCceEE
Confidence 99999999999999999985
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-150 Score=1525.09 Aligned_cols=1224 Identities=33% Similarity=0.549 Sum_probs=981.5
Q ss_pred ccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhhc-CCcccccccccchHHHHHHHHHHHHhhHHHHHHHHHHhhcc
Q 000746 48 VDSTFGAYTTCAVDSLVISISHSVLLGLCIFRIWLMNK-NSKARRYRLSSNCYNYMLGLLACYCTAEPLLRLVMGISIFN 126 (1303)
Q Consensus 48 ~~~~~~~~~~c~~~~~~~~~p~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (1303)
+++...|++|||++++++++|+++|++++++|++++++ +++... + +.++.+|.....++++++.+. ++...+..
T Consensus 16 ~~~~~~d~t~~f~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~-~--~~~~~~k~~~~~~~~~~~~~~--~~~~~~~~ 90 (1522)
T TIGR00957 16 WHTSNPDFTKCFQNTVLAWVPCFYLWVCFPCYFLYLSRHDRGYIQ-M--THLNKTKTALGFLLWIVCWAD--LFYSFWER 90 (1522)
T ss_pred CCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCC-c--chHHHHHHHHHHHHHHHHHHH--HHHHHHhc
Confidence 56666789999999999999999999999999999973 333111 1 123445655555554444311 12222221
Q ss_pred CCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHHHHHHHHHHHhhhcccccc----chhhHH
Q 000746 127 LDGETSFAPFEMVSLIIEALAWCSMLIMICLETKFYIREFRWYVRFGVIYVLVGDAVILNLIIPMRDYYS----RITLYL 202 (1303)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 202 (1303)
+.. ....+..++++++.++++++.+++++.||.++.||+.....+ ++...+++.+..|+.|....... ......
T Consensus 91 ~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~s~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (1522)
T TIGR00957 91 SHG-RAPAPVFLVSPTLLGITMLLATFLIQLERRKGVQSSGIMLTF-WLVALVCALAILRSKILLALKEDAIVDPFRDTT 168 (1522)
T ss_pred ccc-ccccchhhhhhHHHHHHHHHHHHHHHHHHhcccCCCcchhHH-HHHHHHHHHHHHHHHHHHhhcccccccceehhh
Confidence 111 111245678888899999999999999999999998643333 33334578888888875422100 000111
Q ss_pred HHHHHHHHHHHHHHHHHHccCCCCCCCcccCCcccccccccccCCCCCCCCCCccCChhhHHHHHchHHHHHhhhcCCCC
Q 000746 203 YISMVFCQALFGILILVYIPNLDPYPGYTIMQPEFVDNAEYEALPGGEHVCPERNASILSRTSFGWMTPLLQLGYKKPIT 282 (1303)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~a~~~s~~~f~Wl~~l~~~g~~~~L~ 282 (1303)
+...+.++ .++++ ++...++ .|..++ ...+.+.+||+++|++||++|||+||++++|||++|+
T Consensus 169 ~~~~~~~~----~~~~~-~~~~~~~---~~~~~~---------~~~~~~~~~e~~a~~~s~~~f~W~~pl~~~g~~~~L~ 231 (1522)
T TIGR00957 169 FYIYFALV----LSQLV-LSCFSDK---SPLFSE---------TNHDPNPCPESSASFLSRITFWWITGMAVYGYRQPLE 231 (1522)
T ss_pred HHHHHHHH----HHHHH-HHhhcCC---CCcccc---------ccccCCCCCcccCCHHHHHHHHHhHHHHHHHhcCCCC
Confidence 11211111 11112 2210111 111100 0012346899999999999999999999999999999
Q ss_pred CCCCCCCCccCcHHHHHHHHHHHHHHhhc-----------------------------------------cCCchHHHHH
Q 000746 283 EKDVWKLDTWDQTEILIEKFHRCWIEESQ-----------------------------------------RSKPWLLRAL 321 (1303)
Q Consensus 283 ~~dl~~l~~~~~s~~l~~~~~~~w~~~~~-----------------------------------------~~~~~l~~~l 321 (1303)
.+|||+++++++++.+.++|++.|+++.+ .++++|++++
T Consensus 232 ~~dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l 311 (1522)
T TIGR00957 232 ESDLWSLNKEDTSEMVVPVLVENWKKECKKTRKQPVSAVYGKKDPSKPKGSSQLDANEEVEALIVKSPHKPRKPSLFKVL 311 (1522)
T ss_pred hhhccCCCHhHhHHHHHHHHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccCCccHHHHH
Confidence 99999999999999999999999987621 1246899999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 322 NNSFGGRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGD-PAWIGYIYAFLIFVGVSFGVLTEAQYFQNVWRVGFRLRS 400 (1303)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 400 (1303)
+++|++.++.+++++++..++.+++|++++.+++++.+++ +.+.+|.+++++++..++..++.++|.+...+++.++|.
T Consensus 312 ~~~~~~~~l~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~ 391 (1522)
T TIGR00957 312 YKTFGPYFLMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMAPDWQGYFYTGLLFVCACLQTLILHQYFHICFVSGMRIKT 391 (1522)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999986543 334577776666666666677788888888999999999
Q ss_pred HHHHHHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 401 TLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQLHGLWSAPFRITLSMVLLYQQLGVASLLGSLMLVLMV 480 (1303)
Q Consensus 401 ~L~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~~~~~~~~~~i~~~~~~l~~~lg~~~l~~~~~~~~~~ 480 (1303)
.++..+|+|.++++....++.++|+++|+|++|++++.++...+|.+|..|++++++++++|..+|++++++++++++++
T Consensus 392 ~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~~~~~~~~~~i~~~~~ll~~~~g~~~l~~l~~~~~~~ 471 (1522)
T TIGR00957 392 AVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLATYINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMV 471 (1522)
T ss_pred HHHHHHHHHHHhCChhhcCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999999999999988888999999999999999999988899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000746 481 PLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSIP 560 (1303)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~ 560 (1303)
|++.++.+++++.++++++..|+|.+.++|+++|||+||+++||+.+.+++++.|++|++..++..+...+..+.....+
T Consensus 472 ~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~ 551 (1522)
T TIGR00957 472 PLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTP 551 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998888887777666666667
Q ss_pred HHhHHhhhhhhhhhC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--CCCCCC
Q 000746 561 VVVTVVSFGTFTLLG--GDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILMP--NPPLEP 636 (1303)
Q Consensus 561 ~~~~~~~f~~~~~~~--~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~--~~~~~~ 636 (1303)
.++.+++|+.|.+.. +.++++.+|+++++++.+..|+..++..+..+.++.+|++||++|++.++..... .....+
T Consensus 552 ~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~ 631 (1522)
T TIGR00957 552 FLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERRTIKP 631 (1522)
T ss_pred HHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccccccccCC
Confidence 777777888887763 5799999999999999999999999999999999999999999999765432110 011111
Q ss_pred -CCCcEEEEeeEEEeCCC-CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcCeEEEEccCccc
Q 000746 637 -ELPAVSIKNGNFSWDSK-SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISWI 714 (1303)
Q Consensus 637 -~~~~i~~~~~~f~~~~~-~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~~iayv~Q~p~l 714 (1303)
....++++|++|+|+++ +++|+|+||++++|++++|+||||||||||+++|+|+++|.+| .+.++++|+||||+||+
T Consensus 632 ~~~~~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G-~i~~~g~i~yv~Q~~~l 710 (1522)
T TIGR00957 632 GEGNSITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEG-HVHMKGSVAYVPQQAWI 710 (1522)
T ss_pred CCCCcEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCc-EEEECCEEEEEcCCccc
Confidence 12369999999999753 4799999999999999999999999999999999999999987 67788999999999999
Q ss_pred ccccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-------------
Q 000746 715 FNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN------------- 781 (1303)
Q Consensus 715 ~~~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~------------- 781 (1303)
|++||||||.||.++|+++|++++++|++.+|++.+|+||+|.+||+|.+|||||||||+||||++.
T Consensus 711 ~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~sa 790 (1522)
T TIGR00957 711 QNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSA 790 (1522)
T ss_pred cCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999642
Q ss_pred -----------HHH--hHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhcchHHHHHHHHhccchhhhh
Q 000746 782 -----------SCI--KEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLMENAGKMEEMEE 848 (1303)
Q Consensus 782 -----------~~i--~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~ 848 (1303)
.++ .+..+++|+|+|||+++.++.||+|++|++|+++++|+++++.++++.|.++.......++.+.
T Consensus 791 LD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~ 870 (1522)
T TIGR00957 791 VDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEFLRTYAPDEQQGH 870 (1522)
T ss_pred cCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhcchhHHHHHHhhcccccccc
Confidence 222 2245789999999999999999999999999999999999999888888888764332111100
Q ss_pred hhhc---ccccccccc-------c-----Ccccccc--cccccCCC-------CCccccccccCCCcccchhhhhhcCcc
Q 000746 849 REEK---DDSINSNQE-------V-----SKPVANR--AVQVNEFP-------KNESYTKKGKRGRSVLVKQEERETGIV 904 (1303)
Q Consensus 849 ~~~~---~~~~~~~~~-------~-----~~~~~~~--~~~~~~~~-------~~~~~~~~~~~~~~~~~~~e~~~~g~v 904 (1303)
.++. ....+..+. . ..+.... ....+... ..+....+.++......++|+++.|.+
T Consensus 871 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v 950 (1522)
T TIGR00957 871 LEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGDQSRHHGSSAELQKAEAKEETWKLMEADKAQTGQV 950 (1522)
T ss_pred ccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccchhhhHHHHHHhcCcc
Confidence 0000 000000000 0 0000000 00000000 000000000001122345677889999
Q ss_pred chhHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhhhHHHhhhcccccC--CCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 905 SGSVLTRYKNALGGPWVIMILFACYLSTEVLRISSSTWLSFWTDQSTS--KNYNPGFYIAIYTILAFGQVTVTLLNSYWL 982 (1303)
Q Consensus 905 ~~~vy~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~--~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 982 (1303)
++++|++|++++|... +++.++++++.+++.+++++|+++|++.... ......+|+++|++++++..++.++..++.
T Consensus 951 ~~~~y~~Y~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~~~iy~~l~i~~~~~~~~~~~~~ 1029 (1522)
T TIGR00957 951 ELSVYWDYMKAIGLFI-TFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSLRLSVYGALGILQGFAVFGYSMAV 1029 (1522)
T ss_pred cHHHHHHHHHHcCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999987543 3333444555667788899999999975321 112345677889999888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCcccccccCCcchhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 983 IISSLRAAKRLHDSMLNSILRAPMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLW 1062 (1303)
Q Consensus 983 ~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~~~~~~~~~~i~~~v~i~~~~~~~~~ 1062 (1303)
...+.++++++|++++++++++|++|||++|+|+++|||++|++.+|+.++..+..++..++.+++.++++++.+|++++
T Consensus 1030 ~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~ 1109 (1522)
T TIGR00957 1030 SIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAV 1109 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHhcChhhHhhcCcHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 000746 1063 AIMPLLILFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNR 1142 (1303)
Q Consensus 1063 ~~~pl~~~~~~i~~~~~~~~r~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~ 1142 (1303)
+++|+++++++++++|.+++|++++.+.++++|+++++.|+++|++|||+|+++++|.+++.+..|...+..+.....++
T Consensus 1110 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 1189 (1522)
T TIGR00957 1110 IIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANR 1189 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcCCC
Q 000746 1143 WLTIRLETLGGIMIWLIATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPS 1222 (1303)
Q Consensus 1143 wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~ 1222 (1303)
|+.+++++++.+++++++.+.+...+ ...+|.+++++.|+.++..++.++++.++++|++++|+||+.+|++.|+
T Consensus 1190 ~~~~~~~~~~~~~~~~~~~~~v~~~~-----~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~ 1264 (1522)
T TIGR00957 1190 WLAVRLECVGNCIVLFAALFAVISRH-----SLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEK 1264 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999877766555555543322 2347889999999999999999999999999999999999999999887
Q ss_pred CCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1223 EAPGMVESNRPPPAWPSSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1223 E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|.+...+...+++.||.+|+|+|+||+|+|+++.++|||||||+|+||||||||||||||||||+++|+|+|||++|+|+
T Consensus 1265 e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~ 1344 (1522)
T TIGR00957 1265 EAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEII 1344 (1522)
T ss_pred CccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEE
Confidence 76432233345667999999999999999987767899999999999999999999999999999999999999999985
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-136 Score=1374.92 Aligned_cols=1039 Identities=27% Similarity=0.477 Sum_probs=863.7
Q ss_pred CCCCccCChhhHHHHHchHHHHHhhhcCCCCCCCCCCCCccCcHHHHHHHHHHHHHHhhc--cCCchHHHHHHHHHhHHH
Q 000746 252 VCPERNASILSRTSFGWMTPLLQLGYKKPITEKDVWKLDTWDQTEILIEKFHRCWIEESQ--RSKPWLLRALNNSFGGRF 329 (1303)
Q Consensus 252 ~~pe~~a~~~s~~~f~Wl~~l~~~g~~~~L~~~dl~~l~~~~~s~~l~~~~~~~w~~~~~--~~~~~l~~~l~~~~~~~~ 329 (1303)
.+||+++|++||++|||+||++++|||++|+.+|||+++++++++.+.++|++.|+++.+ +++++|+++++++|++.+
T Consensus 3 ~~pe~~a~~~s~~~F~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~L~~~l~~~~~~~~ 82 (1490)
T TIGR01271 3 RSPVEKANFLSKLFFWWTRPILRKGYRQKLELSDIYQIPSFDSADNLSERLEREWDRELASAKKNPKLLNALRRCFFWRF 82 (1490)
T ss_pred CCccccCCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChHHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999999999999999998643 356899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 330 WLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDP--AWIGYIYAFLIFVGVSFGVLTEAQYFQNVWRVGFRLRSTLVAAIF 407 (1303)
Q Consensus 330 ~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~L~~~i~ 407 (1303)
+..++++++..++.+++|++++.+++++...+. .+.++++++.+++..++..++.+++.+...+.+.++|.++...+|
T Consensus 83 ~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~iy 162 (1490)
T TIGR01271 83 VFYGILLYFGEATKAVQPLLLGRIIASYDPFNAPEREIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLIY 162 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999854222 235666666666666666677777777778899999999999999
Q ss_pred HHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 408 RKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQLHGLWSAPFRITLSMVLLYQQLGVASLLGSLMLVLMVPLQTFII 487 (1303)
Q Consensus 408 ~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~~~~~~~~~~i~~~~~~l~~~lg~~~l~~~~~~~~~~~~~~~~~ 487 (1303)
+|.++++....++.++|+++|+|++|++++.++...+|.+|..|++++++++++|.++|++++++++++++++|++.++.
T Consensus 163 ~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~~~~~~~~~ 242 (1490)
T TIGR01271 163 KKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALAHFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQACLG 242 (1490)
T ss_pred HHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHhh
Q 000746 488 SKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSIPVVVTVVS 567 (1303)
Q Consensus 488 ~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (1303)
+++.++++++++..|+|.+.++|+++|||+||+|+||+.+.+++++.|++|++..++..+...+..++....+.++++++
T Consensus 243 ~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (1490)
T TIGR01271 243 QKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFFSGFFVVFLS 322 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988887777777777777788889
Q ss_pred hhhhhhhCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcEEEEee
Q 000746 568 FGTFTLLGGDLTPARAFTSLSLFAVLRFPLN-MLPNLLSQVVNANVSLQRLEELLLAEERILMPNPPLEPELPAVSIKNG 646 (1303)
Q Consensus 568 f~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~-~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~~ 646 (1303)
|++|.+.++ ++++.+|+++++++.+..|+. .+|..+..+.++.+|++||++||..++....+ .......++++|+
T Consensus 323 f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~---~~~~~~~i~~~~~ 398 (1490)
T TIGR01271 323 VVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLE---YNLTTTEVEMVNV 398 (1490)
T ss_pred HHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc---ccCCCCceEEecc
Confidence 998887654 789999999999999999984 79999999999999999999999876532111 1112235899999
Q ss_pred EEEeCCC---------------------------------CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCC
Q 000746 647 NFSWDSK---------------------------------SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP 693 (1303)
Q Consensus 647 ~f~~~~~---------------------------------~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~ 693 (1303)
+|.|+.. +++|+|+||+|++|++++|+||+|||||||+++|+|+++|
T Consensus 399 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~ 478 (1490)
T TIGR01271 399 TASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEP 478 (1490)
T ss_pred eEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 9999531 2589999999999999999999999999999999999999
Q ss_pred CCCceEEEcCeEEEEccCcccccccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHH
Q 000746 694 LKDASVVIRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRV 773 (1303)
Q Consensus 694 ~~g~~~~~~~~iayv~Q~p~l~~~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRi 773 (1303)
.+| .+.++++|+||+|+||+|++||+|||+||.++++++|.+++++|+|++|++.+|+||+|.||++|.+|||||||||
T Consensus 479 ~~G-~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi 557 (1490)
T TIGR01271 479 SEG-KIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARI 557 (1490)
T ss_pred CCc-eEEECCEEEEEeCCCccCCccHHHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHH
Confidence 987 5678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH------------------------HHHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhc
Q 000746 774 SMARAVF------------------------NSCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 774 aLARAl~------------------------~~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
+||||++ +.++.+..+++|+|+|||+++.++.||+|++|++|++++.|+++++.+.
T Consensus 558 ~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~~ 637 (1490)
T TIGR01271 558 SLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAK 637 (1490)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHHHhc
Confidence 9999954 3455666689999999999999999999999999999999999999887
Q ss_pred chHHHHHHHHhccchh----------h--------h--------hhhh------ccccc-cc-------c----------
Q 000746 830 GRLFQKLMENAGKMEE----------M--------E--------EREE------KDDSI-NS-------N---------- 859 (1303)
Q Consensus 830 ~~~~~~l~~~~~~~~~----------~--------~--------~~~~------~~~~~-~~-------~---------- 859 (1303)
++.|.+.+.......+ . . +++. +.... +. +
T Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (1490)
T TIGR01271 638 RPDFSSLLLGLEAFDNFSAERRNSILTETLRRVSIDGDSTVFSGPETIKQSFKQPPPEFAEKRKQSIILNPIASARKFSF 717 (1490)
T ss_pred ChHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 6666665531110000 0 0 0000 00000 00 0
Q ss_pred -------------cc-cCcccc------c----cc-ccccCC---------------------C--C----Ccc----cc
Q 000746 860 -------------QE-VSKPVA------N----RA-VQVNEF---------------------P--K----NES----YT 883 (1303)
Q Consensus 860 -------------~~-~~~~~~------~----~~-~~~~~~---------------------~--~----~~~----~~ 883 (1303)
+. ...+.. . .. ...... + . .+. ..
T Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (1490)
T TIGR01271 718 VQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGEESLPRGNQYHHGLQHQAQRRQSVLQLMTHSNRGENRREQLQTSFR 797 (1490)
T ss_pred ccccccccccccccchhcccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccccccc
Confidence 00 000000 0 00 000000 0 0 000 00
Q ss_pred -------------c------c-cc-----------CC--CcccchhhhhhcCccchhHHHHHHHHcCchHHHHHHHHHHH
Q 000746 884 -------------K------K-GK-----------RG--RSVLVKQEERETGIVSGSVLTRYKNALGGPWVIMILFACYL 930 (1303)
Q Consensus 884 -------------~------~-~~-----------~~--~~~~~~~e~~~~g~v~~~vy~~y~~~~g~~~~~~~~~~~~~ 930 (1303)
. . .. +. .....++|+++.|.++|++|++|+++.|+++.+.+++++++
T Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vY~~Y~~~~g~~~~~~~~~~~~~ 877 (1490)
T TIGR01271 798 KKSSITQQNELASELDIYSRRLSKDSVYEISEEINEEDLKECFADERENVFETTTWNTYLRYITTNRNLVFVLIFCLVIF 877 (1490)
T ss_pred cccccccccccccccccccccccccccccccccchhhhhhhhhhHHHHhhcCcccHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 0 0 00 00 01123456778899999999999999876555555555566
Q ss_pred HHHHHHhhhhHHHhhhcccc------c-C-C-----------CCCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 931 STEVLRISSSTWLSFWTDQS------T-S-K-----------NYNPGFY-IAIYTILAFGQVTVTLLNSYWLIISSLRAA 990 (1303)
Q Consensus 931 ~~~~~~~~~~~~l~~w~~~~------~-~-~-----------~~~~~~~-~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 990 (1303)
+.+++..++++|+.+|.+.. . . . .....+| +++|++++++..++.+++.+++.+.+.+++
T Consensus 878 ~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 957 (1490)
T TIGR01271 878 LAEVAASLLGLWLITDNPSAPNYVDQQHANASSPDVQKPVIITPTSAYYIFYIYVGTADSVLALGFFRGLPLVHTLLTVS 957 (1490)
T ss_pred HHHHHHHHhhHHHHhcccccccccccccccCCCccccccccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788889999999887521 0 0 0 0011233 445555555555667778888899999999
Q ss_pred HHHHHHHHHHHHcCcccccccCCcchhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 991 KRLHDSMLNSILRAPMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLIL 1070 (1303)
Q Consensus 991 ~~lr~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~~~~~~~~~~i~~~v~i~~~~~~~~~~~~pl~~~ 1070 (1303)
+++|++++++++++|++|||++|+|+++|||++|++.+|+.++..+..++..++.+++.++++++.+|+++++++|++++
T Consensus 958 ~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~l~~~~l~~~ 1037 (1490)
T TIGR01271 958 KRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIAAIPVAVI 1037 (1490)
T ss_pred HHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988888888888888899888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHhcChhhHhhcCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 000746 1071 FYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLET 1150 (1303)
Q Consensus 1071 ~~~i~~~~~~~~r~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~ 1150 (1303)
+++++++|.+.+|++++.+..+++|+++++.|+++|+.|||+|++++++.+++.+..+...+..+.....++|+..++++
T Consensus 1038 ~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~ 1117 (1490)
T TIGR01271 1038 FIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQMRIDI 1117 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999999999999999999999999888888888899999999998
Q ss_pred HHHHHHHHHHHHHHHccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcCCCCCCCCCC-
Q 000746 1151 LGGIMIWLIATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAPGMVE- 1229 (1303)
Q Consensus 1151 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~- 1229 (1303)
++.+++..++.+++... . ...+.+|++++|+..+...+.++++.+.++|+.+.|++|+.+|++.|+|.+...+
T Consensus 1118 i~~~~~~~~~~l~~~~~-~-----~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~~~~ 1191 (1490)
T TIGR01271 1118 IFVFFFIAVTFIAIGTN-Q-----DGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGG 1191 (1490)
T ss_pred HHHHHHHHHHHHHHHHh-c-----CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccc
Confidence 76655444333333211 1 1246788889999999999999999999999999999999999998877542111
Q ss_pred -------------CCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccC
Q 000746 1230 -------------SNRPPPAWPSSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVEL 1296 (1303)
Q Consensus 1230 -------------~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~ 1296 (1303)
...+++.||.+|+|+|+||+|+|+++.++||+||||+|+||||||||||||||||||+++|+|+|+
T Consensus 1192 ~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~- 1270 (1490)
T TIGR01271 1192 GGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS- 1270 (1490)
T ss_pred ccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-
Confidence 112345799999999999999998877899999999999999999999999999999999999998
Q ss_pred CCCeee
Q 000746 1297 ERGENI 1302 (1303)
Q Consensus 1297 ~~G~I~ 1302 (1303)
++|+|+
T Consensus 1271 ~~G~I~ 1276 (1490)
T TIGR01271 1271 TEGEIQ 1276 (1490)
T ss_pred CCcEEE
Confidence 789985
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-127 Score=1287.22 Aligned_cols=1046 Identities=29% Similarity=0.488 Sum_probs=854.4
Q ss_pred CCCCCccCChhhHHHHHchHHHHHhhhcCCCCCCCCCCCCccCcHHHHHHHH----HH------HHHHhh----------
Q 000746 251 HVCPERNASILSRTSFGWMTPLLQLGYKKPITEKDVWKLDTWDQTEILIEKF----HR------CWIEES---------- 310 (1303)
Q Consensus 251 ~~~pe~~a~~~s~~~f~Wl~~l~~~g~~~~L~~~dl~~l~~~~~s~~l~~~~----~~------~w~~~~---------- 310 (1303)
.+.||+++||+.++++.|++|++.+..|..|+++|||+...+.++-+...++ ++ +|+-..
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (1560)
T PTZ00243 58 TPVPEETASWFQRYYYGWVYEYVLLASKEQLTEEDLPPPTRDVRAHECGLRLSRAVQAAMYERNAWNCMVGAEVVSTLDA 137 (1560)
T ss_pred CCCccchhhHHHHHHHHHHHHHHHHHHHhhcccccCCCCcchhhHHHHhHHHHHHHHHHHHhhcccccccccEEEeeccc
Confidence 3579999999999999999999999999999999999988887775443333 32 243210
Q ss_pred --c-----------------------------------------------------------------------------
Q 000746 311 --Q----------------------------------------------------------------------------- 311 (1303)
Q Consensus 311 --~----------------------------------------------------------------------------- 311 (1303)
+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (1560)
T PTZ00243 138 SSRGVLRWVGVPQQGGYTRMMAGVEWSVPPALRTAARSDDSGASPFFNGVAHGEHLFTPEQSNMSTLEEPTDVRLYLSST 217 (1560)
T ss_pred cccceEEeecccccCCCcceeeeeeeccCchhhhcccCCCCCCccccccccccccccCcccCCceeeeeeheeeEeeccc
Confidence 0
Q ss_pred -----------cCCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcch-HHHHHHHHHHHHHHH
Q 000746 312 -----------RSKPWLLRALNNSFGGRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPAW-IGYIYAFLIFVGVSF 379 (1303)
Q Consensus 312 -----------~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~-~~~~~~~~~~~~~~~ 379 (1303)
++..++++++++++++.++..++++++.+++.+++|++++.+++++++++..+ .++++++++++..++
T Consensus 218 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~~~~~~g~~l~~~l~~~~~~ 297 (1560)
T PTZ00243 218 GSVVRPGPPPTPKRLSLLRTLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNATWGRGLGLVLTLFLTQLI 297 (1560)
T ss_pred ccccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHH
Confidence 00137999999999999999999999999999999999999999986654332 355566666777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccc--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 380 GVLTEAQYFQNVWRVGFRLRSTLVAAIFRKTLRLTHEARK--GFPSGKVTNMITTDANALQQISQQLHGLWSAPFRITLS 457 (1303)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~lr~~L~~~i~~k~l~l~~~~~~--~~~~g~i~nl~s~Dv~~i~~~~~~~~~~~~~~~~i~~~ 457 (1303)
..++.++|.+...+.+.++|.+|...+|+|.++++..... +.++|+++|+|++|++++.+++..++.+|..|++++++
T Consensus 298 ~~~~~~~~~~~~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~~~~l~~~Pl~li~~ 377 (1560)
T PTZ00243 298 QSVCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQYCMYLWSSPMVLLLS 377 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888889999999999999999999999886654 56899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHH
Q 000746 458 MVLLYQQLGVASLLGSLMLVLMVPLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDD 537 (1303)
Q Consensus 458 ~~~l~~~lg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~ 537 (1303)
++++|..+|+++++|++++++++|++.++.+++.+.+++.++.+|+|++.++|+++|||+||++|||+.|.+++++.|++
T Consensus 378 ~~lL~~~lG~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~ 457 (1560)
T PTZ00243 378 ILLLSRLVGWCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRAR 457 (1560)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhHHhhhhhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 538 ELSWFRKAQFLSAFNSFILNSIPVVVTVVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRL 617 (1303)
Q Consensus 538 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri 617 (1303)
|++..++......+..++....|.++.+++|++|.+.++.++++.+|+++++++.+..|+..+|..+..+.++.+|++||
T Consensus 458 El~~l~~~~~~~~~~~~~~~~~p~l~~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI 537 (1560)
T PTZ00243 458 ELRYLRDVQLARVATSFVNNATPTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRI 537 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888888888888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhc-------C---------C--C--------------C---C-------------------------CCCC
Q 000746 618 EELLLAEERIL-------M---------P--N--------------P---P-------------------------LEPE 637 (1303)
Q Consensus 618 ~~~l~~~~~~~-------~---------~--~--------------~---~-------------------------~~~~ 637 (1303)
++||+.+|... . + . + + ....
T Consensus 538 ~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (1560)
T PTZ00243 538 STFLECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHP 617 (1560)
T ss_pred HHHHcCccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccc
Confidence 99997654100 0 0 0 0 0 0000
Q ss_pred CCcEEEEeeEEEeC---------------------------------------CCCCccceeeeEecCCcEEEEEcCCCC
Q 000746 638 LPAVSIKNGNFSWD---------------------------------------SKSPTLSNINLDIPVGSLVAIVGGTGE 678 (1303)
Q Consensus 638 ~~~i~~~~~~f~~~---------------------------------------~~~~~L~~i~l~i~~G~~~~ivG~sGs 678 (1303)
.+.+.++|++|+|+ +++++|+|+||+|++|++++|+|||||
T Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGs 697 (1560)
T PTZ00243 618 SPSVVVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGS 697 (1560)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCC
Confidence 12456677766542 113589999999999999999999999
Q ss_pred ChHHHHHHHhcCCCCCCCceEEEcCeEEEEccCcccccccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccc
Q 000746 679 GKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEI 758 (1303)
Q Consensus 679 GKSTLl~~llg~~~~~~g~~~~~~~~iayv~Q~p~l~~~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~i 758 (1303)
|||||+++|+|+++|++| .+.++++|+||||+||+|++||+|||.|+.++++++|.+++++|++++|++.+|+|++|.+
T Consensus 698 GKSTLL~~i~G~~~~~~G-~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i 776 (1560)
T PTZ00243 698 GKSTLLQSLLSQFEISEG-RVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEI 776 (1560)
T ss_pred cHHHHHHHHhcCCCCCCc-EEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHh
Confidence 999999999999999987 5667889999999999999999999999998888899999999999999999999999999
Q ss_pred cCCCCCCchHHHHHHHHHHHHH------------------------HHHHhHhcCCCEEEEEecCCCcccccCEEEEEeC
Q 000746 759 GERGVNISGGQKQRVSMARAVF------------------------NSCIKEELRGKTRILVTNQLHFLPHVDRIILVSE 814 (1303)
Q Consensus 759 ge~G~~LSGGQkQRiaLARAl~------------------------~~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~ 814 (1303)
|++|.+|||||||||+||||++ ++++...++++|+|+|||+++.++.||+|++|++
T Consensus 777 ~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~ 856 (1560)
T PTZ00243 777 GEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGD 856 (1560)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEEC
Confidence 9999999999999999999954 2344445578999999999999999999999999
Q ss_pred CEEEEecCHHHHHhcchHHHHHHHHhccchhhhhhhhcccccccccccCc--ccccccccccCCCCCccccccccCCCcc
Q 000746 815 GMIKEEGSFEELSKHGRLFQKLMENAGKMEEMEEREEKDDSINSNQEVSK--PVANRAVQVNEFPKNESYTKKGKRGRSV 892 (1303)
Q Consensus 815 G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 892 (1303)
|+++++|+++++.+.+ .|.++........+..+.+...+....+..... .............. .............
T Consensus 857 G~i~~~G~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 934 (1560)
T PTZ00243 857 GRVEFSGSSADFMRTS-LYATLAAELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAE-GGDGAALDAAAGR 934 (1560)
T ss_pred CEEEEecCHHHHHhCh-HHHHHHHhhcccccccccccccccccccccccccccccccccccccccc-cccccccccccch
Confidence 9999999999998754 566665432111100000000000000000000 00000000000000 0000000011123
Q ss_pred cchhhhhhcCccchhHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhhhHHHhhhcccccCCCCCchHHHHHHHHHHHHHH
Q 000746 893 LVKQEERETGIVSGSVLTRYKNALGGPWVIMILFACYLSTEVLRISSSTWLSFWTDQSTSKNYNPGFYIAIYTILAFGQV 972 (1303)
Q Consensus 893 ~~~~e~~~~g~v~~~vy~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~i~~~l~~~~~ 972 (1303)
+.++|+++.|.++|++|+.|++++|+....+++++++++.+++..++++|+++|++.... .....|+++|+++.++..
T Consensus 935 l~~~e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~l~~~~~~~~~~~~~~~wl~~w~~~~~~--~~~~~~l~~y~~~~~~~~ 1012 (1560)
T PTZ00243 935 LMTREEKASGSVPWSTYVAYLRFCGGLHAAGFVLATFAVTELVTVSSGVWLSMWSTRSFK--LSAATYLYVYLGIVLLGT 1012 (1560)
T ss_pred hhhHHHHhcCcccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC--CCcccHHHHHHHHHHHHH
Confidence 456677888999999999999998876655555555666778888899999999875321 234567788888777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCcchhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 973 TVTLLNSYWLIISSLRAAKRLHDSMLNSILRAPMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVL 1052 (1303)
Q Consensus 973 ~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~~~~~~~~~~i~~~v~ 1052 (1303)
++.+++.+.....+.++++++|++++++++++|++|||++++|+|+|||++|++.+|+.++..+..++..++.+++.+++
T Consensus 1013 ~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~ 1092 (1560)
T PTZ00243 1013 FSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILV 1092 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666667778888999999999999999999999999999999999999999999999888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHhcChhhHhhcCcHHHHHHHHHHHHHhhhH
Q 000746 1053 IGIVSTISLWAIMPLLILFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIR 1132 (1303)
Q Consensus 1053 i~~~~~~~~~~~~pl~~~~~~i~~~~~~~~r~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~~~~~~~~~~d~~~~ 1132 (1303)
+++..|+++++++|+.++++.+..+|.+..|++++.+..+++|++++++|+++|+.|||+|++++++.+++.+..|...+
T Consensus 1093 ~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~ 1172 (1560)
T PTZ00243 1093 TSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYS 1172 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 88888877777778777778888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 000746 1133 FTLANTSSNRWLTIRLETLGGIMIWLIATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVE 1212 (1303)
Q Consensus 1133 ~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~~~~~~~~e~~~~sve 1212 (1303)
..+.....++|+.++++++..++++.++.+++...... ......+.+++++.|+.++..++.++++.+.++|+.++|+|
T Consensus 1173 ~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~e 1251 (1560)
T PTZ00243 1173 CSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLR-ATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVE 1251 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988889999999999887765544443333211000 11123688899999999999999999999999999999999
Q ss_pred HHHHhhcC-CCCCCCC-C----------------------CCCCCC---CCCCCcceEEEEEEEEEeCCCCCCcccccee
Q 000746 1213 RVGTYIDL-PSEAPGM-V----------------------ESNRPP---PAWPSSGSIKFEDVVLRYRPELPPVLHGLSF 1265 (1303)
Q Consensus 1213 Ri~~~~~~-~~E~~~~-~----------------------~~~~~~---~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isl 1265 (1303)
|+.+|++. |+|+... . ++..++ +.||..|+|+|+||+|+|+++.++|||||||
T Consensus 1252 Ri~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~vL~~vsf 1331 (1560)
T PTZ00243 1252 RLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRGVSF 1331 (1560)
T ss_pred HHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCceeecceE
Confidence 99999964 4332100 0 011111 2356779999999999998877789999999
Q ss_pred eecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1266 TVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1266 ~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
+|+||||||||||||||||||+++|+|+|||++|+|+
T Consensus 1332 ~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~ 1368 (1560)
T PTZ00243 1332 RIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIR 1368 (1560)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 9999999999999999999999999999999999985
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-98 Score=926.27 Aligned_cols=945 Identities=18% Similarity=0.253 Sum_probs=635.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcch---H--HHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHH
Q 000746 329 FWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPAW---I--GYIYAFLIFVGVS--F-GVLTEAQYFQNVWRVGFRLRS 400 (1303)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~---~--~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~lr~ 400 (1303)
+..+.+..++.++..++..++.+.+.+.+....... . -+.+. .++++.. + ..+...-+.+..-|...|+|.
T Consensus 30 m~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~~~~~~~~~~~~l~-~~~lg~~~~~~~~~q~~c~~~~geRq~~riR~ 108 (1228)
T KOG0055|consen 30 MILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTNKIASSEVSKVALY-FVYLGVGVFISGFIQVSCWMRTGERQTARIRS 108 (1228)
T ss_pred HHHHHHHHHhcCccchHHHHHHHHHHHHHHhccchhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666677788888765432110 0 01111 1111111 1 111111222333466677777
Q ss_pred HHHHHHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHH-HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 401 TLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQIS-QQLHGLW----SAPFRITLSMVLLYQQLGVASLLGSLM 475 (1303)
Q Consensus 401 ~L~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~-~~~~~~~----~~~~~i~~~~~~l~~~lg~~~l~~~~~ 475 (1303)
.+..++.+|...+ ++...+|++.++|+.|++++++.+ ..+..++ .....++++++..|+ .+++.+.+
T Consensus 109 ~yl~~iLrQdi~~----fD~~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~~~W~----Ltlv~l~~ 180 (1228)
T KOG0055|consen 109 KYLKAILRQDIGW----FDTNSTGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFYYGWK----LTLVMLSF 180 (1228)
T ss_pred HHHHHHHhCccce----eecccccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 7777766655554 445566999999999999999864 2332222 222233344444333 23333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 476 LVLMVPLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFI 555 (1303)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~ 555 (1303)
..++......+++.+.+...+.++...+..+...|+++++|++.+|+.|+...+++.+.-+.-.+...+.....++....
T Consensus 181 ~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi~~g~~~G~~~G~ 260 (1228)
T KOG0055|consen 181 IPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIKKGLFKGLGLGF 260 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 22223333455666777778888888899999999999999999999999999999887776666655555544443322
Q ss_pred HHHH--hHHhHHhhhhhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--
Q 000746 556 LNSI--PVVVTVVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILMPN-- 631 (1303)
Q Consensus 556 ~~~~--~~~~~~~~f~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~-- 631 (1303)
.... ......++||...+..+..++|.+++++.........+.+....+..+..+++|..+|.+.++..+..+...
T Consensus 261 ~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~ 340 (1228)
T KOG0055|consen 261 TFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETIDRKPSIDPYSKG 340 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhcCCCCCCccccc
Confidence 2211 223456778877777888999998888766666666788888889999999999999999998655432211
Q ss_pred -CCCCCCCCcEEEEeeEEEeCCCC--CccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE--------
Q 000746 632 -PPLEPELPAVSIKNGNFSWDSKS--PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-------- 700 (1303)
Q Consensus 632 -~~~~~~~~~i~~~~~~f~~~~~~--~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-------- 700 (1303)
.......+.|+++||.|+||.++ ++|+|+||+|++|+.+++||||||||||++++|.|+|+|++|.+..
T Consensus 341 ~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~ 420 (1228)
T KOG0055|consen 341 GRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNL 420 (1228)
T ss_pred CCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhc
Confidence 11122356899999999999876 7999999999999999999999999999999999999999985431
Q ss_pred ----EcCeEEEEccCcccccccHHHHHccCCC-CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHH
Q 000746 701 ----IRGTVAYVPQISWIFNATLRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSM 775 (1303)
Q Consensus 701 ----~~~~iayv~Q~p~l~~~TireNI~~g~~-~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaL 775 (1303)
+|++||.|+|+|.||++||+|||.+|+| .+++++.++++.++..+++..+|+|++|.+||+|..|||||||||||
T Consensus 421 ~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAI 500 (1228)
T KOG0055|consen 421 NLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAI 500 (1228)
T ss_pred chHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHH
Confidence 4668999999999999999999999996 68899999999999999999999999999999999999999999999
Q ss_pred HHHHH-----------------------HHHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhcchH
Q 000746 776 ARAVF-----------------------NSCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRL 832 (1303)
Q Consensus 776 ARAl~-----------------------~~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~~~ 832 (1303)
|||++ ++++++..+|+|.|+||||++++++||+|++|++|+|+|.|+|+||++.+|.
T Consensus 501 ARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h~ELi~~~G~ 580 (1228)
T KOG0055|consen 501 ARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELIALGGI 580 (1228)
T ss_pred HHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEecCHHHHHhccch
Confidence 99954 4567777899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccchhhhhhhhcccccccccccCccc-ccccccccCCCCCccccccccCCCcccchhhhhhcCccchhHHHH
Q 000746 833 FQKLMENAGKMEEMEEREEKDDSINSNQEVSKPV-ANRAVQVNEFPKNESYTKKGKRGRSVLVKQEERETGIVSGSVLTR 911 (1303)
Q Consensus 833 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vy~~ 911 (1303)
|.++++.+....+.++.+++.+..+......... .......+.............+.......+++ ....+++
T Consensus 581 Y~~lv~~Q~~~~~~~~~~~~~~~~~~~~~s~~~s~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~------~~~s~~~ 654 (1228)
T KOG0055|consen 581 YSSLVRLQELEKAAEDEEEEESLKEERSRSLKSSSSSPSLSRGSNRSNLLSVKPEGEDPEEPVSEED------EKVSFWR 654 (1228)
T ss_pred HHHHHHHHhhhhhhhccccccchhhhhhhccccccccccccCCcccccccccccccccccccccccc------ccccHHH
Confidence 9999976532221111000000000000000000 00000000000000000000000000001111 1112333
Q ss_pred HHHHcCchH-HHHHHHHHHHHHH----HHHhhhhHHHhhhccccc-CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 912 YKNALGGPW-VIMILFACYLSTE----VLRISSSTWLSFWTDQST-SKNYNPGFYIAIYTILAFGQVTVTLLNSYWLIIS 985 (1303)
Q Consensus 912 y~~~~g~~~-~~~~~~~~~~~~~----~~~~~~~~~l~~w~~~~~-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 985 (1303)
-++...+-| .+++..++.++.. ++.......+........ ........|.++|++++++..++.+++.|++.++
T Consensus 655 i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~~q~~~f~~~ 734 (1228)
T KOG0055|consen 655 IFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNFLQHYFFGIA 734 (1228)
T ss_pred HHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333222 2222222222221 122222222222221111 1112234588899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCcccccc--cCCcchhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 986 SLRAAKRLHDSMLNSILRAPMLFFH--TNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWA 1063 (1303)
Q Consensus 986 ~~~~~~~lr~~l~~~ll~~p~~fFd--~~~~G~ilnR~s~D~~~vd~~l~~~~~~~~~~~~~~i~~~v~i~~~~~~~~~~ 1063 (1303)
+++.+.++|.++|+++++.+++||| +|. |+|.+|+.+|...+...+...+..++..+..++..+++.++..|.++++
T Consensus 735 ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W~lalv 813 (1228)
T KOG0055|consen 735 GEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGWRLALV 813 (1228)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998 466 9999999999999999999999999998888888888888888877766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHhcChhhHhhcCcHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 000746 1064 IMPLLILFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNRW 1143 (1303)
Q Consensus 1064 ~~pl~~~~~~i~~~~~~~~r~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w 1143 (1303)
++.+.|++++....+.+......+.+............|++++++||++|+.|+++.+.+.+.++...+...... .|
T Consensus 814 ~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~---~i 890 (1228)
T KOG0055|consen 814 VLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRG---LI 890 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 554444443333333322222223333333344567899999999999999999999999999887777665543 23
Q ss_pred HHHHHHHHHH-------HHHHHHHHHHHHccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 000746 1144 LTIRLETLGG-------IMIWLIATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGT 1216 (1303)
Q Consensus 1144 l~~~l~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~~~~~~~~e~~~~sveRi~~ 1216 (1303)
.++...+-.. +.+++++.+ +. .+... +..+...+..+..-...+........++-.+..|+.++++
T Consensus 891 ~gl~f~~sqs~~~~~~A~~f~~G~~L-i~-~g~~~-----~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~ 963 (1228)
T KOG0055|consen 891 SGLGFGFSQSLLFFVYALSFWYGARL-IS-NGEMT-----FEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFE 963 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH-Hh-cCCcC-----HHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHH
Confidence 3433333222 222222222 22 11111 1222111111111223344455566788889999999999
Q ss_pred hhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeC--CCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcc
Q 000746 1217 YIDLPSEAPGMVESNRPPPAWPSSGSIKFEDVVLRYR--PELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIV 1294 (1303)
Q Consensus 1217 ~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~--~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~y 1294 (1303)
++|.+++.+...+. .....+.+|+|+|+||+|+|+ |+ .+||+|+||+|++||+||+||||||||||++.||.|||
T Consensus 964 i~dr~~~i~~~~~~--~~~~~~~~G~I~~~~V~F~YPsRP~-~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfY 1040 (1228)
T KOG0055|consen 964 ILDRKPTIDPDSTS--GGKLPNVKGDIEFRNVSFAYPTRPD-VPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFY 1040 (1228)
T ss_pred HhcCCCCCCCCCCC--CCccccceeEEEEeeeEeeCCCCCC-chhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 99987654322111 111224789999999999995 33 37999999999999999999999999999999999999
Q ss_pred cCCCCeee
Q 000746 1295 ELERGENI 1302 (1303)
Q Consensus 1295 d~~~G~I~ 1302 (1303)
||++|.|.
T Consensus 1041 dp~~G~V~ 1048 (1228)
T KOG0055|consen 1041 DPDAGKVK 1048 (1228)
T ss_pred CCCCCeEE
Confidence 99999985
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-89 Score=918.96 Aligned_cols=964 Identities=16% Similarity=0.199 Sum_probs=638.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 318 LRALNNSFGGRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPAWIGYIYAFLIFVGVSFGVLTEAQYFQNVWRVGFR 397 (1303)
Q Consensus 318 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (1303)
++...+.+++.++.+.++.++.+++.++.|++++.+++.+..++.. ......+++++++ ..++...+.+...+++.+
T Consensus 51 ~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~~~--~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~ 127 (1466)
T PTZ00265 51 FKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGENV--NDIIFSLVLIGIF-QFILSFISSFCMDVVTTK 127 (1466)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH--HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3333445566778888899999999999999999999976432211 1111111111111 111111122234567888
Q ss_pred HHHHHHHHHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 398 LRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQIS-QQLHGLWSAPFRITLSMVLLYQQLGVASLLGSLML 476 (1303)
Q Consensus 398 lr~~L~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~-~~~~~~~~~~~~i~~~~~~l~~~lg~~~l~~~~~~ 476 (1303)
+...++..+|++.++++...++..+.|++.++++.|++.+++.+ ..+..++..++.+++++++++..-+..+++.++++
T Consensus 128 ~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw~Lalv~l~~~ 207 (1466)
T PTZ00265 128 ILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLCITCVF 207 (1466)
T ss_pred HHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 88889999999999999988888899999999999999998864 34555555566566555544433333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 477 VLMVPLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFIL 556 (1303)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~ 556 (1303)
.+++.+..++.+++++..++..+..++..+.+.|.++|+++||.|+.|+.+.+++.+..++..+...+......+...+.
T Consensus 208 pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~~~~~ 287 (1466)
T PTZ00265 208 PLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIGMI 287 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333345566777777777777778899999999999999999999999999998766665554444444444322222
Q ss_pred HHHh--HHhHHhhhhhhhhhCC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000746 557 NSIP--VVVTVVSFGTFTLLGG--------DLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEER 626 (1303)
Q Consensus 557 ~~~~--~~~~~~~f~~~~~~~~--------~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~ 626 (1303)
.... ..+.++++|.+.+..+ .++++.+++.+........++..+...+..+..+.+|.+||.++++.+++
T Consensus 288 ~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~~~~ 367 (1466)
T PTZ00265 288 NGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRKPL 367 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 2221 2234566788777654 57888777765544444445556666788999999999999999986543
Q ss_pred hcCCCC-CCCCCCCcEEEEeeEEEeCCC--CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE---
Q 000746 627 ILMPNP-PLEPELPAVSIKNGNFSWDSK--SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV--- 700 (1303)
Q Consensus 627 ~~~~~~-~~~~~~~~i~~~~~~f~~~~~--~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~--- 700 (1303)
.+.... ...+....|+++|++|+|+++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.+..
T Consensus 368 ~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g 447 (1466)
T PTZ00265 368 VENNDDGKKLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDS 447 (1466)
T ss_pred CCCCCCCccCCCCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCC
Confidence 211111 111122369999999999854 36999999999999999999999999999999999999999985432
Q ss_pred ----------EcCeEEEEccCcccccccHHHHHccCCC------------------------------------------
Q 000746 701 ----------IRGTVAYVPQISWIFNATLRKNILFGSE------------------------------------------ 728 (1303)
Q Consensus 701 ----------~~~~iayv~Q~p~l~~~TireNI~~g~~------------------------------------------ 728 (1303)
+|++|+||+|+|.+|++||+|||.+|..
T Consensus 448 ~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (1466)
T PTZ00265 448 HNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSN 527 (1466)
T ss_pred cchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhccc
Confidence 1346999999999999999999999741
Q ss_pred ----------------CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-----------
Q 000746 729 ----------------FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN----------- 781 (1303)
Q Consensus 729 ----------------~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~----------- 781 (1303)
.++++++++++.+++++++..+|+|++|.+|++|.+|||||||||+||||++.
T Consensus 528 ~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpT 607 (1466)
T PTZ00265 528 TTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEAT 607 (1466)
T ss_pred ccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 34567888999999999999999999999999999999999999999999643
Q ss_pred ------------HHHhHhc--CCCEEEEEecCCCcccccCEEEEEeCC--------------------------------
Q 000746 782 ------------SCIKEEL--RGKTRILVTNQLHFLPHVDRIILVSEG-------------------------------- 815 (1303)
Q Consensus 782 ------------~~i~~~~--~~~TvilvtH~~~~l~~aD~ii~l~~G-------------------------------- 815 (1303)
+.+++.. +++|+|+||||+++++.||+|++|++|
T Consensus 608 SaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1466)
T PTZ00265 608 SSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKNNKDDNN 687 (1466)
T ss_pred cccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCcccccccccccccccccccccccccccccccc
Confidence 3444443 489999999999999999999999886
Q ss_pred ---------------EEEEecCHHHHHh-cchHHHHHHHHhccchhhhhhh--hcccccccc--cccC-c--ccc-ccc-
Q 000746 816 ---------------MIKEEGSFEELSK-HGRLFQKLMENAGKMEEMEERE--EKDDSINSN--QEVS-K--PVA-NRA- 870 (1303)
Q Consensus 816 ---------------~i~~~g~~~~l~~-~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~--~~~~-~--~~~-~~~- 870 (1303)
+|+|+|+|+||++ .+|.|..+++.+.........+ +........ .... . +.. ...
T Consensus 688 ~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 767 (1466)
T PTZ00265 688 NNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSDMKSSAYKDSERGYDPDEMNGNS 767 (1466)
T ss_pred ccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhccccccccccccccccccccccccccccccccccccccc
Confidence 5999999999998 6899999987653221110000 000000000 0000 0 000 000
Q ss_pred -ccccCCC--CCccc--cc-cccCCCcccchhhh-----hhcCccchhHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhh
Q 000746 871 -VQVNEFP--KNESY--TK-KGKRGRSVLVKQEE-----RETGIVSGSVLTRYKNALGGPWVIMILFACYLSTEVLRISS 939 (1303)
Q Consensus 871 -~~~~~~~--~~~~~--~~-~~~~~~~~~~~~e~-----~~~g~v~~~vy~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~ 939 (1303)
....+.. ..... .. ............++ ...+. ....+.+++.... ..+++.+++.++..++....
T Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 844 (1466)
T PTZ00265 768 KHENESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPN-NLRIVYREIFSYK--KDVTIIALSILVAGGLYPVF 844 (1466)
T ss_pred cccccccccccccccccccccchhccccchhhhhccccccccch-hHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 0000000 00000 00 00000000000000 00100 1111122221111 11222232333334444455
Q ss_pred hHHHhhhcccccCC---CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccc--CCc
Q 000746 940 STWLSFWTDQSTSK---NYNPGFYIAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILRAPMLFFHT--NPI 1014 (1303)
Q Consensus 940 ~~~l~~w~~~~~~~---~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~fFd~--~~~ 1014 (1303)
++.++.+++..... ......|.+++++++++..++.+++.++..+.+.++..++|.++|++++++|++|||+ +++
T Consensus 845 ~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~ 924 (1466)
T PTZ00265 845 ALLYAKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAP 924 (1466)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCH
Confidence 55666665532111 1112345666777777778888899999999999999999999999999999999986 899
Q ss_pred chhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHH-
Q 000746 1015 GRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLILFYAAYLYYQSTARE-----VKRL- 1088 (1303)
Q Consensus 1015 G~ilnR~s~D~~~vd~~l~~~~~~~~~~~~~~i~~~v~i~~~~~~~~~~~~pl~~~~~~i~~~~~~~~r~-----l~r~- 1088 (1303)
|++++|+++|++.++..+...+..++..++.+++.++++++.+|.++++++|++++.. +.+.+..+. .++.
T Consensus 925 G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 1001 (1466)
T PTZ00265 925 GLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFM---RVFAIRARLTANKDVEKKE 1001 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999888888888888888887777778888877666555443332 222222221 1111
Q ss_pred ------------hhhccchHHHHHHHHhcChhhHhhcCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH--
Q 000746 1089 ------------DSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGI-- 1154 (1303)
Q Consensus 1089 ------------~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~-- 1154 (1303)
+.+..+...+.++|+++|++|||+|+.|+++.+++.+..+...+..........+.....+.+..+
T Consensus 1002 ~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1081 (1466)
T PTZ00265 1002 INQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFIN 1081 (1466)
T ss_pred ccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122234567899999999999999999999999999888877665554443333333333332222
Q ss_pred -HHHHHHHHHHHccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcCCCCCCCCCCCCCC
Q 000746 1155 -MIWLIATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAPGMVESNRP 1233 (1303)
Q Consensus 1155 -~~~~~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~ 1233 (1303)
++++.+.+.+.. + ....+.+..++.+......++..+...+.+++.+..+.+|+.++++.+++.+...+....
T Consensus 1082 ~~~~~~G~~lv~~-g-----~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~ 1155 (1466)
T PTZ00265 1082 SFAYWFGSFLIRR-G-----TILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIR 1155 (1466)
T ss_pred HHHHHHHHHHHHc-C-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccc
Confidence 122222222221 1 122344444333333333455667778888999999999999999876543211111111
Q ss_pred -CCCCCCcceEEEEEEEEEeCCC-CCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccC
Q 000746 1234 -PPAWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVEL 1296 (1303)
Q Consensus 1234 -~~~wp~~G~I~f~nVsf~Y~~~-~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~ 1296 (1303)
+...+.+|+|+|+||+|+|+++ ..+||+|+||+|+|||+|||||+||||||||+++|+|||||
T Consensus 1156 ~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp 1220 (1466)
T PTZ00265 1156 IKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDL 1220 (1466)
T ss_pred cccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 0112356899999999999642 24799999999999999999999999999999999999999
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-70 Score=643.17 Aligned_cols=520 Identities=21% Similarity=0.303 Sum_probs=417.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 321 LNNSFGGRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPAWIGYI-YAFLIFVGVSFGVLTEAQYFQNVWRVGFRLR 399 (1303)
Q Consensus 321 l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 399 (1303)
+.+..++.+..+.++.++........|.++++++|.+..++......- ....+....+.++++...+.......+.++-
T Consensus 141 l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~~~a~~rv~ 220 (716)
T KOG0058|consen 141 LLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGLLQYAGERVV 220 (716)
T ss_pred HhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567778888888888889999999999999998876222111111 1111112222233333333333345666777
Q ss_pred HHHHHHHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 400 STLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQI-SQQLHGLWSAPFRITLSMVLLYQQLGVASLLGSLMLVL 478 (1303)
Q Consensus 400 ~~L~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~-~~~~~~~~~~~~~i~~~~~~l~~~lg~~~l~~~~~~~~ 478 (1303)
..++..+|++.++.....++++.+|++++|++.|++.+.+. ..++.....+.++.+.++.++...-+-.+++..+.+.+
T Consensus 221 ~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltlv~~i~~P~ 300 (716)
T KOG0058|consen 221 ARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTLVTLIVVPI 300 (716)
T ss_pred HHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhcH
Confidence 77777788888888888888999999999999999999874 45677777777777777655444333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 479 MVPLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNS 558 (1303)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~ 558 (1303)
+..+..++++..++..++.+++..+..+...|.+++|||||+|+.|+...+++.+.-++-.+..+|............+.
T Consensus 301 v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f~~~~~~ 380 (716)
T KOG0058|consen 301 VALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYGIFFGSTNL 380 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHhHhHHHH
Confidence 34445777888889999999999999999999999999999999999999999887777666666665555544333322
Q ss_pred H--hHHhHHhhhhhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC-CCC
Q 000746 559 I--PVVVTVVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILMPNP-PLE 635 (1303)
Q Consensus 559 ~--~~~~~~~~f~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~-~~~ 635 (1303)
. ...+.++.+|.+++..|.++++...+.+.+-..+..++..+...++.++++..|.+|+.++++.++..+.+.. ...
T Consensus 381 ~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~G~~~p~ 460 (716)
T KOG0058|consen 381 LGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLTGTLAPD 460 (716)
T ss_pred HHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCCCccccc
Confidence 2 2345678889999999999999999999999999999999999999999999999999999998765432211 011
Q ss_pred CCCCcEEEEeeEEEeCCCC--CccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------E
Q 000746 636 PELPAVSIKNGNFSWDSKS--PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------I 701 (1303)
Q Consensus 636 ~~~~~i~~~~~~f~~~~~~--~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------~ 701 (1303)
.-.+.|+|+||+|+||.++ ++|+|+||+|+|||.||+||||||||||++++|+++|+|++|.+.. +
T Consensus 461 ~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~l 540 (716)
T KOG0058|consen 461 HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYL 540 (716)
T ss_pred cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHH
Confidence 2456899999999999776 7999999999999999999999999999999999999999985421 4
Q ss_pred cCeEEEEccCcccccccHHHHHccCCC-CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHH
Q 000746 702 RGTVAYVPQISWIFNATLRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF 780 (1303)
Q Consensus 702 ~~~iayv~Q~p~l~~~TireNI~~g~~-~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~ 780 (1303)
|++||+|.|||.||++||+|||.+|.+ .++|++.++.+.++.+++|..+|+|++|.|||+|..||||||||||||||++
T Consensus 541 r~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALl 620 (716)
T KOG0058|consen 541 RRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALL 620 (716)
T ss_pred HHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHh
Confidence 678999999999999999999999986 6899999999999999999999999999999999999999999999999954
Q ss_pred -----------------------HHHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhcc-hHHHHH
Q 000746 781 -----------------------NSCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHG-RLFQKL 836 (1303)
Q Consensus 781 -----------------------~~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~-~~~~~l 836 (1303)
++++++..+++|||+|+||+++++.||+|+++++|+++|.|+|+||++++ +.|.++
T Consensus 621 r~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~~~~gly~~L 700 (716)
T KOG0058|consen 621 RNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLSKPNGLYAKL 700 (716)
T ss_pred cCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHhhCcccHHHHH
Confidence 34566777899999999999999999999999999999999999999887 799999
Q ss_pred HHHh
Q 000746 837 MENA 840 (1303)
Q Consensus 837 ~~~~ 840 (1303)
++.+
T Consensus 701 v~~q 704 (716)
T KOG0058|consen 701 VQRQ 704 (716)
T ss_pred HHHh
Confidence 8754
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-65 Score=632.09 Aligned_cols=520 Identities=23% Similarity=0.335 Sum_probs=418.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 318 LRALNNSFGGRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPAWIGYIYAFLIFVGVSFGVLTEAQYFQNVWRVGFR 397 (1303)
Q Consensus 318 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (1303)
++-..+.+++.+.-.++..++..++.++.|++.+.++|.+-.......-..+++.+.+..++..+....-.+....++.|
T Consensus 145 f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~~r 224 (709)
T COG2274 145 FIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDASRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLGKR 224 (709)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666777778888999999999999999999886544332222223322233333322221111223478889
Q ss_pred HHHHHHHHHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 398 LRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQ--LHGLWSAPFRITLSMVLLYQQLGVASLLGSLM 475 (1303)
Q Consensus 398 lr~~L~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~--~~~~~~~~~~i~~~~~~l~~~lg~~~l~~~~~ 475 (1303)
+...+...+|+|.+++|...++++++|++++|+ +|.+.|.+++.. +..+...++.++...++. ..-+..++++++.
T Consensus 225 ld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~-~el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~-~ys~~L~li~l~~ 302 (709)
T COG2274 225 LDLELSGRFFRHLLRLPLSYFEKRSVGEIISRV-RELEQIREFLTGSILTLIIDLLFALIFLAVMF-LYSWKLTLIVLAA 302 (709)
T ss_pred HhHHHHHHHHHHHHcCcHHHccCCChhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 999999999999999999999999999999997 789999987542 233444444444433333 3344444554444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 476 LVLMVPLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFI 555 (1303)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~ 555 (1303)
+++.+.+..++.+..++..++.++...++.+...|.++|+++||..+.|+.+..++++.-.+..+...+..........+
T Consensus 303 ~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 382 (709)
T COG2274 303 IPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTI 382 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 44444455667788888888889999999999999999999999999999999999998888887776666665555544
Q ss_pred HHHHhHH--hHHhhhhhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--
Q 000746 556 LNSIPVV--VTVVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILMPN-- 631 (1303)
Q Consensus 556 ~~~~~~~--~~~~~f~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~-- 631 (1303)
......+ +.++++|++.++++.+|.|.+++..++...+..|+..+.+.+.++.+++.+.+|+.++++.+++.+.+.
T Consensus 383 ~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~~ 462 (709)
T COG2274 383 KSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKTL 462 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccc
Confidence 4433322 456889999999999999999999999999999999999999999999999999999999876543322
Q ss_pred CCCCCCCCcEEEEeeEEEeCCCC-CccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----------
Q 000746 632 PPLEPELPAVSIKNGNFSWDSKS-PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV---------- 700 (1303)
Q Consensus 632 ~~~~~~~~~i~~~~~~f~~~~~~-~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~---------- 700 (1303)
....+..+.|+++|++|+|+.++ ++|+|+|++|++||+++|+|+||||||||+|+|+|+++|.+|.+..
T Consensus 463 ~~~~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~ 542 (709)
T COG2274 463 IHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDL 542 (709)
T ss_pred ccccccCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCH
Confidence 12223456899999999998774 5999999999999999999999999999999999999999985431
Q ss_pred --EcCeEEEEccCcccccccHHHHHccCCCC-ChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHH
Q 000746 701 --IRGTVAYVPQISWIFNATLRKNILFGSEF-DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMAR 777 (1303)
Q Consensus 701 --~~~~iayv~Q~p~l~~~TireNI~~g~~~-~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLAR 777 (1303)
+|++|+||+||+.+|+|||||||.+++|. ++|+..++++.++.++++..+|.|++|.|||+|.+|||||||||+|||
T Consensus 543 ~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalAR 622 (709)
T COG2274 543 ASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALAR 622 (709)
T ss_pred HHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999999974 569999999999999999999999999999999999999999999999
Q ss_pred HHHH-----------------------HHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhcchHHH
Q 000746 778 AVFN-----------------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQ 834 (1303)
Q Consensus 778 Al~~-----------------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~~~~~ 834 (1303)
|++. +.+.+..+++|+|+||||+++++.||+|+||++|+|+++|+|+|+++.+|.|.
T Consensus 623 aLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~~g~y~ 702 (709)
T COG2274 623 ALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQGGLYA 702 (709)
T ss_pred HhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHhcChHH
Confidence 9542 23455567999999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q 000746 835 KLMEN 839 (1303)
Q Consensus 835 ~l~~~ 839 (1303)
+++..
T Consensus 703 ~l~~~ 707 (709)
T COG2274 703 RLYQQ 707 (709)
T ss_pred HHHhc
Confidence 88754
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-63 Score=628.26 Aligned_cols=517 Identities=21% Similarity=0.255 Sum_probs=381.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 319 RALNNSFGGRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRG-DPAWIGYIYAFLIFVGVSFGVLTEAQYFQNVWRVGFR 397 (1303)
Q Consensus 319 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (1303)
+...+.+++.++.+.++.++..++..+.|++++.++|.+..+ ......+.+..++++..++..++.....+...+.+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (588)
T PRK11174 14 KQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVGFKAGQH 93 (588)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566778888888899999999999999999999976421 1111111122222222222222222222233467888
Q ss_pred HHHHHHHHHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 398 LRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQ-QLHGLWSAPFRITLSMVLLYQQLGVASLLGSLML 476 (1303)
Q Consensus 398 lr~~L~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~-~~~~~~~~~~~i~~~~~~l~~~lg~~~l~~~~~~ 476 (1303)
+...++..+|+|.++++....++.++|++++++++|++++++.+. .+..++...+.+++++++++..-+..+++.++.+
T Consensus 94 ~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~ 173 (588)
T PRK11174 94 IRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLILLGTA 173 (588)
T ss_pred HHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988899999999999999999998653 4555555544444444333322222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
Q 000746 477 VLMVPLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFL----SAFN 552 (1303)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~----~~~~ 552 (1303)
++...+...+.++.++..++.++..++..+.+.|.++|+++||.|++|+.+.+++++..++..+...+.... ..+.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (588)
T PRK11174 174 PLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLSSAVL 253 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222345667777888888888899999999999999999999999999988866555433332222222 2222
Q ss_pred HHHHHHHhHHhHHhhhhhhhhhCCCCCHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 553 SFILNSIPVVVTVVSFGTFTLLGGDLTPA---------RAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLA 623 (1303)
Q Consensus 553 ~~~~~~~~~~~~~~~f~~~~~~~~~l~~~---------~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~ 623 (1303)
.++... ..+ .++.++++.+. +.++.| .++.++.+...+..|+..++..+..+.++.++.+|+.++++.
T Consensus 254 ~~~~~~-~~~-~~~~~~~~~~~-g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~ 330 (588)
T PRK11174 254 EFFASI-SIA-LVAVYFGFSYL-GELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFLET 330 (588)
T ss_pred HHHHHH-HHH-HHHHHHHHHHh-cccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 222111 111 12223333333 444444 344555666778899999999999999999999999999976
Q ss_pred HhhhcCCCC-CCC-CCCCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE
Q 000746 624 EERILMPNP-PLE-PELPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI 701 (1303)
Q Consensus 624 ~~~~~~~~~-~~~-~~~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~ 701 (1303)
+++...... +.. +....|+++|++|.|++++++|+|+||+|++|++++|+||||||||||+++|+|++ |++|. +.+
T Consensus 331 ~~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~-I~i 408 (588)
T PRK11174 331 PLAHPQQGEKELASNDPVTIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGS-LKI 408 (588)
T ss_pred CCcccCCCccccCCCCCceEEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcE-EEE
Confidence 543211111 111 12346999999987765668999999999999999999999999999999999999 88874 443
Q ss_pred -------------cCeEEEEccCcccccccHHHHHccCCC-CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCch
Q 000746 702 -------------RGTVAYVPQISWIFNATLRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISG 767 (1303)
Q Consensus 702 -------------~~~iayv~Q~p~l~~~TireNI~~g~~-~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSG 767 (1303)
|++|+||||+|+||+|||||||++|++ +++++++++++.|+++++++.+|+|++|.|||+|.+|||
T Consensus 409 ~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSG 488 (588)
T PRK11174 409 NGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSV 488 (588)
T ss_pred CCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCH
Confidence 347999999999999999999999975 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHH
Q 000746 768 GQKQRVSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFE 824 (1303)
Q Consensus 768 GQkQRiaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~ 824 (1303)
||||||+||||+++ +.+.+..+++|+|+||||++.++.||+|++|++|+++++|+|+
T Consensus 489 GQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~~~ 568 (588)
T PRK11174 489 GQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYA 568 (588)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEeecCCHH
Confidence 99999999999653 3455566899999999999999999999999999999999999
Q ss_pred HHHhcchHHHHHHHHh
Q 000746 825 ELSKHGRLFQKLMENA 840 (1303)
Q Consensus 825 ~l~~~~~~~~~l~~~~ 840 (1303)
|++++++.|+++++.+
T Consensus 569 eL~~~~~~y~~l~~~q 584 (588)
T PRK11174 569 ELSQAGGLFATLLAHR 584 (588)
T ss_pred HHHhcchHHHHHHHHh
Confidence 9999999999987643
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-62 Score=624.87 Aligned_cols=519 Identities=19% Similarity=0.254 Sum_probs=400.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 317 LLRALNNSFGGRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPAWIGYIYAFLIFVGVSFGVLTEAQYFQNVWRVGF 396 (1303)
Q Consensus 317 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (1303)
+++..++.+++.++...++.++..++.++.|++++.++|.+.........+.+++.+.+..++..+......+...+.+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (686)
T TIGR03797 126 LLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDADRSLLVQIALALLAAAVGAAAFQLAQSLAVLRLET 205 (686)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556777788888889999999999999999999987543221111112222222222222222111223446788
Q ss_pred HHHHHHHHHHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 397 RLRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQ-LHG-LWSAPFRITLSMVLLYQQLGVASLLGSL 474 (1303)
Q Consensus 397 ~lr~~L~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~-~~~-~~~~~~~i~~~~~~l~~~lg~~~l~~~~ 474 (1303)
++...++..+|+|.++++...+++.++|+++++++ |++.+++.+.. +.. +...++ +++++++++..-++.+++.++
T Consensus 206 ~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~l~li~l~ 283 (686)
T TIGR03797 206 RMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIF-ALLNLGLMFYYSWKLALVAVA 283 (686)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999998888999999999996 78888876432 222 333333 333344444333444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 475 MLVLMVPLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSF 554 (1303)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~ 554 (1303)
++++.+.+..++.++.++..++.++..+++.+.+.|.++|+++||.+|.|+.+.+++++..++..+...+......+...
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (686)
T TIGR03797 284 LALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTV 363 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444566677778888888888899999999999999999999999999999988777766665555554444433
Q ss_pred HHHHHhHH--hHHhhhhhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 000746 555 ILNSIPVV--VTVVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILMPNP 632 (1303)
Q Consensus 555 ~~~~~~~~--~~~~~f~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~ 632 (1303)
+......+ +.++.+|++.+..|.++.|.+++...++..+..|+..++..+..+.++..+++|+.++++.+++......
T Consensus 364 ~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~ 443 (686)
T TIGR03797 364 FNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEAKT 443 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcC
Confidence 33332222 2345667788888999999999999999999999999999999999999999999999976543221111
Q ss_pred CCCCCCCcEEEEeeEEEeCC-CCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-----------
Q 000746 633 PLEPELPAVSIKNGNFSWDS-KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----------- 700 (1303)
Q Consensus 633 ~~~~~~~~i~~~~~~f~~~~-~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----------- 700 (1303)
......+.|+++|++|+|++ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.+..
T Consensus 444 ~~~~~~~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~ 523 (686)
T TIGR03797 444 DPGKLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQ 523 (686)
T ss_pred CCCCCCceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHH
Confidence 11112346999999999964 457999999999999999999999999999999999999999985321
Q ss_pred -EcCeEEEEccCcccccccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHH
Q 000746 701 -IRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAV 779 (1303)
Q Consensus 701 -~~~~iayv~Q~p~l~~~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl 779 (1303)
+|++|+||||+|++|+|||||||.+|++.++++++++++.|+++++++.+|+|++|.+||+|.+|||||||||+||||+
T Consensus 524 ~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAl 603 (686)
T TIGR03797 524 AVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARAL 603 (686)
T ss_pred HHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHH
Confidence 3468999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred HHH-----------------------HHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhcchHHHHH
Q 000746 780 FNS-----------------------CIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKL 836 (1303)
Q Consensus 780 ~~~-----------------------~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~~~~~~l 836 (1303)
+++ .+++. ++|+|+||||++.++.||+|++|++|+|+++|+|+|++++++.|+++
T Consensus 604 l~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~~~~y~~l 681 (686)
T TIGR03797 604 VRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAREGLFAQL 681 (686)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhCCcHHHHH
Confidence 531 22222 68999999999999999999999999999999999999999999988
Q ss_pred HHH
Q 000746 837 MEN 839 (1303)
Q Consensus 837 ~~~ 839 (1303)
++.
T Consensus 682 ~~~ 684 (686)
T TIGR03797 682 ARR 684 (686)
T ss_pred HHh
Confidence 753
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-61 Score=615.30 Aligned_cols=512 Identities=18% Similarity=0.246 Sum_probs=389.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 323 NSFGGRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDP-AWIGYIYAFLIFVGVSFGVLTEAQYFQNVWRVGFRLRST 401 (1303)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~ 401 (1303)
+..++.+....++.++..++..+.|++++.++|.+..... ........+ +.+..+...++.........+.+.++...
T Consensus 157 ~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 235 (711)
T TIGR00958 157 GRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFF-MCLLSIASSVSAGLRGGSFNYTMARINLR 235 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455567777788888999999999999999998864322 111111111 11111111111111111123456677778
Q ss_pred HHHHHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 402 LVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQIS-QQLHGLWSAPFRITLSMVLLYQQLGVASLLGSLMLVLMV 480 (1303)
Q Consensus 402 L~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~-~~~~~~~~~~~~i~~~~~~l~~~lg~~~l~~~~~~~~~~ 480 (1303)
++..+|++.++.+...+++.++|+++|++++|++.+++.+ ..+..++...+.+++++++++..-+..+++.++.+++..
T Consensus 236 lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l~~~~l~~ 315 (711)
T TIGR00958 236 IREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVF 315 (711)
T ss_pred HHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 8888999999999888888999999999999999998754 345555555555555555444333333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000746 481 PLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSIP 560 (1303)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~ 560 (1303)
.+..++.++.++..++.++..++..+.+.|.++|+++||.|++|+.+.+++++..++..+..++................
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (711)
T TIGR00958 316 LAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLG 395 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777777888888888999999999999999999999999888887777655544444333332222222211
Q ss_pred --HHhHHhhhhhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC-CCCCC
Q 000746 561 --VVVTVVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILMPNP-PLEPE 637 (1303)
Q Consensus 561 --~~~~~~~f~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~-~~~~~ 637 (1303)
..+.++.+|.+.+..|.+++|.+++.+.+...+..|+..++..+..+.++.++.+|+.++++.+++...+.. ...+.
T Consensus 396 ~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~ 475 (711)
T TIGR00958 396 MLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGTLAPLNL 475 (711)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Confidence 123345667788888999999999999999999999999999999999999999999999976543221111 11122
Q ss_pred CCcEEEEeeEEEeCCC--CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE-------------c
Q 000746 638 LPAVSIKNGNFSWDSK--SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI-------------R 702 (1303)
Q Consensus 638 ~~~i~~~~~~f~~~~~--~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~-------------~ 702 (1303)
.+.|+++|++|+|+++ +++|+|+||+|+|||+++|+||||||||||+++|+|+++|++|. +.+ +
T Consensus 476 ~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~-I~idg~~i~~~~~~~lr 554 (711)
T TIGR00958 476 EGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQ-VLLDGVPLVQYDHHYLH 554 (711)
T ss_pred CCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCE-EEECCEEHHhcCHHHHH
Confidence 3569999999999753 47999999999999999999999999999999999999999874 433 4
Q ss_pred CeEEEEccCcccccccHHHHHccCCC-CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH
Q 000746 703 GTVAYVPQISWIFNATLRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN 781 (1303)
Q Consensus 703 ~~iayv~Q~p~l~~~TireNI~~g~~-~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~ 781 (1303)
++|+||||+|++|++||||||.+|.+ .++++++++++.++++++++.+|+|+||.+||+|.+|||||||||+||||+++
T Consensus 555 ~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~ 634 (711)
T TIGR00958 555 RQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVR 634 (711)
T ss_pred hhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhc
Confidence 57999999999999999999999975 68899999999999999999999999999999999999999999999999754
Q ss_pred H-------------------HHhH--hcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhcchHHHHH
Q 000746 782 S-------------------CIKE--ELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKL 836 (1303)
Q Consensus 782 ~-------------------~i~~--~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~~~~~~l 836 (1303)
+ .+.+ ..+++|+|+||||++.++.||+|++|++|+|+++|+|+||+++++.|+++
T Consensus 635 ~p~ILILDEpTSaLD~~te~~i~~~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~~~~y~~l 710 (711)
T TIGR00958 635 KPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGCYKHL 710 (711)
T ss_pred CCCEEEEEccccccCHHHHHHHHHhhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhCCCchHhc
Confidence 2 2222 23689999999999999999999999999999999999999988888765
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-61 Score=617.76 Aligned_cols=517 Identities=20% Similarity=0.250 Sum_probs=399.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 320 ALNNSFGGRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPAWIGYIYAFLIFVGVSFGVLTEAQYFQNVWRVGFRLR 399 (1303)
Q Consensus 320 ~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 399 (1303)
..++.+++.++..++..++..++.++.|++++.++|.+.........+.+++.+++..++..+......+...+.+.++.
T Consensus 147 ~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (710)
T TIGR03796 147 RRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGRQDWLRPLLLGMGLTALLQGVLTWLQLYYLRRLQIKLA 226 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666677777888888899999999999999976543222111122222222222222222111223456788899
Q ss_pred HHHHHHHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 400 STLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQ-QLHGLWSAPFRITLSMVLLYQQLGVASLLGSLMLVL 478 (1303)
Q Consensus 400 ~~L~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~-~~~~~~~~~~~i~~~~~~l~~~lg~~~l~~~~~~~~ 478 (1303)
..++..+|+|.++++...+++.++|+++++++.| +.+.+++. .+..++...+.+++.+++++..-++.+++.++.+++
T Consensus 227 ~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~ 305 (710)
T TIGR03796 227 VGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIAFAAI 305 (710)
T ss_pred HHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888899999999999888 67877543 334444444444444444444334444443333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 479 MVPLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNS 558 (1303)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~ 558 (1303)
.+.+..++.++.++..++.++..+++.+.+.|.++|+++||.+|+|+.+.+++++..+++.+...+......+...+...
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (710)
T TIGR03796 306 NVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTL 385 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444566677777788888888899999999999999999999999999999988887777666555544443333332
Q ss_pred HhH--HhHHhhhhhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC-----
Q 000746 559 IPV--VVTVVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILMPN----- 631 (1303)
Q Consensus 559 ~~~--~~~~~~f~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~----- 631 (1303)
... .+.++++|++.+..|.++.|.+++...++..+..|+..+...+..+.++..+++|+.++++.+++.....
T Consensus 386 i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~ 465 (710)
T TIGR03796 386 LTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPA 465 (710)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccc
Confidence 222 2345667888888999999999999999999999999999999999999999999999997654322111
Q ss_pred --CCC-CCCCCcEEEEeeEEEeCCC-CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-------
Q 000746 632 --PPL-EPELPAVSIKNGNFSWDSK-SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------- 700 (1303)
Q Consensus 632 --~~~-~~~~~~i~~~~~~f~~~~~-~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------- 700 (1303)
... ....+.|+++|++|+|++. +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.+..
T Consensus 466 ~~~~~~~~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~ 545 (710)
T TIGR03796 466 AGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREE 545 (710)
T ss_pred cccccCCCCCCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHH
Confidence 000 1123469999999999853 57999999999999999999999999999999999999999975322
Q ss_pred -----EcCeEEEEccCcccccccHHHHHccCCC-CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHH
Q 000746 701 -----IRGTVAYVPQISWIFNATLRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVS 774 (1303)
Q Consensus 701 -----~~~~iayv~Q~p~l~~~TireNI~~g~~-~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRia 774 (1303)
+|++|+||||+|++|+|||||||.++++ .++++++++++.++++++++.+|+|++|.+||+|.+|||||||||+
T Consensus 546 ~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRia 625 (710)
T TIGR03796 546 IPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLE 625 (710)
T ss_pred CCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHH
Confidence 3568999999999999999999998874 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-------------------HHhHhc--CCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhcchHH
Q 000746 775 MARAVFNS-------------------CIKEEL--RGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLF 833 (1303)
Q Consensus 775 LARAl~~~-------------------~i~~~~--~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~~~~ 833 (1303)
||||++++ .+.+.+ .++|+|+||||++.++.||+|++|++|+|+++|+|+|++++++.|
T Consensus 626 LARall~~p~iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~~~~~y 705 (710)
T TIGR03796 626 IARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAVGGAY 705 (710)
T ss_pred HHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHHcCCcH
Confidence 99997642 111111 589999999999999999999999999999999999999999888
Q ss_pred HHHH
Q 000746 834 QKLM 837 (1303)
Q Consensus 834 ~~l~ 837 (1303)
++++
T Consensus 706 ~~l~ 709 (710)
T TIGR03796 706 ARLI 709 (710)
T ss_pred HHHh
Confidence 8875
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-61 Score=615.29 Aligned_cols=516 Identities=22% Similarity=0.303 Sum_probs=392.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 321 LNNSFGGRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPAWIGYIYAFLIFVGVSFGVLTEAQYFQNVWRVGFRLRS 400 (1303)
Q Consensus 321 l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 400 (1303)
..+.+++.++...+..++..++.++.|++++.++|.+..+......+.+++.+++..++..+......+...+.+.++..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (708)
T TIGR01193 150 LITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMMGTLGIISIGLIIAYIIQQILSYIQIFLLNVLGQRLSI 229 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777778888889999999999999999875433221111122222222222222221111223467788888
Q ss_pred HHHHHHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 401 TLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQ-QLHGLWSAPFRITLSMVLLYQQLGVASLLGSLMLVLM 479 (1303)
Q Consensus 401 ~L~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~-~~~~~~~~~~~i~~~~~~l~~~lg~~~l~~~~~~~~~ 479 (1303)
.++..+|+|.++++...+++.++|+++++++ |++.+.+... .....+...+.+++.+++++..-+..+++.++.+++.
T Consensus 230 ~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~ 308 (708)
T TIGR01193 230 DIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLLSLLSIPVY 308 (708)
T ss_pred HHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 9999999999999999888999999999997 8998887543 2222222222233333333332233333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 480 VPLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSI 559 (1303)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~ 559 (1303)
+.+..++.++.++..++.++..+++.+.+.|.++|+++||.+|+|+.+.+++++..++..+...+..........+....
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (708)
T TIGR01193 309 AVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAVT 388 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345666777888888888899999999999999999999999999999988776665555444433333322222222
Q ss_pred h--HHhHHhhhhhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CCCC
Q 000746 560 P--VVVTVVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILMPN--PPLE 635 (1303)
Q Consensus 560 ~--~~~~~~~f~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~--~~~~ 635 (1303)
. ..+.++++|++.+..|.+|+|.+++...+...+..|+..+...+..+.+++++.+|+.++++.+++..... .+..
T Consensus 389 ~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~ 468 (708)
T TIGR01193 389 KLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKRTELN 468 (708)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccCCC
Confidence 1 12345667888888999999999999999999999999999999999999999999999997654322111 1111
Q ss_pred CCCCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------EcC
Q 000746 636 PELPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------IRG 703 (1303)
Q Consensus 636 ~~~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------~~~ 703 (1303)
...+.|+++|++|+|++++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.+.. +|+
T Consensus 469 ~~~~~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~ 548 (708)
T TIGR01193 469 NLNGDIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQ 548 (708)
T ss_pred CCCCcEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHH
Confidence 22357999999999986668999999999999999999999999999999999999999974321 245
Q ss_pred eEEEEccCcccccccHHHHHccCC--CCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH
Q 000746 704 TVAYVPQISWIFNATLRKNILFGS--EFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN 781 (1303)
Q Consensus 704 ~iayv~Q~p~l~~~TireNI~~g~--~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~ 781 (1303)
+|+||||+|++|+|||||||.+|. +.++++++++++.++++++++.+|+|++|.|||+|.+|||||||||+||||+++
T Consensus 549 ~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~ 628 (708)
T TIGR01193 549 FINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLT 628 (708)
T ss_pred heEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhh
Confidence 799999999999999999999983 478999999999999999999999999999999999999999999999999653
Q ss_pred -----------------------HHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhcchHHHHHHH
Q 000746 782 -----------------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLME 838 (1303)
Q Consensus 782 -----------------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~ 838 (1303)
+.+.+ ++++|+|+||||++.+..||+|++|++|+++++|+|+|++++++.|+++++
T Consensus 629 ~p~iliLDE~Ts~LD~~te~~i~~~L~~-~~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~~~~~y~~l~~ 707 (708)
T TIGR01193 629 DSKVLILDESTSNLDTITEKKIVNNLLN-LQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDRNGFYASLIH 707 (708)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHH-hcCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHhcCCcHHHHhh
Confidence 23333 368999999999999999999999999999999999999998899988764
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-61 Score=597.11 Aligned_cols=511 Identities=20% Similarity=0.304 Sum_probs=388.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc--h-HHHHHH-HHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 000746 323 NSFGGRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPA--W-IGYIYA-FLIFVGVSFGVL-TEAQYFQNVWRVGFR 397 (1303)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~--~-~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 397 (1303)
+..|+.++.+.+..++.+...++..+++..+++.+...++. . ....++ +.+.+++.-... ..++|++. .++.+
T Consensus 660 ~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~~q~~~f~--~~ge~ 737 (1228)
T KOG0055|consen 660 KPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNFLQHYFFG--IAGEK 737 (1228)
T ss_pred cchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 33567778888889999999988889999999877643322 1 111122 222222221111 22233332 45566
Q ss_pred HHHHHHHHHHHHHHcCCccccc--CCChHHHHHHHHHHHHHHHHHHH-HHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 000746 398 LRSTLVAAIFRKTLRLTHEARK--GFPSGKVTNMITTDANALQQISQ-QLHGLW----SAPFRITLSMVLLYQQLGVASL 470 (1303)
Q Consensus 398 lr~~L~~~i~~k~l~l~~~~~~--~~~~g~i~nl~s~Dv~~i~~~~~-~~~~~~----~~~~~i~~~~~~l~~~lg~~~l 470 (1303)
+-..++...|++.++.+..+++ +++ |.+.+|+.+|...++.... .+..++ .....+++++++-|+ +++.
T Consensus 738 Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W~-lalv-- 813 (1228)
T KOG0055|consen 738 LTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGWR-LALV-- 813 (1228)
T ss_pred HHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--
Confidence 6666666777777776665543 345 9999999999999887543 233333 223334444444443 3332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 471 LGSLMLVLMVPLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSA 550 (1303)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~ 550 (1303)
++.+..++........+.+....++..+..++..+...|.+.+||||+.++.|+++.+.+.+..++-.+...+...+.+
T Consensus 814 -~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~~i~g 892 (1228)
T KOG0055|consen 814 -VLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRGLISG 892 (1228)
T ss_pred -HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233333333334445666777778888889999999999999999999999999999988766665555555555555
Q ss_pred HHHHHHHHHhHH--hHHhhhhhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 000746 551 FNSFILNSIPVV--VTVVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERIL 628 (1303)
Q Consensus 551 ~~~~~~~~~~~~--~~~~~f~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~ 628 (1303)
+...+.++...+ +...+||.+++..+.+++..+|.++..+..-...+.+.....+.+..++.|..+|.++++.++..+
T Consensus 893 l~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~ 972 (1228)
T KOG0055|consen 893 LGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDRKPTID 972 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcCCCCCC
Confidence 544444443333 345667888888999999999998887777777778888889999999999999999999766433
Q ss_pred CCCCC---CCCCCCcEEEEeeEEEeCCCC--CccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE---
Q 000746 629 MPNPP---LEPELPAVSIKNGNFSWDSKS--PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV--- 700 (1303)
Q Consensus 629 ~~~~~---~~~~~~~i~~~~~~f~~~~~~--~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~--- 700 (1303)
.+++. .++-.+.|+++||+|+||.++ ++|+|+||+|++|+.+|+||||||||||.+.+|.++|+|++|.+..
T Consensus 973 ~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~ 1052 (1228)
T KOG0055|consen 973 PDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGV 1052 (1228)
T ss_pred CCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCc
Confidence 22111 112345799999999999765 7999999999999999999999999999999999999999975421
Q ss_pred ---------EcCeEEEEccCcccccccHHHHHccCC-CCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHH
Q 000746 701 ---------IRGTVAYVPQISWIFNATLRKNILFGS-EFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQK 770 (1303)
Q Consensus 701 ---------~~~~iayv~Q~p~l~~~TireNI~~g~-~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQk 770 (1303)
+|++||.|+|+|.||++||||||++|. ..+++++.++++.++.+++|..||+|+||.|||+|.+||||||
T Consensus 1053 dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQK 1132 (1228)
T KOG0055|consen 1053 DIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQK 1132 (1228)
T ss_pred ccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHH
Confidence 467899999999999999999999994 4699999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-----------------------HHHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHH
Q 000746 771 QRVSMARAVF-----------------------NSCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELS 827 (1303)
Q Consensus 771 QRiaLARAl~-----------------------~~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~ 827 (1303)
||||||||++ ++++++...|+|+|+|+||++++++||.|+|+++|+|+|+|+|++|+
T Consensus 1133 QRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~GtH~~L~ 1212 (1228)
T KOG0055|consen 1133 QRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQGTHDELL 1212 (1228)
T ss_pred HHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEecccHHHHH
Confidence 9999999954 45677777899999999999999999999999999999999999999
Q ss_pred hcchHHHHHHHHh
Q 000746 828 KHGRLFQKLMENA 840 (1303)
Q Consensus 828 ~~~~~~~~l~~~~ 840 (1303)
+.+|.|.+|++.+
T Consensus 1213 ~~~G~Y~~Lv~~q 1225 (1228)
T KOG0055|consen 1213 AKRGIYFRLVQLQ 1225 (1228)
T ss_pred hCCCchHHHhhhc
Confidence 9999999998654
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-60 Score=610.67 Aligned_cols=509 Identities=23% Similarity=0.334 Sum_probs=394.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 318 LRALNNSFGGRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPAWIGYIYAFLIFVGVSFGVLTEAQYFQNVWRVGFR 397 (1303)
Q Consensus 318 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (1303)
++...+.+++.+....++.++..++.++.|++++.++|.+.........+.+++.+++..++..+......+...+.+.+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (694)
T TIGR03375 138 FWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQAFETLWVLAIGVALAIVFDFVLKTLRSYFLDVAGKK 217 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445667777777888888899999999999999999875332221111122222222222222211111223467888
Q ss_pred HHHHHHHHHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 398 LRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQ-LH-GLWSAPFRITLSMVLLYQQLGVASLLGSLM 475 (1303)
Q Consensus 398 lr~~L~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~-~~-~~~~~~~~i~~~~~~l~~~lg~~~l~~~~~ 475 (1303)
+...++..+|+|.++++... .+.++|++++++ +|++.+++.+.. +. .+...++.+ +.+++++..-+..+++.++.
T Consensus 218 ~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~l~li~l~~ 294 (694)
T TIGR03375 218 ADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFAL-LFLLVIAIIGGPLVWVPLVA 294 (694)
T ss_pred HHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHH
Confidence 99999999999999999876 677899999998 799999986532 22 233333333 33333333334444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 476 LVLMVPLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFI 555 (1303)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~ 555 (1303)
+++.+.+..++.++.++..++..+..+++.+.+.|.++|+++||.+++|+.+.+++++..++..+...+..........+
T Consensus 295 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (694)
T TIGR03375 295 IPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNF 374 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445667778888888889999999999999999999999999999999999988887776666655555444333
Q ss_pred HHHHhH--HhHHhhhhhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC-
Q 000746 556 LNSIPV--VVTVVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILMPNP- 632 (1303)
Q Consensus 556 ~~~~~~--~~~~~~f~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~- 632 (1303)
...... .+.++++|++.+..|.+++|.+++.+.++..+..|+..++..+..+.+++++.+|+.++++.+++......
T Consensus 375 ~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~ 454 (694)
T TIGR03375 375 AQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGTRF 454 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCC
Confidence 332222 23356678888889999999999999999999999999999999999999999999999987653221111
Q ss_pred -CCCCCCCcEEEEeeEEEeCCC-CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----------
Q 000746 633 -PLEPELPAVSIKNGNFSWDSK-SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV---------- 700 (1303)
Q Consensus 633 -~~~~~~~~i~~~~~~f~~~~~-~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~---------- 700 (1303)
+.....+.|+++|++|+|+++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.+..
T Consensus 455 ~~~~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~ 534 (694)
T TIGR03375 455 LHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDP 534 (694)
T ss_pred CCCCCccceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCH
Confidence 111223569999999999753 47999999999999999999999999999999999999999974321
Q ss_pred --EcCeEEEEccCcccccccHHHHHccCCC-CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHH
Q 000746 701 --IRGTVAYVPQISWIFNATLRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMAR 777 (1303)
Q Consensus 701 --~~~~iayv~Q~p~l~~~TireNI~~g~~-~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLAR 777 (1303)
+|++|+||||+|++|+|||+|||.++++ .++++++++++.++++++++.+|+|++|.+||+|.+|||||||||+|||
T Consensus 535 ~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalAR 614 (694)
T TIGR03375 535 ADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALAR 614 (694)
T ss_pred HHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHH
Confidence 2458999999999999999999999986 8999999999999999999999999999999999999999999999999
Q ss_pred HHHH-----------------------HHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhc
Q 000746 778 AVFN-----------------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 778 Al~~-----------------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
|+++ +.+.+..+++|+|+||||+++++.||+|++|++|+++|+|+|+||+++
T Consensus 615 all~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 615 ALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 9653 345555678999999999999999999999999999999999999753
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-60 Score=596.88 Aligned_cols=519 Identities=20% Similarity=0.236 Sum_probs=393.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 321 LNNSFGGRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPAWIGYIYAFLIFVGVSFGVLTEAQYFQNVWRVGFRLRS 400 (1303)
Q Consensus 321 l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 400 (1303)
.++.+++.++...+..++..++..+.|++++.+++.+..+........+++.+++..++..+......+...+.+.++..
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 98 (582)
T PRK11176 19 TIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKADRSVLKWMPLVVIGLMILRGITSFISSYCISWVSGKVVM 98 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666777777777888999999998765432211111111111111111111111111123456777888
Q ss_pred HHHHHHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 401 TLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQIS-QQLHGLWSAPFRITLSMVLLYQQLGVASLLGSLMLVLM 479 (1303)
Q Consensus 401 ~L~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~-~~~~~~~~~~~~i~~~~~~l~~~lg~~~l~~~~~~~~~ 479 (1303)
.++..+|++.++++.....+.+.|++++++++|++.+.+.. ..+..++..++.+++.+++++..-++.+++.++++++.
T Consensus 99 ~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~l~ 178 (582)
T PRK11176 99 TMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIVIAPIV 178 (582)
T ss_pred HHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999998889999999999999999998754 34455555555555555544443333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 480 VPLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSI 559 (1303)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~ 559 (1303)
+.+..+..++.++..++.++..++..+...|.++|+++||.++.|+.+.+++++..++..+...+......+...+....
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (582)
T PRK11176 179 SIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQLI 258 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345566777777788888888899999999999999999999999999998777765555444444433333322222
Q ss_pred h--HHhHHhhhhhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 000746 560 P--VVVTVVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILMPNPPLEPE 637 (1303)
Q Consensus 560 ~--~~~~~~~f~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~ 637 (1303)
. ..+.++.++.+.+..|.+++|.+.+.+.++..+..|+..+...+..+.+++.+++|+.++++.+++.........+.
T Consensus 259 ~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~ 338 (582)
T PRK11176 259 ASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEGKRVIERA 338 (582)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCcCCCCC
Confidence 2 12234556677777889999999888888888999999999999999999999999999987654321111111122
Q ss_pred CCcEEEEeeEEEeCCC-CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------EcCe
Q 000746 638 LPAVSIKNGNFSWDSK-SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------IRGT 704 (1303)
Q Consensus 638 ~~~i~~~~~~f~~~~~-~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------~~~~ 704 (1303)
.+.|+++|++|+|+++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.+.. +++.
T Consensus 339 ~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 418 (582)
T PRK11176 339 KGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQ 418 (582)
T ss_pred CCeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhh
Confidence 3469999999999764 57999999999999999999999999999999999999999874321 2457
Q ss_pred EEEEccCcccccccHHHHHccCCC--CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-
Q 000746 705 VAYVPQISWIFNATLRKNILFGSE--FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN- 781 (1303)
Q Consensus 705 iayv~Q~p~l~~~TireNI~~g~~--~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~- 781 (1303)
|+||||+|++|++||||||.+|++ +++++++++++.++++++++.+|+|++|.+||+|.+|||||||||+||||+++
T Consensus 419 i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~ 498 (582)
T PRK11176 419 VALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRD 498 (582)
T ss_pred ceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhC
Confidence 999999999999999999999863 78999999999999999999999999999999999999999999999999764
Q ss_pred ----------------------HHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhcchHHHHHHHH
Q 000746 782 ----------------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLMEN 839 (1303)
Q Consensus 782 ----------------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~~ 839 (1303)
+.+.+..+++|+|+||||++.++.||+|++|++|+++|.|+|++++++++.|+++++.
T Consensus 499 ~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~~~~y~~l~~~ 578 (582)
T PRK11176 499 SPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQNGVYAQLHKM 578 (582)
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhCCChHHHHHHH
Confidence 2344444789999999999999999999999999999999999999999999998764
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-59 Score=545.00 Aligned_cols=502 Identities=23% Similarity=0.352 Sum_probs=384.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 332 GGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPAWIGYIYAFLIFVGVSFGVLTEAQYFQNVWRVGFRLRSTLVAAIFRKTL 411 (1303)
Q Consensus 332 ~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~L~~~i~~k~l 411 (1303)
..++.++..+....+-.++...++.+-.+......+.+++.++++.++..+....--...++.+.++|..++..+++|..
T Consensus 5 ~~ll~~l~~i~~i~qa~llA~~l~~l~~~~~~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~ 84 (559)
T COG4988 5 SALLAVLSGIAIIAQAALLADILTKLIEGQLFQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLA 84 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666777777777777766554432111222333333333333333222334578899999999999999999
Q ss_pred cCCcccccCCChHHHHHHHHHHHHHHHHHHH-HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 000746 412 RLTHEARKGFPSGKVTNMITTDANALQQISQ-QLHGL---WSAPFRITLSMVLLYQQLGVASLLGSLMLVLMVPL-QTFI 486 (1303)
Q Consensus 412 ~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~-~~~~~---~~~~~~i~~~~~~l~~~lg~~~l~~~~~~~~~~~~-~~~~ 486 (1303)
++.+...++.++|++.++++..+|.++.++. +++.. ...|+.++++++.+.+..+...++...+ +|+ ...+
T Consensus 85 ~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~Pl----IPlfMilv 160 (559)
T COG4988 85 KLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPL----IPLFMILV 160 (559)
T ss_pred hCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHH
Confidence 9999888889999999999999999998653 33333 3445555555555555444333322222 222 2345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000746 487 ISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQS----IRDDELSWFRKAQFLSAFNSFILNSIPVV 562 (1303)
Q Consensus 487 ~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~----~r~~e~~~~~~~~~~~~~~~~~~~~~~~~ 562 (1303)
+.+.++..+++++....-.++.-|.++|+.|+|.|+..+...+++.+ .|+..++.+|-.........++.... +.
T Consensus 161 g~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~ls-iA 239 (559)
T COG4988 161 GLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLS-IA 239 (559)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 56677777888888888889999999999999999998887777754 45555555444433333444433322 22
Q ss_pred hHHhhhhhhhhhC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC-CCCCCC-
Q 000746 563 VTVVSFGTFTLLG-GDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILMPNPP-LEPELP- 639 (1303)
Q Consensus 563 ~~~~~f~~~~~~~-~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~-~~~~~~- 639 (1303)
..++.+ .+.+.+ |+++....+.++.+..-+..|++.+...++.-.++..+.+++..|++.+........+ .....+
T Consensus 240 lvAv~~-g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~ 318 (559)
T COG4988 240 LVAVYI-GFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPP 318 (559)
T ss_pred HHHHHH-HHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCC
Confidence 222333 344456 7999999999999999999999999999999999999999999999877653322211 112223
Q ss_pred -cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------EcCeEE
Q 000746 640 -AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------IRGTVA 706 (1303)
Q Consensus 640 -~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------~~~~ia 706 (1303)
.++.+|++|.|++++++++|+||++++|++++|||+||||||||+++|+|+++|++|.... ++++++
T Consensus 319 ~ei~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~ 398 (559)
T COG4988 319 IEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQIS 398 (559)
T ss_pred ceeeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHee
Confidence 3455599999998779999999999999999999999999999999999999999875321 457899
Q ss_pred EEccCcccccccHHHHHccCCC-CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHH-----
Q 000746 707 YVPQISWIFNATLRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF----- 780 (1303)
Q Consensus 707 yv~Q~p~l~~~TireNI~~g~~-~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~----- 780 (1303)
||||+|.||+|||||||+++++ .+++++.++++.++|.+.++. |+|+||.|||+|.+|||||+||++||||++
T Consensus 399 ~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l 477 (559)
T COG4988 399 WVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASL 477 (559)
T ss_pred eeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCE
Confidence 9999999999999999999997 679999999999999999999 999999999999999999999999999954
Q ss_pred ------------------HHHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhcchHHHHHHHHh
Q 000746 781 ------------------NSCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLMENA 840 (1303)
Q Consensus 781 ------------------~~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~ 840 (1303)
.+.+.+..+++|+++||||++.+..+|+|++||+|+++++|+|+++.++++.|++++.++
T Consensus 478 ~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~~~~y~~l~~~q 555 (559)
T COG4988 478 LLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQGLYANLLKQQ 555 (559)
T ss_pred EEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhcCcHHHHHHHHH
Confidence 345566778999999999999999999999999999999999999999999999998654
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-59 Score=587.10 Aligned_cols=512 Identities=26% Similarity=0.374 Sum_probs=386.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 325 FGGRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPAWIGYIY-AFLIFVGVSFGVLTEAQYFQNVWRVGFRLRSTLV 403 (1303)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~L~ 403 (1303)
++ .++.+.++.++..++....|.++..+++.+.........+.. .+.+++ +..+......+...+.+.++...++
T Consensus 13 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~lr 88 (567)
T COG1132 13 YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLADLGELLELLLLLLLLAL---LGGVLRALQSYLGSRLGQKIVADLR 88 (567)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55 677778888888999999999999999987611111111111 111111 1111111111122345578888899
Q ss_pred HHHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 404 AAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQLHGLWS-APFRITLSMVLLYQQLGVASLLGSLMLVLMVPL 482 (1303)
Q Consensus 404 ~~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~~~~~~-~~~~i~~~~~~l~~~lg~~~l~~~~~~~~~~~~ 482 (1303)
..+|+|.++++...+++.++|++++++++|++.++........... .++.++..+++++..-+..+++..+..+++...
T Consensus 89 ~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~ 168 (567)
T COG1132 89 RDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALV 168 (567)
T ss_pred HHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987655432222 344444333333322122222222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Q 000746 483 QTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSIP-- 560 (1303)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~-- 560 (1303)
..++.++.++..++..+..++..+.+.|.++|+++||.|+.|+...+++.+..++..+...+................
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (567)
T COG1132 169 LSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSL 248 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455567777777888889999999999999999999999988777766655544443332222222221111111
Q ss_pred HHhHHhhhhhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCc
Q 000746 561 VVVTVVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILMPNPPLEPELPA 640 (1303)
Q Consensus 561 ~~~~~~~f~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~ 640 (1303)
....++.++.+.+..+.++.|.+.+.+.+...+..|+..+...+..+..+..+.+|+.++++.++....+..+.....+.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~ 328 (567)
T COG1132 249 GTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDPLKDTIGS 328 (567)
T ss_pred HHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCCCCCCe
Confidence 12334556677777888999999999999999999999999999999999999999999998755322211112223456
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------EcCeEEEE
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------IRGTVAYV 708 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------~~~~iayv 708 (1303)
|+++|++|+|++++++|+|+||++++||++||||||||||||++++|+|+++|++|.+.. +|++|+||
T Consensus 329 I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V 408 (567)
T COG1132 329 IEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIV 408 (567)
T ss_pred EEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEE
Confidence 999999999997678999999999999999999999999999999999999999875432 35679999
Q ss_pred ccCcccccccHHHHHccCCC-CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH------
Q 000746 709 PQISWIFNATLRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN------ 781 (1303)
Q Consensus 709 ~Q~p~l~~~TireNI~~g~~-~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~------ 781 (1303)
||+|+||++||+|||.+|++ .++|+++++++.++++++++.+|+|+||.|||+|.+|||||||||+||||+++
T Consensus 409 ~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILI 488 (567)
T COG1132 409 SQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILI 488 (567)
T ss_pred cccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999998 69999999999999999999999999999999999999999999999999653
Q ss_pred -----------------HHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhcchHHHHHHHHh
Q 000746 782 -----------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLMENA 840 (1303)
Q Consensus 782 -----------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~ 840 (1303)
+.+.+..++||+++|+||++++..||+|++||+|+|+|.|+|+||++++|.|+++++.+
T Consensus 489 LDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~~g~y~~l~~~~ 564 (567)
T COG1132 489 LDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAKGGLYARLYQAQ 564 (567)
T ss_pred EeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHcCCHHHHHHHHh
Confidence 33444557899999999999999999999999999999999999999999999998754
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-59 Score=588.77 Aligned_cols=518 Identities=22% Similarity=0.283 Sum_probs=401.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 321 LNNSFGGRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPAWIGYIYAFLIFVGVSFGVLTEAQYFQNVWRVGFRLRS 400 (1303)
Q Consensus 321 l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 400 (1303)
+.+.+++.++.+.++.++..++....|++++.+++...........+.++.++.+..++..+......+...+.+.++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 87 (571)
T TIGR02203 8 YVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRDRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNKVVR 87 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888888899999999999999999998654433221111111111111111111111111123467778888
Q ss_pred HHHHHHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 401 TLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQ-QLHGLWSAPFRITLSMVLLYQQLGVASLLGSLMLVLM 479 (1303)
Q Consensus 401 ~L~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~-~~~~~~~~~~~i~~~~~~l~~~lg~~~l~~~~~~~~~ 479 (1303)
.++..+|++.++.+....++.+.|++.+++++|++.+.+... .+..++...+.+++++++++..-+..+++.++++++.
T Consensus 88 ~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~~l~ 167 (571)
T TIGR02203 88 DIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVL 167 (571)
T ss_pred HHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 888999999999998888889999999999999999998653 4445555555555555554444333334333333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 480 VPLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSI 559 (1303)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~ 559 (1303)
+.+..++.++.++..++..+..+++.+.+.|.++|+++||.++.|+.+.+++++..++..+...+..........+....
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (571)
T TIGR02203 168 SILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLI 247 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44446667778888888889999999999999999999999999999999998877776665555444444433333322
Q ss_pred hH--HhHHhhhhhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 000746 560 PV--VVTVVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILMPNPPLEPE 637 (1303)
Q Consensus 560 ~~--~~~~~~f~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~ 637 (1303)
.. .+.++.+|++.+..|.+++|.+++.+.++..+..|+..+...+..+.+++++.+|+.++++.+++......+..+.
T Consensus 248 ~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~ 327 (571)
T TIGR02203 248 ASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGTRAIERA 327 (571)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCC
Confidence 21 2234556777778899999999999999999999999999999999999999999999997654322111111122
Q ss_pred CCcEEEEeeEEEeCC-CCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE-------------cC
Q 000746 638 LPAVSIKNGNFSWDS-KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI-------------RG 703 (1303)
Q Consensus 638 ~~~i~~~~~~f~~~~-~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~-------------~~ 703 (1303)
.+.++++|++|+|++ ++++|+|+||++++||+++|+|+||||||||+++|+|+++|.+|. +.+ ++
T Consensus 328 ~~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~-I~i~g~~i~~~~~~~~~~ 406 (571)
T TIGR02203 328 RGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQ-ILLDGHDLADYTLASLRR 406 (571)
T ss_pred CCeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCe-EEECCEeHHhcCHHHHHh
Confidence 346999999999975 357999999999999999999999999999999999999999874 433 35
Q ss_pred eEEEEccCcccccccHHHHHccCC--CCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH
Q 000746 704 TVAYVPQISWIFNATLRKNILFGS--EFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN 781 (1303)
Q Consensus 704 ~iayv~Q~p~l~~~TireNI~~g~--~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~ 781 (1303)
+|+||||+|++|+|||||||.+++ +.++++++++++.|+++++++.+|+|+||.|||+|.+|||||||||+||||+++
T Consensus 407 ~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~ 486 (571)
T TIGR02203 407 QVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLK 486 (571)
T ss_pred hceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence 799999999999999999999996 489999999999999999999999999999999999999999999999999653
Q ss_pred -----------------------HHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhcchHHHHHHH
Q 000746 782 -----------------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLME 838 (1303)
Q Consensus 782 -----------------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~ 838 (1303)
+.+.+..+++|+|+||||++.++.||+|++|++|++++.|+|++++++++.|+++.+
T Consensus 487 ~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~~~~~~~~~~ 566 (571)
T TIGR02203 487 DAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARNGLYAQLHN 566 (571)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHcCCHHHHHHH
Confidence 234455578999999999999999999999999999999999999988888888765
Q ss_pred H
Q 000746 839 N 839 (1303)
Q Consensus 839 ~ 839 (1303)
.
T Consensus 567 ~ 567 (571)
T TIGR02203 567 M 567 (571)
T ss_pred H
Confidence 3
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-59 Score=587.31 Aligned_cols=516 Identities=18% Similarity=0.234 Sum_probs=381.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc-chHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 321 LNNSFGGRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDP-AWIGYI-YAFLIFVGVSFGVLTEAQYFQNVWRVGFRL 398 (1303)
Q Consensus 321 l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 398 (1303)
+.+.+++.++...++.++..++..+.|+++..++|.+..... ...... +++++++..++..+..........+.+.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (592)
T PRK10790 17 YGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAVGV 96 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566667777788888889999999999999997643222 111111 111111111111111111111234667778
Q ss_pred HHHHHHHHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 399 RSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQ-LHGLWSAPFRITLSMVLLYQQLGVASLLGSLMLV 477 (1303)
Q Consensus 399 r~~L~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~-~~~~~~~~~~i~~~~~~l~~~lg~~~l~~~~~~~ 477 (1303)
...++..+|+|.++.+.....+.++|++++++++|++.+++.+.. +..++...+.+++.+.+++..-++..++.++++.
T Consensus 97 ~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~ 176 (592)
T PRK10790 97 VQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMIFP 176 (592)
T ss_pred HHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999998888899999999999999999986543 3334433333333333332222222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH--
Q 000746 478 LMVPLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFN-SF-- 554 (1303)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~-~~-- 554 (1303)
+.+.+.....++.++..++..+..++..+.+.|.++|+++||.|+.|+.+.+++.+..++..+...+........ ..
T Consensus 177 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (592)
T PRK10790 177 AVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLL 256 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222344455566666666777788889999999999999999999999998877665444322222222111 11
Q ss_pred -HHHHHhHHhHHhhhhhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 000746 555 -ILNSIPVVVTVVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILMPNPP 633 (1303)
Q Consensus 555 -~~~~~~~~~~~~~f~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~ 633 (1303)
+......++.++. +.+ ...|.++.+.+++.+.++..+..|+..+...+..+.++..+.+|+.++++.+++.... ..
T Consensus 257 ~~~~~~~~~~~~~~-~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~-~~ 333 (592)
T PRK10790 257 SLFSALILCGLLML-FGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGN-DD 333 (592)
T ss_pred HHHHHHHHHHHHHH-HHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCC-Cc
Confidence 1111111111122 223 3578899999999999999999999999999999999999999999998754322111 11
Q ss_pred CCCCCCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE------------
Q 000746 634 LEPELPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI------------ 701 (1303)
Q Consensus 634 ~~~~~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~------------ 701 (1303)
.....+.++++|++|+|++++++|+|+||++++||+++|+|+||||||||+++|+|+++|.+|. +.+
T Consensus 334 ~~~~~~~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~-I~idg~~i~~~~~~~ 412 (592)
T PRK10790 334 RPLQSGRIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGE-IRLDGRPLSSLSHSV 412 (592)
T ss_pred cCCCCCeEEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCce-EEECCEEhhhCCHHH
Confidence 1122356999999999986568999999999999999999999999999999999999999874 333
Q ss_pred -cCeEEEEccCcccccccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHH
Q 000746 702 -RGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF 780 (1303)
Q Consensus 702 -~~~iayv~Q~p~l~~~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~ 780 (1303)
+++|+||||+|++|++||||||.+|++.++++++++++.++++++++.+|+|+||.+||+|.+|||||||||+||||++
T Consensus 413 l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl 492 (592)
T PRK10790 413 LRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLV 492 (592)
T ss_pred HHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999999989999999999999999999999999999999999999999999999999975
Q ss_pred H-----------------------HHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhcchHHHHHH
Q 000746 781 N-----------------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLM 837 (1303)
Q Consensus 781 ~-----------------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~ 837 (1303)
+ +.+++..+++|+|+||||++.++.||+|++|++|++++.|+|+|++++++.|++++
T Consensus 493 ~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~~~~y~~l~ 572 (592)
T PRK10790 493 QTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQGRYWQMY 572 (592)
T ss_pred hCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCHHHHHH
Confidence 4 23445557899999999999999999999999999999999999999999999988
Q ss_pred HHh
Q 000746 838 ENA 840 (1303)
Q Consensus 838 ~~~ 840 (1303)
+.+
T Consensus 573 ~~~ 575 (592)
T PRK10790 573 QLQ 575 (592)
T ss_pred HHH
Confidence 654
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-58 Score=578.96 Aligned_cols=514 Identities=20% Similarity=0.254 Sum_probs=383.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCc--chHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 321 LNNSFGGRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQ-RGDP--AWIGYI-YAFLIFVGVSFGVLTEAQYFQNVWRVGF 396 (1303)
Q Consensus 321 l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~-~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (1303)
+.+.+++.++.+.++.++..++..+.|.+++.+++... .+.. ...... .++.+.+..++..+......+...+.+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (574)
T PRK11160 10 LYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVSHDATF 89 (574)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777778888888888999999999999999653 2221 001111 1111111111111211111112346778
Q ss_pred HHHHHHHHHHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 000746 397 RLRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQ-QLHGLWSAPFRITLSMVLLY---QQLGVASLLG 472 (1303)
Q Consensus 397 ~lr~~L~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~-~~~~~~~~~~~i~~~~~~l~---~~lg~~~l~~ 472 (1303)
++...++..+|+|.++++....++.++|++++++++|++.++++.. .+..++...+.+++++++++ +.+++..+++
T Consensus 90 ~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~ 169 (574)
T PRK11160 90 RVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLALTLGGI 169 (574)
T ss_pred HHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999888899999999999999999998654 34444444444444443333 2333322222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 473 SLMLVLMVPLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFN 552 (1303)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~ 552 (1303)
+.++.+++ ..++.++.++..++..+..++..+.+.|.++|+++||.|+.|+.+.+++++..++..+...+........
T Consensus 170 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (574)
T PRK11160 170 LLLLLLLL--PLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGLS 247 (574)
T ss_pred HHHHHHHH--HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21111122 2445566677777788888888999999999999999999999999999887776655555544444433
Q ss_pred HHHHHHHhH--HhHHhhhhhhhhhCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 000746 553 SFILNSIPV--VVTVVSFGTFTLLGGDLTPARAFTSLSLFAV-LRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILM 629 (1303)
Q Consensus 553 ~~~~~~~~~--~~~~~~f~~~~~~~~~l~~~~~f~~l~l~~~-l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~ 629 (1303)
..+...... .+.++.+|++. ..+.++.|..++.+.+... ...|+..++..+..+.++..+.+|+.++++.+++...
T Consensus 248 ~~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~ 326 (574)
T PRK11160 248 QALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTF 326 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 332222221 12334556665 4778899987776655444 3458888889999999999999999999986543211
Q ss_pred C-CCCCCCCCCcEEEEeeEEEeCCC-CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-------
Q 000746 630 P-NPPLEPELPAVSIKNGNFSWDSK-SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------- 700 (1303)
Q Consensus 630 ~-~~~~~~~~~~i~~~~~~f~~~~~-~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------- 700 (1303)
+ .....+..+.++++|++|+|+++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+..
T Consensus 327 ~~~~~~~~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~ 406 (574)
T PRK11160 327 PTTSTAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIAD 406 (574)
T ss_pred CcccCCCCCCCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhh
Confidence 1 11111223579999999999764 47999999999999999999999999999999999999999975321
Q ss_pred -----EcCeEEEEccCcccccccHHHHHccCCC-CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHH
Q 000746 701 -----IRGTVAYVPQISWIFNATLRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVS 774 (1303)
Q Consensus 701 -----~~~~iayv~Q~p~l~~~TireNI~~g~~-~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRia 774 (1303)
++++|+||||+|++|++||+|||.++++ .++++++++++.++++++++. |+|+||.+||+|.+|||||||||+
T Consensus 407 ~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrqRia 485 (574)
T PRK11160 407 YSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLG 485 (574)
T ss_pred CCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHHHHHHH
Confidence 2457999999999999999999999975 789999999999999999999 999999999999999999999999
Q ss_pred HHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhcch
Q 000746 775 MARAVFN-----------------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGR 831 (1303)
Q Consensus 775 LARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~~ 831 (1303)
||||+++ +.+.+..+++|+|+||||++.++.||+|++|++|++++.|+|+|++++++
T Consensus 486 lARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~g 565 (574)
T PRK11160 486 IARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQQG 565 (574)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHhcCc
Confidence 9999653 34455557899999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 000746 832 LFQKLME 838 (1303)
Q Consensus 832 ~~~~l~~ 838 (1303)
.|+++++
T Consensus 566 ~y~~l~~ 572 (574)
T PRK11160 566 RYYQLKQ 572 (574)
T ss_pred HHHHHHh
Confidence 9998864
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-58 Score=578.98 Aligned_cols=515 Identities=20% Similarity=0.277 Sum_probs=386.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 322 NNSFGGRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPAWIGYIYAFLIFVGVSFGVLTEAQYFQNVWRVGFRLRST 401 (1303)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~ 401 (1303)
.+.++..++...++.++..++.++.|++++.++|.+..+.. .......++.++. +..+..........+...+++..
T Consensus 14 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 90 (588)
T PRK13657 14 LGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGKGD--IFPLLAAWAGFGL-FNIIAGVLVARHADRLAHRRRLA 90 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777888888889999999999999998765321 1111111111111 11111111111234566788888
Q ss_pred HHHHHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 402 LVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQ-QLHGLWSAPFRITLSMVLLYQQLGVASLLGSLMLVLMV 480 (1303)
Q Consensus 402 L~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~-~~~~~~~~~~~i~~~~~~l~~~lg~~~l~~~~~~~~~~ 480 (1303)
++..+|+|.++++.....+.+.|++++++++|++.+.+... .+..+....+..++.+++++..-++.+++.++++++..
T Consensus 91 l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l~~ 170 (588)
T PRK13657 91 VLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVLGIVYT 170 (588)
T ss_pred HHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999888899999999999999999876432 33333333333333332222222222222222222223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 000746 481 PLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSI- 559 (1303)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~- 559 (1303)
.+..++.++.++..++.++..++..+...|.++|+++||.|+.++.+.+++.+..++..+...+..........+....
T Consensus 171 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (588)
T PRK13657 171 LITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAAS 250 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666777777888888889999999999999999999999999888887766654444333222222222211111
Q ss_pred -hHHhHHhhhhhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC--CCCC
Q 000746 560 -PVVVTVVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILMPNP--PLEP 636 (1303)
Q Consensus 560 -~~~~~~~~f~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~--~~~~ 636 (1303)
...+.++.+|++.+..|.+++|.+++++.++..+..|+..+...+..+.++..+++|+.++++.+++...... +..+
T Consensus 251 ~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~ 330 (588)
T PRK13657 251 TITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPGAIDLGR 330 (588)
T ss_pred HHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCCcCC
Confidence 1223455677888889999999999999999999999999999999999999999999999875432111111 1111
Q ss_pred CCCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE-------------cC
Q 000746 637 ELPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI-------------RG 703 (1303)
Q Consensus 637 ~~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~-------------~~ 703 (1303)
..+.|+++|++|+|++++++|+|+|+++++||+++|+|+||||||||+++|+|+++|.+|. +.+ ++
T Consensus 331 ~~~~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~-I~i~g~~i~~~~~~~~r~ 409 (588)
T PRK13657 331 VKGAVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGR-ILIDGTDIRTVTRASLRR 409 (588)
T ss_pred CCCeEEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCE-EEECCEEhhhCCHHHHHh
Confidence 2246999999999986567999999999999999999999999999999999999999874 333 45
Q ss_pred eEEEEccCcccccccHHHHHccCCC-CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-
Q 000746 704 TVAYVPQISWIFNATLRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN- 781 (1303)
Q Consensus 704 ~iayv~Q~p~l~~~TireNI~~g~~-~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~- 781 (1303)
+|+||||+|++|+|||||||+++++ .++++.+++++.++++++++.+|+|+||.+||+|.+|||||||||+||||+++
T Consensus 410 ~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~ 489 (588)
T PRK13657 410 NIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKD 489 (588)
T ss_pred heEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 7999999999999999999999974 68899999999999999999999999999999999999999999999999653
Q ss_pred ----------------------HHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhcchHHHHHHHH
Q 000746 782 ----------------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLMEN 839 (1303)
Q Consensus 782 ----------------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~~ 839 (1303)
+.+.+..+++|+|+||||++.++.||+|++|++|+++++|+|+++++.++.|+++++.
T Consensus 490 ~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~~~~y~~l~~~ 569 (588)
T PRK13657 490 PPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVARGGRFAALLRA 569 (588)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHCCChHHHHHHH
Confidence 2344444789999999999999999999999999999999999999888999998865
Q ss_pred h
Q 000746 840 A 840 (1303)
Q Consensus 840 ~ 840 (1303)
+
T Consensus 570 ~ 570 (588)
T PRK13657 570 Q 570 (588)
T ss_pred h
Confidence 4
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-58 Score=589.20 Aligned_cols=519 Identities=21% Similarity=0.285 Sum_probs=396.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 320 ALNNSFGGRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPAWIGYIYAFLIFVGVSFGVLTEAQYFQNVWRVGFRLR 399 (1303)
Q Consensus 320 ~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 399 (1303)
...+.+++.+....+..++..++.++.|++++.++|.+...........+++.+++..++..+......+...+.+.++.
T Consensus 132 ~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 211 (694)
T TIGR01846 132 PAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHRGLSTLSVLALAMLAVAIFEPALGGLRTYLFAHLTSRID 211 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777788888889999999999999999987533221111112221122222222222111122346788889
Q ss_pred HHHHHHHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 400 STLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQ-QLHGLWSAPFRITLSMVLLYQQLGVASLLGSLMLVL 478 (1303)
Q Consensus 400 ~~L~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~-~~~~~~~~~~~i~~~~~~l~~~lg~~~l~~~~~~~~ 478 (1303)
..++..+|+|.++++...+++.++|++++++ +|++.+.+... .+...+...+.+++.+++++..-+..+++.++.+++
T Consensus 212 ~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~ 290 (694)
T TIGR01846 212 VELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGSLVC 290 (694)
T ss_pred HHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998999999999999 69999988643 333333222222223333333333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 479 MVPLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNS 558 (1303)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~ 558 (1303)
...+..++.++.++..++..+..+++.+.+.|.++|+++||.+|.|+.+.+++++..++..+...+..........+...
T Consensus 291 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (694)
T TIGR01846 291 YALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIEL 370 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334456666777777888888899999999999999999999999999999887776666555554444443333222
Q ss_pred HhH--HhHHhhhhhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC-CCC
Q 000746 559 IPV--VVTVVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILMPNP-PLE 635 (1303)
Q Consensus 559 ~~~--~~~~~~f~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~-~~~ 635 (1303)
... .+.++.+|++.+..|.+|.|.+++...+...+..|+..+...+..+.+++.+++|+.++++.+++...... +..
T Consensus 371 i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~ 450 (694)
T TIGR01846 371 IQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSAGLAALP 450 (694)
T ss_pred HHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCCCCCCC
Confidence 221 23346678888888999999999999999999999999999999999999999999999976543221111 111
Q ss_pred CCCCcEEEEeeEEEeCCC-CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------Ec
Q 000746 636 PELPAVSIKNGNFSWDSK-SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------IR 702 (1303)
Q Consensus 636 ~~~~~i~~~~~~f~~~~~-~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------~~ 702 (1303)
...+.|+++|++|+|+++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.+.. +|
T Consensus 451 ~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r 530 (694)
T TIGR01846 451 ELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLR 530 (694)
T ss_pred CCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHH
Confidence 123469999999999754 47999999999999999999999999999999999999999874321 24
Q ss_pred CeEEEEccCcccccccHHHHHccCCC-CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH
Q 000746 703 GTVAYVPQISWIFNATLRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN 781 (1303)
Q Consensus 703 ~~iayv~Q~p~l~~~TireNI~~g~~-~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~ 781 (1303)
++|+||||+|++|++||+|||.++++ .++++++++++.++++++++.+|+|++|.+||+|.+|||||||||+||||+++
T Consensus 531 ~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~ 610 (694)
T TIGR01846 531 RQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVG 610 (694)
T ss_pred HhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHh
Confidence 57999999999999999999999875 78999999999999999999999999999999999999999999999999653
Q ss_pred -----------------------HHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhcchHHHHHHH
Q 000746 782 -----------------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLME 838 (1303)
Q Consensus 782 -----------------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~ 838 (1303)
+.+.+..+++|+|+||||++.++.||+|++|++|+++++|+|++++++++.|+++++
T Consensus 611 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~~~~y~~l~~ 690 (694)
T TIGR01846 611 NPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQGLYARLWQ 690 (694)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHcCChHHHHHH
Confidence 234455578999999999999999999999999999999999999999999999875
Q ss_pred H
Q 000746 839 N 839 (1303)
Q Consensus 839 ~ 839 (1303)
.
T Consensus 691 ~ 691 (694)
T TIGR01846 691 Q 691 (694)
T ss_pred h
Confidence 3
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-57 Score=572.91 Aligned_cols=518 Identities=23% Similarity=0.340 Sum_probs=390.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 319 RALNNSFGGRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQ-RGDPAWIGYIYAFLIFVGVSFGVLTEAQYFQNVWRVGFR 397 (1303)
Q Consensus 319 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (1303)
+.+.+.+++.++...++.++..++..+.|++++.++|.+. .++........++ .++..++..+......+...+++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (576)
T TIGR02204 10 WPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDSSGLLNRYFAF-LLVVALVLALGTAARFYLVTWLGER 88 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566677777788888899999999999999999743 3221111111111 1111111111111122233467888
Q ss_pred HHHHHHHHHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 398 LRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQ-QLHGLWSAPFRITLSMVLLYQQLGVASLLGSLML 476 (1303)
Q Consensus 398 lr~~L~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~-~~~~~~~~~~~i~~~~~~l~~~lg~~~l~~~~~~ 476 (1303)
+...++..+|+|.++.+.....+.+.|++++++++|++.+.+... .+..++...+.+++++++++...++..++.++.+
T Consensus 89 ~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 168 (576)
T TIGR02204 89 VVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAV 168 (576)
T ss_pred HHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 899999999999999998888888999999999999999988653 3444444444444443333322222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 477 VLMVPLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFIL 556 (1303)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~ 556 (1303)
++.+.+..++.++.++..++.++..++..+.+.|.++|+++||.+++|+.+.+++++..++..+...+......+...+.
T Consensus 169 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (576)
T TIGR02204 169 PLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIV 248 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222234566777788888888889999999999999999999999999999888877765554444333333322222
Q ss_pred HHH--hHHhHHhhhhhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-CC-
Q 000746 557 NSI--PVVVTVVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILMP-NP- 632 (1303)
Q Consensus 557 ~~~--~~~~~~~~f~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~-~~- 632 (1303)
... ...+.++.+|++.+..|.++.+.+++...+...+..|+..++..+..+.+++.+++|+.++++.+++.... .+
T Consensus 249 ~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~ 328 (576)
T TIGR02204 249 IVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPK 328 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCc
Confidence 111 12233455677878889999999999999999999999999999999999999999999999765431111 11
Q ss_pred -CCCCCCCcEEEEeeEEEeCCC--CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE--------
Q 000746 633 -PLEPELPAVSIKNGNFSWDSK--SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI-------- 701 (1303)
Q Consensus 633 -~~~~~~~~i~~~~~~f~~~~~--~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~-------- 701 (1303)
...+..+.|+++|++|+|+++ +++|+|+||+++|||+++|+|+||||||||+++|+|+++|.+|. +.+
T Consensus 329 ~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~-I~i~g~~i~~~ 407 (576)
T TIGR02204 329 TLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGR-ILLDGVDLRQL 407 (576)
T ss_pred cCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCE-EEECCEEHHhc
Confidence 111123469999999999753 47999999999999999999999999999999999999999874 433
Q ss_pred -----cCeEEEEccCcccccccHHHHHccCCC-CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHH
Q 000746 702 -----RGTVAYVPQISWIFNATLRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSM 775 (1303)
Q Consensus 702 -----~~~iayv~Q~p~l~~~TireNI~~g~~-~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaL 775 (1303)
++.|+||||+|++|++||||||.++++ .++++++++++.+++.++++.+|+|++|.+||+|.+|||||||||+|
T Consensus 408 ~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~l 487 (576)
T TIGR02204 408 DPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAI 487 (576)
T ss_pred CHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHH
Confidence 347999999999999999999999875 67889999999999999999999999999999999999999999999
Q ss_pred HHHHHH-----------------------HHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhcchH
Q 000746 776 ARAVFN-----------------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRL 832 (1303)
Q Consensus 776 ARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~~~ 832 (1303)
|||+++ +.+.+..+++|+|+||||++.++.+|+|++|++|++++.|+|+++.++++.
T Consensus 488 aRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~~~~~ 567 (576)
T TIGR02204 488 ARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAKGGL 567 (576)
T ss_pred HHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHHcCCh
Confidence 999653 234455578999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 000746 833 FQKLME 838 (1303)
Q Consensus 833 ~~~l~~ 838 (1303)
|+++.+
T Consensus 568 ~~~l~~ 573 (576)
T TIGR02204 568 YARLAR 573 (576)
T ss_pred HHHHHh
Confidence 988764
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-57 Score=564.11 Aligned_cols=478 Identities=20% Similarity=0.223 Sum_probs=352.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 321 LNNSFGGRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPAWIGYIYAFLIF-VGVSFGVLTEAQYFQNVWRVGFRLR 399 (1303)
Q Consensus 321 l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~lr 399 (1303)
+.+.+++.++...++.++..++..+.|++++.++|.+..... ...+...+..+ +..+...+......+...+.+.++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (529)
T TIGR02868 7 LLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPP-VLYLSVAAVAVRAFGIGRAVFRYLERLVGHDAALRSL 85 (529)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777788888889999999999999997653322 11111111111 1111111111111112336677888
Q ss_pred HHHHHHHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 400 STLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQ-QLHGLWSAPFRITLSMVLLYQQLGVASLLGSLMLVL 478 (1303)
Q Consensus 400 ~~L~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~-~~~~~~~~~~~i~~~~~~l~~~lg~~~l~~~~~~~~ 478 (1303)
..++..+|+|.++++...+++.++|++++++++|++.+++... .+..++...+.+++++++++..-+..+++.++.+.+
T Consensus 86 ~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~ 165 (529)
T TIGR02868 86 GRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLAAGLLL 165 (529)
T ss_pred HHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 8999999999999999988899999999999999999998654 344444444444444443333222222222222122
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 479 MVPLQTFII-SKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILN 557 (1303)
Q Consensus 479 ~~~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~ 557 (1303)
+..+...+. +..++..++..+..++..+.+.|.++|+++||.+++|+.+.+++++..++..+...+..........+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (529)
T TIGR02868 166 AGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAAQL 245 (529)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222233 3334555666777888999999999999999999999999999988777666655555444444333322
Q ss_pred HHhH--HhHHhhhhhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC--
Q 000746 558 SIPV--VVTVVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILMPNPP-- 633 (1303)
Q Consensus 558 ~~~~--~~~~~~f~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~-- 633 (1303)
.... .+.++.+|.+.+..|.++.+.+.+.+.+...+..|+..++..+..+.++.++.+|+.++++.+++......+
T Consensus 246 ~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~ 325 (529)
T TIGR02868 246 LAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGVVPAA 325 (529)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCC
Confidence 2221 223445677777889999999999988889999999999999999999999999999999765432111110
Q ss_pred --CCCCCCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc---------
Q 000746 634 --LEPELPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR--------- 702 (1303)
Q Consensus 634 --~~~~~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~--------- 702 (1303)
..+..+.|+++|++|+|++++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|. +.++
T Consensus 326 ~~~~~~~~~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~-I~i~g~~i~~~~~ 404 (529)
T TIGR02868 326 GALGLGKPTLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGE-VTLDGVSVSSLQD 404 (529)
T ss_pred cccCCCCceEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE-EEECCEEhhhHHH
Confidence 1112346999999999987667999999999999999999999999999999999999999974 5444
Q ss_pred ---CeEEEEccCcccccccHHHHHccCCC-CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHH
Q 000746 703 ---GTVAYVPQISWIFNATLRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARA 778 (1303)
Q Consensus 703 ---~~iayv~Q~p~l~~~TireNI~~g~~-~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARA 778 (1303)
++|+||||+|++|++||||||.+|++ .++++++++++.|+++++++.+|+|+||.|||+|.+|||||||||+||||
T Consensus 405 ~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARa 484 (529)
T TIGR02868 405 ELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARA 484 (529)
T ss_pred HHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHH
Confidence 48999999999999999999999875 68999999999999999999999999999999999999999999999999
Q ss_pred HHH-----------------------HHHhHhcCCCEEEEEecCC
Q 000746 779 VFN-----------------------SCIKEELRGKTRILVTNQL 800 (1303)
Q Consensus 779 l~~-----------------------~~i~~~~~~~TvilvtH~~ 800 (1303)
+++ +.+.+..+++|+|+||||+
T Consensus 485 ll~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 485 LLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 653 2344555789999999995
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-57 Score=565.76 Aligned_cols=504 Identities=18% Similarity=0.257 Sum_probs=375.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Q 000746 337 IGNDLSQFVGPVLLNHLLQSMQRGDPAW-IGYIYAFLIFVGVSFGVLTEAQYFQNVWRVGFRLRSTLVAAIFRKTLRLTH 415 (1303)
Q Consensus 337 ~~~~~~~~~~p~ll~~li~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~L~~~i~~k~l~l~~ 415 (1303)
++..++..+.|++++.++|.+..+.... ....++.++++..++..+..........+.+.++...++..+|+|.++.+.
T Consensus 5 ~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~ 84 (569)
T PRK10789 5 IIIAMLQLIPPKVVGIIVDGVTEQHMTTGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHP 84 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 4455667778999999999775432111 111222222222222212211111123356778888899999999999999
Q ss_pred ccccCCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 416 EARKGFPSGKVTNMITTDANALQQIS-QQLHGLWSAPFRITLSMVLLYQQLGV-ASLLGSLMLVLMVPLQTFIISKMRKL 493 (1303)
Q Consensus 416 ~~~~~~~~g~i~nl~s~Dv~~i~~~~-~~~~~~~~~~~~i~~~~~~l~~~lg~-~~l~~~~~~~~~~~~~~~~~~~~~~~ 493 (1303)
..+.+.++|++++++++|++.+.... ..+..++..++..++++++++..+++ .+++.++++.+...+...+.++.++.
T Consensus 85 ~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~ 164 (569)
T PRK10789 85 EFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHER 164 (569)
T ss_pred HHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999998654 33444555444444333333212222 22222222222223334555666667
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--HHhHHhhhhhh
Q 000746 494 TKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSIP--VVVTVVSFGTF 571 (1303)
Q Consensus 494 ~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~f~~~ 571 (1303)
.++..+..++..+.+.|.++|+++||.+++|+.+.+++.+..++..+...+..........+..... ..+.++.+|.+
T Consensus 165 ~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ 244 (569)
T PRK10789 165 FKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSW 244 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777788889999999999999999999999998887666544444443333332222222111 12234556778
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcEEEEeeEEEeC
Q 000746 572 TLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILMPNPPLEPELPAVSIKNGNFSWD 651 (1303)
Q Consensus 572 ~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~f~~~ 651 (1303)
.+.+|.+++|.+++.+.+...+..|+..++..+..+.+++++.+|+.++++.+++......+.....+.|+++|++|+|+
T Consensus 245 lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~ 324 (569)
T PRK10789 245 MVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGSEPVPEGRGELDVNIRQFTYP 324 (569)
T ss_pred HHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCCCCCCCCcEEEEEEEEECC
Confidence 78889999999999999999999999999999999999999999999999765332111111111234699999999997
Q ss_pred CC-CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------EcCeEEEEccCccccccc
Q 000746 652 SK-SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------IRGTVAYVPQISWIFNAT 718 (1303)
Q Consensus 652 ~~-~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------~~~~iayv~Q~p~l~~~T 718 (1303)
.+ .++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. ++++|+||||+|++|++|
T Consensus 325 ~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~t 404 (569)
T PRK10789 325 QTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDT 404 (569)
T ss_pred CCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeecccc
Confidence 54 47999999999999999999999999999999999999999975321 235799999999999999
Q ss_pred HHHHHccCCC-CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH----------------
Q 000746 719 LRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN---------------- 781 (1303)
Q Consensus 719 ireNI~~g~~-~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~---------------- 781 (1303)
|+|||.++.+ .++++++++++.+++++++..+|+|++|.+||+|.+|||||||||+||||+++
T Consensus 405 i~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~ 484 (569)
T PRK10789 405 VANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDG 484 (569)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCH
Confidence 9999999964 78999999999999999999999999999999999999999999999999653
Q ss_pred -------HHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhcchHHHHHHHHh
Q 000746 782 -------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLMENA 840 (1303)
Q Consensus 782 -------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~ 840 (1303)
+.+++..+++|+|+||||++.++.||+|++|++|+++++|+|+++.++++.|+++++.+
T Consensus 485 ~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~ 550 (569)
T PRK10789 485 RTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWYRDMYRYQ 550 (569)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHcCChHHHHHHHh
Confidence 23444557899999999999999999999999999999999999999999999987653
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-57 Score=616.61 Aligned_cols=447 Identities=21% Similarity=0.299 Sum_probs=355.0
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 393 RVGFRLRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQ-QLHGLWSAPFRITLSMVLLYQQLGVASLL 471 (1303)
Q Consensus 393 ~~~~~lr~~L~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~-~~~~~~~~~~~i~~~~~~l~~~lg~~~l~ 471 (1303)
..+.+.-..++..++++.++.+...++..++|+++|++++|++.+++.+. .+..+...++.++.+++++.....+.+++
T Consensus 1031 ~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~ 1110 (1522)
T TIGR00957 1031 IGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVI 1110 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777888999999999999999999999999999999998654 44555555665555554443333333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 472 GSLMLVLMVPLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAF 551 (1303)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~ 551 (1303)
.+.++++...++.++.+..++.++...+.+++..+.+.|.++|+++||+||+|+.+.++..+..+...+..........+
T Consensus 1111 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 1190 (1522)
T TIGR00957 1111 IPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRW 1190 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222333333445555566666666777788889999999999999999999999998887777666655444444444
Q ss_pred HHHHHHHHhHHhHHhhhhhhhhh-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-
Q 000746 552 NSFILNSIPVVVTVVSFGTFTLL-GGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILM- 629 (1303)
Q Consensus 552 ~~~~~~~~~~~~~~~~f~~~~~~-~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~- 629 (1303)
..........++ ++..+.+.+. .+.+++|.+..++.+...+..|+..+...+..+..+.+|.+|+.++++.+++...
T Consensus 1191 ~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~ 1269 (1522)
T TIGR00957 1191 LAVRLECVGNCI-VLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQ 1269 (1522)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccc
Confidence 444333322221 2222333333 5779999999999999999999999999999999999999999999976543211
Q ss_pred ---CC-CCCCCCCCcEEEEeeEEEeCCC-CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----
Q 000746 630 ---PN-PPLEPELPAVSIKNGNFSWDSK-SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV---- 700 (1303)
Q Consensus 630 ---~~-~~~~~~~~~i~~~~~~f~~~~~-~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~---- 700 (1303)
.. ++.++..+.|+|+|++|+|+++ +++|+|+||+|++||+++|||+||||||||+++|+|+++|++|.+..
T Consensus 1270 ~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~d 1349 (1522)
T TIGR00957 1270 IQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLN 1349 (1522)
T ss_pred ccCCCCCCCCCCCCcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEE
Confidence 11 1122445679999999999765 47999999999999999999999999999999999999999875421
Q ss_pred --------EcCeEEEEccCcccccccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHH
Q 000746 701 --------IRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQR 772 (1303)
Q Consensus 701 --------~~~~iayv~Q~p~l~~~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQR 772 (1303)
+|++|+||||||.||+|||||||....++++++++++++.|++++.++.+|+|+||.|||+|.+||||||||
T Consensus 1350 I~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQr 1429 (1522)
T TIGR00957 1350 IAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQL 1429 (1522)
T ss_pred ccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHH
Confidence 356899999999999999999999555799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhc
Q 000746 773 VSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 773 iaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
||||||+++ +.+++..+++|+|+||||++++..+|+|++|++|+|+|.|+|+||+++
T Consensus 1430 l~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl~~ 1509 (1522)
T TIGR00957 1430 VCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQ 1509 (1522)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999653 456667789999999999999999999999999999999999999998
Q ss_pred chHHHHHHHHh
Q 000746 830 GRLFQKLMENA 840 (1303)
Q Consensus 830 ~~~~~~l~~~~ 840 (1303)
++.|++++++.
T Consensus 1510 ~~~f~~l~~~~ 1520 (1522)
T TIGR00957 1510 RGIFYSMAKDA 1520 (1522)
T ss_pred CCHHHHHHHHc
Confidence 99999998653
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-57 Score=515.88 Aligned_cols=453 Identities=24% Similarity=0.393 Sum_probs=343.3
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Q 000746 384 EAQYFQNV--WRVGFRLRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQLHGLWSAPFRIT--LSMV 459 (1303)
Q Consensus 384 ~~~~~~~~--~~~~~~lr~~L~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~~~~~~~~~~i~--~~~~ 459 (1303)
..+|..+. .....++-+.++..+|+|....++....+..+|+++|++..|+|.+++.+..+...+...+.++ +.+.
T Consensus 73 ~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~ 152 (573)
T COG4987 73 AARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIG 152 (573)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHH
Confidence 35676653 3677899999999999999999998888899999999999999999998766654443332222 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHH
Q 000746 460 LLYQQLGVASLLGSLMLVLMVPLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDEL 539 (1303)
Q Consensus 460 ~l~~~lg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~ 539 (1303)
+-+..++.+.+++..++++.+.+.....++.++..++..+.+....+.+.|.+.|....+.+|.++.+.+.+.+.-+.-.
T Consensus 153 L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~ 232 (573)
T COG4987 153 LSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWL 232 (573)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 32334444444444433333333345556666666666666777778899999999999999999999998876655555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhH---HhhhhhhhhhCCCCC-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 000746 540 SWFRKAQFLSAFNSFILNSIPVVVT---VVSFGTFTLLGGDLT-PARAFTSLSLFAVLRFPLNMLP-NLLSQVVNANVSL 614 (1303)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~f~~~~~~~~~l~-~~~~f~~l~l~~~l~~pl~~l~-~~~~~~~~a~~s~ 614 (1303)
+..++...+..+..++...+..+.. .++.+.- .-.|..+ +..+...+..|..+ .++..+. ..+....+...|.
T Consensus 233 ~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~-~~~G~~~~~~aa~~ll~~f~~~-eaf~~L~~~A~~~lgq~~~Sa 310 (573)
T COG4987 233 KAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQ-VGAGALAQPGAALALLVIFAAL-EAFEPLAPGAFQHLGQVIASA 310 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcCCCcchhHHHHHHHHHHHHH-HHHhhhcchhHHHhhHHHHHH
Confidence 5555555555555555443332221 1222221 1224444 23323333223322 2333333 7778899999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCCCcEEEEeeEEEeCCCC-CccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCC
Q 000746 615 QRLEELLLAEERILMPNPPLEPELPAVSIKNGNFSWDSKS-PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP 693 (1303)
Q Consensus 615 ~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~-~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~ 693 (1303)
+|+.+..+.+++...++++.......++++|++|+|++++ ++|+|+||++++||++||+|+||||||||+++|.|.++|
T Consensus 311 ~Rl~~i~~q~~e~~~~~~~~~~~~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~ 390 (573)
T COG4987 311 RRLNDILDQKPEVTFPDEQTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDP 390 (573)
T ss_pred HHHhhhccCCcccCCCccccCCccceeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCC
Confidence 9999999876654333221222222799999999998776 799999999999999999999999999999999999999
Q ss_pred CCCceEE------------EcCeEEEEccCcccccccHHHHHccCCC-CChhhHHHHHHHHhhHHHhhcCCCCCCccccC
Q 000746 694 LKDASVV------------IRGTVAYVPQISWIFNATLRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGE 760 (1303)
Q Consensus 694 ~~g~~~~------------~~~~iayv~Q~p~l~~~TireNI~~g~~-~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige 760 (1303)
++|+... ++..|++++|.+.+|++|+|||+.+++| .+||++++++++++|++.++..|+|++|.+||
T Consensus 391 ~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge 470 (573)
T COG4987 391 QQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGE 470 (573)
T ss_pred CCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhcc
Confidence 9985321 2347999999999999999999999997 68999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHHHHHHH-----------------------HHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEE
Q 000746 761 RGVNISGGQKQRVSMARAVFNS-----------------------CIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMI 817 (1303)
Q Consensus 761 ~G~~LSGGQkQRiaLARAl~~~-----------------------~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i 817 (1303)
+|.+||||||||++|||+++++ .+.+..+|||+|+||||+..++.+|+|++|++|++
T Consensus 471 ~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~Gki 550 (573)
T COG4987 471 GGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKI 550 (573)
T ss_pred CCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEECCee
Confidence 9999999999999999997653 24456689999999999999999999999999999
Q ss_pred EEecCHHHHHhcchHHHHHHH
Q 000746 818 KEEGSFEELSKHGRLFQKLME 838 (1303)
Q Consensus 818 ~~~g~~~~l~~~~~~~~~l~~ 838 (1303)
+++|+|++++.+++.|+++++
T Consensus 551 ie~G~~~~Ll~~~g~~~~l~q 571 (573)
T COG4987 551 IEEGTHAELLANNGRYKRLYQ 571 (573)
T ss_pred eecCCHHhhhccccHHHHHhc
Confidence 999999999999999998864
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-56 Score=558.35 Aligned_cols=515 Identities=18% Similarity=0.257 Sum_probs=387.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Q 000746 321 LNNSFGGRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPAWIGYIYAFLIFVGVSFGVLTEAQYF--QNVWRVGFRL 398 (1303)
Q Consensus 321 l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l 398 (1303)
..+.+++.++...++.++..++..+.|++++.++|.+...+.. ..+. ...+ +..++..+ ..|. ....+...++
T Consensus 13 ~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~-~~~~-~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~ 87 (585)
T TIGR01192 13 YLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSDV-LPTL-ALWA-GFGVFNTI--AYVLVAREADRLAHGR 87 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH-HHHH-HHHH-HHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 3456777788888888999999999999999999977543221 1111 1111 11111111 1121 1234677788
Q ss_pred HHHHHHHHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 399 RSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQ-QLHGLWSAPFRITLSMVLLYQQLGVASLLGSLMLV 477 (1303)
Q Consensus 399 r~~L~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~-~~~~~~~~~~~i~~~~~~l~~~lg~~~l~~~~~~~ 477 (1303)
+..++..+|+|.++++...+++.++|++++++++|++.+.+... .+..+....+.+++.++.++..-+..+++.+++++
T Consensus 88 ~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~ 167 (585)
T TIGR01192 88 RATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVLGI 167 (585)
T ss_pred HHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999998889999999999999999987543 33333444444433333322222222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 478 LMVPLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILN 557 (1303)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~ 557 (1303)
+...+..++.++.++..++..+..++..+.+.|.++|+++||.++.|+.+.+++++..++..+...+..........+..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (585)
T TIGR01192 168 LYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNR 247 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233345566667777777777888899999999999999999999999888877666544433333222222222211
Q ss_pred HHh--HHhHHhhhhhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC--C
Q 000746 558 SIP--VVVTVVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILMPNP--P 633 (1303)
Q Consensus 558 ~~~--~~~~~~~f~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~--~ 633 (1303)
... ..+.++.+|.+.+..|.++.|.+++.+.++..+..|+..+...+..+.++..+.+|+.++++.+++...... +
T Consensus 248 ~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~ 327 (585)
T TIGR01192 248 MASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPADAPE 327 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCccCCC
Confidence 111 123345677788888999999999999999999999999999999999999999999999875432211111 1
Q ss_pred CCCCCCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------E
Q 000746 634 LEPELPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------I 701 (1303)
Q Consensus 634 ~~~~~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------~ 701 (1303)
.....+.++++|++|+|++++++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. +
T Consensus 328 ~~~~~~~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~ 407 (585)
T TIGR01192 328 LPNVKGAVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESL 407 (585)
T ss_pred CCCCCCeEEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHH
Confidence 1112346999999999986567999999999999999999999999999999999999999975421 2
Q ss_pred cCeEEEEccCcccccccHHHHHccCCC-CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHH
Q 000746 702 RGTVAYVPQISWIFNATLRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF 780 (1303)
Q Consensus 702 ~~~iayv~Q~p~l~~~TireNI~~g~~-~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~ 780 (1303)
++.++||||+|++|++|++|||.++.+ .++++++++++.+++++++..+|+|++|.+|++|.+|||||||||+||||++
T Consensus 408 ~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall 487 (585)
T TIGR01192 408 RKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAIL 487 (585)
T ss_pred HhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHh
Confidence 357999999999999999999999865 6788899999999999999999999999999999999999999999999965
Q ss_pred H-----------------------HHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhcchHHHHHH
Q 000746 781 N-----------------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLM 837 (1303)
Q Consensus 781 ~-----------------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~ 837 (1303)
. +.+.+..+++|+|+||||++.++.||+|++|++|++++.|+|+++.++++.|++++
T Consensus 488 ~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~ 567 (585)
T TIGR01192 488 KNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKDGRFYKLL 567 (585)
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHCCChHHHHH
Confidence 3 33445557899999999999999999999999999999999999999999999987
Q ss_pred HHh
Q 000746 838 ENA 840 (1303)
Q Consensus 838 ~~~ 840 (1303)
+.+
T Consensus 568 ~~~ 570 (585)
T TIGR01192 568 RRS 570 (585)
T ss_pred HhC
Confidence 643
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-57 Score=603.69 Aligned_cols=513 Identities=19% Similarity=0.207 Sum_probs=369.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 323 NSFGGRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDP-AWIGYIYAFLIFVGVSFGVLTEAQYFQNVWRVGFRLRST 401 (1303)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~ 401 (1303)
+.+++.++.++++.++.+++.++.|+++..+++.+..... ......+++++++..++..++.....+...+.+.++...
T Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~ 900 (1466)
T PTZ00265 821 FSYKKDVTIIALSILVAGGLYPVFALLYAKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKT 900 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455567888888889999999999999999986543211 111111221111111111111111111234678888888
Q ss_pred HHHHHHHHHHcCCcccccC--CChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 402 LVAAIFRKTLRLTHEARKG--FPSGKVTNMITTDANALQQISQ-QLHGLWSAPFRITLSMVLLYQQLGVASLLGSLMLVL 478 (1303)
Q Consensus 402 L~~~i~~k~l~l~~~~~~~--~~~g~i~nl~s~Dv~~i~~~~~-~~~~~~~~~~~i~~~~~~l~~~lg~~~l~~~~~~~~ 478 (1303)
++..+|++.++.+...+++ .++|++++++++|++.++.... .+..+...++.+++++++++..-+..+++.+ ++
T Consensus 901 lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~---~~ 977 (1466)
T PTZ00265 901 MKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLT---GT 977 (1466)
T ss_pred HHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 9999999999999887764 7899999999999999998543 3444444444444443333222112122111 11
Q ss_pred HHHHHHHHHHHHHHHH-HHH-----------------HHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHH
Q 000746 479 MVPLQTFIISKMRKLT-KEG-----------------LQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELS 540 (1303)
Q Consensus 479 ~~~~~~~~~~~~~~~~-~~~-----------------~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~ 540 (1303)
+..+...+.++.+... ++. .+..++....++|.++|+++||.|+.|+.+.+++.+..++..+
T Consensus 978 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~ 1057 (1466)
T PTZ00265 978 YFIFMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNK 1057 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 1111122222222111 111 1223445678999999999999999999999999887766555
Q ss_pred HHHHHHHHHHHHHHHHHHHhH--HhHHhhhhhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 541 WFRKAQFLSAFNSFILNSIPV--VVTVVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLE 618 (1303)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~f~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~ 618 (1303)
..++.....++...+..+... .+.++++|++.+..|.++.+.++.++.++.....++..+...++.+.+++++++|+.
T Consensus 1058 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~ 1137 (1466)
T PTZ00265 1058 GQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYY 1137 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 545444443333322222222 234567888888899999999888776665555678888899999999999999999
Q ss_pred HHHHHHhhhcCC---CCC---CCCCCCcEEEEeeEEEeCCC--CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcC
Q 000746 619 ELLLAEERILMP---NPP---LEPELPAVSIKNGNFSWDSK--SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGE 690 (1303)
Q Consensus 619 ~~l~~~~~~~~~---~~~---~~~~~~~i~~~~~~f~~~~~--~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~ 690 (1303)
++++.+++.+.. ... .....+.|+|+||+|+|+++ .++|+|+||+|++|+++|||||||||||||+++|+|+
T Consensus 1138 ~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ 1217 (1466)
T PTZ00265 1138 PLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRF 1217 (1466)
T ss_pred HHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 999764321110 010 01123469999999999753 3799999999999999999999999999999999999
Q ss_pred CCC------------------------------------------------------CCCceEE-------------EcC
Q 000746 691 LPP------------------------------------------------------LKDASVV-------------IRG 703 (1303)
Q Consensus 691 ~~~------------------------------------------------------~~g~~~~-------------~~~ 703 (1303)
|+| ++|. +. +|+
T Consensus 1218 ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-I~idG~di~~~~~~~lR~ 1296 (1466)
T PTZ00265 1218 YDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGK-ILLDGVDICDYNLKDLRN 1296 (1466)
T ss_pred CCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCe-EEECCEEHHhCCHHHHHh
Confidence 998 3553 33 356
Q ss_pred eEEEEccCcccccccHHHHHccCCC-CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-
Q 000746 704 TVAYVPQISWIFNATLRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN- 781 (1303)
Q Consensus 704 ~iayv~Q~p~l~~~TireNI~~g~~-~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~- 781 (1303)
+|+||||+|.||+|||||||.+|++ .++++++++++.++++++++.||+|+||.|||+|.+||||||||||||||+++
T Consensus 1297 ~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~ 1376 (1466)
T PTZ00265 1297 LFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLRE 1376 (1466)
T ss_pred hccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcC
Confidence 8999999999999999999999975 78999999999999999999999999999999999999999999999999653
Q ss_pred ----------------------HHHhHh--cCCCEEEEEecCCCcccccCEEEEEeC----CEEE-EecCHHHHHh-cch
Q 000746 782 ----------------------SCIKEE--LRGKTRILVTNQLHFLPHVDRIILVSE----GMIK-EEGSFEELSK-HGR 831 (1303)
Q Consensus 782 ----------------------~~i~~~--~~~~TvilvtH~~~~l~~aD~ii~l~~----G~i~-~~g~~~~l~~-~~~ 831 (1303)
+.+.+. .+++|+|+||||++.++.||+|++|++ |+++ |+|+|+||++ +++
T Consensus 1377 p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g 1456 (1466)
T PTZ00265 1377 PKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDG 1456 (1466)
T ss_pred CCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhcCCC
Confidence 344454 258999999999999999999999999 9954 8999999998 589
Q ss_pred HHHHHHHH
Q 000746 832 LFQKLMEN 839 (1303)
Q Consensus 832 ~~~~l~~~ 839 (1303)
.|++++..
T Consensus 1457 ~Y~~l~~~ 1464 (1466)
T PTZ00265 1457 VYKKYVKL 1464 (1466)
T ss_pred hHHHHHhh
Confidence 99998754
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-56 Score=603.23 Aligned_cols=450 Identities=19% Similarity=0.260 Sum_probs=336.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 392 WRVGFRLRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQ-QLHGLWSAPFRITLSMVLLYQQLGVASL 470 (1303)
Q Consensus 392 ~~~~~~lr~~L~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~-~~~~~~~~~~~i~~~~~~l~~~lg~~~l 470 (1303)
.+.+.+.-..++..++++.++.+...+++.++|+++|++++|++.+++... .+..+....+.++..++++.....+..+
T Consensus 978 ~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~~~~ 1057 (1622)
T PLN03130 978 IMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISLW 1057 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777788889999999999999999999999999999999998643 3444444444444443332222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 471 LGSLMLVLMVPLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSA 550 (1303)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~ 550 (1303)
+.+.++++++.+..++.+..++.++.....+++..+.+.|.++|+++||+|++++.+.++..+..+...+..........
T Consensus 1058 ~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 1137 (1622)
T PLN03130 1058 AIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSNR 1137 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21222222223333444555555666666777888999999999999999999998888776666655444333332333
Q ss_pred HHHHHHHHHhHHhHHhhhhhhhhhC-CCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 551 FNSFILNSIPVVVTVVSFGTFTLLG-GDLT-----PARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAE 624 (1303)
Q Consensus 551 ~~~~~~~~~~~~~~~~~f~~~~~~~-~~l~-----~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~ 624 (1303)
+..........++. +..+.+.+.. +... ++.+...+++...+..++..+......+..+.+|.+|+.++++.+
T Consensus 1138 wl~~~l~~~~~~~i-~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~ 1216 (1622)
T PLN03130 1138 WLAIRLETLGGLMI-WLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLP 1216 (1622)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 33322222221111 1112222322 2211 333444445556666777788888888999999999999999765
Q ss_pred hhhcC----CC-CCCCCCCCcEEEEeeEEEeCCC-CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCce
Q 000746 625 ERILM----PN-PPLEPELPAVSIKNGNFSWDSK-SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDAS 698 (1303)
Q Consensus 625 ~~~~~----~~-~~~~~~~~~i~~~~~~f~~~~~-~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~ 698 (1303)
++.+. .. ++.++..+.|+|+|++|+|+++ +++|+|+||+|++||++||||+||||||||+++|+|+++|++|.+
T Consensus 1217 ~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I 1296 (1622)
T PLN03130 1217 SEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRI 1296 (1622)
T ss_pred CcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceE
Confidence 43211 11 1122344679999999999754 479999999999999999999999999999999999999999854
Q ss_pred EE------------EcCeEEEEccCcccccccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCc
Q 000746 699 VV------------IRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNIS 766 (1303)
Q Consensus 699 ~~------------~~~~iayv~Q~p~l~~~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LS 766 (1303)
.. +|++|+||||+|.||+|||||||.+++++++++++++++.|+++++++.+|+|+||.|||+|.+||
T Consensus 1297 ~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLS 1376 (1622)
T PLN03130 1297 LIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFS 1376 (1622)
T ss_pred EECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCC
Confidence 21 356899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCH
Q 000746 767 GGQKQRVSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSF 823 (1303)
Q Consensus 767 GGQkQRiaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~ 823 (1303)
||||||||||||+++ +.+++..+++|+|+||||++++..||+|+||++|+|+|.|+|
T Consensus 1377 gGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~ 1456 (1622)
T PLN03130 1377 VGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTP 1456 (1622)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999653 456667789999999999999999999999999999999999
Q ss_pred HHHHhc-chHHHHHHHHhcc
Q 000746 824 EELSKH-GRLFQKLMENAGK 842 (1303)
Q Consensus 824 ~~l~~~-~~~~~~l~~~~~~ 842 (1303)
+||+++ ++.|++++++.+.
T Consensus 1457 ~eLl~~~~g~f~~L~~~~~~ 1476 (1622)
T PLN03130 1457 ENLLSNEGSAFSKMVQSTGA 1476 (1622)
T ss_pred HHHHhCCCCHHHHHHHHcCh
Confidence 999987 6899999887654
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-56 Score=551.64 Aligned_cols=496 Identities=23% Similarity=0.298 Sum_probs=370.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 324 SFGGRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPAWIGYIYAFLIFVGVSFGVLTEAQYFQNVWRVGFRLRSTLV 403 (1303)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~L~ 403 (1303)
.+++.++...++.++..++..+.|++++.++|.+.........+.+.+++++..++..++.....+...+.+.++...++
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 82 (544)
T TIGR01842 3 KNKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGSVPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALN 82 (544)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677778888888999999999999999764322211112222222222222222222222233467888899999
Q ss_pred HHHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Q 000746 404 AAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQ--LHGLWSAPFRITLSMVL--LYQQLGVASLLGSLMLVLM 479 (1303)
Q Consensus 404 ~~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~--~~~~~~~~~~i~~~~~~--l~~~lg~~~l~~~~~~~~~ 479 (1303)
..+|+|.++++.. ..+...+.+++|++.+++.... +..+...++.++..+++ +.+.+++..+++. ++.
T Consensus 83 ~~~~~~ll~~~~~-----~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~---~l~ 154 (544)
T TIGR01842 83 QPIFAASFSATLR-----RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIYLLVCFLLHPWIGILALGGA---VVL 154 (544)
T ss_pred HHHHHHHhcCccc-----CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH---HHH
Confidence 9999999998863 2345577889999999876533 33334444433332222 2223333322222 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 480 VPLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSI 559 (1303)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~ 559 (1303)
+.+..+..++.++..++.++..+++.+.+.|.++|+++||.|++|+.+.+++++..++..+...+..........+....
T Consensus 155 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (544)
T TIGR01842 155 VGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYF 234 (544)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22334455666777778888899999999999999999999999999999998877776655544444333332222222
Q ss_pred hH--HhHHhhhhhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 000746 560 PV--VVTVVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILMPNPPLEPE 637 (1303)
Q Consensus 560 ~~--~~~~~~f~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~ 637 (1303)
.. .+.++++|++.+..|.+|+|.+++.+.++..+..|+..+...+..+.++..+.+|+.++++.+++... ..+..+.
T Consensus 235 ~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~-~~~~~~~ 313 (544)
T TIGR01842 235 RIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDP-AMPLPEP 313 (544)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccC-CCCCCCC
Confidence 11 23345678888888999999999999999999999999999999999999999999999976543211 1111112
Q ss_pred CCcEEEEeeEEEeCCC-CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------EcCe
Q 000746 638 LPAVSIKNGNFSWDSK-SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------IRGT 704 (1303)
Q Consensus 638 ~~~i~~~~~~f~~~~~-~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------~~~~ 704 (1303)
.+.++++|++|+|+++ +++|+|+||++++||+++|+||||||||||+++|+|+++|.+|.+.. +++.
T Consensus 314 ~~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~ 393 (544)
T TIGR01842 314 EGHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKH 393 (544)
T ss_pred CCeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhh
Confidence 3469999999999754 47999999999999999999999999999999999999999985321 2457
Q ss_pred EEEEccCcccccccHHHHHccCCC-CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH--
Q 000746 705 VAYVPQISWIFNATLRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN-- 781 (1303)
Q Consensus 705 iayv~Q~p~l~~~TireNI~~g~~-~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~-- 781 (1303)
++||||+|++|++|++|||.++.+ .++++++++++.++++++++.+|+|++|.+||+|.+||||||||++||||+++
T Consensus 394 i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~ 473 (544)
T TIGR01842 394 IGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDP 473 (544)
T ss_pred eEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999997665 78999999999999999999999999999999999999999999999999653
Q ss_pred ---------------------HHHhHhc-CCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHh
Q 000746 782 ---------------------SCIKEEL-RGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 782 ---------------------~~i~~~~-~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
+.+.+.. +++|+|++|||++.+..||+|++|++|++++.|+|+++.+
T Consensus 474 ~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 474 KLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 2344433 5799999999999999999999999999999999999864
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-55 Score=547.91 Aligned_cols=484 Identities=22% Similarity=0.276 Sum_probs=355.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 326 GGRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQ-RGDPAWIGYIYAFLIFVGVSFGVLTEAQYFQNVWRVGFRLRSTLVA 404 (1303)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~L~~ 404 (1303)
++.++..+++.++..++..+.|++++.++|.+. .+........++..+++..++..+......+...+.+.++...++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 81 (529)
T TIGR02857 2 RRALALLGLLGALGALLIIAQAWLLARVIDGLISAGEPLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRE 81 (529)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666777888888999999999999999874 3222111111111111111111121111112234677888889999
Q ss_pred HHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 000746 405 AIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQ-QLHGLWSAPFRITLSMVLLY---QQLGVASLLGSLMLVLMV 480 (1303)
Q Consensus 405 ~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~-~~~~~~~~~~~i~~~~~~l~---~~lg~~~l~~~~~~~~~~ 480 (1303)
.+|+|.++.+....++.++|++++++++|++.+++... .+..++...+.+++++++++ +.+++..+++. ++..
T Consensus 82 ~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~---~l~~ 158 (529)
T TIGR02857 82 RLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTA---PLIP 158 (529)
T ss_pred HHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHH
Confidence 99999999999888899999999999999999998653 34444444444444433332 22222222211 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000746 481 PLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSIP 560 (1303)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~ 560 (1303)
.+..++.++.++..++..+..++..+.+.|.++|+++||.|+.|+.+.+++++..++..+...+..........+.....
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (529)
T TIGR02857 159 IFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFA 238 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12234556666777777888889999999999999999999999999999987666544443333333332222222221
Q ss_pred HH--hHHhhhhhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 000746 561 VV--VTVVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILMPNPPLEPEL 638 (1303)
Q Consensus 561 ~~--~~~~~f~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~ 638 (1303)
.+ +.++.++++.+..|.++.+.+++.+.+...+..|+..+...+..+.++..+++|+.++++.+++.....+...+..
T Consensus 239 ~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~~~~~~~~ 318 (529)
T TIGR02857 239 TLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKAPVTAAPA 318 (529)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcCCCCCCC
Confidence 11 1122344455557889999999999999999999999999999999999999999999974432111111111122
Q ss_pred CcEEEEeeEEEeCCCC-CccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------EcCeE
Q 000746 639 PAVSIKNGNFSWDSKS-PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------IRGTV 705 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~-~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------~~~~i 705 (1303)
+.|+++|++|+|++++ ++|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+.. +++++
T Consensus 319 ~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i 398 (529)
T TIGR02857 319 PSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQI 398 (529)
T ss_pred CeEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhhe
Confidence 4799999999998653 7999999999999999999999999999999999999999874421 24469
Q ss_pred EEEccCcccccccHHHHHccCCC-CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH---
Q 000746 706 AYVPQISWIFNATLRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN--- 781 (1303)
Q Consensus 706 ayv~Q~p~l~~~TireNI~~g~~-~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~--- 781 (1303)
+||||+|++|++||||||.++.+ .++++++++++.++++++++.+|+|+||.+||+|.+||||||||++||||+++
T Consensus 399 ~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ 478 (529)
T TIGR02857 399 AWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAP 478 (529)
T ss_pred EEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999875 68899999999999999999999999999999999999999999999999653
Q ss_pred --------------------HHHhHhcCCCEEEEEecCCCcccccCEEEEE
Q 000746 782 --------------------SCIKEELRGKTRILVTNQLHFLPHVDRIILV 812 (1303)
Q Consensus 782 --------------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l 812 (1303)
+.+.+..+++|+|+||||++.++.||+|++|
T Consensus 479 ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 479 LLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred EEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 2344555789999999999999999999985
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-55 Score=500.63 Aligned_cols=505 Identities=24% Similarity=0.333 Sum_probs=374.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc--CCcchHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 333 GLFKIGNDLSQFVGPVLLNHLLQSMQR--GDPAWIGYIYA---FLIFVGVSFGVLTEAQYFQNVWRVGFRLRSTLVAAIF 407 (1303)
Q Consensus 333 ~~~~~~~~~~~~~~p~ll~~li~~~~~--~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~L~~~i~ 407 (1303)
..+.+...++....|++++.+++.+.. +.+.......+ ..+++...-..+...+-+ ....+..+.-......+|
T Consensus 36 l~~l~~aK~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~-vfa~v~q~~iR~~~~~vf 114 (591)
T KOG0057|consen 36 LGLLLGAKILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNF-VFAKVAQRVIRDSSSDVF 114 (591)
T ss_pred HHHHHhhhHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 334444467777889999999998853 22211111111 111111111111111111 112445566666777899
Q ss_pred HHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 000746 408 RKTLRLTHEARKGFPSGKVTNMITTDANALQQISQ-QLHGLWSAPFRITLSMVLLYQQLGVASLLGSLMLVLMVP-LQTF 485 (1303)
Q Consensus 408 ~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~-~~~~~~~~~~~i~~~~~~l~~~lg~~~l~~~~~~~~~~~-~~~~ 485 (1303)
++.+.+....+.+..+|++.+.|..-...|..++. .+..++...+++.+....++...|....+..++.+.... +...
T Consensus 115 ~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~ 194 (591)
T KOG0057|consen 115 RHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIV 194 (591)
T ss_pred HHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEe
Confidence 99999999888889999999999999888888754 345566667778888888888888765443333332222 2223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--HHh
Q 000746 486 IISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSIP--VVV 563 (1303)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~--~~~ 563 (1303)
+...-.+.+++.+++.+...+.+-|.|.+..+||.|+-|+...+++...-.+.-+...+.....++.++....+. ..+
T Consensus 195 ~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~ 274 (591)
T KOG0057|consen 195 VTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALT 274 (591)
T ss_pred ehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHH
Confidence 344445667777888888889999999999999999999999999976655433333333333333333322211 112
Q ss_pred HHhhhhhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcEEE
Q 000746 564 TVVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILMPNPPLEPELPAVSI 643 (1303)
Q Consensus 564 ~~~~f~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~ 643 (1303)
.+...+..-+..+.+|.+......++...+..|+..+...+..+.++..-++-+....+.++.......+.....+.|+|
T Consensus 275 ~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~~~~~i~~~~~~I~F 354 (591)
T KOG0057|consen 275 FIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQEAALPIELFGGSIEF 354 (591)
T ss_pred HHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhhccCCcccCCCcEEE
Confidence 22233334455678999999999999999999999999999998888887766655444333221111223333456999
Q ss_pred EeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------EcCeEEEEccC
Q 000746 644 KNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------IRGTVAYVPQI 711 (1303)
Q Consensus 644 ~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------~~~~iayv~Q~ 711 (1303)
+||+|.|++++++|+++||+|++||++||+|+|||||||++++|+++++ .+|.+.. +|+.|||||||
T Consensus 355 ~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd 433 (591)
T KOG0057|consen 355 DDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQD 433 (591)
T ss_pred EeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCc
Confidence 9999999988889999999999999999999999999999999999999 7875432 56789999999
Q ss_pred cccccccHHHHHccCCC-CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHHH--------
Q 000746 712 SWIFNATLRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFNS-------- 782 (1303)
Q Consensus 712 p~l~~~TireNI~~g~~-~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~~-------- 782 (1303)
..|||+||.+||.+|++ .++|+..++++..++++-+..+|+|++|.|||+|..|||||||||+||||++++
T Consensus 434 ~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DE 513 (591)
T KOG0057|consen 434 SVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDE 513 (591)
T ss_pred ccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecC
Confidence 99999999999999997 578899999999999999999999999999999999999999999999997542
Q ss_pred ---------------HHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhcchHHHHHHHH
Q 000746 783 ---------------CIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLMEN 839 (1303)
Q Consensus 783 ---------------~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~~ 839 (1303)
.+.+...+||+|+|.||+++++++|+|+++++|++.+.|+|+||++.++.|.+++..
T Consensus 514 aTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~~s~~~~~~w~~ 585 (591)
T KOG0057|consen 514 ATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAPSELYADLWTT 585 (591)
T ss_pred cccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhhhhhHHHHHhcc
Confidence 244566899999999999999999999999999999999999999988888888753
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-55 Score=593.36 Aligned_cols=445 Identities=20% Similarity=0.223 Sum_probs=341.5
Q ss_pred HHHHHHHHHHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 397 RLRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQ-QLHGLWSAPFRITLSMVLLYQQLGVASLLGSLM 475 (1303)
Q Consensus 397 ~lr~~L~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~-~~~~~~~~~~~i~~~~~~l~~~lg~~~l~~~~~ 475 (1303)
+....+...+|++.++.+...+++.++|+++|++++|++.+++.+. .+..++...+.++.+++++....++..++.+.+
T Consensus 1028 ~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~~p~~~~~~i~~ 1107 (1560)
T PTZ00243 1028 RGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSASQPFVLVALVPC 1107 (1560)
T ss_pred HHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345667788999999999999999999999999999999998643 344455555555544444333322222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 476 LVLMVPLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFI 555 (1303)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~ 555 (1303)
.++...+..++.+..++.++......++..+.++|.++|+++||+|++|+.+.+++.+..+...+..........+....
T Consensus 1108 ~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~~~ 1187 (1560)
T PTZ00243 1108 GYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVR 1187 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222233445555666667677778888999999999999999999999999998777666555444433333443333
Q ss_pred HHHHhHHh--HHhhhhhhh--hhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-C-
Q 000746 556 LNSIPVVV--TVVSFGTFT--LLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERIL-M- 629 (1303)
Q Consensus 556 ~~~~~~~~--~~~~f~~~~--~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~-~- 629 (1303)
......++ .++.++++. ...+.++++.+..++.+...+..|+..+...+..+..++.|++|+.++++..+... .
T Consensus 1188 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~ 1267 (1560)
T PTZ00243 1188 VEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPE 1267 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence 22221111 111222222 22345788888888888888999999999999999999999999999996322110 0
Q ss_pred -------------------------C-CC----CCCCCCCcEEEEeeEEEeCCCC-CccceeeeEecCCcEEEEEcCCCC
Q 000746 630 -------------------------P-NP----PLEPELPAVSIKNGNFSWDSKS-PTLSNINLDIPVGSLVAIVGGTGE 678 (1303)
Q Consensus 630 -------------------------~-~~----~~~~~~~~i~~~~~~f~~~~~~-~~L~~i~l~i~~G~~~~ivG~sGs 678 (1303)
+ .+ +..+..+.|+|+||+|+|+++. ++|+|+||+|++||+++|||+|||
T Consensus 1268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGS 1347 (1560)
T PTZ00243 1268 LDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGS 1347 (1560)
T ss_pred ccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCC
Confidence 0 00 0111234699999999997654 599999999999999999999999
Q ss_pred ChHHHHHHHhcCCCCCCCceEE------------EcCeEEEEccCcccccccHHHHHccCCCCChhhHHHHHHHHhhHHH
Q 000746 679 GKTSLVSAMLGELPPLKDASVV------------IRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHD 746 (1303)
Q Consensus 679 GKSTLl~~llg~~~~~~g~~~~------------~~~~iayv~Q~p~l~~~TireNI~~g~~~~~~~~~~vl~~~~l~~~ 746 (1303)
|||||+++|+|+++|.+|.+.. +|++|+||||+|.||+|||||||..+.++++++++++++.|+++++
T Consensus 1348 GKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~ 1427 (1560)
T PTZ00243 1348 GKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRER 1427 (1560)
T ss_pred CHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChHH
Confidence 9999999999999999875421 3568999999999999999999998888999999999999999999
Q ss_pred hhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH------------------------HHHhHhcCCCEEEEEecCCCc
Q 000746 747 LDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN------------------------SCIKEELRGKTRILVTNQLHF 802 (1303)
Q Consensus 747 i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~------------------------~~i~~~~~~~TvilvtH~~~~ 802 (1303)
++.+|+|+||.|||+|.|||||||||||||||+++ +.+++..+++|+|+||||+++
T Consensus 1428 I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~t 1507 (1560)
T PTZ00243 1428 VASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHT 1507 (1560)
T ss_pred HhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHH
Confidence 99999999999999999999999999999999874 234455689999999999999
Q ss_pred ccccCEEEEEeCCEEEEecCHHHHHhc-chHHHHHHHHhc
Q 000746 803 LPHVDRIILVSEGMIKEEGSFEELSKH-GRLFQKLMENAG 841 (1303)
Q Consensus 803 l~~aD~ii~l~~G~i~~~g~~~~l~~~-~~~~~~l~~~~~ 841 (1303)
+..||+|++|++|+|+|.|+|+||+++ ++.|+++++..+
T Consensus 1508 i~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~~ 1547 (1560)
T PTZ00243 1508 VAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALG 1547 (1560)
T ss_pred HHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhC
Confidence 999999999999999999999999974 789999987654
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-55 Score=595.44 Aligned_cols=449 Identities=19% Similarity=0.255 Sum_probs=334.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 392 WRVGFRLRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQ-QLHGLWSAPFRITLSMVLLYQQLGVASL 470 (1303)
Q Consensus 392 ~~~~~~lr~~L~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~-~~~~~~~~~~~i~~~~~~l~~~lg~~~l 470 (1303)
.+.+.+.-..++..++++.++.+...+++.++|+++|++++|++.+++.+. .+..+....+.++.+++++.....+..+
T Consensus 975 ~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~ 1054 (1495)
T PLN03232 975 ISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTISLW 1054 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777788999999999999999999999999999999998644 3444444444444443333222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 471 LGSLMLVLMVPLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSA 550 (1303)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~ 550 (1303)
+.+.+.+++..+..+..+..++.++.....+++..+.++|.++|+++||+|++|+.+.++.++..+...+..........
T Consensus 1055 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1134 (1495)
T PLN03232 1055 AIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSSNR 1134 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111222223333444556666677778888999999999999999999999888777666655544333222333
Q ss_pred HHHHHHHHHhHHhHHhhhhhhhhh-CCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 551 FNSFILNSIPVVVTVVSFGTFTLL-GGDLT-----PARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAE 624 (1303)
Q Consensus 551 ~~~~~~~~~~~~~~~~~f~~~~~~-~~~l~-----~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~ 624 (1303)
+..........++ +...+.+.+. .+.+. ++.+...+++...+..|+..+...+..+..+.+|.+|+.++++.+
T Consensus 1135 wl~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~ 1213 (1495)
T PLN03232 1135 WLTIRLETLGGVM-IWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLP 1213 (1495)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3322222211111 1111222222 23221 222333455666677889999999999999999999999999765
Q ss_pred hhhcC--C--C-CCCCCCCCcEEEEeeEEEeCCC-CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCce
Q 000746 625 ERILM--P--N-PPLEPELPAVSIKNGNFSWDSK-SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDAS 698 (1303)
Q Consensus 625 ~~~~~--~--~-~~~~~~~~~i~~~~~~f~~~~~-~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~ 698 (1303)
++... + . ++.++..+.|+++|++|+|+++ +++|+|+||+|++||+++|||+||||||||+++|+|+++|++|.+
T Consensus 1214 ~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I 1293 (1495)
T PLN03232 1214 SEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRI 1293 (1495)
T ss_pred ccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceE
Confidence 43211 1 1 1112334579999999999654 579999999999999999999999999999999999999999754
Q ss_pred EE------------EcCeEEEEccCcccccccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCc
Q 000746 699 VV------------IRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNIS 766 (1303)
Q Consensus 699 ~~------------~~~~iayv~Q~p~l~~~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LS 766 (1303)
.. +|++|+||||+|.||+|||||||.+++++++++++++++.|+++++++.+|+|+||.|||+|.+||
T Consensus 1294 ~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LS 1373 (1495)
T PLN03232 1294 MIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFS 1373 (1495)
T ss_pred EECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCC
Confidence 21 356899999999999999999999998999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCH
Q 000746 767 GGQKQRVSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSF 823 (1303)
Q Consensus 767 GGQkQRiaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~ 823 (1303)
||||||||||||+++ +.+++..+++|+|+||||++++..||+|++|++|+|+|.|+|
T Consensus 1374 gGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~ 1453 (1495)
T PLN03232 1374 VGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSP 1453 (1495)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999653 456666789999999999999999999999999999999999
Q ss_pred HHHHhcc-hHHHHHHHHhc
Q 000746 824 EELSKHG-RLFQKLMENAG 841 (1303)
Q Consensus 824 ~~l~~~~-~~~~~l~~~~~ 841 (1303)
+||++++ +.|+++++.++
T Consensus 1454 ~eLl~~~~~~f~~l~~~~~ 1472 (1495)
T PLN03232 1454 QELLSRDTSAFFRMVHSTG 1472 (1495)
T ss_pred HHHHhCCCCHHHHHHHHhC
Confidence 9999876 58999987654
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-57 Score=501.45 Aligned_cols=505 Identities=21% Similarity=0.326 Sum_probs=360.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc--hHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 332 GGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPA--WIGYIYAFLIFVGV---SFGVLTEAQYFQNVWRVGFRLRSTLVAAI 406 (1303)
Q Consensus 332 ~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~lr~~L~~~i 406 (1303)
..++.++.-++....|.+.+.+++.+..+... +..+.+.++-++-- .-+.+...+.+ .+.++..-.-..+-..+
T Consensus 220 cl~ll~i~rli~~~~pi~~k~iv~~ltap~~~~~~~~~~~v~L~flqg~gtgsG~~~nlRtf-LWi~VqQyttR~ie~~l 298 (790)
T KOG0056|consen 220 CLFLLIIGRLINVSLPILSKWIVDELTAPDTFQYSLVFLYVFLKFLQGGGTGSGFLNNLRTF-LWIPVQQYTTREIETEL 298 (790)
T ss_pred HHHHHHHHHHHhhhhHHhHHHHHHhhcCcchhhHHHHHHHHHHHHHhcCCccccchhhhhee-EEEEhhHhHHHHHHHHH
Confidence 34444555566777899999999988743321 11222222222110 00111111110 11123333334455678
Q ss_pred HHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Q 000746 407 FRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQ-LHGLWSAPFRITLSMVLLYQQLGVASLLGSLMLVLMV---PL 482 (1303)
Q Consensus 407 ~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~-~~~~~~~~~~i~~~~~~l~~~lg~~~l~~~~~~~~~~---~~ 482 (1303)
|+|...++....-+..+|+++..|....+.+. +..+ +..+....+.+++++++++....+ +.|+++++.+. -+
T Consensus 299 frHlh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~Fn~--wFgLIVfl~m~lY~~~ 375 (790)
T KOG0056|consen 299 FRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIKFNI--WFGLIVFLMMLLYCYV 375 (790)
T ss_pred HHHHHhhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhhHhH--HHHHHHHHHHHHHhhe
Confidence 88888888887778889999998887766665 3333 233334445566665544433322 22332222111 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-
Q 000746 483 QTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSIPV- 561 (1303)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~- 561 (1303)
...+...-.+++++...+-.+..+.-.+.+-+.+++|.|+.|+...+++.+.-.+..+.-+|......+.+...+.+-.
T Consensus 376 Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~l 455 (790)
T KOG0056|consen 376 TIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGL 455 (790)
T ss_pred eeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 1112222233444443333333445568899999999999999988888776665555444443332332222222111
Q ss_pred -HhHHhhhhhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-CC-CCCCCCC
Q 000746 562 -VVTVVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILM-PN-PPLEPEL 638 (1303)
Q Consensus 562 -~~~~~~f~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~-~~-~~~~~~~ 638 (1303)
+.....+.+|.+..+.+++|.......++..+..|++.+...+..++...+-.+|+.++++++++..+ |. +|.....
T Consensus 456 gll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~pl~~~~ 535 (790)
T KOG0056|consen 456 GLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAPPLKVTQ 535 (790)
T ss_pred HHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCCCCCccccC
Confidence 11112234566667889999988888899999999999999999999999999999999987765432 21 2333456
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------EcCeEE
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------IRGTVA 706 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------~~~~ia 706 (1303)
+.|+|+||+|.|++++|+|+||||+++||+.+|+|||||+||||++++|.++++..+|.+.. +|++||
T Consensus 536 G~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IG 615 (790)
T KOG0056|consen 536 GKIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIG 615 (790)
T ss_pred CeEEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcC
Confidence 78999999999999999999999999999999999999999999999999999999875421 466899
Q ss_pred EEccCcccccccHHHHHccCCC-CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH----
Q 000746 707 YVPQISWIFNATLRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN---- 781 (1303)
Q Consensus 707 yv~Q~p~l~~~TireNI~~g~~-~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~---- 781 (1303)
.||||..|||+||..||.++++ .++|++.++.++++.++.|-.+|+|++|.|||+|..||||+|||+|+||++++
T Consensus 616 VVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~i 695 (790)
T KOG0056|consen 616 VVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSI 695 (790)
T ss_pred cccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcE
Confidence 9999999999999999999997 57888899999999999999999999999999999999999999999999753
Q ss_pred -------------------HHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhc-chHHHHHHHHh
Q 000746 782 -------------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKH-GRLFQKLMENA 840 (1303)
Q Consensus 782 -------------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~-~~~~~~l~~~~ 840 (1303)
.++.+...++|.|+|+||++++-+||.|+++++|+|+|.|+|+||.++ +|.|+++.+.+
T Consensus 696 IlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Ya~MWq~q 774 (790)
T KOG0056|consen 696 ILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYADMWQAQ 774 (790)
T ss_pred EEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCcHHHHHHHH
Confidence 344555689999999999999999999999999999999999999987 89999998644
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-55 Score=557.75 Aligned_cols=446 Identities=22% Similarity=0.288 Sum_probs=367.1
Q ss_pred HHHHHHHHHHHHHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 394 VGFRLRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQ-QLHGLWSAPFRITLSMVLLYQQLGVASLLG 472 (1303)
Q Consensus 394 ~~~~lr~~L~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~-~~~~~~~~~~~i~~~~~~l~~~lg~~~l~~ 472 (1303)
.+.+.-..|...++++.++-|...++.+++|+|+||++.|++.+++-+. .+..+....++++..+.++.....+..++.
T Consensus 885 ~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~ 964 (1381)
T KOG0054|consen 885 GGLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAI 964 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHH
Confidence 3444445555556666677777778889999999999999999998544 445555666666666555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 473 SLMLVLMVPLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFN 552 (1303)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~ 552 (1303)
+.+.++++.++.++.+..++..+-....++.-.++++|.++|+.+||+|+.|++|.++..+..+...+..........|.
T Consensus 965 ~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWl 1044 (1381)
T KOG0054|consen 965 IPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWL 1044 (1381)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 66666666677777777888888888889999999999999999999999999999999988888777766666666666
Q ss_pred HHHHHHHhHHhHHhhhhhhhhhCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---c
Q 000746 553 SFILNSIPVVVTVVSFGTFTLLGGD-LTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERI---L 628 (1303)
Q Consensus 553 ~~~~~~~~~~~~~~~f~~~~~~~~~-l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~---~ 628 (1303)
.+-...+..++.+.+....++..+. .++|.+-.++++...+..-++.+......+....+|.+||.+|.+.+++. .
T Consensus 1045 a~Rle~ig~~~v~~~al~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~ 1124 (1381)
T KOG0054|consen 1045 AVRLELLGNLVVLIAALFAVLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEI 1124 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCC
Confidence 6655555443322222222222222 77999999999999999999999999999999999999999999865441 1
Q ss_pred CC--CCCCCCCCCcEEEEeeEEEeCCC-CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-----
Q 000746 629 MP--NPPLEPELPAVSIKNGNFSWDSK-SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----- 700 (1303)
Q Consensus 629 ~~--~~~~~~~~~~i~~~~~~f~~~~~-~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----- 700 (1303)
.. .|+.+|..+.|+|+|++.+|.++ +++|+||||+|++||+++|||++|||||||+++|.|+.+|.+|.+..
T Consensus 1125 ~~~~pp~~WP~~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI 1204 (1381)
T KOG0054|consen 1125 EESRPPPSWPSKGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDI 1204 (1381)
T ss_pred cCCCCCCCCCCCCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeec
Confidence 11 24567888899999999999766 57999999999999999999999999999999999999998875432
Q ss_pred -------EcCeEEEEccCcccccccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHH
Q 000746 701 -------IRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRV 773 (1303)
Q Consensus 701 -------~~~~iayv~Q~p~l~~~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRi 773 (1303)
+|++++.+||||.||+||+|.|+....+++|+++|++++.|+|.+.++.+|+|+|++|.|+|.|+|-||||.+
T Consensus 1205 ~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLl 1284 (1381)
T KOG0054|consen 1205 SKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLL 1284 (1381)
T ss_pred ccccHHHHHhcCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHH
Confidence 4779999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-----------------------HHHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhc-
Q 000746 774 SMARAVF-----------------------NSCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKH- 829 (1303)
Q Consensus 774 aLARAl~-----------------------~~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~- 829 (1303)
|||||++ ++.|++.++++|||.|+||++++.++|||+|||+|+|+|.|+|++|+++
T Consensus 1285 CLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~~ 1364 (1381)
T KOG0054|consen 1285 CLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLSDK 1364 (1381)
T ss_pred HHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHHHHhCC
Confidence 9999954 4668889999999999999999999999999999999999999999976
Q ss_pred chHHHHHHHH
Q 000746 830 GRLFQKLMEN 839 (1303)
Q Consensus 830 ~~~~~~l~~~ 839 (1303)
++.|.+++.+
T Consensus 1365 ~S~f~~~l~~ 1374 (1381)
T KOG0054|consen 1365 DSLFSSLLKE 1374 (1381)
T ss_pred cchHHHHHHH
Confidence 5666655543
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-54 Score=484.38 Aligned_cols=503 Identities=24% Similarity=0.338 Sum_probs=386.4
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 316 WLLRALNNSFGGRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPAWIGYIYAFLIFVGVSFGVLTEAQYFQNVWRVG 395 (1303)
Q Consensus 316 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (1303)
....+....++..|+..++++.+.+++.+..|+++-++.|.+-...+...-..+.++.....++..+....--....|++
T Consensus 12 ~~~~a~l~~~r~a~~~v~lfS~~INiL~L~~~lyMLQVyDRVL~S~s~~TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig 91 (580)
T COG4618 12 NLLAAVLAANRRAFIGVGLFSAVINLLALTGPLYMLQVYDRVLPSRSVPTLVMLTVLALGLYAFQGLLDAIRSRVLVRIG 91 (580)
T ss_pred chhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777888888999999999999999999999998865443221122222111111222222222223356889
Q ss_pred HHHHHHHHHHHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHHH--HHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 000746 396 FRLRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQ--LHGLWS---APFRITLSMVLLYQQLGVASL 470 (1303)
Q Consensus 396 ~~lr~~L~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~--~~~~~~---~~~~i~~~~~~l~~~lg~~~l 470 (1303)
.++...|...+|...++.+..........+. -+|.+++.++... ...++. .|+.+ ..++++...+|+.++
T Consensus 92 ~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~----LrDL~qvR~Fltg~g~~A~fDaPW~P~yl-~v~fl~Hp~lG~~a~ 166 (580)
T COG4618 92 ERLDRQLNGPVFAASFSAPLLRRGSGDGLQP----LRDLDQVRQFLTGTGLTAFFDAPWMPLYL-AVIFLFHPWLGLIAL 166 (580)
T ss_pred HHHHHHhccHHHHHHHhhHHhhcCCCccccc----hhhHHHHHHHHcCCCcchhcCCchHHHHH-HHHHHHHHHHHHHHH
Confidence 9999999999999887554432211222222 3788888887532 222333 34433 345667778999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 471 LGSLMLVLMVPLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSA 550 (1303)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~ 550 (1303)
+|.++++.+..++-... ++-.++..+...++....+...++.++|+++|+.....+++.+.....++...+..-...
T Consensus 167 ~ga~iLv~la~ln~~~t---~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~ 243 (580)
T COG4618 167 AGAIILVVLALLNERAT---RKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNG 243 (580)
T ss_pred HHHHHHHHHHHHHHHHh---hccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 98888877766655444 344456667778888999999999999999999999999999888877776665554444
Q ss_pred HHHHHHHHHhHH--hHHhhhhhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 000746 551 FNSFILNSIPVV--VTVVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERIL 628 (1303)
Q Consensus 551 ~~~~~~~~~~~~--~~~~~f~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~ 628 (1303)
..+......-++ ..++..|+|+++.+++|+|.+++.-.+......|+......+.++..++.|.+|++++|...+...
T Consensus 244 ~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~ 323 (580)
T COG4618 244 AFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAA 323 (580)
T ss_pred HHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 433333332222 346778899999999999999999888889999999999999999999999999999998654322
Q ss_pred CCCCCCCCCCCcEEEEeeEEEeCCCC-CccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE------
Q 000746 629 MPNPPLEPELPAVSIKNGNFSWDSKS-PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI------ 701 (1303)
Q Consensus 629 ~~~~~~~~~~~~i~~~~~~f~~~~~~-~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~------ 701 (1303)
..- +.....+.+.++++++.-|+.+ |+++|+||++++||-++|+||||||||||.++|.|..+|.+|. +.+
T Consensus 324 ~~m-~LP~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~-VRLDga~l~ 401 (580)
T COG4618 324 ERM-PLPAPQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGS-VRLDGADLR 401 (580)
T ss_pred CCC-CCCCCCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCc-EEecchhhh
Confidence 111 1122346799999999876554 8999999999999999999999999999999999999999975 433
Q ss_pred -------cCeEEEEccCcccccccHHHHHc-cCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHH
Q 000746 702 -------RGTVAYVPQISWIFNATLRKNIL-FGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRV 773 (1303)
Q Consensus 702 -------~~~iayv~Q~p~l~~~TireNI~-~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRi 773 (1303)
.++|||.||+-.||+|||+|||. |+.+.|++++-++.+.++.+|-|-.+|+||||.|||+|..|||||||||
T Consensus 402 qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRI 481 (580)
T COG4618 402 QWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRI 481 (580)
T ss_pred cCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHH
Confidence 35799999999999999999998 7778999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-----------------------HHHhH-hcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHh
Q 000746 774 SMARAVFN-----------------------SCIKE-ELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 774 aLARAl~~-----------------------~~i~~-~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
+||||+|- ++|.+ ..+|.|+|+||||++.+..+|+|++|+||++...|+-+|..+
T Consensus 482 aLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa 560 (580)
T COG4618 482 ALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLA 560 (580)
T ss_pred HHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHH
Confidence 99999762 12222 237999999999999999999999999999999999998875
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-53 Score=570.84 Aligned_cols=448 Identities=16% Similarity=0.214 Sum_probs=341.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 392 WRVGFRLRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQ-QLHGLWSAPFRITLSMVLLYQQLGVASL 470 (1303)
Q Consensus 392 ~~~~~~lr~~L~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~-~~~~~~~~~~~i~~~~~~l~~~lg~~~l 470 (1303)
.+.+.+.-..+...++++.++.+...++..++|+++|++++|++.+++.+. .+..++...+.+++.++++....++..+
T Consensus 950 ~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~l 1029 (1490)
T TIGR01271 950 VHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFI 1029 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777888889999999888899999999999999999998543 3445555555555555444443333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 471 LGSLMLVLMVPLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSA 550 (1303)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~ 550 (1303)
+.+.++++++.+..++.+..++.++.....+++..+.+.|.++|+.+||+||+|+.+.+++.+..+...+..........
T Consensus 1030 ~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1109 (1490)
T TIGR01271 1030 AAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLR 1109 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22223333333445555556666777777888899999999999999999999999999988776654433332222233
Q ss_pred HHHHHHHHHhHHhHHhhhhhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 000746 551 FNSFILNSIPVVVTVVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILMP 630 (1303)
Q Consensus 551 ~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~ 630 (1303)
+.......+..+..+. .+...+.....+++.+..+++++..+..++..+...+..+..+..|.+||.++++.+++...+
T Consensus 1110 wl~~~~~~i~~~~~~~-~~~l~~~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~ 1188 (1490)
T TIGR01271 1110 WFQMRIDIIFVFFFIA-VTFIAIGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRP 1188 (1490)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence 3322222211111100 011111112345566666666777778888888899999999999999999999754432110
Q ss_pred ------------------C-CCCCCCCCcEEEEeeEEEeCCC-CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcC
Q 000746 631 ------------------N-PPLEPELPAVSIKNGNFSWDSK-SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGE 690 (1303)
Q Consensus 631 ------------------~-~~~~~~~~~i~~~~~~f~~~~~-~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~ 690 (1303)
. ++.++..+.|+|+|++|+|+++ +++|+|+||+|++||+++|||+||||||||+++|+|+
T Consensus 1189 ~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl 1268 (1490)
T TIGR01271 1189 SGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRL 1268 (1490)
T ss_pred cccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhh
Confidence 0 1122344679999999999753 5799999999999999999999999999999999999
Q ss_pred CCCCCCceEE------------EcCeEEEEccCcccccccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccc
Q 000746 691 LPPLKDASVV------------IRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEI 758 (1303)
Q Consensus 691 ~~~~~g~~~~------------~~~~iayv~Q~p~l~~~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~i 758 (1303)
++ .+|.+.. +|++|+||||+|.||+|||||||....++++++++++++.|+|.+.++.+|+|+||.|
T Consensus 1269 ~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v 1347 (1490)
T TIGR01271 1269 LS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVL 1347 (1490)
T ss_pred cC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCcccccccc
Confidence 97 5664321 3568999999999999999999998878999999999999999999999999999999
Q ss_pred cCCCCCCchHHHHHHHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCcccccCEEEEEeCC
Q 000746 759 GERGVNISGGQKQRVSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEG 815 (1303)
Q Consensus 759 ge~G~~LSGGQkQRiaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G 815 (1303)
||+|.+||||||||||||||+++ +.+++..+++|+|+||||++++..+|+|++|++|
T Consensus 1348 ~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrIlvL~~G 1427 (1490)
T TIGR01271 1348 VDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGS 1427 (1490)
T ss_pred ccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECC
Confidence 99999999999999999999653 4566677899999999999999999999999999
Q ss_pred EEEEecCHHHHHhcchHHHHHHHHhc
Q 000746 816 MIKEEGSFEELSKHGRLFQKLMENAG 841 (1303)
Q Consensus 816 ~i~~~g~~~~l~~~~~~~~~l~~~~~ 841 (1303)
+|+|.|+|++|.++++.|++++++.+
T Consensus 1428 ~ivE~g~p~~Ll~~~~~f~~l~~~~~ 1453 (1490)
T TIGR01271 1428 SVKQYDSIQKLLNETSLFKQAMSAAD 1453 (1490)
T ss_pred EEEEeCCHHHHHcCCcHHHHHHHHhC
Confidence 99999999999988899999987654
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-49 Score=491.01 Aligned_cols=485 Identities=14% Similarity=0.121 Sum_probs=339.3
Q ss_pred HHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 321 LNN-SFGGRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPAWIGYIYAFLIFVGVSFGVLTEAQYFQNVWRVGFRLR 399 (1303)
Q Consensus 321 l~~-~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 399 (1303)
+++ .+++.++.++++.++..++..+.|.+++.+++....... .....++++..+..++. . ...| ...+.+.++.
T Consensus 11 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~-~-~~~~--~~~~~~~~~~ 85 (555)
T TIGR01194 11 LLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFLGQ-GSLFSFGGLCLLALLFR-I-GADI--FPAYAGMHII 85 (555)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc-hHHHHHHHHHHHHHHHH-H-HHHH--HHHHHHHHHH
Confidence 455 677778888888888889999999999988764211111 11111111111111111 1 1112 2346778888
Q ss_pred HHHHHHHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 400 STLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQLHGLWSAPFRITLSMVLLYQQLGVASLLGSLMLVLM 479 (1303)
Q Consensus 400 ~~L~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~~~~~~~~~~i~~~~~~l~~~lg~~~l~~~~~~~~~ 479 (1303)
..++..+|+|.++++...+++.++|++++++++|++.+++....+..++...+.+++++++++..-+..+++.++.+++.
T Consensus 86 ~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~li~l~~~~~~ 165 (555)
T TIGR01194 86 ANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFIFPPIAIALAIFFFCIAYLAYLSVPMFAITISAIIIG 165 (555)
T ss_pred HHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 89999999999999998888899999999999999999987654444444444444444433332222222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 480 VPLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEK--SFQSRVQSIRDDELSWFRKAQFLSAFNSFILN 557 (1303)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~--~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~ 557 (1303)
+.+..+..++.++..++..+..++..+.+.|.++|++++|.++.++ ...+++++..++..+...+..........+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (555)
T TIGR01194 166 TAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFIAAENFGQ 245 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223344455666666777778888999999999999999999954 34455554444333322222222211111111
Q ss_pred HHhHHhH--HhhhhhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cC---CC
Q 000746 558 SIPVVVT--VVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERI-LM---PN 631 (1303)
Q Consensus 558 ~~~~~~~--~~~f~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~-~~---~~ 631 (1303)
....+.. .+.++.+ .+.++.+.+++.+.+...+..|+..+...+..+.++.+|++|+.++++.++.. .. +.
T Consensus 246 ~~~~~~~~~~~~~~~~---~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~ 322 (555)
T TIGR01194 246 LLFFLLIGCALFAAAM---FASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSD 322 (555)
T ss_pred HHHHHHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccc
Confidence 1111111 1111111 26799999999999999999999999999999999999999999998642211 00 00
Q ss_pred C------CCCCCCCcEEEEeeEEEeCCC----CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-
Q 000746 632 P------PLEPELPAVSIKNGNFSWDSK----SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV- 700 (1303)
Q Consensus 632 ~------~~~~~~~~i~~~~~~f~~~~~----~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~- 700 (1303)
. +.......|+++|++|+|+++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+..
T Consensus 323 ~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~ 402 (555)
T TIGR01194 323 ADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLD 402 (555)
T ss_pred cccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEC
Confidence 0 001123469999999999753 36999999999999999999999999999999999999999985321
Q ss_pred -----------EcCeEEEEccCcccccccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHH
Q 000746 701 -----------IRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQ 769 (1303)
Q Consensus 701 -----------~~~~iayv~Q~p~l~~~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQ 769 (1303)
+++.++||+|+|++|++|+++|+ ..+.++++.+++++.++++++++.+|+|++|. .+|||||
T Consensus 403 g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~--~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-----~~LSgGq 475 (555)
T TIGR01194 403 GAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE--GEHASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TALSTGQ 475 (555)
T ss_pred CEECCCCCHHHHHhhCcEEccChhhhhhhhhccc--ccchhHHHHHHHHHHcCCchhhcccccccCCc-----ccCCHHH
Confidence 23569999999999999999995 23467888999999999999999999999994 7899999
Q ss_pred HHHHHHHHHHHH-----------------------HHHh-Hh-cCCCEEEEEecCCCcccccCEEEEEeCCEEEEe
Q 000746 770 KQRVSMARAVFN-----------------------SCIK-EE-LRGKTRILVTNQLHFLPHVDRIILVSEGMIKEE 820 (1303)
Q Consensus 770 kQRiaLARAl~~-----------------------~~i~-~~-~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~ 820 (1303)
||||+||||++. +.+. .. .+++|+|+||||++.+..||+|++|++|++++.
T Consensus 476 ~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 476 QKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 999999999653 1222 22 358999999999999999999999999999874
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-50 Score=439.53 Aligned_cols=440 Identities=25% Similarity=0.364 Sum_probs=338.7
Q ss_pred HHHHHHHHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 399 RSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQ-LHGLWSAPFRITLSMVLLYQQLGVASLLGSLMLV 477 (1303)
Q Consensus 399 r~~L~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~-~~~~~~~~~~i~~~~~~l~~~lg~~~l~~~~~~~ 477 (1303)
-..+....|.+..+++.....+..+|.+..-+....+.|+.+..+ +..+....+++.+..+++|+..|+......++.+
T Consensus 14 ~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~~f~~~t~vtv 93 (497)
T COG5265 14 VRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGWWFALTTLVTV 93 (497)
T ss_pred HHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccHHHHHHHHHH
Confidence 344455667788888777666667777665555555566665543 3344556678888888888888776544444444
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 478 LMVPLQTFIISKMRK-LTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFIL 556 (1303)
Q Consensus 478 ~~~~~~~~~~~~~~~-~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~ 556 (1303)
+++.+..+...-.+. ..++..++..+......+.|-+..++|.||-|+.+..++.+..+...+...+......+.++..
T Consensus 94 ~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~~Sl~~Ln~gQ 173 (497)
T COG5265 94 ILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLVLNFGQ 173 (497)
T ss_pred HHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHhh
Confidence 444333222222222 2333344444455667799999999999999999999998777765554444433333333222
Q ss_pred HHHh--HHhHHhhhhhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-CC-C
Q 000746 557 NSIP--VVVTVVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILM-PN-P 632 (1303)
Q Consensus 557 ~~~~--~~~~~~~f~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~-~~-~ 632 (1303)
..+- .+....+.+...+..+.+|.|.....-++...+..|+..+...+..+.+++.-.+++.+.++.+.+..+ ++ +
T Consensus 174 ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~d~pda~ 253 (497)
T COG5265 174 TAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDAPDAP 253 (497)
T ss_pred HHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhccCCCCc
Confidence 2111 111223334455567899999999999999999999999999999999999999999999886654322 11 2
Q ss_pred CCC-CCCCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-----------
Q 000746 633 PLE-PELPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----------- 700 (1303)
Q Consensus 633 ~~~-~~~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----------- 700 (1303)
+.. -..+.+.|+|++|.|.++.++|+++||++++|++++|||++|+||||++++|.++|++.+|.+..
T Consensus 254 ~L~~~~~g~v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~ 333 (497)
T COG5265 254 PLWPVRLGAVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQ 333 (497)
T ss_pred cccccccceEEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHH
Confidence 222 23457999999999999999999999999999999999999999999999999999999985432
Q ss_pred -EcCeEEEEccCcccccccHHHHHccCCC-CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHH
Q 000746 701 -IRGTVAYVPQISWIFNATLRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARA 778 (1303)
Q Consensus 701 -~~~~iayv~Q~p~l~~~TireNI~~g~~-~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARA 778 (1303)
+|+.||.||||..|||+|+..||.+|+| .++++..++.+++++.+.++.+|+|++|.|||+|-.||||||||+|+||+
T Consensus 334 slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ 413 (497)
T COG5265 334 SLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIART 413 (497)
T ss_pred HHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHH
Confidence 3456999999999999999999999997 67899999999999999999999999999999999999999999999999
Q ss_pred HHH-----------------------HHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhcchHHHH
Q 000746 779 VFN-----------------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQK 835 (1303)
Q Consensus 779 l~~-----------------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~~~~~~ 835 (1303)
+++ ..+++..+|+|.++|+||++++..||.|+||++|+|+|.|+|+||++.+|.|++
T Consensus 414 ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll~~~g~ya~ 493 (497)
T COG5265 414 ILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAAGGLYAE 493 (497)
T ss_pred HhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHHHcCChHHH
Confidence 753 234555689999999999999999999999999999999999999999999998
Q ss_pred HHH
Q 000746 836 LME 838 (1303)
Q Consensus 836 l~~ 838 (1303)
++.
T Consensus 494 mw~ 496 (497)
T COG5265 494 MWR 496 (497)
T ss_pred Hhc
Confidence 863
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-47 Score=475.89 Aligned_cols=485 Identities=18% Similarity=0.208 Sum_probs=326.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 317 LLRALNNSFGGRFWLGGLFKIGNDLSQFVG-PVLLNHLLQSMQRGDPAWIGYIYAFLIFVGVSFGVLTEAQYFQNVWRVG 395 (1303)
Q Consensus 317 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-p~ll~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (1303)
+++.+++.+++.++...++.++..++.++. |++.+.++|.+... . .....++.++++..++. ....|. ..+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~~-~-~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~ 76 (547)
T PRK10522 3 LLRLVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETADTS-L-LVLPEFLGLLLLLMAVT--LGSQLA--LTTLG 76 (547)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-c-hHHHHHHHHHHHHHHHH--HHHHHH--HHHHH
Confidence 455567778888888888888888888774 67778888865321 1 11111111111111111 111222 23566
Q ss_pred HHHHHHHHHHHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 396 FRLRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQLHGLWSAPFRITLSMVLLYQQLGVASLLGSLM 475 (1303)
Q Consensus 396 ~~lr~~L~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~~~~~~~~~~i~~~~~~l~~~lg~~~l~~~~~ 475 (1303)
.++...++..+|+|.++++...+++.++|++++++++|++.+......+..++...+.+++++++++..-+..+++.+++
T Consensus 77 ~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~~l~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~ 156 (547)
T PRK10522 77 HHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFVRLPELVQGIILTLGSAAYLAWLSPKMLLVTAIW 156 (547)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 77777888899999999999888889999999999999999987655555666666666666555544333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 476 LVLMVPLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYA--WEKSFQSRVQSIRDDELSWFRKAQFLSAFNS 553 (1303)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~--~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~ 553 (1303)
+++.+.+..++.++.++..++.++..++..+.+.|.++|+++++..+ .++.+.+++++..++..+...+.........
T Consensus 157 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (547)
T PRK10522 157 MAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELTLNRERAEYVFENEYEPDAQEYRHHIIRADTFHLSAV 236 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhccHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 33333344566677777777888889999999999999999997332 2234555555544433322222222222111
Q ss_pred HHHHHHhHHhHHhhhhhhhhhCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 000746 554 FILNSIPVVVTVVSFGTFTLLGG---DLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILMP 630 (1303)
Q Consensus 554 ~~~~~~~~~~~~~~f~~~~~~~~---~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~ 630 (1303)
....... .+.++.+.+.++ ..+.+.+.....+...+..|+..+...+..+.++..+.+|+.++++.+++...+
T Consensus 237 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~~ 312 (547)
T PRK10522 237 NWSNIMM----LGAIGLVFYMANSLGWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEFP 312 (547)
T ss_pred HHHHHHH----HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 1111111 111121222211 122222222222233356899999999999999999999999987543321111
Q ss_pred CCCCCCCCCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----------
Q 000746 631 NPPLEPELPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV---------- 700 (1303)
Q Consensus 631 ~~~~~~~~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~---------- 700 (1303)
.+...+..+.++++|++|+|++++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.+..
T Consensus 313 ~~~~~~~~~~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~ 392 (547)
T PRK10522 313 RPQAFPDWQTLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQP 392 (547)
T ss_pred cccccCcCceEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCH
Confidence 1111112246999999999986567999999999999999999999999999999999999999974321
Q ss_pred --EcCeEEEEccCcccccccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHH
Q 000746 701 --IRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARA 778 (1303)
Q Consensus 701 --~~~~iayv~Q~p~l~~~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARA 778 (1303)
++++|+|++|+|++|++|++|| +.+.++++.+++++.+++.++++. ++|. .+|.+||||||||++||||
T Consensus 393 ~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~~-~~~~-----~~G~~LSgGq~qRl~lARa 463 (547)
T PRK10522 393 EDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKLEL-EDGR-----ISNLKLSKGQKKRLALLLA 463 (547)
T ss_pred HHHhhheEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhhhc-cccC-----CCCCCCCHHHHHHHHHHHH
Confidence 2457999999999999999999 455677778888887777666542 3332 2488999999999999999
Q ss_pred HHH-----------------------HHHhHhc--CCCEEEEEecCCCcccccCEEEEEeCCEEEEe
Q 000746 779 VFN-----------------------SCIKEEL--RGKTRILVTNQLHFLPHVDRIILVSEGMIKEE 820 (1303)
Q Consensus 779 l~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~ 820 (1303)
+++ +.+.+.. +++|+|+||||++.++.||+|++|++|+++|.
T Consensus 464 l~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 464 LAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEe
Confidence 653 2233333 48999999999999999999999999999976
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-44 Score=454.02 Aligned_cols=479 Identities=16% Similarity=0.156 Sum_probs=339.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHH--HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 328 RFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPAWIG--YIYAFLIFV-GVSFGVLTEAQYFQNVWRVGFRLRSTLVA 404 (1303)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~lr~~L~~ 404 (1303)
.++...++.++..++....|.+.+.+++.+..++..... .+..+++++ ..++.. ...|. ..+...++|..+..
T Consensus 97 ~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~--~~~~~--~~~~~~~~r~~l~~ 172 (659)
T TIGR00954 97 LLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINS--AIKYL--LKELKLRFRVRLTR 172 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH--HHHHH--HHHHHHHHHHHHHH
Confidence 456677778888889999999999999987654321111 111111111 111111 11222 23445566666666
Q ss_pred HHHHHHHcC----CcccccCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 000746 405 AIFRKTLRL----THEARKGFPSGKVTNMITTDANALQQISQ-QLHGLWSAPFRITLSMVLLYQQLGVASLL-GSLMLVL 478 (1303)
Q Consensus 405 ~i~~k~l~l----~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~-~~~~~~~~~~~i~~~~~~l~~~lg~~~l~-~~~~~~~ 478 (1303)
.+.++.++. +....++ .+|++.+++++|++.+.+... .+..+...++.++++++.++..+++...+ .++.+.+
T Consensus 173 ~l~~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l 251 (659)
T TIGR00954 173 YLYSKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFA 251 (659)
T ss_pred HHHHHHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 666665553 2222233 579999999999999988643 45566666777776777666545543322 2222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 479 MVPLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNS 558 (1303)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~ 558 (1303)
...+..++.++..+..++..+..++..+...|.++|+++||.|+.|+.+.+++++..++..+...+..........+...
T Consensus 252 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 331 (659)
T TIGR00954 252 TGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNI 331 (659)
T ss_pred HHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 33344667777888888888888999999999999999999999999999998887777666666655555544443332
Q ss_pred Hh----HHhHHhhhhhhhhh-C----CCCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000746 559 IP----VVVTVVSFGTFTLL-G----GDLTPARAFTS----LSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEE 625 (1303)
Q Consensus 559 ~~----~~~~~~~f~~~~~~-~----~~l~~~~~f~~----l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~ 625 (1303)
.. ..+..+..+...+. . +.++.+..+.. ..++..+..|+..+...+..+.++.++.+|+.++++.++
T Consensus 332 i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~ 411 (659)
T TIGR00954 332 VAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLD 411 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 11112222232222 2 67888765442 234566789999999999999999999999999998654
Q ss_pred hhcC-----CC-C-------------------CCCCCCCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCCh
Q 000746 626 RILM-----PN-P-------------------PLEPELPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGK 680 (1303)
Q Consensus 626 ~~~~-----~~-~-------------------~~~~~~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGK 680 (1303)
+... +. + ......+.++++|++|.|++++++|+|+||++++||+++|+|||||||
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGK 491 (659)
T TIGR00954 412 DVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGK 491 (659)
T ss_pred HHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCH
Confidence 3210 00 0 000122459999999999755579999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCceEEE--cCeEEEEccCcccccccHHHHHccCC--------CCChhhHHHHHHHHhhHHHhhcC
Q 000746 681 TSLVSAMLGELPPLKDASVVI--RGTVAYVPQISWIFNATLRKNILFGS--------EFDPAKYWKTVDVSALQHDLDLL 750 (1303)
Q Consensus 681 STLl~~llg~~~~~~g~~~~~--~~~iayv~Q~p~l~~~TireNI~~g~--------~~~~~~~~~vl~~~~l~~~i~~l 750 (1303)
|||+++|+|+++|.+|. +.. +.+++||||+|+++++|++|||.++. +.++++.+++++.+++++.++.
T Consensus 492 STLl~lL~Gl~~~~~G~-i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~- 569 (659)
T TIGR00954 492 SSLFRILGELWPVYGGR-LTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER- 569 (659)
T ss_pred HHHHHHHhCCCCCCCCe-EeecCCCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhh-
Confidence 99999999999998774 433 46799999999999999999999874 2456788899999999988877
Q ss_pred CCCCCccccCCCCCCchHHHHHHHHHHHHHHH-------------------HHhHhc--CCCEEEEEecCCCcccccCEE
Q 000746 751 PDRDLTEIGERGVNISGGQKQRVSMARAVFNS-------------------CIKEEL--RGKTRILVTNQLHFLPHVDRI 809 (1303)
Q Consensus 751 p~g~~T~ige~G~~LSGGQkQRiaLARAl~~~-------------------~i~~~~--~~~TvilvtH~~~~l~~aD~i 809 (1303)
|.|++|..+ .+.+||||||||++||||++.+ .+.+.+ .++|+|+||||++.++.||++
T Consensus 570 ~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~~~tvI~isH~~~~~~~~d~i 648 (659)
T TIGR00954 570 EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLWKYHEYL 648 (659)
T ss_pred cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEeCchHHHHhCCEE
Confidence 999999876 5679999999999999996531 122222 379999999999999999999
Q ss_pred EEEeC
Q 000746 810 ILVSE 814 (1303)
Q Consensus 810 i~l~~ 814 (1303)
++|++
T Consensus 649 l~l~~ 653 (659)
T TIGR00954 649 LYMDG 653 (659)
T ss_pred EEEeC
Confidence 99963
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-44 Score=427.20 Aligned_cols=374 Identities=20% Similarity=0.262 Sum_probs=297.8
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHhhhcccccC-CCC--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 922 IMILFACYLSTEVLRISSSTWLSFWTDQSTS-KNY--NPGFYIAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSML 998 (1303)
Q Consensus 922 ~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~-~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~ 998 (1303)
+...+.+.++.....+..|..++..+|.... ... .......+..++.++..++.+++.+++.+.+.++..++|.++|
T Consensus 149 l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~~~a~~rv~~rlR~~lF 228 (716)
T KOG0058|consen 149 LVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGLLQYAGERVVARLRTDLF 228 (716)
T ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455556677778777666654322 111 1112233455566677788889999999999999999999999
Q ss_pred HHHHcCcccccccCCcchhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 999 NSILRAPMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLILFYAAYLYY 1078 (1303)
Q Consensus 999 ~~ll~~p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~~~~~~~~~~i~~~v~i~~~~~~~~~~~~pl~~~~~~i~~~~ 1078 (1303)
++++++.++|||+|.+|+|+||++.|.+.+.+.++..+...+.+.++.++.+.+|++.+|.+..+.+..+++...+.++|
T Consensus 229 ~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltlv~~i~~P~v~~~~~~y 308 (716)
T KOG0058|consen 229 RSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTLVTLIVVPIVALVAKIY 308 (716)
T ss_pred HHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988888877777777888899
Q ss_pred HHHHHHHHHHhhhccchHHHHHHHHhcChhhHhhcCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 1079 QSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGIMIWL 1158 (1303)
Q Consensus 1079 ~~~~r~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~ 1158 (1303)
.+..|++.+..+++.+..+....|.+++++|||+|+.|+++.++|.+.+++..+...........+.-..++.+.+..+.
T Consensus 309 G~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f~~~~~~~~~~~~~s 388 (716)
T KOG0058|consen 309 GKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYGIFFGSTNLLGNLAVLS 388 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHhHhHHHHHHhHHHHH
Confidence 99999999999999999999999999999999999999999999988887766555443332222222233333333222
Q ss_pred HHHHHHHccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCC
Q 000746 1159 IATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWP 1238 (1303)
Q Consensus 1159 ~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp 1238 (1303)
+..++ ...+..+.+..|.+..++.|...+...+.++...++++.++.+|.+|++|++|.+|..+.. +.. .|. .
T Consensus 389 iL~~G---g~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~--G~~-~p~-~ 461 (716)
T KOG0058|consen 389 ILFYG---GHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLT--GTL-APD-H 461 (716)
T ss_pred HHHhc---cchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCC--Ccc-ccc-c
Confidence 22221 1122233456788999999999999999999999999999999999999999987665432 221 222 5
Q ss_pred CcceEEEEEEEEEeCCC-CCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1239 SSGSIKFEDVVLRYRPE-LPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1239 ~~G~I~f~nVsf~Y~~~-~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
.+|.|||+||+|+|+.. ..|||||+||+|+|||+||+||||||||||+++||+|||||++|+|+
T Consensus 462 ~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~Il 526 (716)
T KOG0058|consen 462 LQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRIL 526 (716)
T ss_pred ccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEE
Confidence 78999999999999543 23799999999999999999999999999999999999999999996
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-38 Score=388.64 Aligned_cols=369 Identities=20% Similarity=0.283 Sum_probs=296.3
Q ss_pred HHHHHHHHHHHHHhhhhHHHhhhcccccCCCC-CchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 924 ILFACYLSTEVLRISSSTWLSFWTDQSTSKNY-NPGFYI-AIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSI 1001 (1303)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~-~~~~~~-~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l 1001 (1303)
-+++..++.+++.+..|+..+..+|....... ....++ ..+++.++...++.+++.+++.+.+.+...++-.++++|+
T Consensus 158 ~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~~~~hl 237 (709)
T COG2274 158 EVLLASLLLQLLALATPLFSQIVIDKVLPDASRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHL 237 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34444555667888889888888887543322 222333 3444556677888999999999999999999999999999
Q ss_pred HcCcccccccCCcchhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 1002 LRAPMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLILFYAAYLYYQST 1081 (1303)
Q Consensus 1002 l~~p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~~~~~~~~~~i~~~v~i~~~~~~~~~~~~pl~~~~~~i~~~~~~~ 1081 (1303)
+++|++||++.++|++++|+ +|++.|.+++.......+..++..+..+++|.+.++.++++.+..++++..+..+..+.
T Consensus 238 l~Lpl~~f~~r~~Ge~~sR~-~el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~ 316 (709)
T COG2274 238 LRLPLSYFEKRSVGEIISRV-RELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPL 316 (709)
T ss_pred HcCcHHHccCCChhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998 78999999999887777777777777777888888887777766666666665566666
Q ss_pred HHHHHHHhhhccchHHHHHHHHhcChhhHhhcCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 000746 1082 AREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGIMIWLI-- 1159 (1303)
Q Consensus 1082 ~r~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~-- 1159 (1303)
.|+..+...+..+..+++..|++.|+.|||+.+.|+++..+.++..++..+..+.......+......++..+..+.+
T Consensus 317 l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL~ 396 (709)
T COG2274 317 LRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILW 396 (709)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666778899999999999999999999999999998888888777776666666666555444333322
Q ss_pred -HHHHHHccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCC
Q 000746 1160 -ATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWP 1238 (1303)
Q Consensus 1160 -~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp 1238 (1303)
+...+..+ ..+.|.+..+.+....+++++..++..+++++....+.+|+.++++.|+|.+.. ..+...|+
T Consensus 397 ~G~~lVl~~------~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~---~~~~~~~~ 467 (709)
T COG2274 397 FGAILVLEG------ELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGD---KTLIHLPK 467 (709)
T ss_pred HHHHHHhcC------CcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc---cccccccc
Confidence 22333322 234677778888888999999999999999999999999999999999886431 11345567
Q ss_pred CcceEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1239 SSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1239 ~~G~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
.+|+|+|+||+|+|+++.+++|+|+||+|+|||+|||||+||||||||+++|.|+|+|++|+|+
T Consensus 468 ~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~ 531 (709)
T COG2274 468 LQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRIL 531 (709)
T ss_pred cCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence 8899999999999998888899999999999999999999999999999999999999999996
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=379.21 Aligned_cols=371 Identities=16% Similarity=0.149 Sum_probs=269.1
Q ss_pred HHHHHHHHHHhhhhHHHhhhcccccCCCCCchHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 000746 927 ACYLSTEVLRISSSTWLSFWTDQSTSKNYNPGFYIAI--YTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILRA 1004 (1303)
Q Consensus 927 ~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~i--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~ 1004 (1303)
++.++..++.+..++.+++.+|...........+..+ ++++.++..++.++..++....+.++..++|.++|+|++++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~ 99 (529)
T TIGR02868 20 LLGALALGSAVALLGVSAWLISRAAEMPPVLYLSVAAVAVRAFGIGRAVFRYLERLVGHDAALRSLGRLRVRVYDRLARL 99 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3344455566666777776666432211111111111 11233445666777888888899999999999999999999
Q ss_pred cccccccCCcchhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 000746 1005 PMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLILFYAA-YLYYQSTAR 1083 (1303)
Q Consensus 1005 p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~~~~~~~~~~i~~~v~i~~~~~~~~~~~~pl~~~~~~i-~~~~~~~~r 1083 (1303)
|.+||+++++|++++|+++|++.+++.+...+..++..++.+++.++++++.+|.+.++++..++++.++ ..++.+..+
T Consensus 100 ~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~ 179 (529)
T TIGR02868 100 ALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLAAGLLLAGFVAPLVSLRAAR 179 (529)
T ss_pred CccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999988887777777777777777778888887766655443333333 334444445
Q ss_pred HHHHHhhhccchHHHHHHHHhcChhhHhhcCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 1084 EVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGIMIWLIATFA 1163 (1303)
Q Consensus 1084 ~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~ 1163 (1303)
+..+...+..+.+.+++.|+++|+++||+|+.|+++.+++.+..++..+..........+......++..+..+++..++
T Consensus 180 ~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 259 (529)
T TIGR02868 180 AAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAAQLLAAGLAVLGALWAG 259 (529)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555556678899999999999999999999999999998888877776665554444444444443333222222222
Q ss_pred HHccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceE
Q 000746 1164 VMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSGSI 1243 (1303)
Q Consensus 1164 v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~G~I 1243 (1303)
.+.. ..+....|.+..++.++..+..++..+...+..++....+.+|+.++++.++|.+... ...+...+|..++|
T Consensus 260 ~~~~---~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~-~~~~~~~~~~~~~I 335 (529)
T TIGR02868 260 GPAV---ADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGV-VPAAGALGLGKPTL 335 (529)
T ss_pred HHHH---hCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCC-CCCCcccCCCCceE
Confidence 1110 0112345777778888888999999999999999999999999999998766533211 11111123456789
Q ss_pred EEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1244 KFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1244 ~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
+|+||+|+|+++ +++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|+
T Consensus 336 ~~~~vsf~Y~~~-~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~ 393 (529)
T TIGR02868 336 ELRDLSFGYPGS-PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVT 393 (529)
T ss_pred EEEEEEEecCCC-CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence 999999999754 4699999999999999999999999999999999999999999985
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=386.81 Aligned_cols=369 Identities=20% Similarity=0.254 Sum_probs=281.1
Q ss_pred HHHHHHHHHHHHHhhhhHHHhhhcccccCCCCCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 924 ILFACYLSTEVLRISSSTWLSFWTDQSTSKNYNP--GFYIAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSI 1001 (1303)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l 1001 (1303)
..+++.++...+.+..|++.+..+|......... ...+.+++++.++..++.+++.+...+.+.+...++|+++|+++
T Consensus 165 ~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~l~~~l 244 (711)
T TIGR00958 165 SAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINLRIREDLFRSL 244 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566777778888887777543211111 11233344455556667778888888999999999999999999
Q ss_pred HcCcccccccCCcchhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 1002 LRAPMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLILFYAAYLYYQST 1081 (1303)
Q Consensus 1002 l~~p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~~~~~~~~~~i~~~v~i~~~~~~~~~~~~pl~~~~~~i~~~~~~~ 1081 (1303)
+++|++||+++++|+++||+++|++.+++.+...+..++..++.+++.+++++..+|.+.++++...++..++..++.+.
T Consensus 245 l~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l~~~~l~~~~~~~~~~~ 324 (711)
T TIGR00958 245 LRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKR 324 (711)
T ss_pred HcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998888888888888888888888888887766665555555666677777
Q ss_pred HHHHHHHhhhccchHHHHHHHHhcChhhHhhcCcHHHHHHHHHHHHHhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 000746 1082 AREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSS---NRWLTIRLETLGGIMIWL 1158 (1303)
Q Consensus 1082 ~r~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~~~~~~~~~~d~~~~~~~~~~~~---~~wl~~~l~~~~~~~~~~ 1158 (1303)
.++..+...+..+..++++.|+++|+++||+|+.|+++.+++.+..++..+........ ..|....+..+..++++.
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 404 (711)
T TIGR00958 325 YQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLY 404 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777788899999999999999999999999999888887766554433222 223222222222222222
Q ss_pred HHHHHHHccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCC
Q 000746 1159 IATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWP 1238 (1303)
Q Consensus 1159 ~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp 1238 (1303)
.+.+.+.. +....|.+..++.|...+..++..+...+.+++++..+.+|+.++++.+++.+.. .. ...++
T Consensus 405 ~g~~lv~~------g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~--~~--~~~~~ 474 (711)
T TIGR00958 405 YGGQLVLT------GKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLT--GT--LAPLN 474 (711)
T ss_pred HHHHHHHc------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC--CC--CCCCC
Confidence 33222221 1234677888888999999999999999999999999999999999876654321 11 11234
Q ss_pred CcceEEEEEEEEEeCCC-CCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1239 SSGSIKFEDVVLRYRPE-LPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1239 ~~G~I~f~nVsf~Y~~~-~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
.+|+|+|+||+|+|+++ .+++|+|+||+|+|||+|||||+||||||||+++|.|+|+|++|+|+
T Consensus 475 ~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~ 539 (711)
T TIGR00958 475 LEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVL 539 (711)
T ss_pred CCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEE
Confidence 57899999999999743 35799999999999999999999999999999999999999999985
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=378.34 Aligned_cols=367 Identities=16% Similarity=0.213 Sum_probs=274.2
Q ss_pred HHHHHHHHHHHHhhhhHHHhhhcccccCCCCC-c-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 925 LFACYLSTEVLRISSSTWLSFWTDQSTSKNYN-P-GFYIAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSIL 1002 (1303)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~-~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll 1002 (1303)
.+++.++..++.+..|++++.+.|........ . ..+.++++++.++..++.+++.++..+.+.+...++|.++++|++
T Consensus 161 ~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll 240 (708)
T TIGR01193 161 IVIAAIIVTLISIAGSYYLQKIIDTYIPHKMMGTLGIISIGLIIAYIIQQILSYIQIFLLNVLGQRLSIDIILSYIKHLF 240 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555667777888888888764322211 1 112223334445566777888888999999999999999999999
Q ss_pred cCcccccccCCcchhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 1003 RAPMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLILFYAAYLYYQSTA 1082 (1303)
Q Consensus 1003 ~~p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~~~~~~~~~~i~~~v~i~~~~~~~~~~~~pl~~~~~~i~~~~~~~~ 1082 (1303)
++|++||+++++|++++|++ |.+.+.+.+.......+..++.++..++++++.+|.++++++..++++.++..++.+..
T Consensus 241 ~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~ 319 (708)
T TIGR01193 241 ELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLLSLLSIPVYAVIIILFKRTF 319 (708)
T ss_pred cCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998 88888887766665656666666666666777777766665555555555566667777
Q ss_pred HHHHHHhhhccchHHHHHHHHhcChhhHhhcCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q 000746 1083 REVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLET---LGGIMIWLI 1159 (1303)
Q Consensus 1083 r~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~---~~~~~~~~~ 1159 (1303)
++..+...+..+...+.+.|+++|+++||+|+.|+++.+++.+..++..+..+.......+......+ +..++++++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~il~~ 399 (708)
T TIGR01193 320 NKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAVTKLILNVVILWT 399 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777778889999999999999999999999999888877776665555443333333322222 222333333
Q ss_pred HHHHHHccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCC
Q 000746 1160 ATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPS 1239 (1303)
Q Consensus 1160 ~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~ 1239 (1303)
+.+.+.. +..+.|.+..+..+...+..++..+...+.+++....+++|+.++++.|+|.+... ...+.++.
T Consensus 400 g~~lv~~------g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~---~~~~~~~~ 470 (708)
T TIGR01193 400 GAYLVMR------GKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKK---KRTELNNL 470 (708)
T ss_pred HHHHHHc------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc---cccCCCCC
Confidence 3333322 12346777788888889999999999999999999999999999998877653211 11123445
Q ss_pred cceEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1240 SGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1240 ~G~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
.|+|+|+||+|+|+++ +++|+|+||+|+|||+|||||+||||||||+++|.|+|+|++|+|+
T Consensus 471 ~~~I~~~~vsf~y~~~-~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~ 532 (708)
T TIGR01193 471 NGDIVINDVSYSYGYG-SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEIL 532 (708)
T ss_pred CCcEEEEEEEEEcCCC-CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEE
Confidence 7899999999999644 5799999999999999999999999999999999999999999986
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-35 Score=364.74 Aligned_cols=371 Identities=17% Similarity=0.173 Sum_probs=268.8
Q ss_pred HHHHHHHHHHHHHhhhhHHHhhhccccc-CCCC---CchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 924 ILFACYLSTEVLRISSSTWLSFWTDQST-SKNY---NPGF--YIAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSM 997 (1303)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~l~~w~~~~~-~~~~---~~~~--~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l 997 (1303)
+.+++.++..++.+..++.+++.+|... .... .... ....+.+++++..++.++..++....+.++..++|.++
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l 99 (574)
T PRK11160 20 LGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVSHDATFRVLTHLRVFT 99 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555666666766666665321 1110 0111 12233344556667788888888999999999999999
Q ss_pred HHHHHcCcccccccCCcchhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 000746 998 LNSILRAPMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLILF-YAAYL 1076 (1303)
Q Consensus 998 ~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~~~~~~~~~~i~~~v~i~~~~~~~~~~~~pl~~~~-~~i~~ 1076 (1303)
|+|++++|++||++.++|++++|+++|++.+++.+...+..++..++..++.++++++.+|.+.++++..+++. .++..
T Consensus 100 ~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~ 179 (574)
T PRK11160 100 FSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLALTLGGILLLLLLLLPL 179 (574)
T ss_pred HHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998888888888888888888888888887766554333322 22334
Q ss_pred HHHHHHHHHHHHhhhccchHHHHHHHHhcChhhHhhcCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 1077 YYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGIMI 1156 (1303)
Q Consensus 1077 ~~~~~~r~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~ 1156 (1303)
++.+..++..+...+..+.+.+.+.|+++|+++||+|+.|+++.+++.+..++..+..........+.....+++..+..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (574)
T PRK11160 180 LFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGLSQALMILANGLTV 259 (574)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555566666667777889999999999999999999999999999998888877776666555555555555444433
Q ss_pred HHHHHHHHHccCcccccccchhHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcCCCCCCCCCCCCCCCC
Q 000746 1157 WLIATFAVMQNGRAENQVAFASTMGLLLSYT-LNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPP 1235 (1303)
Q Consensus 1157 ~~~~~~~v~~~~~~~~~~~~~~~~gl~l~~~-~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~ 1235 (1303)
.++..++.... .+....|.+..++.|+ .....++..+...+..++....+.+|+.++++.++|.+.. + ..++
T Consensus 260 ~~i~~~g~~~~----~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~~-~-~~~~- 332 (574)
T PRK11160 260 VLMLWLAAGGV----GGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTFP-T-TSTA- 332 (574)
T ss_pred HHHHHHHHHHh----ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC-c-ccCC-
Confidence 32222222210 0112234444444443 3334566777777888899999999999999877653211 1 1111
Q ss_pred CCCCcceEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1236 AWPSSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1236 ~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
.+..|+|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|+
T Consensus 333 -~~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~ 398 (574)
T PRK11160 333 -AADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEIL 398 (574)
T ss_pred -CCCCCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence 134578999999999976545799999999999999999999999999999999999999999985
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-35 Score=373.83 Aligned_cols=367 Identities=18% Similarity=0.149 Sum_probs=275.6
Q ss_pred HHHHHHHHHHHHHhhhhHHHhhhcccccCCCC-Cc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 924 ILFACYLSTEVLRISSSTWLSFWTDQSTSKNY-NP-GFYIAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSI 1001 (1303)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~-~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l 1001 (1303)
..+++.++...+.+..|+.++...|....... .. ..+.+.++++.++..++.+++.+.....+.+...++|.++++|+
T Consensus 140 ~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 219 (686)
T TIGR03797 140 AILAMGLLGTLLGMLVPIATGILIGTAIPDADRSLLVQIALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVWDRL 219 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455566777778877777765432111 11 12233444455566777888888999999999999999999999
Q ss_pred HcCcccccccCCcchhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 1002 LRAPMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLILFYAAYLYYQST 1081 (1303)
Q Consensus 1002 l~~p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~~~~~~~~~~i~~~v~i~~~~~~~~~~~~pl~~~~~~i~~~~~~~ 1081 (1303)
+++|++||++.++|++++|++ |++.+++.+...+...+...+..++.+++++..+|.+.++++.++++++++..++.+.
T Consensus 220 l~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~ 298 (686)
T TIGR03797 220 LRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVLGLL 298 (686)
T ss_pred HcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999997 7899988887766666656655666666777777777666655555555555555555
Q ss_pred HHHHHHHhhhccchHHHHHHHHhcChhhHhhcCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Q 000746 1082 AREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGIMIW---L 1158 (1303)
Q Consensus 1082 ~r~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~---~ 1158 (1303)
.++..+...+..+...+++.|+++|+.+||+|+.|+++.+++.+..+...+..+.....+.|.......+..+... +
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~ 378 (686)
T TIGR03797 299 QVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFA 378 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555556667889999999999999999999999999998888887777776666666665554444333222 2
Q ss_pred HHHHHHHccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCC
Q 000746 1159 IATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWP 1238 (1303)
Q Consensus 1159 ~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp 1238 (1303)
++.+.+.. +....|.+..+..+...+..++..+...+.+++....+.+|+.++++.|+|.+. +... ..+
T Consensus 379 ~g~~lv~~------g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~---~~~~--~~~ 447 (686)
T TIGR03797 379 AAISLLGG------AGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDE---AKTD--PGK 447 (686)
T ss_pred HHHHHHHc------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc---CcCC--CCC
Confidence 22222221 123467777778888889999999999999999999999999999987765432 1111 123
Q ss_pred CcceEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1239 SSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1239 ~~G~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
..|+|+|+||+|+|+++.+++|+|+||+|+|||+|||||+||||||||+++|.|+|+|++|+|+
T Consensus 448 ~~~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~ 511 (686)
T TIGR03797 448 LSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVF 511 (686)
T ss_pred CCceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEE
Confidence 4689999999999976667899999999999999999999999999999999999999999985
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-35 Score=375.56 Aligned_cols=370 Identities=14% Similarity=0.153 Sum_probs=278.6
Q ss_pred HHHHHHHHHHHhhhhHHHhhhcccccCCCCCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000746 926 FACYLSTEVLRISSSTWLSFWTDQSTSKNYNP--GFYIAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILR 1003 (1303)
Q Consensus 926 ~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~ 1003 (1303)
+++.++..++.+..|+.++...|......... ..+.++++++.++..++.+++.++....+.+...+++.++|+|+++
T Consensus 160 ~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~ 239 (710)
T TIGR03796 160 LLAGLLLVLPGLVIPAFSQIFVDEILVQGRQDWLRPLLLGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILR 239 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33344455666777888877776532221111 1223344444556677788888999999999999999999999999
Q ss_pred CcccccccCCcchhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 1004 APMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLILFYAAYLYYQSTAR 1083 (1303)
Q Consensus 1004 ~p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~~~~~~~~~~i~~~v~i~~~~~~~~~~~~pl~~~~~~i~~~~~~~~r 1083 (1303)
+|++||++.++|++++|++.| +.+.+.+...+...+..++.+++.+++++..+|.+.++++.+++++.++..++.+..+
T Consensus 240 l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~ 318 (710)
T TIGR03796 240 LPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRV 318 (710)
T ss_pred CCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988 6788877777777777777777777778888887777666666666666666666666
Q ss_pred HHHHHhhhccchHHHHHHHHhcChhhHhhcCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Q 000746 1084 EVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGIMIW---LIA 1160 (1303)
Q Consensus 1084 ~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~---~~~ 1160 (1303)
+..+...+..+...+.+.|+++|+++||+++.|+.+.+++.+..++..+..........+.......+..+... +.+
T Consensus 319 ~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g 398 (710)
T TIGR03796 319 DANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVG 398 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666777889999999999999999999999999988877776666655555555555444443333222 222
Q ss_pred HHHHHccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcCCCCCCCCCCC--C-CCCCCC
Q 000746 1161 TFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAPGMVES--N-RPPPAW 1237 (1303)
Q Consensus 1161 ~~~v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~--~-~~~~~w 1237 (1303)
.+.+.. +....|.+..++.+...+..++..+...+.+++....+.+|+.++++.|+|.+..... . ...+.+
T Consensus 399 ~~~v~~------g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~ 472 (710)
T TIGR03796 399 GLRVME------GQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSP 472 (710)
T ss_pred HHHHHc------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccccccCC
Confidence 222221 1234677778888888999999999999999999999999999999887664321100 0 011113
Q ss_pred CCcceEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1238 PSSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1238 p~~G~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
+.+|.|+|+||+|+|+++.+++|+|+||+|+|||+|||||+||||||||+++|+|+|+|++|+|+
T Consensus 473 ~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~ 537 (710)
T TIGR03796 473 RLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEIL 537 (710)
T ss_pred CCCCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence 45689999999999987667899999999999999999999999999999999999999999985
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-35 Score=363.09 Aligned_cols=366 Identities=18% Similarity=0.170 Sum_probs=269.8
Q ss_pred HHHHHHHHHHHhhhhHHHhhhccccc-CCCC-C-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 926 FACYLSTEVLRISSSTWLSFWTDQST-SKNY-N-PGFYIAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSIL 1002 (1303)
Q Consensus 926 ~~~~~~~~~~~~~~~~~l~~w~~~~~-~~~~-~-~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll 1002 (1303)
+++.++...+.+..++.+++..|... .... . ...+.++++++.++..++.++..+...+.+.+...++|.++|++++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~ 88 (529)
T TIGR02857 9 GLLGALGALLIIAQAWLLARVIDGLISAGEPLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRERLLAAVA 88 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666667777777666442 1111 1 1223444555566677788888898999999999999999999999
Q ss_pred cCcccccccCCcchhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 1003 RAPMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLILFYAAYLYYQSTA 1082 (1303)
Q Consensus 1003 ~~p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~~~~~~~~~~i~~~v~i~~~~~~~~~~~~pl~~~~~~i~~~~~~~~ 1082 (1303)
+.|.+||++.++|++++|+++|++.+++.+...+..++..++..+..+++++..+|.++++++...++..++..++.+..
T Consensus 89 ~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~~~~~~~~ 168 (529)
T TIGR02857 89 ALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFMILIGWAA 168 (529)
T ss_pred hCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988877777777777777777777777777666555444444333334445555
Q ss_pred HHHHHHhhhccchHHHHHHHHhcChhhHhhcCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 000746 1083 REVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGIMIWLI--- 1159 (1303)
Q Consensus 1083 r~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~--- 1159 (1303)
++..+...+..+...+.+.|+++|+++||+|+.|+++.+++.+..++..+..........+......++..+..++.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (529)
T TIGR02857 169 QAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSVALVAVY 248 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555666788899999999999999999999999999888777766655554444455444444433322221
Q ss_pred HHHHHHccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCC
Q 000746 1160 ATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPS 1239 (1303)
Q Consensus 1160 ~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~ 1239 (1303)
+.+.+. .+ ....|.+..++.++..+..++..+...+..++....+.+|+.++++.+++... .. + ...+.
T Consensus 249 ~~~~~~-~g-----~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~---~~-~-~~~~~ 317 (529)
T TIGR02857 249 IGFRLL-AG-----DLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAG---KA-P-VTAAP 317 (529)
T ss_pred HHHHHH-cC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC---Cc-C-CCCCC
Confidence 111122 11 23456677778888889999999999999999999999999999985543221 11 1 11223
Q ss_pred cceEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1240 SGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1240 ~G~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
.|+|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|+
T Consensus 318 ~~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~ 380 (529)
T TIGR02857 318 APSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIA 380 (529)
T ss_pred CCeEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence 468999999999976545899999999999999999999999999999999999999999985
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-35 Score=365.94 Aligned_cols=369 Identities=21% Similarity=0.281 Sum_probs=273.6
Q ss_pred HHHHHHHHHHHHhhhhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 000746 925 LFACYLSTEVLRISSSTWLSFWTDQSTSKNYNPGFYIAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILRA 1004 (1303)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~ 1004 (1303)
.+++.++...+....++++....|...........+...++++.++..++.++..+...+.+.+...++|.+++++++++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~ 98 (567)
T COG1132 19 AILLLLLSALLSLLLPLLIGRIIDALLADLGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRL 98 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33344445566667777777666543311111222333444444555666777778888888999999999999999999
Q ss_pred cccccccCCcchhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 1005 PMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLILFYAAYLYYQSTARE 1084 (1303)
Q Consensus 1005 p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~~~~~~~~~~i~~~v~i~~~~~~~~~~~~pl~~~~~~i~~~~~~~~r~ 1084 (1303)
|++||+++++|++++|+++|++.++..+......+...++.+++.+++++..+|.+.++++...+++.+...++.++.++
T Consensus 99 ~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~ 178 (567)
T COG1132 99 PLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRK 178 (567)
T ss_pred CHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888775555556667777777888888877766666555555555666666688
Q ss_pred HHHHhhhccchHHHHHHHHhcChhhHhhcCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 1085 VKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGIMIWLIATFAV 1164 (1303)
Q Consensus 1085 l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v 1164 (1303)
..+...+..+.+++.+.|+++|+++||+|+.++...+++.+..+...+.................++..+....+..++.
T Consensus 179 ~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (567)
T COG1132 179 LSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLALGG 258 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888899999999999999999999999988777777666655554433333333333333333322222222221
Q ss_pred HccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEE
Q 000746 1165 MQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSGSIK 1244 (1303)
Q Consensus 1165 ~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~G~I~ 1244 (1303)
... .......|.+..++.+...+..++..+......++....+.||+.++++.+++..+.. .+ .++..|+|+
T Consensus 259 ~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~---~~--~~~~~~~I~ 330 (567)
T COG1132 259 FLV---LSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPP---DP--LKDTIGSIE 330 (567)
T ss_pred HHH---HcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCC---CC--CCCCCCeEE
Confidence 110 0111346788889999999999999999999999999999999999999865532211 11 345678999
Q ss_pred EEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1245 FEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1245 f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+||+|+|+++ +++|+|+||+|+|||++|||||||||||||+++|+|||||++|+|+
T Consensus 331 f~~vsf~y~~~-~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~ 387 (567)
T COG1132 331 FENVSFSYPGK-KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEIL 387 (567)
T ss_pred EEEEEEEcCCC-CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEE
Confidence 99999999753 5799999999999999999999999999999999999999999986
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=365.71 Aligned_cols=374 Identities=14% Similarity=0.131 Sum_probs=266.7
Q ss_pred HHHHHHHHHHHHHhhhhHHHhhhccccc--CCCCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 924 ILFACYLSTEVLRISSSTWLSFWTDQST--SKNYN-PGFYIAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNS 1000 (1303)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~l~~w~~~~~--~~~~~-~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ 1000 (1303)
+.+++.++...+.+..++.++...|... ..... ...+..+++++.++..++.+++.++....+.+...++|.++|+|
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ 105 (588)
T PRK11174 26 LSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVGFKAGQHIRQQIRQQVLDK 105 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555666677777776666421 11111 12233344445556667778888888999999999999999999
Q ss_pred HHcCcccccccCCcchhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 1001 ILRAPMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLILFYAAYLYYQS 1080 (1303)
Q Consensus 1001 ll~~p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~~~~~~~~~~i~~~v~i~~~~~~~~~~~~pl~~~~~~i~~~~~~ 1080 (1303)
++++|++||+++++|++++|+++|++.+++.+...+..++..++..++.+++++..+|.+.++++..+++..++..++.+
T Consensus 106 ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~ 185 (588)
T PRK11174 106 LQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLILLGTAPLIPLFMALVGM 185 (588)
T ss_pred HHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988877778777777777777777888887766555555555555556666
Q ss_pred HHHHHHHHhhhccchHHHHHHHHhcChhhHhhcCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 1081 TAREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGIMIWLIA 1160 (1303)
Q Consensus 1081 ~~r~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~ 1160 (1303)
..++..+...+..+.+.+.+.|.++|+++||+|++|+++.+++.+..++..+..........+......++..+.+++++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (588)
T PRK11174 186 GAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLSSAVLEFFASISIALVA 265 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666667778899999999999999999999999999998888777666554444333333333333322221111
Q ss_pred HH---HHHccCccccc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcCCCCCCCCCCCCCCCC
Q 000746 1161 TF---AVMQNGRAENQ--VAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPP 1235 (1303)
Q Consensus 1161 ~~---~v~~~~~~~~~--~~~~~~~gl~l~~~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~ 1235 (1303)
.+ ...+..+.+.. .........++.++..+..++..+...+..++.+..+.+|+.++++.|++.+. +...+.
T Consensus 266 ~~~~~~~~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~--~~~~~~- 342 (588)
T PRK11174 266 VYFGFSYLGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFLETPLAHPQ--QGEKEL- 342 (588)
T ss_pred HHHHHHHhcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccC--CCcccc-
Confidence 11 11111111110 00111222333556677889999999999999999999999999987654321 111111
Q ss_pred CCCCcceEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1236 AWPSSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1236 ~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
..+..++|+|+||+|.|.++ ++||+|+||+|+|||++||||+||||||||+++|+|+| |++|+|+
T Consensus 343 ~~~~~~~i~~~~vsf~~~~~-~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~ 407 (588)
T PRK11174 343 ASNDPVTIEAEDLEILSPDG-KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLK 407 (588)
T ss_pred CCCCCceEEEEeeEEeccCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEE
Confidence 11234689999999988654 57999999999999999999999999999999999999 9999985
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=371.22 Aligned_cols=366 Identities=19% Similarity=0.237 Sum_probs=273.7
Q ss_pred HHHHHHHHHHHhhhhHHHhhhcccccCCCC-Cch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000746 926 FACYLSTEVLRISSSTWLSFWTDQSTSKNY-NPG-FYIAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILR 1003 (1303)
Q Consensus 926 ~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~-~~~-~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~ 1003 (1303)
+++.++..++.+..|+.++...|....... ... .+..+++++.++..++.+++.++..+.+.++..++|.++|+|+++
T Consensus 153 ~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~ 232 (694)
T TIGR03375 153 LIASLLINLLALASPLFVMNVYDRVVPNQAFETLWVLAIGVALAIVFDFVLKTLRSYFLDVAGKKADLILSAKLFERVLG 232 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 334445556677778888777775432111 111 122233334445667788888999999999999999999999999
Q ss_pred CcccccccCCcchhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 1004 APMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLILFYAAYLYYQSTAR 1083 (1303)
Q Consensus 1004 ~p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~~~~~~~~~~i~~~v~i~~~~~~~~~~~~pl~~~~~~i~~~~~~~~r 1083 (1303)
+|++| ++.++|++++|+ +|++.+++.+...+...+..++.++..++++++.++.+.++.+..++++.++..++.+..+
T Consensus 233 l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~ 310 (694)
T TIGR03375 233 LRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWVPLVAIPLILLPGLLLQRPLS 310 (694)
T ss_pred CCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998 788999999999 7999999988776666666666666666677777777766655555555555556666666
Q ss_pred HHHHHhhhccchHHHHHHHHhcChhhHhhcCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Q 000746 1084 EVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGI---MIWLIA 1160 (1303)
Q Consensus 1084 ~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~---~~~~~~ 1160 (1303)
+..+...+..+...+.+.|+++|+++||+|+.|+.+.+++.+..++..+........+.+.....+++..+ ++++.+
T Consensus 311 ~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g 390 (694)
T TIGR03375 311 RLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVG 390 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666677778899999999999999999999999999998888777666665554444444443333222 222222
Q ss_pred HHHHHccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCc
Q 000746 1161 TFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSS 1240 (1303)
Q Consensus 1161 ~~~v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~ 1240 (1303)
.+.+.. +....|.+..++.+...+..++..+...+.+++....+.+|+.++++.++|.+.. . ......+..
T Consensus 391 ~~~v~~------g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~--~-~~~~~~~~~ 461 (694)
T TIGR03375 391 VYLISD------GELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEG--T-RFLHRPRLQ 461 (694)
T ss_pred HHHHHc------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC--C-CCCCCCCcc
Confidence 222222 1234677778888889999999999999999999999999999999987664321 1 111112346
Q ss_pred ceEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1241 GSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1241 G~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+|+|+||+|+|+++.+++|+|+||+|+|||+|||||+||||||||+++|+|+|+|++|+|+
T Consensus 462 ~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~ 523 (694)
T TIGR03375 462 GEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVL 523 (694)
T ss_pred ceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence 89999999999976556899999999999999999999999999999999999999999985
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-34 Score=359.06 Aligned_cols=367 Identities=19% Similarity=0.273 Sum_probs=264.4
Q ss_pred HHHHHHHHHHHHhhhhHHHhhhcccccCC-CCCchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 925 LFACYLSTEVLRISSSTWLSFWTDQSTSK-NYNPGF---YIAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNS 1000 (1303)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~l~~w~~~~~~~-~~~~~~---~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ 1000 (1303)
.+++.++...+.+..+++++...|..... ...... +.++++++.++..++.++..+.....+.+...++|.+++++
T Consensus 28 ~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ 107 (592)
T PRK10790 28 AVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDVMDA 107 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566677788888777753211 111111 12223344445566677788888899999999999999999
Q ss_pred HHcCcccccccCCcchhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 1001 ILRAPMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLILFYAAYLYYQS 1080 (1303)
Q Consensus 1001 ll~~p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~~~~~~~~~~i~~~v~i~~~~~~~~~~~~pl~~~~~~i~~~~~~ 1080 (1303)
++++|.+||++.++|++++|+++|++.+++.+...+..++..++.+++.++++.+.+|.+.++++..+++..++...+.+
T Consensus 108 l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~i~~~~~~~~~~ 187 (592)
T PRK10790 108 ALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMIFPAVLVVMVIYQR 187 (592)
T ss_pred HHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988888777777777777777777777776655444333333333334444
Q ss_pred HHHHHHHHhhhccchHHHHHHHHhcChhhHhhcCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 000746 1081 TAREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNRWL-TIRLETLGGIMIWLI 1159 (1303)
Q Consensus 1081 ~~r~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl-~~~l~~~~~~~~~~~ 1159 (1303)
..+...+......+..++++.|+++|+++||+|+.++++.+++.+..++..+........+.+. .....++..+....+
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (592)
T PRK10790 188 YSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSALILCGL 267 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555566788999999999999999999999999888887776655544433322221 222222222221111
Q ss_pred HHHHHHccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCC
Q 000746 1160 ATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPS 1239 (1303)
Q Consensus 1160 ~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~ 1239 (1303)
..+.... ..+....|.+..++.+...+..++..+...+.++++...+.+|+.++++.+++++. .. ..++.
T Consensus 268 ~~~~~~~----~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~---~~---~~~~~ 337 (592)
T PRK10790 268 LMLFGFS----ASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYG---ND---DRPLQ 337 (592)
T ss_pred HHHHHHH----HCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCC---CC---ccCCC
Confidence 1111110 11223467778888889999999999999999999999999999999987644321 11 11234
Q ss_pred cceEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1240 SGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1240 ~G~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
.|+|+|+||+|+|+++ +++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|+
T Consensus 338 ~~~i~~~~v~f~y~~~-~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~ 399 (592)
T PRK10790 338 SGRIDIDNVSFAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIR 399 (592)
T ss_pred CCeEEEEEEEEEeCCC-CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEE
Confidence 5789999999999754 5799999999999999999999999999999999999999999985
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=365.21 Aligned_cols=364 Identities=16% Similarity=0.227 Sum_probs=272.1
Q ss_pred HHHHHHHHHhhhhHHHhhhcccccCCC-CCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Q 000746 928 CYLSTEVLRISSSTWLSFWTDQSTSKN-YNP-GFYIAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILRAP 1005 (1303)
Q Consensus 928 ~~~~~~~~~~~~~~~l~~w~~~~~~~~-~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p 1005 (1303)
+.++...+.+..|+.++...|...... ... ..+.++++++.++..++.+++.+.....+.+...++|.++|+|++++|
T Consensus 147 ~s~~~~ll~l~~p~~~~~iid~v~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~~l~ 226 (694)
T TIGR01846 147 ISLALQLFALVTPLLFQVVIDKVLVHRGLSTLSVLALAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLP 226 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 334445566677777777777543211 111 222334445555667778888999999999999999999999999999
Q ss_pred ccccccCCcchhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 1006 MLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLILFYAAYLYYQSTAREV 1085 (1303)
Q Consensus 1006 ~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~~~~~~~~~~i~~~v~i~~~~~~~~~~~~pl~~~~~~i~~~~~~~~r~l 1085 (1303)
++||++.++|++++|+ +|++.+++.+...+...+..++.++..++++++.+|.+.++++..++++.++..+..+..++.
T Consensus 227 ~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~ 305 (694)
T TIGR01846 227 LGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGSLVCYALLSVFVGPILRKR 305 (694)
T ss_pred HHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 699999988876666655555555555667777788776665555555555544555554555
Q ss_pred HHHhhhccchHHHHHHHHhcChhhHhhcCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Q 000746 1086 KRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGIMIW---LIATF 1162 (1303)
Q Consensus 1086 ~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~---~~~~~ 1162 (1303)
.+...+..+...+++.|+++|+++||+|+.|+++.+++.+..++..+........+.+.....+++..+... +.+.+
T Consensus 306 ~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~ 385 (694)
T TIGR01846 306 VEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAH 385 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 555555667888999999999999999999999999999888877777666655555555555444333222 22222
Q ss_pred HHHccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcce
Q 000746 1163 AVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSGS 1242 (1303)
Q Consensus 1163 ~v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~G~ 1242 (1303)
.+.. +....|.+..+..+...+..++..+...+.+++....+.+|+.++++.|+|.+.. ... ......|.
T Consensus 386 lv~~------g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~--~~~--~~~~~~~~ 455 (694)
T TIGR01846 386 LVIG------GALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA--GLA--ALPELRGA 455 (694)
T ss_pred HHHc------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC--CCC--CCCCCCCe
Confidence 2221 1234677777888888999999999999999999999999999999887664321 111 11123588
Q ss_pred EEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1243 I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|+
T Consensus 456 i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~ 515 (694)
T TIGR01846 456 ITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVL 515 (694)
T ss_pred EEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence 999999999986666799999999999999999999999999999999999999999985
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-34 Score=358.78 Aligned_cols=367 Identities=15% Similarity=0.201 Sum_probs=276.4
Q ss_pred HHHHHHHHHhhhhHHHhhhcccccCCCCC-chHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Q 000746 928 CYLSTEVLRISSSTWLSFWTDQSTSKNYN-PGFY-IAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILRAP 1005 (1303)
Q Consensus 928 ~~~~~~~~~~~~~~~l~~w~~~~~~~~~~-~~~~-~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p 1005 (1303)
+.++........+++++...|........ ...+ ...++++.++..++.++..++..+.+.+...++|.++++++++.|
T Consensus 33 ~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~ 112 (582)
T PRK11176 33 ALILNAASDTFMLSLLKPLLDDGFGKADRSVLKWMPLVVIGLMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGMP 112 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33344444455666666666543221111 1112 222333455566677777788888999999999999999999999
Q ss_pred ccccccCCcchhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 1006 MLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLILFYAAYLYYQSTAREV 1085 (1303)
Q Consensus 1006 ~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~~~~~~~~~~i~~~v~i~~~~~~~~~~~~pl~~~~~~i~~~~~~~~r~l 1085 (1303)
.++|++.+.|++++|+++|++.+++.+...+..++..++.+++.++++++.+|.+.++++..+++..++..+..+..++.
T Consensus 113 ~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~ 192 (582)
T PRK11176 113 VSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNI 192 (582)
T ss_pred HHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988888788888888888888888888888776666555555555555666666666
Q ss_pred HHHhhhccchHHHHHHHHhcChhhHhhcCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 1086 KRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGIMIWLIATFAVM 1165 (1303)
Q Consensus 1086 ~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~ 1165 (1303)
.+......+...+++.|.++|+++||+|+.++++.+++.+..+...+..........+.....+++..+....+..++.+
T Consensus 193 ~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~ 272 (582)
T PRK11176 193 SKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAASF 272 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666677888999999999999999999999999999988888877776666555665555555443333222222211
Q ss_pred ccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEE
Q 000746 1166 QNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSGSIKF 1245 (1303)
Q Consensus 1166 ~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~G~I~f 1245 (1303)
.. ..+....|.+.+++.+...+..++..+...+..++....+.+|+.++++.++|.+. +.. ...|..++|+|
T Consensus 273 ~~---~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~--~~~---~~~~~~~~i~~ 344 (582)
T PRK11176 273 PS---VMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDE--GKR---VIERAKGDIEF 344 (582)
T ss_pred HH---HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCC--CCc---CCCCCCCeEEE
Confidence 10 01123467777788888889999999999999999999999999999987655321 111 11234578999
Q ss_pred EEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1246 EDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1246 ~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|+
T Consensus 345 ~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~ 401 (582)
T PRK11176 345 RNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEIL 401 (582)
T ss_pred EEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEE
Confidence 999999976556899999999999999999999999999999999999999999985
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-37 Score=351.96 Aligned_cols=240 Identities=20% Similarity=0.266 Sum_probs=189.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcEEEEeeEEEeCC-CC
Q 000746 576 GDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILMPNPPLEPELPAVSIKNGNFSWDS-KS 654 (1303)
Q Consensus 576 ~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~f~~~~-~~ 654 (1303)
+.+++..+|+.+++++.+..++..++..... ..|+.+|+..++......+..++..+.|+++|++++|++ ..
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nls~~y~~~~~ 95 (329)
T PRK14257 23 NELDAKAIYDEFQKLNKYQRAFAWLKLPKQK-------KAELKQFLNKKKTQVDLLKEDFNHANVFEIRNFNFWYMNRTK 95 (329)
T ss_pred chhHHHHHHHHhhccccccchhhHHhccccc-------chhhhhcccccccccccccCCCCcCceEEEEeeEEEecCCCc
Confidence 5678899999999999888887766654322 568888876544211111122344568999999999964 34
Q ss_pred CccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCC-----CCCCceE--------------EEcCeEEEEccCcccc
Q 000746 655 PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELP-----PLKDASV--------------VIRGTVAYVPQISWIF 715 (1303)
Q Consensus 655 ~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~-----~~~g~~~--------------~~~~~iayv~Q~p~l~ 715 (1303)
++|+|+||+|++||+++|+|+||||||||+++|+|+++ |.+|.+. .+++.++||||+||+|
T Consensus 96 ~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~ 175 (329)
T PRK14257 96 HVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPF 175 (329)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccC
Confidence 79999999999999999999999999999999999996 3566422 1356799999999999
Q ss_pred cccHHHHHccCCC---CChh-----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHH-------
Q 000746 716 NATLRKNILFGSE---FDPA-----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF------- 780 (1303)
Q Consensus 716 ~~TireNI~~g~~---~~~~-----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~------- 780 (1303)
++|++|||.|+.. ++++ .+.++++.|++.++ .++.++++|.+||||||||++||||++
T Consensus 176 ~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-------l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlL 248 (329)
T PRK14257 176 EMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDE-------VKDDLDKAGNALSGGQQQRLCIARAIALEPEVLL 248 (329)
T ss_pred CCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcch-------hhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEE
Confidence 9999999998643 2222 24556666665443 357789999999999999999999954
Q ss_pred ----------------HHHHhHhcCCCEEEEEecCCCcccc-cCEEEEEeCCEEEEecCHHHHHhc
Q 000746 781 ----------------NSCIKEELRGKTRILVTNQLHFLPH-VDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 781 ----------------~~~i~~~~~~~TvilvtH~~~~l~~-aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
.+++.+..+++|+|+|||+++++.. ||+|++|++|+|++.|+++++...
T Consensus 249 LDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~~ 314 (329)
T PRK14257 249 MDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIH 314 (329)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 3456666678999999999999876 999999999999999999998754
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=350.42 Aligned_cols=369 Identities=13% Similarity=0.040 Sum_probs=255.0
Q ss_pred HHHHHHHHHHHHHhhhhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000746 924 ILFACYLSTEVLRISSSTWLSFWTDQSTSKNYNPGFYIAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILR 1003 (1303)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~ 1003 (1303)
+.+++.++.....+..++.++.+.+....... ..+..++++.++..++.++..++....+.+...++|.++|+|+++
T Consensus 22 l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~ 98 (555)
T TIGR01194 22 FSIALGLAGGLAIIALLASINNAIHEENFLGQ---GSLFSFGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILG 98 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33334444555666677777777654211111 112223344455566778888888999999999999999999999
Q ss_pred CcccccccCCcchhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 1004 APMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLILFYAAYLYYQSTAR 1083 (1303)
Q Consensus 1004 ~p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~~~~~~~~~~i~~~v~i~~~~~~~~~~~~pl~~~~~~i~~~~~~~~r 1083 (1303)
+|++||+++++|++++|+++|++.+++.+.. +..++..++.+++.++++++.+|.+.++++.++++..++..+..++.+
T Consensus 99 ~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~L~li~l~~~~~~~~~~~~~~~~~~ 177 (555)
T TIGR01194 99 APIEEIDRRGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSVPMFAITISAIIIGTAAQLLAFMGGF 177 (555)
T ss_pred CCHHHHHhcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988754 556666666667777777788887776655555544444444444445
Q ss_pred HHHHHhhhccchHHHHHHHHhcChhhHhhcCcHH--HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 1084 EVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYD--RMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGIMIWLIAT 1161 (1303)
Q Consensus 1084 ~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~--~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~ 1161 (1303)
+..+..++..+.+++.+.|.+.|+++||+|+.++ ...+++.+..++..+................+++..+...+...
T Consensus 178 ~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (555)
T TIGR01194 178 KFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFIAAENFGQLLFFLLIGCALF 257 (555)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555667889999999999999999999843 44555666555555444332222222212222222111111111
Q ss_pred HHHHccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcCCCCCCCC---CCCCCC--CCC
Q 000746 1162 FAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAPGM---VESNRP--PPA 1236 (1303)
Q Consensus 1162 ~~v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~---~~~~~~--~~~ 1236 (1303)
++... .....|.+..++.++..+..++..+...+.+++.+..+.+|+.++++.+++++.. .+.... .+.
T Consensus 258 ~~~~~------~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~ 331 (555)
T TIGR01194 258 AAAMF------ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAH 331 (555)
T ss_pred HHHHh------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccccc
Confidence 11111 1234577778888888999999999999999999999999999998643221111 000000 011
Q ss_pred CCCcceEEEEEEEEEeCCC---CCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1237 WPSSGSIKFEDVVLRYRPE---LPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1237 wp~~G~I~f~nVsf~Y~~~---~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
....++|+|+||+|+|++. .+++|+|+||+|++||++||||+||||||||+++|.|+|+|++|+|+
T Consensus 332 ~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~ 400 (555)
T TIGR01194 332 DKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEIL 400 (555)
T ss_pred CCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 1234789999999999643 23699999999999999999999999999999999999999999985
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=354.36 Aligned_cols=370 Identities=17% Similarity=0.246 Sum_probs=287.2
Q ss_pred HHHHHHHHHHHHhhhhHHHhhhcccccCCCCCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 925 LFACYLSTEVLRISSSTWLSFWTDQSTSKNYNP--GFYIAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSIL 1002 (1303)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll 1002 (1303)
.+++.++..++....+++++...+......... ..+.++++++.++..++.+++.+...+.+.+....+|+.++++++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~~~ 98 (571)
T TIGR02203 19 AGVAMILVAATESTLAALLKPLLDDGFGGRDRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLL 98 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455566666677766555332211111 222334555666667777888888999999999999999999999
Q ss_pred cCcccccccCCcchhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 1003 RAPMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLILFYAAYLYYQSTA 1082 (1303)
Q Consensus 1003 ~~p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~~~~~~~~~~i~~~v~i~~~~~~~~~~~~pl~~~~~~i~~~~~~~~ 1082 (1303)
+.|.++|++.+.|++++|+++|++.+++.+...+..++..++.++..++++++.+|.+.++++++.++..++..++.+..
T Consensus 99 ~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~~l~~~~~~~~~~~~ 178 (571)
T TIGR02203 99 GLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRL 178 (571)
T ss_pred cCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988888888888888888888888888887777766666666667777777
Q ss_pred HHHHHHhhhccchHHHHHHHHhcChhhHhhcCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 1083 REVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGIMIWLIATF 1162 (1303)
Q Consensus 1083 r~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~ 1162 (1303)
++..+...+..++..+.+.|+++|+++||+++.++++.+++.+..+...+..........+.....+++..+...++..+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (571)
T TIGR02203 179 RRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFI 258 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777788899999999999999999999999999999998888877777666666666555554443222222222
Q ss_pred HHHccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcce
Q 000746 1163 AVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSGS 1242 (1303)
Q Consensus 1163 ~v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~G~ 1242 (1303)
+.+.. ..+....|.+..++.++..+..++..+...+..++....+.+|+.++++.++|.+.. ..+. .+..++
T Consensus 259 g~~~~---~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~---~~~~--~~~~~~ 330 (571)
T TIGR02203 259 ALFQA---QAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTG---TRAI--ERARGD 330 (571)
T ss_pred HHHHH---HcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC---CCCC--CCCCCe
Confidence 21110 011234677888888899999999999999999999999999999999876554321 1111 134578
Q ss_pred EEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1243 I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+|+||+|+|+++.+++|+|+||+|+|||+|||||+||||||||+++|.|+|+|++|+|+
T Consensus 331 i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~ 390 (571)
T TIGR02203 331 VEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQIL 390 (571)
T ss_pred EEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEE
Confidence 999999999976556899999999999999999999999999999999999999999986
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=350.43 Aligned_cols=368 Identities=12% Similarity=0.119 Sum_probs=262.7
Q ss_pred HHHHHHHHHHHHHhhhhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000746 924 ILFACYLSTEVLRISSSTWLSFWTDQSTSKNYNPGFYIAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILR 1003 (1303)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~ 1003 (1303)
..+++.++..++.+..++.++..+|...... ....+++++++..+...+..++..+.......+...++|+++|+|+++
T Consensus 23 ~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~ 101 (585)
T TIGR01192 23 LIVIANITLAAITIAEPILFGRIIDAISSKS-DVLPTLALWAGFGVFNTIAYVLVAREADRLAHGRRATLLTEAFGRIIS 101 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444445556677777887777776532211 111222222223333333444444445556666666777899999999
Q ss_pred CcccccccCCcchhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 1004 APMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLILFYAAYLYYQSTAR 1083 (1303)
Q Consensus 1004 ~p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~~~~~~~~~~i~~~v~i~~~~~~~~~~~~pl~~~~~~i~~~~~~~~r 1083 (1303)
+|++||+++++|++++|+++|++.++......+...+..++.+++.+++++..+|.+.++++.+.+++.++..++.+..+
T Consensus 102 l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~ 181 (585)
T TIGR01192 102 MPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVLGILYILIAKLVMQRTK 181 (585)
T ss_pred CCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999887777777777666666666777778887777666666666666667777777
Q ss_pred HHHHHhhhccchHHHHHHHHhcChhhHhhcCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Q 000746 1084 EVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGI---MIWLIA 1160 (1303)
Q Consensus 1084 ~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~---~~~~~~ 1160 (1303)
+..+...+..+...+++.|+++|+++||+|+.++++.+++.+..++..+..+.......+......++..+ ++++.+
T Consensus 182 ~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g 261 (585)
T TIGR01192 182 NGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNRMASTISMMCILVIG 261 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777778899999999999999999999999988888877766555444333333332222222222 222222
Q ss_pred HHHHHccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCc
Q 000746 1161 TFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSS 1240 (1303)
Q Consensus 1161 ~~~v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~ 1240 (1303)
.+.+. . +....|.+..++.++..+..++..+...+.++..+..+.+|+.++++.+++.++. ..++...+..
T Consensus 262 ~~~v~-~-----g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~---~~~~~~~~~~ 332 (585)
T TIGR01192 262 TVLVI-K-----GELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEP---ADAPELPNVK 332 (585)
T ss_pred HHHHH-c-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCC---ccCCCCCCCC
Confidence 22222 1 1234677777888888899999999999999999999999999998865443211 1111111235
Q ss_pred ceEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1241 GSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1241 G~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
+.|+|+||+|+|+++ .++|+|+||+|++||++||||+||||||||+++|.|+|+|++|+|+
T Consensus 333 ~~i~~~~v~~~y~~~-~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~ 393 (585)
T TIGR01192 333 GAVEFRHITFEFANS-SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQIL 393 (585)
T ss_pred CeEEEEEEEEECCCC-CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEE
Confidence 789999999999754 4699999999999999999999999999999999999999999985
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=307.11 Aligned_cols=481 Identities=19% Similarity=0.216 Sum_probs=306.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 318 LRALNNSFGGRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPAWIGYI-YA-FLIFVGVSFGVLTEAQYFQNVWRVG 395 (1303)
Q Consensus 318 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (1303)
.-.++|.+++.++..+.+.++.++.. ..++..+-+++.+.+.....++ +. .++.+..+.+.++.. .....+
T Consensus 4 ll~llr~nr~~~i~~~a~s~a~g~~g---~~lLa~in~al~e~~~~~~~~l~~f~~llllf~~ss~is~l----g~t~~g 76 (546)
T COG4615 4 LLLLLRQNRWPFISVMALSLASGALG---IGLLAFINQALIETADTSLLVLPEFLGLLLLFMVSSLISQL----GLTTLG 76 (546)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhcccceeeHHHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 34577888888887776666555443 3333334444432221111111 11 111111111111111 112234
Q ss_pred HHHHHHHHHHHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 396 FRLRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQLHGLWSAPFRITLSMVLLYQQLGVASLLGSLM 475 (1303)
Q Consensus 396 ~~lr~~L~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~~~~~~~~~~i~~~~~~l~~~lg~~~l~~~~~ 475 (1303)
.+.-..++..+.+|.+.-+.....+.++++++..++.|+..|.-.+..++.+..+.+-++.+..++++..+.+..+.++.
T Consensus 77 q~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~ISf~~s~lp~~~qa~il~l~s~aYLayLSp~mf~l~vV~ 156 (546)
T COG4615 77 QHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFAFSRLPELVQAIILTLGSAAYLAYLSPKMFLLTVVW 156 (546)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhcccccceeehHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 44444555567777777777777788899999999999999986667777777666666667777777777766666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 476 LVLMVPLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKS--FQSRVQSIRDDELSWFRKAQFLSAFNS 553 (1303)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~--~~~~i~~~r~~e~~~~~~~~~~~~~~~ 553 (1303)
+++.+..+.+..++.-+...+..+..|+..+..+.+++|-|.++...-... +.+.+... .++.+. .......+..
T Consensus 157 ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~-a~~~r~--~~~~~n~f~~ 233 (546)
T COG4615 157 IVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPD-AQEYRH--HIIRANTFHL 233 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcc-hHHHHh--hhhhhhHHHH
Confidence 666666666666676677777778889999999999999999998753221 22222111 011111 1111111110
Q ss_pred HHHHHHh-HHhHHhhhhhhhhhC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 000746 554 FILNSIP-VVVTVVSFGTFTLLG-GDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILMPN 631 (1303)
Q Consensus 554 ~~~~~~~-~~~~~~~f~~~~~~~-~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~ 631 (1303)
...+... ++..+++...|+... +--+...+.+....+..+..|+.++...++.+..|.++++||.++-..|+....+.
T Consensus 234 la~~~~ni~l~~lIGlvf~lal~~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a~~~~ 313 (546)
T COG4615 234 LAVNWSNIMLLGLIGLVFWLALSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKADFPR 313 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCccccCCC
Confidence 1111111 112222222233221 11122234444444556789999999999999999999999998866544333333
Q ss_pred CCCCCCCCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcC--------
Q 000746 632 PPLEPELPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRG-------- 703 (1303)
Q Consensus 632 ~~~~~~~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~-------- 703 (1303)
+...|+...++++|+.|.|++...-+..||++|++||++-|+|.|||||||++++|.|++.|++|++. +++
T Consensus 314 ~q~~p~~~~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~-ldg~pV~~e~l 392 (546)
T COG4615 314 PQAFPDWKTLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEIL-LDGKPVSAEQL 392 (546)
T ss_pred CCcCCcccceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCcee-ECCccCCCCCH
Confidence 34445567899999999998777789999999999999999999999999999999999999998643 333
Q ss_pred -----eEEEEccCcccccccHHHHHccCCC-CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHH
Q 000746 704 -----TVAYVPQISWIFNATLRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMAR 777 (1303)
Q Consensus 704 -----~iayv~Q~p~l~~~TireNI~~g~~-~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLAR 777 (1303)
-++-|.-|-|+|+.++ -+.. .+++.+.+-++.-.+.+..+ +.+|--+ ...||-|||.|+|+--
T Consensus 393 edYR~LfSavFsDyhLF~~ll-----~~e~~as~q~i~~~LqrLel~~kts-l~d~~fs-----~~kLStGQkKRlAll~ 461 (546)
T COG4615 393 EDYRKLFSAVFSDYHLFDQLL-----GPEGKASPQLIEKWLQRLELAHKTS-LNDGRFS-----NLKLSTGQKKRLALLL 461 (546)
T ss_pred HHHHHHHHHHhhhHhhhHhhh-----CCccCCChHHHHHHHHHHHHhhhhc-ccCCccc-----ccccccchHHHHHHHH
Confidence 3555566667766543 2222 45666666565555554432 2222222 2469999999999999
Q ss_pred HHHHH---------------HHhH--------hc--CCCEEEEEecCCCcccccCEEEEEeCCEEEEe
Q 000746 778 AVFNS---------------CIKE--------EL--RGKTRILVTNQLHFLPHVDRIILVSEGMIKEE 820 (1303)
Q Consensus 778 Al~~~---------------~i~~--------~~--~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~ 820 (1303)
|++++ ++++ .+ .|||++.|||+-++...|||++.|++|+++|.
T Consensus 462 AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 462 ALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 529 (546)
T ss_pred HHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceeec
Confidence 96542 1221 11 59999999999999999999999999999874
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=351.39 Aligned_cols=332 Identities=16% Similarity=0.185 Sum_probs=245.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCcchhHHHhhccHHHHHHHHHHHHHHH
Q 000746 960 YIAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILRAPMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMF 1039 (1303)
Q Consensus 960 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~~~ 1039 (1303)
++++++++.++..++.++..++....+.+...++|.++|++++++|++||+++++|++++|+++|++.++......+..+
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~ 117 (569)
T PRK10789 38 WIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTL 117 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34444444455566677777888889999999999999999999999999999999999999999999987666666666
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHhcChhhHhhcCcHHH
Q 000746 1040 MNQLWQLLSTFVLI-GIVSTISLWAIMPLLILFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDR 1118 (1303)
Q Consensus 1040 ~~~~~~~i~~~v~i-~~~~~~~~~~~~pl~~~~~~i~~~~~~~~r~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~ 1118 (1303)
+..++..++.++++ ...+|.+.++++..+++..++...+.+..++..+..++..+.+.+.+.|+++|+++||+|+.+++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~ 197 (569)
T PRK10789 118 VDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDR 197 (569)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHH
Confidence 66554444444444 35666655555444444444555555555555555666678899999999999999999999999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHccCcccccccchhHHHHHHHHHHHHHHHHH
Q 000746 1119 MAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGI---MIWLIATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLS 1195 (1303)
Q Consensus 1119 ~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~ 1195 (1303)
+.+++.+..++..+..........+.......+..+ +++.++.+.+. . +....|.+..++.+...+..++.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~-~-----g~lt~g~l~a~~~~~~~~~~pl~ 271 (569)
T PRK10789 198 QSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVV-N-----GSLTLGQLTSFVMYLGLMIWPML 271 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-c-----CCcCHHHHHHHHHHHHHHHHHHH
Confidence 999998887766665555443333333333222222 11222222222 1 12346777778888888999999
Q ss_pred HHHHHHHHHhhhhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceeeecCCCEEEE
Q 000746 1196 GVLRQASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGI 1275 (1303)
Q Consensus 1196 ~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaI 1275 (1303)
.+...+..++....+.+|+.++++.++|.+.. . .+. .+.+|+|+|+||+|+|+++.+++|+|+||+|+|||++||
T Consensus 272 ~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~--~-~~~--~~~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~i 346 (569)
T PRK10789 272 ALAWMFNIVERGSAAYSRIRAMLAEAPVVKDG--S-EPV--PEGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGI 346 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC--C-CCC--CCCCCcEEEEEEEEECCCCCCccccCeeEEECCCCEEEE
Confidence 99999999999999999999999876543211 1 111 123578999999999976556799999999999999999
Q ss_pred ECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1276 VGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1276 VGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
||+||||||||+++|.|+|+|++|+|+
T Consensus 347 vG~sGsGKSTLl~ll~g~~~p~~G~i~ 373 (569)
T PRK10789 347 CGPTGSGKSTLLSLIQRHFDVSEGDIR 373 (569)
T ss_pred ECCCCCCHHHHHHHHhcccCCCCCEEE
Confidence 999999999999999999999999985
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-33 Score=348.37 Aligned_cols=370 Identities=19% Similarity=0.257 Sum_probs=271.1
Q ss_pred HHHHHHHHHHHHhhhhHHHhhhccccc-CCCCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 925 LFACYLSTEVLRISSSTWLSFWTDQST-SKNYN-PGFYIAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSIL 1002 (1303)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~l~~w~~~~~-~~~~~-~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll 1002 (1303)
.+++.++...+.+..++.++...|... ..... ...+..+++++.++..+..+++.+.....+.+...++|.+++++++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~ 102 (576)
T TIGR02204 23 ALVALLITAAATLSLPYAVRLMIDHGFSKDSSGLLNRYFAFLLVVALVLALGTAARFYLVTWLGERVVADIRRAVFAHLI 102 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555666666776666665422 11111 1122333344444455566777788889999999999999999999
Q ss_pred cCcccccccCCcchhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 1003 RAPMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLILFYAAYLYYQSTA 1082 (1303)
Q Consensus 1003 ~~p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~~~~~~~~~~i~~~v~i~~~~~~~~~~~~pl~~~~~~i~~~~~~~~ 1082 (1303)
+.|.++|++.+.|++++|+++|++.+++.....+..++..++.+++.+++++..+|.+.++++...++.+++..++.+..
T Consensus 103 ~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~~~~~~~~~~ 182 (576)
T TIGR02204 103 SLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLFGRRV 182 (576)
T ss_pred cCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988877777777777777777777777777766655544444444555566666
Q ss_pred HHHHHHhhhccchHHHHHHHHhcChhhHhhcCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Q 000746 1083 REVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGIMIW---LI 1159 (1303)
Q Consensus 1083 r~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~---~~ 1159 (1303)
+...+...+......+++.|.++|+++||+|+.++++.+++.+..+...+..........+.......+..+... +.
T Consensus 183 ~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (576)
T TIGR02204 183 RKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWV 262 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666677777778889999999999999999999999998888888776665555444444544443333222211 11
Q ss_pred HHHHHHccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCC
Q 000746 1160 ATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPS 1239 (1303)
Q Consensus 1160 ~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~ 1239 (1303)
+...+.. +....|.+..+..+...+..++..+...+.+++....+.+|+.++++.++|.+...+ .....+|.
T Consensus 263 g~~~v~~------g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~--~~~~~~~~ 334 (576)
T TIGR02204 263 GAHDVIA------GKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAH--PKTLPVPL 334 (576)
T ss_pred HHHHHHc------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCC--CccCCcCC
Confidence 2222221 123467777788888899999999999999999999999999999987655322111 11122344
Q ss_pred cceEEEEEEEEEeCCCC-CCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1240 SGSIKFEDVVLRYRPEL-PPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1240 ~G~I~f~nVsf~Y~~~~-~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
.+.|+|+||+|+|+++. +++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|+
T Consensus 335 ~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~ 398 (576)
T TIGR02204 335 RGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRIL 398 (576)
T ss_pred CceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEE
Confidence 57899999999997532 5799999999999999999999999999999999999999999985
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=331.17 Aligned_cols=200 Identities=24% Similarity=0.421 Sum_probs=177.8
Q ss_pred cEEEEeeEEEeCC-CCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE-------------cCeE
Q 000746 640 AVSIKNGNFSWDS-KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI-------------RGTV 705 (1303)
Q Consensus 640 ~i~~~~~~f~~~~-~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~-------------~~~i 705 (1303)
.|+++|++++|++ ..++|+|+||+|++||+++|+|+||||||||+++|.|+++ .+|. +.+ ++.|
T Consensus 2 ~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~-I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 2 QMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGD-IQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred eEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcE-EEECCEEhhhCCHHHHhhhE
Confidence 5899999999964 3479999999999999999999999999999999999997 5663 433 3469
Q ss_pred EEEccCcccccccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHH-----
Q 000746 706 AYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF----- 780 (1303)
Q Consensus 706 ayv~Q~p~l~~~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~----- 780 (1303)
+||||+|++|++|++||+.+..++++++++++++.+++.+.+..+|++++|.++|+|.+||||||||++||||++
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i 159 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 159 (275)
T ss_pred EEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999755557788999999999999999999999999999999999999999999999954
Q ss_pred ------------------HHHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhcchHHHHHHHHhc
Q 000746 781 ------------------NSCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLMENAG 841 (1303)
Q Consensus 781 ------------------~~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~~ 841 (1303)
.+.+....+++|+|+|||+++.+..||+|++|++|++++.|+++++.++++.|++++.+.+
T Consensus 160 lllDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 238 (275)
T cd03289 160 LLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAISPSD 238 (275)
T ss_pred EEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHHHHHHhhcc
Confidence 2345555568999999999999989999999999999999999999998888888887654
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-32 Score=342.98 Aligned_cols=367 Identities=14% Similarity=0.152 Sum_probs=260.0
Q ss_pred HHHHHHHHHHHHhhhhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 000746 925 LFACYLSTEVLRISSSTWLSFWTDQSTSKNYNPGFYIAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILRA 1004 (1303)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~ 1004 (1303)
.+++.++..++.+..+++++...|..... .....++++++++.++..+..++......+...+...+++.++++|++++
T Consensus 24 ~~~~~i~~~~~~~~~~~~~~~iid~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~ 102 (588)
T PRK13657 24 LAVANVLLAAATFAEPILFGRIIDAISGK-GDIFPLLAAWAGFGLFNIIAGVLVARHADRLAHRRRLAVLTEYFERIIQL 102 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33344555566777788887777654322 11122223333333333333333334444455555566677999999999
Q ss_pred cccccccCCcchhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 1005 PMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLILFYAAYLYYQSTARE 1084 (1303)
Q Consensus 1005 p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~~~~~~~~~~i~~~v~i~~~~~~~~~~~~pl~~~~~~i~~~~~~~~r~ 1084 (1303)
|.++|++.+.|++++|+++|++.+.+.....+..++..++..++.+++++..+|.+.++++.+++++..+..++.+..++
T Consensus 103 ~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~ 182 (588)
T PRK13657 103 PLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVLGIVYTLITTLVMRKTKD 182 (588)
T ss_pred CHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999987766666666666665666666667777776666665555556666677777777
Q ss_pred HHHHhhhccchHHHHHHHHhcChhhHhhcCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Q 000746 1085 VKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGIMI---WLIAT 1161 (1303)
Q Consensus 1085 l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~---~~~~~ 1161 (1303)
..+...+..+...+++.|+++|+++||+|+.++++.+++.+..+...+..........+.....+++..+.. ++.+.
T Consensus 183 ~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 262 (588)
T PRK13657 183 GQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAASTITMLAILVLGA 262 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777889999999999999999999999999888888877766655544444444433333322222 22222
Q ss_pred HHHHccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcc
Q 000746 1162 FAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSG 1241 (1303)
Q Consensus 1162 ~~v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~G 1241 (1303)
+.+.. +....|.+..++.++..+..++..+...+..+..+..+.+|+.++++.+++.+.. + ...+. .+.++
T Consensus 263 ~~v~~------g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~-~-~~~~~-~~~~~ 333 (588)
T PRK13657 263 ALVQK------GQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDP-P-GAIDL-GRVKG 333 (588)
T ss_pred HHHHc------CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC-C-CCCCc-CCCCC
Confidence 22221 1234677777788888899999999998999999999999999998765443211 1 11111 12357
Q ss_pred eEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1242 SIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1242 ~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
.|+|+||+|+|+++ +++|+|+||+++|||++||||+||||||||+++|+|+|+|++|+|.
T Consensus 334 ~I~~~~vsf~y~~~-~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~ 393 (588)
T PRK13657 334 AVEFDDVSFSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRIL 393 (588)
T ss_pred eEEEEEEEEEeCCC-CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEE
Confidence 89999999999743 5799999999999999999999999999999999999999999985
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=313.87 Aligned_cols=361 Identities=17% Similarity=0.237 Sum_probs=257.8
Q ss_pred HHHHHHHhhhhHHHhhhcccccCCCCCchHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000746 930 LSTEVLRISSSTWLSFWTDQSTSKNYNPGFYIAIYTILAFG------QVTVTLLNSYWLIISSLRAAKRLHDSMLNSILR 1003 (1303)
Q Consensus 930 ~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~i~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~ 1003 (1303)
++...+....|...++..|...............|+++-++ +.++.-+++++.....+...+++-.++|+|+..
T Consensus 225 ~i~rli~~~~pi~~k~iv~~ltap~~~~~~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~ 304 (790)
T KOG0056|consen 225 IIGRLINVSLPILSKWIVDELTAPDTFQYSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIETELFRHLHN 304 (790)
T ss_pred HHHHHHhhhhHHhHHHHHHhhcCcchhhHHHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHHHHHHHHHHHh
Confidence 34445555556655555554332221122223344444332 345566777778888999999999999999999
Q ss_pred CcccccccCCcchhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH----
Q 000746 1004 APMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIG-IVSTISLWAIMPLLILFYAAYLYY---- 1078 (1303)
Q Consensus 1004 ~p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~~~~~~~~~~i~~~v~i~-~~~~~~~~~~~pl~~~~~~i~~~~---- 1078 (1303)
+++.|+-+..+|+++.-+.+..+.+. .+...+.++...+..+...++..+ ..++++.++++.+..++.......
T Consensus 305 LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWR 383 (790)
T KOG0056|consen 305 LSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMMLLYCYVTIKITEWR 383 (790)
T ss_pred hceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHhheeeeeehhh
Confidence 99999999999999888777776665 555555555555555555444333 235666665555555443322211
Q ss_pred HHHHHHHHHHhhhccchHHHHHHHHhcChhhHhhcCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 1079 QSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGIMIWL 1158 (1303)
Q Consensus 1079 ~~~~r~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~ 1158 (1303)
.+..|++...+.+ -.+.-.+++-+..|+|-|++|+.+.+++.+.++++++..+.....-..++.....+..+..+.
T Consensus 384 Tk~rR~Mn~~~ne----srAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~ 459 (790)
T KOG0056|consen 384 TKARRKMNNSWNE----SRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGLGLLA 459 (790)
T ss_pred HHHHHHhhhhhhh----hhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhh
Confidence 1222223233333 334557899999999999999999999999999999988777666556665555555554444
Q ss_pred HHHHHHHccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCC
Q 000746 1159 IATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWP 1238 (1303)
Q Consensus 1159 ~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp 1238 (1303)
+..+.++. +..+....|...++.+|..++..|++++...+..+|++..-.||+++++++++|.. +.+..+|.-.
T Consensus 460 gsll~aY~---Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVv---d~P~a~pl~~ 533 (790)
T KOG0056|consen 460 GSLLCAYR---VTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVV---DLPGAPPLKV 533 (790)
T ss_pred hhheeeee---eeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhh---cCCCCCCccc
Confidence 44443332 11233446788899999999999999999999999999999999999998766643 3333344445
Q ss_pred CcceEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1239 SSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1239 ~~G~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
.+|.|+|+||+|+|+|+. |||+||||+++||++||+|||||+||||++++|+||||.++|+|+
T Consensus 534 ~~G~i~fsnvtF~Y~p~k-~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~ 596 (790)
T KOG0056|consen 534 TQGKIEFSNVTFAYDPGK-PVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSIT 596 (790)
T ss_pred cCCeEEEEEeEEecCCCC-ceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEE
Confidence 689999999999999874 799999999999999999999999999999999999999999986
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-31 Score=328.24 Aligned_cols=317 Identities=12% Similarity=0.084 Sum_probs=221.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCcchhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 972 VTVTLLNSYWLIISSLRAAKRLHDSMLNSILRAPMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFV 1051 (1303)
Q Consensus 972 ~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~~~~~~~~~~i~~~v 1051 (1303)
.++.++..++....+.++..++|.+++++++++|++||+++++|++++|+++|++.++..+. .+..++..++.+++.++
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~~ 140 (547)
T PRK10522 62 MAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSAA 140 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 34566778888899999999999999999999999999999999999999999999987654 35566667777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHhcChhhHhhcCcH---HHHHHHHHHHHH
Q 000746 1052 LIGIVSTISLWAIMPLLILFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAY---DRMAKINGKSMD 1128 (1303)
Q Consensus 1052 ~i~~~~~~~~~~~~pl~~~~~~i~~~~~~~~r~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e---~~~~~~~~~~~d 1128 (1303)
+++..+|.+.+++++.+++.+++..++.+..++..+...+..+.+++++.|.++|+++++ ++.+ +.+.+++.+..+
T Consensus 141 ~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~ 219 (547)
T PRK10522 141 YLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQ 219 (547)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHH
Confidence 788888877776666555555555555555555555556677889999999999999995 5443 345566666555
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 000746 1129 NNIRFTLANTSSNRWLTIRLETLGGIMIWLIATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSL 1208 (1303)
Q Consensus 1129 ~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~~~~~~~~e~~~ 1208 (1303)
...+.................++..+ ..+.+.+...... . ...+..+.+..+...+..++..+...+.+++...
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~ 293 (547)
T PRK10522 220 EYRHHIIRADTFHLSAVNWSNIMMLG---AIGLVFYMANSLG-W--ADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQ 293 (547)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhh-c--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54443332221111111111111111 1111111111000 0 1122333333344456678888888999999999
Q ss_pred hHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHH
Q 000746 1209 NAVERVGTYIDLPSEAPGMVESNRPPPAWPSSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLN 1288 (1303)
Q Consensus 1209 ~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~ 1288 (1303)
.+.+|+.++.+.++|.+. +...+. |..+.|+|+||+|+|+++ +++|+|+||+|+|||++||||+||||||||++
T Consensus 294 ~a~~ri~~l~~~~~~~~~--~~~~~~---~~~~~i~~~~v~f~y~~~-~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ 367 (547)
T PRK10522 294 VAFNKLNKLALAPYKAEF--PRPQAF---PDWQTLELRNVTFAYQDN-GFSVGPINLTIKRGELLFLIGGNGSGKSTLAM 367 (547)
T ss_pred HHHHHHHHHhcccccccc--cccccc---CcCceEEEEEEEEEeCCC-CeEEecceEEEcCCCEEEEECCCCCCHHHHHH
Confidence 999999999765543211 111111 223689999999999743 57999999999999999999999999999999
Q ss_pred HHhhcccCCCCeee
Q 000746 1289 ALFRIVELERGENI 1302 (1303)
Q Consensus 1289 lL~R~yd~~~G~I~ 1302 (1303)
+|.|+|+|++|+|+
T Consensus 368 ll~g~~~~~~G~i~ 381 (547)
T PRK10522 368 LLTGLYQPQSGEIL 381 (547)
T ss_pred HHhCCCCCCCeEEE
Confidence 99999999999985
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-31 Score=327.98 Aligned_cols=358 Identities=12% Similarity=0.095 Sum_probs=250.6
Q ss_pred HHHHHHHHHHhhhhHHHhhhcccccC-CCCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 000746 927 ACYLSTEVLRISSSTWLSFWTDQSTS-KNYN-PGFYIAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILRA 1004 (1303)
Q Consensus 927 ~~~~~~~~~~~~~~~~l~~w~~~~~~-~~~~-~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~ 1004 (1303)
++.++...+.+..|+.++...|.... .... ...+.++++++.++..++.+++.+.....+.+...++|+++++|+++.
T Consensus 13 ~~~~~~~~~~l~~p~~~~~iid~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~ 92 (544)
T TIGR01842 13 LFSFVINILMLAPPLYMLQVYDRVLTSGSVPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIFAASFSA 92 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33444556666777777777764321 1111 122333444445556677788888889999999999999999999999
Q ss_pred cccccccCCcchhHHHhhccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 1005 PMLFFHTNPIGRVINRFSRDLGDIDRNVAS-FVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLILFYAAYLYYQSTAR 1083 (1303)
Q Consensus 1005 p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~-~~~~~~~~~~~~i~~~v~i~~~~~~~~~~~~pl~~~~~~i~~~~~~~~r 1083 (1303)
|+. ..|..++++++|++.+++.+.. .+..++..++.++. +++++..+|.+.++++...++.+++..+..+..+
T Consensus 93 ~~~-----~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~l~li~l~~~~l~~~i~~~~~~~~~ 166 (544)
T TIGR01842 93 TLR-----RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIY-LLVCFLLHPWIGILALGGAVVLVGLALLNNRATK 166 (544)
T ss_pred ccc-----CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 984 3367789999999999987665 34444444444333 3456666766655444333333333334444445
Q ss_pred HHHHHhhhccchHHHHHHHHhcChhhHhhcCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Q 000746 1084 EVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGI---MIWLIA 1160 (1303)
Q Consensus 1084 ~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~---~~~~~~ 1160 (1303)
+..+...+..+...+++.|+++|+++||+|+.++.+.+++.+..++..+.................++..+ +++..+
T Consensus 167 ~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 246 (544)
T TIGR01842 167 KPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLGLG 246 (544)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555566677888999999999999999999999999988887776655544333333333323222222 222222
Q ss_pred HHHHHccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCc
Q 000746 1161 TFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSS 1240 (1303)
Q Consensus 1161 ~~~v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~ 1240 (1303)
.+.+.. +....|.+..++.+...+..++..+...+..++....+.+|+.++++.++|.+. .... .+.+
T Consensus 247 ~~l~~~------g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~---~~~~---~~~~ 314 (544)
T TIGR01842 247 AYLAID------GEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDP---AMPL---PEPE 314 (544)
T ss_pred HHHHHc------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccC---CCCC---CCCC
Confidence 222221 123467777788888899999999999999999999999999999987655321 1111 1235
Q ss_pred ceEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1241 GSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1241 G~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
+.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|.
T Consensus 315 ~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~ 376 (544)
T TIGR01842 315 GHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVR 376 (544)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 78999999999976556899999999999999999999999999999999999999999985
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-30 Score=298.84 Aligned_cols=328 Identities=15% Similarity=0.181 Sum_probs=242.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCcchhHHHhhccHHHHHHHHHHHHHHHHHHHHH
Q 000746 966 ILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILRAPMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQ 1045 (1303)
Q Consensus 966 ~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~~~~~~~~~ 1045 (1303)
+++++..+..|...+..+....++-.++|.++|+++...+..-..+...|+++||+..|++.+|+..-..+.-.+..+..
T Consensus 66 ~~aI~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~ 145 (573)
T COG4987 66 GLAILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVL 145 (573)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHH
Confidence 34566666777777778889999999999999999999999999999999999999999999998766655555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHhcChhhHhhcCcHHHHHHHHH
Q 000746 1046 LLSTFVLIGIVSTISLWAIMP-LLILFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKING 1124 (1303)
Q Consensus 1046 ~i~~~v~i~~~~~~~~~~~~p-l~~~~~~i~~~~~~~~r~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~~~~~~~ 1124 (1303)
..++.+.+.++++..++.+.. ++++..++-..+.+..|...+.-...+..+.+++.|.+.|....+.||+++++.+.+.
T Consensus 146 ~~~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~ 225 (573)
T COG4987 146 IAVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALE 225 (573)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHH
Confidence 555555565666655433322 2222222333344455666666666778899999999999999999999999999999
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcccccccchhHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 000746 1125 KSMDNNIRFTLANTSSNRWLTIRLETLGGIMIWLIATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVL-RQASR 1203 (1303)
Q Consensus 1125 ~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~~-~~~~~ 1203 (1303)
+.-+...+..........|....+.++.++.+.....+..... ..+.. ......+++..++.....+..+. ....+
T Consensus 226 ~~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~~-~~G~~--~~~~aa~~ll~~f~~~eaf~~L~~~A~~~ 302 (573)
T COG4987 226 ATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQV-GAGAL--AQPGAALALLVIFAALEAFEPLAPGAFQH 302 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cCCCc--chhHHHHHHHHHHHHHHHHhhhcchhHHH
Confidence 9988888888888889999999888887776653333222211 11111 11111122222233444444444 44567
Q ss_pred HhhhhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcc-eEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCC
Q 000746 1204 AENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSG-SIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAG 1282 (1303)
Q Consensus 1204 ~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~G-~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSG 1282 (1303)
+.....|.+|+.++.+.++|...+ +. . . |..| .++++||+|+|+++.++||+|+||++++||||||+||||||
T Consensus 303 lgq~~~Sa~Rl~~i~~q~~e~~~~-~~-~-~---~~~~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsG 376 (573)
T COG4987 303 LGQVIASARRLNDILDQKPEVTFP-DE-Q-T---ATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSG 376 (573)
T ss_pred hhHHHHHHHHHhhhccCCcccCCC-cc-c-c---CCccceeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCC
Confidence 888899999999999887765432 11 1 1 1222 89999999999888779999999999999999999999999
Q ss_pred HHHHHHHHhhcccCCCCeee
Q 000746 1283 KSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1283 KSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|||++++|.|-|||++|+|.
T Consensus 377 KSTllqLl~~~~~~~~G~i~ 396 (573)
T COG4987 377 KSTLLQLLAGAWDPQQGSIT 396 (573)
T ss_pred HHHHHHHHHhccCCCCCeee
Confidence 99999999999999999985
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-29 Score=299.48 Aligned_cols=416 Identities=18% Similarity=0.227 Sum_probs=288.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCcccccCCC-----hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 392 WRVGFRLRSTLVAAIFRKTLRLTHEARKGFP-----SGKVTNMITTDANALQQIS-QQLHGLWSAPFRITLSMVLLYQQL 465 (1303)
Q Consensus 392 ~~~~~~lr~~L~~~i~~k~l~l~~~~~~~~~-----~g~i~nl~s~Dv~~i~~~~-~~~~~~~~~~~~i~~~~~~l~~~l 465 (1303)
.++..+.|..|...+.++-++-....+-... .-..=+++..|+..+.+.. .....+..+.+.++.-...||...
T Consensus 111 ~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~~iLw~ls 190 (604)
T COG4178 111 QMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTGILWSLS 190 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4677888999999999998876532221111 0122368889988777643 333445555555555556677544
Q ss_pred HHHH---------HHHHH--HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHH
Q 000746 466 GVAS---------LLGSL--MLVLMVPLQ----TFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSR 530 (1303)
Q Consensus 466 g~~~---------l~~~~--~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~ 530 (1303)
|... +.+.. ++++.++.. ..+++...+..-+..+.....-.....+-++...|-.|+-|+...++
T Consensus 191 g~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~GE~~Er~~ 270 (604)
T COG4178 191 GGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAIALYRGEKVERRR 270 (604)
T ss_pred CcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHhhHHHHHHhcCcHHHHHH
Confidence 4221 11111 112222222 23444443333332233223233344778889999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHhHHhhhhhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 531 VQSIRDDELSWFRKAQFLSAFNSFILNS---IPVVVTVVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQV 607 (1303)
Q Consensus 531 i~~~r~~e~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~f~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~ 607 (1303)
+++.-..-++..++.............. +..+++ ...++-....|+++.|.+..+...|+.+...+..+...+..+
T Consensus 271 l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P-~li~ap~~f~g~i~~G~lmqa~~aF~~v~sslswfi~~~~~i 349 (604)
T COG4178 271 LDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLP-ILIAAPRYFSGQITFGGLMQAVGAFGQVHSSLSWFIDNYDAI 349 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHH-HHhccHhhhcCcChHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 8766555554444433222222222111 111111 112333456789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhc--CCCCCC--------CCCCCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCC
Q 000746 608 VNANVSLQRLEELLLAEERIL--MPNPPL--------EPELPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTG 677 (1303)
Q Consensus 608 ~~a~~s~~Ri~~~l~~~~~~~--~~~~~~--------~~~~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sG 677 (1303)
.+-+++..|+.+|-..-+... ...+.. +.....|+++|++..-|+..+.+++.|+++++|+.+.|.|+||
T Consensus 350 a~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG 429 (604)
T COG4178 350 ADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESG 429 (604)
T ss_pred HHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCC
Confidence 999999999999976543111 000100 1014679999999999887789999999999999999999999
Q ss_pred CChHHHHHHHhcCCCCCCCceEEE-cCeEEEEccCcccccccHHHHHccCCC---CChhhHHHHHHHHhhHHHhhcCCCC
Q 000746 678 EGKTSLVSAMLGELPPLKDASVVI-RGTVAYVPQISWIFNATLRKNILFGSE---FDPAKYWKTVDVSALQHDLDLLPDR 753 (1303)
Q Consensus 678 sGKSTLl~~llg~~~~~~g~~~~~-~~~iayv~Q~p~l~~~TireNI~~g~~---~~~~~~~~vl~~~~l~~~i~~lp~g 753 (1303)
||||||+++|.|+.|--+|....- ...+-|+||.|.+..||+||-|++.+. ++++++.+++.+|+|.+.++.+.+-
T Consensus 430 ~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~ 509 (604)
T COG4178 430 AGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEE 509 (604)
T ss_pred CCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhcc
Confidence 999999999999998877654433 234899999999999999999998752 7899999999999999999887654
Q ss_pred CCccccCCCCCCchHHHHHHHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCcccccCEEE
Q 000746 754 DLTEIGERGVNISGGQKQRVSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFLPHVDRII 810 (1303)
Q Consensus 754 ~~T~ige~G~~LSGGQkQRiaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii 810 (1303)
++ -..-||||||||||+||.+++ +.+++.+.+.|+|-|.||.......++.+
T Consensus 510 ~~-----W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l 584 (604)
T COG4178 510 DR-----WDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQL 584 (604)
T ss_pred Cc-----HhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhhe
Confidence 43 446799999999999999753 34567778999999999999888888877
Q ss_pred EEe
Q 000746 811 LVS 813 (1303)
Q Consensus 811 ~l~ 813 (1303)
.++
T Consensus 585 ~l~ 587 (604)
T COG4178 585 ELL 587 (604)
T ss_pred eec
Confidence 664
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-31 Score=358.15 Aligned_cols=169 Identities=22% Similarity=0.337 Sum_probs=126.8
Q ss_pred CccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCC----CCCCCceEEE------------cCeEEEEccCcccc-cc
Q 000746 655 PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGEL----PPLKDASVVI------------RGTVAYVPQISWIF-NA 717 (1303)
Q Consensus 655 ~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~----~~~~g~~~~~------------~~~iayv~Q~p~l~-~~ 717 (1303)
++|+|+|+++++||+++|+||||||||||+++|.|.. .|.+|. +.+ ++.++|++|++.++ +.
T Consensus 75 ~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~-I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~l 153 (1394)
T TIGR00956 75 DILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGV-ITYDGITPEEIKKHYRGDVVYNAETDVHFPHL 153 (1394)
T ss_pred eeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeE-EEECCEehHHHHhhcCceeEEeccccccCCCC
Confidence 5899999999999999999999999999999999986 356664 332 34599999998777 46
Q ss_pred cHHHHHccCCC----------CChhhHHH-HHHHHhhHHHhhcCCCCCCccccCC-CCCCchHHHHHHHHHHHHHH----
Q 000746 718 TLRKNILFGSE----------FDPAKYWK-TVDVSALQHDLDLLPDRDLTEIGER-GVNISGGQKQRVSMARAVFN---- 781 (1303)
Q Consensus 718 TireNI~~g~~----------~~~~~~~~-vl~~~~l~~~i~~lp~g~~T~ige~-G~~LSGGQkQRiaLARAl~~---- 781 (1303)
|++||+.|+.. .+++++.+ +.+. +.+.+ .+.+-.+|.||+. ...||||||||++||||++.
T Consensus 154 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~l-gL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~v 230 (1394)
T TIGR00956 154 TVGETLDFAARCKTPQNRPDGVSREEYAKHIADV--YMATY-GLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKI 230 (1394)
T ss_pred CHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH--HHHHc-CcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCE
Confidence 99999988521 22222221 1111 11112 3445567888864 45799999999999999653
Q ss_pred -------------------HHHhHhc--CCCEEEEEecCCC-c-ccccCEEEEEeCCEEEEecCHHHHH
Q 000746 782 -------------------SCIKEEL--RGKTRILVTNQLH-F-LPHVDRIILVSEGMIKEEGSFEELS 827 (1303)
Q Consensus 782 -------------------~~i~~~~--~~~TvilvtH~~~-~-l~~aD~ii~l~~G~i~~~g~~~~l~ 827 (1303)
+.+++.. .|+|+|+++|++. . ...+|+|++|++|+++..|+.+++.
T Consensus 231 lllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~ 299 (1394)
T TIGR00956 231 QCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAK 299 (1394)
T ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHH
Confidence 2344433 3799999999974 3 4679999999999999999998874
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-33 Score=284.45 Aligned_cols=179 Identities=32% Similarity=0.503 Sum_probs=144.3
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-------------EcCeEE
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-------------IRGTVA 706 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-------------~~~~ia 706 (1303)
.|+++|++.+|++ ..+|+|||++|++||.++|+|||||||||||++|.|+-+|++|.+.. +|+++|
T Consensus 2 mi~i~~l~K~fg~-~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vG 80 (240)
T COG1126 2 MIEIKNLSKSFGD-KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVG 80 (240)
T ss_pred eEEEEeeeEEeCC-eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcC
Confidence 4899999999975 46999999999999999999999999999999999999999874321 244689
Q ss_pred EEccCcccc-cccHHHHHccCC----CCCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHH
Q 000746 707 YVPQISWIF-NATLRKNILFGS----EFDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMAR 777 (1303)
Q Consensus 707 yv~Q~p~l~-~~TireNI~~g~----~~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLAR 777 (1303)
+|+|+..|| +.|+.|||..+. ..+. ++-.+.++..+|.+-.+..| .+||||||||+||||
T Consensus 81 mVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----------~qLSGGQqQRVAIAR 149 (240)
T COG1126 81 MVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP-----------AQLSGGQQQRVAIAR 149 (240)
T ss_pred eecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc-----------cccCcHHHHHHHHHH
Confidence 999999999 679999999863 2222 23344555566665555444 679999999999999
Q ss_pred HH--------HH------------H---HHhHhc-CCCEEEEEecCCCcccc-cCEEEEEeCCEEEEecCHHHHHhcc
Q 000746 778 AV--------FN------------S---CIKEEL-RGKTRILVTNQLHFLPH-VDRIILVSEGMIKEEGSFEELSKHG 830 (1303)
Q Consensus 778 Al--------~~------------~---~i~~~~-~~~TvilvtH~~~~l~~-aD~ii~l~~G~i~~~g~~~~l~~~~ 830 (1303)
|+ || + .+.+.. .|.|.|+|||.+.+.+. ||||+.|++|+|+++|+++++..++
T Consensus 150 ALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p 227 (240)
T COG1126 150 ALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNP 227 (240)
T ss_pred HHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCC
Confidence 94 22 2 222322 68999999999999875 8999999999999999999987653
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-29 Score=295.97 Aligned_cols=336 Identities=18% Similarity=0.217 Sum_probs=263.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCcchhHHHhhccHHHHHHHHHHHHHH
Q 000746 959 FYIAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILRAPMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNM 1038 (1303)
Q Consensus 959 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~~ 1038 (1303)
.+++.+++..++..+....+.....+++.++..++|+++++++.+.+..|-++.|+|+..+.++.-++.++..+..+++.
T Consensus 41 ~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq 120 (559)
T COG4988 41 PLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQ 120 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556667777777788888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHhcChhhHhhcCc
Q 000746 1039 FMNQLWQLLSTFVLIGIVSTISLWA---IMPLLILFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAFKA 1115 (1303)
Q Consensus 1039 ~~~~~~~~i~~~v~i~~~~~~~~~~---~~pl~~~~~~i~~~~~~~~r~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~ 1115 (1303)
++...+..+..++.++..+|..+++ ..|++++++++ .....+...+..-.+...+.++|.+.+.|+.|+|+|+.
T Consensus 121 ~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMil---vg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~ 197 (559)
T COG4988 121 MFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMIL---VGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGR 197 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcc
Confidence 8888887777777778777765544 44555555443 33334444444455667889999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcccccccchhHHHHHHHHHHHHHHHHH
Q 000746 1116 YDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGIMIWLIATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLS 1195 (1303)
Q Consensus 1116 e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~ 1195 (1303)
.+...++..+..++..+..+.....+.-.+..+|++..+.+.+++++....-...+....+.+.+.+. .+..+..|+.
T Consensus 198 ~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~Li--LAPEff~PlR 275 (559)
T COG4988 198 TEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLI--LAPEFFQPLR 275 (559)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHH--HhHHHHHHHH
Confidence 99999999998888888888888888788888999888877777666554221101222334444443 4567889999
Q ss_pred HHHHHHHHHhhhhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceeeecCCCEEEE
Q 000746 1196 GVLRQASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGI 1275 (1303)
Q Consensus 1196 ~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaI 1275 (1303)
.+...+..-.++.++.+.+..+++.|.+.++..+ .....|....+|+.+|++|+|+++. ++++|+||+++|||++||
T Consensus 276 ~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~--~~~~~~~~~~ei~~~~l~~~y~~g~-~~l~~l~~t~~~g~~tal 352 (559)
T COG4988 276 DLGSFFHAAAAGEAAADKLFTLLESPVATPGSGE--KAEVANEPPIEISLENLSFRYPDGK-PALSDLNLTIKAGQLTAL 352 (559)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCcc--ccccccCCCceeeecceEEecCCCC-cccCCceeEecCCcEEEE
Confidence 9999999889999999999999988766543221 1122333345777779999998764 899999999999999999
Q ss_pred ECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1276 VGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1276 VGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
||+||||||||+++|.+|++|++|+|.
T Consensus 353 vG~SGaGKSTLl~lL~G~~~~~~G~I~ 379 (559)
T COG4988 353 VGASGAGKSTLLNLLLGFLAPTQGEIR 379 (559)
T ss_pred ECCCCCCHHHHHHHHhCcCCCCCceEE
Confidence 999999999999999999999999985
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-30 Score=326.66 Aligned_cols=378 Identities=11% Similarity=0.060 Sum_probs=273.9
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHhhhcccccCCCCC-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 922 IMILFACYLSTEVLRISSSTWLSFWTDQSTSKNYN-----PGFYIAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDS 996 (1303)
Q Consensus 922 ~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~-----~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~ 996 (1303)
+++.+++.++...+.+..+++.+...|.....+.. ...+.++++++.++..+..++..++......++.+++|++
T Consensus 98 l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~ 177 (659)
T TIGR00954 98 LILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKYLLKELKLRFRVRLTRYLYSK 177 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455566677888888888877754322111 1112223334444555566666777778888999999999
Q ss_pred HHHHHHcCcccccccCCcchhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 000746 997 MLNSILRAPMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGI-VSTISLWAIMPLLILFYAAY 1075 (1303)
Q Consensus 997 l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~~~~~~~~~~i~~~v~i~~-~~~~~~~~~~pl~~~~~~i~ 1075 (1303)
.+++....++.|||+ ++|++++|+++|++.+.+.+...+..++..++.+++.++.+.. .+|.+.++++...++..++.
T Consensus 178 ~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l~~~i~ 256 (659)
T TIGR00954 178 YLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFATGVVL 256 (659)
T ss_pred HhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 999999999999997 8999999999999999999988888888888887776666664 66766666666666667777
Q ss_pred HHHHHHHHHHHHHhhhccchHHHHHHHHhcChhhHhhcCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-
Q 000746 1076 LYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGI- 1154 (1303)
Q Consensus 1076 ~~~~~~~r~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~- 1154 (1303)
+++.+..+++.+..++..+.+.+.++|.++|+++||+|+.++.+.+++.+..++..+..........+.....+++...
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~ 336 (659)
T TIGR00954 257 TKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIVAKYT 336 (659)
T ss_pred HHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 7888888888888888889999999999999999999999999999998888888777777766666776666655431
Q ss_pred ---HHHHHH-HHHHHccCcccccccchhH-HHHHHH---HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcCCCCCCC
Q 000746 1155 ---MIWLIA-TFAVMQNGRAENQVAFAST-MGLLLS---YTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAPG 1226 (1303)
Q Consensus 1155 ---~~~~~~-~~~v~~~~~~~~~~~~~~~-~gl~l~---~~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~ 1226 (1303)
+.++++ .......+.. .+....+. ++.++. +..++..++..+.....+++...++.+|+.++++.++|...
T Consensus 337 ~~~~~~~~~g~~~~~~~~~~-~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~ 415 (659)
T TIGR00954 337 WSAVGLVAVSIPIFDKTHPA-FLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKS 415 (659)
T ss_pred HHHHHHHHHHHHHHhccccc-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 111111 1111111000 01112222 332333 35677888999999999999999999999999976433110
Q ss_pred ------CCCC-CC-----------C--CCCCCCcceEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHH
Q 000746 1227 ------MVES-NR-----------P--PPAWPSSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSM 1286 (1303)
Q Consensus 1227 ------~~~~-~~-----------~--~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTL 1286 (1303)
..+. .. + .......|.|+|+||+|+|+++ +++|+|+||+|++||++||||++|||||||
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~-~~il~~isl~i~~Ge~~~IvG~nGsGKSTL 494 (659)
T TIGR00954 416 GNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG-DVLIESLSFEVPSGNHLLICGPNGCGKSSL 494 (659)
T ss_pred ccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC-CeeeecceEEECCCCEEEEECCCCCCHHHH
Confidence 0000 00 0 0001134679999999999644 479999999999999999999999999999
Q ss_pred HHHHhhcccCCCCeee
Q 000746 1287 LNALFRIVELERGENI 1302 (1303)
Q Consensus 1287 i~lL~R~yd~~~G~I~ 1302 (1303)
+++|.|+|+|++|+|.
T Consensus 495 l~lL~Gl~~~~~G~i~ 510 (659)
T TIGR00954 495 FRILGELWPVYGGRLT 510 (659)
T ss_pred HHHHhCCCCCCCCeEe
Confidence 9999999999999985
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-31 Score=312.68 Aligned_cols=181 Identities=24% Similarity=0.415 Sum_probs=134.3
Q ss_pred cEEEEeeEEEeCCCC---CccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCC---CceEEE------------
Q 000746 640 AVSIKNGNFSWDSKS---PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLK---DASVVI------------ 701 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~---~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~---g~~~~~------------ 701 (1303)
.++++|++..|.... ++++||||++.+||.++|+|.|||||||++++|+|++++.. +|.+.+
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 689999999996443 58999999999999999999999999999999999998761 234432
Q ss_pred -----cCeEEEEccCcc-cccc--cHHHHHc----cCCCCC-h---hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCC
Q 000746 702 -----RGTVAYVPQISW-IFNA--TLRKNIL----FGSEFD-P---AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNI 765 (1303)
Q Consensus 702 -----~~~iayv~Q~p~-l~~~--TireNI~----~g~~~~-~---~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~L 765 (1303)
.+.|||++|+|+ .+|- ||.+-|. ...+.+ + ++..+.++..++ |+.... ..-...|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl-------~~~~~~--~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGL-------PDPERR--DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCC-------CChhhh--ccCCccc
Confidence 246999999996 4553 6655554 222222 1 222333333333 332222 3456789
Q ss_pred chHHHHHHHHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEEE
Q 000746 766 SGGQKQRVSMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIKE 819 (1303)
Q Consensus 766 SGGQkQRiaLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~ 819 (1303)
|||||||+.||+|+.. +.+++.. .|.++|+|||++..+. .||+|+||.+|+++|
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999531 2233333 5899999999999975 599999999999999
Q ss_pred ecCHHHHHhc
Q 000746 820 EGSFEELSKH 829 (1303)
Q Consensus 820 ~g~~~~l~~~ 829 (1303)
.|+.+++.++
T Consensus 236 ~G~~~~i~~~ 245 (539)
T COG1123 236 TGPTEEILSN 245 (539)
T ss_pred ecCHHHHHhc
Confidence 9999998764
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-30 Score=295.10 Aligned_cols=194 Identities=38% Similarity=0.666 Sum_probs=168.4
Q ss_pred CCCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcCeEEEEccCccccc
Q 000746 637 ELPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISWIFN 716 (1303)
Q Consensus 637 ~~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~~iayv~Q~p~l~~ 716 (1303)
..+.++++|+++. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|.+| .+.+.+.|+|++|++++++
T Consensus 36 ~~~~l~i~nls~~---~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G-~I~i~g~i~yv~q~~~l~~ 111 (282)
T cd03291 36 DDNNLFFSNLCLV---GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEG-KIKHSGRISFSSQFSWIMP 111 (282)
T ss_pred CCCeEEEEEEEEe---cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEEEEEeCcccccc
Confidence 3456999999996 24699999999999999999999999999999999999999886 6778889999999999999
Q ss_pred ccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH---------------
Q 000746 717 ATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN--------------- 781 (1303)
Q Consensus 717 ~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~--------------- 781 (1303)
.|++||+.++...++.++.+.++.+++.+.+..+|.+.++.+++++.+||||||||++||||++.
T Consensus 112 ~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD 191 (282)
T cd03291 112 GTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLD 191 (282)
T ss_pred cCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCC
Confidence 99999999876555556777888888988899999999999999999999999999999999542
Q ss_pred --------H-HHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhcchHHH
Q 000746 782 --------S-CIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQ 834 (1303)
Q Consensus 782 --------~-~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~~~~~ 834 (1303)
+ .+....+++|+|++||+++.+..||++++|++|++++.|+++++......+.
T Consensus 192 ~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~ 253 (282)
T cd03291 192 VFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSLRPDFS 253 (282)
T ss_pred HHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhcchHHH
Confidence 1 1223335789999999999998999999999999999999999876544444
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.6e-29 Score=283.10 Aligned_cols=334 Identities=17% Similarity=0.222 Sum_probs=234.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCcchhHHHhhccHHHHHHHHHHHHHH
Q 000746 959 FYIAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILRAPMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNM 1038 (1303)
Q Consensus 959 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~~ 1038 (1303)
..+..|.+..+++.++..++.+.+.+..+++.++.-.+.|++.+.+.++||.+..+|.+.+++..-...|...+...+..
T Consensus 75 ~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~ 154 (591)
T KOG0057|consen 75 ALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVFN 154 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHH
Confidence 45567888888889999999999999999999999999999999999999999999999999988888888877777777
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHhcChhhHhhcCcHH
Q 000746 1039 FMNQLWQLLSTFVLIGIV-STISLWAIMPLLILFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYD 1117 (1303)
Q Consensus 1039 ~~~~~~~~i~~~v~i~~~-~~~~~~~~~pl~~~~~~i~~~~~~~~r~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~ 1117 (1303)
++..++.+......+.+- .+...++++..+..|..+..+..+...+.++....+.........|++.+-.+||+|+.|+
T Consensus 155 i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~ 234 (591)
T KOG0057|consen 155 IIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEE 234 (591)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHH
Confidence 776665544333222221 2222222222222222111111122222333444445556678899999999999999999
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcccccccchhHHHHHHHHHHHHHHHHHHH
Q 000746 1118 RMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGIMIWLIATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGV 1197 (1303)
Q Consensus 1118 ~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~ 1197 (1303)
++.+++...+.+..+......+....+.+....+.......+..++..+ ...+....+.+.+..+...++..+++.+
T Consensus 235 ~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~~~g---i~~~~mtvgdlv~~n~l~~qL~~~l~~L 311 (591)
T KOG0057|consen 235 YEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIMVLGSNG---IAAGKMTVGDLVMVNSLLFQLSLPLNFL 311 (591)
T ss_pred HHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhhccccccchhhHHHHHHHHHhHHHHH
Confidence 9999999999888887776665555555444444433333332222221 1112233566677777788888888888
Q ss_pred HHHHHHHhhhhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceeeecCCCEEEEEC
Q 000746 1198 LRQASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVG 1277 (1303)
Q Consensus 1198 ~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVG 1277 (1303)
...+.++..++.-.+-.+...+... +..+. +.+.-..+|.|+|+||+|+|.|+ ++||+|+||+|++||||||||
T Consensus 312 g~vyr~~~q~l~Dm~~~~~l~~~~~---~i~~~--~~~i~~~~~~I~F~dV~f~y~~k-~~iL~gvsf~I~kGekVaIvG 385 (591)
T KOG0057|consen 312 GSVYRELRQALTDMRTLFILLEVDE---DIQEA--ALPIELFGGSIEFDDVHFSYGPK-RKVLKGVSFTIPKGEKVAIVG 385 (591)
T ss_pred HHHHHHHHHHHHhHHHHHhhhhhhh---hhhhc--cCCcccCCCcEEEEeeEEEeCCC-CceecceeEEecCCCEEEEEC
Confidence 8888777776665555544322111 11111 12222356789999999999865 579999999999999999999
Q ss_pred CCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1278 RTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1278 rTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
++||||||++++|+||+| .+|+|+
T Consensus 386 ~nGsGKSTilr~LlrF~d-~sG~I~ 409 (591)
T KOG0057|consen 386 SNGSGKSTILRLLLRFFD-YSGSIL 409 (591)
T ss_pred CCCCCHHHHHHHHHHHhc-cCCcEE
Confidence 999999999999999999 999986
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=99.97 E-value=7e-31 Score=292.41 Aligned_cols=196 Identities=30% Similarity=0.504 Sum_probs=167.1
Q ss_pred EEEEeeEEEeCC-CCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE-------------cCeEE
Q 000746 641 VSIKNGNFSWDS-KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI-------------RGTVA 706 (1303)
Q Consensus 641 i~~~~~~f~~~~-~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~-------------~~~ia 706 (1303)
++++|+++.|+. +.++++|+||++++||+++|+|+||||||||+++|+|+++|++|. +.+ ++.++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGR-VLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCE-EEECCeehHhcCHHHHhhcEE
Confidence 468999999964 347999999999999999999999999999999999999999874 332 24599
Q ss_pred EEccCcccccccHHHHHccCCC-CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH----
Q 000746 707 YVPQISWIFNATLRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN---- 781 (1303)
Q Consensus 707 yv~Q~p~l~~~TireNI~~g~~-~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~---- 781 (1303)
|++|++++++.|++||+.++.. .+.++..+.++..++.+.++.+|.|.++..+..+.+||||||||++||||++.
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 9999999999999999998653 34455566667677888889999999998889999999999999999999642
Q ss_pred -------------------HHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhcchHHHHHH
Q 000746 782 -------------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLM 837 (1303)
Q Consensus 782 -------------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~ 837 (1303)
+.+.+..+++|+|++||+++.+..||++++|++|++++.|+++++.++.+.|..+.
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 234 (237)
T cd03252 160 LIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLY 234 (237)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhccChHHHHH
Confidence 33444446899999999999998899999999999999999999988777776543
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-30 Score=292.03 Aligned_cols=200 Identities=22% Similarity=0.374 Sum_probs=171.3
Q ss_pred CCcEEEEeeEEEeCCC-CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------EcCe
Q 000746 638 LPAVSIKNGNFSWDSK-SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------IRGT 704 (1303)
Q Consensus 638 ~~~i~~~~~~f~~~~~-~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------~~~~ 704 (1303)
.+.++++|++++|++. .++++|+||++++||+++|+|+||||||||+++|+|+++|.+|.+.. .+..
T Consensus 17 ~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~ 96 (257)
T cd03288 17 GGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSR 96 (257)
T ss_pred CceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhh
Confidence 3579999999999753 46999999999999999999999999999999999999999875331 1346
Q ss_pred EEEEccCcccccccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH---
Q 000746 705 VAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN--- 781 (1303)
Q Consensus 705 iayv~Q~p~l~~~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~--- 781 (1303)
|+|++|+|++|++|++||+......+++++.++++..++.+.++.+|.|+++.+++.+.+||||||||++||||++.
T Consensus 97 i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ 176 (257)
T cd03288 97 LSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSS 176 (257)
T ss_pred EEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998765445666778888889999999999999999999999999999999999999542
Q ss_pred --------------------HHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhc-chHHHHHH
Q 000746 782 --------------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKH-GRLFQKLM 837 (1303)
Q Consensus 782 --------------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~-~~~~~~l~ 837 (1303)
+.+.+..+++|+|++||+++.+..||+|++|++|++++.|+++++.+. ++.|++++
T Consensus 177 llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 253 (257)
T cd03288 177 ILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLV 253 (257)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHHH
Confidence 334444468999999999999988999999999999999999998764 34565554
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-31 Score=271.63 Aligned_cols=184 Identities=24% Similarity=0.372 Sum_probs=153.2
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCce----EE--------------
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDAS----VV-------------- 700 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~----~~-------------- 700 (1303)
..++++|+++.|++ ..+|+|||++|++++++|++|||||||||||+++-+..+..+|.. +.
T Consensus 6 ~~~~~~~l~~yYg~-~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~ 84 (253)
T COG1117 6 PAIEVRDLNLYYGD-KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVV 84 (253)
T ss_pred ceeEecceeEEECc-hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHH
Confidence 46899999999974 479999999999999999999999999999999999988776422 11
Q ss_pred -EcCeEEEEccCcccccccHHHHHccCCC---CC----hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHH
Q 000746 701 -IRGTVAYVPQISWIFNATLRKNILFGSE---FD----PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQR 772 (1303)
Q Consensus 701 -~~~~iayv~Q~p~l~~~TireNI~~g~~---~~----~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQR 772 (1303)
+|++||.|+|.|--|..||.|||.+|.. .. ++..++.++.++|.+.+.. .+.+.+..|||||+||
T Consensus 85 ~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQQR 157 (253)
T COG1117 85 ELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQQR 157 (253)
T ss_pred HHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHHHH
Confidence 4678999999999999999999999843 11 3456778888888877643 2446788899999999
Q ss_pred HHHHHHH-----------------------HHHHHhHhcCCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHHh
Q 000746 773 VSMARAV-----------------------FNSCIKEELRGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 773 iaLARAl-----------------------~~~~i~~~~~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
+|||||| +++.+.+..++-|+|+|||+++.. +-+|+...+-+|+++|.|+.+++..
T Consensus 158 LcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF~ 237 (253)
T COG1117 158 LCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFT 237 (253)
T ss_pred HHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhhc
Confidence 9999994 234566666788999999999875 5589999999999999999988865
Q ss_pred cc
Q 000746 829 HG 830 (1303)
Q Consensus 829 ~~ 830 (1303)
++
T Consensus 238 ~P 239 (253)
T COG1117 238 NP 239 (253)
T ss_pred Cc
Confidence 43
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=282.23 Aligned_cols=175 Identities=56% Similarity=0.952 Sum_probs=155.1
Q ss_pred EEEEeeEEEeCCC----CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcCeEEEEccCccccc
Q 000746 641 VSIKNGNFSWDSK----SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISWIFN 716 (1303)
Q Consensus 641 i~~~~~~f~~~~~----~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~~iayv~Q~p~l~~ 716 (1303)
++++|+++.|+++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++| .+.++++|+|++|+|.+++
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G-~i~~~g~i~~~~q~~~l~~ 79 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG-SVSVPGSIAYVSQEPWIQN 79 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCC-eEEEcCEEEEEecCchhcc
Confidence 4789999999764 3699999999999999999999999999999999999999987 5677889999999999999
Q ss_pred ccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH---------------
Q 000746 717 ATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN--------------- 781 (1303)
Q Consensus 717 ~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~--------------- 781 (1303)
.|++||+.++..+++++..++++.+++.+.+..+|.|++|.+++++.+||||||||++||||+..
T Consensus 80 ~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD 159 (204)
T cd03250 80 GTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVD 159 (204)
T ss_pred CcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence 99999999987777777788888889999999999999999999999999999999999999542
Q ss_pred --------H-HHhHhc-CCCEEEEEecCCCcccccCEEEEEeCCE
Q 000746 782 --------S-CIKEEL-RGKTRILVTNQLHFLPHVDRIILVSEGM 816 (1303)
Q Consensus 782 --------~-~i~~~~-~~~TvilvtH~~~~l~~aD~ii~l~~G~ 816 (1303)
+ .+.... +++|+|++||+++.+..+|++++|++|+
T Consensus 160 ~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 160 AHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 1 222222 3689999999999988899999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-31 Score=284.37 Aligned_cols=179 Identities=26% Similarity=0.426 Sum_probs=143.0
Q ss_pred EEEEeeEEEeCCC----CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE---------------E
Q 000746 641 VSIKNGNFSWDSK----SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV---------------I 701 (1303)
Q Consensus 641 i~~~~~~f~~~~~----~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~---------------~ 701 (1303)
|+++++++.|... ..+|+||||+|++||+.+|+|+||+|||||++++-++-.|++|.+.. .
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7899999999762 26899999999999999999999999999999999999999986542 3
Q ss_pred cCeEEEEccCccccc-ccHHHHHccCCC---CCh-hhHHHHHH---HHhhHHHhhcCCCCCCccccCCCCCCchHHHHHH
Q 000746 702 RGTVAYVPQISWIFN-ATLRKNILFGSE---FDP-AKYWKTVD---VSALQHDLDLLPDRDLTEIGERGVNISGGQKQRV 773 (1303)
Q Consensus 702 ~~~iayv~Q~p~l~~-~TireNI~~g~~---~~~-~~~~~vl~---~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRi 773 (1303)
|++||+++|++.|++ .||.|||.|.-+ .++ +...+|.+ ..+|.+. -+....+|||||||||
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk-----------~~~yP~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDK-----------ADRYPAQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhh-----------hccCchhcCcchhhHH
Confidence 568999999999996 799999999754 222 23333433 3333322 2334578999999999
Q ss_pred HHHHHHHH-------------------HHHhHhc------CCCEEEEEecCCCcccc-cCEEEEEeCCEEEEecCHHHHH
Q 000746 774 SMARAVFN-------------------SCIKEEL------RGKTRILVTNQLHFLPH-VDRIILVSEGMIKEEGSFEELS 827 (1303)
Q Consensus 774 aLARAl~~-------------------~~i~~~~------~~~TvilvtH~~~~l~~-aD~ii~l~~G~i~~~g~~~~l~ 827 (1303)
+||||+.. +.|.+.+ -|-|+++|||.++.++. |||+.+|++|+++|+|+..++.
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 99999642 1121221 48999999999999875 9999999999999999999987
Q ss_pred hcc
Q 000746 828 KHG 830 (1303)
Q Consensus 828 ~~~ 830 (1303)
.++
T Consensus 231 ~~P 233 (339)
T COG1135 231 ANP 233 (339)
T ss_pred cCc
Confidence 654
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-29 Score=312.91 Aligned_cols=185 Identities=23% Similarity=0.299 Sum_probs=136.0
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-EcCeEEEEccCccccc-c
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-IRGTVAYVPQISWIFN-A 717 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-~~~~iayv~Q~p~l~~-~ 717 (1303)
.++++|++++|+++.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+.. .+..|+|++|+|+++. .
T Consensus 4 ~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~ 83 (552)
T TIGR03719 4 IYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPTK 83 (552)
T ss_pred EEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCCCC
Confidence 5899999999973357999999999999999999999999999999999999999875432 1357999999999884 6
Q ss_pred cHHHHHccCCCC------------------Ch---------hhHHHHHHHHhhH-------HHhhcCCCCCCccccCCCC
Q 000746 718 TLRKNILFGSEF------------------DP---------AKYWKTVDVSALQ-------HDLDLLPDRDLTEIGERGV 763 (1303)
Q Consensus 718 TireNI~~g~~~------------------~~---------~~~~~vl~~~~l~-------~~i~~lp~g~~T~ige~G~ 763 (1303)
|++|||.++... ++ +++.++++.++.. +.++.+ |.. .......
T Consensus 84 tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~-~~~~~~~ 160 (552)
T TIGR03719 84 TVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL--RCP-PWDADVT 160 (552)
T ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC--CCC-cccCchh
Confidence 999999875210 01 1233333333321 122222 111 1234567
Q ss_pred CCchHHHHHHHHHHHHHH-------------------HHHhHhc--CCCEEEEEecCCCcccc-cCEEEEEeCCEEE-Ee
Q 000746 764 NISGGQKQRVSMARAVFN-------------------SCIKEEL--RGKTRILVTNQLHFLPH-VDRIILVSEGMIK-EE 820 (1303)
Q Consensus 764 ~LSGGQkQRiaLARAl~~-------------------~~i~~~~--~~~TvilvtH~~~~l~~-aD~ii~l~~G~i~-~~ 820 (1303)
+||||||||++||||++. +.+.+.+ .+.|+|+|||+++.+.. ||+|++|++|+++ ..
T Consensus 161 ~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d~v~~l~~g~i~~~~ 240 (552)
T TIGR03719 161 KLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWILELDRGRGIPWE 240 (552)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEECCEEEEec
Confidence 899999999999999642 1122222 14699999999998765 8999999999976 67
Q ss_pred cCHHHHH
Q 000746 821 GSFEELS 827 (1303)
Q Consensus 821 g~~~~l~ 827 (1303)
|++++..
T Consensus 241 g~~~~~~ 247 (552)
T TIGR03719 241 GNYSSWL 247 (552)
T ss_pred CCHHHHH
Confidence 8877654
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-31 Score=275.50 Aligned_cols=178 Identities=26% Similarity=0.405 Sum_probs=144.2
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------EcCeEEEE
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------IRGTVAYV 708 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------~~~~iayv 708 (1303)
|+++|+++.|.+ ..+++|+||+|++||+++++|||||||||+|+.|.|+++|++|.+.. +|.+||||
T Consensus 2 I~~~nvsk~y~~-~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYv 80 (309)
T COG1125 2 IEFENVSKRYGN-KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYV 80 (309)
T ss_pred ceeeeeehhcCC-ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhh
Confidence 789999999984 57999999999999999999999999999999999999999985432 46789999
Q ss_pred ccCcccc-cccHHHHHccCC---CCChhhH----HHHHHHHhhHH--HhhcCCCCCCccccCCCCCCchHHHHHHHHHHH
Q 000746 709 PQISWIF-NATLRKNILFGS---EFDPAKY----WKTVDVSALQH--DLDLLPDRDLTEIGERGVNISGGQKQRVSMARA 778 (1303)
Q Consensus 709 ~Q~p~l~-~~TireNI~~g~---~~~~~~~----~~vl~~~~l~~--~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARA 778 (1303)
-|+.-|| +.||.|||..-- .+++++. .+.++..+|+. ..+. ....|||||+|||.+|||
T Consensus 81 iQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~R-----------yP~eLSGGQQQRVGv~RA 149 (309)
T COG1125 81 IQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADR-----------YPHELSGGQQQRVGVARA 149 (309)
T ss_pred hhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhc-----------CchhcCcchhhHHHHHHH
Confidence 9999999 789999998653 3566544 34444455542 1222 346799999999999999
Q ss_pred HHH-------------------HHHhHh----c--CCCEEEEEecCCCc-ccccCEEEEEeCCEEEEecCHHHHHhcc
Q 000746 779 VFN-------------------SCIKEE----L--RGKTRILVTNQLHF-LPHVDRIILVSEGMIKEEGSFEELSKHG 830 (1303)
Q Consensus 779 l~~-------------------~~i~~~----~--~~~TvilvtH~~~~-l~~aD~ii~l~~G~i~~~g~~~~l~~~~ 830 (1303)
+.. +.+.+. . -++|+|+|||+++. ++.+|||.+|++|+|++.|+|+++.+++
T Consensus 150 LAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~P 227 (309)
T COG1125 150 LAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANP 227 (309)
T ss_pred HhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCc
Confidence 521 122211 1 38999999999987 7889999999999999999999998764
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=293.35 Aligned_cols=179 Identities=31% Similarity=0.446 Sum_probs=149.3
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----------EcCeEEEEc
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----------IRGTVAYVP 709 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----------~~~~iayv~ 709 (1303)
.|+++|++..|++.. +++|+||+|++||+++++|||||||||||++|+|+.+|++|.+.. .++.||+|+
T Consensus 3 ~i~l~~v~K~yg~~~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVF 81 (338)
T COG3839 3 ELELKNVRKSFGSFE-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVF 81 (338)
T ss_pred EEEEeeeEEEcCCce-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEe
Confidence 589999999998654 999999999999999999999999999999999999999875432 135799999
Q ss_pred cCcccc-cccHHHHHccCCCC-------ChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH
Q 000746 710 QISWIF-NATLRKNILFGSEF-------DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN 781 (1303)
Q Consensus 710 Q~p~l~-~~TireNI~~g~~~-------~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~ 781 (1303)
|+..|+ +.||+|||.|+-.. .++++.++.+..++++.++..| ..|||||||||||||||+.
T Consensus 82 Q~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRVAlaRAlVr 150 (338)
T COG3839 82 QNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRVALARALVR 150 (338)
T ss_pred CCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHHHHHHHHhc
Confidence 999998 56999999998653 2456777888888887777655 5699999999999999753
Q ss_pred H---------------H--------HhHhc--CCCEEEEEecCCCc-ccccCEEEEEeCCEEEEecCHHHHHhcc
Q 000746 782 S---------------C--------IKEEL--RGKTRILVTNQLHF-LPHVDRIILVSEGMIKEEGSFEELSKHG 830 (1303)
Q Consensus 782 ~---------------~--------i~~~~--~~~TvilvtH~~~~-l~~aD~ii~l~~G~i~~~g~~~~l~~~~ 830 (1303)
+ . +++.. -+.|+|.|||+... ...+|+|++|++|+|.+.|++.|+.+++
T Consensus 151 ~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P 225 (338)
T COG3839 151 KPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERP 225 (338)
T ss_pred CCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCc
Confidence 2 1 11111 36899999999866 5679999999999999999999998654
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=276.02 Aligned_cols=166 Identities=28% Similarity=0.413 Sum_probs=134.4
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc--------CeEEEEccC
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR--------GTVAYVPQI 711 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~--------~~iayv~Q~ 711 (1303)
.+++++++..|+. ..+|+|+||+|++||+++|+|||||||||||++|.|+.+|++|. +.+. ..++||+|+
T Consensus 3 ~l~i~~v~~~f~~-~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~-V~~~g~~v~~p~~~~~~vFQ~ 80 (248)
T COG1116 3 LLEIEGVSKSFGG-VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGE-VLLDGRPVTGPGPDIGYVFQE 80 (248)
T ss_pred eEEEEeeEEEeCc-eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCcccCCCCCCEEEEecc
Confidence 5789999999986 57999999999999999999999999999999999999999974 4443 369999999
Q ss_pred ccccc-ccHHHHHccCCCCC-------hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH--
Q 000746 712 SWIFN-ATLRKNILFGSEFD-------PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN-- 781 (1303)
Q Consensus 712 p~l~~-~TireNI~~g~~~~-------~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~-- 781 (1303)
+-||. -||+||+.++-+.. +++..+.++.++|...-+..| ..||||||||+|||||+..
T Consensus 81 ~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P-----------~qLSGGMrQRVaiARAL~~~P 149 (248)
T COG1116 81 DALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP-----------HQLSGGMRQRVAIARALATRP 149 (248)
T ss_pred CcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc-----------cccChHHHHHHHHHHHHhcCC
Confidence 99885 79999999986531 235666777777766555554 5799999999999999531
Q ss_pred ---------------------HHHhHhc--CCCEEEEEecCCCc-ccccCEEEEEeC--CEEE
Q 000746 782 ---------------------SCIKEEL--RGKTRILVTNQLHF-LPHVDRIILVSE--GMIK 818 (1303)
Q Consensus 782 ---------------------~~i~~~~--~~~TvilvtH~~~~-l~~aD~ii~l~~--G~i~ 818 (1303)
+.+.+.. .++|+++|||+++. +..+|||++|.+ |+|.
T Consensus 150 ~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 150 KLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred CEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 1222222 47999999999987 567999999998 4453
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-30 Score=285.23 Aligned_cols=189 Identities=32% Similarity=0.552 Sum_probs=163.9
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE-------------cCeEE
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI-------------RGTVA 706 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~-------------~~~ia 706 (1303)
.++++|++++|++..++++|+||++++|++++|+||||||||||+++|+|+.+|.+|. +.+ +..++
T Consensus 2 ~l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~i~ 80 (229)
T cd03254 2 EIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQ-ILIDGIDIRDISRKSLRSMIG 80 (229)
T ss_pred eEEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCE-EEECCEeHHHcCHHHHhhhEE
Confidence 4889999999975456999999999999999999999999999999999999998874 332 34599
Q ss_pred EEccCcccccccHHHHHccCCC-CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH----
Q 000746 707 YVPQISWIFNATLRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN---- 781 (1303)
Q Consensus 707 yv~Q~p~l~~~TireNI~~g~~-~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~---- 781 (1303)
|++|+++++++|++||+.++.+ ..+++..+.++.+++.+.++.+|.|+++.++....+||||||||++||||+..
T Consensus 81 ~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~l 160 (229)
T cd03254 81 VVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKI 160 (229)
T ss_pred EecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999998754 34566777788888999999999999999999999999999999999999542
Q ss_pred -------------------HHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhc
Q 000746 782 -------------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 782 -------------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
+.+....+++|+|++||+++.++.||++++|++|++++.|+.+++..+
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 161 LILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 334444468999999999999888999999999999999998877543
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.6e-31 Score=295.38 Aligned_cols=179 Identities=30% Similarity=0.472 Sum_probs=147.8
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE-----------cCeEEE
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI-----------RGTVAY 707 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~-----------~~~iay 707 (1303)
..++++|++.+|+ +..+++|+||+|++||++++.|||||||||+|++|.|+..|++|. +.+ ++.|++
T Consensus 4 ~~l~i~~v~k~yg-~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~-I~l~G~~i~~lpp~kR~ig~ 81 (352)
T COG3842 4 PALEIRNVSKSFG-DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGE-ILLDGEDITDVPPEKRPIGM 81 (352)
T ss_pred ceEEEEeeeeecC-CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCEECCCCChhhcccce
Confidence 4689999999998 557999999999999999999999999999999999999999874 443 357999
Q ss_pred EccCcccc-cccHHHHHccCCC----CC-h---hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHH
Q 000746 708 VPQISWIF-NATLRKNILFGSE----FD-P---AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARA 778 (1303)
Q Consensus 708 v~Q~p~l~-~~TireNI~~g~~----~~-~---~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARA 778 (1303)
|+|+..|| +.||+|||.||.. .. + +++.++++..+|.+.-+. +...|||||+||+|||||
T Consensus 82 VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R-----------~p~qLSGGQqQRVALARA 150 (352)
T COG3842 82 VFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADR-----------KPHQLSGGQQQRVALARA 150 (352)
T ss_pred eecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhh-----------ChhhhChHHHHHHHHHHH
Confidence 99999999 7899999999965 12 2 366667777766654333 456799999999999999
Q ss_pred HH--------H-------HHHh--------Hhc--CCCEEEEEecCCCc-ccccCEEEEEeCCEEEEecCHHHHHhcc
Q 000746 779 VF--------N-------SCIK--------EEL--RGKTRILVTNQLHF-LPHVDRIILVSEGMIKEEGSFEELSKHG 830 (1303)
Q Consensus 779 l~--------~-------~~i~--------~~~--~~~TvilvtH~~~~-l~~aD~ii~l~~G~i~~~g~~~~l~~~~ 830 (1303)
|. | .-++ +.. .|.|.|+|||+-+. +..+|||++|++|+|.+.|+++|+...+
T Consensus 151 L~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P 228 (352)
T COG3842 151 LVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228 (352)
T ss_pred hhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence 52 2 1111 111 38999999999876 7889999999999999999999998764
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-29 Score=309.21 Aligned_cols=184 Identities=23% Similarity=0.298 Sum_probs=133.3
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE-cCeEEEEccCccccc-
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI-RGTVAYVPQISWIFN- 716 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~-~~~iayv~Q~p~l~~- 716 (1303)
+.++++|++++|+++.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+... +..|+||+|+|.+++
T Consensus 5 ~~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~ 84 (556)
T PRK11819 5 YIYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDPE 84 (556)
T ss_pred EEEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCC
Confidence 358999999999733579999999999999999999999999999999999999998754322 357999999999885
Q ss_pred ccHHHHHccCCC-C----------------Chhh-------HH---HHHHH-------HhhHHHhhcCCCCCCccccCCC
Q 000746 717 ATLRKNILFGSE-F----------------DPAK-------YW---KTVDV-------SALQHDLDLLPDRDLTEIGERG 762 (1303)
Q Consensus 717 ~TireNI~~g~~-~----------------~~~~-------~~---~vl~~-------~~l~~~i~~lp~g~~T~ige~G 762 (1303)
.|++||+.++.. + .++. +. +.++. ..+.+.++.+ |.. ......
T Consensus 85 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~-~~~~~~ 161 (556)
T PRK11819 85 KTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL--RCP-PWDAKV 161 (556)
T ss_pred CcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC--CCC-cccCch
Confidence 499999987521 0 0000 00 00100 0111122222 111 123445
Q ss_pred CCCchHHHHHHHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCccc-ccCEEEEEeCCEEE
Q 000746 763 VNISGGQKQRVSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFLP-HVDRIILVSEGMIK 818 (1303)
Q Consensus 763 ~~LSGGQkQRiaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~ 818 (1303)
.+||||||||++||||++. +.+.+. +.|+|+|||+++.+. .||+|++|++|+++
T Consensus 162 ~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~--~~tviiisHd~~~~~~~~d~i~~l~~g~i~ 239 (556)
T PRK11819 162 TKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY--PGTVVAVTHDRYFLDNVAGWILELDRGRGI 239 (556)
T ss_pred hhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcCeEEEEeCCEEE
Confidence 6899999999999999642 223322 369999999999876 58999999999986
Q ss_pred -EecCHHHHH
Q 000746 819 -EEGSFEELS 827 (1303)
Q Consensus 819 -~~g~~~~l~ 827 (1303)
..|+++++.
T Consensus 240 ~~~g~~~~~~ 249 (556)
T PRK11819 240 PWEGNYSSWL 249 (556)
T ss_pred EecCCHHHHH
Confidence 678777654
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-30 Score=284.45 Aligned_cols=194 Identities=30% Similarity=0.583 Sum_probs=165.8
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc-------------CeEEE
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR-------------GTVAY 707 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~-------------~~iay 707 (1303)
++++|++++|+++.++++|+||+|++|++++|+||||||||||+++|.|+.+|.+|. +.++ ..++|
T Consensus 1 l~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~-v~~~g~~~~~~~~~~~~~~i~~ 79 (236)
T cd03253 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGS-ILIDGQDIREVTLDSLRRAIGV 79 (236)
T ss_pred CEEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCE-EEECCEEhhhCCHHHHHhhEEE
Confidence 468999999965457999999999999999999999999999999999999999874 3332 35999
Q ss_pred EccCcccccccHHHHHccCCC-CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-----
Q 000746 708 VPQISWIFNATLRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN----- 781 (1303)
Q Consensus 708 v~Q~p~l~~~TireNI~~g~~-~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~----- 781 (1303)
++|+++++++|++||+.++.. .+++...+.++.+++.+.++.+|.|+++.+..+..+||||||||++||||+..
T Consensus 80 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ll 159 (236)
T cd03253 80 VPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPIL 159 (236)
T ss_pred ECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999998753 34555667778888888889999999999999999999999999999999642
Q ss_pred ------------------HHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhcchHHHH
Q 000746 782 ------------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQK 835 (1303)
Q Consensus 782 ------------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~~~~~~ 835 (1303)
+.+....+++|+|++||+++.+..||++++|++|++++.|+.+++......++.
T Consensus 160 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~~~~~~~ 231 (236)
T cd03253 160 LLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAE 231 (236)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhcccHHHH
Confidence 334444458899999999999988999999999999999999888766555544
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=9e-30 Score=315.66 Aligned_cols=169 Identities=27% Similarity=0.445 Sum_probs=127.3
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCC--CCCCCceEEE-----------------
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGEL--PPLKDASVVI----------------- 701 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~--~~~~g~~~~~----------------- 701 (1303)
++++|++++|++ .++|+|+||++++|++++|+||||||||||+++|+|+. +|++|.+..-
T Consensus 1 l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g 79 (520)
T TIGR03269 1 IEVKNLTKKFDG-KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVG 79 (520)
T ss_pred CEEEEEEEEECC-eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccc
Confidence 468999999964 47999999999999999999999999999999999996 6887743221
Q ss_pred ----------------------------cCeEEEEccC-ccccc-ccHHHHHccCCC---CCh----hhHHHHHHHHhhH
Q 000746 702 ----------------------------RGTVAYVPQI-SWIFN-ATLRKNILFGSE---FDP----AKYWKTVDVSALQ 744 (1303)
Q Consensus 702 ----------------------------~~~iayv~Q~-p~l~~-~TireNI~~g~~---~~~----~~~~~vl~~~~l~ 744 (1303)
+..++|++|+ +.++. .|++||+.++.. ++. ++..++++.+++.
T Consensus 80 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 159 (520)
T TIGR03269 80 EPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLS 159 (520)
T ss_pred cccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh
Confidence 2358999997 56665 699999987521 222 2233344444443
Q ss_pred HHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-----------------------HHHhHhc--CCCEEEEEecC
Q 000746 745 HDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN-----------------------SCIKEEL--RGKTRILVTNQ 799 (1303)
Q Consensus 745 ~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~-----------------------~~i~~~~--~~~TvilvtH~ 799 (1303)
+. ......+||||||||++||||+.. +.+++.. .++|+|+|||+
T Consensus 160 ~~-----------~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd 228 (520)
T TIGR03269 160 HR-----------ITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHW 228 (520)
T ss_pred hh-----------hhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Confidence 22 233456799999999999999542 2344443 37899999999
Q ss_pred CCccc-ccCEEEEEeCCEEEEec
Q 000746 800 LHFLP-HVDRIILVSEGMIKEEG 821 (1303)
Q Consensus 800 ~~~l~-~aD~ii~l~~G~i~~~g 821 (1303)
++.+. .||+|++|++|+++..|
T Consensus 229 ~~~~~~~~d~i~~l~~G~i~~~g 251 (520)
T TIGR03269 229 PEVIEDLSDKAIWLENGEIKEEG 251 (520)
T ss_pred HHHHHHhcCEEEEEeCCEEeeec
Confidence 99975 59999999999986543
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-29 Score=311.85 Aligned_cols=183 Identities=21% Similarity=0.313 Sum_probs=132.5
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc--CeEEEEccCccccc-c
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR--GTVAYVPQISWIFN-A 717 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~--~~iayv~Q~p~l~~-~ 717 (1303)
++++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|.|+++|++|. +.+. ..|+|++|++.++. .
T Consensus 2 l~i~~ls~~~~~-~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~-i~~~~~~~i~~~~q~~~~~~~~ 79 (530)
T PRK15064 2 LSTANITMQFGA-KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGN-VSLDPNERLGKLRQDQFAFEEF 79 (530)
T ss_pred EEEEEEEEEeCC-cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEecCCCEEEEEeccCCcCCCC
Confidence 689999999974 47999999999999999999999999999999999999999875 4443 57999999998774 5
Q ss_pred cHHHHHccCCC-C-------------C---hh---hHHHHHH----------HHhhHHHhhcCCCCCCccc-cCCCCCCc
Q 000746 718 TLRKNILFGSE-F-------------D---PA---KYWKTVD----------VSALQHDLDLLPDRDLTEI-GERGVNIS 766 (1303)
Q Consensus 718 TireNI~~g~~-~-------------~---~~---~~~~vl~----------~~~l~~~i~~lp~g~~T~i-ge~G~~LS 766 (1303)
|++||+.++.. . . .+ .+.+..+ .....+.++.+ |..... .....+||
T Consensus 80 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~~LS 157 (530)
T PRK15064 80 TVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGV--GIPEEQHYGLMSEVA 157 (530)
T ss_pred cHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhC--CCChhHhcCchhhcC
Confidence 99999987531 0 0 00 0000000 00112223332 221111 23456899
Q ss_pred hHHHHHHHHHHHHHHH-------------------HHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEE-EecCH
Q 000746 767 GGQKQRVSMARAVFNS-------------------CIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIK-EEGSF 823 (1303)
Q Consensus 767 GGQkQRiaLARAl~~~-------------------~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~-~~g~~ 823 (1303)
||||||++||||++.+ .+.+.+ .++|+|+|||+++.+. .||+|++|++|+++ ..|++
T Consensus 158 gGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~~~g~~ 237 (530)
T PRK15064 158 PGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDYGELRVYPGNY 237 (530)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEeCCEEEEecCCH
Confidence 9999999999996421 122222 4789999999999875 59999999999994 78888
Q ss_pred HHHH
Q 000746 824 EELS 827 (1303)
Q Consensus 824 ~~l~ 827 (1303)
++..
T Consensus 238 ~~~~ 241 (530)
T PRK15064 238 DEYM 241 (530)
T ss_pred HHHH
Confidence 8765
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-30 Score=280.50 Aligned_cols=177 Identities=29% Similarity=0.524 Sum_probs=144.6
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcC-------------eEE
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRG-------------TVA 706 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~-------------~ia 706 (1303)
.++++|++|+|+ ++++++|+||++++||+++|+|||||||||||++|.|.++|.+| .+.+.+ .+|
T Consensus 2 ~L~~~~ls~~y~-~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G-~V~l~g~~i~~~~~kelAk~ia 79 (258)
T COG1120 2 MLEVENLSFGYG-GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSG-EVLLDGKDIASLSPKELAKKLA 79 (258)
T ss_pred eeEEEEEEEEEC-CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCC-EEEECCCchhhcCHHHHhhhEE
Confidence 478999999998 45899999999999999999999999999999999999999887 454443 799
Q ss_pred EEccCccc-ccccHHHHHccCC-CC----------ChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHH
Q 000746 707 YVPQISWI-FNATLRKNILFGS-EF----------DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVS 774 (1303)
Q Consensus 707 yv~Q~p~l-~~~TireNI~~g~-~~----------~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRia 774 (1303)
|+||++.. +.-||+|-+.+|+ |+ |++...++++.+++.+..++ .-..||||||||+.
T Consensus 80 ~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r-----------~~~~LSGGerQrv~ 148 (258)
T COG1120 80 YVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADR-----------PVDELSGGERQRVL 148 (258)
T ss_pred EeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcC-----------cccccChhHHHHHH
Confidence 99999754 5779999999996 32 23345666777777654322 12469999999999
Q ss_pred HHHHHHHH-----------------------HHhHhc--CCCEEEEEecCCCc-ccccCEEEEEeCCEEEEecCHHHHHh
Q 000746 775 MARAVFNS-----------------------CIKEEL--RGKTRILVTNQLHF-LPHVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 775 LARAl~~~-----------------------~i~~~~--~~~TvilvtH~~~~-l~~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
||||+.++ .+++.. +|+|+|+|+|+++. .++||++++|++|+++.+|+++|.+.
T Consensus 149 iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT 228 (258)
T COG1120 149 IARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLT 228 (258)
T ss_pred HHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcC
Confidence 99996542 223322 58999999999987 68899999999999999999998875
Q ss_pred c
Q 000746 829 H 829 (1303)
Q Consensus 829 ~ 829 (1303)
.
T Consensus 229 ~ 229 (258)
T COG1120 229 E 229 (258)
T ss_pred H
Confidence 3
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-30 Score=285.20 Aligned_cols=193 Identities=32% Similarity=0.554 Sum_probs=165.4
Q ss_pred EEEEeeEEEeCCC-CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE-------------cCeEE
Q 000746 641 VSIKNGNFSWDSK-SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI-------------RGTVA 706 (1303)
Q Consensus 641 i~~~~~~f~~~~~-~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~-------------~~~ia 706 (1303)
++++|++++|++. .++++|+||++++|++++|+||||||||||+++|.|+++|++|.+ .+ ++.++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI-LIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEE-EECCEEhhhCCHHHHHhhEE
Confidence 4689999999754 369999999999999999999999999999999999999998743 32 23599
Q ss_pred EEccCcccccccHHHHHccCCC-CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHH-----
Q 000746 707 YVPQISWIFNATLRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF----- 780 (1303)
Q Consensus 707 yv~Q~p~l~~~TireNI~~g~~-~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~----- 780 (1303)
|++|++++++.|++||+.++.. .+++++.+.++.+++.+.++.+|.|.++..+....+||||||||++||||+.
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999998754 4555666777778888899999999999999999999999999999999954
Q ss_pred ------------------HHHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhcchHHH
Q 000746 781 ------------------NSCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQ 834 (1303)
Q Consensus 781 ------------------~~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~~~~~ 834 (1303)
.+.+.+..+++|+|++||+++.+..||++++|++|++++.|+++++....+.++
T Consensus 160 llLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~ 231 (234)
T cd03251 160 LILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYA 231 (234)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcCcchh
Confidence 234455556899999999999988899999999999999999998876654443
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-30 Score=282.16 Aligned_cols=183 Identities=28% Similarity=0.474 Sum_probs=160.8
Q ss_pred cEEEEeeEEEeCCC-CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------EcCeEE
Q 000746 640 AVSIKNGNFSWDSK-SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------IRGTVA 706 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~-~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------~~~~ia 706 (1303)
.++++|++++|+.. .++++|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .++.++
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (221)
T cd03244 2 DIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRIS 81 (221)
T ss_pred cEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEE
Confidence 47899999999753 47999999999999999999999999999999999999999875321 134699
Q ss_pred EEccCcccccccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-----
Q 000746 707 YVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN----- 781 (1303)
Q Consensus 707 yv~Q~p~l~~~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~----- 781 (1303)
|++|+|.++++|++|||.+....++++..++++..++.+.+..+|.|+++..++.+.+||||||||++||||++.
T Consensus 82 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~ll 161 (221)
T cd03244 82 IIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKIL 161 (221)
T ss_pred EECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999999776667777888888899999999999999999999999999999999999999642
Q ss_pred ------------------HHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecC
Q 000746 782 ------------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGS 822 (1303)
Q Consensus 782 ------------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~ 822 (1303)
+.+.+..+++|+|++||+++.+..||++++|++|++++.|+
T Consensus 162 llDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 162 VLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 33444445789999999999998999999999999998875
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.3e-28 Score=321.52 Aligned_cols=180 Identities=26% Similarity=0.392 Sum_probs=142.1
Q ss_pred CcEEEEeeEEEeC-CCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-----------EcCeEE
Q 000746 639 PAVSIKNGNFSWD-SKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-----------IRGTVA 706 (1303)
Q Consensus 639 ~~i~~~~~~f~~~-~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-----------~~~~ia 706 (1303)
..++++|+++.|+ ++.++++|+||++++||+++|+||||||||||+++|.|+++|++|.... .++.++
T Consensus 927 ~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG 1006 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLG 1006 (2272)
T ss_pred ceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEE
Confidence 3689999999996 3457999999999999999999999999999999999999999875321 134699
Q ss_pred EEccCccccc-ccHHHHHccCCC---CCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHH
Q 000746 707 YVPQISWIFN-ATLRKNILFGSE---FDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARA 778 (1303)
Q Consensus 707 yv~Q~p~l~~-~TireNI~~g~~---~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARA 778 (1303)
||||++.+++ .|++|||.++.. .+. ++..+.++..+|. ........+||||||||++||||
T Consensus 1007 ~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~-----------~~~~~~~~~LSGGqKQRLsLArA 1075 (2272)
T TIGR01257 1007 MCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLH-----------HKRNEEAQDLSGGMQRKLSVAIA 1075 (2272)
T ss_pred EEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-----------hhhcCChhhCCHHHHHHHHHHHH
Confidence 9999998885 599999987531 222 2233334333332 22344567899999999999999
Q ss_pred HHH-----------------------HHHhHhcCCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHhc
Q 000746 779 VFN-----------------------SCIKEELRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 779 l~~-----------------------~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
+.. +.+++..+|+|+|++||+++.+. .||+|++|++|+++..|+.++|.++
T Consensus 1076 Li~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257 1076 FVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred HHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHh
Confidence 542 23444446899999999999875 5999999999999999999998653
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-30 Score=266.00 Aligned_cols=188 Identities=30% Similarity=0.512 Sum_probs=152.2
Q ss_pred CCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE---------------Ec
Q 000746 638 LPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV---------------IR 702 (1303)
Q Consensus 638 ~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~---------------~~ 702 (1303)
.+.|++++++++|.+ ..+++|+||+|++||.++|+||||||||||+++|.|+++|++|.+.. ++
T Consensus 6 ~~~I~vr~v~~~fG~-~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 6 EPLIEVRGVTKSFGD-RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred cceEEEeeeeeecCC-EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 457999999999975 47999999999999999999999999999999999999999985432 35
Q ss_pred CeEEEEccCccccc-ccHHHHHccCC----CCChhhHHH----HHHHHhhHHH-hhcCCCCCCccccCCCCCCchHHHHH
Q 000746 703 GTVAYVPQISWIFN-ATLRKNILFGS----EFDPAKYWK----TVDVSALQHD-LDLLPDRDLTEIGERGVNISGGQKQR 772 (1303)
Q Consensus 703 ~~iayv~Q~p~l~~-~TireNI~~g~----~~~~~~~~~----vl~~~~l~~~-i~~lp~g~~T~ige~G~~LSGGQkQR 772 (1303)
+++|+++|+-.||+ -||+||+.|.- ..+++.+++ -+++++|..+ .+.+| ..||||++.|
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sELSGGM~KR 153 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SELSGGMRKR 153 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hhhcchHHHH
Confidence 67999999999995 59999999852 345544443 4566777666 44444 5699999999
Q ss_pred HHHHHHH-----------------------HHHHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHH
Q 000746 773 VSMARAV-----------------------FNSCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEEL 826 (1303)
Q Consensus 773 iaLARAl-----------------------~~~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l 826 (1303)
+|||||+ +++.|++.. -+.|+++|||+++.+. .||+++++.||+|..+|+++|+
T Consensus 154 vaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el 233 (263)
T COG1127 154 VALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEEL 233 (263)
T ss_pred HHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHH
Confidence 9999994 344554433 3889999999999864 5899999999999999999999
Q ss_pred Hhcch-HHHHHH
Q 000746 827 SKHGR-LFQKLM 837 (1303)
Q Consensus 827 ~~~~~-~~~~l~ 837 (1303)
.+.+. ..++++
T Consensus 234 ~~sd~P~v~qf~ 245 (263)
T COG1127 234 LASDDPWVRQFF 245 (263)
T ss_pred HhCCCHHHHHHh
Confidence 87654 344443
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-29 Score=316.77 Aligned_cols=180 Identities=22% Similarity=0.293 Sum_probs=135.0
Q ss_pred CcEEEEeeEEEeCC---CCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE---------------
Q 000746 639 PAVSIKNGNFSWDS---KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV--------------- 700 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~---~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~--------------- 700 (1303)
+.++++|++++|+. ..++++||||++++||+++|+|+||||||||+++|+|+++|.+|.+..
T Consensus 11 ~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~ 90 (623)
T PRK10261 11 DVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIEL 90 (623)
T ss_pred ceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccccc
Confidence 46899999999963 236999999999999999999999999999999999999998874321
Q ss_pred ----------E-cCeEEEEccCc--cccc-ccHHHHHccCC----CCChh----hHHHHHHHHhhHHHhhcCCCCCCccc
Q 000746 701 ----------I-RGTVAYVPQIS--WIFN-ATLRKNILFGS----EFDPA----KYWKTVDVSALQHDLDLLPDRDLTEI 758 (1303)
Q Consensus 701 ----------~-~~~iayv~Q~p--~l~~-~TireNI~~g~----~~~~~----~~~~vl~~~~l~~~i~~lp~g~~T~i 758 (1303)
. +..|+||+|+| .++. .||+|||.++. ..+.. +..++++..++ ++. ....
T Consensus 91 ~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL-------~~~-~~~~ 162 (623)
T PRK10261 91 SEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRI-------PEA-QTIL 162 (623)
T ss_pred ccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCC-------CCh-hhHH
Confidence 0 13699999998 4654 69999998752 12221 22223333222 110 1223
Q ss_pred cCCCCCCchHHHHHHHHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCcc-cccCEEEEE
Q 000746 759 GERGVNISGGQKQRVSMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFL-PHVDRIILV 812 (1303)
Q Consensus 759 ge~G~~LSGGQkQRiaLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l-~~aD~ii~l 812 (1303)
.....+|||||||||+||||++. +.+++.. .++|+|+|||+++.+ ..||+|++|
T Consensus 163 ~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl 242 (623)
T PRK10261 163 SRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVM 242 (623)
T ss_pred hCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEe
Confidence 45567899999999999999542 2344432 378999999999986 469999999
Q ss_pred eCCEEEEecCHHHH
Q 000746 813 SEGMIKEEGSFEEL 826 (1303)
Q Consensus 813 ~~G~i~~~g~~~~l 826 (1303)
++|++++.|+++++
T Consensus 243 ~~G~i~~~g~~~~~ 256 (623)
T PRK10261 243 YQGEAVETGSVEQI 256 (623)
T ss_pred eCCeecccCCHHHh
Confidence 99999998887765
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-30 Score=254.85 Aligned_cols=174 Identities=28% Similarity=0.445 Sum_probs=145.2
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc-----------CeEEEEc
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR-----------GTVAYVP 709 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~-----------~~iayv~ 709 (1303)
+.++++.|+|.... -..+++|++||+++|+||||||||||+++|.|+..|.+|. ++++ +.++.++
T Consensus 2 l~L~~V~~~y~~~~---~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~-i~i~g~d~t~~~P~~RPVSmlF 77 (231)
T COG3840 2 LALDDVRFSYGHLP---MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGE-ILINGVDHTASPPAERPVSMLF 77 (231)
T ss_pred ccccceEEeeCcce---EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCce-EEEcCeecCcCCcccCChhhhh
Confidence 56788999997543 2578999999999999999999999999999999999975 4433 4599999
Q ss_pred cCcccc-cccHHHHHccCCC-------CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH
Q 000746 710 QISWIF-NATLRKNILFGSE-------FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN 781 (1303)
Q Consensus 710 Q~p~l~-~~TireNI~~g~~-------~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~ 781 (1303)
|+..|| .-||.+||-+|.. .+.++++.++...+|....+.+|. .||||||||+||||++++
T Consensus 78 QEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARclvR 146 (231)
T COG3840 78 QENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARCLVR 146 (231)
T ss_pred hccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHHHhc
Confidence 999999 5799999999853 245678888888999999998883 599999999999999653
Q ss_pred H---------------HHh--------Hh--cCCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHHhc
Q 000746 782 S---------------CIK--------EE--LRGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 782 ~---------------~i~--------~~--~~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
+ .++ +. -++.|+++|||+++.+ +.+|+++++++|+|.++|+.+++...
T Consensus 147 ~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~ 220 (231)
T COG3840 147 EQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG 220 (231)
T ss_pred cCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhcc
Confidence 2 111 11 1689999999999986 46999999999999999999988754
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=312.75 Aligned_cols=173 Identities=23% Similarity=0.341 Sum_probs=129.2
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCC--CCCceEEE--------------cC
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP--LKDASVVI--------------RG 703 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~--~~g~~~~~--------------~~ 703 (1303)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|.|+++| ++|.+ .+ +.
T Consensus 5 ~l~~~nl~~~~~~-~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i-~~~g~~~~~~~~~~~~~~ 82 (506)
T PRK13549 5 LLEMKNITKTFGG-VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEI-IFEGEELQASNIRDTERA 82 (506)
T ss_pred eEEEeeeEEEeCC-eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEE-EECCEECCCCCHHHHHHC
Confidence 5899999999964 4799999999999999999999999999999999999986 67643 32 24
Q ss_pred eEEEEccCccccc-ccHHHHHccCCCC------ChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHH
Q 000746 704 TVAYVPQISWIFN-ATLRKNILFGSEF------DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMA 776 (1303)
Q Consensus 704 ~iayv~Q~p~l~~-~TireNI~~g~~~------~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLA 776 (1303)
.++|++|++.++. .|++||+.++... +.++..+.+ .+.++.+ |..........+||||||||++||
T Consensus 83 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~la 155 (506)
T PRK13549 83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRA-----QKLLAQL--KLDINPATPVGNLGLGQQQLVEIA 155 (506)
T ss_pred CeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHH-----HHHHHHc--CCCCCcccchhhCCHHHHHHHHHH
Confidence 5999999998875 5999999986431 222221111 1122222 111122344568999999999999
Q ss_pred HHHHH-----------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEec
Q 000746 777 RAVFN-----------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEG 821 (1303)
Q Consensus 777 RAl~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g 821 (1303)
||+.. +.+.+.. +++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 156 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~ 225 (506)
T PRK13549 156 KALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTR 225 (506)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeec
Confidence 99542 2333332 4789999999999875 59999999999987644
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-30 Score=275.64 Aligned_cols=179 Identities=30% Similarity=0.437 Sum_probs=143.7
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-------------EcCeEE
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-------------IRGTVA 706 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-------------~~~~ia 706 (1303)
.|+++|++..|+. .++++|||++|+.||.+++.|||||||||||++|.|+..|+.|.+.. -.++||
T Consensus 2 ~i~i~~~~~~~~~-~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VG 80 (345)
T COG1118 2 SIRINNVKKRFGA-FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVG 80 (345)
T ss_pred ceeehhhhhhccc-ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhccee
Confidence 3778889888874 46899999999999999999999999999999999999999974431 124699
Q ss_pred EEccCcccc-cccHHHHHccCCCC---------ChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHH
Q 000746 707 YVPQISWIF-NATLRKNILFGSEF---------DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMA 776 (1303)
Q Consensus 707 yv~Q~p~l~-~~TireNI~~g~~~---------~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLA 776 (1303)
||.|+.-+| +.||.|||.||.+. ...+..+.++.|+|+..-+.- ..+||||||||||||
T Consensus 81 fvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ry-----------P~QLSGGQrQRVALA 149 (345)
T COG1118 81 FVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRY-----------PAQLSGGQRQRVALA 149 (345)
T ss_pred EEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcC-----------chhcChHHHHHHHHH
Confidence 999999998 78999999999732 133455566677665433332 467999999999999
Q ss_pred HHH--------H-------H----HHHhHhc------CCCEEEEEecCCCc-ccccCEEEEEeCCEEEEecCHHHHHhcc
Q 000746 777 RAV--------F-------N----SCIKEEL------RGKTRILVTNQLHF-LPHVDRIILVSEGMIKEEGSFEELSKHG 830 (1303)
Q Consensus 777 RAl--------~-------~----~~i~~~~------~~~TvilvtH~~~~-l~~aD~ii~l~~G~i~~~g~~~~l~~~~ 830 (1303)
||+ + | +.++.++ -+.|+++|||+.+. ++.||+|++|++|+|...|+++|....+
T Consensus 150 RALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~~P 229 (345)
T COG1118 150 RALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHP 229 (345)
T ss_pred HHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhcCC
Confidence 994 1 1 2233332 27899999999987 6789999999999999999999997654
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=271.71 Aligned_cols=178 Identities=32% Similarity=0.501 Sum_probs=144.2
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE---------cCeEEEEc
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI---------RGTVAYVP 709 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~---------~~~iayv~ 709 (1303)
..|+++|++++|+++ ++|+||||++++|++++|+||||||||||+|+|+|+++|.+|.+... +.+|||||
T Consensus 3 ~~i~v~nl~v~y~~~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVP 81 (254)
T COG1121 3 PMIEVENLTVSYGNR-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVP 81 (254)
T ss_pred cEEEEeeeEEEECCE-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcC
Confidence 368999999999866 69999999999999999999999999999999999999999855432 14799999
Q ss_pred cCc---ccccccHHHHHccCCCC-----------ChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHH
Q 000746 710 QIS---WIFNATLRKNILFGSEF-----------DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSM 775 (1303)
Q Consensus 710 Q~p---~l~~~TireNI~~g~~~-----------~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaL 775 (1303)
|.. |=|..||+|-+.+|... |.++..++++..++.+.. +..| ..|||||+||+-|
T Consensus 82 Q~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~-------~r~i----~~LSGGQ~QRV~l 150 (254)
T COG1121 82 QKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLR-------DRQI----GELSGGQKQRVLL 150 (254)
T ss_pred cccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhh-------CCcc----cccCcHHHHHHHH
Confidence 954 77899999999998421 346778888888876432 1233 3599999999999
Q ss_pred HHHHHH-----------------------HHHhHhc-CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHHhc
Q 000746 776 ARAVFN-----------------------SCIKEEL-RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 776 ARAl~~-----------------------~~i~~~~-~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
||||.. +.+.+.. +|+||++|||+++.+ .++|+|+.|+ +++...|++++....
T Consensus 151 ARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~~~~ 228 (254)
T COG1121 151 ARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEVLTE 228 (254)
T ss_pred HHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhccCH
Confidence 999642 2233332 489999999999986 5699999995 577889999988754
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-29 Score=310.49 Aligned_cols=174 Identities=20% Similarity=0.257 Sum_probs=128.8
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc--------------CeE
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR--------------GTV 705 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~--------------~~i 705 (1303)
.++++|++++|++ .++++|+||+|++||+++|+||||||||||+++|.|+++|++|.+ .+. ..+
T Consensus 5 ~l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i-~~~g~~i~~~~~~~~~~~~i 82 (510)
T PRK09700 5 YISMAGIGKSFGP-VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTI-TINNINYNKLDHKLAAQLGI 82 (510)
T ss_pred eEEEeeeEEEcCC-eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEE-EECCEECCCCCHHHHHHCCe
Confidence 5899999999964 469999999999999999999999999999999999999988754 322 359
Q ss_pred EEEccCccccc-ccHHHHHccCCC-C---------ChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHH
Q 000746 706 AYVPQISWIFN-ATLRKNILFGSE-F---------DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVS 774 (1303)
Q Consensus 706 ayv~Q~p~l~~-~TireNI~~g~~-~---------~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRia 774 (1303)
+|++|++.++. .|++||+.++.. . +.++..+. ..+.++.+ |..........+||||||||++
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LSgG~~qrv~ 155 (510)
T PRK09700 83 GIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVR-----AAMMLLRV--GLKVDLDEKVANLSISHKQMLE 155 (510)
T ss_pred EEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHH-----HHHHHHHc--CCCCCcccchhhCCHHHHHHHH
Confidence 99999998875 599999987531 0 11111111 11112221 1111123345689999999999
Q ss_pred HHHHHHH-----------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecC
Q 000746 775 MARAVFN-----------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGS 822 (1303)
Q Consensus 775 LARAl~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~ 822 (1303)
||||+.. +.+.+.. +++|+|+|||+++.+. .||++++|++|+++..|+
T Consensus 156 ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~ 228 (510)
T PRK09700 156 IAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGM 228 (510)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecc
Confidence 9999542 2333322 4799999999999875 699999999999876543
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-29 Score=279.87 Aligned_cols=193 Identities=29% Similarity=0.535 Sum_probs=163.2
Q ss_pred EEEEeeEEEeCCC--CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc-------------CeE
Q 000746 641 VSIKNGNFSWDSK--SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR-------------GTV 705 (1303)
Q Consensus 641 i~~~~~~f~~~~~--~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~-------------~~i 705 (1303)
++++|+++.|++. .++++|+||++++||+++|+|+||||||||+++|+|+++|.+|. +.+. ..+
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~i 79 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGE-ILLDGVDIRDLNLRWLRSQI 79 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCE-EEECCEehhhcCHHHHHhhE
Confidence 4689999999742 36999999999999999999999999999999999999999874 3322 359
Q ss_pred EEEccCcccccccHHHHHccCCC-CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH---
Q 000746 706 AYVPQISWIFNATLRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN--- 781 (1303)
Q Consensus 706 ayv~Q~p~l~~~TireNI~~g~~-~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~--- 781 (1303)
+|++|++.+++.|++||+.++.. ..+++..+.++.+++.+.++.+|.|.++..+....+||||||||++||||+..
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 159 (238)
T cd03249 80 GLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPK 159 (238)
T ss_pred EEECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998754 34455666777778888889999999999988899999999999999999542
Q ss_pred --------------------HHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhcchHHH
Q 000746 782 --------------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQ 834 (1303)
Q Consensus 782 --------------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~~~~~ 834 (1303)
+.+.+..+++|+|++||+++.+..||++++|++|++++.|+.+++......+.
T Consensus 160 llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~ 232 (238)
T cd03249 160 ILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYA 232 (238)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhcChhHH
Confidence 33444446899999999999988999999999999999999888876544433
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.8e-29 Score=304.42 Aligned_cols=171 Identities=23% Similarity=0.288 Sum_probs=130.2
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE------------cCeEEE
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI------------RGTVAY 707 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~------------~~~iay 707 (1303)
.++++|++++|++ .++|+|+||++++|++++|+||||||||||+++|.|+++|++|.+..- +..++|
T Consensus 3 ~l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~ 81 (490)
T PRK10938 3 SLQISQGTFRLSD-TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSD 81 (490)
T ss_pred eEEEEeEEEEcCC-eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhce
Confidence 3789999999975 359999999999999999999999999999999999999998854320 124899
Q ss_pred EccCccc---------ccccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHH
Q 000746 708 VPQISWI---------FNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARA 778 (1303)
Q Consensus 708 v~Q~p~l---------~~~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARA 778 (1303)
++|++.+ +..|++||+.++.+ ++++..++++..++.+. ......+||||||||++||||
T Consensus 82 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~la~a 149 (490)
T PRK10938 82 EWQRNNTDMLSPGEDDTGRTTAEIIQDEVK-DPARCEQLAQQFGITAL-----------LDRRFKYLSTGETRKTLLCQA 149 (490)
T ss_pred eccCcchhhcccchhhccccHHHhcccchh-HHHHHHHHHHHcCCHhh-----------hhCCcccCCHHHHHHHHHHHH
Confidence 9998753 24589999876521 23445555555554332 223446799999999999999
Q ss_pred HHH-----------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCH
Q 000746 779 VFN-----------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSF 823 (1303)
Q Consensus 779 l~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~ 823 (1303)
++. +.+.+.. +++|+|++||+++.+. .||+|++|++|+++..|++
T Consensus 150 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~ 219 (490)
T PRK10938 150 LMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGER 219 (490)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 642 2333322 4789999999999875 5999999999999876543
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.8e-29 Score=308.85 Aligned_cols=177 Identities=20% Similarity=0.313 Sum_probs=129.5
Q ss_pred cEEEEeeEEEeCC---CCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CCCceEE----E------
Q 000746 640 AVSIKNGNFSWDS---KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP-----LKDASVV----I------ 701 (1303)
Q Consensus 640 ~i~~~~~~f~~~~---~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~-----~~g~~~~----~------ 701 (1303)
.++++|++++|++ ..++|+|+||++++||+++|+||||||||||+++|+|+++| ++|.+.. +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 5899999999963 23699999999999999999999999999999999999986 5664321 0
Q ss_pred ------cCeEEEEccCcc--cc-cccHHHHHccCC----CCCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCC
Q 000746 702 ------RGTVAYVPQISW--IF-NATLRKNILFGS----EFDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVN 764 (1303)
Q Consensus 702 ------~~~iayv~Q~p~--l~-~~TireNI~~g~----~~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~ 764 (1303)
++.|+|++|+|. ++ ..|+++|+.++. ..+. ++..++++.+++.+. .........+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~--------~~~~~~~~~~ 156 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQA--------AKRLTDYPHQ 156 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------HHHHhhCCcc
Confidence 136999999985 33 359999986421 1222 223333433333210 0112345568
Q ss_pred CchHHHHHHHHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEE
Q 000746 765 ISGGQKQRVSMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIK 818 (1303)
Q Consensus 765 LSGGQkQRiaLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~ 818 (1303)
||||||||++||||++. +.+++.. .++|+|+|||+++.+. .||+|++|++|+++
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~ 236 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV 236 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE
Confidence 99999999999999642 2333332 3799999999999875 59999999999998
Q ss_pred EecCHH
Q 000746 819 EEGSFE 824 (1303)
Q Consensus 819 ~~g~~~ 824 (1303)
+.|+++
T Consensus 237 ~~g~~~ 242 (529)
T PRK15134 237 EQNRAA 242 (529)
T ss_pred EeCCHH
Confidence 776554
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-29 Score=267.76 Aligned_cols=169 Identities=30% Similarity=0.433 Sum_probs=128.9
Q ss_pred EEEEeeEEEeCCCC---CccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----------------E
Q 000746 641 VSIKNGNFSWDSKS---PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----------------I 701 (1303)
Q Consensus 641 i~~~~~~f~~~~~~---~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----------------~ 701 (1303)
++++|++..|.... ++|+++||+|++||+++|+|||||||||||+.|.|+..|++|.+.. .
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 56899999996442 6899999999999999999999999999999999999998764321 1
Q ss_pred cCeEEEEccCcccc-cccHHHHHccCCC----CC---hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHH
Q 000746 702 RGTVAYVPQISWIF-NATLRKNILFGSE----FD---PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRV 773 (1303)
Q Consensus 702 ~~~iayv~Q~p~l~-~~TireNI~~g~~----~~---~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRi 773 (1303)
+.+||||+|+..|. +.|++|||.+... .. +++..+.++..+|.+... .....+|||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~----------~~~p~eLSGGqqQRV 151 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLL----------KKKPSELSGGQQQRV 151 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhc----------cCCchhcCHHHHHHH
Confidence 34699999999877 6699999995321 11 223333333334433222 133567999999999
Q ss_pred HHHHHHHH-----------------------HHHhHh--cCCCEEEEEecCCCcccccCEEEEEeCCEEEE
Q 000746 774 SMARAVFN-----------------------SCIKEE--LRGKTRILVTNQLHFLPHVDRIILVSEGMIKE 819 (1303)
Q Consensus 774 aLARAl~~-----------------------~~i~~~--~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~ 819 (1303)
|+|||+.. +.+.+. -.|+|+|+|||+......|||++.|+||++..
T Consensus 152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 152 AIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 99999653 123333 24789999999999999999999999999543
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.1e-29 Score=305.47 Aligned_cols=172 Identities=20% Similarity=0.284 Sum_probs=128.2
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-------------EcCeEE
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-------------IRGTVA 706 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-------------~~~~ia 706 (1303)
.++++|++++|++ .++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..|+
T Consensus 4 ~l~~~~l~~~~~~-~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~ 82 (501)
T PRK11288 4 YLSFDGIGKTFPG-VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVA 82 (501)
T ss_pred eEEEeeeEEEECC-EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEE
Confidence 5899999999974 46999999999999999999999999999999999999999875421 124699
Q ss_pred EEccCccccc-ccHHHHHccCCC------CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHH
Q 000746 707 YVPQISWIFN-ATLRKNILFGSE------FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAV 779 (1303)
Q Consensus 707 yv~Q~p~l~~-~TireNI~~g~~------~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl 779 (1303)
|++|++.++. .|++||+.++.. .+..+..+- ..+.++.+. ..........+||||||||++||||+
T Consensus 83 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~--l~~~~~~~~~~LSgGq~qrv~laral 155 (501)
T PRK11288 83 IIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYE-----AREQLEHLG--VDIDPDTPLKYLSIGQRQMVEIAKAL 155 (501)
T ss_pred EEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHH-----HHHHHHHcC--CCCCcCCchhhCCHHHHHHHHHHHHH
Confidence 9999998886 599999998631 122111111 112222221 11112334568999999999999996
Q ss_pred HH-----------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEE
Q 000746 780 FN-----------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKE 819 (1303)
Q Consensus 780 ~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~ 819 (1303)
.. +.+.+.. +++|+|+|||+++.+. .||+|++|++|+++.
T Consensus 156 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~ 220 (501)
T PRK11288 156 ARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVA 220 (501)
T ss_pred HhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 42 2233322 4789999999999875 599999999999864
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.2e-29 Score=272.63 Aligned_cols=181 Identities=34% Similarity=0.583 Sum_probs=155.7
Q ss_pred cEEEEeeEEEeCCC-CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc-------------CeE
Q 000746 640 AVSIKNGNFSWDSK-SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR-------------GTV 705 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~-~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~-------------~~i 705 (1303)
.++++|+++.|++. .++++|+||++++|++++|+||||||||||+++|+|+.+|.+|.+ .+. ..+
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 2 RIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSV-LLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred eEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeE-EECCEEhHHCCHHHHHhhE
Confidence 48899999999753 469999999999999999999999999999999999999988743 332 359
Q ss_pred EEEccCcccccccHHHHHccCCC-CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH---
Q 000746 706 AYVPQISWIFNATLRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN--- 781 (1303)
Q Consensus 706 ayv~Q~p~l~~~TireNI~~g~~-~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~--- 781 (1303)
+|++|+++++..|++||+.++.. .++++..+.++..++.+.++..|.|++|.+.+...+||||||||++||||+..
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999998999999988753 34556777888889988899999999999999999999999999999999542
Q ss_pred --------------------HHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEec
Q 000746 782 --------------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEG 821 (1303)
Q Consensus 782 --------------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g 821 (1303)
+.+.+..+++|+|++||+++.+..||++++|++|++++.|
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 3344444458999999999988889999999999998754
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-29 Score=252.09 Aligned_cols=170 Identities=25% Similarity=0.465 Sum_probs=142.5
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE---------------EcCeE
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV---------------IRGTV 705 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~---------------~~~~i 705 (1303)
|+|+||+..|+...++|+||||+|++||++-++||||||||||+++|.++..|+.|.... +|++|
T Consensus 2 I~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~I 81 (223)
T COG2884 2 IRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQI 81 (223)
T ss_pred eeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhee
Confidence 789999999998877999999999999999999999999999999999999999985432 56789
Q ss_pred EEEccCcccc-cccHHHHHccCCC---CC----hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHH
Q 000746 706 AYVPQISWIF-NATLRKNILFGSE---FD----PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMAR 777 (1303)
Q Consensus 706 ayv~Q~p~l~-~~TireNI~~g~~---~~----~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLAR 777 (1303)
|+|+||.-|. +-|+.||+.|.-. .. .++..++++.++|.+-...+| ..|||||+||+||||
T Consensus 82 GvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP-----------~~LSGGEQQRvaIAR 150 (223)
T COG2884 82 GVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP-----------SQLSGGEQQRVAIAR 150 (223)
T ss_pred eeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc-----------cccCchHHHHHHHHH
Confidence 9999999876 6799999998643 22 345667888888888888887 469999999999999
Q ss_pred HHHHH-----------------------HHhH-hcCCCEEEEEecCCCccccc-CEEEEEeCCEEEEec
Q 000746 778 AVFNS-----------------------CIKE-ELRGKTRILVTNQLHFLPHV-DRIILVSEGMIKEEG 821 (1303)
Q Consensus 778 Al~~~-----------------------~i~~-~~~~~TvilvtH~~~~l~~a-D~ii~l~~G~i~~~g 821 (1303)
|++++ .+.+ ...|.||+++||+.+.+... -+++.+++|+++...
T Consensus 151 AiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 151 AIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred HHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 97542 1222 12699999999999998764 679999999998654
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-28 Score=303.72 Aligned_cols=169 Identities=20% Similarity=0.338 Sum_probs=125.1
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCC--CCCceEEE--------------cCe
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP--LKDASVVI--------------RGT 704 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~--~~g~~~~~--------------~~~ 704 (1303)
++++|++++|++ .++|+|+||++++|++++|+||||||||||+++|.|+++| ++|. +.+ +..
T Consensus 2 l~i~~l~~~~~~-~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~-i~~~g~~~~~~~~~~~~~~~ 79 (500)
T TIGR02633 2 LEMKGIVKTFGG-VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGE-IYWSGSPLKASNIRDTERAG 79 (500)
T ss_pred EEEEeEEEEeCC-eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeE-EEECCEECCCCCHHHHHhCC
Confidence 689999999964 4699999999999999999999999999999999999986 6764 333 235
Q ss_pred EEEEccCccccc-ccHHHHHccCCCC-------ChhhHHHHHHHHhhHHHhhcC--CCCCCccccCCCCCCchHHHHHHH
Q 000746 705 VAYVPQISWIFN-ATLRKNILFGSEF-------DPAKYWKTVDVSALQHDLDLL--PDRDLTEIGERGVNISGGQKQRVS 774 (1303)
Q Consensus 705 iayv~Q~p~l~~-~TireNI~~g~~~-------~~~~~~~vl~~~~l~~~i~~l--p~g~~T~ige~G~~LSGGQkQRia 774 (1303)
++|++|++.++. .|++||+.++... +.++..+. ..+.++.+ ++..+ .....+||||||||++
T Consensus 80 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~---~~~~~~LSgG~~qrv~ 151 (500)
T TIGR02633 80 IVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLR-----AKNLLRELQLDADNV---TRPVGDYGGGQQQLVE 151 (500)
T ss_pred EEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHH-----HHHHHHHcCCCCCcc---cCchhhCCHHHHHHHH
Confidence 999999998875 5999999886431 11111111 11222222 11110 1224579999999999
Q ss_pred HHHHHHH-----------------------HHHhHh-cCCCEEEEEecCCCccc-ccCEEEEEeCCEEEE
Q 000746 775 MARAVFN-----------------------SCIKEE-LRGKTRILVTNQLHFLP-HVDRIILVSEGMIKE 819 (1303)
Q Consensus 775 LARAl~~-----------------------~~i~~~-~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~ 819 (1303)
||||++. +.+.+. .+++|+|+|||+++.+. .||+|++|++|+++.
T Consensus 152 iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~ 221 (500)
T TIGR02633 152 IAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVA 221 (500)
T ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEee
Confidence 9999642 233332 24789999999999875 599999999998864
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-29 Score=260.67 Aligned_cols=178 Identities=28% Similarity=0.445 Sum_probs=143.2
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE---------------EcCe
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV---------------IRGT 704 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~---------------~~~~ 704 (1303)
.|+++|++..||++..+|+||||+|++||+++|+|+|||||||||++|.|..+|++|.+.. +|.+
T Consensus 3 ~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~ 82 (258)
T COG3638 3 MIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRD 82 (258)
T ss_pred eEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHh
Confidence 5899999999988888999999999999999999999999999999999999999985432 2457
Q ss_pred EEEEccCcccc-cccHHHHHccCCC------------CChhhHHHHHH---HHhhHHHhhcCCCCCCccccCCCCCCchH
Q 000746 705 VAYVPQISWIF-NATLRKNILFGSE------------FDPAKYWKTVD---VSALQHDLDLLPDRDLTEIGERGVNISGG 768 (1303)
Q Consensus 705 iayv~Q~p~l~-~~TireNI~~g~~------------~~~~~~~~vl~---~~~l~~~i~~lp~g~~T~ige~G~~LSGG 768 (1303)
|||++|++-|. ..|+-+|++.|+- +++++...+++ ..++.+ ..-.+..+||||
T Consensus 83 iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~-----------~A~qra~~LSGG 151 (258)
T COG3638 83 IGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILD-----------KAYQRASTLSGG 151 (258)
T ss_pred ceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHH-----------HHHHHhccCCcc
Confidence 99999999987 5699999998752 23444444333 222222 223456789999
Q ss_pred HHHHHHHHHHHHHH-----------------------HHhH--hcCCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecC
Q 000746 769 QKQRVSMARAVFNS-----------------------CIKE--ELRGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGS 822 (1303)
Q Consensus 769 QkQRiaLARAl~~~-----------------------~i~~--~~~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~ 822 (1303)
|+|||+|||||.++ .+++ .-.|.|+|+.-|+++.. ++||||+-|++|+|+..|+
T Consensus 152 QQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~ 231 (258)
T COG3638 152 QQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGP 231 (258)
T ss_pred hhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCC
Confidence 99999999997642 1222 12589999999999985 6799999999999999999
Q ss_pred HHHHHh
Q 000746 823 FEELSK 828 (1303)
Q Consensus 823 ~~~l~~ 828 (1303)
.+|+.+
T Consensus 232 ~~el~~ 237 (258)
T COG3638 232 ASELTD 237 (258)
T ss_pred hhhhhH
Confidence 999653
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-28 Score=283.58 Aligned_cols=189 Identities=24% Similarity=0.348 Sum_probs=145.2
Q ss_pred CCCCcEEEEeeEEEeCCC----CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-----------
Q 000746 636 PELPAVSIKNGNFSWDSK----SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----------- 700 (1303)
Q Consensus 636 ~~~~~i~~~~~~f~~~~~----~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----------- 700 (1303)
++.+.++++|++|.|++. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|.+|.+..
T Consensus 17 ~~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~ 96 (320)
T PRK13631 17 SDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNN 96 (320)
T ss_pred CCCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccc
Confidence 344579999999999743 36999999999999999999999999999999999999999874321
Q ss_pred -----------------EcCeEEEEccCc--ccccccHHHHHccCCC---CChhhHHHHHHHHhhHHHhhcCCCCCC-cc
Q 000746 701 -----------------IRGTVAYVPQIS--WIFNATLRKNILFGSE---FDPAKYWKTVDVSALQHDLDLLPDRDL-TE 757 (1303)
Q Consensus 701 -----------------~~~~iayv~Q~p--~l~~~TireNI~~g~~---~~~~~~~~vl~~~~l~~~i~~lp~g~~-T~ 757 (1303)
.++.|+||+|+| ++|+.|++|||.++.. .++++..+.. .+.++.+ |.. ..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~-----~~~l~~~--gL~~~~ 169 (320)
T PRK13631 97 HELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLA-----KFYLNKM--GLDDSY 169 (320)
T ss_pred ccccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHH-----HHHHHHc--CCChhH
Confidence 124599999998 7899999999998742 2332222111 1222222 222 23
Q ss_pred ccCCCCCCchHHHHHHHHHHHHHH-----------------------HHHhHh-cCCCEEEEEecCCCcc-cccCEEEEE
Q 000746 758 IGERGVNISGGQKQRVSMARAVFN-----------------------SCIKEE-LRGKTRILVTNQLHFL-PHVDRIILV 812 (1303)
Q Consensus 758 ige~G~~LSGGQkQRiaLARAl~~-----------------------~~i~~~-~~~~TvilvtH~~~~l-~~aD~ii~l 812 (1303)
.+..+.+||||||||++||||+.. +.+.+. .+++|+|+|||+++.+ ..||+|++|
T Consensus 170 ~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl 249 (320)
T PRK13631 170 LERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVM 249 (320)
T ss_pred hcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 567788999999999999999642 233333 2589999999999976 579999999
Q ss_pred eCCEEEEecCHHHHHhcch
Q 000746 813 SEGMIKEEGSFEELSKHGR 831 (1303)
Q Consensus 813 ~~G~i~~~g~~~~l~~~~~ 831 (1303)
++|++++.|+++++.....
T Consensus 250 ~~G~i~~~g~~~~~~~~~~ 268 (320)
T PRK13631 250 DKGKILKTGTPYEIFTDQH 268 (320)
T ss_pred ECCEEEEeCCHHHHhcCHH
Confidence 9999999999999876543
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.7e-27 Score=313.10 Aligned_cols=172 Identities=26% Similarity=0.342 Sum_probs=128.9
Q ss_pred CccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCC---CCceEEE----------cCeEEEEccCcccc-cccHH
Q 000746 655 PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPL---KDASVVI----------RGTVAYVPQISWIF-NATLR 720 (1303)
Q Consensus 655 ~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~---~g~~~~~----------~~~iayv~Q~p~l~-~~Tir 720 (1303)
.+|+|+|+.+++|++++|+|||||||||||++|+|.++|. +|. +.+ ++.++||+|++.++ +.||+
T Consensus 179 ~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~-I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 257 (1470)
T PLN03140 179 TILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGE-ITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVK 257 (1470)
T ss_pred eeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeE-EEECCEechhhcccceeEEecccccCCCcCcHH
Confidence 5899999999999999999999999999999999999886 653 332 45699999998776 57999
Q ss_pred HHHccCCC-------CC-------hh---------hHHHHHHHHh---------hHHHhh--cCCCCCCccccCCC-CCC
Q 000746 721 KNILFGSE-------FD-------PA---------KYWKTVDVSA---------LQHDLD--LLPDRDLTEIGERG-VNI 765 (1303)
Q Consensus 721 eNI~~g~~-------~~-------~~---------~~~~vl~~~~---------l~~~i~--~lp~g~~T~ige~G-~~L 765 (1303)
||+.|+.. ++ ++ +++...+++. .++-++ .+.+..+|.||+.. ..|
T Consensus 258 EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rgl 337 (1470)
T PLN03140 258 ETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGI 337 (1470)
T ss_pred HHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCC
Confidence 99987521 11 01 1111111111 111222 34555688898765 579
Q ss_pred chHHHHHHHHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCC--cccccCEEEEEeCCEEE
Q 000746 766 SGGQKQRVSMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLH--FLPHVDRIILVSEGMIK 818 (1303)
Q Consensus 766 SGGQkQRiaLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~--~l~~aD~ii~l~~G~i~ 818 (1303)
|||||||++||||++. +.+++.. .++|+|+++|++. ....+|+|++|++|+++
T Consensus 338 SGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~iv 417 (1470)
T PLN03140 338 SGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIV 417 (1470)
T ss_pred CcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEE
Confidence 9999999999999542 3344432 4889999999974 46779999999999999
Q ss_pred EecCHHHHH
Q 000746 819 EEGSFEELS 827 (1303)
Q Consensus 819 ~~g~~~~l~ 827 (1303)
.+|+.+++.
T Consensus 418 y~G~~~~~~ 426 (1470)
T PLN03140 418 YQGPRDHIL 426 (1470)
T ss_pred EeCCHHHHH
Confidence 999998875
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.6e-29 Score=269.57 Aligned_cols=179 Identities=29% Similarity=0.487 Sum_probs=148.7
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-------------EcCeEE
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-------------IRGTVA 706 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-------------~~~~ia 706 (1303)
.++++|++|+|+++.++|+|+|++|++|+.++|+|+||||||||++.+.|+++|.+|.+.. ++++++
T Consensus 3 ~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG 82 (235)
T COG1122 3 MIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVG 82 (235)
T ss_pred eEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceE
Confidence 5789999999987668999999999999999999999999999999999999999975421 356799
Q ss_pred EEccCc--ccccccHHHHHccCCC---CCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHH
Q 000746 707 YVPQIS--WIFNATLRKNILFGSE---FDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMAR 777 (1303)
Q Consensus 707 yv~Q~p--~l~~~TireNI~~g~~---~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLAR 777 (1303)
||.|+| .+|..||.|.+.||.. .++ ++..++++.|++.+..+.. ..+||||||||+|||.
T Consensus 83 ~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~-----------p~~LSGGqkqRvaIA~ 151 (235)
T COG1122 83 LVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRP-----------PFNLSGGQKQRVAIAG 151 (235)
T ss_pred EEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCC-----------ccccCCcceeeHHhhH
Confidence 999999 7899999999999853 343 3566777778777654333 3679999999999999
Q ss_pred HHHH-----------------------HHHhHhc--CCCEEEEEecCCCcccc-cCEEEEEeCCEEEEecCHHHHHhc
Q 000746 778 AVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLPH-VDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 778 Al~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~~-aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
++.. +.+.+.. .++|+|++||+++.+.. ||++++|++|+++.+|+++++.++
T Consensus 152 vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 152 VLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred HHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 9531 2233332 26899999999999765 999999999999999999887654
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-28 Score=286.44 Aligned_cols=179 Identities=24% Similarity=0.375 Sum_probs=143.4
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE-----------cCeEEEE
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI-----------RGTVAYV 708 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~-----------~~~iayv 708 (1303)
.++++|+++.|+++.++|+|+||++++||+++|+||||||||||+++|+|+.+|++|. +.+ ++.|+||
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~-I~~~g~~i~~~~~~~r~ig~v 81 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGE-IWIGGRVVNELEPADRDIAMV 81 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceE-EEECCEECCCCCHHHCCEEEE
Confidence 4889999999943457999999999999999999999999999999999999999874 333 2469999
Q ss_pred ccCcccc-cccHHHHHccCCC---CCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHH
Q 000746 709 PQISWIF-NATLRKNILFGSE---FDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF 780 (1303)
Q Consensus 709 ~Q~p~l~-~~TireNI~~g~~---~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~ 780 (1303)
+|++.+| +.||+|||.|+.. .+. ++..++++..++.+..+. ...+||||||||++||||+.
T Consensus 82 ~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~LSgGq~QRvalARAL~ 150 (356)
T PRK11650 82 FQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDR-----------KPRELSGGQRQRVAMGRAIV 150 (356)
T ss_pred eCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhC-----------ChhhCCHHHHHHHHHHHHHh
Confidence 9999999 5699999998743 222 234455555566544333 33579999999999999953
Q ss_pred H-----------------------HHHhHhc--CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHHhcc
Q 000746 781 N-----------------------SCIKEEL--RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELSKHG 830 (1303)
Q Consensus 781 ~-----------------------~~i~~~~--~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~~~~ 830 (1303)
. +.+++.. .+.|+|+|||+++.+ ..||+|++|++|++++.|+++++..+.
T Consensus 151 ~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p 226 (356)
T PRK11650 151 REPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKP 226 (356)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCC
Confidence 2 2233333 278999999999865 579999999999999999999997653
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-28 Score=268.31 Aligned_cols=175 Identities=49% Similarity=0.786 Sum_probs=150.7
Q ss_pred EEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----------------EcCeE
Q 000746 642 SIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----------------IRGTV 705 (1303)
Q Consensus 642 ~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----------------~~~~i 705 (1303)
.+.|+.|+|+++.++++|+||+|++||+++|+||||||||||+++|+|+++|++|.+.. .+..+
T Consensus 2 ~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 81 (218)
T cd03290 2 QVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSV 81 (218)
T ss_pred eeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceE
Confidence 57899999986667999999999999999999999999999999999999998874321 12469
Q ss_pred EEEccCcccccccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH----
Q 000746 706 AYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN---- 781 (1303)
Q Consensus 706 ayv~Q~p~l~~~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~---- 781 (1303)
+|++|+|.+++.|++||+.++.++++++.+++++.+++.+.++.+|.|++|.++....+||||||||++||||++.
T Consensus 82 ~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~i 161 (218)
T cd03290 82 AYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNI 161 (218)
T ss_pred EEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 9999999999999999999877666667788889999988899999999999999999999999999999999542
Q ss_pred ---------------HH-----HhHhc--CCCEEEEEecCCCcccccCEEEEEeCCE
Q 000746 782 ---------------SC-----IKEEL--RGKTRILVTNQLHFLPHVDRIILVSEGM 816 (1303)
Q Consensus 782 ---------------~~-----i~~~~--~~~TvilvtH~~~~l~~aD~ii~l~~G~ 816 (1303)
+. +...+ .++|+|++||+.+.+..||++++|++|+
T Consensus 162 lllDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 162 VFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred EEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 11 11222 3689999999999998999999999884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-27 Score=297.41 Aligned_cols=183 Identities=20% Similarity=0.259 Sum_probs=126.3
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcC--eEEEEccCccccccc
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRG--TVAYVPQISWIFNAT 718 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~--~iayv~Q~p~l~~~T 718 (1303)
|+++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|. +.+.+ .++|++|++..+..|
T Consensus 2 i~i~nls~~~g~-~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~-I~~~~~~~i~~~~q~~~~~~~~ 79 (638)
T PRK10636 2 IVFSSLQIRRGV-RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGS-YTFPGNWQLAWVNQETPALPQP 79 (638)
T ss_pred EEEEEEEEEeCC-ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEecCCCEEEEEecCCCCCCCC
Confidence 689999999975 46999999999999999999999999999999999999999874 54544 589999976555567
Q ss_pred HHHHHccCCC-CC--------------hhhHHHHHH----------HHhhHHHhhcCCCCCC-ccccCCCCCCchHHHHH
Q 000746 719 LRKNILFGSE-FD--------------PAKYWKTVD----------VSALQHDLDLLPDRDL-TEIGERGVNISGGQKQR 772 (1303)
Q Consensus 719 ireNI~~g~~-~~--------------~~~~~~vl~----------~~~l~~~i~~lp~g~~-T~ige~G~~LSGGQkQR 772 (1303)
+.+++.-+.. +. ...+..... .....+.++.+ |.. ........+||||||||
T Consensus 80 ~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--gl~~~~~~~~~~~LSgGerqR 157 (638)
T PRK10636 80 ALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGL--GFSNEQLERPVSDFSGGWRMR 157 (638)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC--CCCchhhcCchhhcCHHHHHH
Confidence 7666542210 00 001100000 00111122332 221 11233456799999999
Q ss_pred HHHHHHHHHH-------------------HHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEE-EecCHHHHH
Q 000746 773 VSMARAVFNS-------------------CIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIK-EEGSFEELS 827 (1303)
Q Consensus 773 iaLARAl~~~-------------------~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~-~~g~~~~l~ 827 (1303)
++||||++.+ .+.+.+ .+.|+|+|||+.+++. .||+|++|++|++. ..|++++..
T Consensus 158 v~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~~ 235 (638)
T PRK10636 158 LNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSSFE 235 (638)
T ss_pred HHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEecCCHHHHH
Confidence 9999996421 122222 1579999999999976 59999999999996 467766543
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-27 Score=261.20 Aligned_cols=316 Identities=18% Similarity=0.243 Sum_probs=243.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCcchhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 000746 980 YWLIISSLRAAKRLHDSMLNSILRAPMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIV-ST 1058 (1303)
Q Consensus 980 ~~~~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~~~~~~~~~~i~~~v~i~~~-~~ 1058 (1303)
.++...+..+.+.+--+.|.|+..+++.|+-+..+|.+......-..-|+..+...+.+.+..++.+....+++... .|
T Consensus 4 ~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~ 83 (497)
T COG5265 4 RLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGW 83 (497)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhccc
Confidence 45566778888889999999999999999999888877766666666666666777777777777665555444433 45
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHhcChhhHhhcCcHHHHHHHHHHHHHhhhHHHHHHH
Q 000746 1059 ISLWAIMPLLILFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANT 1138 (1303)
Q Consensus 1059 ~~~~~~~pl~~~~~~i~~~~~~~~r~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~~~~~~~~~~d~~~~~~~~~~ 1138 (1303)
++..+.+..+++|.++........-..+|...++.+..++.-.+++-+-.|+|-|+.|+.+..++.+.++.+.+......
T Consensus 84 ~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~ 163 (497)
T COG5265 84 WFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVH 163 (497)
T ss_pred HHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHH
Confidence 55555555555444433332333344566666677788889999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhh
Q 000746 1139 SSNRWLTIRLETLGGIMIWLIATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYI 1218 (1303)
Q Consensus 1139 ~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~ 1218 (1303)
.+-.|+++....+.............. ....+....|.+...-.+..+++.|++.+...+.++.++..-.|+.++.+
T Consensus 164 ~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~---~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl 240 (497)
T COG5265 164 VSLLVLNFGQTAIFSTGLRVMMTMSAL---GVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLL 240 (497)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhhcHH---HHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhh
Confidence 777888877665544333222221111 11122344678888888999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCC-CcceEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCC
Q 000746 1219 DLPSEAPGMVESNRPPPAWP-SSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELE 1297 (1303)
Q Consensus 1219 ~~~~E~~~~~~~~~~~~~wp-~~G~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~ 1297 (1303)
+.+.|.. +.+..++.|| ..|.|.|+||+|.|.+.. |+|+|+||++++|+|+||||+||+||||+..+|+||||++
T Consensus 241 ~~~~~v~---d~pda~~L~~~~~g~v~F~~V~F~y~~~r-~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~ 316 (497)
T COG5265 241 DVEAEVS---DAPDAPPLWPVRLGAVAFINVSFAYDPRR-PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVN 316 (497)
T ss_pred ccchhhc---cCCCCccccccccceEEEEEEEeeccccc-hhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCc
Confidence 8876654 3344566775 458999999999998774 7999999999999999999999999999999999999999
Q ss_pred CCeee
Q 000746 1298 RGENI 1302 (1303)
Q Consensus 1298 ~G~I~ 1302 (1303)
+|+|.
T Consensus 317 sG~I~ 321 (497)
T COG5265 317 SGSIT 321 (497)
T ss_pred CceEE
Confidence 99985
|
|
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-25 Score=254.42 Aligned_cols=422 Identities=18% Similarity=0.221 Sum_probs=273.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcccccCCChH---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 391 VWRVGFRLRSTLVAAIFRKTLRLTHEARKGFPSG---KVTNMITTDANALQQIS-QQLHGLWSAPFRITLSMVLLYQQLG 466 (1303)
Q Consensus 391 ~~~~~~~lr~~L~~~i~~k~l~l~~~~~~~~~~g---~i~nl~s~Dv~~i~~~~-~~~~~~~~~~~~i~~~~~~l~~~lg 466 (1303)
..-...+.|..+..-++++-++-..-..-....+ .-=.+++.|+++..... .....+..+|+.++.-.+.++...|
T Consensus 146 ~~~L~Lr~R~~ltk~lh~~Y~k~~~yYkis~~d~ridNPDQrltqDv~kf~~~l~sl~s~l~~a~~di~~Y~~~l~~s~g 225 (659)
T KOG0060|consen 146 TNELYLRFRKNLTKYLHRLYFKGFTYYKLSNLDDRIDNPDQRLTQDVEKFCRQLSSLYSNLLKAPFDLVYYTFRLFESAG 225 (659)
T ss_pred HhhhHhHHHHHHHHHHHHHHhccceEEEecccccccCChHHHHhHHHHHHHHHHHHHHHhhhccceeeehhhhHHhhhcC
Confidence 3456677888888888887776432110000000 11257889999887643 3445566677777777777777766
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Q 000746 467 VASLLGSLMLVL-MVPLQTFIISKMRKLTKEGLQW-TDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRK 544 (1303)
Q Consensus 467 ~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~ 544 (1303)
|..++.+...++ ...++..+.+.+.+...++.+. -|-|..+ .++..+-+.|-.|+.++......++.-+.-.+..+.
T Consensus 226 ~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEGdfRy~h-~rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~ 304 (659)
T KOG0060|consen 226 WLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKLEGDFRYKH-SRLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLRE 304 (659)
T ss_pred cccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhhcchhhhe-eeeeecchhhhhhccCchHHHHHHHHHHHHHHHHHH
Confidence 654433222111 2222333333333332222222 2344443 366778889999999887777666655555555555
Q ss_pred HHHHHHHHHHHHHHHhHHhHHhhhhh-----hhh-hCCCCCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 545 AQFLSAFNSFILNSIPVVVTVVSFGT-----FTL-LGGDLTPARAFTSLS----LFAVLRFPLNMLPNLLSQVVNANVSL 614 (1303)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~f~~-----~~~-~~~~l~~~~~f~~l~----l~~~l~~pl~~l~~~~~~~~~a~~s~ 614 (1303)
......+..++.+....+..++.+.+ +.. ..++++++..+..++ .+..+...+..+...-..+.+-.+-.
T Consensus 305 l~~~r~~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~h~y~~~s~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt 384 (659)
T KOG0060|consen 305 LMSFRFWLGFIDNIFDYLGGILSYVVIAIPFFSGHVYDDLSPAELSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYT 384 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHhhheeeEEeeeeecccccCCcCHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHH
Confidence 55555555555444433333333221 111 235678877666543 23333444555555555566666667
Q ss_pred HHHHHHHHHHhhhc-------------------CCC----CCCCCCCCcEEEEeeEEEeCCCC-CccceeeeEecCCcEE
Q 000746 615 QRLEELLLAEERIL-------------------MPN----PPLEPELPAVSIKNGNFSWDSKS-PTLSNINLDIPVGSLV 670 (1303)
Q Consensus 615 ~Ri~~~l~~~~~~~-------------------~~~----~~~~~~~~~i~~~~~~f~~~~~~-~~L~~i~l~i~~G~~~ 670 (1303)
.||.++.+.-.+.. ... +...+++..|++++|++.-|++. .+.+|+||+|+.|+-+
T Consensus 385 ~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~~~~~~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~L 464 (659)
T KOG0060|consen 385 HRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSGKAEPADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNL 464 (659)
T ss_pred HHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCcccccccceEEeeeeeecCCCCCceeeeeeeeEecCCCeE
Confidence 78877764311100 000 12234556899999999988744 4677899999999999
Q ss_pred EEEcCCCCChHHHHHHHhcCCCCCCCceEE-Ec---CeEEEEccCcccccccHHHHHccCC--------CCChhhHHHHH
Q 000746 671 AIVGGTGEGKTSLVSAMLGELPPLKDASVV-IR---GTVAYVPQISWIFNATLRKNILFGS--------EFDPAKYWKTV 738 (1303)
Q Consensus 671 ~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-~~---~~iayv~Q~p~l~~~TireNI~~g~--------~~~~~~~~~vl 738 (1303)
.|+||||||||+|++.+.|+.+..+|.... .+ +.+-|+||.|+.-.||+||-+.+.. ..+++++.+.+
T Consensus 465 LItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~L 544 (659)
T KOG0060|consen 465 LITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRIL 544 (659)
T ss_pred EEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHH
Confidence 999999999999999999999877764433 22 3499999999999999999999872 24688999999
Q ss_pred HHHhhHHHhhcCCCCCCcc-ccCCCCCCchHHHHHHHHHHHHH--------HHH-----------HhHhc--CCCEEEEE
Q 000746 739 DVSALQHDLDLLPDRDLTE-IGERGVNISGGQKQRVSMARAVF--------NSC-----------IKEEL--RGKTRILV 796 (1303)
Q Consensus 739 ~~~~l~~~i~~lp~g~~T~-ige~G~~LSGGQkQRiaLARAl~--------~~~-----------i~~~~--~~~Tvilv 796 (1303)
+.++|.+-++.. +|.|++ +-|-...||+||+||+|.||-++ |+| +-+.. .|.|.|-|
T Consensus 545 e~v~L~hl~~r~-ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~giT~iSV 623 (659)
T KOG0060|consen 545 ENVQLGHLLERE-GGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREMGITFISV 623 (659)
T ss_pred HHhhhhhHHHHh-CCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHcCCeEEEe
Confidence 999998887775 455544 45667889999999999999854 332 11111 48999999
Q ss_pred ecCCCcccccCEEEEEeC
Q 000746 797 TNQLHFLPHVDRIILVSE 814 (1303)
Q Consensus 797 tH~~~~l~~aD~ii~l~~ 814 (1303)
.||.+.-++-|.++.|+.
T Consensus 624 gHRkSL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 624 GHRKSLWKFHDYVLRMDG 641 (659)
T ss_pred ccHHHHHhhhhEEEEecC
Confidence 999999999999999975
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-28 Score=255.42 Aligned_cols=179 Identities=28% Similarity=0.420 Sum_probs=140.8
Q ss_pred cEEEEeeEEEeCCCC---CccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-------------EcC
Q 000746 640 AVSIKNGNFSWDSKS---PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-------------IRG 703 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~---~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-------------~~~ 703 (1303)
.++++|+++.|+.+. ++++||||+|.+||..+|+|+||||||||+++|+|+.+|.+|.+.. .++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 588999999998765 6999999999999999999999999999999999999999975432 134
Q ss_pred eEEEEccCccc-c--cccHHHHHccCC-----CCChhhHHHHHHHHhhHHH-hhcCCCCCCccccCCCCCCchHHHHHHH
Q 000746 704 TVAYVPQISWI-F--NATLRKNILFGS-----EFDPAKYWKTVDVSALQHD-LDLLPDRDLTEIGERGVNISGGQKQRVS 774 (1303)
Q Consensus 704 ~iayv~Q~p~l-~--~~TireNI~~g~-----~~~~~~~~~vl~~~~l~~~-i~~lp~g~~T~ige~G~~LSGGQkQRia 774 (1303)
.|-+|+|||.- + .-||++-|.=+- +-.+++..++++..+|.+. +... ...||||||||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~-----------P~eLSGGQ~QRia 151 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRR-----------PHELSGGQRQRIA 151 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcC-----------chhcChhHHHHHH
Confidence 69999999963 2 457777765221 2224556777777777554 3333 4569999999999
Q ss_pred HHHHHH--------H-----------H----HHhHhc--CCCEEEEEecCCCcccc-cCEEEEEeCCEEEEecCHHHHHh
Q 000746 775 MARAVF--------N-----------S----CIKEEL--RGKTRILVTNQLHFLPH-VDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 775 LARAl~--------~-----------~----~i~~~~--~~~TvilvtH~~~~l~~-aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
||||+. | . .+.+.. .+-|.|+|||+++.+.+ ||||++|++|+++|.++.+++..
T Consensus 152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 999942 1 1 122222 46799999999999865 99999999999999999999876
Q ss_pred c
Q 000746 829 H 829 (1303)
Q Consensus 829 ~ 829 (1303)
.
T Consensus 232 ~ 232 (252)
T COG1124 232 H 232 (252)
T ss_pred C
Confidence 5
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-28 Score=283.92 Aligned_cols=178 Identities=25% Similarity=0.388 Sum_probs=140.2
Q ss_pred EEEEeeEEEeCCC---CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE---------------Ec
Q 000746 641 VSIKNGNFSWDSK---SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV---------------IR 702 (1303)
Q Consensus 641 i~~~~~~f~~~~~---~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~---------------~~ 702 (1303)
|+++|++++|+.+ .++|+|+||+|++||+++|+||||||||||+++|.|+.+|++|.+.. .+
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 7899999999632 36999999999999999999999999999999999999999875421 14
Q ss_pred CeEEEEccCcccc-cccHHHHHccCCC---CChh----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHH
Q 000746 703 GTVAYVPQISWIF-NATLRKNILFGSE---FDPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVS 774 (1303)
Q Consensus 703 ~~iayv~Q~p~l~-~~TireNI~~g~~---~~~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRia 774 (1303)
++|+|++|++.++ +.|++||+.++.. .+.+ +..+.++..+|.+. .......||||||||++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~-----------~~~~~~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDK-----------HDSYPSNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh-----------hhCChhhCCHHHHHHHH
Confidence 4799999999998 4799999997532 2222 23334444444322 22345689999999999
Q ss_pred HHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHh
Q 000746 775 MARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 775 LARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
||||+.. +.+++.. .+.|+|+|||+++.+. .||+|++|++|++++.|+++++..
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 9999642 2333332 2789999999999985 599999999999999999999875
Q ss_pred c
Q 000746 829 H 829 (1303)
Q Consensus 829 ~ 829 (1303)
+
T Consensus 231 ~ 231 (343)
T TIGR02314 231 H 231 (343)
T ss_pred C
Confidence 4
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=99.96 E-value=5e-28 Score=263.56 Aligned_cols=168 Identities=26% Similarity=0.488 Sum_probs=137.5
Q ss_pred CCCcEEEEeeEEEeCCC-CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------EcC
Q 000746 637 ELPAVSIKNGNFSWDSK-SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------IRG 703 (1303)
Q Consensus 637 ~~~~i~~~~~~f~~~~~-~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------~~~ 703 (1303)
+.+.++++|++++|+.. .++++|+||+|++|++++|+|+||||||||+++|+|+++|.+|.+.. .++
T Consensus 3 ~~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (207)
T cd03369 3 EHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRS 82 (207)
T ss_pred CCCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHh
Confidence 34569999999999753 47999999999999999999999999999999999999999875322 134
Q ss_pred eEEEEccCcccccccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH--
Q 000746 704 TVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN-- 781 (1303)
Q Consensus 704 ~iayv~Q~p~l~~~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~-- 781 (1303)
.|+|++|+|.++++|++||+.+..++++++..+.++ ++++...||||||||++||||++.
T Consensus 83 ~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~~p 144 (207)
T cd03369 83 SLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLKRP 144 (207)
T ss_pred hEEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhhCC
Confidence 699999999999999999998765444433222221 345678899999999999999642
Q ss_pred ---------------------HHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecC
Q 000746 782 ---------------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGS 822 (1303)
Q Consensus 782 ---------------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~ 822 (1303)
+.+++..+++|+|++||+++.+..+|++++|++|++.+.|+
T Consensus 145 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 145 RVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206 (207)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCC
Confidence 23444446899999999999988899999999999998875
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-28 Score=271.20 Aligned_cols=177 Identities=27% Similarity=0.429 Sum_probs=136.9
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE---------------EcCeE
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV---------------IRGTV 705 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~---------------~~~~i 705 (1303)
++++|+++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. .+..|
T Consensus 1 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i 79 (235)
T cd03261 1 IELRGLTKSFGG-RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRM 79 (235)
T ss_pred CeEEEEEEEECC-EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcce
Confidence 468999999964 46999999999999999999999999999999999999999874321 12459
Q ss_pred EEEccCcccccc-cHHHHHccCCC----CChhh----HHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHH
Q 000746 706 AYVPQISWIFNA-TLRKNILFGSE----FDPAK----YWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMA 776 (1303)
Q Consensus 706 ayv~Q~p~l~~~-TireNI~~g~~----~~~~~----~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLA 776 (1303)
+|++|++.++.. |++||+.++.. .++++ ..++++..++.+ .......+||||||||++||
T Consensus 80 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~~qrv~ia 148 (235)
T cd03261 80 GMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRG-----------AEDLYPAELSGGMKKRVALA 148 (235)
T ss_pred EEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCch-----------hhcCChhhCCHHHHHHHHHH
Confidence 999999999875 99999987632 22222 223333333322 12334467999999999999
Q ss_pred HHHHH-----------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHhc
Q 000746 777 RAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 777 RAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
||+.. +.+++.. .++|+|++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 149 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 227 (235)
T cd03261 149 RALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRAS 227 (235)
T ss_pred HHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcCC
Confidence 99542 2344433 3789999999999865 5999999999999999999887643
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-28 Score=282.42 Aligned_cols=179 Identities=27% Similarity=0.373 Sum_probs=142.4
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE-----------cCeEEE
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI-----------RGTVAY 707 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~-----------~~~iay 707 (1303)
+.++++|+++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+.+|++|. +.+ ++.|+|
T Consensus 5 ~~l~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~-I~~~g~~i~~~~~~~r~ig~ 82 (351)
T PRK11432 5 NFVVLKNITKRFGS-NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQ-IFIDGEDVTHRSIQQRDICM 82 (351)
T ss_pred cEEEEEeEEEEECC-eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceE-EEECCEECCCCCHHHCCEEE
Confidence 46899999999974 46899999999999999999999999999999999999999974 332 357999
Q ss_pred EccCccccc-ccHHHHHccCCC---CCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHH
Q 000746 708 VPQISWIFN-ATLRKNILFGSE---FDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAV 779 (1303)
Q Consensus 708 v~Q~p~l~~-~TireNI~~g~~---~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl 779 (1303)
|+|++.+|. .|++|||.|+.. .++ ++..++++..++.+. .......||||||||++||||+
T Consensus 83 vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~-----------~~r~~~~LSgGq~QRVaLARaL 151 (351)
T PRK11432 83 VFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGF-----------EDRYVDQISGGQQQRVALARAL 151 (351)
T ss_pred EeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHHHHHHHHHH
Confidence 999999995 699999998743 222 233334444444322 2234568999999999999996
Q ss_pred HH-----------------------HHHhHhcC--CCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHHhcc
Q 000746 780 FN-----------------------SCIKEELR--GKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELSKHG 830 (1303)
Q Consensus 780 ~~-----------------------~~i~~~~~--~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~~~~ 830 (1303)
.. +.+++..+ ++|+|+|||+.+.+ ..||+|++|++|++++.|+++++..+.
T Consensus 152 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p 228 (351)
T PRK11432 152 ILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQP 228 (351)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 42 23333332 79999999999985 669999999999999999999987653
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.1e-28 Score=275.69 Aligned_cols=180 Identities=26% Similarity=0.396 Sum_probs=143.2
Q ss_pred cEEEEeeEEEeCCC--CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------EcCeE
Q 000746 640 AVSIKNGNFSWDSK--SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------IRGTV 705 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~--~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------~~~~i 705 (1303)
.++++|++++|++. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|.+|.+.. .++.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999742 35999999999999999999999999999999999999999874321 12469
Q ss_pred EEEccCcc--cccccHHHHHccCCC---CCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHH
Q 000746 706 AYVPQISW--IFNATLRKNILFGSE---FDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMA 776 (1303)
Q Consensus 706 ayv~Q~p~--l~~~TireNI~~g~~---~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLA 776 (1303)
+|++|+|. ++..||+|||.++.. .++ ++..++++..++.+..+ ....+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKE-----------REPARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhh-----------CCcccCCHHHHHHHHHH
Confidence 99999984 567899999998742 232 33455556555554333 33468999999999999
Q ss_pred HHHHH-----------------------HHHhHhc--CCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhcc
Q 000746 777 RAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHG 830 (1303)
Q Consensus 777 RAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~ 830 (1303)
||+.. +.+.+.. .|+|+|++||+++.+..||+|++|++|++++.|+++++....
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~ 231 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSRG 231 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcCh
Confidence 99642 2344433 389999999999998889999999999999999999886553
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=7e-28 Score=281.68 Aligned_cols=179 Identities=27% Similarity=0.409 Sum_probs=143.4
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE-----------cCeEEE
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI-----------RGTVAY 707 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~-----------~~~iay 707 (1303)
+.++++|+++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+.+|++|.+ .+ ++.|+|
T Consensus 13 ~~L~l~~l~~~~~~-~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I-~~~g~~i~~~~~~~r~ig~ 90 (375)
T PRK09452 13 PLVELRGISKSFDG-KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRI-MLDGQDITHVPAENRHVNT 90 (375)
T ss_pred ceEEEEEEEEEECC-eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE-EECCEECCCCCHHHCCEEE
Confidence 46899999999974 468999999999999999999999999999999999999998743 32 246999
Q ss_pred EccCcccc-cccHHHHHccCCC---CCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHH
Q 000746 708 VPQISWIF-NATLRKNILFGSE---FDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAV 779 (1303)
Q Consensus 708 v~Q~p~l~-~~TireNI~~g~~---~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl 779 (1303)
|+|++.+| +.||+|||.|+.. .++ ++..++++..++.+..+. ...+||||||||++||||+
T Consensus 91 vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~p~~LSgGq~QRVaLARaL 159 (375)
T PRK09452 91 VFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQR-----------KPHQLSGGQQQRVAIARAV 159 (375)
T ss_pred EecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhC-----------ChhhCCHHHHHHHHHHHHH
Confidence 99999999 5599999998743 222 233445555555444333 3357999999999999996
Q ss_pred HH-----------------------HHHhHhc--CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHHhcc
Q 000746 780 FN-----------------------SCIKEEL--RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELSKHG 830 (1303)
Q Consensus 780 ~~-----------------------~~i~~~~--~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~~~~ 830 (1303)
.. +.+++.. .+.|+|+|||+.+.+ ..||+|++|++|+|++.|+++++..+.
T Consensus 160 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p 236 (375)
T PRK09452 160 VNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEP 236 (375)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 42 2333333 379999999999874 579999999999999999999997654
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.5e-28 Score=274.65 Aligned_cols=177 Identities=25% Similarity=0.406 Sum_probs=140.6
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------EcCeEEE
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------IRGTVAY 707 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------~~~~iay 707 (1303)
.++++|+++.|+.+.++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|.+.. .++.|+|
T Consensus 4 ~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 83 (274)
T PRK13647 4 IIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGL 83 (274)
T ss_pred eEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEE
Confidence 5899999999975457999999999999999999999999999999999999999874321 1246999
Q ss_pred EccCc--ccccccHHHHHccCCC---CCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHH
Q 000746 708 VPQIS--WIFNATLRKNILFGSE---FDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARA 778 (1303)
Q Consensus 708 v~Q~p--~l~~~TireNI~~g~~---~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARA 778 (1303)
++|+| .++..|++||+.|+.. .+. +++.++++.+++.+..+.. ...||||||||++||||
T Consensus 84 v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----------~~~LSgG~~qrv~lara 152 (274)
T PRK13647 84 VFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKP-----------PYHLSYGQKKRVAIAGV 152 (274)
T ss_pred EecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCC-----------hhhCCHHHHHHHHHHHH
Confidence 99998 5788999999998632 222 3445555555555433332 34799999999999999
Q ss_pred HHH-----------------------HHHhHhc-CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHH
Q 000746 779 VFN-----------------------SCIKEEL-RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELS 827 (1303)
Q Consensus 779 l~~-----------------------~~i~~~~-~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~ 827 (1303)
+.. +.+.+.. +++|+|++||+++.+ +.||+|++|++|++++.|+++++.
T Consensus 153 L~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 226 (274)
T PRK13647 153 LAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT 226 (274)
T ss_pred HHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence 642 2343332 479999999999987 569999999999999999987543
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-27 Score=265.06 Aligned_cols=180 Identities=24% Similarity=0.420 Sum_probs=148.8
Q ss_pred CCcEEEEeeEEEeCCC--CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------EcC
Q 000746 638 LPAVSIKNGNFSWDSK--SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------IRG 703 (1303)
Q Consensus 638 ~~~i~~~~~~f~~~~~--~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------~~~ 703 (1303)
.+.++++|++++|++. .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+.. .++
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 3579999999999753 36999999999999999999999999999999999999999975321 124
Q ss_pred eEEEEccCcccccccHHHHHccCCC-CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-
Q 000746 704 TVAYVPQISWIFNATLRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN- 781 (1303)
Q Consensus 704 ~iayv~Q~p~l~~~TireNI~~g~~-~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~- 781 (1303)
.++|++|++.+++.|++||+.++.. ...+++.+..+...+.+.++.+|.|.++.+.++..+||||||||++||||++.
T Consensus 89 ~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~ 168 (226)
T cd03248 89 KVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRN 168 (226)
T ss_pred hEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 6999999999999999999998653 22233344444455677888898888888899999999999999999999542
Q ss_pred ----------------------HHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEE
Q 000746 782 ----------------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMI 817 (1303)
Q Consensus 782 ----------------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i 817 (1303)
+.+.+..+++|+|++||+++.+..||+|++|++|++
T Consensus 169 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 169 PQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 334444457899999999999888999999999974
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.1e-28 Score=273.81 Aligned_cols=181 Identities=29% Similarity=0.443 Sum_probs=141.3
Q ss_pred cEEEEeeEEEeCCC----CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE--------------E
Q 000746 640 AVSIKNGNFSWDSK----SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV--------------I 701 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~----~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~--------------~ 701 (1303)
.++++|+++.|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|.+|.+.. .
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 37899999999742 36999999999999999999999999999999999999999874321 1
Q ss_pred cCeEEEEccCc--ccccccHHHHHccCCC---CChh----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHH
Q 000746 702 RGTVAYVPQIS--WIFNATLRKNILFGSE---FDPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQR 772 (1303)
Q Consensus 702 ~~~iayv~Q~p--~l~~~TireNI~~g~~---~~~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQR 772 (1303)
+.+|+|++|+| .+++.|++|||.++.. .+++ +..++++.++|. +.+........||||||||
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~---------~~~~~~~~~~~LSgGq~qr 152 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLD---------YEDYKDKSPFELSGGQKRR 152 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCC---------chhhccCCcccCCHHHHHH
Confidence 24699999998 5788999999998642 3332 233344444432 0122345567899999999
Q ss_pred HHHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHH
Q 000746 773 VSMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEEL 826 (1303)
Q Consensus 773 iaLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l 826 (1303)
++||||+.. +.+.+.. .++|+|++||+++.+ ..||+|++|++|++++.|+++++
T Consensus 153 v~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~ 232 (287)
T PRK13637 153 VAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREV 232 (287)
T ss_pred HHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999642 2344433 379999999999987 56999999999999999999988
Q ss_pred Hhc
Q 000746 827 SKH 829 (1303)
Q Consensus 827 ~~~ 829 (1303)
.+.
T Consensus 233 ~~~ 235 (287)
T PRK13637 233 FKE 235 (287)
T ss_pred HhC
Confidence 654
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9e-27 Score=280.08 Aligned_cols=182 Identities=24% Similarity=0.387 Sum_probs=132.6
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcC-eEEEEccCcccccc-
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRG-TVAYVPQISWIFNA- 717 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~-~iayv~Q~p~l~~~- 717 (1303)
.|.++|++++|+ .+++++|+|+++.+|++++|||+||+|||||+++|.|+..|++|.+....+ +++|++|++...+.
T Consensus 3 ~i~~~~ls~~~g-~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~ 81 (530)
T COG0488 3 MITLENLSLAYG-DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEK 81 (530)
T ss_pred eEEEeeeEEeeC-CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCc
Confidence 488999999995 457999999999999999999999999999999999999999975443333 79999999999854
Q ss_pred cHHHHHccCCCC-C--hhhHHHHHH------------------H-------HhhHHHhhcCCCCCCccccCCCCCCchHH
Q 000746 718 TLRKNILFGSEF-D--PAKYWKTVD------------------V-------SALQHDLDLLPDRDLTEIGERGVNISGGQ 769 (1303)
Q Consensus 718 TireNI~~g~~~-~--~~~~~~vl~------------------~-------~~l~~~i~~lp~g~~T~ige~G~~LSGGQ 769 (1303)
|++|.+..+... . ..+++++.. . ......+..|.-.. . ...-.+|||||
T Consensus 82 tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~--~-~~~~~~LSGG~ 158 (530)
T COG0488 82 TVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPD--E-DRPVSSLSGGW 158 (530)
T ss_pred cHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCc--c-cCchhhcCHHH
Confidence 999999987531 0 111221111 0 11112222222111 1 22335799999
Q ss_pred HHHHHHHHHHHHH-------------------HHhHh---cCCCEEEEEecCCCcccc-cCEEEEEeCCEEE-EecCHHH
Q 000746 770 KQRVSMARAVFNS-------------------CIKEE---LRGKTRILVTNQLHFLPH-VDRIILVSEGMIK-EEGSFEE 825 (1303)
Q Consensus 770 kQRiaLARAl~~~-------------------~i~~~---~~~~TvilvtH~~~~l~~-aD~ii~l~~G~i~-~~g~~~~ 825 (1303)
|.|++||||++.+ -+.+. .+| |+|+|||+.+++.. |++|+.+++|++. ..|.|+.
T Consensus 159 r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny~~ 237 (530)
T COG0488 159 RRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPG-TVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYSS 237 (530)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHhhheEEecCCceeEecCCHHH
Confidence 9999999997642 12232 356 99999999999976 8999999999776 3455554
Q ss_pred H
Q 000746 826 L 826 (1303)
Q Consensus 826 l 826 (1303)
.
T Consensus 238 ~ 238 (530)
T COG0488 238 Y 238 (530)
T ss_pred H
Confidence 4
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-27 Score=273.14 Aligned_cols=179 Identities=25% Similarity=0.414 Sum_probs=140.1
Q ss_pred EEEEeeEEEeCCCC----CccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----------------
Q 000746 641 VSIKNGNFSWDSKS----PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV---------------- 700 (1303)
Q Consensus 641 i~~~~~~f~~~~~~----~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~---------------- 700 (1303)
++++|++|+|+.+. ++|+|+||+|++||+++|+||||||||||+++|.|+++|++|.+..
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997432 5999999999999999999999999999999999999999874321
Q ss_pred EcCeEEEEccCc--ccccccHHHHHccCCC---CChh----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHH
Q 000746 701 IRGTVAYVPQIS--WIFNATLRKNILFGSE---FDPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQ 771 (1303)
Q Consensus 701 ~~~~iayv~Q~p--~l~~~TireNI~~g~~---~~~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQ 771 (1303)
.+..++|++|+| .+|+.|+.||+.|+.. .+++ ++.++++..++.++ .......+|||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~----------~~~~~~~~LSgGqkq 151 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADE----------FWEKSPFELSGGQMR 151 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChh----------hccCCcccCCHHHHH
Confidence 123599999998 7889999999998742 2222 23333443343221 123456789999999
Q ss_pred HHHHHHHHHH-----------------------HHHhHhc-CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHH
Q 000746 772 RVSMARAVFN-----------------------SCIKEEL-RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEEL 826 (1303)
Q Consensus 772 RiaLARAl~~-----------------------~~i~~~~-~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l 826 (1303)
|++||||+.. +.+.+.. +++|+|++||+++.+ ..||+|++|++|+++++|+++++
T Consensus 152 rvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~ 231 (288)
T PRK13643 152 RVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDV 231 (288)
T ss_pred HHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999642 2333322 489999999999987 56999999999999999999998
Q ss_pred Hhc
Q 000746 827 SKH 829 (1303)
Q Consensus 827 ~~~ 829 (1303)
..+
T Consensus 232 ~~~ 234 (288)
T PRK13643 232 FQE 234 (288)
T ss_pred HcC
Confidence 654
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-26 Score=290.54 Aligned_cols=182 Identities=21% Similarity=0.293 Sum_probs=125.6
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcC--eEEEEccCccc-cc
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRG--TVAYVPQISWI-FN 716 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~--~iayv~Q~p~l-~~ 716 (1303)
.++++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|. +.+.+ .++|++|++.. ..
T Consensus 3 ~l~i~~ls~~~~~-~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~-I~~~~~~~~~~l~q~~~~~~~ 80 (635)
T PRK11147 3 LISIHGAWLSFSD-APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGR-IIYEQDLIVARLQQDPPRNVE 80 (635)
T ss_pred EEEEeeEEEEeCC-ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeE-EEeCCCCEEEEeccCCCCCCC
Confidence 4789999999975 46999999999999999999999999999999999999998874 44544 47899998743 24
Q ss_pred ccHHHHHccCCC-------------------CChhhHHH---H---HH-------HHhhHHHhhcCCCCCCccccCCCCC
Q 000746 717 ATLRKNILFGSE-------------------FDPAKYWK---T---VD-------VSALQHDLDLLPDRDLTEIGERGVN 764 (1303)
Q Consensus 717 ~TireNI~~g~~-------------------~~~~~~~~---v---l~-------~~~l~~~i~~lp~g~~T~ige~G~~ 764 (1303)
+++.+++..+.. ..++.+.. + ++ .....+.++.+. .. .......
T Consensus 81 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg--l~--~~~~~~~ 156 (635)
T PRK11147 81 GTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLG--LD--PDAALSS 156 (635)
T ss_pred CCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCC--CC--CCCchhh
Confidence 678777643210 00000000 0 00 001111222221 11 1233467
Q ss_pred CchHHHHHHHHHHHHHHH-------------------HHhHhcC--CCEEEEEecCCCccc-ccCEEEEEeCCEEEE-ec
Q 000746 765 ISGGQKQRVSMARAVFNS-------------------CIKEELR--GKTRILVTNQLHFLP-HVDRIILVSEGMIKE-EG 821 (1303)
Q Consensus 765 LSGGQkQRiaLARAl~~~-------------------~i~~~~~--~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~-~g 821 (1303)
|||||||||+||||++.+ .+.+.++ +.|+|+|||+..++. .||+|++|++|+++. .|
T Consensus 157 LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~~~d~i~~L~~G~i~~~~g 236 (635)
T PRK11147 157 LSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKLVSYPG 236 (635)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEecC
Confidence 999999999999996431 1222221 369999999999986 499999999999974 47
Q ss_pred CHHHHH
Q 000746 822 SFEELS 827 (1303)
Q Consensus 822 ~~~~l~ 827 (1303)
++++..
T Consensus 237 ~~~~~~ 242 (635)
T PRK11147 237 NYDQYL 242 (635)
T ss_pred CHHHHH
Confidence 776543
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.6e-28 Score=266.66 Aligned_cols=175 Identities=26% Similarity=0.394 Sum_probs=135.1
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCC-----CCCCCceEE--------------E
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGEL-----PPLKDASVV--------------I 701 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~-----~~~~g~~~~--------------~ 701 (1303)
++++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|++ +|.+|.+.. .
T Consensus 1 i~~~~l~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (227)
T cd03260 1 IELRDLNVYYGD-KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLEL 79 (227)
T ss_pred CEEEEEEEEcCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHH
Confidence 468999999975 47999999999999999999999999999999999999 888874321 1
Q ss_pred cCeEEEEccCcccccccHHHHHccCCCC----C----hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHH
Q 000746 702 RGTVAYVPQISWIFNATLRKNILFGSEF----D----PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRV 773 (1303)
Q Consensus 702 ~~~iayv~Q~p~l~~~TireNI~~g~~~----~----~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRi 773 (1303)
++.++|++|++.+++.|++||+.++... + +++..++++..++.+.....++ +.+||||||||+
T Consensus 80 ~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~qrv 150 (227)
T cd03260 80 RRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQRL 150 (227)
T ss_pred HhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHHHH
Confidence 2369999999999988999999875321 1 1233444444444332222110 478999999999
Q ss_pred HHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHH
Q 000746 774 SMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEE 825 (1303)
Q Consensus 774 aLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~ 825 (1303)
+||||+.. +.+.+..+++|+|++||+++.+. .||++++|++|++++.|++++
T Consensus 151 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 151 CLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 99999642 23444434489999999999865 699999999999999998765
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-27 Score=274.35 Aligned_cols=180 Identities=28% Similarity=0.429 Sum_probs=140.2
Q ss_pred EEEEeeEEEeCCCC----CccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----------------
Q 000746 641 VSIKNGNFSWDSKS----PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV---------------- 700 (1303)
Q Consensus 641 i~~~~~~f~~~~~~----~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~---------------- 700 (1303)
|+++|++++|++.. ++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|.+..
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 78999999997532 5999999999999999999999999999999999999999875322
Q ss_pred --------------------EcCeEEEEccCc--ccccccHHHHHccCCC---CChhh----HHHHHHHHhhHHHhhcCC
Q 000746 701 --------------------IRGTVAYVPQIS--WIFNATLRKNILFGSE---FDPAK----YWKTVDVSALQHDLDLLP 751 (1303)
Q Consensus 701 --------------------~~~~iayv~Q~p--~l~~~TireNI~~g~~---~~~~~----~~~vl~~~~l~~~i~~lp 751 (1303)
.++.|+||+|+| .++..|++|||.|+.. .++++ ..++++.++|.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~----- 157 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDES----- 157 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChh-----
Confidence 123589999986 5788899999998742 33322 3333443333211
Q ss_pred CCCCccccCCCCCCchHHHHHHHHHHHHHH-----------------------HHHhHhc-CCCEEEEEecCCCcc-ccc
Q 000746 752 DRDLTEIGERGVNISGGQKQRVSMARAVFN-----------------------SCIKEEL-RGKTRILVTNQLHFL-PHV 806 (1303)
Q Consensus 752 ~g~~T~ige~G~~LSGGQkQRiaLARAl~~-----------------------~~i~~~~-~~~TvilvtH~~~~l-~~a 806 (1303)
.......+||||||||++||||+.. +.+++.. .++|+|+|||+++.+ ..|
T Consensus 158 -----~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~a 232 (305)
T PRK13651 158 -----YLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWT 232 (305)
T ss_pred -----hhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhC
Confidence 1234567899999999999999642 2333332 489999999999875 679
Q ss_pred CEEEEEeCCEEEEecCHHHHHhcc
Q 000746 807 DRIILVSEGMIKEEGSFEELSKHG 830 (1303)
Q Consensus 807 D~ii~l~~G~i~~~g~~~~l~~~~ 830 (1303)
|+|++|++|++++.|+++++.++.
T Consensus 233 drv~vl~~G~i~~~g~~~~~~~~~ 256 (305)
T PRK13651 233 KRTIFFKDGKIIKDGDTYDILSDN 256 (305)
T ss_pred CEEEEEECCEEEEECCHHHHhcCH
Confidence 999999999999999999986543
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.4e-28 Score=280.88 Aligned_cols=178 Identities=28% Similarity=0.402 Sum_probs=141.6
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE-----------cCeEEEE
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI-----------RGTVAYV 708 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~-----------~~~iayv 708 (1303)
.++++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+.+|++|. +.+ ++.|+||
T Consensus 4 ~l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~-I~i~g~~~~~~~~~~r~ig~v 81 (353)
T TIGR03265 4 YLSIDNIRKRFGA-FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGT-IYQGGRDITRLPPQKRDYGIV 81 (353)
T ss_pred EEEEEEEEEEeCC-eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceE-EEECCEECCCCCHHHCCEEEE
Confidence 5899999999975 46899999999999999999999999999999999999999874 333 2469999
Q ss_pred ccCcccc-cccHHHHHccCCC---CChh----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHH
Q 000746 709 PQISWIF-NATLRKNILFGSE---FDPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF 780 (1303)
Q Consensus 709 ~Q~p~l~-~~TireNI~~g~~---~~~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~ 780 (1303)
+|++.+| +.|++|||.|+.. .+.+ +..++++..+|.+ .......+||||||||++||||+.
T Consensus 82 ~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~-----------~~~~~~~~LSgGq~QRvaLARaL~ 150 (353)
T TIGR03265 82 FQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPG-----------SERKYPGQLSGGQQQRVALARALA 150 (353)
T ss_pred eCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCc-----------hhhCChhhCCHHHHHHHHHHHHHh
Confidence 9999999 5799999998742 2222 2333333333322 233456789999999999999964
Q ss_pred H-----------------------HHHhHhc--CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHHhcc
Q 000746 781 N-----------------------SCIKEEL--RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELSKHG 830 (1303)
Q Consensus 781 ~-----------------------~~i~~~~--~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~~~~ 830 (1303)
. +.+++.. .+.|+|+|||+.+.+ ..||+|++|++|++++.|+++++.++.
T Consensus 151 ~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p 226 (353)
T TIGR03265 151 TSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHP 226 (353)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 2 2233332 278999999999985 569999999999999999999998653
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.3e-28 Score=268.52 Aligned_cols=180 Identities=23% Similarity=0.329 Sum_probs=142.7
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCC---CCCCceEEE-------------cC
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELP---PLKDASVVI-------------RG 703 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~---~~~g~~~~~-------------~~ 703 (1303)
.++++|+++.|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++ |.+|. +.+ ++
T Consensus 2 ~~~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~-i~~~g~~i~~~~~~~~~~ 79 (246)
T PRK14269 2 IAKTTNLNLFYGK-KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGL-VEIEGKDVKNQDVVALRK 79 (246)
T ss_pred ceeeeeeEEEECC-EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceE-EEECCEecccCCHHHHhh
Confidence 4789999999974 479999999999999999999999999999999999974 57764 332 34
Q ss_pred eEEEEccCcccccccHHHHHccCCCC---------ChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHH
Q 000746 704 TVAYVPQISWIFNATLRKNILFGSEF---------DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVS 774 (1303)
Q Consensus 704 ~iayv~Q~p~l~~~TireNI~~g~~~---------~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRia 774 (1303)
.++|++|+|.+|+.|++||+.++... ++++..+.++.+++.+.+. +...+++.+||||||||++
T Consensus 80 ~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~qrv~ 152 (246)
T PRK14269 80 NVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVK-------DKLKQNALALSGGQQQRLC 152 (246)
T ss_pred hEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhh-------HHhcCCcccCCHHHHHHHH
Confidence 69999999999999999999876321 1123444555555543332 1234567889999999999
Q ss_pred HHHHHH-----------------------HHHHhHhcCCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHh
Q 000746 775 MARAVF-----------------------NSCIKEELRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 775 LARAl~-----------------------~~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
||||++ .+.+.+..+++|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus 153 laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 230 (246)
T PRK14269 153 IARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFE 230 (246)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHh
Confidence 999954 234445446899999999999865 699999999999999999998864
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-27 Score=272.33 Aligned_cols=180 Identities=28% Similarity=0.460 Sum_probs=140.6
Q ss_pred EEEEeeEEEeCCC----CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----E-----------
Q 000746 641 VSIKNGNFSWDSK----SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----I----------- 701 (1303)
Q Consensus 641 i~~~~~~f~~~~~----~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----~----------- 701 (1303)
++++|++++|++. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.+.. +
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 7899999999742 36999999999999999999999999999999999999999874321 1
Q ss_pred -cCeEEEEccCc--ccccccHHHHHccCCC---CChh----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHH
Q 000746 702 -RGTVAYVPQIS--WIFNATLRKNILFGSE---FDPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQ 771 (1303)
Q Consensus 702 -~~~iayv~Q~p--~l~~~TireNI~~g~~---~~~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQ 771 (1303)
++.|+||+|+| .+++.|++|||.|+.. .+++ +..++++.++|.+++ ......+|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~~~~LSgGq~q 152 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEEL----------LARSPFELSGGQMR 152 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhh----------hhCCcccCCHHHHH
Confidence 23599999998 6888999999998632 2322 334444444443221 12345689999999
Q ss_pred HHHHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHH
Q 000746 772 RVSMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEE 825 (1303)
Q Consensus 772 RiaLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~ 825 (1303)
|++||||+.. +.+.+.. .+.|+|++||+++.+ ..||+|++|++|++++.|++++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 232 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999642 2333332 378999999999986 4699999999999999999998
Q ss_pred HHhcc
Q 000746 826 LSKHG 830 (1303)
Q Consensus 826 l~~~~ 830 (1303)
+.+..
T Consensus 233 ~~~~~ 237 (290)
T PRK13634 233 IFADP 237 (290)
T ss_pred HhcCH
Confidence 86543
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-27 Score=269.97 Aligned_cols=182 Identities=28% Similarity=0.421 Sum_probs=144.6
Q ss_pred cEEEEeeEEEeCC-CCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------EcCeEE
Q 000746 640 AVSIKNGNFSWDS-KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------IRGTVA 706 (1303)
Q Consensus 640 ~i~~~~~~f~~~~-~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------~~~~ia 706 (1303)
.++++|+++.|+. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.+.. .++.|+
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 5899999999974 346999999999999999999999999999999999999999874321 123699
Q ss_pred EEccCc--ccccccHHHHHccCCC---CCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHH
Q 000746 707 YVPQIS--WIFNATLRKNILFGSE---FDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMAR 777 (1303)
Q Consensus 707 yv~Q~p--~l~~~TireNI~~g~~---~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLAR 777 (1303)
|++|+| .+++.|++|||.++.. .++ ++..++++.++|.+.++.. ...||||||||++|||
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LS~G~~qrv~lar 153 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNRE-----------PHRLSGGQKQRVAIAG 153 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCC-----------cccCCHHHHHHHHHHH
Confidence 999998 4668899999998632 222 2345555555665444433 3579999999999999
Q ss_pred HHHH-----------------------HHHhHhcC--CCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhcchH
Q 000746 778 AVFN-----------------------SCIKEELR--GKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRL 832 (1303)
Q Consensus 778 Al~~-----------------------~~i~~~~~--~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~~~ 832 (1303)
|+.. +.+.+..+ ++|+|++||+++.+..||+|++|++|++++.|+.+++.+....
T Consensus 154 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~ 233 (279)
T PRK13635 154 VLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKSGHM 233 (279)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcCHHH
Confidence 9642 33444332 7899999999999888999999999999999999988765443
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-27 Score=269.78 Aligned_cols=180 Identities=26% Similarity=0.405 Sum_probs=142.9
Q ss_pred CcEEEEeeEEEeCCC-CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCC--ceEEE-------------c
Q 000746 639 PAVSIKNGNFSWDSK-SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKD--ASVVI-------------R 702 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~-~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g--~~~~~-------------~ 702 (1303)
..++++|+++.|++. .++++|+||+|++||+++|+||||||||||+++|+|+++|.+| |.+.+ +
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 358999999999743 4699999999999999999999999999999999999999873 44433 2
Q ss_pred CeEEEEccCcc--cccccHHHHHccCCC---CChh----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHH
Q 000746 703 GTVAYVPQISW--IFNATLRKNILFGSE---FDPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRV 773 (1303)
Q Consensus 703 ~~iayv~Q~p~--l~~~TireNI~~g~~---~~~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRi 773 (1303)
..++|++|+|. +++.|++|||.++.. .+++ +..++++.+++.+..+ ....+||||||||+
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LS~G~~qrv 152 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYID-----------SEPANLSGGQKQRV 152 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhc-----------CCcccCCHHHHHHH
Confidence 46999999984 668899999987632 2332 3444555555544333 33468999999999
Q ss_pred HHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHh
Q 000746 774 SMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 774 aLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
+||||+.. +.+.+.. .++|+|++||+++.+..||++++|++|++++.|+++++.+
T Consensus 153 ~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 153 AIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999642 2344433 2789999999999988899999999999999999998865
Q ss_pred c
Q 000746 829 H 829 (1303)
Q Consensus 829 ~ 829 (1303)
.
T Consensus 233 ~ 233 (282)
T PRK13640 233 K 233 (282)
T ss_pred C
Confidence 4
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-27 Score=263.80 Aligned_cols=179 Identities=22% Similarity=0.337 Sum_probs=141.8
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------EcCeEEE
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------IRGTVAY 707 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------~~~~iay 707 (1303)
.++++|++++|++ .++++|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..++|
T Consensus 3 ~l~~~~l~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~ 81 (241)
T PRK14250 3 EIEFKEVSYSSFG-KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGM 81 (241)
T ss_pred eEEEEeEEEEeCC-eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEE
Confidence 4789999999964 46999999999999999999999999999999999999999874321 1346999
Q ss_pred EccCcccccccHHHHHccCCCC---ChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH---
Q 000746 708 VPQISWIFNATLRKNILFGSEF---DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN--- 781 (1303)
Q Consensus 708 v~Q~p~l~~~TireNI~~g~~~---~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~--- 781 (1303)
++|++.+++.|++||+.++... ++++..+.++..++.++ .......+||||||||++||||++.
T Consensus 82 ~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LS~G~~qrl~la~al~~~p~ 151 (241)
T PRK14250 82 VFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKE----------YATRDVKNLSGGEAQRVSIARTLANNPE 151 (241)
T ss_pred EecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHH----------HhhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999976432 12334444444444211 1224567899999999999999542
Q ss_pred --------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHhc
Q 000746 782 --------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 782 --------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
+.+.... .++|+|++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 152 llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (241)
T PRK14250 152 VLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTN 222 (241)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcC
Confidence 2344432 3799999999999875 5999999999999999999988754
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-27 Score=264.55 Aligned_cols=176 Identities=27% Similarity=0.409 Sum_probs=137.2
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----------EcCeEEEEcc
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----------IRGTVAYVPQ 710 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----------~~~~iayv~Q 710 (1303)
++++|+++.|++ .++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .++.++|++|
T Consensus 3 l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q 81 (239)
T cd03296 3 IEVRNVSKRFGD-FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQ 81 (239)
T ss_pred EEEEeEEEEECC-EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEec
Confidence 789999999975 46999999999999999999999999999999999999998874321 1246999999
Q ss_pred Cccccc-ccHHHHHccCCCC-------Chh----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHH
Q 000746 711 ISWIFN-ATLRKNILFGSEF-------DPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARA 778 (1303)
Q Consensus 711 ~p~l~~-~TireNI~~g~~~-------~~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARA 778 (1303)
+|.++. .|++||+.++... +.+ +..+.++..++. ........+||||||||++||||
T Consensus 82 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrl~la~a 150 (239)
T cd03296 82 HYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLD-----------WLADRYPAQLSGGQRQRVALARA 150 (239)
T ss_pred CCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCCh-----------hhhhcChhhCCHHHHHHHHHHHH
Confidence 999885 6999999986421 111 122233333332 22334557899999999999999
Q ss_pred HHH-----------------------HHHhHhc--CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHHh
Q 000746 779 VFN-----------------------SCIKEEL--RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 779 l~~-----------------------~~i~~~~--~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
+.. +.+.+.. .++|+|++||+++.+ ..||+|++|++|++++.|+++++.+
T Consensus 151 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 151 LAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 542 2344432 278999999999976 4599999999999999999988764
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-27 Score=248.54 Aligned_cols=186 Identities=28% Similarity=0.450 Sum_probs=147.6
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-------------EcCeEE
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-------------IRGTVA 706 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-------------~~~~ia 706 (1303)
.++++|++..|.. .++|++|||++++||+++++|+||+|||||+++|+|..++.+|.+.. .+..|+
T Consensus 3 mL~v~~l~~~YG~-~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~ 81 (237)
T COG0410 3 MLEVENLSAGYGK-IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIA 81 (237)
T ss_pred ceeEEeEeecccc-eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeE
Confidence 4789999999975 57999999999999999999999999999999999999998874432 234699
Q ss_pred EEccCcccc-cccHHHHHccCCCCChh-hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH---
Q 000746 707 YVPQISWIF-NATLRKNILFGSEFDPA-KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN--- 781 (1303)
Q Consensus 707 yv~Q~p~l~-~~TireNI~~g~~~~~~-~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~--- 781 (1303)
||||.-.+| +.||.||+.+|....++ +..+ ..+++-.+.+|. +......++.+|||||+|-+|+|||++.
T Consensus 82 ~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~----~~~e~v~~lFP~-Lker~~~~aG~LSGGEQQMLAiaRALm~~Pk 156 (237)
T COG0410 82 YVPEGRRIFPRLTVEENLLLGAYARRDKEAQE----RDLEEVYELFPR-LKERRNQRAGTLSGGEQQMLAIARALMSRPK 156 (237)
T ss_pred eCcccccchhhCcHHHHHhhhhhccccccccc----ccHHHHHHHChh-HHHHhcCcccCCChHHHHHHHHHHHHhcCCC
Confidence 999999999 56999999988532221 1111 114445566664 3344567889999999999999999542
Q ss_pred --------------------HHHhHhcC--CCEEEEEecCCCc-ccccCEEEEEeCCEEEEecCHHHHHhcch
Q 000746 782 --------------------SCIKEELR--GKTRILVTNQLHF-LPHVDRIILVSEGMIKEEGSFEELSKHGR 831 (1303)
Q Consensus 782 --------------------~~i~~~~~--~~TvilvtH~~~~-l~~aD~ii~l~~G~i~~~g~~~~l~~~~~ 831 (1303)
+.|++..+ +.||++|-++... ++.|||.++|++|+|+.+|+.+||.++..
T Consensus 157 lLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~~ 229 (237)
T COG0410 157 LLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPD 229 (237)
T ss_pred EEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCHH
Confidence 22333332 5799999999988 67899999999999999999999987644
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-27 Score=271.33 Aligned_cols=184 Identities=24% Similarity=0.381 Sum_probs=140.9
Q ss_pred cEEEEeeEEEeCCC----CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE---------------
Q 000746 640 AVSIKNGNFSWDSK----SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV--------------- 700 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~----~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~--------------- 700 (1303)
.++++|++++|++. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.+..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 37899999999642 36999999999999999999999999999999999999999874321
Q ss_pred -EcCeEEEEccCc--ccccccHHHHHccCCC---CChhhHHHHHHHHhhHHHhhcCCCCCCc-cccCCCCCCchHHHHHH
Q 000746 701 -IRGTVAYVPQIS--WIFNATLRKNILFGSE---FDPAKYWKTVDVSALQHDLDLLPDRDLT-EIGERGVNISGGQKQRV 773 (1303)
Q Consensus 701 -~~~~iayv~Q~p--~l~~~TireNI~~g~~---~~~~~~~~vl~~~~l~~~i~~lp~g~~T-~ige~G~~LSGGQkQRi 773 (1303)
.++.|+||+|+| .+|+.|+.|||.++.. .+.++..+.+ .+.++.+ |+++ .......+||||||||+
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~-----~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv 154 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYA-----HRLLMDL--GFSRDVMSQSPFQMSGGQMRKI 154 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHH-----HHHHHHc--CCChhhhhCCcccCCHHHHHHH
Confidence 133699999998 5888899999998642 2333222211 1112222 3332 23356778999999999
Q ss_pred HHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHH
Q 000746 774 SMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELS 827 (1303)
Q Consensus 774 aLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~ 827 (1303)
+||||+.. +.+++.. .++|+|++||+++.+ ..||+|++|++|++++.|+++++.
T Consensus 155 ~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 155 AIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELF 234 (286)
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999642 2344432 479999999999986 569999999999999999999886
Q ss_pred hcc
Q 000746 828 KHG 830 (1303)
Q Consensus 828 ~~~ 830 (1303)
+..
T Consensus 235 ~~~ 237 (286)
T PRK13646 235 KDK 237 (286)
T ss_pred hCH
Confidence 543
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-27 Score=279.49 Aligned_cols=180 Identities=21% Similarity=0.319 Sum_probs=141.9
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCC--CceEE----------EcCeEE
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLK--DASVV----------IRGTVA 706 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~--g~~~~----------~~~~ia 706 (1303)
+.++++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+.+|++ |.+.. .++.|+
T Consensus 4 ~~l~~~~l~~~~~~-~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig 82 (362)
T TIGR03258 4 GGIRIDHLRVAYGA-NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLA 82 (362)
T ss_pred eEEEEEEEEEEECC-eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEE
Confidence 46899999999975 469999999999999999999999999999999999999988 85321 124699
Q ss_pred EEccCccccc-ccHHHHHccCCC---CCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHH
Q 000746 707 YVPQISWIFN-ATLRKNILFGSE---FDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARA 778 (1303)
Q Consensus 707 yv~Q~p~l~~-~TireNI~~g~~---~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARA 778 (1303)
||+|++.+|. .|++|||.|+.. .++ ++..++++..+|.+.. .....+||||||||++||||
T Consensus 83 ~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~-----------~~~~~~LSgGq~QRvaLARA 151 (362)
T TIGR03258 83 LLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAA-----------AHLPAQLSGGMQQRIAIARA 151 (362)
T ss_pred EEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchh-----------hCChhhCCHHHHHHHHHHHH
Confidence 9999999995 599999998642 222 2333444444443322 33446899999999999999
Q ss_pred HHH-----------------------HHHhHhcC---CCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHHhcc
Q 000746 779 VFN-----------------------SCIKEELR---GKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELSKHG 830 (1303)
Q Consensus 779 l~~-----------------------~~i~~~~~---~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~~~~ 830 (1303)
+.. +.+++..+ +.|+|+|||+++.+ ..||+|++|++|++++.|+++++..+.
T Consensus 152 L~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~p 230 (362)
T TIGR03258 152 IAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAP 230 (362)
T ss_pred HhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 642 22333322 78999999999985 569999999999999999999998653
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-27 Score=267.35 Aligned_cols=182 Identities=23% Similarity=0.343 Sum_probs=141.7
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCC-----CCCCceEEE------------
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELP-----PLKDASVVI------------ 701 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~-----~~~g~~~~~------------ 701 (1303)
+.++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|. +.+
T Consensus 5 ~~l~~~~l~~~~~~-~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~-i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 5 PKMEARGLSFFYGD-FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGE-ILLDGENIYDPHVDV 82 (253)
T ss_pred cEEEEeeeEEEECC-eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceE-EEECCEEccccccCH
Confidence 56999999999974 469999999999999999999999999999999999864 46664 322
Q ss_pred ---cCeEEEEccCcccccccHHHHHccCCC---C-C----hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHH
Q 000746 702 ---RGTVAYVPQISWIFNATLRKNILFGSE---F-D----PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQK 770 (1303)
Q Consensus 702 ---~~~iayv~Q~p~l~~~TireNI~~g~~---~-~----~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQk 770 (1303)
++.++|++|++.+|+.|++||+.++.. . + +++..+.++.+++.+.+ .+.......+||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgGq~ 155 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEV-------KDRLHESALGLSGGQQ 155 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhh-------hHHhhCCcccCCHHHH
Confidence 346999999999998999999987531 1 1 12333444444443222 1234566788999999
Q ss_pred HHHHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHH
Q 000746 771 QRVSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEEL 826 (1303)
Q Consensus 771 QRiaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l 826 (1303)
||++||||+.. +.+.+..+++|+|++||+++.+ ..||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999542 3344444578999999999987 46999999999999999999887
Q ss_pred Hhc
Q 000746 827 SKH 829 (1303)
Q Consensus 827 ~~~ 829 (1303)
.+.
T Consensus 236 ~~~ 238 (253)
T PRK14242 236 FTR 238 (253)
T ss_pred HcC
Confidence 643
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-27 Score=277.10 Aligned_cols=178 Identities=29% Similarity=0.426 Sum_probs=140.2
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE-----------cCeEEEE
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI-----------RGTVAYV 708 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~-----------~~~iayv 708 (1303)
.++++|+++.|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.+ .+ ++.|+||
T Consensus 2 ~L~i~~l~~~~~~-~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I-~i~g~~i~~~~~~~r~i~~v 79 (353)
T PRK10851 2 SIEIANIKKSFGR-TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHI-RFHGTDVSRLHARDRKVGFV 79 (353)
T ss_pred EEEEEEEEEEeCC-eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEECCCCCHHHCCEEEE
Confidence 3789999999975 469999999999999999999999999999999999999998743 32 2469999
Q ss_pred ccCccccc-ccHHHHHccCCCC-------Ch----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHH
Q 000746 709 PQISWIFN-ATLRKNILFGSEF-------DP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMA 776 (1303)
Q Consensus 709 ~Q~p~l~~-~TireNI~~g~~~-------~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLA 776 (1303)
+|++.+|. .|++|||.|+... +. ++..+.++..++.+. .......||||||||++||
T Consensus 80 ~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-----------~~~~~~~LSgGq~QRvalA 148 (353)
T PRK10851 80 FQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHL-----------ADRYPAQLSGGQKQRVALA 148 (353)
T ss_pred ecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchh-----------hhCChhhCCHHHHHHHHHH
Confidence 99999995 6999999987431 21 122333333333222 2234568999999999999
Q ss_pred HHHHH-----------------------HHHhHhcC--CCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHHhcc
Q 000746 777 RAVFN-----------------------SCIKEELR--GKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELSKHG 830 (1303)
Q Consensus 777 RAl~~-----------------------~~i~~~~~--~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~~~~ 830 (1303)
||+.. +.+.+..+ ++|+|+|||+++.+ ..||+|++|++|++++.|+++++..++
T Consensus 149 rAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~p 228 (353)
T PRK10851 149 RALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREP 228 (353)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 99642 23333332 78999999999985 569999999999999999999997653
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-27 Score=266.83 Aligned_cols=175 Identities=27% Similarity=0.395 Sum_probs=136.6
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE---------------EcCeE
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV---------------IRGTV 705 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~---------------~~~~i 705 (1303)
++++|++++|+.+.++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..+
T Consensus 2 l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 81 (243)
T TIGR02315 2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRI 81 (243)
T ss_pred eEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhhe
Confidence 678999999973357999999999999999999999999999999999999999874321 12359
Q ss_pred EEEccCccccc-ccHHHHHccCCCC------------C---hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHH
Q 000746 706 AYVPQISWIFN-ATLRKNILFGSEF------------D---PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQ 769 (1303)
Q Consensus 706 ayv~Q~p~l~~-~TireNI~~g~~~------------~---~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQ 769 (1303)
+|++|++.++. .|++||+.++... . +++..++++.+++.+ .......+|||||
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~ 150 (243)
T TIGR02315 82 GMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLAD-----------KAYQRADQLSGGQ 150 (243)
T ss_pred EEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHh-----------hhcCCcccCCHHH
Confidence 99999999885 6999999875310 1 112333333333322 2334567899999
Q ss_pred HHHHHHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCH
Q 000746 770 KQRVSMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSF 823 (1303)
Q Consensus 770 kQRiaLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~ 823 (1303)
|||++||||++. +.+.+.. .++|+|++||+++.+ ..||++++|++|++++.|++
T Consensus 151 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~ 230 (243)
T TIGR02315 151 QQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAP 230 (243)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCH
Confidence 999999999542 2344433 378999999999987 46999999999999999999
Q ss_pred HHH
Q 000746 824 EEL 826 (1303)
Q Consensus 824 ~~l 826 (1303)
+++
T Consensus 231 ~~~ 233 (243)
T TIGR02315 231 SEL 233 (243)
T ss_pred HHh
Confidence 886
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-27 Score=270.45 Aligned_cols=181 Identities=24% Similarity=0.421 Sum_probs=143.1
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE--------------EcCeE
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV--------------IRGTV 705 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~--------------~~~~i 705 (1303)
.++++|++++|+++.++++|+||+|++||+++|+|+||||||||+++|.|+++|.+|.+.. .++.+
T Consensus 5 ~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~i 84 (283)
T PRK13636 5 ILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESV 84 (283)
T ss_pred eEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhE
Confidence 5899999999974457999999999999999999999999999999999999999874321 12459
Q ss_pred EEEccCc--ccccccHHHHHccCCC---CCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHH
Q 000746 706 AYVPQIS--WIFNATLRKNILFGSE---FDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMA 776 (1303)
Q Consensus 706 ayv~Q~p--~l~~~TireNI~~g~~---~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLA 776 (1303)
+|++|+| .+++.|++||+.++.. ++. ++..++++.+++.+ .......+||||||||++||
T Consensus 85 g~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-----------~~~~~~~~LS~G~~qrl~la 153 (283)
T PRK13636 85 GMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEH-----------LKDKPTHCLSFGQKKRVAIA 153 (283)
T ss_pred EEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChh-----------hhhCCcccCCHHHHHHHHHH
Confidence 9999998 5788999999987532 222 22334444444432 22345678999999999999
Q ss_pred HHHHH-----------------------HHHhHhcC--CCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHhcc
Q 000746 777 RAVFN-----------------------SCIKEELR--GKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSKHG 830 (1303)
Q Consensus 777 RAl~~-----------------------~~i~~~~~--~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~~~ 830 (1303)
||++. +.+.+..+ ++|+|++||+++.+. .||++++|++|++++.|+++++.+..
T Consensus 154 raL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~ 233 (283)
T PRK13636 154 GVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEK 233 (283)
T ss_pred HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCH
Confidence 99642 23444332 799999999999986 69999999999999999999987644
Q ss_pred h
Q 000746 831 R 831 (1303)
Q Consensus 831 ~ 831 (1303)
.
T Consensus 234 ~ 234 (283)
T PRK13636 234 E 234 (283)
T ss_pred H
Confidence 3
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-27 Score=266.57 Aligned_cols=182 Identities=26% Similarity=0.361 Sum_probs=141.2
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCC-----CCceEE-------------
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPL-----KDASVV------------- 700 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~-----~g~~~~------------- 700 (1303)
+.++++|+++.|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|. +|.+..
T Consensus 6 ~~l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (254)
T PRK14273 6 AIIETENLNLFYTD-FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL 84 (254)
T ss_pred ceEEEeeeEEEeCC-ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHH
Confidence 36899999999975 46999999999999999999999999999999999999874 563221
Q ss_pred -EcCeEEEEccCcccccccHHHHHccCCCC----Ch----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHH
Q 000746 701 -IRGTVAYVPQISWIFNATLRKNILFGSEF----DP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQ 771 (1303)
Q Consensus 701 -~~~~iayv~Q~p~l~~~TireNI~~g~~~----~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQ 771 (1303)
.++.|+|++|++.+++.|++|||.++... +. ++..++++.+++.+.+ ++. ...+..+|||||||
T Consensus 85 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~----~~~~~~~LSgG~~q 157 (254)
T PRK14273 85 ELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV---KDK----LNTNALSLSGGQQQ 157 (254)
T ss_pred HHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh---HHH----HhCCcccCCHHHHH
Confidence 13469999999999999999999986421 21 2233344444432211 122 23456789999999
Q ss_pred HHHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHH
Q 000746 772 RVSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELS 827 (1303)
Q Consensus 772 RiaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~ 827 (1303)
|++||||++. +.+.+..+++|+|++||+++.+ ..||+|++|++|++++.|+++++.
T Consensus 158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 158 RLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELF 237 (254)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999642 3344444578999999999986 459999999999999999999886
Q ss_pred h
Q 000746 828 K 828 (1303)
Q Consensus 828 ~ 828 (1303)
+
T Consensus 238 ~ 238 (254)
T PRK14273 238 F 238 (254)
T ss_pred h
Confidence 4
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-27 Score=279.30 Aligned_cols=177 Identities=27% Similarity=0.361 Sum_probs=141.0
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE-----------cCeEEEE
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI-----------RGTVAYV 708 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~-----------~~~iayv 708 (1303)
.++++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|. +.+ ++.|+|+
T Consensus 3 ~l~i~~l~~~~~~-~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~-I~~~g~~i~~~~~~~~~i~~v 80 (369)
T PRK11000 3 SVTLRNVTKAYGD-VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGD-LFIGEKRMNDVPPAERGVGMV 80 (369)
T ss_pred EEEEEEEEEEeCC-eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceE-EEECCEECCCCCHhHCCEEEE
Confidence 4889999999975 46999999999999999999999999999999999999999874 333 2469999
Q ss_pred ccCccccc-ccHHHHHccCCC---CCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHH
Q 000746 709 PQISWIFN-ATLRKNILFGSE---FDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF 780 (1303)
Q Consensus 709 ~Q~p~l~~-~TireNI~~g~~---~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~ 780 (1303)
+|++.+|. .|++|||.++.. .+. ++..++++..++.+.. .....+||||||||++||||+.
T Consensus 81 ~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~-----------~~~~~~LSgGq~QRvaLAraL~ 149 (369)
T PRK11000 81 FQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLL-----------DRKPKALSGGQRQRVAIGRTLV 149 (369)
T ss_pred eCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhh-----------cCChhhCCHHHHHHHHHHHHHh
Confidence 99999985 599999998743 222 2344455555544332 2334679999999999999964
Q ss_pred H-----------------------HHHhHhc--CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHHhc
Q 000746 781 N-----------------------SCIKEEL--RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 781 ~-----------------------~~i~~~~--~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
. +.+++.. .++|+|+|||+++.+ ..||+|++|++|++++.|+++++...
T Consensus 150 ~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~ 224 (369)
T PRK11000 150 AEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (369)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 2 2333333 278999999999876 56999999999999999999998764
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-27 Score=268.48 Aligned_cols=178 Identities=31% Similarity=0.449 Sum_probs=140.1
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-------------EcCeEEE
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-------------IRGTVAY 707 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-------------~~~~iay 707 (1303)
++++|++++|+++.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.+.. .+..++|
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (274)
T PRK13644 2 IRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGI 81 (274)
T ss_pred EEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEE
Confidence 689999999965456999999999999999999999999999999999999999874321 1235999
Q ss_pred EccCcc--cccccHHHHHccCCC---CChh----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHH
Q 000746 708 VPQISW--IFNATLRKNILFGSE---FDPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARA 778 (1303)
Q Consensus 708 v~Q~p~--l~~~TireNI~~g~~---~~~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARA 778 (1303)
++|+|. +++.|++|||.++.. .+.+ +..++++..++.+. .......||||||||++||||
T Consensus 82 v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qrv~lara 150 (274)
T PRK13644 82 VFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKY-----------RHRSPKTLSGGQGQCVALAGI 150 (274)
T ss_pred EEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHH-----------hcCCcccCCHHHHHHHHHHHH
Confidence 999986 567899999988642 2222 23334444444322 233456899999999999999
Q ss_pred HHH-----------------------HHHhHhc-CCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhc
Q 000746 779 VFN-----------------------SCIKEEL-RGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 779 l~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
++. +.+++.. +++|+|++||+++.++.||+|++|++|++++.|+++++...
T Consensus 151 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 151 LTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 642 2333332 48999999999999988999999999999999999887653
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-27 Score=265.06 Aligned_cols=180 Identities=27% Similarity=0.395 Sum_probs=140.0
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCC-----CCceEE--------------E
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPL-----KDASVV--------------I 701 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~-----~g~~~~--------------~ 701 (1303)
++++|++++|++ .++++|+||+|++||+++|+|+||||||||+++|+|+++|. +|.+.. .
T Consensus 2 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~ 80 (247)
T TIGR00972 2 IEIENLNLFYGE-KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVEL 80 (247)
T ss_pred EEEEEEEEEECC-eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHH
Confidence 689999999975 36999999999999999999999999999999999999987 764321 1
Q ss_pred cCeEEEEccCcccccccHHHHHccCCC----CCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHH
Q 000746 702 RGTVAYVPQISWIFNATLRKNILFGSE----FDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRV 773 (1303)
Q Consensus 702 ~~~iayv~Q~p~l~~~TireNI~~g~~----~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRi 773 (1303)
++.++|+||++.+++.|++||+.++.. .+. ++..++++..++.++++ ........+||||||||+
T Consensus 81 ~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~qrv 153 (247)
T TIGR00972 81 RRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQQQRL 153 (247)
T ss_pred HhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHHHHHHH
Confidence 246999999999999999999987532 121 12233333334332111 223456678999999999
Q ss_pred HHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHh
Q 000746 774 SMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 774 aLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
+||||+.. +.+.+..+++|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus 154 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (247)
T TIGR00972 154 CIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFT 232 (247)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999542 34444445689999999999865 699999999999999999988764
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-27 Score=260.68 Aligned_cols=175 Identities=27% Similarity=0.474 Sum_probs=137.2
Q ss_pred EEEEeeEEEeCCC-CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-----------EcCeEEEE
Q 000746 641 VSIKNGNFSWDSK-SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-----------IRGTVAYV 708 (1303)
Q Consensus 641 i~~~~~~f~~~~~-~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-----------~~~~iayv 708 (1303)
++++|+++.|++. .++|+|+||++++||+++|+||||||||||+++|.|+++|++|.+.. .++.++|+
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v 80 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYC 80 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEe
Confidence 4689999999753 47999999999999999999999999999999999999999874321 12459999
Q ss_pred ccCcccc-cccHHHHHccCCC---CCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHH
Q 000746 709 PQISWIF-NATLRKNILFGSE---FDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF 780 (1303)
Q Consensus 709 ~Q~p~l~-~~TireNI~~g~~---~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~ 780 (1303)
+|++.++ +.|++||+.++.. .++ ++.+++++..++.+.. .....+||||||||++||||+.
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la~al~ 149 (220)
T cd03263 81 PQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKA-----------NKRARTLSGGMKRKLSLAIALI 149 (220)
T ss_pred cCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-----------hChhhhCCHHHHHHHHHHHHHh
Confidence 9999988 6799999987431 222 2334445544443222 2334679999999999999953
Q ss_pred H-----------------------HHHhHhcCCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHH
Q 000746 781 N-----------------------SCIKEELRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEEL 826 (1303)
Q Consensus 781 ~-----------------------~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l 826 (1303)
. +.+.+..+++|+|++||+++.+. .||++++|++|++++.|+++++
T Consensus 150 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 150 GGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred cCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 2 33444445689999999999875 5999999999999999988765
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-27 Score=277.46 Aligned_cols=165 Identities=25% Similarity=0.356 Sum_probs=130.5
Q ss_pred CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------E----cCeEEEEccCccccc-
Q 000746 654 SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------I----RGTVAYVPQISWIFN- 716 (1303)
Q Consensus 654 ~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------~----~~~iayv~Q~p~l~~- 716 (1303)
.++++|+||+|++||+++|+||||||||||+++|.|+++|++|.+.. + ++.|+||+|++++|+
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 46899999999999999999999999999999999999999875431 1 457999999999996
Q ss_pred ccHHHHHccCCCC---Ch-h---hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH--------
Q 000746 717 ATLRKNILFGSEF---DP-A---KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN-------- 781 (1303)
Q Consensus 717 ~TireNI~~g~~~---~~-~---~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~-------- 781 (1303)
.||+|||.++.++ +. + +..++++..+|+ ........+||||||||++||||+..
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~-----------~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLE-----------EYEHRYPDELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCc-----------hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 5999999987432 22 2 223333333332 23445667899999999999999542
Q ss_pred ---------------HHHhHhc--CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHHhc
Q 000746 782 ---------------SCIKEEL--RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 782 ---------------~~i~~~~--~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
+.+.+.. .++|+|+|||+++.+ +.||+|++|++|++++.|+++++.++
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~ 220 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN 220 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhC
Confidence 2233322 389999999999975 66999999999999999999998765
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-27 Score=263.98 Aligned_cols=176 Identities=26% Similarity=0.426 Sum_probs=136.4
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE---------------EcCeE
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV---------------IRGTV 705 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~---------------~~~~i 705 (1303)
++++|++++|+++.++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..+
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 80 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQI 80 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhcc
Confidence 468999999975346999999999999999999999999999999999999998874321 12359
Q ss_pred EEEccCccccc-ccHHHHHccCCC------------CCh---hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHH
Q 000746 706 AYVPQISWIFN-ATLRKNILFGSE------------FDP---AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQ 769 (1303)
Q Consensus 706 ayv~Q~p~l~~-~TireNI~~g~~------------~~~---~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQ 769 (1303)
+|+||++.+|. .|++||+.++.. .++ ++..+.++..++. ......+.+|||||
T Consensus 81 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~ 149 (241)
T cd03256 81 GMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLL-----------DKAYQRADQLSGGQ 149 (241)
T ss_pred EEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCCh-----------hhhCCCcccCCHHH
Confidence 99999998875 799999987531 011 1222223333222 22345667899999
Q ss_pred HHHHHHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCH
Q 000746 770 KQRVSMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSF 823 (1303)
Q Consensus 770 kQRiaLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~ 823 (1303)
|||++||||+.. +.+.+.. .++|+|++||+++.+. .||++++|++|++++.|++
T Consensus 150 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~ 229 (241)
T cd03256 150 QQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPP 229 (241)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCH
Confidence 999999999542 2344432 3799999999999987 6999999999999999999
Q ss_pred HHHH
Q 000746 824 EELS 827 (1303)
Q Consensus 824 ~~l~ 827 (1303)
+++.
T Consensus 230 ~~~~ 233 (241)
T cd03256 230 AELT 233 (241)
T ss_pred HHhh
Confidence 8863
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-27 Score=265.59 Aligned_cols=183 Identities=25% Similarity=0.358 Sum_probs=143.0
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCC-----CCCCceEE-------------
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELP-----PLKDASVV------------- 700 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~-----~~~g~~~~------------- 700 (1303)
+.++++|+++.|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|.+..
T Consensus 12 ~~l~~~~l~~~~~~-~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~ 90 (260)
T PRK10744 12 SKIQVRNLNFYYGK-FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIA 90 (260)
T ss_pred ceEEEEEEEEEeCC-eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchH
Confidence 46899999999975 469999999999999999999999999999999999986 46663211
Q ss_pred -EcCeEEEEccCcccccccHHHHHccCCC----CCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHH
Q 000746 701 -IRGTVAYVPQISWIFNATLRKNILFGSE----FDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQ 771 (1303)
Q Consensus 701 -~~~~iayv~Q~p~l~~~TireNI~~g~~----~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQ 771 (1303)
.+++|+|++|++.++..|++||+.++.. .++ ++.+++++..++.+++ .....+...+|||||||
T Consensus 91 ~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~q 163 (260)
T PRK10744 91 LLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEV-------KDKLHQSGYSLSGGQQQ 163 (260)
T ss_pred HHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhh-------HHHHhcCCCCCCHHHHH
Confidence 1346999999999999999999987532 222 2333444444442222 23345677889999999
Q ss_pred HHHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHH
Q 000746 772 RVSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELS 827 (1303)
Q Consensus 772 RiaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~ 827 (1303)
|++||||++. +.+++..+++|+|++||+++.+. .||++++|++|++++.|+.+++.
T Consensus 164 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 164 RLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIF 243 (260)
T ss_pred HHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999542 33444445789999999999875 69999999999999999999886
Q ss_pred hc
Q 000746 828 KH 829 (1303)
Q Consensus 828 ~~ 829 (1303)
..
T Consensus 244 ~~ 245 (260)
T PRK10744 244 TK 245 (260)
T ss_pred hC
Confidence 43
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-27 Score=263.32 Aligned_cols=177 Identities=26% Similarity=0.459 Sum_probs=137.6
Q ss_pred EEEEeeEEEeCCC---CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----E-----------c
Q 000746 641 VSIKNGNFSWDSK---SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----I-----------R 702 (1303)
Q Consensus 641 i~~~~~~f~~~~~---~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----~-----------~ 702 (1303)
++++|++++|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.+.. + +
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 6899999999754 27999999999999999999999999999999999999999874321 1 3
Q ss_pred CeEEEEccCccccc-ccHHHHHccCCC---CChh----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHH
Q 000746 703 GTVAYVPQISWIFN-ATLRKNILFGSE---FDPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVS 774 (1303)
Q Consensus 703 ~~iayv~Q~p~l~~-~TireNI~~g~~---~~~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRia 774 (1303)
+.++|+||++.+|. .|++||+.++.. .+.. +..+.++..++. ........+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLE-----------DKADAYPAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh-----------hhhhcChhhCCHHHHHHHH
Confidence 46999999999986 699999987532 2221 223333333332 2233445789999999999
Q ss_pred HHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHh
Q 000746 775 MARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 775 LARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
||||++. +.+.+.. .++|+|++||+++.+. .||++++|++|++++.|+++++.+
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 9999542 3344433 3789999999999875 599999999999999999887754
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-27 Score=263.02 Aligned_cols=184 Identities=21% Similarity=0.328 Sum_probs=138.0
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-------------EcCeEEE
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-------------IRGTVAY 707 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-------------~~~~iay 707 (1303)
++++|+++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|.+|.+.. .+..++|
T Consensus 1 l~~~~l~~~~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (236)
T cd03219 1 LEVRGLTKRFGG-LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGR 79 (236)
T ss_pred CeeeeeEEEECC-EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEE
Confidence 468999999974 46999999999999999999999999999999999999999874321 0235999
Q ss_pred EccCcccccc-cHHHHHccCCCCC-hhh--------HHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHH
Q 000746 708 VPQISWIFNA-TLRKNILFGSEFD-PAK--------YWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMAR 777 (1303)
Q Consensus 708 v~Q~p~l~~~-TireNI~~g~~~~-~~~--------~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLAR 777 (1303)
++|++.++.+ |++|||.++.... ... ..... .....+.++.+ |.+........+||||||||++|||
T Consensus 80 v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~ 156 (236)
T cd03219 80 TFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREA-RERAEELLERV--GLADLADRPAGELSYGQQRRLEIAR 156 (236)
T ss_pred EecccccccCCCHHHHHHHHHhhccccccccccccccHHHH-HHHHHHHHHHc--CccchhhCChhhCCHHHHHHHHHHH
Confidence 9999999875 9999998764211 000 00000 01122233333 2333445667789999999999999
Q ss_pred HHHH-----------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHh
Q 000746 778 AVFN-----------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 778 Al~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
|+.. +.+.+.. +++|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus 157 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (236)
T cd03219 157 ALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN 232 (236)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhcc
Confidence 9542 2333333 5899999999999975 499999999999999999988754
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-27 Score=257.36 Aligned_cols=165 Identities=28% Similarity=0.489 Sum_probs=130.9
Q ss_pred EEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE----------cCeEEEEccC
Q 000746 642 SIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI----------RGTVAYVPQI 711 (1303)
Q Consensus 642 ~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~----------~~~iayv~Q~ 711 (1303)
+++|++++|++..++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+ .+ ++.++|++|+
T Consensus 1 ~~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~~i~~~~q~ 79 (205)
T cd03226 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSI-LLNGKPIKAKERRKSIGYVMQD 79 (205)
T ss_pred CcccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE-EECCEEhhhHHhhcceEEEecC
Confidence 367899999752479999999999999999999999999999999999999998743 32 2469999999
Q ss_pred c--ccccccHHHHHccCCCC---ChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-----
Q 000746 712 S--WIFNATLRKNILFGSEF---DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN----- 781 (1303)
Q Consensus 712 p--~l~~~TireNI~~g~~~---~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~----- 781 (1303)
| .+++.|++||+.++.+. ++++..++++.+++.+..+. ....||||||||++||||+..
T Consensus 80 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~laral~~~p~ll 148 (205)
T cd03226 80 VDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKER-----------HPLSLSGGQKQRLAIAAALLSGKDLL 148 (205)
T ss_pred hhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCC-----------CchhCCHHHHHHHHHHHHHHhCCCEE
Confidence 8 46788999999986432 23456666776666544333 234799999999999999542
Q ss_pred ------------------HHHhHh-cCCCEEEEEecCCCccc-ccCEEEEEeCCEEE
Q 000746 782 ------------------SCIKEE-LRGKTRILVTNQLHFLP-HVDRIILVSEGMIK 818 (1303)
Q Consensus 782 ------------------~~i~~~-~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~ 818 (1303)
+.+++. .+++|+|++||+++.+. .||++++|++|+++
T Consensus 149 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 149 IFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 234333 25789999999999876 59999999999874
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.2e-27 Score=264.72 Aligned_cols=184 Identities=20% Similarity=0.267 Sum_probs=144.1
Q ss_pred CCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCC-----CCCCceEE------------
Q 000746 638 LPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELP-----PLKDASVV------------ 700 (1303)
Q Consensus 638 ~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~-----~~~g~~~~------------ 700 (1303)
...++++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|.|+++ |++|.+..
T Consensus 18 ~~~l~~~nl~~~~~~-~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 96 (267)
T PRK14237 18 EIALSTKDLHVYYGK-KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINV 96 (267)
T ss_pred CeEEEEeeEEEEECC-eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCCh
Confidence 346999999999964 579999999999999999999999999999999999986 46763211
Q ss_pred --EcCeEEEEccCcccccccHHHHHccCCC----CCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHH
Q 000746 701 --IRGTVAYVPQISWIFNATLRKNILFGSE----FDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQK 770 (1303)
Q Consensus 701 --~~~~iayv~Q~p~l~~~TireNI~~g~~----~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQk 770 (1303)
.+..|+|++|++.+|..|++|||.++.. .++ ++..++++.+++.+++ .+..+....+||||||
T Consensus 97 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LS~G~~ 169 (267)
T PRK14237 97 YEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQV-------KDDLHKSALTLSGGQQ 169 (267)
T ss_pred HHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchh-------hhhhcCCcccCCHHHH
Confidence 1346999999999999999999987532 121 2233444444443322 2334567789999999
Q ss_pred HHHHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHH
Q 000746 771 QRVSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEEL 826 (1303)
Q Consensus 771 QRiaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l 826 (1303)
||++||||++. +.+.+..+++|+|++||+++.+ ..||++++|++|++++.|+++++
T Consensus 170 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14237 170 QRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNI 249 (267)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 99999999642 3344444678999999999987 56999999999999999999988
Q ss_pred Hhc
Q 000746 827 SKH 829 (1303)
Q Consensus 827 ~~~ 829 (1303)
...
T Consensus 250 ~~~ 252 (267)
T PRK14237 250 FTN 252 (267)
T ss_pred hcC
Confidence 653
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-27 Score=275.15 Aligned_cols=178 Identities=25% Similarity=0.411 Sum_probs=139.0
Q ss_pred EEEEeeEEEeCC---CCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE---------------Ec
Q 000746 641 VSIKNGNFSWDS---KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV---------------IR 702 (1303)
Q Consensus 641 i~~~~~~f~~~~---~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~---------------~~ 702 (1303)
++++|++++|+. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.+.. .+
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 689999999972 247999999999999999999999999999999999999999874321 13
Q ss_pred CeEEEEccCccccc-ccHHHHHccCCC---CChhh----HHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHH
Q 000746 703 GTVAYVPQISWIFN-ATLRKNILFGSE---FDPAK----YWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVS 774 (1303)
Q Consensus 703 ~~iayv~Q~p~l~~-~TireNI~~g~~---~~~~~----~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRia 774 (1303)
++|+|++|++.++. .|++||+.++.. .++++ ..+.++..++. ........+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~-----------~~~~~~~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLS-----------DKADRYPAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-----------hhhhCChhhCCHHHHHHHH
Confidence 46999999999885 799999987632 22222 22233333332 2233445689999999999
Q ss_pred HHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHh
Q 000746 775 MARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 775 LARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
||||+.. +.+.+.. .++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999642 2344332 3789999999999875 599999999999999999999875
Q ss_pred c
Q 000746 829 H 829 (1303)
Q Consensus 829 ~ 829 (1303)
.
T Consensus 231 ~ 231 (343)
T PRK11153 231 H 231 (343)
T ss_pred C
Confidence 4
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8e-27 Score=264.41 Aligned_cols=181 Identities=27% Similarity=0.410 Sum_probs=141.4
Q ss_pred CcEEEEeeEEEeCC-CCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------EcCeE
Q 000746 639 PAVSIKNGNFSWDS-KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------IRGTV 705 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~-~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------~~~~i 705 (1303)
..++++|+++.|++ +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. +++.+
T Consensus 6 ~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 6 VMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred eEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 35899999999963 457999999999999999999999999999999999999999874321 23469
Q ss_pred EEEccCcc--cccccHHHHHccCCC---CChhh----HHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHH
Q 000746 706 AYVPQISW--IFNATLRKNILFGSE---FDPAK----YWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMA 776 (1303)
Q Consensus 706 ayv~Q~p~--l~~~TireNI~~g~~---~~~~~----~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLA 776 (1303)
+|++|+|. +++.|++|||.++.. +++++ ..++++..++.+. ......+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~la 154 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDY-----------LDKEPQNLSGGQKQRVAIA 154 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHH-----------hhCCcccCCHHHHHHHHHH
Confidence 99999984 557899999987532 33332 2334444444333 2344578999999999999
Q ss_pred HHHHH-----------------------HHHhHhc-C-CCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhcc
Q 000746 777 RAVFN-----------------------SCIKEEL-R-GKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHG 830 (1303)
Q Consensus 777 RAl~~-----------------------~~i~~~~-~-~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~ 830 (1303)
||++. +.+.+.. + ++|+|++||+++.+..||++++|++|++++.|+.+++.+..
T Consensus 155 ral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 233 (271)
T PRK13632 155 SVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNNK 233 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcCH
Confidence 99642 2333333 2 58999999999998889999999999999999998876543
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-27 Score=258.77 Aligned_cols=169 Identities=29% Similarity=0.406 Sum_probs=130.8
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----------EcCeEEEEcc
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----------IRGTVAYVPQ 710 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----------~~~~iayv~Q 710 (1303)
++++|+++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. .++.++|++|
T Consensus 1 l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q 79 (213)
T cd03259 1 LELKGLSKTYGS-VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQ 79 (213)
T ss_pred CeeeeeEEEeCC-eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcC
Confidence 468999999975 47999999999999999999999999999999999999999874321 1246999999
Q ss_pred Cccccc-ccHHHHHccCCC---CCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-
Q 000746 711 ISWIFN-ATLRKNILFGSE---FDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN- 781 (1303)
Q Consensus 711 ~p~l~~-~TireNI~~g~~---~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~- 781 (1303)
+|.++. .|++||+.++.. .++ ++..+.++.+++.+. ......+||||||||++||||+..
T Consensus 80 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrl~la~al~~~ 148 (213)
T cd03259 80 DYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGL-----------LNRYPHELSGGQQQRVALARALARE 148 (213)
T ss_pred chhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhh-----------hhcChhhCCHHHHHHHHHHHHHhcC
Confidence 998885 699999987532 122 223334444444332 233446899999999999999542
Q ss_pred ----------------------HHHhHhc--CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEec
Q 000746 782 ----------------------SCIKEEL--RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEG 821 (1303)
Q Consensus 782 ----------------------~~i~~~~--~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g 821 (1303)
+.+.+.. .++|+|++||+++.+ ..||+|++|++|++++.|
T Consensus 149 p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 149 PSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 2344432 378999999999986 459999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.8e-27 Score=265.60 Aligned_cols=180 Identities=28% Similarity=0.382 Sum_probs=143.6
Q ss_pred cEEEEeeEEEeCCC-----CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-------------E
Q 000746 640 AVSIKNGNFSWDSK-----SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-------------I 701 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~-----~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-------------~ 701 (1303)
.++++|++++|++. .++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|.+.. .
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 58999999999742 36999999999999999999999999999999999999999874321 1
Q ss_pred cCeEEEEccCcc--cccccHHHHHccCCC---CC----hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHH
Q 000746 702 RGTVAYVPQISW--IFNATLRKNILFGSE---FD----PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQR 772 (1303)
Q Consensus 702 ~~~iayv~Q~p~--l~~~TireNI~~g~~---~~----~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQR 772 (1303)
++.++|++|+|. ++..|+.||+.|+.. .+ +++++++++.++|.+..+. ...+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRH-----------APHLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhC-----------CcccCCHHHHHH
Confidence 346999999984 667799999998632 22 2334555555566544333 336799999999
Q ss_pred HHHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHH
Q 000746 773 VSMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELS 827 (1303)
Q Consensus 773 iaLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~ 827 (1303)
++||||++. +.+.+.. .++|+|++||+++.+..||++++|++|++++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 999999542 3344432 378999999999998889999999999999999999987
Q ss_pred hcc
Q 000746 828 KHG 830 (1303)
Q Consensus 828 ~~~ 830 (1303)
++.
T Consensus 233 ~~~ 235 (280)
T PRK13633 233 KEV 235 (280)
T ss_pred cCh
Confidence 653
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-27 Score=259.74 Aligned_cols=171 Identities=26% Similarity=0.372 Sum_probs=133.8
Q ss_pred EEEEeeEEEeCCC---CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE--------cCeEEEEc
Q 000746 641 VSIKNGNFSWDSK---SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI--------RGTVAYVP 709 (1303)
Q Consensus 641 i~~~~~~f~~~~~---~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~--------~~~iayv~ 709 (1303)
++++|+++.|++. .++|+|+||+|++|++++|+||||||||||+++|+|+++|.+|. +.+ +..++|++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~~~~~~~~i~~v~ 79 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE-VLVDGEPVTGPGPDRGYVF 79 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEECccccCcEEEEe
Confidence 4689999999752 47999999999999999999999999999999999999998874 333 34699999
Q ss_pred cCccccc-ccHHHHHccCCC---CC----hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH
Q 000746 710 QISWIFN-ATLRKNILFGSE---FD----PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN 781 (1303)
Q Consensus 710 Q~p~l~~-~TireNI~~g~~---~~----~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~ 781 (1303)
|+|.++. .|++||+.++.. .+ +++..+.++..++.+.. .....+||||||||++||||+..
T Consensus 80 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrl~la~al~~ 148 (220)
T cd03293 80 QQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFE-----------NAYPHQLSGGMRQRVALARALAV 148 (220)
T ss_pred cccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhh-----------hCCcccCCHHHHHHHHHHHHHHc
Confidence 9999886 799999987532 11 22334445544444332 23346799999999999999642
Q ss_pred -----------------------HHHhHhc--CCCEEEEEecCCCcc-cccCEEEEEe--CCEEEEecCH
Q 000746 782 -----------------------SCIKEEL--RGKTRILVTNQLHFL-PHVDRIILVS--EGMIKEEGSF 823 (1303)
Q Consensus 782 -----------------------~~i~~~~--~~~TvilvtH~~~~l-~~aD~ii~l~--~G~i~~~g~~ 823 (1303)
+.+.+.. .++|+|++||+++.+ ..||++++|+ +|+++++++.
T Consensus 149 ~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 149 DPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 3344432 378999999999976 4699999999 7999998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.6e-27 Score=264.47 Aligned_cols=183 Identities=21% Similarity=0.329 Sum_probs=142.7
Q ss_pred CCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CCCceEE------------
Q 000746 638 LPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP-----LKDASVV------------ 700 (1303)
Q Consensus 638 ~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~-----~~g~~~~------------ 700 (1303)
.+.++++|+++.|++ .++|+|+||+|++|++++|+|+||||||||+++|.|+++| ++|.+..
T Consensus 17 ~~~l~~~nl~~~~~~-~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~ 95 (267)
T PRK14235 17 EIKMRARDVSVFYGE-KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDV 95 (267)
T ss_pred CceEEEEeEEEEECC-EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccch
Confidence 457999999999974 4699999999999999999999999999999999999975 6764321
Q ss_pred --EcCeEEEEccCcccccccHHHHHccCCC---C--C----hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHH
Q 000746 701 --IRGTVAYVPQISWIFNATLRKNILFGSE---F--D----PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQ 769 (1303)
Q Consensus 701 --~~~~iayv~Q~p~l~~~TireNI~~g~~---~--~----~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQ 769 (1303)
.+..++|++|+|.+++.|++||+.++.. . + +++..++++..++.+++. +.....+.+|||||
T Consensus 96 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq 168 (267)
T PRK14235 96 VELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPGTGLSGGQ 168 (267)
T ss_pred HHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCHHH
Confidence 1346999999999998899999987531 1 1 122344444444433221 23345678899999
Q ss_pred HHHHHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHH
Q 000746 770 KQRVSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEE 825 (1303)
Q Consensus 770 kQRiaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~ 825 (1303)
|||++||||++. +.+++..+++|+|++||+++.+ ..||++++|++|++++.|++++
T Consensus 169 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 248 (267)
T PRK14235 169 QQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEK 248 (267)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 999999999642 3444444578999999999987 4589999999999999999988
Q ss_pred HHh
Q 000746 826 LSK 828 (1303)
Q Consensus 826 l~~ 828 (1303)
+..
T Consensus 249 ~~~ 251 (267)
T PRK14235 249 MFT 251 (267)
T ss_pred HHh
Confidence 764
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-27 Score=260.60 Aligned_cols=166 Identities=27% Similarity=0.361 Sum_probs=128.8
Q ss_pred EEEEeeEEEeCCC---CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----------------E
Q 000746 641 VSIKNGNFSWDSK---SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----------------I 701 (1303)
Q Consensus 641 i~~~~~~f~~~~~---~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----------------~ 701 (1303)
++++|++++|++. .++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 4689999999752 47999999999999999999999999999999999999998875321 1
Q ss_pred cCeEEEEccCcccccc-cHHHHHccCCCC---Ch----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHH
Q 000746 702 RGTVAYVPQISWIFNA-TLRKNILFGSEF---DP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRV 773 (1303)
Q Consensus 702 ~~~iayv~Q~p~l~~~-TireNI~~g~~~---~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRi 773 (1303)
+..++|++|++.++.. |++||+.++..+ +. +++.++++..++ +........+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGL-----------GDRLNHYPSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCC-----------chhhhcChhhcCHHHHHHH
Confidence 2469999999999875 999999986432 11 223333333333 2233445578999999999
Q ss_pred HHHHHHH-----------------------HHHHhHhc--CCCEEEEEecCCCcccccCEEEEEeCCEE
Q 000746 774 SMARAVF-----------------------NSCIKEEL--RGKTRILVTNQLHFLPHVDRIILVSEGMI 817 (1303)
Q Consensus 774 aLARAl~-----------------------~~~i~~~~--~~~TvilvtH~~~~l~~aD~ii~l~~G~i 817 (1303)
+||||++ .+.+.+.. .++|+|++||+++.+..||++++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 9999953 23344443 37899999999998889999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-25 Score=281.69 Aligned_cols=181 Identities=20% Similarity=0.213 Sum_probs=118.7
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcCeEEEEccCccccccc
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISWIFNAT 718 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~~iayv~Q~p~l~~~T 718 (1303)
..|+++|++++|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+.. .| +.-.++|+|++|++.-.+.|
T Consensus 176 ~~I~i~nls~~y~~-~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~--~g--~p~~g~I~~~~Q~~~g~~~t 250 (718)
T PLN03073 176 KDIHMENFSISVGG-RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAI--DG--IPKNCQILHVEQEVVGDDTT 250 (718)
T ss_pred eeEEEceEEEEeCC-CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CC--CCCCCEEEEEeccCCCCCCC
Confidence 46999999999975 469999999999999999999999999999999999741 12 11235789999986433335
Q ss_pred HHHHHccCC-----------------------------------CCCh----hhHHHHHHHHhh----------HHHhhc
Q 000746 719 LRKNILFGS-----------------------------------EFDP----AKYWKTVDVSAL----------QHDLDL 749 (1303)
Q Consensus 719 ireNI~~g~-----------------------------------~~~~----~~~~~vl~~~~l----------~~~i~~ 749 (1303)
+.+.+.-.. ..++ +++.++.+..++ .+.+..
T Consensus 251 ~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~ 330 (718)
T PLN03073 251 ALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAG 330 (718)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHH
Confidence 433321100 0011 122222222111 011111
Q ss_pred CCCCCC-ccccCCCCCCchHHHHHHHHHHHHHHH-------------------HHhHhc--CCCEEEEEecCCCcccc-c
Q 000746 750 LPDRDL-TEIGERGVNISGGQKQRVSMARAVFNS-------------------CIKEEL--RGKTRILVTNQLHFLPH-V 806 (1303)
Q Consensus 750 lp~g~~-T~ige~G~~LSGGQkQRiaLARAl~~~-------------------~i~~~~--~~~TvilvtH~~~~l~~-a 806 (1303)
+ |.. ......-.+||||||||++||||++.+ .+.+.+ -++|+|+|||+.+++.. |
T Consensus 331 l--gl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~~l~~~~ 408 (718)
T PLN03073 331 L--SFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLNTVV 408 (718)
T ss_pred C--CCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhC
Confidence 1 111 111223457999999999999996531 111222 26899999999999865 9
Q ss_pred CEEEEEeCCEEE-EecCHHHH
Q 000746 807 DRIILVSEGMIK-EEGSFEEL 826 (1303)
Q Consensus 807 D~ii~l~~G~i~-~~g~~~~l 826 (1303)
|+|++|++|++. ..|++++.
T Consensus 409 d~i~~l~~g~i~~~~g~~~~~ 429 (718)
T PLN03073 409 TDILHLHGQKLVTYKGDYDTF 429 (718)
T ss_pred CEEEEEECCEEEEeCCCHHHH
Confidence 999999999996 56777654
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=263.93 Aligned_cols=179 Identities=28% Similarity=0.421 Sum_probs=141.5
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE-------------cCeEE
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI-------------RGTVA 706 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~-------------~~~ia 706 (1303)
.++++|++++|+++.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.+ .+ ++.++
T Consensus 3 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 3 LIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSV-LIRGEPITKENIREVRKFVG 81 (277)
T ss_pred eEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE-EECCEECCcCCHHHHHhheE
Confidence 47899999999654569999999999999999999999999999999999999998743 32 13599
Q ss_pred EEccCc--ccccccHHHHHccCC---CCChh----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHH
Q 000746 707 YVPQIS--WIFNATLRKNILFGS---EFDPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMAR 777 (1303)
Q Consensus 707 yv~Q~p--~l~~~TireNI~~g~---~~~~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLAR 777 (1303)
|++|+| .+++.|++||+.++. ..+++ ++.+.++.+++.+... .....||||||||++|||
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~Gq~qrl~lar 150 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRD-----------RVPHHLSGGEKKRVAIAG 150 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhc-----------CCcccCCHHHHHHHHHHH
Confidence 999998 367889999998753 23332 2344455555543332 234579999999999999
Q ss_pred HHHH-----------------------HHHhHhc--CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHHhcc
Q 000746 778 AVFN-----------------------SCIKEEL--RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELSKHG 830 (1303)
Q Consensus 778 Al~~-----------------------~~i~~~~--~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~~~~ 830 (1303)
|+.. +.+.+.. .++|+|++||+++.+ ..||+|++|++|++++.|+++++.+..
T Consensus 151 aL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~ 229 (277)
T PRK13652 151 VIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQP 229 (277)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcCH
Confidence 9642 2333332 278999999999997 579999999999999999999987644
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7e-27 Score=261.45 Aligned_cols=174 Identities=25% Similarity=0.374 Sum_probs=138.4
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-------EcCeEEEEccC
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-------IRGTVAYVPQI 711 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-------~~~~iayv~Q~ 711 (1303)
..++++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+.. .+..++|++|+
T Consensus 11 ~~l~i~~l~~~~~~-~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~ 89 (257)
T PRK11247 11 TPLLLNAVSKRYGE-RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQD 89 (257)
T ss_pred CcEEEEEEEEEECC-cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecC
Confidence 46999999999975 47999999999999999999999999999999999999999875431 13469999999
Q ss_pred ccccc-ccHHHHHccCCC-CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH--------
Q 000746 712 SWIFN-ATLRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN-------- 781 (1303)
Q Consensus 712 p~l~~-~TireNI~~g~~-~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~-------- 781 (1303)
+.++. .|++||+.++.. ..+++..+.++..++.+. ......+||||||||++||||++.
T Consensus 90 ~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGqkqrl~laraL~~~p~lllLD 158 (257)
T PRK11247 90 ARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADR-----------ANEWPAALSGGQKQRVALARALIHRPGLLLLD 158 (257)
T ss_pred ccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhH-----------hcCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99886 699999987632 123344555555554332 234557899999999999999642
Q ss_pred ---------------HHHhHhc--CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHH
Q 000746 782 ---------------SCIKEEL--RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFE 824 (1303)
Q Consensus 782 ---------------~~i~~~~--~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~ 824 (1303)
+.+.+.. .++|+|++||+++.+ ..||+|++|++|+++++|+.+
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 159 EPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 2344432 378999999999986 469999999999999988754
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.5e-27 Score=259.21 Aligned_cols=180 Identities=18% Similarity=0.353 Sum_probs=139.3
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc------------CeEEEE
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR------------GTVAYV 708 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~------------~~iayv 708 (1303)
++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.+ .+. ..++|+
T Consensus 2 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i-~~~g~~i~~~~~~~~~~i~~~ 79 (236)
T TIGR03864 2 LEVAGLSFAYGA-RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQI-SVAGHDLRRAPRAALARLGVV 79 (236)
T ss_pred EEEEeeEEEECC-EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEE-EECCEEcccCChhhhhhEEEe
Confidence 678999999974 469999999999999999999999999999999999999998743 221 369999
Q ss_pred ccCccc-ccccHHHHHccCCC---CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH---
Q 000746 709 PQISWI-FNATLRKNILFGSE---FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN--- 781 (1303)
Q Consensus 709 ~Q~p~l-~~~TireNI~~g~~---~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~--- 781 (1303)
+|++.+ ++.|++||+.++.. .++++..+. ..+.++.+ |.+........+||||||||++||||++.
T Consensus 80 ~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~~p~ 152 (236)
T TIGR03864 80 FQQPTLDLDLSVRQNLRYHAALHGLSRAEARER-----IAALLARL--GLAERADDKVRELNGGHRRRVEIARALLHRPA 152 (236)
T ss_pred CCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 999987 47899999987532 222211111 11222222 23333456667899999999999999542
Q ss_pred --------------------HHHhHhc--CCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhc
Q 000746 782 --------------------SCIKEEL--RGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 782 --------------------~~i~~~~--~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
+.+.+.. +++|+|++||+++.+..||++++|++|++++.|+++++.++
T Consensus 153 llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 153 LLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred EEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 2344443 47999999999999888999999999999999999887654
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.3e-27 Score=265.78 Aligned_cols=184 Identities=19% Similarity=0.257 Sum_probs=140.4
Q ss_pred CCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCC-----CCCCceEE------------
Q 000746 638 LPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELP-----PLKDASVV------------ 700 (1303)
Q Consensus 638 ~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~-----~~~g~~~~------------ 700 (1303)
.+.++++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|.+..
T Consensus 19 ~~~l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 19 EHILEVKDLSIYYGE-KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred CceEEEEEEEEEeCC-ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 346999999999974 469999999999999999999999999999999999864 56774321
Q ss_pred --EcCeEEEEccCcccccccHHHHHccCCCCC----h----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHH
Q 000746 701 --IRGTVAYVPQISWIFNATLRKNILFGSEFD----P----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQK 770 (1303)
Q Consensus 701 --~~~~iayv~Q~p~l~~~TireNI~~g~~~~----~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQk 770 (1303)
.++.++|++|++.+|++|++||+.++.... + ++..++++.+++.+ +..........+||||||
T Consensus 98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LSgGq~ 170 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWD-------EVKDRLHSSALSLSGGQQ 170 (268)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCc-------chHHHHhcCcccCCHHHH
Confidence 134699999999999999999998753211 1 11222233322221 111234566788999999
Q ss_pred HHHHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHH
Q 000746 771 QRVSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEEL 826 (1303)
Q Consensus 771 QRiaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l 826 (1303)
||++||||++. +.+.+..+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 250 (268)
T PRK14248 171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQI 250 (268)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999542 33444445789999999999764 6999999999999999999887
Q ss_pred Hhc
Q 000746 827 SKH 829 (1303)
Q Consensus 827 ~~~ 829 (1303)
..+
T Consensus 251 ~~~ 253 (268)
T PRK14248 251 FTS 253 (268)
T ss_pred HhC
Confidence 653
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.3e-27 Score=275.64 Aligned_cols=181 Identities=25% Similarity=0.391 Sum_probs=141.3
Q ss_pred CCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----------EcCeEEE
Q 000746 638 LPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----------IRGTVAY 707 (1303)
Q Consensus 638 ~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----------~~~~iay 707 (1303)
...++++|+++.|++ .++|+|+||++++||+++|+||||||||||+++|.|+.+|++|.+.. .++.|+|
T Consensus 17 ~~~l~l~~v~~~~~~-~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 95 (377)
T PRK11607 17 TPLLEIRNLTKSFDG-QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINM 95 (377)
T ss_pred CceEEEEeEEEEECC-EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 346999999999964 46899999999999999999999999999999999999999874321 1346999
Q ss_pred EccCccccc-ccHHHHHccCCC---CChh----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHH
Q 000746 708 VPQISWIFN-ATLRKNILFGSE---FDPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAV 779 (1303)
Q Consensus 708 v~Q~p~l~~-~TireNI~~g~~---~~~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl 779 (1303)
|+|++.+|. .|+.|||.|+.. .+.+ +..+.++..++.+. ......+|||||||||+||||+
T Consensus 96 vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~-----------~~~~~~~LSgGq~QRVaLARAL 164 (377)
T PRK11607 96 MFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEF-----------AKRKPHQLSGGQRQRVALARSL 164 (377)
T ss_pred EeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHHHHHHHHHH
Confidence 999999995 599999998742 2222 22333333333322 2234467999999999999996
Q ss_pred HH-----------------------HHHhHhc--CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHHhcc
Q 000746 780 FN-----------------------SCIKEEL--RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELSKHG 830 (1303)
Q Consensus 780 ~~-----------------------~~i~~~~--~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~~~~ 830 (1303)
.. +.+.+.. .+.|+|+|||+.+.+ ..||+|++|++|++++.|+++++..+.
T Consensus 165 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p 241 (377)
T PRK11607 165 AKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHP 241 (377)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCC
Confidence 42 1223332 379999999999974 679999999999999999999998653
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.5e-27 Score=262.64 Aligned_cols=183 Identities=26% Similarity=0.381 Sum_probs=141.4
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCC-----CCceEE-------------
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPL-----KDASVV------------- 700 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~-----~g~~~~------------- 700 (1303)
+.++++|+++.|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|. +|.+..
T Consensus 3 ~~l~~~~l~~~~~~-~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 81 (251)
T PRK14249 3 PKIKIRGVNFFYHK-HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVV 81 (251)
T ss_pred ceEEEEEEEEEECC-eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChH
Confidence 35899999999974 46999999999999999999999999999999999999987 353211
Q ss_pred -EcCeEEEEccCcccccccHHHHHccCCCC----ChhhH----HHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHH
Q 000746 701 -IRGTVAYVPQISWIFNATLRKNILFGSEF----DPAKY----WKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQ 771 (1303)
Q Consensus 701 -~~~~iayv~Q~p~l~~~TireNI~~g~~~----~~~~~----~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQ 771 (1303)
.++.++|++|+|.+++.|++||+.++..+ .+++. .++++..++.+ +..+.....+.+|||||||
T Consensus 82 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~Gq~q 154 (251)
T PRK14249 82 NLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWD-------EVKDNLHKSGLALSGGQQQ 154 (251)
T ss_pred HhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCch-------hhhhHhhCCcccCCHHHHH
Confidence 13569999999999999999999976421 11222 22222223222 1223355677899999999
Q ss_pred HHHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCcccc-cCEEEEEeCCEEEEecCHHHHH
Q 000746 772 RVSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFLPH-VDRIILVSEGMIKEEGSFEELS 827 (1303)
Q Consensus 772 RiaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l~~-aD~ii~l~~G~i~~~g~~~~l~ 827 (1303)
|++||||++. +.+.+..+++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 155 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14249 155 RLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence 9999999542 344444457999999999998765 7999999999999999998876
Q ss_pred hc
Q 000746 828 KH 829 (1303)
Q Consensus 828 ~~ 829 (1303)
..
T Consensus 235 ~~ 236 (251)
T PRK14249 235 SR 236 (251)
T ss_pred hC
Confidence 43
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.9e-27 Score=258.32 Aligned_cols=173 Identities=21% Similarity=0.318 Sum_probs=135.1
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE------------cCeEEEE
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI------------RGTVAYV 708 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~------------~~~iayv 708 (1303)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+ .+ +..++|+
T Consensus 1 i~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~~~~~~~~~~~~i~~~ 78 (220)
T cd03265 1 IEVENLVKKYGD-FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRA-TVAGHDVVREPREVRRRIGIV 78 (220)
T ss_pred CEEEEEEEEECC-EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEecCcChHHHhhcEEEe
Confidence 478999999975 469999999999999999999999999999999999999998743 32 2369999
Q ss_pred ccCccccc-ccHHHHHccCCC---CC----hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHH
Q 000746 709 PQISWIFN-ATLRKNILFGSE---FD----PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF 780 (1303)
Q Consensus 709 ~Q~p~l~~-~TireNI~~g~~---~~----~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~ 780 (1303)
+|++.++. .|++||+.++.. .+ +++..+.++..++.+..+ ....+||||||||++||||++
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qr~~la~al~ 147 (220)
T cd03265 79 FQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAAD-----------RLVKTYSGGMRRRLEIARSLV 147 (220)
T ss_pred cCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhh-----------CChhhCCHHHHHHHHHHHHHh
Confidence 99998886 599999987421 22 223444555555543222 234579999999999999954
Q ss_pred H-----------------------HHHhHhc-C-CCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHH
Q 000746 781 N-----------------------SCIKEEL-R-GKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEEL 826 (1303)
Q Consensus 781 ~-----------------------~~i~~~~-~-~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l 826 (1303)
. +.+.+.. + ++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 148 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 148 HRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred cCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 2 2333332 2 789999999999875 5999999999999999987764
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.5e-27 Score=261.75 Aligned_cols=182 Identities=20% Similarity=0.327 Sum_probs=139.1
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCC--C---CCCceEE--------------
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELP--P---LKDASVV-------------- 700 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~--~---~~g~~~~-------------- 700 (1303)
.++++|++++|++ .++++|+||++++||+++|+||||||||||+++|.|+.+ | ++|.+..
T Consensus 5 ~l~~~~l~~~~~~-~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 83 (252)
T PRK14239 5 ILQVSDLSVYYNK-KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVD 83 (252)
T ss_pred eEEEEeeEEEECC-eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHh
Confidence 5899999999974 469999999999999999999999999999999999853 5 3663221
Q ss_pred EcCeEEEEccCcccccccHHHHHccCCC---C-Chh----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHH
Q 000746 701 IRGTVAYVPQISWIFNATLRKNILFGSE---F-DPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQR 772 (1303)
Q Consensus 701 ~~~~iayv~Q~p~l~~~TireNI~~g~~---~-~~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQR 772 (1303)
.++.++|++|++.+|+.|++||+.++.. . +++ +..++++.+++.+.+ .+.......+||||||||
T Consensus 84 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~qr 156 (252)
T PRK14239 84 LRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEV-------KDRLHDSALGLSGGQQQR 156 (252)
T ss_pred hhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhH-------HHHHhcCcccCCHHHHHH
Confidence 1346999999999999999999987531 1 111 222233333332211 123456678899999999
Q ss_pred HHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHHh
Q 000746 773 VSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 773 iaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
++||||+.. +.+.+..+++|+|++||+++.+ ..||+|++|++|++++.|+++++.+
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 236 (252)
T PRK14239 157 VCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFM 236 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999542 3344444578999999999876 4699999999999999999998865
Q ss_pred c
Q 000746 829 H 829 (1303)
Q Consensus 829 ~ 829 (1303)
.
T Consensus 237 ~ 237 (252)
T PRK14239 237 N 237 (252)
T ss_pred C
Confidence 3
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-26 Score=261.72 Aligned_cols=183 Identities=23% Similarity=0.343 Sum_probs=140.7
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCC--C---CCCceEE-------------
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELP--P---LKDASVV------------- 700 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~--~---~~g~~~~------------- 700 (1303)
+.++++|+++.|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|.+..
T Consensus 11 ~~l~i~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 89 (259)
T PRK14274 11 EVYQINGMNLWYGQ-HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLV 89 (259)
T ss_pred ceEEEeeEEEEECC-eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHH
Confidence 35899999999975 469999999999999999999999999999999999987 3 4663311
Q ss_pred -EcCeEEEEccCcccccccHHHHHccCCCC----Chhh----HHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHH
Q 000746 701 -IRGTVAYVPQISWIFNATLRKNILFGSEF----DPAK----YWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQ 771 (1303)
Q Consensus 701 -~~~~iayv~Q~p~l~~~TireNI~~g~~~----~~~~----~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQ 771 (1303)
.++.++|++|++.+++.|++||+.++... ++++ ..++++..++.+.+ .+.......+|||||||
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~l~~~~~~LS~Gq~q 162 (259)
T PRK14274 90 ELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEV-------KDRLHTQALSLSGGQQQ 162 (259)
T ss_pred HHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------hhhhhCCcccCCHHHHH
Confidence 12469999999999999999999876321 2222 22233333332221 12345567789999999
Q ss_pred HHHHHHHHH-----------------------HHHHhHhcCCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHH
Q 000746 772 RVSMARAVF-----------------------NSCIKEELRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELS 827 (1303)
Q Consensus 772 RiaLARAl~-----------------------~~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~ 827 (1303)
|++||||++ .+.+.+..+++|+|++||+++.+. .||++++|++|+++++|+++++.
T Consensus 163 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 163 RLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMF 242 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999954 234455445789999999999865 69999999999999999999876
Q ss_pred hc
Q 000746 828 KH 829 (1303)
Q Consensus 828 ~~ 829 (1303)
++
T Consensus 243 ~~ 244 (259)
T PRK14274 243 SN 244 (259)
T ss_pred hC
Confidence 43
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.2e-27 Score=265.45 Aligned_cols=183 Identities=23% Similarity=0.329 Sum_probs=142.5
Q ss_pred CCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CCCceEE------------
Q 000746 638 LPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP-----LKDASVV------------ 700 (1303)
Q Consensus 638 ~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~-----~~g~~~~------------ 700 (1303)
.+.++++|+++.|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|.+..
T Consensus 23 ~~~l~~~nl~~~~~~-~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~ 101 (272)
T PRK14236 23 QTALEVRNLNLFYGD-KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDV 101 (272)
T ss_pred CcEEEEEEEEEEECC-eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCH
Confidence 346999999999964 4799999999999999999999999999999999999874 6764321
Q ss_pred --EcCeEEEEccCcccccccHHHHHccCCCC----Ch----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHH
Q 000746 701 --IRGTVAYVPQISWIFNATLRKNILFGSEF----DP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQK 770 (1303)
Q Consensus 701 --~~~~iayv~Q~p~l~~~TireNI~~g~~~----~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQk 770 (1303)
.+..++|++|++.+|+.|++||+.++... .+ ++..++++..++.+++ .+..+..+.+||||||
T Consensus 102 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~ 174 (272)
T PRK14236 102 AELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEV-------KDRLHENAFGLSGGQQ 174 (272)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhH-------HHHhhCCcccCCHHHH
Confidence 13579999999999988999999875321 11 1233333333333222 2345667789999999
Q ss_pred HHHHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHH
Q 000746 771 QRVSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEEL 826 (1303)
Q Consensus 771 QRiaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l 826 (1303)
||++||||++. +.+.+..+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 175 qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 254 (272)
T PRK14236 175 QRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTL 254 (272)
T ss_pred HHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHH
Confidence 99999999542 33444445789999999999864 6999999999999999999887
Q ss_pred Hh
Q 000746 827 SK 828 (1303)
Q Consensus 827 ~~ 828 (1303)
.+
T Consensus 255 ~~ 256 (272)
T PRK14236 255 FT 256 (272)
T ss_pred hc
Confidence 64
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.2e-27 Score=273.99 Aligned_cols=178 Identities=26% Similarity=0.462 Sum_probs=142.1
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------EcCeEEE
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------IRGTVAY 707 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------~~~~iay 707 (1303)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|.|+++|.+|.+.. .+++|+|
T Consensus 3 ~L~~~nls~~y~~-~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~ 81 (402)
T PRK09536 3 MIDVSDLSVEFGD-TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVAS 81 (402)
T ss_pred eEEEeeEEEEECC-EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEE
Confidence 4889999999975 47999999999999999999999999999999999999999874321 1346999
Q ss_pred EccCccc-ccccHHHHHccCCC-----C------ChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHH
Q 000746 708 VPQISWI-FNATLRKNILFGSE-----F------DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSM 775 (1303)
Q Consensus 708 v~Q~p~l-~~~TireNI~~g~~-----~------~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaL 775 (1303)
++|++.+ ++.|++||+.++.. + ++++.+++++..++.+.. .....+||||||||++|
T Consensus 82 v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~-----------~~~~~~LSgGerQRv~I 150 (402)
T PRK09536 82 VPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFA-----------DRPVTSLSGGERQRVLL 150 (402)
T ss_pred EccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHHH
Confidence 9999987 58899999998742 1 122344455555543322 22346799999999999
Q ss_pred HHHHHH-----------------------HHHhHhc-CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHHhc
Q 000746 776 ARAVFN-----------------------SCIKEEL-RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 776 ARAl~~-----------------------~~i~~~~-~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
|||+.+ +.+++.. +++|+|++||+++.+ +.||++++|++|++++.|+++++...
T Consensus 151 ArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~ 229 (402)
T PRK09536 151 ARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTA 229 (402)
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCc
Confidence 999643 2333332 478999999999997 56999999999999999999998764
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-27 Score=266.74 Aligned_cols=176 Identities=23% Similarity=0.313 Sum_probs=136.3
Q ss_pred EEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----E------------cCeE
Q 000746 642 SIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----I------------RGTV 705 (1303)
Q Consensus 642 ~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----~------------~~~i 705 (1303)
.++|+++.|++ .++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. + +.++
T Consensus 26 ~~~~~~~~~~~-~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i 104 (269)
T cd03294 26 SKEEILKKTGQ-TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKI 104 (269)
T ss_pred hhhhhhhhcCC-ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcE
Confidence 35577777754 36899999999999999999999999999999999999998874321 0 2469
Q ss_pred EEEccCcccc-cccHHHHHccCCC---CC----hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHH
Q 000746 706 AYVPQISWIF-NATLRKNILFGSE---FD----PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMAR 777 (1303)
Q Consensus 706 ayv~Q~p~l~-~~TireNI~~g~~---~~----~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLAR 777 (1303)
+|++|++.++ +.|++||+.++.. ++ +++..++++..++.+.+.. ...+||||||||++|||
T Consensus 105 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~Gq~qrv~lAr 173 (269)
T cd03294 105 SMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHK-----------YPDELSGGMQQRVGLAR 173 (269)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhC-----------CcccCCHHHHHHHHHHH
Confidence 9999999988 5699999987531 22 2334455555555443333 33579999999999999
Q ss_pred HHHH-----------------------HHHhHhc--CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHHhc
Q 000746 778 AVFN-----------------------SCIKEEL--RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 778 Al~~-----------------------~~i~~~~--~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
|++. +.+.+.. .++|+|++||+++.+ ..||++++|++|++++.|+++++.+.
T Consensus 174 al~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 174 ALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 9642 2344432 379999999999986 46999999999999999999988643
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.2e-27 Score=262.16 Aligned_cols=183 Identities=23% Similarity=0.351 Sum_probs=140.6
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcC---CCC--CCCceEE-------------
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGE---LPP--LKDASVV------------- 700 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~---~~~--~~g~~~~------------- 700 (1303)
+.++++|+++.|++ .++|+|+||++++||+++|+|+||||||||+++|.|+ .+| ++|.+..
T Consensus 2 ~~l~~~~~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14245 2 VKIDARDVNFWYGD-FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVD 80 (250)
T ss_pred cEEEEEEEEEEECC-EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHH
Confidence 35899999999975 4699999999999999999999999999999999996 454 3563211
Q ss_pred -EcCeEEEEccCcccccccHHHHHccCCC---C-Ch----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHH
Q 000746 701 -IRGTVAYVPQISWIFNATLRKNILFGSE---F-DP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQ 771 (1303)
Q Consensus 701 -~~~~iayv~Q~p~l~~~TireNI~~g~~---~-~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQ 771 (1303)
.++.++|+||++.+++.|++||+.++.. . ++ ++..++++.+++.+++ .+.....+.+|||||||
T Consensus 81 ~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~q 153 (250)
T PRK14245 81 ELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEV-------KDKLKESAFALSGGQQQ 153 (250)
T ss_pred HHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcch-------hhhhhCCcccCCHHHHH
Confidence 1236999999999998999999987532 1 11 2233444444443222 23345667889999999
Q ss_pred HHHHHHHHH-----------------------HHHHhHhcCCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHH
Q 000746 772 RVSMARAVF-----------------------NSCIKEELRGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELS 827 (1303)
Q Consensus 772 RiaLARAl~-----------------------~~~i~~~~~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~ 827 (1303)
|++||||+. .+.+++..+++|+|++||+++.+ ..||++++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 154 RLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHh
Confidence 999999954 23444444679999999999987 569999999999999999999886
Q ss_pred hc
Q 000746 828 KH 829 (1303)
Q Consensus 828 ~~ 829 (1303)
++
T Consensus 234 ~~ 235 (250)
T PRK14245 234 TN 235 (250)
T ss_pred cC
Confidence 53
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.5e-27 Score=257.97 Aligned_cols=166 Identities=23% Similarity=0.412 Sum_probs=129.0
Q ss_pred EEEEeeEEEeCCC-CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE---------------EcCe
Q 000746 641 VSIKNGNFSWDSK-SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV---------------IRGT 704 (1303)
Q Consensus 641 i~~~~~~f~~~~~-~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~---------------~~~~ 704 (1303)
++++|++++|++. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. .++.
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 6899999999653 36999999999999999999999999999999999999998874321 1236
Q ss_pred EEEEccCccccc-ccHHHHHccCCC---CC----hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHH
Q 000746 705 VAYVPQISWIFN-ATLRKNILFGSE---FD----PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMA 776 (1303)
Q Consensus 705 iayv~Q~p~l~~-~TireNI~~g~~---~~----~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLA 776 (1303)
++|++|+|.++. .|++||+.++.. .+ +++..++++..++.+..+ ....+||||||||++||
T Consensus 82 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~la 150 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAH-----------ALPMQLSGGEQQRVAIA 150 (216)
T ss_pred ceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHHHHHHHH
Confidence 999999999885 699999987521 11 234455555555543332 23357999999999999
Q ss_pred HHHHH-----------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEE
Q 000746 777 RAVFN-----------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMI 817 (1303)
Q Consensus 777 RAl~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i 817 (1303)
||+.. +.+.+.. +++|+|+|||+++.+. .||++++|++|++
T Consensus 151 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 151 RAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99542 2333332 4789999999999886 5999999999975
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-26 Score=246.13 Aligned_cols=142 Identities=33% Similarity=0.638 Sum_probs=123.6
Q ss_pred EEEEeeEEEeCCC-CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE------------cCeEEE
Q 000746 641 VSIKNGNFSWDSK-SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI------------RGTVAY 707 (1303)
Q Consensus 641 i~~~~~~f~~~~~-~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~------------~~~iay 707 (1303)
++++|++++|++. .++++|+||++++||+++|+||||||||||+++|+|+++|.+|. +.+ +..++|
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGE-ITLDGVPVSDLEKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCE-EEECCEEHHHHHHHHHhhEEE
Confidence 4789999999764 36999999999999999999999999999999999999999874 333 245999
Q ss_pred EccCcccccccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH------
Q 000746 708 VPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN------ 781 (1303)
Q Consensus 708 v~Q~p~l~~~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~------ 781 (1303)
++|+|++++.|++||+ ..+||||||||++||||++.
T Consensus 80 ~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~p~~ll 121 (178)
T cd03247 80 LNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAPIVL 121 (178)
T ss_pred EccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999998 56799999999999999542
Q ss_pred -----------------HHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEec
Q 000746 782 -----------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEG 821 (1303)
Q Consensus 782 -----------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g 821 (1303)
+.+.+..+++|+|++||+++.++.||++++|++|++++.|
T Consensus 122 lDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 122 LDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 3344444689999999999999999999999999998764
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.1e-27 Score=263.53 Aligned_cols=181 Identities=27% Similarity=0.367 Sum_probs=138.6
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCC-----CCCCceEE--------------E
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELP-----PLKDASVV--------------I 701 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~-----~~~g~~~~--------------~ 701 (1303)
-+++|+++.|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+.+ |.+|.+.. .
T Consensus 6 ~~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 84 (251)
T PRK14244 6 ASVKNLNLWYGS-KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLL 84 (251)
T ss_pred EEeeeEEEEECC-eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHH
Confidence 468999999964 479999999999999999999999999999999999986 35664321 1
Q ss_pred cCeEEEEccCcccccccHHHHHccCCCC-----Chh----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHH
Q 000746 702 RGTVAYVPQISWIFNATLRKNILFGSEF-----DPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQR 772 (1303)
Q Consensus 702 ~~~iayv~Q~p~l~~~TireNI~~g~~~-----~~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQR 772 (1303)
++.++|++|++.++++|++||+.++... +.+ +..++++..++.+++ .+.++..+.+||||||||
T Consensus 85 ~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~qr 157 (251)
T PRK14244 85 RAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEEL-------GDRLKDSAFELSGGQQQR 157 (251)
T ss_pred hhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchh-------hhHhhcChhhCCHHHHHH
Confidence 3469999999999999999999875211 111 122233333332211 123455678899999999
Q ss_pred HHHHHHHH-----------------------HHHHhHhcCCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHh
Q 000746 773 VSMARAVF-----------------------NSCIKEELRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 773 iaLARAl~-----------------------~~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
++||||++ .+.+.+..+++|+|++||+++.+. .||++++|++|++++.|+++++.+
T Consensus 158 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (251)
T PRK14244 158 LCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFK 237 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHhc
Confidence 99999954 234444446899999999999875 599999999999999999988765
Q ss_pred c
Q 000746 829 H 829 (1303)
Q Consensus 829 ~ 829 (1303)
.
T Consensus 238 ~ 238 (251)
T PRK14244 238 N 238 (251)
T ss_pred C
Confidence 3
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=99.94 E-value=7e-27 Score=260.90 Aligned_cols=183 Identities=25% Similarity=0.369 Sum_probs=136.6
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------EcCeEEEE
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------IRGTVAYV 708 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------~~~~iayv 708 (1303)
++++|++++|++..++|+|+||+|++|++++|+||||||||||+++|.|+++|++|.+.. .+..++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYV 80 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEE
Confidence 468999999975246999999999999999999999999999999999999998874321 12469999
Q ss_pred ccCccccc-ccHHHHHccCCC---CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH---
Q 000746 709 PQISWIFN-ATLRKNILFGSE---FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN--- 781 (1303)
Q Consensus 709 ~Q~p~l~~-~TireNI~~g~~---~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~--- 781 (1303)
+|+|.++. .|++||+.++.. .+.+...+ ...+.++.+.-..+........+||||||||++||||++.
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 155 (242)
T cd03295 81 IQQIGLFPHMTVEENIALVPKLLKWPKEKIRE-----RADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPP 155 (242)
T ss_pred ccCccccCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 99999885 699999987532 22111111 1112222221110012345667899999999999999542
Q ss_pred --------------------HHHhHhc--CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHHh
Q 000746 782 --------------------SCIKEEL--RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 782 --------------------~~i~~~~--~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
+.+.+.. .++|+|++||+++.+ ..||+|++|++|++++.|+++++.+
T Consensus 156 llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 225 (242)
T cd03295 156 LLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILR 225 (242)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHc
Confidence 2344432 379999999999975 5699999999999999999888754
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-26 Score=263.43 Aligned_cols=181 Identities=23% Similarity=0.327 Sum_probs=141.9
Q ss_pred cEEEEeeEEEeCCC--CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------EcCeE
Q 000746 640 AVSIKNGNFSWDSK--SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------IRGTV 705 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~--~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------~~~~i 705 (1303)
.++++|++++|++. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|.+|.+.. .+..+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999743 35899999999999999999999999999999999999999985321 13459
Q ss_pred EEEccCcc--cccccHHHHHccCCC---CChh----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHH
Q 000746 706 AYVPQISW--IFNATLRKNILFGSE---FDPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMA 776 (1303)
Q Consensus 706 ayv~Q~p~--l~~~TireNI~~g~~---~~~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLA 776 (1303)
+|++|+|. +++.|+.|||.++.. .+++ ++.++++.+++.+.. ......||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFK-----------TREPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHh-----------hCCcccCCHHHHHHHHHH
Confidence 99999984 678899999987532 2222 234444444443322 224567999999999999
Q ss_pred HHHHH-----------------------HHHhHhcC--CCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhcch
Q 000746 777 RAVFN-----------------------SCIKEELR--GKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGR 831 (1303)
Q Consensus 777 RAl~~-----------------------~~i~~~~~--~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~~ 831 (1303)
||+.. +.+.+..+ ++|+|++||+++.+..||+|++|++|++++.|+++++.+..+
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 232 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATSE 232 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcCHH
Confidence 99642 23333332 799999999999988899999999999999999999876543
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.6e-27 Score=257.44 Aligned_cols=180 Identities=29% Similarity=0.471 Sum_probs=135.6
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-------------EcCeEEE
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-------------IRGTVAY 707 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-------------~~~~iay 707 (1303)
++++|++++|++ .++++|+||++++||+++|+||||||||||+++|.|+++|++|.+.. .+..++|
T Consensus 1 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (222)
T cd03224 1 LEVENLNAGYGK-SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGY 79 (222)
T ss_pred CEEeeEEeecCC-eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEE
Confidence 468999999975 46999999999999999999999999999999999999999874321 1245999
Q ss_pred EccCcccccc-cHHHHHccCCCCC-hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH----
Q 000746 708 VPQISWIFNA-TLRKNILFGSEFD-PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN---- 781 (1303)
Q Consensus 708 v~Q~p~l~~~-TireNI~~g~~~~-~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~---- 781 (1303)
++|++.++.. |++||+.++.... ..+..+.++ .+.+.+..++ ........+||||||||++||||++.
T Consensus 80 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~--~~l~~~~~l~----~~~~~~~~~LS~G~~qrv~laral~~~p~l 153 (222)
T cd03224 80 VPEGRRIFPELTVEENLLLGAYARRRAKRKARLE--RVYELFPRLK----ERRKQLAGTLSGGEQQMLAIARALMSRPKL 153 (222)
T ss_pred eccccccCCCCcHHHHHHHHhhhcCchhHHHHHH--HHHHHHHhhh----hhhhCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999998875 9999998864321 111111111 1111121122 22345567899999999999999542
Q ss_pred -------------------HHHhHhc-CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHH
Q 000746 782 -------------------SCIKEEL-RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELS 827 (1303)
Q Consensus 782 -------------------~~i~~~~-~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~ 827 (1303)
+.+.+.. +++|+|++||+++.+ ..||+|++|++|++++.|+.+++.
T Consensus 154 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 154 LLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 2343332 578999999999986 559999999999999999888764
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-26 Score=261.60 Aligned_cols=184 Identities=21% Similarity=0.302 Sum_probs=144.1
Q ss_pred CCCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CCCceEE-----------
Q 000746 637 ELPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP-----LKDASVV----------- 700 (1303)
Q Consensus 637 ~~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~-----~~g~~~~----------- 700 (1303)
..+.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+.+| ++|.+..
T Consensus 13 ~~~~l~~~~l~~~~~~-~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~ 91 (265)
T PRK14252 13 TQQKSEVNKLNFYYGG-YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE 91 (265)
T ss_pred CCceEEEEEEEEEECC-eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccc
Confidence 3457999999999975 4799999999999999999999999999999999999875 5653321
Q ss_pred -----EcCeEEEEccCcccccccHHHHHccCCC---CC-----hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCch
Q 000746 701 -----IRGTVAYVPQISWIFNATLRKNILFGSE---FD-----PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISG 767 (1303)
Q Consensus 701 -----~~~~iayv~Q~p~l~~~TireNI~~g~~---~~-----~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSG 767 (1303)
.+..++|++|++.++.+|++|||.++.. .+ +++..++++.+++.+++ .+..+....+|||
T Consensus 92 ~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~ 164 (265)
T PRK14252 92 VDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEV-------KDRLGDLAFNLSG 164 (265)
T ss_pred cCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhh-------hHHHhCCcccCCH
Confidence 1346999999999999999999987531 11 23344455544443322 2344566789999
Q ss_pred HHHHHHHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCH
Q 000746 768 GQKQRVSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSF 823 (1303)
Q Consensus 768 GQkQRiaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~ 823 (1303)
|||||++||||+.. +.+.+..+++|+|+|||+++.+. .||++++|++|++++.|++
T Consensus 165 G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~ 244 (265)
T PRK14252 165 GQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGAT 244 (265)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999542 23444445689999999999975 6999999999999999999
Q ss_pred HHHHh
Q 000746 824 EELSK 828 (1303)
Q Consensus 824 ~~l~~ 828 (1303)
+++..
T Consensus 245 ~~~~~ 249 (265)
T PRK14252 245 DTIFI 249 (265)
T ss_pred HHHHh
Confidence 88764
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.2e-27 Score=264.73 Aligned_cols=179 Identities=25% Similarity=0.409 Sum_probs=139.0
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE--------------EcCeEE
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV--------------IRGTVA 706 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~--------------~~~~ia 706 (1303)
++++|+++.|+++.++++|+||+|++||+++|+||||||||||+++|+|+++|.+|.+.. .++.|+
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 81 (275)
T PRK13639 2 LETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVG 81 (275)
T ss_pred EEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheE
Confidence 689999999975456999999999999999999999999999999999999998874321 124599
Q ss_pred EEccCc--ccccccHHHHHccCCC---CCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHH
Q 000746 707 YVPQIS--WIFNATLRKNILFGSE---FDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMAR 777 (1303)
Q Consensus 707 yv~Q~p--~l~~~TireNI~~g~~---~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLAR 777 (1303)
|++|+| .+++.|++|||.++.. .+. ++..++++.+++.+. ......+||||||||++|||
T Consensus 82 ~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-----------~~~~~~~LS~Gq~qrv~lar 150 (275)
T PRK13639 82 IVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGF-----------ENKPPHHLSGGQKKRVAIAG 150 (275)
T ss_pred EEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchh-----------hcCChhhCCHHHHHHHHHHH
Confidence 999998 5788999999987531 222 223334444433211 11235679999999999999
Q ss_pred HHHH-----------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHhcc
Q 000746 778 AVFN-----------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSKHG 830 (1303)
Q Consensus 778 Al~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~~~ 830 (1303)
|++. +.+.+.. +++|+|++||+++.+. .||++++|++|++++.|+++++....
T Consensus 151 al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 228 (275)
T PRK13639 151 ILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSDI 228 (275)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCh
Confidence 9642 2344432 4799999999999876 69999999999999999999886543
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.1e-27 Score=261.60 Aligned_cols=182 Identities=24% Similarity=0.319 Sum_probs=139.9
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCC-----CCCCceEE--------------
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELP-----PLKDASVV-------------- 700 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~-----~~~g~~~~-------------- 700 (1303)
.++++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |.+|.+..
T Consensus 4 ~l~~~~l~~~~~~-~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~ 82 (251)
T PRK14251 4 IISAKDVHLSYGN-YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVE 82 (251)
T ss_pred eEEEEeeEEEECC-eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHH
Confidence 5899999999975 479999999999999999999999999999999999986 35663211
Q ss_pred EcCeEEEEccCcccccccHHHHHccCCC---C-Ch----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHH
Q 000746 701 IRGTVAYVPQISWIFNATLRKNILFGSE---F-DP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQR 772 (1303)
Q Consensus 701 ~~~~iayv~Q~p~l~~~TireNI~~g~~---~-~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQR 772 (1303)
.+..++|++|++.+++.|++||+.++.. . ++ ++..++++..++.++. .........+||||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~qr 155 (251)
T PRK14251 83 LRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET-------KDNLDRNAQAFSGGQQQR 155 (251)
T ss_pred hhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch-------HHHhccChhhCCHHHHHH
Confidence 1346999999999999999999987532 1 11 1223333333332111 112345667899999999
Q ss_pred HHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHh
Q 000746 773 VSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 773 iaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
++||||+.. +.+.+..+++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 156 ~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 235 (251)
T PRK14251 156 ICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFI 235 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHHh
Confidence 999999542 33444445789999999999865 599999999999999999998764
Q ss_pred c
Q 000746 829 H 829 (1303)
Q Consensus 829 ~ 829 (1303)
.
T Consensus 236 ~ 236 (251)
T PRK14251 236 A 236 (251)
T ss_pred C
Confidence 3
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-26 Score=261.81 Aligned_cols=182 Identities=21% Similarity=0.326 Sum_probs=140.6
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CCCceEE-------------
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP-----LKDASVV------------- 700 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~-----~~g~~~~------------- 700 (1303)
+.++++|+++.|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+++| ++|.+..
T Consensus 11 ~~l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 89 (258)
T PRK14268 11 PQIKVENLNLWYGE-KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVV 89 (258)
T ss_pred eeEEEeeeEEEeCC-eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHH
Confidence 46999999999974 4699999999999999999999999999999999999875 6764321
Q ss_pred -EcCeEEEEccCcccccccHHHHHccCCC---CChhh----HHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHH
Q 000746 701 -IRGTVAYVPQISWIFNATLRKNILFGSE---FDPAK----YWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQR 772 (1303)
Q Consensus 701 -~~~~iayv~Q~p~l~~~TireNI~~g~~---~~~~~----~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQR 772 (1303)
.++.++|++|++.+++.|++||+.++.. .+.++ ..++++.+++.+++ .........+||||||||
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG~~qr 162 (258)
T PRK14268 90 ELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDET-------SDRLKSPALSLSGGQQQR 162 (258)
T ss_pred HHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcch-------hhhhcCChhhCCHHHHHH
Confidence 1345999999999999999999987531 22222 23333333332111 122345667899999999
Q ss_pred HHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHh
Q 000746 773 VSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 773 iaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
++||||++. +.+++..+++|+|++||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 163 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 242 (258)
T PRK14268 163 LCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFH 242 (258)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999642 33444445799999999999875 599999999999999999998864
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-26 Score=260.16 Aligned_cols=181 Identities=24% Similarity=0.362 Sum_probs=139.6
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CCCceEE--------------
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP-----LKDASVV-------------- 700 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~-----~~g~~~~-------------- 700 (1303)
.++++|+++.|++ .++++|+||+|++||+++|+||||||||||+++|+|.+++ ++|.+..
T Consensus 3 ~l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 81 (250)
T PRK14240 3 KISVKDLDLFYGD-FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQ 81 (250)
T ss_pred eEEEEEEEEEECC-ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHH
Confidence 5899999999975 4799999999999999999999999999999999998763 4663221
Q ss_pred EcCeEEEEccCcccccccHHHHHccCCCC----Ch----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHH
Q 000746 701 IRGTVAYVPQISWIFNATLRKNILFGSEF----DP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQR 772 (1303)
Q Consensus 701 ~~~~iayv~Q~p~l~~~TireNI~~g~~~----~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQR 772 (1303)
.++.++|++|++.+++.|++||+.++... +. ++..++++.+++.+++. ........+||||||||
T Consensus 82 ~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~qr 154 (250)
T PRK14240 82 LRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK-------DRLKKSALGLSGGQQQR 154 (250)
T ss_pred HhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhH-------HHHhcCCCCCCHHHHHH
Confidence 13469999999999999999999876321 11 22233333333322221 23445677899999999
Q ss_pred HHHHHHHH-----------------------HHHHhHhcCCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHh
Q 000746 773 VSMARAVF-----------------------NSCIKEELRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 773 iaLARAl~-----------------------~~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
++||||++ .+.+.+..+++|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus 155 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 234 (250)
T PRK14240 155 LCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLFT 234 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999954 234444446789999999999765 599999999999999999988764
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=9e-27 Score=258.47 Aligned_cols=172 Identities=23% Similarity=0.396 Sum_probs=134.2
Q ss_pred cEEEEeeEEEeCCC---CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----E-----------
Q 000746 640 AVSIKNGNFSWDSK---SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----I----------- 701 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~---~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----~----------- 701 (1303)
.++++|+++.|+++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.+.. +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 58999999999743 36999999999999999999999999999999999999999874321 0
Q ss_pred -cCeEEEEccCcccccc-cHHHHHccCC---CCCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHH
Q 000746 702 -RGTVAYVPQISWIFNA-TLRKNILFGS---EFDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQR 772 (1303)
Q Consensus 702 -~~~iayv~Q~p~l~~~-TireNI~~g~---~~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQR 772 (1303)
+..++|++|++.++.. |++||+.++. ..++ ++..++++..++. ........+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLE-----------HRANHRPSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-----------hhhhCChhhCCHHHHHH
Confidence 1459999999998864 9999998742 1222 2233334433332 22344567899999999
Q ss_pred HHHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCcccccCEEEEEeCCEEEEecC
Q 000746 773 VSMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGS 822 (1303)
Q Consensus 773 iaLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~ 822 (1303)
++||||+.. +.+.+.. +++|+|++||+++.+..+|++++|++|++++.|+
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999542 2344432 4799999999999998899999999999998775
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-26 Score=261.69 Aligned_cols=180 Identities=24% Similarity=0.359 Sum_probs=139.8
Q ss_pred CcEEEEeeEEEeCCC-CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE-------------cCe
Q 000746 639 PAVSIKNGNFSWDSK-SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI-------------RGT 704 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~-~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~-------------~~~ 704 (1303)
+.++++|+++.|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|.+|.+ .+ ++.
T Consensus 6 ~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i-~~~g~~~~~~~~~~~~~~ 84 (269)
T PRK13648 6 SIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEI-FYNNQAITDDNFEKLRKH 84 (269)
T ss_pred ceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE-EECCEECCcCCHHHHHhh
Confidence 358999999999754 369999999999999999999999999999999999999998743 32 235
Q ss_pred EEEEccCcc--cccccHHHHHccCCC---CChh----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHH
Q 000746 705 VAYVPQISW--IFNATLRKNILFGSE---FDPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSM 775 (1303)
Q Consensus 705 iayv~Q~p~--l~~~TireNI~~g~~---~~~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaL 775 (1303)
++|++|+|. ++..|+++|+.++.. .+.+ +..++++..++.+. ......+||||||||++|
T Consensus 85 i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~l 153 (269)
T PRK13648 85 IGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLER-----------ADYEPNALSGGQKQRVAI 153 (269)
T ss_pred eeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchh-----------hhCCcccCCHHHHHHHHH
Confidence 999999995 456789999988632 2222 22233333333221 223457899999999999
Q ss_pred HHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhcc
Q 000746 776 ARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHG 830 (1303)
Q Consensus 776 ARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~ 830 (1303)
|||++. +.+++.. .++|+|++||+++.+..||+|++|++|++++.|+++++....
T Consensus 154 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 233 (269)
T PRK13648 154 AGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHA 233 (269)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcCH
Confidence 999642 2344433 378999999999998889999999999999999999886543
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-26 Score=260.53 Aligned_cols=183 Identities=22% Similarity=0.341 Sum_probs=140.8
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCC-----CCCCceEE----E--------
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELP-----PLKDASVV----I-------- 701 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~-----~~~g~~~~----~-------- 701 (1303)
..++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|.+.. +
T Consensus 12 ~~l~i~nl~~~~~~-~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~ 90 (269)
T PRK14259 12 IIISLQNVTISYGT-FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPV 90 (269)
T ss_pred ceEEEEeEEEEECC-EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHH
Confidence 46999999999975 469999999999999999999999999999999999987 46764321 1
Q ss_pred --cCeEEEEccCcccccccHHHHHccCCCC---C---hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHH
Q 000746 702 --RGTVAYVPQISWIFNATLRKNILFGSEF---D---PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRV 773 (1303)
Q Consensus 702 --~~~iayv~Q~p~l~~~TireNI~~g~~~---~---~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRi 773 (1303)
++.++|++|++.++..|++||+.++... + +++..++++.+++.. +..........+||||||||+
T Consensus 91 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~G~~qrl 163 (269)
T PRK14259 91 EVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWD-------ECKDKLNESGYSLSGGQQQRL 163 (269)
T ss_pred HHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcc-------hhhhhhCCCcccCCHHHHHHH
Confidence 2359999999999988999999986432 1 122333344333321 122234456678999999999
Q ss_pred HHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCcc-cccCEEEEEeC-----------CEEE
Q 000746 774 SMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFL-PHVDRIILVSE-----------GMIK 818 (1303)
Q Consensus 774 aLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l-~~aD~ii~l~~-----------G~i~ 818 (1303)
+||||++. +.+.+..+++|+|++||+++.+ ..||++++|++ |+++
T Consensus 164 ~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~ 243 (269)
T PRK14259 164 CIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLV 243 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceEE
Confidence 99999542 3344444578999999999886 56999999996 6799
Q ss_pred EecCHHHHHhc
Q 000746 819 EEGSFEELSKH 829 (1303)
Q Consensus 819 ~~g~~~~l~~~ 829 (1303)
+.|+.+++...
T Consensus 244 ~~~~~~~~~~~ 254 (269)
T PRK14259 244 EFNETKKIFNS 254 (269)
T ss_pred EeCCHHHHHhC
Confidence 99999988653
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-26 Score=263.99 Aligned_cols=186 Identities=24% Similarity=0.391 Sum_probs=139.4
Q ss_pred CcEEEEeeEEEeCCCC----CccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE--------------
Q 000746 639 PAVSIKNGNFSWDSKS----PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-------------- 700 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~----~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-------------- 700 (1303)
+.++++|++++|+++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.+..
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 4689999999997542 5999999999999999999999999999999999999999875321
Q ss_pred ---EcCeEEEEccCcc--cccccHHHHHccCCC---CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHH
Q 000746 701 ---IRGTVAYVPQISW--IFNATLRKNILFGSE---FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQR 772 (1303)
Q Consensus 701 ---~~~~iayv~Q~p~--l~~~TireNI~~g~~---~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQR 772 (1303)
.++.|+|++|+|. +++.|++|||.++.. .+.++..+.+ ..+.+.+ .++.+ .......+||||||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~--~~ll~~~-~L~~~---~~~~~~~~LS~Gq~qr 158 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKV--PELLKLV-QLPED---YVKRSPFELSGGQKRR 158 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHc-CCChh---HhcCChhhCCHHHHHH
Confidence 1236999999984 678899999987642 2222211111 1111221 22222 1234567899999999
Q ss_pred HHHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHH
Q 000746 773 VSMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEEL 826 (1303)
Q Consensus 773 iaLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l 826 (1303)
++||||++. +.+.+.. .++|+|++||+++.+ ..||+|++|++|++++.|+++++
T Consensus 159 v~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 238 (289)
T PRK13645 159 VALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEI 238 (289)
T ss_pred HHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999642 2344433 378999999999986 56999999999999999999887
Q ss_pred Hhcc
Q 000746 827 SKHG 830 (1303)
Q Consensus 827 ~~~~ 830 (1303)
.+..
T Consensus 239 ~~~~ 242 (289)
T PRK13645 239 FSNQ 242 (289)
T ss_pred hcCH
Confidence 6543
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-26 Score=260.13 Aligned_cols=183 Identities=21% Similarity=0.298 Sum_probs=142.7
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CCCceEE-------------
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP-----LKDASVV------------- 700 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~-----~~g~~~~------------- 700 (1303)
+.++++|+++.|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|.+..
T Consensus 3 ~~l~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (251)
T PRK14270 3 IKMESKNLNLWYGE-KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVV 81 (251)
T ss_pred cEEEEEEeEEEECC-eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHH
Confidence 35899999999974 4699999999999999999999999999999999999875 5663321
Q ss_pred -EcCeEEEEccCcccccccHHHHHccCCCC----Ch----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHH
Q 000746 701 -IRGTVAYVPQISWIFNATLRKNILFGSEF----DP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQ 771 (1303)
Q Consensus 701 -~~~~iayv~Q~p~l~~~TireNI~~g~~~----~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQ 771 (1303)
.+..++|++|++.+++.|++||+.++... +. ++..++++.+++.+++. .........|||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~q 154 (251)
T PRK14270 82 ELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVK-------DDLKKSALKLSGGQQQ 154 (251)
T ss_pred HHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhh-------hHhhCCcccCCHHHHH
Confidence 13459999999999999999999976321 21 23344555554433222 2234566789999999
Q ss_pred HHHHHHHHH-----------------------HHHHhHhcCCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHH
Q 000746 772 RVSMARAVF-----------------------NSCIKEELRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELS 827 (1303)
Q Consensus 772 RiaLARAl~-----------------------~~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~ 827 (1303)
|++||||+. .+.+++..+++|+|++||+++.+. .||++++|++|++++.|+.+++.
T Consensus 155 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 155 RLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHh
Confidence 999999954 234445445789999999999865 59999999999999999999886
Q ss_pred hc
Q 000746 828 KH 829 (1303)
Q Consensus 828 ~~ 829 (1303)
..
T Consensus 235 ~~ 236 (251)
T PRK14270 235 LE 236 (251)
T ss_pred cC
Confidence 43
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-26 Score=263.08 Aligned_cols=180 Identities=28% Similarity=0.447 Sum_probs=138.4
Q ss_pred cEEEEeeEEEeCCC----CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----E----------
Q 000746 640 AVSIKNGNFSWDSK----SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----I---------- 701 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~----~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----~---------- 701 (1303)
.++++|+++.|++. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. +
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 37899999999742 36999999999999999999999999999999999999999874321 1
Q ss_pred --cCeEEEEccCc--ccccccHHHHHccCCC---CChh----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHH
Q 000746 702 --RGTVAYVPQIS--WIFNATLRKNILFGSE---FDPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQK 770 (1303)
Q Consensus 702 --~~~iayv~Q~p--~l~~~TireNI~~g~~---~~~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQk 770 (1303)
+..|+|++|+| .+++.|++|||.++.. .+.+ +..++++.+++..+ .......+||||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~----------~~~~~~~~LSgGq~ 151 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSED----------LISKSPFELSGGQM 151 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChh----------HhhCCcccCCHHHH
Confidence 23599999998 5778899999987532 2222 22333333333211 12344578999999
Q ss_pred HHHHHHHHHHH-----------------------HHHhHhc-CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHH
Q 000746 771 QRVSMARAVFN-----------------------SCIKEEL-RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEE 825 (1303)
Q Consensus 771 QRiaLARAl~~-----------------------~~i~~~~-~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~ 825 (1303)
||++||||+.. +.+.+.. ++.|+|++||+++.+ ..||++++|++|++++.|++++
T Consensus 152 qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 231 (287)
T PRK13641 152 RRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKE 231 (287)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999542 3344432 478999999999986 4699999999999999999998
Q ss_pred HHhc
Q 000746 826 LSKH 829 (1303)
Q Consensus 826 l~~~ 829 (1303)
+...
T Consensus 232 ~~~~ 235 (287)
T PRK13641 232 IFSD 235 (287)
T ss_pred HhcC
Confidence 7653
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-26 Score=254.58 Aligned_cols=168 Identities=28% Similarity=0.426 Sum_probs=130.6
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE-----------cCeEEEEc
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI-----------RGTVAYVP 709 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~-----------~~~iayv~ 709 (1303)
++++|+++.|++ .++++|+||+|++||+++|+||||||||||+++|+|+++|.+|.+ .+ +..++|++
T Consensus 1 i~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v-~~~g~~~~~~~~~~~~i~~~~ 78 (213)
T cd03301 1 VELENVTKRFGN-VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRI-YIGGRDVTDLPPKDRDIAMVF 78 (213)
T ss_pred CEEEeeEEEECC-eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEECCcCCcccceEEEEe
Confidence 468999999975 479999999999999999999999999999999999999988743 32 23599999
Q ss_pred cCccccc-ccHHHHHccCCC---CChh----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH
Q 000746 710 QISWIFN-ATLRKNILFGSE---FDPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN 781 (1303)
Q Consensus 710 Q~p~l~~-~TireNI~~g~~---~~~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~ 781 (1303)
|++.++. .|++||+.++.. .+++ +..+.++..++++ .......+||||||||++||||+..
T Consensus 79 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qr~~laral~~ 147 (213)
T cd03301 79 QNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEH-----------LLDRKPKQLSGGQRQRVALGRAIVR 147 (213)
T ss_pred cChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHH-----------HHhCChhhCCHHHHHHHHHHHHHhc
Confidence 9999884 699999987532 2222 2233333333332 2334456899999999999999642
Q ss_pred -----------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEec
Q 000746 782 -----------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEG 821 (1303)
Q Consensus 782 -----------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g 821 (1303)
+.+++.. .++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 148 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 148 EPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 2344432 3789999999999865 59999999999999875
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-26 Score=263.19 Aligned_cols=184 Identities=20% Similarity=0.370 Sum_probs=141.0
Q ss_pred CCCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCC-----CCCCceEE-----------
Q 000746 637 ELPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELP-----PLKDASVV----------- 700 (1303)
Q Consensus 637 ~~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~-----~~~g~~~~----------- 700 (1303)
..+.++++|+++.|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|.+..
T Consensus 36 ~~~~l~i~~l~~~~~~-~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 36 GETVIEARDLNVFYGD-EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred CCceEEEEEEEEEECC-EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 4456999999999975 469999999999999999999999999999999999987 56764321
Q ss_pred ---EcCeEEEEccCcccccccHHHHHccCCC---CC---hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHH
Q 000746 701 ---IRGTVAYVPQISWIFNATLRKNILFGSE---FD---PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQ 771 (1303)
Q Consensus 701 ---~~~~iayv~Q~p~l~~~TireNI~~g~~---~~---~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQ 771 (1303)
.++.++|++|++.+|..|++||+.++.. .. +++++++++..++.+.+. .....+..+|||||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LSgGe~q 187 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVK-------DQLDSSGLDLSGGQQQ 187 (285)
T ss_pred hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhH-------HHHhCCcccCCHHHHH
Confidence 1346999999999998899999987531 11 223344444444322221 1234567789999999
Q ss_pred HHHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCccc-ccCEEE-EEeCCEEEEecCHHHH
Q 000746 772 RVSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFLP-HVDRII-LVSEGMIKEEGSFEEL 826 (1303)
Q Consensus 772 RiaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l~-~aD~ii-~l~~G~i~~~g~~~~l 826 (1303)
|++||||++. +.+++..+++|+|++||+++.+. .||+++ +|++|++++.|+++++
T Consensus 188 rv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 188 RLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence 9999999642 33444445689999999999975 599975 5799999999999887
Q ss_pred Hh
Q 000746 827 SK 828 (1303)
Q Consensus 827 ~~ 828 (1303)
.+
T Consensus 268 ~~ 269 (285)
T PRK14254 268 FE 269 (285)
T ss_pred Hh
Confidence 54
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-26 Score=261.33 Aligned_cols=184 Identities=21% Similarity=0.310 Sum_probs=141.5
Q ss_pred CCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCC-----CCCCceEE------------
Q 000746 638 LPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELP-----PLKDASVV------------ 700 (1303)
Q Consensus 638 ~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~-----~~~g~~~~------------ 700 (1303)
.+.++++|+++.|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+++ |++|.+..
T Consensus 22 ~~~l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 22 KVVFDTQNLNLWYGE-DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred ceEEEEeeeEEEECC-cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 346999999999975 469999999999999999999999999999999999987 57774321
Q ss_pred --EcCeEEEEccCcccccccHHHHHccCCC---CChh-h----HHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHH
Q 000746 701 --IRGTVAYVPQISWIFNATLRKNILFGSE---FDPA-K----YWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQK 770 (1303)
Q Consensus 701 --~~~~iayv~Q~p~l~~~TireNI~~g~~---~~~~-~----~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQk 770 (1303)
.++.++|++|+|.+|..|++||+.++.. .+++ . ..++++..++.+ +........+.+||||||
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~l~~~~~~~~~~LSgGe~ 173 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWD-------ELKDRLHDNAYGLSGGQQ 173 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcc-------hHHHHHhcCcccCCHHHH
Confidence 1346999999999998999999987532 2211 1 112222221111 222334567789999999
Q ss_pred HHHHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHH
Q 000746 771 QRVSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEEL 826 (1303)
Q Consensus 771 QRiaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l 826 (1303)
||++||||++. +.+.+..+++|+|++||+++.+. .||++++|++|++++.|+++++
T Consensus 174 qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 174 QRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKI 253 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999642 34445446799999999999875 5999999999999999999988
Q ss_pred Hhc
Q 000746 827 SKH 829 (1303)
Q Consensus 827 ~~~ 829 (1303)
..+
T Consensus 254 ~~~ 256 (271)
T PRK14238 254 FSN 256 (271)
T ss_pred HcC
Confidence 653
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-26 Score=251.92 Aligned_cols=168 Identities=22% Similarity=0.334 Sum_probs=134.6
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE-----------cCeEEEEc
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI-----------RGTVAYVP 709 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~-----------~~~iayv~ 709 (1303)
++++|++++|++ .++|+|+||++++|++++|+||||||||||+++|+|+.+|++|.+ .+ ++.++|++
T Consensus 1 l~~~~l~~~~~~-~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~~~i~~~~ 78 (208)
T cd03268 1 LKTNDLTKTYGK-KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEI-TFDGKSYQKNIEALRRIGALI 78 (208)
T ss_pred CEEEEEEEEECC-eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEE-EECCCcccchHHHHhhEEEec
Confidence 468999999964 479999999999999999999999999999999999999998743 32 24699999
Q ss_pred cCcccc-cccHHHHHccCCC---CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH----
Q 000746 710 QISWIF-NATLRKNILFGSE---FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN---- 781 (1303)
Q Consensus 710 Q~p~l~-~~TireNI~~g~~---~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~---- 781 (1303)
|++.++ +.|++||+.++.. .++++..++++..++.+.. ......||||||||++||||+..
T Consensus 79 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la~al~~~p~l 147 (208)
T cd03268 79 EAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSA-----------KKKVKGFSLGMKQRLGIALALLGNPDL 147 (208)
T ss_pred CCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHH-----------hhhHhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999887 6799999987532 2445556666666655433 23456799999999999999542
Q ss_pred -------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEec
Q 000746 782 -------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEG 821 (1303)
Q Consensus 782 -------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g 821 (1303)
+.+.+.. +++|+|++||+++.+. .||++++|++|++++.|
T Consensus 148 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 148 LILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 2333332 4799999999999875 59999999999998765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-26 Score=255.49 Aligned_cols=170 Identities=20% Similarity=0.355 Sum_probs=131.7
Q ss_pred EEEEeeEEEeCCCC---CccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-----------EcCeEE
Q 000746 641 VSIKNGNFSWDSKS---PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-----------IRGTVA 706 (1303)
Q Consensus 641 i~~~~~~f~~~~~~---~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-----------~~~~ia 706 (1303)
++++|+++.|++.. ++++|+||++++||+++|+|+||||||||+++|.|+++|++|.+.. .++.++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~ 81 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEE
Confidence 67899999997531 6999999999999999999999999999999999999999874321 134699
Q ss_pred EEccCccccc-ccHHHHHccCCC---CCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHH
Q 000746 707 YVPQISWIFN-ATLRKNILFGSE---FDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARA 778 (1303)
Q Consensus 707 yv~Q~p~l~~-~TireNI~~g~~---~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARA 778 (1303)
|++|+|.++. .|++||+.+... .++ ++..++++..++. ........+||||||||++||||
T Consensus 82 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv~lara 150 (218)
T cd03266 82 FVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGME-----------ELLDRRVGGFSTGMRQKVAIARA 150 (218)
T ss_pred EecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-----------HHHhhhhhhcCHHHHHHHHHHHH
Confidence 9999999987 499999976421 121 2233344444333 23345667899999999999999
Q ss_pred HHH-----------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEec
Q 000746 779 VFN-----------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEG 821 (1303)
Q Consensus 779 l~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g 821 (1303)
+.. +.+.+.. +++|+|++||+++.+. .+|++++|++|++++.|
T Consensus 151 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 151 LVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 542 2333332 4789999999999865 59999999999998764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.7e-26 Score=251.91 Aligned_cols=176 Identities=26% Similarity=0.391 Sum_probs=138.4
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----------EcCeEEEEcc
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----------IRGTVAYVPQ 710 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----------~~~~iayv~Q 710 (1303)
++++|++++|++. ..|+||++++|++++|+||||||||||+++|+|+++|.+|.+.. .+..++|++|
T Consensus 2 l~~~~l~~~~~~~---~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 78 (232)
T PRK10771 2 LKLTDITWLYHHL---PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQ 78 (232)
T ss_pred eEEEEEEEEECCc---cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEec
Confidence 6899999999742 24999999999999999999999999999999999999874321 1235999999
Q ss_pred Ccccccc-cHHHHHccCCC--C-----ChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-
Q 000746 711 ISWIFNA-TLRKNILFGSE--F-----DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN- 781 (1303)
Q Consensus 711 ~p~l~~~-TireNI~~g~~--~-----~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~- 781 (1303)
++.++.+ |++||+.++.. . ++++..++++..++.+.++..| ..||||||||++||||+..
T Consensus 79 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~~~ 147 (232)
T PRK10771 79 ENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----------GQLSGGQRQRVALARCLVRE 147 (232)
T ss_pred ccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc-----------ccCCHHHHHHHHHHHHHhcC
Confidence 9998864 99999987531 1 1234555666666654444333 4799999999999999542
Q ss_pred ----------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHhcc
Q 000746 782 ----------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSKHG 830 (1303)
Q Consensus 782 ----------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~~~ 830 (1303)
+.+.+.. .++|+|++||+++.+. .||++++|++|++.+.|+++++.+..
T Consensus 148 p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~~ 221 (232)
T PRK10771 148 QPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSGK 221 (232)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCh
Confidence 2344433 3789999999999875 59999999999999999999887543
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-26 Score=259.76 Aligned_cols=177 Identities=24% Similarity=0.373 Sum_probs=139.7
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE-------------cCeE
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI-------------RGTV 705 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~-------------~~~i 705 (1303)
..++++|+++.|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|.+ .+ ++.+
T Consensus 10 ~~l~i~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 10 TTFALRNVSFRVPG-RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEI-LLDAQPLESWSSKAFARKV 87 (265)
T ss_pred ceEEEeeEEEEECC-EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEE-EECCEehhhCCHHHHhhhe
Confidence 46899999999974 479999999999999999999999999999999999999988743 33 2359
Q ss_pred EEEccCccccc-ccHHHHHccCCC--------C---ChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHH
Q 000746 706 AYVPQISWIFN-ATLRKNILFGSE--------F---DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRV 773 (1303)
Q Consensus 706 ayv~Q~p~l~~-~TireNI~~g~~--------~---~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRi 773 (1303)
+|++|++.++. .|++||+.++.. . ++++..+.++.+++.+.++. ...+||||||||+
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv 156 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHR-----------LVDSLSGGERQRA 156 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcC-----------CcccCCHHHHHHH
Confidence 99999987664 599999987531 1 12234555555555443322 2357999999999
Q ss_pred HHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHH
Q 000746 774 SMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELS 827 (1303)
Q Consensus 774 aLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~ 827 (1303)
+||||+.. +.+.+.. .++|+|++||+++.+. .||+|++|++|++++.|+.+++.
T Consensus 157 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 157 WIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 99999532 2344432 3789999999999875 69999999999999999998876
Q ss_pred h
Q 000746 828 K 828 (1303)
Q Consensus 828 ~ 828 (1303)
.
T Consensus 237 ~ 237 (265)
T PRK10575 237 R 237 (265)
T ss_pred C
Confidence 4
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-26 Score=266.25 Aligned_cols=179 Identities=25% Similarity=0.382 Sum_probs=139.5
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-----------EcCeEEE
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-----------IRGTVAY 707 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-----------~~~~iay 707 (1303)
..++++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|.+.. .+++|||
T Consensus 6 ~~i~i~~l~k~~~~-~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~ 84 (306)
T PRK13537 6 APIDFRNVEKRYGD-KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGV 84 (306)
T ss_pred ceEEEEeEEEEECC-eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEE
Confidence 46899999999974 46999999999999999999999999999999999999999874321 1356999
Q ss_pred EccCccccc-ccHHHHHccCCC---CChhhH----HHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHH
Q 000746 708 VPQISWIFN-ATLRKNILFGSE---FDPAKY----WKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAV 779 (1303)
Q Consensus 708 v~Q~p~l~~-~TireNI~~g~~---~~~~~~----~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl 779 (1303)
|||++.++. .|++||+.+... .+..+. .++++.++ +++..++.+ .+||||||||++||||+
T Consensus 85 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~~~----~~LS~G~~qrl~la~aL 153 (306)
T PRK13537 85 VPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAK-------LENKADAKV----GELSGGMKRRLTLARAL 153 (306)
T ss_pred EeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-------CchHhcCch----hhCCHHHHHHHHHHHHH
Confidence 999999884 799999985322 122222 22233222 233334433 47999999999999996
Q ss_pred HH-----------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHhc
Q 000746 780 FN-----------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 780 ~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
+. +.+.+.. +|+|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 154 ~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 154 VNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred hCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 42 3344432 4799999999999985 5999999999999999999998653
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-26 Score=240.84 Aligned_cols=138 Identities=25% Similarity=0.402 Sum_probs=119.2
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc--CeEEEEccCccccccc
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR--GTVAYVPQISWIFNAT 718 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~--~~iayv~Q~p~l~~~T 718 (1303)
++++|++++|++++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|. +.++ ++++|++|++.++++|
T Consensus 1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~~~~~i~~~~q~~~~~~~t 79 (166)
T cd03223 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGR-IGMPEGEDLLFLPQRPYLPLGT 79 (166)
T ss_pred CEEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce-EEECCCceEEEECCCCcccccc
Confidence 468999999975457999999999999999999999999999999999999999874 4454 4899999999999999
Q ss_pred HHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-----------------
Q 000746 719 LRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN----------------- 781 (1303)
Q Consensus 719 ireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~----------------- 781 (1303)
++||+.++ ....||||||||++||||++.
T Consensus 80 v~~nl~~~----------------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~ 125 (166)
T cd03223 80 LREQLIYP----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEE 125 (166)
T ss_pred HHHHhhcc----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHH
Confidence 99999864 246899999999999999642
Q ss_pred ------HHHhHhcCCCEEEEEecCCCcccccCEEEEEeCC
Q 000746 782 ------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEG 815 (1303)
Q Consensus 782 ------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G 815 (1303)
+.+.+. ++|+|++||+++....||++++|++|
T Consensus 126 ~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~ 163 (166)
T cd03223 126 SEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGE 163 (166)
T ss_pred HHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCC
Confidence 223332 68999999999988899999999765
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-26 Score=260.12 Aligned_cols=178 Identities=26% Similarity=0.413 Sum_probs=138.3
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----E-------------
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----I------------- 701 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----~------------- 701 (1303)
+.++++|+++.|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.+.. +
T Consensus 4 ~~l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 82 (257)
T PRK10619 4 NKLNVIDLHKRYGE-HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVA 82 (257)
T ss_pred ccEEEeeeEEEECC-EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccc
Confidence 46899999999975 46999999999999999999999999999999999999998874321 1
Q ss_pred --------cCeEEEEccCccccc-ccHHHHHccCC----CCChh----hHHHHHHHHhhHHHhhcCCCCCCccc-cCCCC
Q 000746 702 --------RGTVAYVPQISWIFN-ATLRKNILFGS----EFDPA----KYWKTVDVSALQHDLDLLPDRDLTEI-GERGV 763 (1303)
Q Consensus 702 --------~~~iayv~Q~p~l~~-~TireNI~~g~----~~~~~----~~~~vl~~~~l~~~i~~lp~g~~T~i-ge~G~ 763 (1303)
+..++|+||++.++. .|++||+.++. ..+++ +..+.++..++. ... .....
T Consensus 83 ~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~ 151 (257)
T PRK10619 83 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGID-----------ERAQGKYPV 151 (257)
T ss_pred cchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCC-----------hhhhhCCcc
Confidence 236999999999986 59999998642 12221 222223222221 211 34567
Q ss_pred CCchHHHHHHHHHHHHHH-----------------------HHHhHhc-CCCEEEEEecCCCcccc-cCEEEEEeCCEEE
Q 000746 764 NISGGQKQRVSMARAVFN-----------------------SCIKEEL-RGKTRILVTNQLHFLPH-VDRIILVSEGMIK 818 (1303)
Q Consensus 764 ~LSGGQkQRiaLARAl~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~~-aD~ii~l~~G~i~ 818 (1303)
.||||||||++||||+.. +.+.+.. +++|+|+|||+++.+.. ||+|++|++|+++
T Consensus 152 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 231 (257)
T PRK10619 152 HLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 231 (257)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 899999999999999642 2333333 48999999999999875 9999999999999
Q ss_pred EecCHHHHHh
Q 000746 819 EEGSFEELSK 828 (1303)
Q Consensus 819 ~~g~~~~l~~ 828 (1303)
+.|+++++.+
T Consensus 232 ~~~~~~~~~~ 241 (257)
T PRK10619 232 EEGAPEQLFG 241 (257)
T ss_pred EeCCHHHhhh
Confidence 9999988764
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-26 Score=263.04 Aligned_cols=179 Identities=23% Similarity=0.395 Sum_probs=137.6
Q ss_pred EEEEeeEEEeCCC----CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----------------
Q 000746 641 VSIKNGNFSWDSK----SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV---------------- 700 (1303)
Q Consensus 641 i~~~~~~f~~~~~----~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~---------------- 700 (1303)
++++|++++|++. .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+..
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 7899999999742 36999999999999999999999999999999999999999875321
Q ss_pred EcCeEEEEccCc--ccccccHHHHHccCCC---CChhhHH----HHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHH
Q 000746 701 IRGTVAYVPQIS--WIFNATLRKNILFGSE---FDPAKYW----KTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQ 771 (1303)
Q Consensus 701 ~~~~iayv~Q~p--~l~~~TireNI~~g~~---~~~~~~~----~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQ 771 (1303)
.+..|+|++|+| .+++.|++|||.++.. .++++.. ++++..++.+ ........+|||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~q 152 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISE----------SLFEKNPFELSGGQMR 152 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCCcccCCHHHHH
Confidence 123599999998 6788999999987532 2232222 2222222211 1123456789999999
Q ss_pred HHHHHHHHHH-----------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHH
Q 000746 772 RVSMARAVFN-----------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEEL 826 (1303)
Q Consensus 772 RiaLARAl~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l 826 (1303)
|++||||++. +.+.+.. .++|+|++||+++.+. .||++++|++|++++.|+++++
T Consensus 153 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (280)
T PRK13649 153 RVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999542 2333332 4789999999999874 6999999999999999999988
Q ss_pred Hhc
Q 000746 827 SKH 829 (1303)
Q Consensus 827 ~~~ 829 (1303)
.+.
T Consensus 233 ~~~ 235 (280)
T PRK13649 233 FQD 235 (280)
T ss_pred hcC
Confidence 654
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-26 Score=259.09 Aligned_cols=182 Identities=24% Similarity=0.339 Sum_probs=138.9
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CCCceEE------------Ec
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP-----LKDASVV------------IR 702 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~-----~~g~~~~------------~~ 702 (1303)
.++++|+++.|++ .++++|+||+|++||+++|+||||||||||+++|.|+++| ++|.+.. .+
T Consensus 3 ~l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 81 (250)
T PRK14247 3 KIEIRDLKVSFGQ-VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELR 81 (250)
T ss_pred eEEEEeeEEEECC-eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHh
Confidence 4889999999975 4699999999999999999999999999999999999974 5664321 13
Q ss_pred CeEEEEccCcccc-cccHHHHHccCCCC-----Ch----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHH
Q 000746 703 GTVAYVPQISWIF-NATLRKNILFGSEF-----DP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQR 772 (1303)
Q Consensus 703 ~~iayv~Q~p~l~-~~TireNI~~g~~~-----~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQR 772 (1303)
..|+|++|+|.++ +.|++||+.++... +. ++..++++.+++.+.+ .........+||||||||
T Consensus 82 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG~~qr 154 (250)
T PRK14247 82 RRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEV-------KDRLDAPAGKLSGGQQQR 154 (250)
T ss_pred ccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcch-------hhhhcCCcccCCHHHHHH
Confidence 4699999999755 67999999875321 11 2233344444432211 112334567899999999
Q ss_pred HHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHh
Q 000746 773 VSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 773 iaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
++||||+.. +.+.+..+++|+|++||+++.+. .||++++|++|++++.|+++++.+
T Consensus 155 v~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (250)
T PRK14247 155 LCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFT 234 (250)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHHc
Confidence 999999542 33444445799999999999874 699999999999999999998864
Q ss_pred c
Q 000746 829 H 829 (1303)
Q Consensus 829 ~ 829 (1303)
.
T Consensus 235 ~ 235 (250)
T PRK14247 235 N 235 (250)
T ss_pred C
Confidence 3
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-26 Score=258.99 Aligned_cols=177 Identities=24% Similarity=0.384 Sum_probs=137.9
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE--------------------
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-------------------- 700 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-------------------- 700 (1303)
|+++|+++.|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.+..
T Consensus 1 i~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 79 (252)
T TIGR03005 1 VRFSDVTKRFGI-LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADE 79 (252)
T ss_pred CEEEEEEEEeCC-eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccch
Confidence 478999999974 47999999999999999999999999999999999999998874321
Q ss_pred -----EcCeEEEEccCcccc-cccHHHHHccCCC----CCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCc
Q 000746 701 -----IRGTVAYVPQISWIF-NATLRKNILFGSE----FDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNIS 766 (1303)
Q Consensus 701 -----~~~~iayv~Q~p~l~-~~TireNI~~g~~----~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LS 766 (1303)
.++.++|++|++.++ +.|++||+.++.. .+. +++.+.++..++. ........+||
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LS 148 (252)
T TIGR03005 80 KHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLA-----------DKADHMPAQLS 148 (252)
T ss_pred hHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-----------hHhhcChhhcC
Confidence 134699999999988 5799999987521 222 1223333333332 23345567899
Q ss_pred hHHHHHHHHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEe
Q 000746 767 GGQKQRVSMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEE 820 (1303)
Q Consensus 767 GGQkQRiaLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~ 820 (1303)
||||||++||||+.. +.+.+.. .++|+|++||+++.+ ..+|++++|++|++++.
T Consensus 149 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T TIGR03005 149 GGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQ 228 (252)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 999999999999542 2344433 378999999999987 46999999999999999
Q ss_pred cCHHHHHhc
Q 000746 821 GSFEELSKH 829 (1303)
Q Consensus 821 g~~~~l~~~ 829 (1303)
|+++++.+.
T Consensus 229 g~~~~~~~~ 237 (252)
T TIGR03005 229 GKPDEIFRQ 237 (252)
T ss_pred CCHHHHhcC
Confidence 999988643
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-26 Score=259.49 Aligned_cols=181 Identities=22% Similarity=0.327 Sum_probs=139.6
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CCCceEE-------------E
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP-----LKDASVV-------------I 701 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~-----~~g~~~~-------------~ 701 (1303)
.++++|+++.|++ .++|+|+||+|++||+++|+||||||||||+++|.|+.+| ++|.... .
T Consensus 3 ~l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~ 81 (249)
T PRK14253 3 KFNIENLDLFYGE-NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADL 81 (249)
T ss_pred eEEEeccEEEECC-eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHH
Confidence 4789999999974 4799999999999999999999999999999999999986 3663221 1
Q ss_pred cCeEEEEccCcccccccHHHHHccCCC---CC-hh----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHH
Q 000746 702 RGTVAYVPQISWIFNATLRKNILFGSE---FD-PA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRV 773 (1303)
Q Consensus 702 ~~~iayv~Q~p~l~~~TireNI~~g~~---~~-~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRi 773 (1303)
+..++|++|+|.++..|++||+.++.. .+ ++ +..++++..++.+++ .+.......+||||||||+
T Consensus 82 ~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~LS~G~~qrv 154 (249)
T PRK14253 82 RIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEV-------KDRLKSHAFGLSGGQQQRL 154 (249)
T ss_pred HhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhh-------hHHhhcCcccCCHHHHHHH
Confidence 245999999999999999999987632 11 11 122233333333222 2334556778999999999
Q ss_pred HHHHHHH-----------------------HHHHhHhcCCCEEEEEecCCCcccc-cCEEEEEeCCEEEEecCHHHHHh
Q 000746 774 SMARAVF-----------------------NSCIKEELRGKTRILVTNQLHFLPH-VDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 774 aLARAl~-----------------------~~~i~~~~~~~TvilvtH~~~~l~~-aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
+||||++ .+.+.+..+++|+|++||+++.+.. ||++++|++|++++.|+.+++..
T Consensus 155 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (249)
T PRK14253 155 CIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFS 233 (249)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 9999954 2344554457899999999998764 99999999999999999887753
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-26 Score=256.88 Aligned_cols=180 Identities=24% Similarity=0.373 Sum_probs=136.9
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-------------EcCeEEE
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-------------IRGTVAY 707 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-------------~~~~iay 707 (1303)
++++|+++.|++ .++|+|+||++++|++++|+||||||||||+++|+|.++|++|.+.. .+..++|
T Consensus 1 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (232)
T cd03218 1 LRAENLSKRYGK-RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGY 79 (232)
T ss_pred CeEEEEEEEeCC-EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEE
Confidence 468999999974 46999999999999999999999999999999999999999874321 1235999
Q ss_pred EccCcccccc-cHHHHHccCCC---CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH--
Q 000746 708 VPQISWIFNA-TLRKNILFGSE---FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN-- 781 (1303)
Q Consensus 708 v~Q~p~l~~~-TireNI~~g~~---~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~-- 781 (1303)
++|++.++.+ |++||+.++.+ .+++...+ .+++.++.+ |..........+||||||||++||||+..
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~p 152 (232)
T cd03218 80 LPQEASIFRKLTVEENILAVLEIRGLSKKEREE-----KLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALATNP 152 (232)
T ss_pred ecCCccccccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 9999998876 99999987532 11111111 111222222 23333455667899999999999999542
Q ss_pred ---------------------HHHhHhc-CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHHh
Q 000746 782 ---------------------SCIKEEL-RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 782 ---------------------~~i~~~~-~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
+.+++.. +++|+|++||+++.+ ..||+|++|++|++++.|+++++..
T Consensus 153 ~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 153 KFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 2333332 478999999999765 5699999999999999999988754
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-26 Score=256.35 Aligned_cols=177 Identities=27% Similarity=0.410 Sum_probs=137.4
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE--------------EcCeEE
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV--------------IRGTVA 706 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~--------------~~~~ia 706 (1303)
++++|+++.|++ .++++|+||++++||+++|+|+||||||||+++|+|+++|++|.+.. .+..++
T Consensus 2 l~~~~l~~~~~~-~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 80 (240)
T PRK09493 2 IEFKNVSKHFGP-TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAG 80 (240)
T ss_pred EEEEeEEEEECC-eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceE
Confidence 679999999974 46999999999999999999999999999999999999999874321 123699
Q ss_pred EEccCccccc-ccHHHHHccCC----CCChhh----HHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHH
Q 000746 707 YVPQISWIFN-ATLRKNILFGS----EFDPAK----YWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMAR 777 (1303)
Q Consensus 707 yv~Q~p~l~~-~TireNI~~g~----~~~~~~----~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLAR 777 (1303)
|++|++.++. .|++||+.++. ..+.++ ..++++..+ .+.........||||||||++|||
T Consensus 81 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~LS~G~~qrv~la~ 149 (240)
T PRK09493 81 MVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVG-----------LAERAHHYPSELSGGQQQRVAIAR 149 (240)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcC-----------ChHHHhcChhhcCHHHHHHHHHHH
Confidence 9999998885 69999998753 122222 222222222 223334455789999999999999
Q ss_pred HHHH-----------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHhc
Q 000746 778 AVFN-----------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 778 Al~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
|+.. +.+.+.. +++|+|++||+++.+. .||++++|++|++++.|+++++.+.
T Consensus 150 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 150 ALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 9542 2333332 4799999999999985 5999999999999999999887643
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-26 Score=261.05 Aligned_cols=188 Identities=23% Similarity=0.317 Sum_probs=142.3
Q ss_pred CCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CCCceEE------------
Q 000746 638 LPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP-----LKDASVV------------ 700 (1303)
Q Consensus 638 ~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~-----~~g~~~~------------ 700 (1303)
.+.++++|++++|++ .++++|+||+|++||+++|+|+||||||||+++|+|+++| .+|.+..
T Consensus 19 ~~~l~i~nl~~~~~~-~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 19 APAMAAVNLTLGFAG-KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred CcEEEEeeEEEEECC-EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 346899999999974 4799999999999999999999999999999999999986 4663321
Q ss_pred -EcCeEEEEccCcccccccHHHHHccCCC----CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHH
Q 000746 701 -IRGTVAYVPQISWIFNATLRKNILFGSE----FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSM 775 (1303)
Q Consensus 701 -~~~~iayv~Q~p~l~~~TireNI~~g~~----~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaL 775 (1303)
.+..++|++|+|.+|+.|++||+.++.. .+++++.+... .+.+.+ .+.+...+.......+||||||||++|
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~--~~l~~~-~l~~~~~~~l~~~~~~LSgGq~qrl~L 174 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQ--ARLTEV-GLWDAVKDRLSDSPFRLSGGQQQLLCL 174 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHH--HHHHHc-CCCchhhhHhhCCcccCCHHHHHHHHH
Confidence 1346999999999999999999987632 23333322111 111111 122222234556778999999999999
Q ss_pred HHHHHH-----------------------HHHhHhcCCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHhc
Q 000746 776 ARAVFN-----------------------SCIKEELRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 776 ARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
|||++. +.+.+..+++|+|++||+++.+. .||++++|++|++++.|+++++.+.
T Consensus 175 Aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 252 (276)
T PRK14271 175 ARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSS 252 (276)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999542 23444445689999999999865 5999999999999999999998654
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-26 Score=260.12 Aligned_cols=182 Identities=23% Similarity=0.301 Sum_probs=138.8
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCC-----CCceEE--------------
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPL-----KDASVV-------------- 700 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~-----~g~~~~-------------- 700 (1303)
.++++|+++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|. +|.+..
T Consensus 4 ~l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 82 (253)
T PRK14267 4 AIETVNLRVYYGS-NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIE 82 (253)
T ss_pred eEEEEeEEEEeCC-eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHH
Confidence 5889999999975 46999999999999999999999999999999999999874 663221
Q ss_pred EcCeEEEEccCcccccc-cHHHHHccCCCC-----Chh----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHH
Q 000746 701 IRGTVAYVPQISWIFNA-TLRKNILFGSEF-----DPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQK 770 (1303)
Q Consensus 701 ~~~~iayv~Q~p~l~~~-TireNI~~g~~~-----~~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQk 770 (1303)
.+..++|++|++.++.. |++||+.++... +.+ +..++++..++.+++ .........+||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~ 155 (253)
T PRK14267 83 VRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEV-------KDRLNDYPSNLSGGQR 155 (253)
T ss_pred HhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccch-------hhhhccChhhCCHHHH
Confidence 12469999999999865 999999875311 122 122233332222111 1223456778999999
Q ss_pred HHHHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHH
Q 000746 771 QRVSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEEL 826 (1303)
Q Consensus 771 QRiaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l 826 (1303)
||++||||+.. +.+.+..+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (253)
T PRK14267 156 QRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKV 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999542 33444445789999999999865 5999999999999999999988
Q ss_pred Hhc
Q 000746 827 SKH 829 (1303)
Q Consensus 827 ~~~ 829 (1303)
.+.
T Consensus 236 ~~~ 238 (253)
T PRK14267 236 FEN 238 (253)
T ss_pred HhC
Confidence 643
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-26 Score=260.05 Aligned_cols=182 Identities=24% Similarity=0.342 Sum_probs=140.2
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CCCceEE--------------
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP-----LKDASVV-------------- 700 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~-----~~g~~~~-------------- 700 (1303)
.++++|+++.|++ .++++|+||++++||+++|+|+||||||||+++|+|+++| .+|.+..
T Consensus 3 ~l~~~~l~~~~~~-~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~ 81 (250)
T PRK14262 3 IIEIENFSAYYGE-KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTE 81 (250)
T ss_pred eEEEEeeEEEeCC-ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHH
Confidence 4889999999974 4799999999999999999999999999999999999874 6663221
Q ss_pred EcCeEEEEccCcccccccHHHHHccCCC---C-Chhh----HHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHH
Q 000746 701 IRGTVAYVPQISWIFNATLRKNILFGSE---F-DPAK----YWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQR 772 (1303)
Q Consensus 701 ~~~~iayv~Q~p~l~~~TireNI~~g~~---~-~~~~----~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQR 772 (1303)
.+..++|++|+|.++..|++||+.++.. . .+++ ..+.++..++.+++ +........+||||||||
T Consensus 82 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~qr 154 (250)
T PRK14262 82 YRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEV-------KSELNKPGTRLSGGQQQR 154 (250)
T ss_pred hhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchh-------HHHHhCChhhcCHHHHHH
Confidence 1346999999999999999999987531 1 1112 22233333332222 123456678999999999
Q ss_pred HHHHHHHH-----------------------HHHHhHhcCCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHHh
Q 000746 773 VSMARAVF-----------------------NSCIKEELRGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 773 iaLARAl~-----------------------~~~i~~~~~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
++||||++ .+.+.+..+++|+|++||+++.+ ..+|++++|++|++++.|+++++.+
T Consensus 155 ~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (250)
T PRK14262 155 LCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVE 234 (250)
T ss_pred HHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHHh
Confidence 99999954 23444444578999999999975 5699999999999999999998865
Q ss_pred c
Q 000746 829 H 829 (1303)
Q Consensus 829 ~ 829 (1303)
.
T Consensus 235 ~ 235 (250)
T PRK14262 235 R 235 (250)
T ss_pred C
Confidence 3
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-26 Score=252.27 Aligned_cols=167 Identities=21% Similarity=0.352 Sum_probs=131.3
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE------------cCeEEEE
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI------------RGTVAYV 708 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~------------~~~iayv 708 (1303)
++++|+++.|++ .++++|+||++++| +++|+||||||||||+++|.|+++|++|.+ .+ ++.++|+
T Consensus 1 i~~~~~~~~~~~-~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~~~~i~~~ 77 (211)
T cd03264 1 LQLENLTKRYGK-KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTI-RIDGQDVLKQPQKLRRRIGYL 77 (211)
T ss_pred CEEEEEEEEECC-EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEE-EECCCccccchHHHHhheEEe
Confidence 478999999965 47999999999999 999999999999999999999999998743 32 3469999
Q ss_pred ccCcccccc-cHHHHHccCCC---CC----hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHH
Q 000746 709 PQISWIFNA-TLRKNILFGSE---FD----PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF 780 (1303)
Q Consensus 709 ~Q~p~l~~~-TireNI~~g~~---~~----~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~ 780 (1303)
+|+|.+|.. |++||+.+... .+ +++..++++..++.+..+ ....+||||||||++||||+.
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al~ 146 (211)
T cd03264 78 PQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAK-----------KKIGSLSGGMRRRVGIAQALV 146 (211)
T ss_pred cCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHh-----------CchhhCCHHHHHHHHHHHHHh
Confidence 999999865 99999986421 12 223444555555543321 234679999999999999953
Q ss_pred H-----------------------HHHhHhcCCCEEEEEecCCCccc-ccCEEEEEeCCEEEEec
Q 000746 781 N-----------------------SCIKEELRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEG 821 (1303)
Q Consensus 781 ~-----------------------~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g 821 (1303)
. +.+++..+++|+|++||+++.+. .+|++++|++|++++.|
T Consensus 147 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 147 GDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 2 33444445799999999999885 59999999999998765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-26 Score=259.94 Aligned_cols=182 Identities=21% Similarity=0.295 Sum_probs=140.5
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CCCceEE--------------
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP-----LKDASVV-------------- 700 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~-----~~g~~~~-------------- 700 (1303)
.++++|+++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+.++ ++|.+..
T Consensus 6 ~i~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 84 (253)
T PRK14261 6 ILSTKNLNLWYGE-KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVA 84 (253)
T ss_pred eEEEeeeEEEECC-eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhh
Confidence 5899999999964 4699999999999999999999999999999999998753 3563211
Q ss_pred EcCeEEEEccCcccccccHHHHHccCCCC----Chh----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHH
Q 000746 701 IRGTVAYVPQISWIFNATLRKNILFGSEF----DPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQR 772 (1303)
Q Consensus 701 ~~~~iayv~Q~p~l~~~TireNI~~g~~~----~~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQR 772 (1303)
.++.++|++|++.+|+.|++||+.++... +.. +..++++..++.+ +..+..+..+.+||||||||
T Consensus 85 ~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~G~~qr 157 (253)
T PRK14261 85 LRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWD-------EVKDRLHDSALSLSGGQQQR 157 (253)
T ss_pred hhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCch-------hhHHHhhcChhhCCHHHHHH
Confidence 13469999999999999999999986431 111 1222333333322 22234567788999999999
Q ss_pred HHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHh
Q 000746 773 VSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 773 iaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
++||||++. +.+....+++|+|++||+++.+. .||++++|++|++++.|+.+++.+
T Consensus 158 v~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 237 (253)
T PRK14261 158 LCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFE 237 (253)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHHh
Confidence 999999542 33444445689999999999885 699999999999999999988764
Q ss_pred c
Q 000746 829 H 829 (1303)
Q Consensus 829 ~ 829 (1303)
.
T Consensus 238 ~ 238 (253)
T PRK14261 238 N 238 (253)
T ss_pred C
Confidence 3
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.4e-26 Score=258.25 Aligned_cols=183 Identities=22% Similarity=0.324 Sum_probs=142.4
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCC-----CCCCceEE-------------
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELP-----PLKDASVV------------- 700 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~-----~~~g~~~~------------- 700 (1303)
+.++++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|.+..
T Consensus 9 ~~l~i~~v~~~~~~-~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 87 (264)
T PRK14243 9 TVLRTENLNVYYGS-FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87 (264)
T ss_pred eEEEEeeeEEEECC-EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence 35899999999975 379999999999999999999999999999999999876 35663321
Q ss_pred -EcCeEEEEccCcccccccHHHHHccCCCC---C---hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHH
Q 000746 701 -IRGTVAYVPQISWIFNATLRKNILFGSEF---D---PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRV 773 (1303)
Q Consensus 701 -~~~~iayv~Q~p~l~~~TireNI~~g~~~---~---~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRi 773 (1303)
.++.++|++|++.+++.|++||+.++... . +++..++++.+++.+++. ......+.+||||||||+
T Consensus 88 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgGq~qrv 160 (264)
T PRK14243 88 EVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVK-------DKLKQSGLSLSGGQQQRL 160 (264)
T ss_pred HHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHH-------HHhcCCcccCCHHHHHHH
Confidence 13469999999999988999999876421 1 123344455555544332 123456778999999999
Q ss_pred HHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCcc-cccCEEEEEe---------CCEEEEe
Q 000746 774 SMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFL-PHVDRIILVS---------EGMIKEE 820 (1303)
Q Consensus 774 aLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l-~~aD~ii~l~---------~G~i~~~ 820 (1303)
+||||++. +.+.+..+++|+|++||+++.+ ..||+|++|+ +|++++.
T Consensus 161 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~ 240 (264)
T PRK14243 161 CIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEF 240 (264)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEe
Confidence 99999642 3344444568999999999986 4689999998 8999999
Q ss_pred cCHHHHHhc
Q 000746 821 GSFEELSKH 829 (1303)
Q Consensus 821 g~~~~l~~~ 829 (1303)
|+++++.+.
T Consensus 241 ~~~~~~~~~ 249 (264)
T PRK14243 241 DRTEKIFNS 249 (264)
T ss_pred CCHHHHHhC
Confidence 999998653
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-26 Score=250.80 Aligned_cols=166 Identities=25% Similarity=0.387 Sum_probs=130.0
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc-----------CeEEEEc
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR-----------GTVAYVP 709 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~-----------~~iayv~ 709 (1303)
|+++|++++|++. . .|+||++++||+++|+||||||||||+++|+|+++|++|.+ .+. ..++|++
T Consensus 1 i~~~~l~~~~~~~-~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i-~~~g~~~~~~~~~~~~i~~~~ 76 (211)
T cd03298 1 VRLDKIRFSYGEQ-P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRV-LINGVDVTAAPPADRPVSMLF 76 (211)
T ss_pred CEEEeEEEEeCCE-e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEEcCcCCHhHccEEEEe
Confidence 4689999999743 2 39999999999999999999999999999999999998743 332 3599999
Q ss_pred cCcccccc-cHHHHHccCCC--C-----ChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH
Q 000746 710 QISWIFNA-TLRKNILFGSE--F-----DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN 781 (1303)
Q Consensus 710 Q~p~l~~~-TireNI~~g~~--~-----~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~ 781 (1303)
|++.++.+ |++||+.++.. . ++++..++++.+++.+..+.. ..+||||||||++||||++.
T Consensus 77 q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~ia~al~~ 145 (211)
T cd03298 77 QENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRL-----------PGELSGGERQRVALARVLVR 145 (211)
T ss_pred cccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCC-----------cccCCHHHHHHHHHHHHHhc
Confidence 99999864 99999987532 1 133455566666655443332 35799999999999999542
Q ss_pred -----------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEec
Q 000746 782 -----------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEG 821 (1303)
Q Consensus 782 -----------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g 821 (1303)
+.+.+.. .++|+|++||+++.+. .||++++|++|++++.|
T Consensus 146 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 146 DKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 2344332 3789999999999875 49999999999998754
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-26 Score=266.21 Aligned_cols=182 Identities=19% Similarity=0.279 Sum_probs=139.6
Q ss_pred CcEEEEeeEEEeCC------------CCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------
Q 000746 639 PAVSIKNGNFSWDS------------KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------ 700 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~------------~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------ 700 (1303)
+.++++|++++|+. ..++++|+||+|++||+++|+|+||||||||+++|+|+++|++|.+..
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~ 86 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLL 86 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECC
Confidence 46899999999963 135899999999999999999999999999999999999998874321
Q ss_pred ---------EcCeEEEEccCc--ccc-cccHHHHHccCC-----CCChhhH----HHHHHHHhhHHHhhcCCCCCCcccc
Q 000746 701 ---------IRGTVAYVPQIS--WIF-NATLRKNILFGS-----EFDPAKY----WKTVDVSALQHDLDLLPDRDLTEIG 759 (1303)
Q Consensus 701 ---------~~~~iayv~Q~p--~l~-~~TireNI~~g~-----~~~~~~~----~~vl~~~~l~~~i~~lp~g~~T~ig 759 (1303)
.+++|+||+|+| .++ ..||.|||.++. ..++++. .+.++..++.++ ...
T Consensus 87 ~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~----------~~~ 156 (331)
T PRK15079 87 GMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPN----------LIN 156 (331)
T ss_pred cCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChH----------Hhc
Confidence 135799999999 365 579999997531 2333322 233333333211 223
Q ss_pred CCCCCCchHHHHHHHHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEe
Q 000746 760 ERGVNISGGQKQRVSMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVS 813 (1303)
Q Consensus 760 e~G~~LSGGQkQRiaLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~ 813 (1303)
....+||||||||++||||+.. +.+.+.. .+.|+|+|||+++.+. .||+|++|+
T Consensus 157 ~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~ 236 (331)
T PRK15079 157 RYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMY 236 (331)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 4567899999999999999642 2333332 3789999999999986 599999999
Q ss_pred CCEEEEecCHHHHHhcc
Q 000746 814 EGMIKEEGSFEELSKHG 830 (1303)
Q Consensus 814 ~G~i~~~g~~~~l~~~~ 830 (1303)
+|+|++.|+.+++.++.
T Consensus 237 ~G~ive~g~~~~i~~~~ 253 (331)
T PRK15079 237 LGHAVELGTYDEVYHNP 253 (331)
T ss_pred CCEEEEEcCHHHHHcCC
Confidence 99999999999987653
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-26 Score=252.38 Aligned_cols=165 Identities=31% Similarity=0.510 Sum_probs=127.9
Q ss_pred EEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc--------CeEEEEccCccc
Q 000746 643 IKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR--------GTVAYVPQISWI 714 (1303)
Q Consensus 643 ~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~--------~~iayv~Q~p~l 714 (1303)
++|++++|++ .++++|+||+|++||+++|+||||||||||+++|.|+++|++|. +.++ ..++|++|+|.+
T Consensus 2 ~~~l~~~~~~-~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~-i~~~g~~~~~~~~~i~~v~q~~~~ 79 (213)
T cd03235 2 VEDLTVSYGG-HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGS-IRVFGKPLEKERKRIGYVPQRRSI 79 (213)
T ss_pred cccceeEECC-EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCE-EEECCccHHHHHhheEEecccccc
Confidence 6789999975 46999999999999999999999999999999999999999874 4443 459999999976
Q ss_pred ---ccccHHHHHccCCCC-----------ChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHH
Q 000746 715 ---FNATLRKNILFGSEF-----------DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF 780 (1303)
Q Consensus 715 ---~~~TireNI~~g~~~-----------~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~ 780 (1303)
++.|++||+.++... ++++..++++..++.+..+ ....+||||||||++||||+.
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~la~al~ 148 (213)
T cd03235 80 DRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELAD-----------RQIGELSGGQQQRVLLARALV 148 (213)
T ss_pred ccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHh-----------CCcccCCHHHHHHHHHHHHHH
Confidence 568999999875421 1233445555555543332 234679999999999999954
Q ss_pred H-----------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEec
Q 000746 781 N-----------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEG 821 (1303)
Q Consensus 781 ~-----------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g 821 (1303)
. +.+.+.. +++|+|++||+++.+. .||++++|++| +++.|
T Consensus 149 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 149 QDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 2 2333332 5789999999999875 58999999886 55543
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-26 Score=256.04 Aligned_cols=186 Identities=19% Similarity=0.322 Sum_probs=139.9
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----E---------cCeEE
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----I---------RGTVA 706 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----~---------~~~ia 706 (1303)
.++++|+++.|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.+.. + +..++
T Consensus 2 ~i~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (242)
T TIGR03411 2 ILYLEGLSVSFDG-FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIG 80 (242)
T ss_pred eEEEEeeEEEcCC-eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCee
Confidence 4789999999975 46999999999999999999999999999999999999999874321 1 23599
Q ss_pred EEccCcccccc-cHHHHHccCCCCChhh------HHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHH
Q 000746 707 YVPQISWIFNA-TLRKNILFGSEFDPAK------YWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAV 779 (1303)
Q Consensus 707 yv~Q~p~l~~~-TireNI~~g~~~~~~~------~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl 779 (1303)
|++|++.++.+ |++||+.++...+... ...........+.++.+ |.+........+||||||||++||||+
T Consensus 81 ~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrv~laral 158 (242)
T TIGR03411 81 RKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI--GLADEADRLAGLLSHGQKQWLEIGMLL 158 (242)
T ss_pred EeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 99999999976 9999998764211000 00000011122223322 223334456678999999999999995
Q ss_pred HH-----------------------HHHhHhcCCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHh
Q 000746 780 FN-----------------------SCIKEELRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 780 ~~-----------------------~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
+. +.+.+..+++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 159 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 159 MQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred hcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 42 33444445789999999999986 599999999999999999988764
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.9e-26 Score=257.13 Aligned_cols=175 Identities=23% Similarity=0.407 Sum_probs=135.4
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCC--CceEEE----------------
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLK--DASVVI---------------- 701 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~--g~~~~~---------------- 701 (1303)
.++++|+++.|++ .++++|+||++++||+++|+||||||||||+++|+|+++|++ +|.+.+
T Consensus 4 ~l~~~nl~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (262)
T PRK09984 4 IIRVEKLAKTFNQ-HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIR 82 (262)
T ss_pred EEEEeeEEEEeCC-eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHH
Confidence 5899999999974 479999999999999999999999999999999999998864 123322
Q ss_pred --cCeEEEEccCccccc-ccHHHHHccCCCC------------C---hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCC
Q 000746 702 --RGTVAYVPQISWIFN-ATLRKNILFGSEF------------D---PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGV 763 (1303)
Q Consensus 702 --~~~iayv~Q~p~l~~-~TireNI~~g~~~------------~---~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~ 763 (1303)
+..++|++|++.++. .|++||+.++... + +++..++++..++.+ .......
T Consensus 83 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~ 151 (262)
T PRK09984 83 KSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVH-----------FAHQRVS 151 (262)
T ss_pred HHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHH-----------HHhCCcc
Confidence 235899999999886 5999999876310 1 112233333333322 2234556
Q ss_pred CCchHHHHHHHHHHHHH-----------------------HHHHhHhc--CCCEEEEEecCCCcc-cccCEEEEEeCCEE
Q 000746 764 NISGGQKQRVSMARAVF-----------------------NSCIKEEL--RGKTRILVTNQLHFL-PHVDRIILVSEGMI 817 (1303)
Q Consensus 764 ~LSGGQkQRiaLARAl~-----------------------~~~i~~~~--~~~TvilvtH~~~~l-~~aD~ii~l~~G~i 817 (1303)
+||||||||++||||+. .+.+.+.. +++|+|++||+++.+ ..||+|++|++|++
T Consensus 152 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i 231 (262)
T PRK09984 152 TLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHV 231 (262)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 89999999999999953 23344443 379999999999975 56999999999999
Q ss_pred EEecCHHHH
Q 000746 818 KEEGSFEEL 826 (1303)
Q Consensus 818 ~~~g~~~~l 826 (1303)
.+.|+++++
T Consensus 232 ~~~g~~~~~ 240 (262)
T PRK09984 232 FYDGSSQQF 240 (262)
T ss_pred EEeCCHHHh
Confidence 999999986
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.1e-26 Score=255.93 Aligned_cols=176 Identities=27% Similarity=0.417 Sum_probs=138.9
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------EcCeEEEE
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------IRGTVAYV 708 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------~~~~iayv 708 (1303)
++++|+++.|++ .++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+..++|+
T Consensus 3 l~~~~l~~~~~~-~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (258)
T PRK13548 3 LEARNLSVRLGG-RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVL 81 (258)
T ss_pred EEEEeEEEEeCC-eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEE
Confidence 789999999975 46999999999999999999999999999999999999999874321 12459999
Q ss_pred ccCccc-ccccHHHHHccCCC-C--C----hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHH
Q 000746 709 PQISWI-FNATLRKNILFGSE-F--D----PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF 780 (1303)
Q Consensus 709 ~Q~p~l-~~~TireNI~~g~~-~--~----~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~ 780 (1303)
+|++.+ ++.|++||+.++.. . + +++..++++..++.+. .......||||||||++||||+.
T Consensus 82 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGe~qrv~la~al~ 150 (258)
T PRK13548 82 PQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHL-----------AGRDYPQLSGGEQQRVQLARVLA 150 (258)
T ss_pred ccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhH-----------hcCCcccCCHHHHHHHHHHHHHh
Confidence 999987 57899999987632 1 1 1233344444444332 22345689999999999999998
Q ss_pred -------H----------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHh
Q 000746 781 -------N----------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 781 -------~----------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
+ +.+.+.. +++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 151 ~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (258)
T PRK13548 151 QLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLT 230 (258)
T ss_pred cccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHhC
Confidence 2 1233332 4789999999999875 699999999999999999988764
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-26 Score=253.56 Aligned_cols=171 Identities=23% Similarity=0.302 Sum_probs=133.4
Q ss_pred CcEEEEeeEEEeCCC---CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----E----------
Q 000746 639 PAVSIKNGNFSWDSK---SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----I---------- 701 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~---~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----~---------- 701 (1303)
+.++++|++++|+++ .++++|+||++++||+++|+||||||||||+++|+|+++|++|.+.. +
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 84 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHH
Confidence 358999999999753 25899999999999999999999999999999999999999875321 1
Q ss_pred --cCeEEEEccCccccc-ccHHHHHccCC---CCC----hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHH
Q 000746 702 --RGTVAYVPQISWIFN-ATLRKNILFGS---EFD----PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQ 771 (1303)
Q Consensus 702 --~~~iayv~Q~p~l~~-~TireNI~~g~---~~~----~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQ 771 (1303)
+..++|++|+|.++. .|++||+.++. ..+ +++..+.++.+++.+.++. ...+|||||||
T Consensus 85 ~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~Ge~q 153 (228)
T PRK10584 85 LRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDH-----------LPAQLSGGEQQ 153 (228)
T ss_pred HHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhC-----------ChhhCCHHHHH
Confidence 136999999999886 59999998642 112 2334455555555443332 33579999999
Q ss_pred HHHHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCcccccCEEEEEeCCEEEEe
Q 000746 772 RVSMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLPHVDRIILVSEGMIKEE 820 (1303)
Q Consensus 772 RiaLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~ 820 (1303)
|++||||+.. +.+.+.. .++|+|++||+++.+..||++++|++|+++++
T Consensus 154 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 154 RVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 9999999642 2344432 37899999999999888999999999999764
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-26 Score=260.17 Aligned_cols=179 Identities=22% Similarity=0.347 Sum_probs=138.0
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE---------------EcC
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV---------------IRG 703 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~---------------~~~ 703 (1303)
..++++|+++.|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+.. .+.
T Consensus 6 ~~l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 6 NLVDMRGVSFTRGN-RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred ceEEEeCeEEEECC-EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 35899999999964 46999999999999999999999999999999999999999874321 123
Q ss_pred eEEEEccCcccccc-cHHHHHccCC----CCChh----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHH
Q 000746 704 TVAYVPQISWIFNA-TLRKNILFGS----EFDPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVS 774 (1303)
Q Consensus 704 ~iayv~Q~p~l~~~-TireNI~~g~----~~~~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRia 774 (1303)
.++|++|++.++.. |++||+.++. ..+.+ +..+.++..++.+ .......+||||||||++
T Consensus 85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgGq~qrv~ 153 (269)
T PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRG-----------AAKLMPSELSGGMARRAA 153 (269)
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChh-----------hhhCChhhCCHHHHHHHH
Confidence 59999999999875 9999998642 12222 1222233332221 122344689999999999
Q ss_pred HHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHh
Q 000746 775 MARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 775 LARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
||||++. +.+.+.. .++|+|++||+++.+. .||++++|++|++++.|+++++.+
T Consensus 154 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 233 (269)
T PRK11831 154 LARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQA 233 (269)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhc
Confidence 9999642 2344432 3789999999998875 599999999999999999999875
Q ss_pred c
Q 000746 829 H 829 (1303)
Q Consensus 829 ~ 829 (1303)
.
T Consensus 234 ~ 234 (269)
T PRK11831 234 N 234 (269)
T ss_pred C
Confidence 4
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-26 Score=253.76 Aligned_cols=175 Identities=25% Similarity=0.408 Sum_probs=134.9
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------EcCeEE
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------IRGTVA 706 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------~~~~ia 706 (1303)
+.++++|+++.|++ .++++|+||+|++||+++|+||||||||||+++|+|+++|++|.+.. .+..++
T Consensus 6 ~~i~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 6 PLLQLQNVGYLAGD-AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred ceEEEeccEEeeCC-ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 35899999999974 46999999999999999999999999999999999999999874321 124699
Q ss_pred EEccCcccccccHHHHHccCCCC-----ChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH
Q 000746 707 YVPQISWIFNATLRKNILFGSEF-----DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN 781 (1303)
Q Consensus 707 yv~Q~p~l~~~TireNI~~g~~~-----~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~ 781 (1303)
|++|++.+++.|++||+.++..+ ++++..+.++..++. ++.......+||||||||++||||++.
T Consensus 85 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LS~G~~qrv~laral~~ 154 (225)
T PRK10247 85 YCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALP----------DTILTKNIAELSGGEKQRISLIRNLQF 154 (225)
T ss_pred EEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCC----------hHHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 99999999999999999874221 122222333333221 123455677899999999999999642
Q ss_pred -----------------------HHHhHhc--CCCEEEEEecCCCcccccCEEEEEe-CCEEEEecCHH
Q 000746 782 -----------------------SCIKEEL--RGKTRILVTNQLHFLPHVDRIILVS-EGMIKEEGSFE 824 (1303)
Q Consensus 782 -----------------------~~i~~~~--~~~TvilvtH~~~~l~~aD~ii~l~-~G~i~~~g~~~ 824 (1303)
+.+.+.. .++|+|++||+++.++.||++++|+ ++..+++|+|+
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 155 MPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 2344433 3789999999999998999999994 66667778775
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-26 Score=255.19 Aligned_cols=180 Identities=25% Similarity=0.371 Sum_probs=135.8
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------------E
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------------I 701 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------------~ 701 (1303)
.++++|+++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. .
T Consensus 2 ~l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (242)
T PRK11124 2 SIQLNGINCFYGA-HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIREL 80 (242)
T ss_pred EEEEEeeEEEECC-eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHH
Confidence 3789999999975 47999999999999999999999999999999999999999874321 1
Q ss_pred cCeEEEEccCccccc-ccHHHHHccCC----CCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHH
Q 000746 702 RGTVAYVPQISWIFN-ATLRKNILFGS----EFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMA 776 (1303)
Q Consensus 702 ~~~iayv~Q~p~l~~-~TireNI~~g~----~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLA 776 (1303)
++.|+|+||+|.++. .|++|||.++. ..+.++..+ ...+.++.+ |.+........+||||||||++||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la 153 (242)
T PRK11124 81 RRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALA-----RAEKLLERL--RLKPYADRFPLHLSGGQQQRVAIA 153 (242)
T ss_pred HhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHH
Confidence 235999999999886 59999997421 111111111 111222222 222334445578999999999999
Q ss_pred HHHHH-----------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHH
Q 000746 777 RAVFN-----------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELS 827 (1303)
Q Consensus 777 RAl~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~ 827 (1303)
||+.. +.+.+.. +++|+|++||+++.+. .||++++|++|++++.|+++++.
T Consensus 154 ral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 229 (242)
T PRK11124 154 RALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFT 229 (242)
T ss_pred HHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhc
Confidence 99542 2344333 4799999999999985 59999999999999999988764
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-26 Score=268.16 Aligned_cols=163 Identities=28% Similarity=0.368 Sum_probs=128.6
Q ss_pred CccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc---------------------CeEEEEccCcc
Q 000746 655 PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR---------------------GTVAYVPQISW 713 (1303)
Q Consensus 655 ~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~---------------------~~iayv~Q~p~ 713 (1303)
.+++|+||+|++||+++|+|+||||||||+++|.|+++|++|.+ .+. .+|+|++|++.
T Consensus 38 ~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I-~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 38 VGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSV-LVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEE-EECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 57999999999999999999999999999999999999998743 221 36999999999
Q ss_pred ccc-ccHHHHHccCCC---CCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH----
Q 000746 714 IFN-ATLRKNILFGSE---FDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN---- 781 (1303)
Q Consensus 714 l~~-~TireNI~~g~~---~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~---- 781 (1303)
+|+ .|++||+.++.. .++ ++..++++..+|.+.. .....+||||||||++||||+..
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~-----------~~~~~~LSgGq~QRV~LARALa~~P~I 185 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWA-----------DKKPGELSGGMQQRVGLARAFAMDADI 185 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 996 799999998742 222 2333444444443322 23345799999999999999542
Q ss_pred -------------------HHHhHhc--CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHHhc
Q 000746 782 -------------------SCIKEEL--RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 782 -------------------~~i~~~~--~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
+.+.+.. .++|+|+|||+++.+ +.+|+|++|++|++++.|+++++..+
T Consensus 186 LLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~ 255 (382)
T TIGR03415 186 LLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN 255 (382)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 2333332 379999999999985 67999999999999999999999754
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-26 Score=269.46 Aligned_cols=164 Identities=24% Similarity=0.350 Sum_probs=128.8
Q ss_pred CccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----E------------cCeEEEEccCccccc-c
Q 000746 655 PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----I------------RGTVAYVPQISWIFN-A 717 (1303)
Q Consensus 655 ~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----~------------~~~iayv~Q~p~l~~-~ 717 (1303)
++|+|+||+|++||+++|+||||||||||+++|.|+++|++|.+.. + +.+++|++|++.+|. .
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 3799999999999999999999999999999999999999874321 0 236999999999985 6
Q ss_pred cHHHHHccCCC---CCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH---------
Q 000746 718 TLRKNILFGSE---FDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN--------- 781 (1303)
Q Consensus 718 TireNI~~g~~---~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~--------- 781 (1303)
|++|||.++.. ++. ++..++++.++|.+.. .....+||||||||++||||+..
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~-----------~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYA-----------HSYPDELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhh-----------hcCcccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 99999997632 222 2334445555443332 23346899999999999999532
Q ss_pred --------------HHHhHhc--CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHHhc
Q 000746 782 --------------SCIKEEL--RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 782 --------------~~i~~~~--~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
+.+.+.. .++|+|++||+++.+ ..||+|++|++|++++.|+++++..+
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~ 255 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNN 255 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhC
Confidence 3344432 479999999999986 56999999999999999999998764
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-26 Score=257.21 Aligned_cols=175 Identities=29% Similarity=0.472 Sum_probs=135.9
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-------------EcCeEEE
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-------------IRGTVAY 707 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-------------~~~~iay 707 (1303)
++++|+++.|++ .++|+|+||++++||+++|+|+||||||||+++|.|+++|.+|.+.. .+..++|
T Consensus 1 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (230)
T TIGR03410 1 LEVSNLNVYYGQ-SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAY 79 (230)
T ss_pred CEEEeEEEEeCC-eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEE
Confidence 468999999975 47999999999999999999999999999999999999999874321 1235999
Q ss_pred EccCcccccc-cHHHHHccCCC-CC---hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-
Q 000746 708 VPQISWIFNA-TLRKNILFGSE-FD---PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN- 781 (1303)
Q Consensus 708 v~Q~p~l~~~-TireNI~~g~~-~~---~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~- 781 (1303)
++|++.++.. |++||+.++.. .. ++...++++..+. ..........+||||||||++||||+..
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~----------l~~~~~~~~~~LS~G~~qrv~la~al~~~ 149 (230)
T TIGR03410 80 VPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPV----------LKEMLGRRGGDLSGGQQQQLAIARALVTR 149 (230)
T ss_pred eccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHh----------HHHHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 9999999875 99999987642 21 1122233332221 1122334566899999999999999642
Q ss_pred ----------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHH
Q 000746 782 ----------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEEL 826 (1303)
Q Consensus 782 ----------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l 826 (1303)
+.+.+.. .++|+|++||+++.+. .||+|+++++|++++.|+++++
T Consensus 150 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 150 PKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 2344433 2789999999999987 5999999999999999999887
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.6e-26 Score=255.89 Aligned_cols=181 Identities=28% Similarity=0.361 Sum_probs=137.6
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-------------------
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------------- 700 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------------- 700 (1303)
.++++|++++|++ .++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+..
T Consensus 3 ~l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (250)
T PRK11264 3 AIEVKNLVKKFHG-QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIR 81 (250)
T ss_pred cEEEeceEEEECC-eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHH
Confidence 4789999999974 46999999999999999999999999999999999999998874321
Q ss_pred -EcCeEEEEccCccccc-ccHHHHHccCC----CCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHH
Q 000746 701 -IRGTVAYVPQISWIFN-ATLRKNILFGS----EFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVS 774 (1303)
Q Consensus 701 -~~~~iayv~Q~p~l~~-~TireNI~~g~----~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRia 774 (1303)
.+..++|++|++.++. .|++||+.++. ..+.++..+.+ .+.++.+ |..........+||||||||++
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~l~~~--gl~~~~~~~~~~LS~Gq~qrv~ 154 (250)
T PRK11264 82 QLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARA-----RELLAKV--GLAGKETSYPRRLSGGQQQRVA 154 (250)
T ss_pred HhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHH-----HHHHHHc--CCcchhhCChhhCChHHHHHHH
Confidence 1246999999999885 79999998642 12221111111 1122222 2222234566789999999999
Q ss_pred HHHHHHH-----------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHh
Q 000746 775 MARAVFN-----------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 775 LARAl~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
||||+.. +.+.+.. +++|+|++||+++.+. .||++++|++|++++.|+++++.+
T Consensus 155 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 233 (250)
T PRK11264 155 IARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFA 233 (250)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence 9999542 2333333 4789999999999875 599999999999999999998764
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.9e-26 Score=255.93 Aligned_cols=181 Identities=20% Similarity=0.338 Sum_probs=138.6
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-------------EcCeEE
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-------------IRGTVA 706 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-------------~~~~ia 706 (1303)
.++++|+++.|++ .++|+|+||++++|++++|+||||||||||+++|.|+++|++|.+.. .+..++
T Consensus 3 ~l~~~~l~~~~~~-~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 81 (241)
T PRK10895 3 TLTAKNLAKAYKG-RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIG 81 (241)
T ss_pred eEEEeCcEEEeCC-EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeE
Confidence 4789999999974 47999999999999999999999999999999999999999874321 124699
Q ss_pred EEccCccccc-ccHHHHHccCCCC----ChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH
Q 000746 707 YVPQISWIFN-ATLRKNILFGSEF----DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN 781 (1303)
Q Consensus 707 yv~Q~p~l~~-~TireNI~~g~~~----~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~ 781 (1303)
|++|++.++. .|++||+.++... ++++.++ ...+.++.+ |.+.........||||||||++||||+..
T Consensus 82 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~ 154 (241)
T PRK10895 82 YLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQRED-----RANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARALAA 154 (241)
T ss_pred EeccCCcccccCcHHHHHhhhhhcccccCHHHHHH-----HHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHHhc
Confidence 9999998886 5999999875321 2221111 112223333 22333455667899999999999999542
Q ss_pred -----------------------HHHhHhc-CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHHh
Q 000746 782 -----------------------SCIKEEL-RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 782 -----------------------~~i~~~~-~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
+.+.... +++|+|++||+++.+ ..||++++|++|++++.|+++++.+
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 155 NPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 2333332 489999999999765 5699999999999999999998764
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-26 Score=252.98 Aligned_cols=167 Identities=23% Similarity=0.399 Sum_probs=128.9
Q ss_pred EEEEeeEEEeCCC---CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----E------------
Q 000746 641 VSIKNGNFSWDSK---SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----I------------ 701 (1303)
Q Consensus 641 i~~~~~~f~~~~~---~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----~------------ 701 (1303)
++++|++++|++. .++++|+||++++|++++|+||||||||||+++|+|+++|.+|.... +
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 6889999999642 36999999999999999999999999999999999999999875321 0
Q ss_pred cCeEEEEccCccccc-ccHHHHHccCC---CCChh----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHH
Q 000746 702 RGTVAYVPQISWIFN-ATLRKNILFGS---EFDPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRV 773 (1303)
Q Consensus 702 ~~~iayv~Q~p~l~~-~TireNI~~g~---~~~~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRi 773 (1303)
+..++|++|++.++. .|++||+.++. .++.+ +..+.++..++. .........||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLE-----------HRINHRPSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-----------hhhhCChhhCCHHHHHHH
Confidence 146999999999884 69999998742 12221 223333333332 223344578999999999
Q ss_pred HHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCcccccCEEEEEeCCEEE
Q 000746 774 SMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLPHVDRIILVSEGMIK 818 (1303)
Q Consensus 774 aLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~~aD~ii~l~~G~i~ 818 (1303)
+||||++. +.+.+.. .++|+|++||+++.+..+|++++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999542 3344432 378999999999998889999999999985
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.2e-26 Score=260.94 Aligned_cols=184 Identities=24% Similarity=0.319 Sum_probs=139.9
Q ss_pred CCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCC-----CCCCceEE------------
Q 000746 638 LPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELP-----PLKDASVV------------ 700 (1303)
Q Consensus 638 ~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~-----~~~g~~~~------------ 700 (1303)
.+.++++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+.+ |++|.+..
T Consensus 37 ~~~l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~ 115 (286)
T PRK14275 37 KPHVVAKNFSIYYGE-FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE 115 (286)
T ss_pred ceEEEEeeeEEEECC-EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence 346899999999975 369999999999999999999999999999999999854 36763211
Q ss_pred --EcCeEEEEccCcccccccHHHHHccCCC---C-Chh----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHH
Q 000746 701 --IRGTVAYVPQISWIFNATLRKNILFGSE---F-DPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQK 770 (1303)
Q Consensus 701 --~~~~iayv~Q~p~l~~~TireNI~~g~~---~-~~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQk 770 (1303)
.++.++|++|+|.++..|++|||.++.. . +++ +..++++..++.+.+ ..........||||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LSgGq~ 188 (286)
T PRK14275 116 VLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEV-------SDRLDKNALGLSGGQQ 188 (286)
T ss_pred HHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccch-------hhHhhCChhhCCHHHH
Confidence 1346999999999998899999997632 1 111 122233333322111 1123456678999999
Q ss_pred HHHHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHH
Q 000746 771 QRVSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEEL 826 (1303)
Q Consensus 771 QRiaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l 826 (1303)
||++||||++. +.+++..+++|+|++||+++.+. .||++++|++|++++.|+++++
T Consensus 189 qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~ 268 (286)
T PRK14275 189 QRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQL 268 (286)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999542 34444445689999999999975 5999999999999999999988
Q ss_pred Hhc
Q 000746 827 SKH 829 (1303)
Q Consensus 827 ~~~ 829 (1303)
.++
T Consensus 269 ~~~ 271 (286)
T PRK14275 269 FTN 271 (286)
T ss_pred HhC
Confidence 653
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.9e-26 Score=258.11 Aligned_cols=187 Identities=25% Similarity=0.375 Sum_probs=139.8
Q ss_pred cEEEEeeEEEeCC--------CCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-----------
Q 000746 640 AVSIKNGNFSWDS--------KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----------- 700 (1303)
Q Consensus 640 ~i~~~~~~f~~~~--------~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----------- 700 (1303)
.++++|+++.|+. +.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.+..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 3789999999963 346999999999999999999999999999999999999999874321
Q ss_pred ----EcCeEEEEccCcc--cc-cccHHHHHccCC----CCCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCC
Q 000746 701 ----IRGTVAYVPQISW--IF-NATLRKNILFGS----EFDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNI 765 (1303)
Q Consensus 701 ----~~~~iayv~Q~p~--l~-~~TireNI~~g~----~~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~L 765 (1303)
.++.|+|++|+|. ++ +.|++|||.++. .++. ++..++++..++.+ ........+|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----------~~~~~~~~~L 151 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRS----------EDADKLPRQL 151 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCChhhC
Confidence 1236999999983 43 579999996532 1222 12222333322211 1234566789
Q ss_pred chHHHHHHHHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEEE
Q 000746 766 SGGQKQRVSMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIKE 819 (1303)
Q Consensus 766 SGGQkQRiaLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~ 819 (1303)
|||||||++||||++. +.+.+.. .++|+|++||+++.+. .||++++|++|++++
T Consensus 152 SgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 231 (265)
T TIGR02769 152 SGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE 231 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEE
Confidence 9999999999999642 2344433 2799999999999986 699999999999999
Q ss_pred ecCHHHHHhc-chHHHHH
Q 000746 820 EGSFEELSKH-GRLFQKL 836 (1303)
Q Consensus 820 ~g~~~~l~~~-~~~~~~l 836 (1303)
.|+++++... ++.++.+
T Consensus 232 ~g~~~~~~~~~~~~~~~~ 249 (265)
T TIGR02769 232 ECDVAQLLSFKHPAGRNL 249 (265)
T ss_pred ECCHHHHcCCCCHHHHHH
Confidence 9999998763 3334434
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-26 Score=253.84 Aligned_cols=174 Identities=26% Similarity=0.343 Sum_probs=129.7
Q ss_pred EEEEeeEEEeCCC---CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE---------------Ec
Q 000746 641 VSIKNGNFSWDSK---SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV---------------IR 702 (1303)
Q Consensus 641 i~~~~~~f~~~~~---~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~---------------~~ 702 (1303)
++++|++++|++. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. .+
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 6899999999754 26999999999999999999999999999999999999999874321 12
Q ss_pred CeEEEEccCcc--cc-cccHHHHHccCCC-----CChhhHHHHHHHHhhHHHhhcCCCCC-CccccCCCCCCchHHHHHH
Q 000746 703 GTVAYVPQISW--IF-NATLRKNILFGSE-----FDPAKYWKTVDVSALQHDLDLLPDRD-LTEIGERGVNISGGQKQRV 773 (1303)
Q Consensus 703 ~~iayv~Q~p~--l~-~~TireNI~~g~~-----~~~~~~~~vl~~~~l~~~i~~lp~g~-~T~ige~G~~LSGGQkQRi 773 (1303)
+.++|++|+|. ++ +.|++||+.++.. .+++...++. .+.++.+ |. .........+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv 154 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAV-----LLLLVGV--GLPEEVLNRYPHELSGGQRQRV 154 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHH-----HHHHHHC--CCChhHhhCCchhcCHHHHHHH
Confidence 46999999993 44 5799999976421 1111111111 1222222 22 1234556678999999999
Q ss_pred HHHHHHHH-----------------------HHHhHhcC--CCEEEEEecCCCccc-ccCEEEEEeCCEEEEec
Q 000746 774 SMARAVFN-----------------------SCIKEELR--GKTRILVTNQLHFLP-HVDRIILVSEGMIKEEG 821 (1303)
Q Consensus 774 aLARAl~~-----------------------~~i~~~~~--~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g 821 (1303)
+||||++. +.+.+..+ ++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 155 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 155 AIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 99999542 33444332 789999999999877 69999999999998764
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-26 Score=253.76 Aligned_cols=165 Identities=26% Similarity=0.427 Sum_probs=128.2
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE---------------EcCeE
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV---------------IRGTV 705 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~---------------~~~~i 705 (1303)
++++|+++.|+++.++|+|+||+|++|++++|+||||||||||+++|+|+++|.+|.+.. .++.+
T Consensus 2 l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 81 (214)
T TIGR02673 2 IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRI 81 (214)
T ss_pred EEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhhe
Confidence 689999999954457999999999999999999999999999999999999998875321 12469
Q ss_pred EEEccCccccc-ccHHHHHccCCC---CC----hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHH
Q 000746 706 AYVPQISWIFN-ATLRKNILFGSE---FD----PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMAR 777 (1303)
Q Consensus 706 ayv~Q~p~l~~-~TireNI~~g~~---~~----~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLAR 777 (1303)
+|++|+|.++. .|++||+.++.. .+ +++.++.++..++.+..+. ...+||||||||++|||
T Consensus 82 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~la~ 150 (214)
T TIGR02673 82 GVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADA-----------FPEQLSGGEQQRVAIAR 150 (214)
T ss_pred EEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhC-----------ChhhCCHHHHHHHHHHH
Confidence 99999999885 699999987521 22 2334445555555433222 23579999999999999
Q ss_pred HHHH-----------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCE
Q 000746 778 AVFN-----------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGM 816 (1303)
Q Consensus 778 Al~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~ 816 (1303)
|+.. +.+++.. +++|+|++||+++.+. .||++++|++|+
T Consensus 151 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 151 AIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 9542 2344432 4899999999999876 499999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.2e-26 Score=255.52 Aligned_cols=183 Identities=22% Similarity=0.327 Sum_probs=140.5
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCC--C---CCCceEE-------------
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELP--P---LKDASVV------------- 700 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~--~---~~g~~~~------------- 700 (1303)
+.++++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+++ | ++|.+..
T Consensus 3 ~~l~~~nl~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 81 (252)
T PRK14256 3 NKVKLEQLNVHFGK-NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPV 81 (252)
T ss_pred cEEEEEEEEEEeCC-eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChH
Confidence 45899999999974 469999999999999999999999999999999999986 4 4663211
Q ss_pred -EcCeEEEEccCccccc-ccHHHHHccCCC----CCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHH
Q 000746 701 -IRGTVAYVPQISWIFN-ATLRKNILFGSE----FDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQK 770 (1303)
Q Consensus 701 -~~~~iayv~Q~p~l~~-~TireNI~~g~~----~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQk 770 (1303)
.++.++|++|++.++. .|++||+.++.. .+. ++..+.++.+++.+.+. ...+....+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 154 (252)
T PRK14256 82 SIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVK-------DRLKSNAMELSGGQQ 154 (252)
T ss_pred HhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcCcCCHHHH
Confidence 1346999999999887 699999986421 122 22334444444433221 123345678999999
Q ss_pred HHHHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHH
Q 000746 771 QRVSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEEL 826 (1303)
Q Consensus 771 QRiaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l 826 (1303)
||++||||++. +.+++..+++|+|++||+++.+ ..||++++|++|++++.|+++++
T Consensus 155 qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14256 155 QRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKI 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999542 3444544678999999999987 46999999999999999999987
Q ss_pred Hhc
Q 000746 827 SKH 829 (1303)
Q Consensus 827 ~~~ 829 (1303)
...
T Consensus 235 ~~~ 237 (252)
T PRK14256 235 FTT 237 (252)
T ss_pred HhC
Confidence 643
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-26 Score=255.12 Aligned_cols=176 Identities=28% Similarity=0.386 Sum_probs=138.2
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----------EcCeEEEEcc
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----------IRGTVAYVPQ 710 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----------~~~~iayv~Q 710 (1303)
++++|++++|++ .++++|+||++++|++++|+|+||||||||+++|+|+++|.+|.+.. .+..++|++|
T Consensus 1 l~~~~l~~~~~~-~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 79 (232)
T cd03300 1 IELENVSKFYGG-FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQ 79 (232)
T ss_pred CEEEeEEEEeCC-eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEec
Confidence 468999999975 46999999999999999999999999999999999999998874321 1346999999
Q ss_pred Ccccccc-cHHHHHccCCC---CC----hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-
Q 000746 711 ISWIFNA-TLRKNILFGSE---FD----PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN- 781 (1303)
Q Consensus 711 ~p~l~~~-TireNI~~g~~---~~----~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~- 781 (1303)
++.++.+ |++||+.++.. .+ ++++.++++..++.+.++ ....+||||||||++||||++.
T Consensus 80 ~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~lS~G~~qrl~laral~~~ 148 (232)
T cd03300 80 NYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYAN-----------RKPSQLSGGQQQRVAIARALVNE 148 (232)
T ss_pred ccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHHHHHHHHhcC
Confidence 9999864 99999986532 12 223344444444443332 3346899999999999999642
Q ss_pred ----------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHh
Q 000746 782 ----------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 782 ----------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
+.+.+.. .++|+|++||+++.++ .||++++|++|++.+.|+++++.+
T Consensus 149 p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~ 220 (232)
T cd03300 149 PKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYE 220 (232)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHh
Confidence 2344433 2799999999999875 599999999999999999888764
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.1e-26 Score=253.60 Aligned_cols=176 Identities=31% Similarity=0.428 Sum_probs=136.9
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----------EcCeEEEEcc
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----------IRGTVAYVPQ 710 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----------~~~~iayv~Q 710 (1303)
++++|+++.|++ .++|+|+||++.+||+++|+||||||||||+++|+|+++|.+|.+.. .++.++|+||
T Consensus 1 i~i~~l~~~~~~-~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q 79 (237)
T TIGR00968 1 IEIANISKRFGS-FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQ 79 (237)
T ss_pred CEEEEEEEEECC-eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEec
Confidence 468999999975 46999999999999999999999999999999999999998874321 1356999999
Q ss_pred Ccccccc-cHHHHHccCCC---CCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-
Q 000746 711 ISWIFNA-TLRKNILFGSE---FDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN- 781 (1303)
Q Consensus 711 ~p~l~~~-TireNI~~g~~---~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~- 781 (1303)
+|.+|.+ |++||+.++.. .+. ++..++++..++.+. ......+||||||||++||||+..
T Consensus 80 ~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~lS~G~~qrl~laral~~~ 148 (237)
T TIGR00968 80 HYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGL-----------GDRYPNQLSGGQRQRVALARALAVE 148 (237)
T ss_pred ChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhH-----------hhCChhhCCHHHHHHHHHHHHHhcC
Confidence 9999965 99999987643 121 122233333333221 233446899999999999999642
Q ss_pred ----------------------HHHhHhc-C-CCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHh
Q 000746 782 ----------------------SCIKEEL-R-GKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 782 ----------------------~~i~~~~-~-~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
+.+.+.. + ++|+|++||+++.+. .||++++|++|++++.|+.+++.+
T Consensus 149 p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 220 (237)
T TIGR00968 149 PQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYD 220 (237)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHc
Confidence 2333332 2 799999999999865 599999999999999999998864
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.4e-26 Score=261.38 Aligned_cols=182 Identities=22% Similarity=0.357 Sum_probs=141.2
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCC-----CCCCceEE-------------
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELP-----PLKDASVV------------- 700 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~-----~~~g~~~~------------- 700 (1303)
..++++|+++.|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|.+..
T Consensus 44 ~~l~i~nl~~~~~~-~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~ 122 (305)
T PRK14264 44 AKLSVEDLDVYYGD-DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLV 122 (305)
T ss_pred ceEEEEEEEEEeCC-eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHH
Confidence 45899999999975 469999999999999999999999999999999999986 46764321
Q ss_pred -EcCeEEEEccCcccccccHHHHHccCCCC---------------C-----hhhHHHHHHHHhhHHHhhcCCCCCCcccc
Q 000746 701 -IRGTVAYVPQISWIFNATLRKNILFGSEF---------------D-----PAKYWKTVDVSALQHDLDLLPDRDLTEIG 759 (1303)
Q Consensus 701 -~~~~iayv~Q~p~l~~~TireNI~~g~~~---------------~-----~~~~~~vl~~~~l~~~i~~lp~g~~T~ig 759 (1303)
.++.++|++|++.+++.|++||+.++... + +++..++++.+++. ++..+...
T Consensus 123 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~~ 195 (305)
T PRK14264 123 ELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALW-------DEVNDRLD 195 (305)
T ss_pred HHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCc-------hhhhHHhc
Confidence 12469999999999999999999976321 0 11233333333332 22334456
Q ss_pred CCCCCCchHHHHHHHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCccc-ccCEE-EEEeC
Q 000746 760 ERGVNISGGQKQRVSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFLP-HVDRI-ILVSE 814 (1303)
Q Consensus 760 e~G~~LSGGQkQRiaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l~-~aD~i-i~l~~ 814 (1303)
....+||||||||++||||+.. +.+++..+++|+|++||+++.+. .||++ ++|++
T Consensus 196 ~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~~ 275 (305)
T PRK14264 196 DNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTG 275 (305)
T ss_pred CccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEecC
Confidence 7788999999999999999642 34445445689999999999975 59997 56799
Q ss_pred CEEEEecCHHHHHh
Q 000746 815 GMIKEEGSFEELSK 828 (1303)
Q Consensus 815 G~i~~~g~~~~l~~ 828 (1303)
|++++.|+++++.+
T Consensus 276 G~i~~~g~~~~~~~ 289 (305)
T PRK14264 276 GELVEYDDTDKIFE 289 (305)
T ss_pred CEEEEeCCHHHHHh
Confidence 99999999988764
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.7e-26 Score=255.52 Aligned_cols=176 Identities=23% Similarity=0.426 Sum_probs=137.9
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------EcCeEEEE
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------IRGTVAYV 708 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------~~~~iayv 708 (1303)
++++|++++|++ .++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. .++.++|+
T Consensus 3 l~~~~l~~~~~~-~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (255)
T PRK11231 3 LRTENLTVGYGT-KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALL 81 (255)
T ss_pred EEEEeEEEEECC-EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEe
Confidence 789999999974 47999999999999999999999999999999999999999874321 12359999
Q ss_pred ccCcccccc-cHHHHHccCCC-----C---C---hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHH
Q 000746 709 PQISWIFNA-TLRKNILFGSE-----F---D---PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMA 776 (1303)
Q Consensus 709 ~Q~p~l~~~-TireNI~~g~~-----~---~---~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLA 776 (1303)
+|++.++.+ |+.||+.++.. + + +++..++++..++.+. .......||||||||++||
T Consensus 82 ~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~la 150 (255)
T PRK11231 82 PQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHL-----------ADRRLTDLSGGQRQRAFLA 150 (255)
T ss_pred cccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHH-----------HcCCcccCCHHHHHHHHHH
Confidence 999988865 99999998631 1 1 1233344444444322 2234578999999999999
Q ss_pred HHHHH-----------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHh
Q 000746 777 RAVFN-----------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 777 RAl~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
||+.. +.+.+.. +++|+|++||+++.+. .+|++++|++|++++.|+++++..
T Consensus 151 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 151 MVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 99542 2333332 4789999999999865 699999999999999999988764
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=5e-26 Score=256.17 Aligned_cols=175 Identities=24% Similarity=0.362 Sum_probs=136.6
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE-------------cCeEEE
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI-------------RGTVAY 707 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~-------------~~~iay 707 (1303)
++++|+++.|++ .++|+|+||++++||+++|+|+||||||||+++|+|.++|++|.+ .+ ++.++|
T Consensus 2 l~~~~l~~~~~~-~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~~~~~~~~~~~~~i~~ 79 (256)
T TIGR03873 2 LRLSRVSWSAGG-RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTV-DLAGVDLHGLSRRARARRVAL 79 (256)
T ss_pred ceEEeEEEEECC-EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEE-EECCEEcccCCHHHHhhheEE
Confidence 678999999975 479999999999999999999999999999999999999998743 32 235999
Q ss_pred EccCcc-cccccHHHHHccCCC-C------C----hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHH
Q 000746 708 VPQISW-IFNATLRKNILFGSE-F------D----PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSM 775 (1303)
Q Consensus 708 v~Q~p~-l~~~TireNI~~g~~-~------~----~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaL 775 (1303)
++|++. .+..|++||+.++.. . . +++..++++..++.+ ........||||||||++|
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~l 148 (256)
T TIGR03873 80 VEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSH-----------LADRDMSTLSGGERQRVHV 148 (256)
T ss_pred ecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHh-----------hhcCCcccCCHHHHHHHHH
Confidence 999985 457899999987631 1 0 112333444333322 2233556899999999999
Q ss_pred HHHHHH-----------------------HHHhHhc-CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHHh
Q 000746 776 ARAVFN-----------------------SCIKEEL-RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 776 ARAl~~-----------------------~~i~~~~-~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
|||+.. +.+.+.. +++|+|++||+++.+ ..||+|++|++|++++.|+++++..
T Consensus 149 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 149 ARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 999532 2333332 478999999999998 5699999999999999999988754
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-26 Score=251.67 Aligned_cols=166 Identities=25% Similarity=0.418 Sum_probs=128.2
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE---------------EcCeE
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV---------------IRGTV 705 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~---------------~~~~i 705 (1303)
++++|+++.|+++.++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .++.+
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 80 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI 80 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHhe
Confidence 468999999975457999999999999999999999999999999999999998874321 12359
Q ss_pred EEEccCccccc-ccHHHHHccCCC---CCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHH
Q 000746 706 AYVPQISWIFN-ATLRKNILFGSE---FDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMAR 777 (1303)
Q Consensus 706 ayv~Q~p~l~~-~TireNI~~g~~---~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLAR 777 (1303)
+|++|+|.++. .|++||+.++.. .+. ++..+.++.+++++..+ ....+||||||||++|||
T Consensus 81 ~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~lar 149 (214)
T cd03292 81 GVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHR-----------ALPAELSGGEQQRVAIAR 149 (214)
T ss_pred EEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhh-----------CChhhcCHHHHHHHHHHH
Confidence 99999999886 599999987532 122 23344444444443222 234579999999999999
Q ss_pred HHHH-----------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEE
Q 000746 778 AVFN-----------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMI 817 (1303)
Q Consensus 778 Al~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i 817 (1303)
|++. +.+.+.. +++|+|++||+++.+. .||++++|++|++
T Consensus 150 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 150 AIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9642 2344432 4799999999999987 4899999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.3e-26 Score=256.94 Aligned_cols=182 Identities=23% Similarity=0.346 Sum_probs=141.9
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCC-----CCCCceEE--------------
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELP-----PLKDASVV-------------- 700 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~-----~~~g~~~~-------------- 700 (1303)
.++++|+++.|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|.+..
T Consensus 3 ~l~~~~v~~~~~~-~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~ 81 (250)
T PRK14266 3 RIEVENLNTYFDD-AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVE 81 (250)
T ss_pred EEEEEeEEEEeCC-eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHH
Confidence 3789999999974 469999999999999999999999999999999999864 36664321
Q ss_pred EcCeEEEEccCcccccccHHHHHccCCC----CCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHH
Q 000746 701 IRGTVAYVPQISWIFNATLRKNILFGSE----FDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQR 772 (1303)
Q Consensus 701 ~~~~iayv~Q~p~l~~~TireNI~~g~~----~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQR 772 (1303)
.++.++|+||+|++|+.|++||+.++.. .++ +++.+.++.+++.+++.. .....+.+||||||||
T Consensus 82 ~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~Gq~qr 154 (250)
T PRK14266 82 LRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKD-------KLDKSALGLSGGQQQR 154 (250)
T ss_pred HhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHH-------HHhCCcccCCHHHHHH
Confidence 1346999999999999999999987521 122 234445555565544332 1345677899999999
Q ss_pred HHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCcccc-cCEEEEEeCCEEEEecCHHHHHh
Q 000746 773 VSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFLPH-VDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 773 iaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l~~-aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
++||||+.. +.+.+..+++|+|++||+++.+.. +|++++|++|++++.|+++++..
T Consensus 155 v~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~~ 234 (250)
T PRK14266 155 LCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIFI 234 (250)
T ss_pred HHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHHh
Confidence 999999542 334444467899999999998655 89999999999999999998864
Q ss_pred c
Q 000746 829 H 829 (1303)
Q Consensus 829 ~ 829 (1303)
.
T Consensus 235 ~ 235 (250)
T PRK14266 235 N 235 (250)
T ss_pred C
Confidence 3
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.6e-26 Score=252.20 Aligned_cols=175 Identities=28% Similarity=0.454 Sum_probs=138.0
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE-----------cCeEEEEc
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI-----------RGTVAYVP 709 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~-----------~~~iayv~ 709 (1303)
++++|+++.|++ ++++|+||+|++||+++|+|+||||||||+++|.|.++|++|.+ .+ +..++|++
T Consensus 1 l~~~~l~~~~~~--~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v-~i~g~~~~~~~~~~~~i~~~~ 77 (235)
T cd03299 1 LKVENLSKDWKE--FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKI-LLNGKDITNLPPEKRDISYVP 77 (235)
T ss_pred CeeEeEEEEeCC--ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEE-EECCEEcCcCChhHcCEEEEe
Confidence 468999999974 38999999999999999999999999999999999999998743 32 24699999
Q ss_pred cCcccc-cccHHHHHccCCCC---Ch----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH
Q 000746 710 QISWIF-NATLRKNILFGSEF---DP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN 781 (1303)
Q Consensus 710 Q~p~l~-~~TireNI~~g~~~---~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~ 781 (1303)
|++.+| ..|++||+.++... +. ++..+.++.+++.+.++ ....+||||||||++||||++.
T Consensus 78 q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~laral~~ 146 (235)
T cd03299 78 QNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLN-----------RKPETLSGGEQQRVAIARALVV 146 (235)
T ss_pred ecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHh-----------cCcccCCHHHHHHHHHHHHHHc
Confidence 999988 47999999875321 11 22344455555544332 3346799999999999999642
Q ss_pred -----------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHhc
Q 000746 782 -----------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 782 -----------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
+.+++.. .++|+|++||+++.++ .||++++|++|++++.|+++++.+.
T Consensus 147 ~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 220 (235)
T cd03299 147 NPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220 (235)
T ss_pred CCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 2333332 2899999999999876 5999999999999999999887654
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.2e-26 Score=262.47 Aligned_cols=177 Identities=25% Similarity=0.385 Sum_probs=137.1
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-----------EcCeEEEE
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-----------IRGTVAYV 708 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-----------~~~~iayv 708 (1303)
.++++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+.. .+..++|+
T Consensus 4 ~i~~~~l~~~~~~-~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v 82 (303)
T TIGR01288 4 AIDLVGVSKSYGD-KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVV 82 (303)
T ss_pred EEEEEeEEEEeCC-eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEE
Confidence 5899999999975 46999999999999999999999999999999999999999875431 13569999
Q ss_pred ccCcccc-cccHHHHHccCC---CCChhhH----HHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHH
Q 000746 709 PQISWIF-NATLRKNILFGS---EFDPAKY----WKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF 780 (1303)
Q Consensus 709 ~Q~p~l~-~~TireNI~~g~---~~~~~~~----~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~ 780 (1303)
||++.++ +.|++||+.+.. ..++++. .+.++..+ +++..+ ....+||||||||++||||++
T Consensus 83 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~-------l~~~~~----~~~~~LSgG~~qrv~la~al~ 151 (303)
T TIGR01288 83 PQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFAR-------LESKAD----VRVALLSGGMKRRLTLARALI 151 (303)
T ss_pred eccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCC-------ChhHhc----CchhhCCHHHHHHHHHHHHHh
Confidence 9999888 569999997522 1232222 22222222 222223 334579999999999999954
Q ss_pred H-----------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHh
Q 000746 781 N-----------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 781 ~-----------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
. +.+.+.. +++|+|++||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 152 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 152 NDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 2 2333332 5899999999999875 599999999999999999998864
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-26 Score=249.59 Aligned_cols=168 Identities=23% Similarity=0.418 Sum_probs=130.0
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE---------cCeEEEEccC
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI---------RGTVAYVPQI 711 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~---------~~~iayv~Q~ 711 (1303)
++++|+++.|++ .++++|+||++++|++++|+||||||||||+++|+|+++|++|. +.+ +..++|++|+
T Consensus 1 l~~~~l~~~~~~-~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~i~~~~q~ 78 (210)
T cd03269 1 LEVENVTKRFGR-VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGE-VLFDGKPLDIAARNRIGYLPEE 78 (210)
T ss_pred CEEEEEEEEECC-EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCCchhHHHHccEEEeccC
Confidence 468999999964 46999999999999999999999999999999999999999874 433 3469999999
Q ss_pred ccccc-ccHHHHHccCCC---CCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH--
Q 000746 712 SWIFN-ATLRKNILFGSE---FDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN-- 781 (1303)
Q Consensus 712 p~l~~-~TireNI~~g~~---~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~-- 781 (1303)
+.++. .|++||+.++.. .+. ++..+.++..++. ........+||||||||++||||+..
T Consensus 79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrl~la~al~~~p 147 (210)
T cd03269 79 RGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELS-----------EYANKRVEELSKGNQQKVQFIAAVIHDP 147 (210)
T ss_pred CcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCh-----------HHHhCcHhhCCHHHHHHHHHHHHHhcCC
Confidence 99886 599999987432 111 1223333333332 23344567899999999999999542
Q ss_pred ---------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEec
Q 000746 782 ---------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEG 821 (1303)
Q Consensus 782 ---------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g 821 (1303)
+.+++.. +++|+|++||+++.+. .||++++|++|++++.|
T Consensus 148 ~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 148 ELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 2333332 4789999999999875 59999999999998754
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.7e-26 Score=257.62 Aligned_cols=177 Identities=25% Similarity=0.363 Sum_probs=137.3
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE--------------EcCeEE
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV--------------IRGTVA 706 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~--------------~~~~ia 706 (1303)
++++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|.|+++|++|.+.. .++.|+
T Consensus 2 l~~~~l~~~~~~-~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~ 80 (271)
T PRK13638 2 LATSDLWFRYQD-EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVA 80 (271)
T ss_pred eEEEEEEEEcCC-cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheE
Confidence 689999999974 46999999999999999999999999999999999999999874321 123599
Q ss_pred EEccCcc--cccccHHHHHccCC---CCChhh----HHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHH
Q 000746 707 YVPQISW--IFNATLRKNILFGS---EFDPAK----YWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMAR 777 (1303)
Q Consensus 707 yv~Q~p~--l~~~TireNI~~g~---~~~~~~----~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLAR 777 (1303)
|++|+|. ++..|+.||+.++. ..++++ ..++++..++.+. ......+||||||||++|||
T Consensus 81 ~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrl~lar 149 (271)
T PRK13638 81 TVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHF-----------RHQPIQCLSHGQKKRVAIAG 149 (271)
T ss_pred EEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhH-----------hcCCchhCCHHHHHHHHHHH
Confidence 9999985 56789999998742 122222 2333444444322 12345689999999999999
Q ss_pred HHHH-----------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHhc
Q 000746 778 AVFN-----------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 778 Al~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
|++. +.+.+.. +++|+|++||+++.+. .||++++|++|++++.|+++++...
T Consensus 150 aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 150 ALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9542 2333332 4789999999999874 5999999999999999999887654
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.3e-26 Score=253.09 Aligned_cols=182 Identities=24% Similarity=0.397 Sum_probs=137.4
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-------------EcCeEE
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-------------IRGTVA 706 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-------------~~~~ia 706 (1303)
.++++|+++.|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|.+.. .+..++
T Consensus 5 ~l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 83 (237)
T PRK11614 5 MLSFDKVSAHYGK-IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVA 83 (237)
T ss_pred EEEEEeEEEeeCC-ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEE
Confidence 5899999999974 47999999999999999999999999999999999999998874321 123599
Q ss_pred EEccCccccc-ccHHHHHccCCCC-ChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH---
Q 000746 707 YVPQISWIFN-ATLRKNILFGSEF-DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN--- 781 (1303)
Q Consensus 707 yv~Q~p~l~~-~TireNI~~g~~~-~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~--- 781 (1303)
|++|++.+|. .|++||+.++..+ +.++..+.++ +.++.++...+ ........||||||||++||||++.
T Consensus 84 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~l~~~~~l~~-~~~~~~~~LS~G~~qrl~la~al~~~p~ 157 (237)
T PRK11614 84 IVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIK-----WVYELFPRLHE-RRIQRAGTMSGGEQQMLAIGRALMSQPR 157 (237)
T ss_pred EeccCcccCCCCcHHHHHHHhhhccChhHHHHHHH-----HHHHHHHHHHH-HHhCchhhCCHHHHHHHHHHHHHHhCCC
Confidence 9999999987 5999999886432 2222222111 11111111111 1223456899999999999999642
Q ss_pred --------------------HHHhHhc-CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHHh
Q 000746 782 --------------------SCIKEEL-RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 782 --------------------~~i~~~~-~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
+.+.+.. +++|+|++||+++.+ ..||++++|++|++++.|+++++..
T Consensus 158 illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 158 LLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred EEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 2343332 489999999999865 5699999999999999999998864
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.5e-26 Score=265.83 Aligned_cols=175 Identities=28% Similarity=0.425 Sum_probs=138.2
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----------------EcCe
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----------------IRGT 704 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----------------~~~~ 704 (1303)
+++ |++++|++. .+ |+||++++||+++|+||||||||||+++|+|+++|++|.+.. .++.
T Consensus 2 l~~-~l~k~~~~~--~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 77 (352)
T PRK11144 2 LEL-NFKQQLGDL--CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRR 77 (352)
T ss_pred eEE-EEEEEeCCE--EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCC
Confidence 456 899999642 23 999999999999999999999999999999999998874321 1346
Q ss_pred EEEEccCccccc-ccHHHHHccCCC-CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-
Q 000746 705 VAYVPQISWIFN-ATLRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN- 781 (1303)
Q Consensus 705 iayv~Q~p~l~~-~TireNI~~g~~-~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~- 781 (1303)
++|++|++.+|. .|++|||.++.. .++++..++++..++.+..+ ....+||||||||++||||+..
T Consensus 78 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGq~qRvalaraL~~~ 146 (352)
T PRK11144 78 IGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLD-----------RYPGSLSGGEKQRVAIGRALLTA 146 (352)
T ss_pred EEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhh-----------CCcccCCHHHHHHHHHHHHHHcC
Confidence 999999999985 699999998743 33455566666665543333 3346899999999999999642
Q ss_pred ----------------------HHHhHhc--CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHHhcc
Q 000746 782 ----------------------SCIKEEL--RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELSKHG 830 (1303)
Q Consensus 782 ----------------------~~i~~~~--~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~~~~ 830 (1303)
+.+++.. .++|+|+|||+++.+ ..||+|++|++|++++.|+++++..+.
T Consensus 147 p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p 220 (352)
T PRK11144 147 PELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASS 220 (352)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCc
Confidence 2333333 278999999999876 569999999999999999999998654
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.8e-26 Score=254.95 Aligned_cols=183 Identities=19% Similarity=0.282 Sum_probs=144.0
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CCCceEE-------------
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP-----LKDASVV------------- 700 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~-----~~g~~~~------------- 700 (1303)
..+.+++.++.|.+ .++++|+||++++||+++|+|+||||||||+++|.|+++| .+|.+..
T Consensus 7 ~~~~~~~~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 85 (261)
T PRK14263 7 IVMDCKLDKIFYGN-FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV 85 (261)
T ss_pred ceEEEEeEEEEeCC-EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence 46889999999964 4799999999999999999999999999999999999986 5653211
Q ss_pred -EcCeEEEEccCcccccccHHHHHccCCC---CC---hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHH
Q 000746 701 -IRGTVAYVPQISWIFNATLRKNILFGSE---FD---PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRV 773 (1303)
Q Consensus 701 -~~~~iayv~Q~p~l~~~TireNI~~g~~---~~---~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRi 773 (1303)
.+..++|++|++.+|+.|++|||.++.. ++ +++..++++..++.+++.. ..++...+||||||||+
T Consensus 86 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~~qrv 158 (261)
T PRK14263 86 VVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-------KLKVSGLSLSGGQQQRL 158 (261)
T ss_pred hhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHHHHH
Confidence 1345999999999999999999998642 11 2345555665555443321 23456778999999999
Q ss_pred HHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCccc-ccCEEEEEe--------CCEEEEec
Q 000746 774 SMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFLP-HVDRIILVS--------EGMIKEEG 821 (1303)
Q Consensus 774 aLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~--------~G~i~~~g 821 (1303)
+||||++. +.+.+..+++|+|++||+++.+. .||+|++|+ +|++++.|
T Consensus 159 ~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g 238 (261)
T PRK14263 159 CIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMG 238 (261)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeC
Confidence 99999642 33444445789999999999865 699999996 89999999
Q ss_pred CHHHHHhc
Q 000746 822 SFEELSKH 829 (1303)
Q Consensus 822 ~~~~l~~~ 829 (1303)
+++++.+.
T Consensus 239 ~~~~~~~~ 246 (261)
T PRK14263 239 PTAQIFQN 246 (261)
T ss_pred CHHHHHhC
Confidence 99988653
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-25 Score=254.35 Aligned_cols=186 Identities=22% Similarity=0.321 Sum_probs=142.9
Q ss_pred CCCCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CCCceEE----------
Q 000746 636 PELPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP-----LKDASVV---------- 700 (1303)
Q Consensus 636 ~~~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~-----~~g~~~~---------- 700 (1303)
++...++++|+++.|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+++| .+|.+..
T Consensus 16 ~~~~~l~~~nl~~~~~~-~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~ 94 (274)
T PRK14265 16 PDHSVFEVEGVKVFYGG-FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQI 94 (274)
T ss_pred CCCceEEEeeEEEEeCC-eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccc
Confidence 34457999999999975 4699999999999999999999999999999999999863 4653211
Q ss_pred ----EcCeEEEEccCcccccccHHHHHccCCC---CC---hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHH
Q 000746 701 ----IRGTVAYVPQISWIFNATLRKNILFGSE---FD---PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQK 770 (1303)
Q Consensus 701 ----~~~~iayv~Q~p~l~~~TireNI~~g~~---~~---~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQk 770 (1303)
.++.|+|++|++.+++.|+.|||.++.. +. ++...+.++.+++.+.+. .........||||||
T Consensus 95 ~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgGq~ 167 (274)
T PRK14265 95 NSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVK-------DKLKEKGTALSGGQQ 167 (274)
T ss_pred hhHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhH-------HHhcCCcccCCHHHH
Confidence 1346999999999998899999987632 11 222333444444433221 123456678999999
Q ss_pred HHHHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCccc-ccCEEEEEe---------CCEE
Q 000746 771 QRVSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFLP-HVDRIILVS---------EGMI 817 (1303)
Q Consensus 771 QRiaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~---------~G~i 817 (1303)
||++||||++. +.+.+..+++|+|++||+++.+. .||++++|+ +|++
T Consensus 168 qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~ 247 (274)
T PRK14265 168 QRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKL 247 (274)
T ss_pred HHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceE
Confidence 99999999542 33444445789999999999875 699999997 8999
Q ss_pred EEecCHHHHHhc
Q 000746 818 KEEGSFEELSKH 829 (1303)
Q Consensus 818 ~~~g~~~~l~~~ 829 (1303)
++.|+.+++..+
T Consensus 248 ~~~g~~~~~~~~ 259 (274)
T PRK14265 248 VEFSPTEQMFGS 259 (274)
T ss_pred EEeCCHHHHHhC
Confidence 999999988643
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.2e-26 Score=255.02 Aligned_cols=177 Identities=20% Similarity=0.285 Sum_probs=139.3
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc-------------CeE
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR-------------GTV 705 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~-------------~~i 705 (1303)
..++++|++++|++ ..+|+|+||++++|++++|+||||||||||+++|+|+++|++|.+ .+. ..+
T Consensus 6 ~~l~i~~l~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~~~~~~~~~~~~~i 83 (265)
T PRK10253 6 ARLRGEQLTLGYGK-YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHV-WLDGEHIQHYASKEVARRI 83 (265)
T ss_pred cEEEEEEEEEEECC-EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEE-EECCEEhhhCCHHHHhhhe
Confidence 46899999999975 469999999999999999999999999999999999999988743 322 359
Q ss_pred EEEccCcccc-cccHHHHHccCC-CC-------C---hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHH
Q 000746 706 AYVPQISWIF-NATLRKNILFGS-EF-------D---PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRV 773 (1303)
Q Consensus 706 ayv~Q~p~l~-~~TireNI~~g~-~~-------~---~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRi 773 (1303)
+|++|++.++ +.|++||+.++. +. . +++..++++..++.+. ......+||||||||+
T Consensus 84 ~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~Gq~qrv 152 (265)
T PRK10253 84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHL-----------ADQSVDTLSGGQRQRA 152 (265)
T ss_pred EEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHH-----------hcCCcccCChHHHHHH
Confidence 9999999887 579999998752 11 1 1233444444444332 2345578999999999
Q ss_pred HHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHH
Q 000746 774 SMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELS 827 (1303)
Q Consensus 774 aLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~ 827 (1303)
+||||+.. +.+.+.. +++|+|++||+++.+ ..||++++|++|++++.|+++++.
T Consensus 153 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 153 WIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999542 2344432 378999999999976 569999999999999999998876
Q ss_pred h
Q 000746 828 K 828 (1303)
Q Consensus 828 ~ 828 (1303)
.
T Consensus 233 ~ 233 (265)
T PRK10253 233 T 233 (265)
T ss_pred h
Confidence 4
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-25 Score=253.75 Aligned_cols=185 Identities=21% Similarity=0.344 Sum_probs=138.6
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE--------------cCeE
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI--------------RGTV 705 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~--------------~~~i 705 (1303)
.++++|+++.|++ .++|+|+||++++|++++|+||||||||||+++|.|+++|++|.+ .+ +..+
T Consensus 5 ~l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~~~~~~i 82 (255)
T PRK11300 5 LLSVSGLMMRFGG-LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTI-LLRGQHIEGLPGHQIARMGV 82 (255)
T ss_pred eEEEeeEEEEECC-EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceE-EECCEECCCCCHHHHHhcCe
Confidence 5899999999964 479999999999999999999999999999999999999998743 22 2248
Q ss_pred EEEccCcccccc-cHHHHHccCCC-----------CChhhHHH--HHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHH
Q 000746 706 AYVPQISWIFNA-TLRKNILFGSE-----------FDPAKYWK--TVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQ 771 (1303)
Q Consensus 706 ayv~Q~p~l~~~-TireNI~~g~~-----------~~~~~~~~--vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQ 771 (1303)
+|++|+|.++.. |++||+.++.. ++...+.+ .-......+.++.+ |..........+|||||||
T Consensus 83 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LS~G~~q 160 (255)
T PRK11300 83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERV--GLLEHANRQAGNLAYGQQR 160 (255)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhC--ChhhhhhCChhhCCHHHHH
Confidence 999999999875 99999997531 00000000 00000112223332 3334455667889999999
Q ss_pred HHHHHHHHHH-----------------------HHHhHhc-C-CCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHH
Q 000746 772 RVSMARAVFN-----------------------SCIKEEL-R-GKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEE 825 (1303)
Q Consensus 772 RiaLARAl~~-----------------------~~i~~~~-~-~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~ 825 (1303)
|++||||++. +.+.+.. + ++|+|++||+++.+. .||++++|++|++++.|++++
T Consensus 161 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 240 (255)
T PRK11300 161 RLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEE 240 (255)
T ss_pred HHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHHH
Confidence 9999999542 2333332 2 789999999999975 599999999999999999988
Q ss_pred HHh
Q 000746 826 LSK 828 (1303)
Q Consensus 826 l~~ 828 (1303)
+..
T Consensus 241 ~~~ 243 (255)
T PRK11300 241 IRN 243 (255)
T ss_pred Hhh
Confidence 754
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.1e-26 Score=246.85 Aligned_cols=168 Identities=28% Similarity=0.449 Sum_probs=131.4
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----------EcCeEEEEcc
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----------IRGTVAYVPQ 710 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----------~~~~iayv~Q 710 (1303)
++++|+++.|+. .++|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .++.++|++|
T Consensus 1 ~~~~~l~~~~~~---~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q 77 (213)
T TIGR01277 1 LALDKVRYEYEH---LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQ 77 (213)
T ss_pred CeEEeeeEEeCC---cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEec
Confidence 368999999963 568999999999999999999999999999999999999874321 1346999999
Q ss_pred Cccccc-ccHHHHHccCC-C-C-----ChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-
Q 000746 711 ISWIFN-ATLRKNILFGS-E-F-----DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN- 781 (1303)
Q Consensus 711 ~p~l~~-~TireNI~~g~-~-~-----~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~- 781 (1303)
+|.+|. .|++||+.++. + . ++++..++++..++.+.....| .+||||||||++||||+..
T Consensus 78 ~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~laral~~~ 146 (213)
T TIGR01277 78 ENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP-----------EQLSGGQRQRVALARCLVRP 146 (213)
T ss_pred cCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCc-----------ccCCHHHHHHHHHHHHHhcC
Confidence 999886 59999998642 1 1 1234555666666654433333 4799999999999999542
Q ss_pred ----------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecC
Q 000746 782 ----------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGS 822 (1303)
Q Consensus 782 ----------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~ 822 (1303)
+.+.+.. .++|+|++||+++.+. .||++++|++|++.+.|.
T Consensus 147 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 147 NPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 2334433 3789999999999875 599999999999998874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.9e-26 Score=250.75 Aligned_cols=168 Identities=20% Similarity=0.320 Sum_probs=128.9
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE---------------EcCeE
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV---------------IRGTV 705 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~---------------~~~~i 705 (1303)
++++|+++.|+++.++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .++.+
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 81 (222)
T PRK10908 2 IRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQI 81 (222)
T ss_pred EEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhhe
Confidence 689999999954457999999999999999999999999999999999999999875321 12469
Q ss_pred EEEccCccc-ccccHHHHHccCC---CCChhh----HHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHH
Q 000746 706 AYVPQISWI-FNATLRKNILFGS---EFDPAK----YWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMAR 777 (1303)
Q Consensus 706 ayv~Q~p~l-~~~TireNI~~g~---~~~~~~----~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLAR 777 (1303)
+|++|+|.+ ++.|++||+.++. ..++++ ..+.++..++.++ ......+||||||||++|||
T Consensus 82 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~lar 150 (222)
T PRK10908 82 GMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDK-----------AKNFPIQLSGGEQQRVGIAR 150 (222)
T ss_pred EEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhh-----------hhCCchhCCHHHHHHHHHHH
Confidence 999999987 4789999998753 122222 2233333333322 22345689999999999999
Q ss_pred HHHH-----------------------HHHhHhc-CCCEEEEEecCCCcccc-cCEEEEEeCCEEEE
Q 000746 778 AVFN-----------------------SCIKEEL-RGKTRILVTNQLHFLPH-VDRIILVSEGMIKE 819 (1303)
Q Consensus 778 Al~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~~-aD~ii~l~~G~i~~ 819 (1303)
|++. +.+.+.. +++|+|++||+++.+.. ||+|++|++|+++.
T Consensus 151 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 151 AVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 9542 2333332 47899999999999865 89999999999853
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.4e-26 Score=262.79 Aligned_cols=182 Identities=24% Similarity=0.365 Sum_probs=138.7
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-----------EcCeEEE
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-----------IRGTVAY 707 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-----------~~~~iay 707 (1303)
..|+++|++++|++ ..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+.. .+..|+|
T Consensus 40 ~~i~i~nl~k~y~~-~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~ 118 (340)
T PRK13536 40 VAIDLAGVSKSYGD-KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGV 118 (340)
T ss_pred eeEEEEEEEEEECC-EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEE
Confidence 35999999999974 36999999999999999999999999999999999999999874321 1346999
Q ss_pred EccCcccc-cccHHHHHccCCC---CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH--
Q 000746 708 VPQISWIF-NATLRKNILFGSE---FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN-- 781 (1303)
Q Consensus 708 v~Q~p~l~-~~TireNI~~g~~---~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~-- 781 (1303)
+||++.++ +.|++||+.+... .+.++..+.++ .+.+. -.+++..++. ..+||||||||++||||+..
T Consensus 119 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~--~ll~~-~~L~~~~~~~----~~~LS~G~kqrv~lA~aL~~~P 191 (340)
T PRK13536 119 VPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIP--SLLEF-ARLESKADAR----VSDLSGGMKRRLTLARALINDP 191 (340)
T ss_pred EeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHH--HHHHH-cCCchhhCCC----hhhCCHHHHHHHHHHHHHhcCC
Confidence 99999986 6799999985321 22222221111 11121 1233333333 35799999999999999642
Q ss_pred ---------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHh
Q 000746 782 ---------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 782 ---------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
+.+.+.. +|+|+|++||+++.+. .||+|++|++|+++..|+++++.+
T Consensus 192 ~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 192 QLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 2343332 4899999999999985 599999999999999999999864
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.1e-26 Score=261.13 Aligned_cols=190 Identities=18% Similarity=0.263 Sum_probs=141.1
Q ss_pred CcEEEEeeEEEeCC---------CCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE---------
Q 000746 639 PAVSIKNGNFSWDS---------KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV--------- 700 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~---------~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~--------- 700 (1303)
+.++++|+++.|+. ..++++||||+|++||+++|+|+||||||||+++|+|+++|++|.+..
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~ 83 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKAD 83 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCC
Confidence 35899999999963 136899999999999999999999999999999999999998874321
Q ss_pred ------EcCeEEEEccCcc--cc-cccHHHHHccC----CCCCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCC
Q 000746 701 ------IRGTVAYVPQISW--IF-NATLRKNILFG----SEFDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGV 763 (1303)
Q Consensus 701 ------~~~~iayv~Q~p~--l~-~~TireNI~~g----~~~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~ 763 (1303)
.+++|+||+|+|. +. ..|+.+|+... ...+. ++..+.++.+++.++ .. .....
T Consensus 84 ~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~------~~----~~~p~ 153 (327)
T PRK11308 84 PEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPE------HY----DRYPH 153 (327)
T ss_pred HHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChH------Hh----cCCCc
Confidence 1357999999994 44 35999998632 11222 233444444444221 11 23456
Q ss_pred CCchHHHHHHHHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEE
Q 000746 764 NISGGQKQRVSMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMI 817 (1303)
Q Consensus 764 ~LSGGQkQRiaLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i 817 (1303)
.||||||||++||||+.. +.+.+.. .+.|+|+|||+++.+. .||+|++|++|+|
T Consensus 154 ~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~i 233 (327)
T PRK11308 154 MFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRC 233 (327)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 899999999999999642 2233332 3789999999999986 5999999999999
Q ss_pred EEecCHHHHHhcc--hHHHHHHH
Q 000746 818 KEEGSFEELSKHG--RLFQKLME 838 (1303)
Q Consensus 818 ~~~g~~~~l~~~~--~~~~~l~~ 838 (1303)
++.|+.+++.++. .+.+.++.
T Consensus 234 ve~g~~~~~~~~p~hpyt~~ll~ 256 (327)
T PRK11308 234 VEKGTKEQIFNNPRHPYTQALLS 256 (327)
T ss_pred EEECCHHHHhcCCCCHHHHHHHH
Confidence 9999999998653 33344443
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.4e-26 Score=260.45 Aligned_cols=177 Identities=23% Similarity=0.411 Sum_probs=139.3
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-----------EcCeEEEEc
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-----------IRGTVAYVP 709 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-----------~~~~iayv~ 709 (1303)
++++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. .++.++|+|
T Consensus 3 l~~~~l~~~~~~-~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~ 81 (301)
T TIGR03522 3 IRVSSLTKLYGT-QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLP 81 (301)
T ss_pred EEEEEEEEEECC-EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEec
Confidence 789999999964 46999999999999999999999999999999999999999874321 134699999
Q ss_pred cCcccccc-cHHHHHccCCC---CCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH
Q 000746 710 QISWIFNA-TLRKNILFGSE---FDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN 781 (1303)
Q Consensus 710 Q~p~l~~~-TireNI~~g~~---~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~ 781 (1303)
|+|.++.. |++||+.+... .+. ++..++++..++. ........+||||||||++||||++.
T Consensus 82 q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LS~G~~qrv~la~al~~ 150 (301)
T TIGR03522 82 EHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLR-----------PEQHKKIGQLSKGYRQRVGLAQALIH 150 (301)
T ss_pred CCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-----------hHhcCchhhCCHHHHHHHHHHHHHhc
Confidence 99999865 99999976331 121 2233333333332 22344567899999999999999642
Q ss_pred -----------------------HHHhHhcCCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHhc
Q 000746 782 -----------------------SCIKEELRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 782 -----------------------~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
+.+.+..+++|+|++||+++.+. .||+|++|++|+++..|+.+++.+.
T Consensus 151 ~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 151 DPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 34444446799999999999875 5999999999999999999998653
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-25 Score=254.02 Aligned_cols=181 Identities=22% Similarity=0.314 Sum_probs=140.2
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CCCceEE--------------
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP-----LKDASVV-------------- 700 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~-----~~g~~~~-------------- 700 (1303)
.++++|+++.|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|.+..
T Consensus 7 ~l~~~~l~~~~~~-~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 85 (259)
T PRK14260 7 AIKVKDLSFYYNT-SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININR 85 (259)
T ss_pred eEEEEEEEEEECC-eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHh
Confidence 6899999999974 4699999999999999999999999999999999999885 3553221
Q ss_pred EcCeEEEEccCcccccccHHHHHccCCC----CCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHH
Q 000746 701 IRGTVAYVPQISWIFNATLRKNILFGSE----FDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQR 772 (1303)
Q Consensus 701 ~~~~iayv~Q~p~l~~~TireNI~~g~~----~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQR 772 (1303)
.+..++|++|++.+|+.|++||+.++.. +++ ++..++++.+++.+++. ......+..||||||||
T Consensus 86 ~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~qr 158 (259)
T PRK14260 86 LRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVK-------DKLNKSALGLSGGQQQR 158 (259)
T ss_pred hhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhh-------hHhcCCcccCCHHHHHH
Confidence 1246999999999999999999987521 122 22334455444433322 12345667899999999
Q ss_pred HHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCccc-ccCEEEEEe-----CCEEEEecCH
Q 000746 773 VSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFLP-HVDRIILVS-----EGMIKEEGSF 823 (1303)
Q Consensus 773 iaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~-----~G~i~~~g~~ 823 (1303)
++||||++. +.+.+..+++|+|++||+++.+. .||++++|+ +|++++.|++
T Consensus 159 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~ 238 (259)
T PRK14260 159 LCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVT 238 (259)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeCCH
Confidence 999999642 33444445789999999999875 599999997 5999999999
Q ss_pred HHHHh
Q 000746 824 EELSK 828 (1303)
Q Consensus 824 ~~l~~ 828 (1303)
+++.+
T Consensus 239 ~~~~~ 243 (259)
T PRK14260 239 TQIFS 243 (259)
T ss_pred HHHhc
Confidence 98864
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-25 Score=248.48 Aligned_cols=172 Identities=23% Similarity=0.362 Sum_probs=136.8
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc---------CeEEEEccC
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR---------GTVAYVPQI 711 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~---------~~iayv~Q~ 711 (1303)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+ .+. ..++|++|+
T Consensus 1 l~l~~v~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~~~~~~~~~~~~~~~~~q~ 78 (223)
T TIGR03740 1 LETKNLSKRFGK-QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEI-IFDGHPWTRKDLHKIGSLIES 78 (223)
T ss_pred CEEEeEEEEECC-EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEeccccccccEEEEcCC
Confidence 468999999975 479999999999999999999999999999999999999998753 322 369999999
Q ss_pred ccccc-ccHHHHHccCC---CCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH------
Q 000746 712 SWIFN-ATLRKNILFGS---EFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN------ 781 (1303)
Q Consensus 712 p~l~~-~TireNI~~g~---~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~------ 781 (1303)
+.++. .|++||+.++. ..++++..+.++..++++.. .....+||||||||++||||+..
T Consensus 79 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~~rv~laral~~~p~lll 147 (223)
T TIGR03740 79 PPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTG-----------KKKAKQFSLGMKQRLGIAIALLNHPKLLI 147 (223)
T ss_pred CCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHH-----------hhhHhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 98875 69999998643 23444555555555554322 23346799999999999999542
Q ss_pred -----------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHH
Q 000746 782 -----------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEE 825 (1303)
Q Consensus 782 -----------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~ 825 (1303)
+.+.+.. +++|+|++||+++.+. .||+|++|++|++++.|+.++
T Consensus 148 lDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 148 LDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred ECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 3344332 4789999999999875 699999999999999998764
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-25 Score=248.90 Aligned_cols=183 Identities=24% Similarity=0.393 Sum_probs=145.1
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc--CeEEEEccCccccc-
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR--GTVAYVPQISWIFN- 716 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~--~~iayv~Q~p~l~~- 716 (1303)
.++++|+++.|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++|.+|. +.+. ..++|++|++.++.
T Consensus 4 ~l~~~~l~~~~~~-~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~-i~~~~~~~i~~v~q~~~~~~~ 81 (251)
T PRK09544 4 LVSLENVSVSFGQ-RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGV-IKRNGKLRIGYVPQKLYLDTT 81 (251)
T ss_pred EEEEeceEEEECC-ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCccCEEEeccccccccc
Confidence 5899999999975 46999999999999999999999999999999999999999874 4454 36999999998764
Q ss_pred --ccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-------------
Q 000746 717 --ATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN------------- 781 (1303)
Q Consensus 717 --~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~------------- 781 (1303)
.|+++|+.+....++++..++++.+++.+.++ .....||||||||++||||+..
T Consensus 82 l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~ 150 (251)
T PRK09544 82 LPLTVNRFLRLRPGTKKEDILPALKRVQAGHLID-----------APMQKLSGGETQRVLLARALLNRPQLLVLDEPTQG 150 (251)
T ss_pred cChhHHHHHhccccccHHHHHHHHHHcCChHHHh-----------CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 48999987654445666777777777765432 2346799999999999999642
Q ss_pred ----------HHHhHhc-C-CCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHHhcchHHHHHH
Q 000746 782 ----------SCIKEEL-R-GKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLM 837 (1303)
Q Consensus 782 ----------~~i~~~~-~-~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~ 837 (1303)
+.+.+.. + ++|+|++||+++.+ ..||+|++|++ ++++.|+++++.. .+.+.+++
T Consensus 151 LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~-~~~~~~~~ 217 (251)
T PRK09544 151 VDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL-HPEFISMF 217 (251)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC-CHHHHHHh
Confidence 2333332 2 78999999999997 56999999965 7999999998864 33444443
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-25 Score=251.95 Aligned_cols=184 Identities=21% Similarity=0.304 Sum_probs=141.3
Q ss_pred CCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCc-----eEE------------
Q 000746 638 LPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDA-----SVV------------ 700 (1303)
Q Consensus 638 ~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~-----~~~------------ 700 (1303)
.+.+.++|++++|++ .++++|+||++++||+++|+|+||||||||+++|.|+++|.+|. .+.
T Consensus 8 ~~~i~~~~~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 8 EDVFNISRLYLYIND-KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred hhheeeeeEEEecCC-ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 356999999999975 46999999999999999999999999999999999999998862 221
Q ss_pred -EcCeEEEEccCcccccc-cHHHHHccCCC---C-ChhhHH----HHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHH
Q 000746 701 -IRGTVAYVPQISWIFNA-TLRKNILFGSE---F-DPAKYW----KTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQK 770 (1303)
Q Consensus 701 -~~~~iayv~Q~p~l~~~-TireNI~~g~~---~-~~~~~~----~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQk 770 (1303)
.+..++|++|+|.++.+ |++||+.++.. + +++..+ ++++..++.+.+ .......+..||||||
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~LS~G~~ 159 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEV-------YDRLNSPASQLSGGQQ 159 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccc-------hhhhcCCcccCCHHHH
Confidence 13569999999999865 99999997532 2 222222 222222221111 1223456778999999
Q ss_pred HHHHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHH
Q 000746 771 QRVSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEEL 826 (1303)
Q Consensus 771 QRiaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l 826 (1303)
||++||||++. +.+.+..+++|+|++||+++.+ ..||++++|++|++++.|+++++
T Consensus 160 qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~ 239 (257)
T PRK14246 160 QRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239 (257)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999542 3344444579999999999998 56999999999999999999988
Q ss_pred Hhc
Q 000746 827 SKH 829 (1303)
Q Consensus 827 ~~~ 829 (1303)
.+.
T Consensus 240 ~~~ 242 (257)
T PRK14246 240 FTS 242 (257)
T ss_pred HhC
Confidence 654
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-25 Score=252.16 Aligned_cols=170 Identities=24% Similarity=0.373 Sum_probs=132.6
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc--------CeEEEEccCc
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR--------GTVAYVPQIS 712 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~--------~~iayv~Q~p 712 (1303)
++++|+++.|++ .++++|+||+|++|++++|+||||||||||+++|+|+++|++|. +.++ ..++|++|++
T Consensus 2 l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~~v~q~~ 79 (255)
T PRK11248 2 LQISHLYADYGG-KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGS-ITLDGKPVEGPGAERGVVFQNE 79 (255)
T ss_pred EEEEEEEEEeCC-eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcE-EEECCEECCCCCCcEEEEeCCC
Confidence 689999999975 47999999999999999999999999999999999999999874 4332 3589999999
Q ss_pred cccc-ccHHHHHccCCC---CCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH---
Q 000746 713 WIFN-ATLRKNILFGSE---FDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN--- 781 (1303)
Q Consensus 713 ~l~~-~TireNI~~g~~---~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~--- 781 (1303)
.++. .|++||+.++.. .+. ++..+.++..++.+. ......+||||||||++||||++.
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGq~qrl~laral~~~p~ 148 (255)
T PRK11248 80 GLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGA-----------EKRYIWQLSGGQRQRVGIARALAANPQ 148 (255)
T ss_pred ccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhH-----------hhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9886 699999987532 222 223334444443322 233557899999999999999642
Q ss_pred --------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEe--CCEEEEecCH
Q 000746 782 --------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVS--EGMIKEEGSF 823 (1303)
Q Consensus 782 --------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~--~G~i~~~g~~ 823 (1303)
+.+.+.. .++|+|++||+++.+. .||+|++|+ +|++++.++.
T Consensus 149 lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 149 LLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 2344432 3799999999999874 599999998 5999988764
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-25 Score=252.28 Aligned_cols=182 Identities=25% Similarity=0.356 Sum_probs=137.1
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCC-----CCceEE--------------
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPL-----KDASVV-------------- 700 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~-----~g~~~~-------------- 700 (1303)
.++++|+++.|++ .++++|+||+|++||+++|+|+||||||||+++|.|+++|. +|.+..
T Consensus 4 ~l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 82 (252)
T PRK14272 4 LLSAQDVNIYYGD-KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVA 82 (252)
T ss_pred EEEEeeeEEEECC-EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHH
Confidence 4789999999974 47999999999999999999999999999999999999764 553211
Q ss_pred EcCeEEEEccCccccc-ccHHHHHccCCC---C-ChhhHHHH----HHHHhhHHHhhcCCCCCCccccCCCCCCchHHHH
Q 000746 701 IRGTVAYVPQISWIFN-ATLRKNILFGSE---F-DPAKYWKT----VDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQ 771 (1303)
Q Consensus 701 ~~~~iayv~Q~p~l~~-~TireNI~~g~~---~-~~~~~~~v----l~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQ 771 (1303)
.+..++|++|++.++. .|++||+.++.. . .+++..+. ++..++.+. +++. ......+|||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---l~~~----~~~~~~~LS~G~~q 155 (252)
T PRK14272 83 MRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDE---VKDR----LKTPATGLSGGQQQ 155 (252)
T ss_pred hhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchh---hhhh----hcCCcccCCHHHHH
Confidence 1346999999999887 599999986532 1 22222221 222222111 1111 23446789999999
Q ss_pred HHHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHH
Q 000746 772 RVSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELS 827 (1303)
Q Consensus 772 RiaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~ 827 (1303)
|++||||+.. +.+++..+++|+|++||+++.+. .||++++|++|++++.|+++++.
T Consensus 156 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 156 RLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999542 33444445799999999999887 59999999999999999999886
Q ss_pred hc
Q 000746 828 KH 829 (1303)
Q Consensus 828 ~~ 829 (1303)
.+
T Consensus 236 ~~ 237 (252)
T PRK14272 236 TN 237 (252)
T ss_pred hC
Confidence 54
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.5e-26 Score=249.14 Aligned_cols=164 Identities=33% Similarity=0.507 Sum_probs=125.1
Q ss_pred EEEeeEEEeCCC-CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------EcCeEEEE
Q 000746 642 SIKNGNFSWDSK-SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------IRGTVAYV 708 (1303)
Q Consensus 642 ~~~~~~f~~~~~-~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------~~~~iayv 708 (1303)
+++|+++.|++. .++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..|+|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 368999999752 46999999999999999999999999999999999999999875321 12469999
Q ss_pred ccCcc--cccccHHHHHccCCC---CChh----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHH
Q 000746 709 PQISW--IFNATLRKNILFGSE---FDPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAV 779 (1303)
Q Consensus 709 ~Q~p~--l~~~TireNI~~g~~---~~~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl 779 (1303)
+|++. +++.|++||+.++.. .+++ +..+.++..++.+. ......+||||||||++||||+
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~laral 149 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGL-----------RDRSPFTLSGGQKQRVAIAGVL 149 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhh-----------hcCCcccCCHHHHHHHHHHHHH
Confidence 99983 678899999987532 2222 22334444344322 2344578999999999999995
Q ss_pred HH-----------------------HHHhHhc-CCCEEEEEecCCCcccc-cCEEEEEeCCE
Q 000746 780 FN-----------------------SCIKEEL-RGKTRILVTNQLHFLPH-VDRIILVSEGM 816 (1303)
Q Consensus 780 ~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~~-aD~ii~l~~G~ 816 (1303)
+. +.+.+.. +++|+|++||+++.+.. ||+|++|++|+
T Consensus 150 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 150 AMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 42 2333333 47899999999998876 99999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-25 Score=251.93 Aligned_cols=183 Identities=22% Similarity=0.309 Sum_probs=138.7
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCC--C---CCCceEE-------------
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELP--P---LKDASVV------------- 700 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~--~---~~g~~~~------------- 700 (1303)
..++++|+++.|++ .++|+|+||+|++||+++|+|+||||||||+++|.|..+ | ++|.+..
T Consensus 4 ~~l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14255 4 KIITSSDVHLFYGK-FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVV 82 (252)
T ss_pred ceEEEEeEEEEECC-eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHH
Confidence 35899999999975 479999999999999999999999999999999999864 4 3553211
Q ss_pred -EcCeEEEEccCcccccccHHHHHccCCC---C-Chh----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHH
Q 000746 701 -IRGTVAYVPQISWIFNATLRKNILFGSE---F-DPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQ 771 (1303)
Q Consensus 701 -~~~~iayv~Q~p~l~~~TireNI~~g~~---~-~~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQ 771 (1303)
.+..++|++|++.+++.|++||+.++.. . .++ +..+.++.+++.. +..........+|||||||
T Consensus 83 ~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~i~~~~~~~~~~LS~Gq~q 155 (252)
T PRK14255 83 QLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWD-------EVKDHLHESALSLSGGQQQ 155 (252)
T ss_pred HhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCcc-------chhhHHhcCcccCCHHHHH
Confidence 1346999999999999999999987521 1 111 2222233333221 1122345566789999999
Q ss_pred HHHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHH
Q 000746 772 RVSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELS 827 (1303)
Q Consensus 772 RiaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~ 827 (1303)
|++||||++. +.+.+..+++|+|+|||+++.+. .||+|++|++|++++.|+..+..
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 156 RVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999642 23444445689999999999975 59999999999999999988876
Q ss_pred hc
Q 000746 828 KH 829 (1303)
Q Consensus 828 ~~ 829 (1303)
.+
T Consensus 236 ~~ 237 (252)
T PRK14255 236 LN 237 (252)
T ss_pred cC
Confidence 43
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.6e-26 Score=238.31 Aligned_cols=136 Identities=32% Similarity=0.624 Sum_probs=117.1
Q ss_pred EEEEeeEEEeCCC-CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------EcCeEEE
Q 000746 641 VSIKNGNFSWDSK-SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------IRGTVAY 707 (1303)
Q Consensus 641 i~~~~~~f~~~~~-~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------~~~~iay 707 (1303)
++++|++++|++. .++++|+||++++||+++|+||||||||||+++|+|+++|.+|.... .++.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 4689999999753 36999999999999999999999999999999999999999874321 1346999
Q ss_pred EccCcccccccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH------
Q 000746 708 VPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN------ 781 (1303)
Q Consensus 708 v~Q~p~l~~~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~------ 781 (1303)
++|+|++++.|++||+ ||||||||++||||++.
T Consensus 81 ~~q~~~~~~~tv~~~l-----------------------------------------LS~G~~qrv~la~al~~~p~~ll 119 (173)
T cd03246 81 LPQDDELFSGSIAENI-----------------------------------------LSGGQRQRLGLARALYGNPRILV 119 (173)
T ss_pred ECCCCccccCcHHHHC-----------------------------------------cCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999998 99999999999999542
Q ss_pred -----------------HHHhHhc-CCCEEEEEecCCCcccccCEEEEEeCCEE
Q 000746 782 -----------------SCIKEEL-RGKTRILVTNQLHFLPHVDRIILVSEGMI 817 (1303)
Q Consensus 782 -----------------~~i~~~~-~~~TvilvtH~~~~l~~aD~ii~l~~G~i 817 (1303)
+.+++.. +++|+|++||+++.+..||++++|++|++
T Consensus 120 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 120 LDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 2333332 47899999999999889999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-25 Score=250.97 Aligned_cols=179 Identities=25% Similarity=0.381 Sum_probs=139.2
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCC----CCCceEEE-----------cCe
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP----LKDASVVI-----------RGT 704 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~----~~g~~~~~-----------~~~ 704 (1303)
.++++|++++| + .++|+|+||++++||+++|+|+||||||||+++|+|+.+| ++|.+ .+ ++.
T Consensus 4 ~l~~~~l~~~~-~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i-~~~g~~i~~~~~~~~~ 80 (254)
T PRK10418 4 QIELRNIALQA-A-QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRV-LLDGKPVAPCALRGRK 80 (254)
T ss_pred EEEEeCeEEEe-c-cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEE-EECCeeccccccccce
Confidence 58999999999 3 4799999999999999999999999999999999999998 77743 22 246
Q ss_pred EEEEccCcc-ccc--ccHHHHHcc-----CCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHH
Q 000746 705 VAYVPQISW-IFN--ATLRKNILF-----GSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMA 776 (1303)
Q Consensus 705 iayv~Q~p~-l~~--~TireNI~~-----g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLA 776 (1303)
++|++|++. .|+ .|+.+|+.+ +.+.+++++.+.++.+++.+. ++.++....+||||||||++||
T Consensus 81 i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~qrv~la 152 (254)
T PRK10418 81 IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGMLQRMMIA 152 (254)
T ss_pred EEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHHHHHHHH
Confidence 999999984 443 588888753 222233455555555444221 1245566788999999999999
Q ss_pred HHHHH-----------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHhc
Q 000746 777 RAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 777 RAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
||+.. +.+++.. .++|+|++||+++.+. .||++++|++|++++.|+.+++.+.
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 231 (254)
T PRK10418 153 LALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNA 231 (254)
T ss_pred HHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 99532 3344432 3789999999999875 6999999999999999999988654
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-25 Score=253.53 Aligned_cols=175 Identities=21% Similarity=0.392 Sum_probs=136.7
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCC--------CCceEEEc----------
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPL--------KDASVVIR---------- 702 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~--------~g~~~~~~---------- 702 (1303)
++++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|. +|. +.+.
T Consensus 2 l~~~nl~~~~~~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~-i~~~g~~~~~~~~~ 79 (272)
T PRK13547 2 LTADHLHVARRH-RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGD-VTLNGEPLAAIDAP 79 (272)
T ss_pred eEEEEEEEEECC-EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceE-EEECCEEcccCCHH
Confidence 689999999964 47999999999999999999999999999999999999987 663 3332
Q ss_pred ---CeEEEEccCcc-cccccHHHHHccCCC-C-------Ch---hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCch
Q 000746 703 ---GTVAYVPQISW-IFNATLRKNILFGSE-F-------DP---AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISG 767 (1303)
Q Consensus 703 ---~~iayv~Q~p~-l~~~TireNI~~g~~-~-------~~---~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSG 767 (1303)
+.++|++|++. +++.|++||+.++.. . .+ ++.+++++..+ ..+..+....+|||
T Consensus 80 ~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSg 148 (272)
T PRK13547 80 RLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAG-----------ATALVGRDVTTLSG 148 (272)
T ss_pred HHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcC-----------cHhhhcCCcccCCH
Confidence 24899999986 578899999987531 1 11 12223333332 33445566788999
Q ss_pred HHHHHHHHHHHHHH---------H-----------------------HHhHhc-C-CCEEEEEecCCCccc-ccCEEEEE
Q 000746 768 GQKQRVSMARAVFN---------S-----------------------CIKEEL-R-GKTRILVTNQLHFLP-HVDRIILV 812 (1303)
Q Consensus 768 GQkQRiaLARAl~~---------~-----------------------~i~~~~-~-~~TvilvtH~~~~l~-~aD~ii~l 812 (1303)
|||||++||||++. + .+.+.. + ++|+|++||+++.+. .||++++|
T Consensus 149 G~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l 228 (272)
T PRK13547 149 GELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAML 228 (272)
T ss_pred HHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence 99999999999982 1 223332 2 789999999999875 69999999
Q ss_pred eCCEEEEecCHHHHHh
Q 000746 813 SEGMIKEEGSFEELSK 828 (1303)
Q Consensus 813 ~~G~i~~~g~~~~l~~ 828 (1303)
++|++++.|+++++..
T Consensus 229 ~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 229 ADGAIVAHGAPADVLT 244 (272)
T ss_pred ECCeEEEecCHHHHcC
Confidence 9999999999988754
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.9e-26 Score=246.90 Aligned_cols=165 Identities=28% Similarity=0.429 Sum_probs=127.1
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE--------------EcCeEE
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV--------------IRGTVA 706 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~--------------~~~~ia 706 (1303)
++++|+++.|++ .++++|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .++.++
T Consensus 1 l~~~~l~~~~~~-~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (213)
T cd03262 1 IEIKNLHKSFGD-FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVG 79 (213)
T ss_pred CEEEEEEEEECC-eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcce
Confidence 468999999975 46999999999999999999999999999999999999998874321 124599
Q ss_pred EEccCccccc-ccHHHHHccCC----CCChh----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHH
Q 000746 707 YVPQISWIFN-ATLRKNILFGS----EFDPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMAR 777 (1303)
Q Consensus 707 yv~Q~p~l~~-~TireNI~~g~----~~~~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLAR 777 (1303)
|++|+|.++. .|++||+.++. ..+.+ +..+.++..++. ........+||||||||++|||
T Consensus 80 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv~la~ 148 (213)
T cd03262 80 MVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLA-----------DKADAYPAQLSGGQQQRVAIAR 148 (213)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCH-----------hHhhhCccccCHHHHHHHHHHH
Confidence 9999999885 69999998753 22222 222333333332 2233445789999999999999
Q ss_pred HHHH-----------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEE
Q 000746 778 AVFN-----------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMI 817 (1303)
Q Consensus 778 Al~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i 817 (1303)
|+.. +.+.+.. .++|+|++||+++.+. .||+|++|++|++
T Consensus 149 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 149 ALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9542 2344332 4789999999999985 5999999999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.3e-25 Score=250.63 Aligned_cols=188 Identities=21% Similarity=0.346 Sum_probs=140.2
Q ss_pred cEEEEeeEEEeCC--------CCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-----------
Q 000746 640 AVSIKNGNFSWDS--------KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----------- 700 (1303)
Q Consensus 640 ~i~~~~~~f~~~~--------~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----------- 700 (1303)
.++++|++++|+. ..++|+|+||++++||+++|+||||||||||+++|+|+++|.+|.+..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 5899999999952 236999999999999999999999999999999999999999875321
Q ss_pred -EcCeEEEEccCcc--cc-cccHHHHHccCC----CCCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchH
Q 000746 701 -IRGTVAYVPQISW--IF-NATLRKNILFGS----EFDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGG 768 (1303)
Q Consensus 701 -~~~~iayv~Q~p~--l~-~~TireNI~~g~----~~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGG 768 (1303)
.+..++|++|+|. ++ +.|+.+|+.++. ..+. ++..++++.+++.++. ......+||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LS~G 153 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDH----------ASYYPHMLAPG 153 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHH----------HhcCchhcCHH
Confidence 1236999999985 34 348999987532 1221 2334445555542211 11234679999
Q ss_pred HHHHHHHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCcccc-cCEEEEEeCCEEEEecC
Q 000746 769 QKQRVSMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLPH-VDRIILVSEGMIKEEGS 822 (1303)
Q Consensus 769 QkQRiaLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~~-aD~ii~l~~G~i~~~g~ 822 (1303)
||||++||||+.. +.+.+.. .++|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 154 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~ 233 (267)
T PRK15112 154 QKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGS 233 (267)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCC
Confidence 9999999999642 2344432 37899999999999875 99999999999999999
Q ss_pred HHHHHhcc--hHHHHHH
Q 000746 823 FEELSKHG--RLFQKLM 837 (1303)
Q Consensus 823 ~~~l~~~~--~~~~~l~ 837 (1303)
++++.... ..+.+++
T Consensus 234 ~~~~~~~~~~~~~~~~~ 250 (267)
T PRK15112 234 TADVLASPLHELTKRLI 250 (267)
T ss_pred HHHHhcCCCCHHHHHHH
Confidence 99987643 3344443
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-25 Score=253.06 Aligned_cols=183 Identities=22% Similarity=0.345 Sum_probs=140.7
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCC-----CCceE--------------
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPL-----KDASV-------------- 699 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~-----~g~~~-------------- 699 (1303)
+.++++|++++|++ .++|+|+||++++|++++|+|+||||||||+++|.|+++|. +|...
T Consensus 6 ~~l~~~nl~~~~~~-~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~ 84 (261)
T PRK14258 6 PAIKVNNLSFYYDT-QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLN 84 (261)
T ss_pred ceEEEeeEEEEeCC-eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchH
Confidence 36899999999964 36999999999999999999999999999999999999984 44211
Q ss_pred EEcCeEEEEccCcccccccHHHHHccCCC---C-Ch----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHH
Q 000746 700 VIRGTVAYVPQISWIFNATLRKNILFGSE---F-DP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQ 771 (1303)
Q Consensus 700 ~~~~~iayv~Q~p~l~~~TireNI~~g~~---~-~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQ 771 (1303)
..++.++|++|++.+|..|++||+.++.. . ++ ++..++++..++.+.+. ...+....+|||||||
T Consensus 85 ~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq~q 157 (261)
T PRK14258 85 RLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIK-------HKIHKSALDLSGGQQQ 157 (261)
T ss_pred HhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhh-------hHhcCCcccCCHHHHH
Confidence 01346999999999999999999986521 1 11 22333444444432222 2345567889999999
Q ss_pred HHHHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeC-----CEEEEe
Q 000746 772 RVSMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSE-----GMIKEE 820 (1303)
Q Consensus 772 RiaLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~-----G~i~~~ 820 (1303)
|++||||+.. +.+.+.. .++|+|++||+++.+. .||+|++|++ |++++.
T Consensus 158 rv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 237 (261)
T PRK14258 158 RLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEF 237 (261)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEe
Confidence 9999999542 2344322 4899999999999875 5999999999 999999
Q ss_pred cCHHHHHhc
Q 000746 821 GSFEELSKH 829 (1303)
Q Consensus 821 g~~~~l~~~ 829 (1303)
|+++++.+.
T Consensus 238 ~~~~~~~~~ 246 (261)
T PRK14258 238 GLTKKIFNS 246 (261)
T ss_pred CCHHHHHhC
Confidence 999998653
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-25 Score=251.18 Aligned_cols=183 Identities=20% Similarity=0.288 Sum_probs=138.1
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE---------E---------
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV---------I--------- 701 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~---------~--------- 701 (1303)
.++++|+++.|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|.+.. +
T Consensus 6 ~l~~~~l~~~~~~-~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~ 84 (258)
T PRK11701 6 LLSVRGLTKLYGP-RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERR 84 (258)
T ss_pred eEEEeeeEEEcCC-ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHH
Confidence 5899999999975 47999999999999999999999999999999999999999874321 1
Q ss_pred ---cCeEEEEccCcc--cc-cccHHHHHccCC----CCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHH
Q 000746 702 ---RGTVAYVPQISW--IF-NATLRKNILFGS----EFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQ 771 (1303)
Q Consensus 702 ---~~~iayv~Q~p~--l~-~~TireNI~~g~----~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQ 771 (1303)
++.++|++|++. ++ +.|+.|||.+.. ..+..+..+ ...+.++.++-+ .+.....+.+|||||||
T Consensus 85 ~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~-~~~~~~~~~~LS~Gq~q 158 (258)
T PRK11701 85 RLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRA-----TAGDWLERVEID-AARIDDLPTTFSGGMQQ 158 (258)
T ss_pred HHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHH-----HHHHHHHHcCCC-hhHHhCCCccCCHHHHH
Confidence 225999999984 33 458899986421 111111111 112334444322 13456778899999999
Q ss_pred HHHHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHH
Q 000746 772 RVSMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEE 825 (1303)
Q Consensus 772 RiaLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~ 825 (1303)
|++||||+.. +.+.+.. .+.|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 159 rl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 238 (258)
T PRK11701 159 RLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQ 238 (258)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 9999999542 3344433 2789999999999986 699999999999999999998
Q ss_pred HHhc
Q 000746 826 LSKH 829 (1303)
Q Consensus 826 l~~~ 829 (1303)
+..+
T Consensus 239 ~~~~ 242 (258)
T PRK11701 239 VLDD 242 (258)
T ss_pred HhcC
Confidence 8643
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-25 Score=249.63 Aligned_cols=175 Identities=18% Similarity=0.235 Sum_probs=129.9
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCC--CCCCCceEEE--------------cCe
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGEL--PPLKDASVVI--------------RGT 704 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~--~~~~g~~~~~--------------~~~ 704 (1303)
++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+. +|++|.+ .+ +..
T Consensus 1 l~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i-~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR01978 1 LKIKDLHVSVED-KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTI-LFKGQDLLELEPDERARAG 78 (243)
T ss_pred CeEeeEEEEECC-EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceE-EECCEecCCCCHHHhhccc
Confidence 468999999974 46999999999999999999999999999999999995 6888743 22 123
Q ss_pred EEEEccCcccccc-cHHHHHccCCC----------CCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCC-CCchH
Q 000746 705 VAYVPQISWIFNA-TLRKNILFGSE----------FDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGV-NISGG 768 (1303)
Q Consensus 705 iayv~Q~p~l~~~-TireNI~~g~~----------~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~-~LSGG 768 (1303)
++|++|+|.++.+ |++||+.+... .+. ++..++++..++.++ . ...... +||||
T Consensus 79 i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~---~~~~~~~~LS~G 148 (243)
T TIGR01978 79 LFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEE-------F---LNRSVNEGFSGG 148 (243)
T ss_pred eEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchh-------h---cccccccCcCHH
Confidence 8999999998865 89999976421 111 112222222222211 1 112222 49999
Q ss_pred HHHHHHHHHHHHH-----------------------HHHhHhc-CCCEEEEEecCCCcccc--cCEEEEEeCCEEEEecC
Q 000746 769 QKQRVSMARAVFN-----------------------SCIKEEL-RGKTRILVTNQLHFLPH--VDRIILVSEGMIKEEGS 822 (1303)
Q Consensus 769 QkQRiaLARAl~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~~--aD~ii~l~~G~i~~~g~ 822 (1303)
||||++||||++. +.+.+.. +++|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 149 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~ 228 (243)
T TIGR01978 149 EKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGD 228 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecC
Confidence 9999999999542 2333332 47899999999999875 79999999999999998
Q ss_pred HHHHH
Q 000746 823 FEELS 827 (1303)
Q Consensus 823 ~~~l~ 827 (1303)
++++.
T Consensus 229 ~~~~~ 233 (243)
T TIGR01978 229 VELAK 233 (243)
T ss_pred HHHhc
Confidence 87543
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-25 Score=258.03 Aligned_cols=181 Identities=18% Similarity=0.278 Sum_probs=134.3
Q ss_pred cEEEEeeEEEeCCC---CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCC----CCCceEEEc----------
Q 000746 640 AVSIKNGNFSWDSK---SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP----LKDASVVIR---------- 702 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~---~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~----~~g~~~~~~---------- 702 (1303)
.++++|+++.|+.+ ..+|+||||+|++||+++|+|+||||||||+++|+|++++ ++|. +.++
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~-i~~~G~~i~~~~~~ 81 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEK-LEFNGQDLQRISEK 81 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceE-EEECCEECCcCCHH
Confidence 47899999999753 2589999999999999999999999999999999999974 5553 3222
Q ss_pred -------CeEEEEccCcc--cc-cccHHHHHc----cCCCCC----hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCC
Q 000746 703 -------GTVAYVPQISW--IF-NATLRKNIL----FGSEFD----PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVN 764 (1303)
Q Consensus 703 -------~~iayv~Q~p~--l~-~~TireNI~----~g~~~~----~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~ 764 (1303)
+.|+|++|+|. +. .-|+.+|+. .....+ +++..+.++..+|.+. .........+
T Consensus 82 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~--------~~~l~~~p~~ 153 (326)
T PRK11022 82 ERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDP--------ASRLDVYPHQ 153 (326)
T ss_pred HHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------HHHHhCCchh
Confidence 25999999995 33 346666553 221122 2233344444444221 1223456778
Q ss_pred CchHHHHHHHHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCcc-cccCEEEEEeCCEEE
Q 000746 765 ISGGQKQRVSMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFL-PHVDRIILVSEGMIK 818 (1303)
Q Consensus 765 LSGGQkQRiaLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~ 818 (1303)
||||||||++||||+.. +.+.+.. .+.|+|+|||+++.+ ..||+|++|.+|+|+
T Consensus 154 LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~iv 233 (326)
T PRK11022 154 LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVV 233 (326)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999642 2233332 378999999999987 469999999999999
Q ss_pred EecCHHHHHhc
Q 000746 819 EEGSFEELSKH 829 (1303)
Q Consensus 819 ~~g~~~~l~~~ 829 (1303)
+.|+.+++.++
T Consensus 234 e~g~~~~~~~~ 244 (326)
T PRK11022 234 ETGKAHDIFRA 244 (326)
T ss_pred EECCHHHHhhC
Confidence 99999999865
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.2e-25 Score=249.93 Aligned_cols=181 Identities=23% Similarity=0.332 Sum_probs=138.0
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CCCceEE--------------
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP-----LKDASVV-------------- 700 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~-----~~g~~~~-------------- 700 (1303)
.++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++| ++|.+..
T Consensus 4 ~l~i~~v~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~ 82 (258)
T PRK14241 4 RIDVKDLNIYYGS-FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA 82 (258)
T ss_pred cEEEeeEEEEECC-EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHH
Confidence 5899999999975 3699999999999999999999999999999999999974 5663321
Q ss_pred EcCeEEEEccCccccc-ccHHHHHccCCC----CCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHH
Q 000746 701 IRGTVAYVPQISWIFN-ATLRKNILFGSE----FDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQ 771 (1303)
Q Consensus 701 ~~~~iayv~Q~p~l~~-~TireNI~~g~~----~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQ 771 (1303)
.++.++|++|++.++. .|++||+.++.. .+. ++..++++..++.+.+ .........+|||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~q 155 (258)
T PRK14241 83 VRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEV-------KDRLDKPGGGLSGGQQQ 155 (258)
T ss_pred HhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------hhHhhCCcccCCHHHHH
Confidence 1245999999999886 699999986531 111 1223333333332211 12334566789999999
Q ss_pred HHHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCcc-cccCEEEEEe------CCEEEEec
Q 000746 772 RVSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFL-PHVDRIILVS------EGMIKEEG 821 (1303)
Q Consensus 772 RiaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l-~~aD~ii~l~------~G~i~~~g 821 (1303)
|++||||++. +.+.+..+++|+|++||+++.+ +.||+|++|+ +|++++.|
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~~ 235 (258)
T PRK14241 156 RLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEID 235 (258)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEecC
Confidence 9999999542 3344444578999999999986 4699999996 89999999
Q ss_pred CHHHHHh
Q 000746 822 SFEELSK 828 (1303)
Q Consensus 822 ~~~~l~~ 828 (1303)
+++++..
T Consensus 236 ~~~~~~~ 242 (258)
T PRK14241 236 DTEKIFS 242 (258)
T ss_pred CHHHHHh
Confidence 9998864
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-25 Score=247.09 Aligned_cols=179 Identities=28% Similarity=0.428 Sum_probs=129.9
Q ss_pred EEEEeeEEEeCCC---CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCC---CCCCceEE---------EcCeE
Q 000746 641 VSIKNGNFSWDSK---SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELP---PLKDASVV---------IRGTV 705 (1303)
Q Consensus 641 i~~~~~~f~~~~~---~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~---~~~g~~~~---------~~~~i 705 (1303)
+.++|+++.|++. .++++|+||+|++||+++|+||||||||||+++|.|+++ |++|.+.. .+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i 83 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCV 83 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccE
Confidence 5789999999765 579999999999999999999999999999999999998 88874321 24569
Q ss_pred EEEccCcccccc-cHHHHHccCCCCC-hhhHHHHHHHHhhHHHhhcCCCCCCccc-cCCCCCCchHHHHHHHHHHHHHH-
Q 000746 706 AYVPQISWIFNA-TLRKNILFGSEFD-PAKYWKTVDVSALQHDLDLLPDRDLTEI-GERGVNISGGQKQRVSMARAVFN- 781 (1303)
Q Consensus 706 ayv~Q~p~l~~~-TireNI~~g~~~~-~~~~~~vl~~~~l~~~i~~lp~g~~T~i-ge~G~~LSGGQkQRiaLARAl~~- 781 (1303)
+|++|++.++++ |++||+.++.... .....+.......++ ..++....+.+ .....+||||||||++||||+..
T Consensus 84 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~ 161 (226)
T cd03234 84 AYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVED--VLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWD 161 (226)
T ss_pred EEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHH--HHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhC
Confidence 999999999976 9999998753210 000000000000011 01222222333 33457899999999999999642
Q ss_pred ----------------------HHHhHhc-CCCEEEEEecCCC--cccccCEEEEEeCCEEEEec
Q 000746 782 ----------------------SCIKEEL-RGKTRILVTNQLH--FLPHVDRIILVSEGMIKEEG 821 (1303)
Q Consensus 782 ----------------------~~i~~~~-~~~TvilvtH~~~--~l~~aD~ii~l~~G~i~~~g 821 (1303)
+.+.+.. +++|+|++||++. ....||++++|++|+++++|
T Consensus 162 p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 162 PKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 2333332 4789999999983 45779999999999999865
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.5e-25 Score=251.13 Aligned_cols=176 Identities=26% Similarity=0.393 Sum_probs=135.0
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc----------CeEEEEc
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR----------GTVAYVP 709 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~----------~~iayv~ 709 (1303)
.++++|++++|+++.++++|+||+|++|++++|+||||||||||+++|+|+++|++|.+ .+. ..++|++
T Consensus 6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~i~~~~~~~~i~~v~ 84 (272)
T PRK15056 6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKI-SILGQPTRQALQKNLVAYVP 84 (272)
T ss_pred eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEEhHHhhccceEEEec
Confidence 58999999999754579999999999999999999999999999999999999998743 332 3599999
Q ss_pred cCccc---ccccHHHHHccCCC--------C---ChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHH
Q 000746 710 QISWI---FNATLRKNILFGSE--------F---DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSM 775 (1303)
Q Consensus 710 Q~p~l---~~~TireNI~~g~~--------~---~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaL 775 (1303)
|+|.+ +..++++|+.++.. . ++++..++++..++.+.. + ....+||||||||++|
T Consensus 85 q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-------~----~~~~~LSgG~~qrv~l 153 (272)
T PRK15056 85 QSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFR-------H----RQIGELSGGQKKRVFL 153 (272)
T ss_pred cccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHh-------c----CCcccCCHHHHHHHHH
Confidence 99865 45689999976421 0 122334444444443322 2 2345799999999999
Q ss_pred HHHHHH-----------------------HHHhHhc-CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHHh
Q 000746 776 ARAVFN-----------------------SCIKEEL-RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 776 ARAl~~-----------------------~~i~~~~-~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
|||++. +.+.+.. +++|+|++||+++.+ ..||+++++ +|++++.|+++++..
T Consensus 154 araL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~~ 230 (272)
T PRK15056 154 ARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTFT 230 (272)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhccC
Confidence 999642 2343332 478999999999876 569999777 899999999988753
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.3e-25 Score=256.44 Aligned_cols=194 Identities=18% Similarity=0.292 Sum_probs=141.4
Q ss_pred CcEEEEeeEEEeCCC---CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCC---CCceEEE-----------
Q 000746 639 PAVSIKNGNFSWDSK---SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPL---KDASVVI----------- 701 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~---~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~---~g~~~~~----------- 701 (1303)
+.++++|+++.|+.. .++++|+||+|++||+++|+|+||||||||+++|+|+++|. +|. +.+
T Consensus 11 ~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~-I~~~G~~i~~~~~~ 89 (330)
T PRK09473 11 ALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGS-ATFNGREILNLPEK 89 (330)
T ss_pred ceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeE-EEECCEECCcCCHH
Confidence 468999999999632 36899999999999999999999999999999999999985 663 322
Q ss_pred -----c-CeEEEEccCcc--cc-cccHHHHHccC----CCCChhhH-HHHHHHHhhHHHhhcCCCCCCccccCCCCCCch
Q 000746 702 -----R-GTVAYVPQISW--IF-NATLRKNILFG----SEFDPAKY-WKTVDVSALQHDLDLLPDRDLTEIGERGVNISG 767 (1303)
Q Consensus 702 -----~-~~iayv~Q~p~--l~-~~TireNI~~g----~~~~~~~~-~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSG 767 (1303)
+ +.|+||+|+|. +. ..|+.+|+... ...+.++. .++.+. .+.+ .++++. ..++....+|||
T Consensus 90 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~---L~~v-gL~~~~-~~~~~~p~~LSg 164 (330)
T PRK09473 90 ELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRM---LDAV-KMPEAR-KRMKMYPHEFSG 164 (330)
T ss_pred HHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHH---HHHc-CCCChH-HHhcCCcccCCH
Confidence 1 36999999983 43 35888877532 12232222 222221 1222 234332 235677889999
Q ss_pred HHHHHHHHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEec
Q 000746 768 GQKQRVSMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEG 821 (1303)
Q Consensus 768 GQkQRiaLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g 821 (1303)
|||||++||||+.. +.+.+.. .+.|+|+|||+++.+. .||+|++|++|+|++.|
T Consensus 165 G~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g 244 (330)
T PRK09473 165 GMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYG 244 (330)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999542 2333332 3789999999999976 69999999999999999
Q ss_pred CHHHHHhcc--hHHHHHHH
Q 000746 822 SFEELSKHG--RLFQKLME 838 (1303)
Q Consensus 822 ~~~~l~~~~--~~~~~l~~ 838 (1303)
+.+++.++. .+.+.++.
T Consensus 245 ~~~~i~~~p~~pyt~~l~~ 263 (330)
T PRK09473 245 NARDVFYQPSHPYSIGLLN 263 (330)
T ss_pred CHHHHHhCCCCHHHHHHHH
Confidence 999998643 33344443
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-25 Score=244.87 Aligned_cols=166 Identities=30% Similarity=0.443 Sum_probs=129.9
Q ss_pred EEEEeeEEEeCCC---CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE---------------Ec
Q 000746 641 VSIKNGNFSWDSK---SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV---------------IR 702 (1303)
Q Consensus 641 i~~~~~~f~~~~~---~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~---------------~~ 702 (1303)
++++|+++.|+++ .++|+|+||++++|++++|+|+||||||||+++|.|+++|++|.+.. .+
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 6899999999642 46999999999999999999999999999999999999999874321 12
Q ss_pred CeEEEEccCccccc-ccHHHHHccCCC----CChh----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHH
Q 000746 703 GTVAYVPQISWIFN-ATLRKNILFGSE----FDPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRV 773 (1303)
Q Consensus 703 ~~iayv~Q~p~l~~-~TireNI~~g~~----~~~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRi 773 (1303)
..++|++|+|.++. .|+.||+.++.. .+.+ ++.++++.+++.+.. .....+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~lS~G~~qrv 150 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHL-----------DYYPHNLSGGQKQRV 150 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhh-----------hcChhhCCHHHHHHH
Confidence 46999999999886 799999987542 2222 233444444443333 334468999999999
Q ss_pred HHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCcccccCEEEEEeCCEE
Q 000746 774 SMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLPHVDRIILVSEGMI 817 (1303)
Q Consensus 774 aLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~~aD~ii~l~~G~i 817 (1303)
+||||+.. +.+++.. +++|+|++||+++....||+|++|++|++
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 99999642 2344433 37999999999998888999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-25 Score=239.15 Aligned_cols=149 Identities=28% Similarity=0.467 Sum_probs=122.8
Q ss_pred cEEEEeeEEEeCC-----CCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCC--CCCCCceEE---------EcC
Q 000746 640 AVSIKNGNFSWDS-----KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGEL--PPLKDASVV---------IRG 703 (1303)
Q Consensus 640 ~i~~~~~~f~~~~-----~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~--~~~~g~~~~---------~~~ 703 (1303)
.++++|+++.|+. +.++++|+||++++||+++|+||||||||||+++|+|++ +|.+|.+.. .++
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~ 82 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRK 82 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhh
Confidence 5899999999975 257999999999999999999999999999999999999 998874321 245
Q ss_pred eEEEEccCccccc-ccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-
Q 000746 704 TVAYVPQISWIFN-ATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN- 781 (1303)
Q Consensus 704 ~iayv~Q~p~l~~-~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~- 781 (1303)
.++|++|++.++. .|++||+.++... . .||||||||++||||+..
T Consensus 83 ~i~~~~q~~~~~~~~t~~~~i~~~~~~--------------~-------------------~LS~G~~qrv~laral~~~ 129 (194)
T cd03213 83 IIGYVPQDDILHPTLTVRETLMFAAKL--------------R-------------------GLSGGERKRVSIALELVSN 129 (194)
T ss_pred eEEEccCcccCCCCCcHHHHHHHHHHh--------------c-------------------cCCHHHHHHHHHHHHHHcC
Confidence 7999999999886 5999999653210 0 799999999999999542
Q ss_pred ----------------------HHHhHhc-CCCEEEEEecCCC-cc-cccCEEEEEeCCEEEEec
Q 000746 782 ----------------------SCIKEEL-RGKTRILVTNQLH-FL-PHVDRIILVSEGMIKEEG 821 (1303)
Q Consensus 782 ----------------------~~i~~~~-~~~TvilvtH~~~-~l-~~aD~ii~l~~G~i~~~g 821 (1303)
+.+++.. +++|+|++||+++ .+ ..+|++++|++|++++.|
T Consensus 130 p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 130 PSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 2344433 4899999999997 44 569999999999998754
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-25 Score=260.60 Aligned_cols=172 Identities=23% Similarity=0.409 Sum_probs=133.0
Q ss_pred eeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----------------EcCeEEEE
Q 000746 645 NGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----------------IRGTVAYV 708 (1303)
Q Consensus 645 ~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----------------~~~~iayv 708 (1303)
|++++|++. .+ |+||++++||+++|+||||||||||+++|+|+++|++|.+.. .+..++|+
T Consensus 4 ~l~~~~~~~--~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v 80 (354)
T TIGR02142 4 RFSKRLGDF--SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV 80 (354)
T ss_pred EEEEEECCE--EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEE
Confidence 788899643 35 999999999999999999999999999999999998874321 13469999
Q ss_pred ccCccccc-ccHHHHHccCCCC-Ch----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-
Q 000746 709 PQISWIFN-ATLRKNILFGSEF-DP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN- 781 (1303)
Q Consensus 709 ~Q~p~l~~-~TireNI~~g~~~-~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~- 781 (1303)
+|++.+|. .|++||+.++... +. ++..+.++..++. ........+||||||||++||||+..
T Consensus 81 ~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~-----------~~~~~~~~~LSgGqkqRvalAraL~~~ 149 (354)
T TIGR02142 81 FQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIG-----------HLLGRLPGRLSGGEKQRVAIGRALLSS 149 (354)
T ss_pred ecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCCh-----------hHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 99999986 5999999987431 11 1233344433333 23344557899999999999999642
Q ss_pred ----------------------HHHhHhcC--CCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHhcc
Q 000746 782 ----------------------SCIKEELR--GKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSKHG 830 (1303)
Q Consensus 782 ----------------------~~i~~~~~--~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~~~ 830 (1303)
+.+++..+ ++|+|++||+++.+. .||+|++|++|++++.|+++++....
T Consensus 150 p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 223 (354)
T TIGR02142 150 PRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASP 223 (354)
T ss_pred CCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCc
Confidence 23333332 789999999999875 59999999999999999999987643
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-25 Score=219.54 Aligned_cols=169 Identities=26% Similarity=0.352 Sum_probs=131.4
Q ss_pred cEEEEeeEEEeCCCC---CccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----------------
Q 000746 640 AVSIKNGNFSWDSKS---PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV---------------- 700 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~---~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~---------------- 700 (1303)
.|++++++..-+... ++|++|+|.|++||.++||||||||||||+..+.|+-.|++|.+..
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 467777777665433 6999999999999999999999999999999999999999986543
Q ss_pred EcCeEEEEccCcccc-cccHHHHHccCCCCC-----h--hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHH
Q 000746 701 IRGTVAYVPQISWIF-NATLRKNILFGSEFD-----P--AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQR 772 (1303)
Q Consensus 701 ~~~~iayv~Q~p~l~-~~TireNI~~g~~~~-----~--~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQR 772 (1303)
..+++++|+|.-.|. |.|-.||+....+.. + +.-.+-+++.+|.+-+.. -..+||||++||
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~H-----------yP~qLSGGEQQR 154 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTH-----------YPAQLSGGEQQR 154 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCccccccc-----------CccccCchHHHH
Confidence 135799999998865 889999998654321 1 223445556665554444 346799999999
Q ss_pred HHHHHHHH---------------H----HHHhH------hcCCCEEEEEecCCCcccccCEEEEEeCCEEEE
Q 000746 773 VSMARAVF---------------N----SCIKE------ELRGKTRILVTNQLHFLPHVDRIILVSEGMIKE 819 (1303)
Q Consensus 773 iaLARAl~---------------~----~~i~~------~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~ 819 (1303)
||||||+. + +.+.+ .-.|.|.|+|||++.....|||++.|.+|++++
T Consensus 155 VAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 155 VALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred HHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceecc
Confidence 99999942 1 11111 126899999999999999999999999999975
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-25 Score=255.56 Aligned_cols=167 Identities=22% Similarity=0.355 Sum_probs=129.5
Q ss_pred EeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE------------cCeEEEEccCccccc
Q 000746 649 SWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI------------RGTVAYVPQISWIFN 716 (1303)
Q Consensus 649 ~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~------------~~~iayv~Q~p~l~~ 716 (1303)
+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.+ .+ +..++|+||++.++.
T Consensus 2 ~y~~-~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~~~~i~~~~q~~~~~~ 79 (302)
T TIGR01188 2 VYGD-FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTA-RVAGYDVVREPRKVRRSIGIVPQYASVDE 79 (302)
T ss_pred eeCC-eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEEcccCHHHHHhhcEEecCCCCCCC
Confidence 3543 469999999999999999999999999999999999999998743 33 235999999999886
Q ss_pred c-cHHHHHccCCC---CC----hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-------
Q 000746 717 A-TLRKNILFGSE---FD----PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN------- 781 (1303)
Q Consensus 717 ~-TireNI~~g~~---~~----~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~------- 781 (1303)
. |++||+.+... .+ +++..++++..++.+. ......+||||||||++||||++.
T Consensus 80 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~la~al~~~p~lllL 148 (302)
T TIGR01188 80 DLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEA-----------ADRPVGTYSGGMRRRLDIAASLIHQPDVLFL 148 (302)
T ss_pred CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhH-----------hCCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 4 99999987421 12 1233444444444322 223446799999999999999642
Q ss_pred ----------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHh
Q 000746 782 ----------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 782 ----------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
+.+.+.. +|+|+|++||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 149 DEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 149 DEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 2333332 4799999999999875 599999999999999999998864
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.3e-25 Score=248.30 Aligned_cols=185 Identities=23% Similarity=0.315 Sum_probs=138.7
Q ss_pred cEEEEeeEEEeCC--------CCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-----------
Q 000746 640 AVSIKNGNFSWDS--------KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----------- 700 (1303)
Q Consensus 640 ~i~~~~~~f~~~~--------~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----------- 700 (1303)
.++++|+++.|+. +.++++|+||+|++||+++|+||||||||||+++|.|+++|++|.+..
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 4789999999973 357999999999999999999999999999999999999999874321
Q ss_pred ----EcCeEEEEccCcc--cc-cccHHHHHccCC----CCChhhHHHHHHHHhhHHHhhcCCCCCCc-cccCCCCCCchH
Q 000746 701 ----IRGTVAYVPQISW--IF-NATLRKNILFGS----EFDPAKYWKTVDVSALQHDLDLLPDRDLT-EIGERGVNISGG 768 (1303)
Q Consensus 701 ----~~~~iayv~Q~p~--l~-~~TireNI~~g~----~~~~~~~~~vl~~~~l~~~i~~lp~g~~T-~ige~G~~LSGG 768 (1303)
.++.++|++|++. ++ +.|++||+.+.. ..+.++.. ..+.+.++.+ |.++ ........||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~~LS~G 155 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERL-----ARASEMLRAV--DLDDSVLDKRPPQLSGG 155 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHH-----HHHHHHHHHc--CCChhHhhCCCccCChH
Confidence 1346999999983 33 579999986531 11211111 1112223322 3332 334567789999
Q ss_pred HHHHHHHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecC
Q 000746 769 QKQRVSMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGS 822 (1303)
Q Consensus 769 QkQRiaLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~ 822 (1303)
||||++||||++. +.+.+.. .++|+|++||+++.+. .||++++|++|++++.|+
T Consensus 156 e~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~ 235 (268)
T PRK10419 156 QLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQP 235 (268)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCC
Confidence 9999999999642 3344443 2789999999999986 599999999999999999
Q ss_pred HHHHHhcch
Q 000746 823 FEELSKHGR 831 (1303)
Q Consensus 823 ~~~l~~~~~ 831 (1303)
++++.....
T Consensus 236 ~~~~~~~~~ 244 (268)
T PRK10419 236 VGDKLTFSS 244 (268)
T ss_pred hhhccCCCC
Confidence 999875443
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.1e-25 Score=236.49 Aligned_cols=189 Identities=26% Similarity=0.388 Sum_probs=146.3
Q ss_pred cEEEEeeEEEeCCCC-----------------------CccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCC
Q 000746 640 AVSIKNGNFSWDSKS-----------------------PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKD 696 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~-----------------------~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g 696 (1303)
.|+++|++.-+..+. .-++|+||+|+.||+.+|.|-||||||||++++-|+++|+.|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 577888887775431 137899999999999999999999999999999999999998
Q ss_pred ceEE----------------EcCeEEEEccCcccc-cccHHHHHccCCCC---C-h---hhHHHHHHHHhhHHHhhcCCC
Q 000746 697 ASVV----------------IRGTVAYVPQISWIF-NATLRKNILFGSEF---D-P---AKYWKTVDVSALQHDLDLLPD 752 (1303)
Q Consensus 697 ~~~~----------------~~~~iayv~Q~p~l~-~~TireNI~~g~~~---~-~---~~~~~vl~~~~l~~~i~~lp~ 752 (1303)
.+.. .+.+++.|+|+--|+ +-||.||..||.+. + + ++..++++.++|+..-...
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~y-- 161 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKY-- 161 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcC--
Confidence 5432 245799999998877 77999999999763 2 2 3444566666666554443
Q ss_pred CCCccccCCCCCCchHHHHHHHHHHHHH--------HH-------HHhH-----hc-----CCCEEEEEecCCCc-cccc
Q 000746 753 RDLTEIGERGVNISGGQKQRVSMARAVF--------NS-------CIKE-----EL-----RGKTRILVTNQLHF-LPHV 806 (1303)
Q Consensus 753 g~~T~ige~G~~LSGGQkQRiaLARAl~--------~~-------~i~~-----~~-----~~~TvilvtH~~~~-l~~a 806 (1303)
...||||+|||+.||||+- ++ .|+. .+ -+||+|+|||+++. ++..
T Consensus 162 ---------p~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 162 ---------PNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred ---------cccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 3569999999999999942 11 1211 11 37999999999987 7889
Q ss_pred CEEEEEeCCEEEEecCHHHHHhcc--hHHHHHHHH
Q 000746 807 DRIILVSEGMIKEEGSFEELSKHG--RLFQKLMEN 839 (1303)
Q Consensus 807 D~ii~l~~G~i~~~g~~~~l~~~~--~~~~~l~~~ 839 (1303)
|||..|+||+|++.|+++|+..++ .+.++++++
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~~PAndYV~~Fv~~ 267 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILLNPANDYVRDFVRN 267 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHcCccHHHHHHHHhc
Confidence 999999999999999999998653 444555543
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.7e-26 Score=221.75 Aligned_cols=156 Identities=24% Similarity=0.403 Sum_probs=123.4
Q ss_pred CCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------EcCeEEEEccCcccccccHH
Q 000746 653 KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------IRGTVAYVPQISWIFNATLR 720 (1303)
Q Consensus 653 ~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------~~~~iayv~Q~p~l~~~Tir 720 (1303)
+.++|+|+||++.+||.++|+||||||||||++.+..+.+|++|.... .|.+|+||.|.|.||.+||.
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVe 94 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVE 94 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchh
Confidence 347999999999999999999999999999999999999999974322 34579999999999999999
Q ss_pred HHHccCCC-----CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHH---------------
Q 000746 721 KNILFGSE-----FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF--------------- 780 (1303)
Q Consensus 721 eNI~~g~~-----~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~--------------- 780 (1303)
||+.|.-. .|.+...+.++..++ +++.+..+..+||||+|||+||+|-+.
T Consensus 95 DNlifP~~~r~rr~dr~aa~~llar~~l----------~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsAL 164 (223)
T COG4619 95 DNLIFPWQIRNRRPDRAAALDLLARFAL----------PDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSAL 164 (223)
T ss_pred hccccchHHhccCCChHHHHHHHHHcCC----------chhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhc
Confidence 99999632 344333333332222 345566777899999999999999941
Q ss_pred --------HHHHhHhc--CCCEEEEEecCCCc-ccccCEEEEEeCCEEE
Q 000746 781 --------NSCIKEEL--RGKTRILVTNQLHF-LPHVDRIILVSEGMIK 818 (1303)
Q Consensus 781 --------~~~i~~~~--~~~TvilvtH~~~~-l~~aD~ii~l~~G~i~ 818 (1303)
++.|.... ++..+++|||+.+. ++.||+++-+..|++-
T Consensus 165 D~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~ 213 (223)
T COG4619 165 DESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAG 213 (223)
T ss_pred ChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCccc
Confidence 12232333 57899999999988 8999999999998763
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.8e-25 Score=255.86 Aligned_cols=181 Identities=16% Similarity=0.247 Sum_probs=134.9
Q ss_pred cEEEEeeEEEeCC---CCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCC----CCCCceEEE-----------
Q 000746 640 AVSIKNGNFSWDS---KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELP----PLKDASVVI----------- 701 (1303)
Q Consensus 640 ~i~~~~~~f~~~~---~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~----~~~g~~~~~----------- 701 (1303)
.++++|+++.|+. ...+++|+||+|++||+++|+|+||||||||+++|+|+.+ |++|. +.+
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~-i~~~g~~i~~~~~~ 81 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADR-MRFDDIDLLRLSPR 81 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceE-EEECCEECCcCCHH
Confidence 4789999999953 2368999999999999999999999999999999999986 45653 322
Q ss_pred ------cCeEEEEccCccc--c-cccHHHHHccC---CCC------C----hhhHHHHHHHHhhHHHhhcCCCCCCcccc
Q 000746 702 ------RGTVAYVPQISWI--F-NATLRKNILFG---SEF------D----PAKYWKTVDVSALQHDLDLLPDRDLTEIG 759 (1303)
Q Consensus 702 ------~~~iayv~Q~p~l--~-~~TireNI~~g---~~~------~----~~~~~~vl~~~~l~~~i~~lp~g~~T~ig 759 (1303)
++.|+||+|+|.. . ..||.+|+... ..+ + +++..+.++..+|.+.- ....
T Consensus 82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~--------~~~~ 153 (330)
T PRK15093 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHK--------DAMR 153 (330)
T ss_pred HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChH--------HHHh
Confidence 1369999999973 2 46899999642 100 1 12333444444443210 1123
Q ss_pred CCCCCCchHHHHHHHHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEe
Q 000746 760 ERGVNISGGQKQRVSMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVS 813 (1303)
Q Consensus 760 e~G~~LSGGQkQRiaLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~ 813 (1303)
.....||||||||++||||+.. +.+.+.. .+.|+|+|||+++.+. .||+|++|+
T Consensus 154 ~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~ 233 (330)
T PRK15093 154 SFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLY 233 (330)
T ss_pred CCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEE
Confidence 4457899999999999999642 2333332 3789999999999985 599999999
Q ss_pred CCEEEEecCHHHHHhc
Q 000746 814 EGMIKEEGSFEELSKH 829 (1303)
Q Consensus 814 ~G~i~~~g~~~~l~~~ 829 (1303)
+|+|++.|+.+++.++
T Consensus 234 ~G~ive~g~~~~i~~~ 249 (330)
T PRK15093 234 CGQTVETAPSKELVTT 249 (330)
T ss_pred CCEEEEECCHHHHHhC
Confidence 9999999999998764
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=99.92 E-value=4e-25 Score=237.24 Aligned_cols=148 Identities=24% Similarity=0.362 Sum_probs=121.1
Q ss_pred cEEEEeeEEEeCC---CCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCC--CCCCCceEEE---------cCeE
Q 000746 640 AVSIKNGNFSWDS---KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGEL--PPLKDASVVI---------RGTV 705 (1303)
Q Consensus 640 ~i~~~~~~f~~~~---~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~--~~~~g~~~~~---------~~~i 705 (1303)
.++++|+++.|++ +.++++|+||++++||+++|+||||||||||+++|+|.+ +|++|. +.+ +..+
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~-i~~~g~~~~~~~~~~i 81 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGE-ILINGRPLDKNFQRST 81 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceE-EEECCEehHHHhhhce
Confidence 5889999999975 246999999999999999999999999999999999986 367764 333 3469
Q ss_pred EEEccCccccc-ccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH---
Q 000746 706 AYVPQISWIFN-ATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN--- 781 (1303)
Q Consensus 706 ayv~Q~p~l~~-~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~--- 781 (1303)
+|++|++.++. .|++||+.++.. ++ +||||||||++||||++.
T Consensus 82 ~~~~q~~~~~~~~tv~~~l~~~~~---------~~------------------------~LSgGe~qrv~la~al~~~p~ 128 (192)
T cd03232 82 GYVEQQDVHSPNLTVREALRFSAL---------LR------------------------GLSVEQRKRLTIGVELAAKPS 128 (192)
T ss_pred EEecccCccccCCcHHHHHHHHHH---------Hh------------------------cCCHHHhHHHHHHHHHhcCCc
Confidence 99999998876 599999986310 00 799999999999999542
Q ss_pred --------------------HHHhHhc-CCCEEEEEecCCCc--ccccCEEEEEeC-CEEEEec
Q 000746 782 --------------------SCIKEEL-RGKTRILVTNQLHF--LPHVDRIILVSE-GMIKEEG 821 (1303)
Q Consensus 782 --------------------~~i~~~~-~~~TvilvtH~~~~--l~~aD~ii~l~~-G~i~~~g 821 (1303)
+.+.+.. +++|+|++||+++. ...||+|++|++ |++++.|
T Consensus 129 vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 129 ILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 2333332 47999999999984 567999999998 9998765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.2e-25 Score=221.50 Aligned_cols=180 Identities=28% Similarity=0.448 Sum_probs=140.1
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc-------------CeEEE
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR-------------GTVAY 707 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~-------------~~iay 707 (1303)
|+.+|++++-.++ .+|++++|++++||.++|+||||+||||||++|.||+.|.+|. +.+. ++-|.
T Consensus 2 i~a~nls~~~~Gr-~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~-v~~~g~~l~~~~~~~lA~~raV 79 (259)
T COG4559 2 IRAENLSYSLAGR-RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGE-VTLNGVPLNSWPPEELARHRAV 79 (259)
T ss_pred eeeeeeEEEeecc-eeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCe-EeeCCcChhhCCHHHHHHHhhh
Confidence 6788999888654 6999999999999999999999999999999999999998874 4332 35789
Q ss_pred EccCccc-ccccHHHHHccCC-CC----ChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH
Q 000746 708 VPQISWI-FNATLRKNILFGS-EF----DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN 781 (1303)
Q Consensus 708 v~Q~p~l-~~~TireNI~~g~-~~----~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~ 781 (1303)
.||+..+ |.-|++|-+.+|+ |. +.++-.++.+.|-..-|+..+...+ -..|||||+||+.|||.+-+
T Consensus 80 lpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~-------y~~LSGGEqQRVqlARvLaQ 152 (259)
T COG4559 80 LPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRD-------YRTLSGGEQQRVQLARVLAQ 152 (259)
T ss_pred cccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccc-------hhhcCchHHHHHHHHHHHHH
Confidence 9999876 8999999999986 33 2223334444444444555554333 24699999999999999532
Q ss_pred -------------------------H----HHhHh-cCCCEEEEEecCCCc-ccccCEEEEEeCCEEEEecCHHHHHhc
Q 000746 782 -------------------------S----CIKEE-LRGKTRILVTNQLHF-LPHVDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 782 -------------------------~----~i~~~-~~~~TvilvtH~~~~-l~~aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
. ..++. .+|..|+.|-|+++. ..+||+|++|.+|+++..|++++....
T Consensus 153 l~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vlt~ 231 (259)
T COG4559 153 LWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTD 231 (259)
T ss_pred ccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhcCH
Confidence 0 11111 257899999999998 468999999999999999999998754
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.5e-22 Score=217.94 Aligned_cols=313 Identities=15% Similarity=0.206 Sum_probs=211.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCcchhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 973 TVTLLNSYWLIISSLRAAKRLHDSMLNSILRAPMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVL 1052 (1303)
Q Consensus 973 ~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~~~~~~~~~~i~~~v~ 1052 (1303)
+.+.+.......++.+...++|.++.++++..|+.-+++-.+++++.++++|+..|. .-...+..+....+..+++...
T Consensus 63 ~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~IS-f~~s~lp~~~qa~il~l~s~aY 141 (546)
T COG4615 63 VSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNIS-FAFSRLPELVQAIILTLGSAAY 141 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhccccccee-ehHhhhHHHHHHHHHHHHHHHH
Confidence 344556667788999999999999999999999999999999999999999999987 3334456667777777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHhcChhhHhhcCcHHHHHHHHH------HH
Q 000746 1053 IGIVSTISLWAIMPLLILFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKING------KS 1126 (1303)
Q Consensus 1053 i~~~~~~~~~~~~pl~~~~~~i~~~~~~~~r~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~~~~~~~------~~ 1126 (1303)
+++.+|.+..+.+..+++..+...+..++.-+-.+...++...++++++-.++|-+..+......+...... ..
T Consensus 142 LayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~~ 221 (546)
T COG4615 142 LAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEY 221 (546)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchHHH
Confidence 888888776655555544444443333333333344455667889999999999999988765433322211 11
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000746 1127 MDNNIRFTLANTSSNRWLTIRLETLGGIMIWLIATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAEN 1206 (1303)
Q Consensus 1127 ~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~~~~~~~~e~ 1206 (1303)
-++.............|.++.+-.+.++++++..... ..+.. .+.+ +....+.+-.++.+++.....+-+
T Consensus 222 r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal~~~-----w~st~--~a~t---ivlvlLflr~pL~s~vgilP~l~~ 291 (546)
T COG4615 222 RHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALSLG-----WASTN--VAAT---IVLVLLFLRTPLLSAVGILPTLLT 291 (546)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----cchhh--HHHH---HHHHHHHHhhHHHHHHhhhhHHHH
Confidence 1111111111223345655544333333333222111 11111 1111 222244566788888888888889
Q ss_pred hhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHH
Q 000746 1207 SLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSM 1286 (1303)
Q Consensus 1207 ~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTL 1286 (1303)
+.++.+||.++..-|..+ + -....+.|+| ..||++||.|+|.++. --+.-||++|+.||.|=|+|..||||||+
T Consensus 292 AqvA~~kiakle~~~~~a-~-~~~~q~~p~~---~~lelrnvrfay~~~~-FhvgPiNl~ikrGelvFliG~NGsGKST~ 365 (546)
T COG4615 292 AQVAFNKIAKLELAPYKA-D-FPRPQAFPDW---KTLELRNVRFAYQDNA-FHVGPINLTIKRGELVFLIGGNGSGKSTL 365 (546)
T ss_pred HHHHHHHHHHhhcCCccc-c-CCCCCcCCcc---cceeeeeeeeccCccc-ceecceeeEEecCcEEEEECCCCCcHHHH
Confidence 999999998875422211 1 1112233345 3699999999997653 46888999999999999999999999999
Q ss_pred HHHHhhcccCCCCeee
Q 000746 1287 LNALFRIVELERGENI 1302 (1303)
Q Consensus 1287 i~lL~R~yd~~~G~I~ 1302 (1303)
+++|.|+|.|++|+|+
T Consensus 366 ~~LLtGL~~PqsG~I~ 381 (546)
T COG4615 366 AMLLTGLYQPQSGEIL 381 (546)
T ss_pred HHHHhcccCCCCCcee
Confidence 9999999999999996
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.2e-25 Score=230.83 Aligned_cols=134 Identities=38% Similarity=0.704 Sum_probs=116.4
Q ss_pred EEEEeeEEEeCCC-CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE-------------cCeEE
Q 000746 641 VSIKNGNFSWDSK-SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI-------------RGTVA 706 (1303)
Q Consensus 641 i~~~~~~f~~~~~-~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~-------------~~~ia 706 (1303)
++++|+++.|+++ .++++|+||++++|+.++|+||||||||||+++|.|+++|.+|.. .+ ++.++
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i-~~~g~~~~~~~~~~~~~~i~ 79 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI-LIDGVDLRDLDLESLRKNIA 79 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEE-EECCEEhhhcCHHHHHhhEE
Confidence 4689999999754 269999999999999999999999999999999999999998743 32 23599
Q ss_pred EEccCcccccccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-----
Q 000746 707 YVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN----- 781 (1303)
Q Consensus 707 yv~Q~p~l~~~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~----- 781 (1303)
|++|++.+++.|+.||+ ||||||||++||||+..
T Consensus 80 ~~~~~~~~~~~t~~e~l-----------------------------------------LS~G~~~rl~la~al~~~p~ll 118 (171)
T cd03228 80 YVPQDPFLFSGTIRENI-----------------------------------------LSGGQRQRIAIARALLRDPPIL 118 (171)
T ss_pred EEcCCchhccchHHHHh-----------------------------------------hCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999998 99999999999999642
Q ss_pred ------------------HHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCE
Q 000746 782 ------------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGM 816 (1303)
Q Consensus 782 ------------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~ 816 (1303)
+.+.+..+++|+|++||+++.++.||++++|++|+
T Consensus 119 llDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 119 ILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 33444445799999999999988899999999984
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-24 Score=247.64 Aligned_cols=178 Identities=27% Similarity=0.476 Sum_probs=143.2
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-----------EcCeEEEE
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-----------IRGTVAYV 708 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-----------~~~~iayv 708 (1303)
.++++|++..|+.+..+|+||||+|++|++++++||||||||||+++|+|++.|++|.+.. .+++|||+
T Consensus 4 ~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~ 83 (293)
T COG1131 4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYV 83 (293)
T ss_pred eeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEE
Confidence 4788999999984457999999999999999999999999999999999999998874322 13469999
Q ss_pred ccCcccc-cccHHHHHccCCC-------CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHH
Q 000746 709 PQISWIF-NATLRKNILFGSE-------FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF 780 (1303)
Q Consensus 709 ~Q~p~l~-~~TireNI~~g~~-------~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~ 780 (1303)
||+|.++ +-|++||+.|... .++++..++++..+|.++- ..+...||+|||||++||+|++
T Consensus 84 ~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~lS~G~kqrl~ia~aL~ 152 (293)
T COG1131 84 PQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-----------NKKVRTLSGGMKQRLSIALALL 152 (293)
T ss_pred ccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-----------CcchhhcCHHHHHHHHHHHHHh
Confidence 9999877 5699999987432 2345666777766665411 2345679999999999999964
Q ss_pred H-----------------------HHHhHhc-CC-CEEEEEecCCCcccc-cCEEEEEeCCEEEEecCHHHHHh
Q 000746 781 N-----------------------SCIKEEL-RG-KTRILVTNQLHFLPH-VDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 781 ~-----------------------~~i~~~~-~~-~TvilvtH~~~~l~~-aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
. +.+++.. ++ +||+++||.++.+.. ||+|++|++|+++..|+.+++..
T Consensus 153 ~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~ 226 (293)
T COG1131 153 HDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKE 226 (293)
T ss_pred cCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 2 3344443 34 799999999999766 99999999999999999988754
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-24 Score=243.53 Aligned_cols=185 Identities=21% Similarity=0.342 Sum_probs=136.8
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE---------E---------
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV---------I--------- 701 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~---------~--------- 701 (1303)
.++++|+++.|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|.+|.+.. +
T Consensus 3 ~l~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (253)
T TIGR02323 3 LLQVSGLSKSYGG-GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERR 81 (253)
T ss_pred eEEEeeeEEEeCC-ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHH
Confidence 5899999999975 46899999999999999999999999999999999999999874422 1
Q ss_pred ---cCeEEEEccCcc--c-ccccHHHHHccCC-CCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHH
Q 000746 702 ---RGTVAYVPQISW--I-FNATLRKNILFGS-EFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVS 774 (1303)
Q Consensus 702 ---~~~iayv~Q~p~--l-~~~TireNI~~g~-~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRia 774 (1303)
++.++|++|+|. + +..|+.+|+.+.. .+....+.+ . .....+.++.++-+ .+.......+||||||||++
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~-~~~~~~~l~~l~l~-~~~~~~~~~~LSgG~~qrv~ 158 (253)
T TIGR02323 82 RLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGN-I-RAAAHDWLEEVEID-PTRIDDLPRAFSGGMQQRLQ 158 (253)
T ss_pred HhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHH-H-HHHHHHHHHHcCCC-hhhhhcCchhcCHHHHHHHH
Confidence 134899999984 2 3458899985321 000000000 0 01223344444321 23456677899999999999
Q ss_pred HHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHh
Q 000746 775 MARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 775 LARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
||||++. +.+.+.. .+.|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus 159 laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~~~~~~ 238 (253)
T TIGR02323 159 IARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLD 238 (253)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCHHHHhc
Confidence 9999542 3344433 3799999999999987 599999999999999999988864
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-25 Score=224.95 Aligned_cols=185 Identities=25% Similarity=0.421 Sum_probs=141.6
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-------------EcCeEE
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-------------IRGTVA 706 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-------------~~~~ia 706 (1303)
.+..+|+..+|..+ ++++++||++++||+|++.||||+||||....+.|+.+|++|.+.. -|-.|+
T Consensus 4 ~L~a~~l~K~y~kr-~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGig 82 (243)
T COG1137 4 TLVAENLAKSYKKR-KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIG 82 (243)
T ss_pred EEEehhhhHhhCCe-eeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcc
Confidence 47788999999754 7999999999999999999999999999999999999999975432 123599
Q ss_pred EEccCccccc-ccHHHHHccCCCCCh---hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHH--
Q 000746 707 YVPQISWIFN-ATLRKNILFGSEFDP---AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF-- 780 (1303)
Q Consensus 707 yv~Q~p~l~~-~TireNI~~g~~~~~---~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~-- 780 (1303)
|.||+|-+|. -||+|||..--++.+ +.-.+-.+..+|.+++.. ...-...|.+||||||.|+-||||+.
T Consensus 83 YLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i-----~hlr~~~a~sLSGGERRR~EIARaLa~~ 157 (243)
T COG1137 83 YLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHI-----THLRDSKAYSLSGGERRRVEIARALAAN 157 (243)
T ss_pred cccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhch-----HHHhcCcccccccchHHHHHHHHHHhcC
Confidence 9999999995 499999986554322 211222222234444322 22234678999999999999999952
Q ss_pred ---------------------HHHHhHhc-CCCEEEEEecCCC-cccccCEEEEEeCCEEEEecCHHHHHhcc
Q 000746 781 ---------------------NSCIKEEL-RGKTRILVTNQLH-FLPHVDRIILVSEGMIKEEGSFEELSKHG 830 (1303)
Q Consensus 781 ---------------------~~~i~~~~-~~~TvilvtH~~~-~l~~aD~ii~l~~G~i~~~g~~~~l~~~~ 830 (1303)
++.+.... +|--|++.-|++. ++.-|||.+++.+|+|..+|+++|+.++.
T Consensus 158 P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~ 230 (243)
T COG1137 158 PKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNE 230 (243)
T ss_pred CCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcCh
Confidence 22333322 5777888889985 58999999999999999999999998653
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-24 Score=229.80 Aligned_cols=136 Identities=29% Similarity=0.557 Sum_probs=115.3
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-----------EcCeEEEEc
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-----------IRGTVAYVP 709 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-----------~~~~iayv~ 709 (1303)
++++|+++.|++. ++|+|+||++++||+++|+||||||||||+++|.|+++|.+|.... .++.++|++
T Consensus 1 l~~~~l~~~~~~~-~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (173)
T cd03230 1 IEVRNLSKRYGKK-TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLP 79 (173)
T ss_pred CEEEEEEEEECCe-eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEe
Confidence 4689999999753 6999999999999999999999999999999999999998874321 134699999
Q ss_pred cCcccccc-cHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-------
Q 000746 710 QISWIFNA-TLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN------- 781 (1303)
Q Consensus 710 Q~p~l~~~-TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~------- 781 (1303)
|++.++.+ |++||+. ||||||||++||||+..
T Consensus 80 q~~~~~~~~tv~~~~~----------------------------------------LS~G~~qrv~laral~~~p~illl 119 (173)
T cd03230 80 EEPSLYENLTVRENLK----------------------------------------LSGGMKQRLALAQALLHDPELLIL 119 (173)
T ss_pred cCCccccCCcHHHHhh----------------------------------------cCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99998875 9999984 99999999999999642
Q ss_pred ----------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEE
Q 000746 782 ----------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMI 817 (1303)
Q Consensus 782 ----------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i 817 (1303)
+.+.+.. ++.|+|++||+.+.+. .||++++|++|++
T Consensus 120 DEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 120 DEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 2343332 4689999999999877 6999999999974
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-24 Score=233.53 Aligned_cols=155 Identities=25% Similarity=0.357 Sum_probs=121.0
Q ss_pred cEEEEeeEEEeCC---CCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCC---CCCCceEE-----------Ec
Q 000746 640 AVSIKNGNFSWDS---KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELP---PLKDASVV-----------IR 702 (1303)
Q Consensus 640 ~i~~~~~~f~~~~---~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~---~~~g~~~~-----------~~ 702 (1303)
.+.++|++|.|+. +.++|+|+||++++||+++|+||||||||||+++|.|+++ |++|.+.. .+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~ 82 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP 82 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence 4789999999974 3479999999999999999999999999999999999998 77874321 23
Q ss_pred CeEEEEccCccccc-ccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH
Q 000746 703 GTVAYVPQISWIFN-ATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN 781 (1303)
Q Consensus 703 ~~iayv~Q~p~l~~-~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~ 781 (1303)
+.++|++|++.++. .|++||+.++.... ..+....||||||||++||||++.
T Consensus 83 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---------------------------~~~~~~~LS~Ge~qrl~laral~~ 135 (202)
T cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFALRCK---------------------------GNEFVRGISGGERKRVSIAEALVS 135 (202)
T ss_pred ceEEEEecccccCCCCcHHHHHhhhhhhc---------------------------cccchhhCCHHHHHHHHHHHHHhh
Confidence 46999999998886 59999998653110 123446799999999999999642
Q ss_pred -----------------------HHHhHhcC--CCEEEEEecC-CCc-ccccCEEEEEeCCEEEEec
Q 000746 782 -----------------------SCIKEELR--GKTRILVTNQ-LHF-LPHVDRIILVSEGMIKEEG 821 (1303)
Q Consensus 782 -----------------------~~i~~~~~--~~TvilvtH~-~~~-l~~aD~ii~l~~G~i~~~g 821 (1303)
+.+++..+ +.|+|+++|+ .+. ...||++++|++|++++.|
T Consensus 136 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 136 RASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 23444332 5677776665 455 4679999999999998764
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.9e-24 Score=237.59 Aligned_cols=185 Identities=22% Similarity=0.264 Sum_probs=140.6
Q ss_pred cEEEEeeEEEeCCC-------------------CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE
Q 000746 640 AVSIKNGNFSWDSK-------------------SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV 700 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~-------------------~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~ 700 (1303)
.|+++|++..|... .++|+|+||+|++|++++|+||||||||||+++|+|+++|.+| .+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G-~I~ 82 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVG-KVD 82 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCce-EEE
Confidence 46777777776431 2589999999999999999999999999999999999999987 567
Q ss_pred EcCeEEEEccCcccc-cccHHHHHccCC---CCChhhHHH----HHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHH
Q 000746 701 IRGTVAYVPQISWIF-NATLRKNILFGS---EFDPAKYWK----TVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQR 772 (1303)
Q Consensus 701 ~~~~iayv~Q~p~l~-~~TireNI~~g~---~~~~~~~~~----vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQR 772 (1303)
+.+.+++++|++.+. ..|++||+.++. .++.++..+ +++..++. ..+.....+||||||||
T Consensus 83 ~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~Gq~qr 151 (264)
T PRK13546 83 RNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELG-----------EFIYQPVKKYSSGMRAK 151 (264)
T ss_pred ECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-----------hhhcCCcccCCHHHHHH
Confidence 888899999999877 469999997642 233333322 22222222 22344567899999999
Q ss_pred HHHHHHHHH-----------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHH
Q 000746 773 VSMARAVFN-----------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELS 827 (1303)
Q Consensus 773 iaLARAl~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~ 827 (1303)
++||||++. +.+.+.. .++|+|++||+++.+. .||+|++|++|++++.|+++++.
T Consensus 152 v~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (264)
T PRK13546 152 LGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVL 231 (264)
T ss_pred HHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHHHH
Confidence 999999642 1233322 4899999999999876 59999999999999999999988
Q ss_pred hcchHHHHH
Q 000746 828 KHGRLFQKL 836 (1303)
Q Consensus 828 ~~~~~~~~l 836 (1303)
+....|.+.
T Consensus 232 ~~~~~~~~~ 240 (264)
T PRK13546 232 PKYEAFLND 240 (264)
T ss_pred HHhHHHHHH
Confidence 754444333
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-24 Score=237.53 Aligned_cols=162 Identities=25% Similarity=0.333 Sum_probs=124.5
Q ss_pred eeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----------------EcCeEEEE
Q 000746 645 NGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----------------IRGTVAYV 708 (1303)
Q Consensus 645 ~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----------------~~~~iayv 708 (1303)
|++++|++. .+ |+||++++ |+++|+||||||||||+++|+|+++|++|.+.. .++.++|+
T Consensus 5 ~l~~~~~~~-~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~ 80 (214)
T cd03297 5 DIEKRLPDF-TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLV 80 (214)
T ss_pred eeeEecCCe-ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEE
Confidence 889999764 34 99999999 999999999999999999999999998874321 12369999
Q ss_pred ccCccccc-ccHHHHHccCCC-CC----hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-
Q 000746 709 PQISWIFN-ATLRKNILFGSE-FD----PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN- 781 (1303)
Q Consensus 709 ~Q~p~l~~-~TireNI~~g~~-~~----~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~- 781 (1303)
+|++.++. .|++||+.++.. .+ +++..+.++..++ .........+||||||||++||||++.
T Consensus 81 ~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrv~la~al~~~ 149 (214)
T cd03297 81 FQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGL-----------DHLLNRYPAQLSGGEKQRVALARALAAQ 149 (214)
T ss_pred ecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCC-----------HhHhhcCcccCCHHHHHHHHHHHHHhcC
Confidence 99999985 699999987642 12 1223333333333 233445667899999999999999542
Q ss_pred ----------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEec
Q 000746 782 ----------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEG 821 (1303)
Q Consensus 782 ----------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g 821 (1303)
+.+.+.. .++|+|++||+++.+. .||++++|++|+++++|
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 150 PELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 2333332 2789999999999875 69999999999998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-24 Score=252.25 Aligned_cols=183 Identities=24% Similarity=0.391 Sum_probs=139.0
Q ss_pred CCCcEEEEeeEEEeCC------C----CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------
Q 000746 637 ELPAVSIKNGNFSWDS------K----SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------ 700 (1303)
Q Consensus 637 ~~~~i~~~~~~f~~~~------~----~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------ 700 (1303)
..+.++++|++..|.. + ..+++||||++++||+++|||+||||||||.++|+|+.+|++|.+..
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~ 356 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLD 356 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccc
Confidence 3456889999999974 1 15799999999999999999999999999999999999997764332
Q ss_pred --------EcCeEEEEccCcccc---cccHHHHHccC----CCCC-h---hhHHHHHHHHhhHHHhhcCCCCCCccccCC
Q 000746 701 --------IRGTVAYVPQISWIF---NATLRKNILFG----SEFD-P---AKYWKTVDVSALQHDLDLLPDRDLTEIGER 761 (1303)
Q Consensus 701 --------~~~~iayv~Q~p~l~---~~TireNI~~g----~~~~-~---~~~~~vl~~~~l~~~i~~lp~g~~T~ige~ 761 (1303)
.+.++-++.|+|.-- ..||+++|.-. .... . ++..+.++..+|.++ .....
T Consensus 357 ~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~----------~l~ry 426 (539)
T COG1123 357 LTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPE----------FLDRY 426 (539)
T ss_pred cccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHH----------HHhcC
Confidence 124789999999742 57999999732 1221 1 223334555555432 23445
Q ss_pred CCCCchHHHHHHHHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCcccc-cCEEEEEeCC
Q 000746 762 GVNISGGQKQRVSMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLPH-VDRIILVSEG 815 (1303)
Q Consensus 762 G~~LSGGQkQRiaLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~~-aD~ii~l~~G 815 (1303)
...||||||||||||||+.. +.+.+.. -|.|.|+|||+++.+++ ||+|++|++|
T Consensus 427 P~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G 506 (539)
T COG1123 427 PHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDG 506 (539)
T ss_pred chhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECC
Confidence 67899999999999999531 1122222 37999999999999875 9999999999
Q ss_pred EEEEecCHHHHHhc
Q 000746 816 MIKEEGSFEELSKH 829 (1303)
Q Consensus 816 ~i~~~g~~~~l~~~ 829 (1303)
+|+|.|+.+++.++
T Consensus 507 ~iVE~G~~~~v~~~ 520 (539)
T COG1123 507 RIVEEGPTEKVFEN 520 (539)
T ss_pred eEEEeCCHHHHhcC
Confidence 99999999888765
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.2e-24 Score=264.75 Aligned_cols=177 Identities=24% Similarity=0.404 Sum_probs=138.6
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc--------------Ce
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR--------------GT 704 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~--------------~~ 704 (1303)
+.++++|++++|++ .++|+|+||++++|++++|+||||||||||+++|.|+++|++|.+ .+. ..
T Consensus 10 ~~l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 10 PLLCARSISKQYSG-VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTL-EIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred ceEEEEeEEEEeCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEECCCCCHHHHHhCC
Confidence 35999999999975 469999999999999999999999999999999999999998753 332 35
Q ss_pred EEEEccCccccc-ccHHHHHccCCCCC---hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHH
Q 000746 705 VAYVPQISWIFN-ATLRKNILFGSEFD---PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF 780 (1303)
Q Consensus 705 iayv~Q~p~l~~-~TireNI~~g~~~~---~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~ 780 (1303)
++|++|++.++. .|++||+.++.... +++..++++..++.+ .......+||||||||++||||+.
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~~qrv~la~aL~ 156 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQL-----------DLDSSAGSLEVADRQIVEILRGLM 156 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCc-----------cccCChhhCCHHHHHHHHHHHHHH
Confidence 999999998875 59999999875321 123333343333321 122345679999999999999964
Q ss_pred H-----------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHh
Q 000746 781 N-----------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 781 ~-----------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
. +.+++.. +++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 157 RDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 2 2333332 4789999999999875 599999999999999999988754
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-24 Score=228.51 Aligned_cols=137 Identities=31% Similarity=0.514 Sum_probs=115.9
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE--------------EcCeEE
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV--------------IRGTVA 706 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~--------------~~~~ia 706 (1303)
++++|+++.|++ .++++|+||++++||+++|+||||||||||+++|+|+++|++|.+.. .+..++
T Consensus 1 i~~~~l~~~~~~-~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (178)
T cd03229 1 LELKNVSKRYGQ-KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIG 79 (178)
T ss_pred CEEEEEEEEECC-eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEE
Confidence 468999999975 46999999999999999999999999999999999999998874321 124699
Q ss_pred EEccCccccc-ccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH----
Q 000746 707 YVPQISWIFN-ATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN---- 781 (1303)
Q Consensus 707 yv~Q~p~l~~-~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~---- 781 (1303)
|++|+|.++. .|++||+.+. ||||||||++||||+..
T Consensus 80 ~~~q~~~~~~~~t~~~~l~~~--------------------------------------lS~G~~qr~~la~al~~~p~l 121 (178)
T cd03229 80 MVFQDFALFPHLTVLENIALG--------------------------------------LSGGQQQRVALARALAMDPDV 121 (178)
T ss_pred EEecCCccCCCCCHHHheeec--------------------------------------CCHHHHHHHHHHHHHHCCCCE
Confidence 9999999885 5999999764 99999999999999542
Q ss_pred -------------------HHHhHhcC--CCEEEEEecCCCccc-ccCEEEEEeCCE
Q 000746 782 -------------------SCIKEELR--GKTRILVTNQLHFLP-HVDRIILVSEGM 816 (1303)
Q Consensus 782 -------------------~~i~~~~~--~~TvilvtH~~~~l~-~aD~ii~l~~G~ 816 (1303)
+.+.+..+ ++|+|++||+++.+. .+|++++|++|+
T Consensus 122 lilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 122 LLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 23333332 689999999999987 699999999984
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.2e-24 Score=249.30 Aligned_cols=185 Identities=25% Similarity=0.334 Sum_probs=140.8
Q ss_pred CcEEEEeeEEEeCCC--CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcCeEEEEccCcccc-
Q 000746 639 PAVSIKNGNFSWDSK--SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISWIF- 715 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~--~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~~iayv~Q~p~l~- 715 (1303)
+.++++|++|.|++. .++|+|+||+|++|++++|+||||||||||+++|+|+++|++| .+.+.+.-.++.+.+.+.
T Consensus 20 ~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sG-eI~I~G~~~~i~~~~~l~~ 98 (549)
T PRK13545 20 PFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKG-TVDIKGSAALIAISSGLNG 98 (549)
T ss_pred ceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCce-EEEECCEeeeEEeccccCC
Confidence 358899999999764 3689999999999999999999999999999999999999886 566776655666665555
Q ss_pred cccHHHHHccCC---CCChhhH----HHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-------
Q 000746 716 NATLRKNILFGS---EFDPAKY----WKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN------- 781 (1303)
Q Consensus 716 ~~TireNI~~g~---~~~~~~~----~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~------- 781 (1303)
..|++||+.++. ..++++. .++++.+++.+.+ .....+||||||||++||||+..
T Consensus 99 ~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~l-----------d~~~~~LSGGQrQRVaLArAL~~~P~LLLL 167 (549)
T PRK13545 99 QLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFI-----------YQPVKTYSSGMKSRLGFAISVHINPDILVI 167 (549)
T ss_pred CCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHh-----------hCCcccCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 459999998643 2333332 2344444443322 23456899999999999999642
Q ss_pred ----------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHhcchHHHH
Q 000746 782 ----------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSKHGRLFQK 835 (1303)
Q Consensus 782 ----------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~~~~~~~~ 835 (1303)
+.+.+.. +++|+|++||+++.+. .||++++|++|++++.|+++++...-..|.+
T Consensus 168 DEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~~~~~~~ 239 (549)
T PRK13545 168 DEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHYDEFLK 239 (549)
T ss_pred ECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhhHHHHHH
Confidence 2233322 4789999999999875 5999999999999999999998765444443
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.7e-25 Score=220.38 Aligned_cols=178 Identities=22% Similarity=0.347 Sum_probs=139.1
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-----------EcCeEEEEc
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-----------IRGTVAYVP 709 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-----------~~~~iayv~ 709 (1303)
+++.+++.+|++...+++|+||+++.||+++|.|+||+||||+|+.|.+++.|++|.+.. .+++||.++
T Consensus 2 l~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~ 81 (245)
T COG4555 2 LEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLF 81 (245)
T ss_pred eeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceec
Confidence 578899999987556899999999999999999999999999999999999999985432 467899998
Q ss_pred cCcccc-cccHHHHHccCCC-C--Ch----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH
Q 000746 710 QISWIF-NATLRKNILFGSE-F--DP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN 781 (1303)
Q Consensus 710 Q~p~l~-~~TireNI~~g~~-~--~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~ 781 (1303)
-+.-++ ..|+||||.|... + .. .+..+..+.-+|.+- ...+-.++|-|+||||+||||+++
T Consensus 82 ~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~-----------~~rRv~~~S~G~kqkV~iARAlvh 150 (245)
T COG4555 82 GERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEY-----------LDRRVGEFSTGMKQKVAIARALVH 150 (245)
T ss_pred CCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHH-----------HHHHHhhhchhhHHHHHHHHHHhc
Confidence 776676 5699999996532 2 22 233333333333322 223445699999999999999653
Q ss_pred -----------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHhc
Q 000746 782 -----------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 782 -----------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
+.+.... .|++||+.||.++.++ .||+|+++.+|+++..|+.+++.++
T Consensus 151 ~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 151 DPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred CCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 2233332 4899999999999987 7999999999999999999988653
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.7e-24 Score=268.49 Aligned_cols=181 Identities=18% Similarity=0.269 Sum_probs=137.8
Q ss_pred CcEEEEeeEEEeCC----------CCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE--------
Q 000746 639 PAVSIKNGNFSWDS----------KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-------- 700 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~----------~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-------- 700 (1303)
+.++++|+++.|+. ..++++|+||+|++||+++|+|+||||||||+++|+|+++|++|.+..
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~ 391 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTL 391 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcC
Confidence 46899999999962 135899999999999999999999999999999999999999875432
Q ss_pred -------EcCeEEEEccCcc--cc-cccHHHHHccCC---CC-Ch----hhHHHHHHHHhhHHHhhcCCCCCCccccCCC
Q 000746 701 -------IRGTVAYVPQISW--IF-NATLRKNILFGS---EF-DP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERG 762 (1303)
Q Consensus 701 -------~~~~iayv~Q~p~--l~-~~TireNI~~g~---~~-~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G 762 (1303)
.+..|+|++|+|. ++ +.||.||+.++. .. +. ++..+.++.+++.++ ......
T Consensus 392 ~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~----------~~~~~~ 461 (623)
T PRK10261 392 SPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPE----------HAWRYP 461 (623)
T ss_pred CHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHH----------HhhCCc
Confidence 1236999999984 55 569999997632 11 11 223344444444211 122344
Q ss_pred CCCchHHHHHHHHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCE
Q 000746 763 VNISGGQKQRVSMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGM 816 (1303)
Q Consensus 763 ~~LSGGQkQRiaLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~ 816 (1303)
.+||||||||++||||+.. +.+.+.. .+.|+|+|||+++.+. .||+|++|++|+
T Consensus 462 ~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~ 541 (623)
T PRK10261 462 HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQ 541 (623)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 6799999999999999542 2333332 3789999999999875 599999999999
Q ss_pred EEEecCHHHHHhc
Q 000746 817 IKEEGSFEELSKH 829 (1303)
Q Consensus 817 i~~~g~~~~l~~~ 829 (1303)
|++.|+.+++..+
T Consensus 542 iv~~g~~~~i~~~ 554 (623)
T PRK10261 542 IVEIGPRRAVFEN 554 (623)
T ss_pred EEEecCHHHHhcC
Confidence 9999999998754
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.1e-24 Score=228.45 Aligned_cols=137 Identities=30% Similarity=0.539 Sum_probs=114.6
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-------------EcCeEE
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-------------IRGTVA 706 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-------------~~~~ia 706 (1303)
.++++|++++| +++|+||++++|++++|+|+||||||||+++|.|+++|++|.... .++.++
T Consensus 4 ~l~~~~l~~~~-----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (182)
T cd03215 4 VLEVRGLSVKG-----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIA 78 (182)
T ss_pred EEEEeccEEEe-----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeE
Confidence 58999999998 899999999999999999999999999999999999999874321 124699
Q ss_pred EEccCc----ccccccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-
Q 000746 707 YVPQIS----WIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN- 781 (1303)
Q Consensus 707 yv~Q~p----~l~~~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~- 781 (1303)
|++|++ ..++.|++||+.++.. ||||||||++||||++.
T Consensus 79 ~~~q~~~~~~~~~~~t~~e~l~~~~~------------------------------------LS~G~~qrl~la~al~~~ 122 (182)
T cd03215 79 YVPEDRKREGLVLDLSVAENIALSSL------------------------------------LSGGNQQKVVLARWLARD 122 (182)
T ss_pred EecCCcccCcccCCCcHHHHHHHHhh------------------------------------cCHHHHHHHHHHHHHccC
Confidence 999985 3446899999987421 99999999999999532
Q ss_pred ----------------------HHHhHhc-CCCEEEEEecCCCcccc-cCEEEEEeCCEE
Q 000746 782 ----------------------SCIKEEL-RGKTRILVTNQLHFLPH-VDRIILVSEGMI 817 (1303)
Q Consensus 782 ----------------------~~i~~~~-~~~TvilvtH~~~~l~~-aD~ii~l~~G~i 817 (1303)
+.+.+.. +++|+|++||+++.+.. ||++++|++|++
T Consensus 123 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 123 PRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred CCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 3344432 47999999999988765 999999999974
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-23 Score=237.13 Aligned_cols=175 Identities=21% Similarity=0.263 Sum_probs=130.5
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcC--CCCCCCceEE----E--------c-Ce
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGE--LPPLKDASVV----I--------R-GT 704 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~--~~~~~g~~~~----~--------~-~~ 704 (1303)
.++++|+++.|++ .++|+|+||++++||+++|+|+||||||||+++|+|+ ++|++|.... + + ..
T Consensus 7 ~l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 85 (252)
T CHL00131 7 ILEIKNLHASVNE-NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLG 85 (252)
T ss_pred eEEEEeEEEEeCC-EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheee
Confidence 5899999999974 4699999999999999999999999999999999998 5788874321 0 1 14
Q ss_pred EEEEccCcccccc-cHHHHHccCCCC-------C---h----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCC-CCchH
Q 000746 705 VAYVPQISWIFNA-TLRKNILFGSEF-------D---P----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGV-NISGG 768 (1303)
Q Consensus 705 iayv~Q~p~l~~~-TireNI~~g~~~-------~---~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~-~LSGG 768 (1303)
++|++|++.++.+ |+++|+.++... + . +++.++++.+++.+ +....... .||||
T Consensus 86 ~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~~LSgG 155 (252)
T CHL00131 86 IFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDP----------SFLSRNVNEGFSGG 155 (252)
T ss_pred EEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCch----------hhhccccccCCCHH
Confidence 8899999998865 899998764210 1 1 11222233222221 11223333 49999
Q ss_pred HHHHHHHHHHHHH-----------------------HHHhHhc-CCCEEEEEecCCCcccc--cCEEEEEeCCEEEEecC
Q 000746 769 QKQRVSMARAVFN-----------------------SCIKEEL-RGKTRILVTNQLHFLPH--VDRIILVSEGMIKEEGS 822 (1303)
Q Consensus 769 QkQRiaLARAl~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~~--aD~ii~l~~G~i~~~g~ 822 (1303)
||||++||||++. +.+.+.. +++|+|++||+++.+.. +|++++|++|++++.|+
T Consensus 156 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~ 235 (252)
T CHL00131 156 EKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGD 235 (252)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecC
Confidence 9999999999642 2344433 47999999999998864 89999999999999998
Q ss_pred HHH
Q 000746 823 FEE 825 (1303)
Q Consensus 823 ~~~ 825 (1303)
++.
T Consensus 236 ~~~ 238 (252)
T CHL00131 236 AEL 238 (252)
T ss_pred hhh
Confidence 874
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.5e-24 Score=224.61 Aligned_cols=185 Identities=23% Similarity=0.358 Sum_probs=139.7
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc--------------CeE
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR--------------GTV 705 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~--------------~~i 705 (1303)
.+++++++.+|.+ -.+++|+||++++||+++++||||+||||++++|.|.|+|++|. +.++ ..|
T Consensus 4 lL~v~~l~k~FGG-l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~-v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 4 LLEVRGLSKRFGG-LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGT-VIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred eeeeccceeecCC-EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCce-EEECCcccCCCCHHHHHhccc
Confidence 3678999999975 36899999999999999999999999999999999999999874 4333 358
Q ss_pred EEEccCccccc-ccHHHHHccCCCCC--------h----hhHHHHHHH-HhhHHHhhcCCCCCCccccCCCCCCchHHHH
Q 000746 706 AYVPQISWIFN-ATLRKNILFGSEFD--------P----AKYWKTVDV-SALQHDLDLLPDRDLTEIGERGVNISGGQKQ 771 (1303)
Q Consensus 706 ayv~Q~p~l~~-~TireNI~~g~~~~--------~----~~~~~vl~~-~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQ 771 (1303)
+--+|.+-+|. .|+-||+..+.... . .+..++.+. -.+.+.+ |+.-.-.+...+||+||+.
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~v-----gL~~~a~~~A~~LsyG~qR 156 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFV-----GLGELADRPAGNLSYGQQR 156 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHc-----CCchhhcchhhcCChhHhH
Confidence 99999999995 59999999763200 0 011111111 1111221 2333334566789999999
Q ss_pred HHHHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHH
Q 000746 772 RVSMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEE 825 (1303)
Q Consensus 772 RiaLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~ 825 (1303)
|+-||||+.. +.|++.. .+.|+++|-|+++.+ ..||||+||+.|+++.+|+|+|
T Consensus 157 ~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~e 236 (250)
T COG0411 157 RLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEE 236 (250)
T ss_pred HHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHH
Confidence 9999999531 2344444 358999999999985 5699999999999999999999
Q ss_pred HHhcch
Q 000746 826 LSKHGR 831 (1303)
Q Consensus 826 l~~~~~ 831 (1303)
..+++.
T Consensus 237 V~~dp~ 242 (250)
T COG0411 237 VRNNPR 242 (250)
T ss_pred HhcCHH
Confidence 987653
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=99.91 E-value=3e-24 Score=233.94 Aligned_cols=158 Identities=26% Similarity=0.366 Sum_probs=121.1
Q ss_pred EEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----------------EcCeEE
Q 000746 643 IKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----------------IRGTVA 706 (1303)
Q Consensus 643 ~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----------------~~~~ia 706 (1303)
++|+++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. .++.++
T Consensus 1 i~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 79 (206)
T TIGR03608 1 LKNISKKFGD-KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLG 79 (206)
T ss_pred CcceEEEECC-EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCee
Confidence 4689999974 46999999999999999999999999999999999999999875321 123699
Q ss_pred EEccCccccc-ccHHHHHccCCC---CC----hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHH
Q 000746 707 YVPQISWIFN-ATLRKNILFGSE---FD----PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARA 778 (1303)
Q Consensus 707 yv~Q~p~l~~-~TireNI~~g~~---~~----~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARA 778 (1303)
|++|++.++. .|++||+.++.. .+ ++++.+.++..++.+. ......+||||||||++||||
T Consensus 80 ~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~lS~G~~qr~~lara 148 (206)
T TIGR03608 80 YLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLK-----------LKQKIYELSGGEQQRVALARA 148 (206)
T ss_pred EEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhh-----------hcCChhhCCHHHHHHHHHHHH
Confidence 9999999986 699999987532 11 2233344444444322 233456799999999999999
Q ss_pred HHH-----------------------HHHhHhc-CCCEEEEEecCCCcccccCEEEEE
Q 000746 779 VFN-----------------------SCIKEEL-RGKTRILVTNQLHFLPHVDRIILV 812 (1303)
Q Consensus 779 l~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~~aD~ii~l 812 (1303)
++. +.+++.. +++|+|++||+++....||+|++|
T Consensus 149 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 149 ILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 642 2333332 479999999999988889999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.2e-25 Score=218.63 Aligned_cols=176 Identities=27% Similarity=0.419 Sum_probs=137.4
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc-------------CeEEE
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR-------------GTVAY 707 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~-------------~~iay 707 (1303)
|+++|++.+|.+ +.+++|+|++|++|.+++++||||+||||||..+.+++++++|. +.++ +.++.
T Consensus 2 I~i~nv~K~y~~-~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~-i~i~g~~~~~~~s~~LAk~lSI 79 (252)
T COG4604 2 ITIENVSKSYGT-KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGE-ITIDGLELTSTPSKELAKKLSI 79 (252)
T ss_pred eeehhhhHhhCC-EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCce-EEEeeeecccCChHHHHHHHHH
Confidence 678999999975 47999999999999999999999999999999999999999974 4433 35788
Q ss_pred EccCcccc-cccHHHHHccCC-CCChh--------hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHH
Q 000746 708 VPQISWIF-NATLRKNILFGS-EFDPA--------KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMAR 777 (1303)
Q Consensus 708 v~Q~p~l~-~~TireNI~~g~-~~~~~--------~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLAR 777 (1303)
.-|+..+- .-||||=+.||+ ||+.. .++++++--.|. .+.+.+ -..||||||||.-+|-
T Consensus 80 LkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~----~l~dry-------Ld~LSGGQrQRAfIAM 148 (252)
T COG4604 80 LKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLE----DLSDRY-------LDELSGGQRQRAFIAM 148 (252)
T ss_pred HHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhccc----chHHHh-------HHhcccchhhhhhhhe
Confidence 88988876 569999999998 66532 233444333332 222222 2359999999999998
Q ss_pred HHHH-----------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHhc
Q 000746 778 AVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 778 Al~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
.+-+ +.+++.. -+||+|+|-|+.++.. ++|+|+.|++|+++.+|+++|+++.
T Consensus 149 VlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~ 226 (252)
T COG4604 149 VLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP 226 (252)
T ss_pred eeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCH
Confidence 7321 1222221 3899999999999975 6999999999999999999999864
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-23 Score=235.08 Aligned_cols=169 Identities=22% Similarity=0.386 Sum_probs=128.7
Q ss_pred EEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc-------------CeEEEE
Q 000746 642 SIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR-------------GTVAYV 708 (1303)
Q Consensus 642 ~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~-------------~~iayv 708 (1303)
+++|+++. .+|+|+||++++|++++|+|+||||||||+++|+|.+++ +|. +.+. ..++|+
T Consensus 2 ~~~~l~~~-----~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~-i~~~g~~i~~~~~~~~~~~i~~v 74 (248)
T PRK03695 2 QLNDVAVS-----TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGS-IQFAGQPLEAWSAAELARHRAYL 74 (248)
T ss_pred cccccchh-----ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeE-EEECCEecCcCCHHHHhhheEEe
Confidence 46677764 279999999999999999999999999999999999864 663 3332 348999
Q ss_pred ccCcc-cccccHHHHHccCCCC--Ch----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH
Q 000746 709 PQISW-IFNATLRKNILFGSEF--DP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN 781 (1303)
Q Consensus 709 ~Q~p~-l~~~TireNI~~g~~~--~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~ 781 (1303)
+|++. .++.|++||+.++.+. +. ++..++++..++.+ ........||||||||++||||+..
T Consensus 75 ~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~la~al~~ 143 (248)
T PRK03695 75 SQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDD-----------KLGRSVNQLSGGEWQRVRLAAVVLQ 143 (248)
T ss_pred cccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHh-----------HhcCCcccCCHHHHHHHHHHHHHhc
Confidence 99985 4578999999986432 11 23344444444432 2234557899999999999999984
Q ss_pred ---------H---------------------HHhHhc-CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHHh
Q 000746 782 ---------S---------------------CIKEEL-RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 782 ---------~---------------------~i~~~~-~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
+ .+.+.. +++|+|++||+++.+ ..||++++|++|++++.|+++++..
T Consensus 144 ~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 144 VWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred cccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 1 122222 478999999999965 5699999999999999999988754
|
|
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.9e-24 Score=228.39 Aligned_cols=147 Identities=22% Similarity=0.317 Sum_probs=118.6
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcC--CCCCCCceEE-------------EcCeE
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGE--LPPLKDASVV-------------IRGTV 705 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~--~~~~~g~~~~-------------~~~~i 705 (1303)
++++|++++|++ .++++|+||++++||+++|+|+||||||||+++|+|+ ++|++|.+.. .+..+
T Consensus 1 l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (200)
T cd03217 1 LEIKDLHVSVGG-KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGI 79 (200)
T ss_pred CeEEEEEEEeCC-EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcE
Confidence 468999999974 4799999999999999999999999999999999999 4788874321 12349
Q ss_pred EEEccCcccccc-cHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH---
Q 000746 706 AYVPQISWIFNA-TLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN--- 781 (1303)
Q Consensus 706 ayv~Q~p~l~~~-TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~--- 781 (1303)
+|++|+|.++++ |+++|+ + ....+||||||||++||||+..
T Consensus 80 ~~v~q~~~~~~~~~~~~~l------------------------~-----------~~~~~LS~G~~qrv~laral~~~p~ 124 (200)
T cd03217 80 FLAFQYPPEIPGVKNADFL------------------------R-----------YVNEGFSGGEKKRNEILQLLLLEPD 124 (200)
T ss_pred EEeecChhhccCccHHHHH------------------------h-----------hccccCCHHHHHHHHHHHHHhcCCC
Confidence 999999998875 555554 0 0124699999999999999542
Q ss_pred --------------------HHHhHhc-CCCEEEEEecCCCccc--ccCEEEEEeCCEEEEecCH
Q 000746 782 --------------------SCIKEEL-RGKTRILVTNQLHFLP--HVDRIILVSEGMIKEEGSF 823 (1303)
Q Consensus 782 --------------------~~i~~~~-~~~TvilvtH~~~~l~--~aD~ii~l~~G~i~~~g~~ 823 (1303)
+.+.+.. +++|+|++||+++.+. .||++++|++|++.+.|+.
T Consensus 125 illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~~~ 189 (200)
T cd03217 125 LAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDK 189 (200)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEccH
Confidence 2343333 4789999999999987 6999999999999999843
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.8e-24 Score=210.74 Aligned_cols=172 Identities=26% Similarity=0.438 Sum_probs=128.6
Q ss_pred EEEEeeEEEeCCCC-CccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcC--------eEEEEccC
Q 000746 641 VSIKNGNFSWDSKS-PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRG--------TVAYVPQI 711 (1303)
Q Consensus 641 i~~~~~~f~~~~~~-~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~--------~iayv~Q~ 711 (1303)
+.+++++.+|+... ++|+|+|++|.+||++++.|||||||||||+++.|+++|..| .+.+++ .=|.|.|+
T Consensus 4 l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G-~i~l~~r~i~gPgaergvVFQ~ 82 (259)
T COG4525 4 LNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRG-SIQLNGRRIEGPGAERGVVFQN 82 (259)
T ss_pred eehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccc-eEEECCEeccCCCccceeEecc
Confidence 45678899997654 599999999999999999999999999999999999999987 454443 46999999
Q ss_pred ccccc-ccHHHHHccCCC---CChhh----HHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHH---
Q 000746 712 SWIFN-ATLRKNILFGSE---FDPAK----YWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF--- 780 (1303)
Q Consensus 712 p~l~~-~TireNI~~g~~---~~~~~----~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~--- 780 (1303)
+-|+. .++.||+.||-. .++.. ..+.+..++|.+ -++ ..-..||||||||+.||||+-
T Consensus 83 ~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~-------~~~----~~i~qLSGGmrQRvGiARALa~eP 151 (259)
T COG4525 83 EALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEG-------AEH----KYIWQLSGGMRQRVGIARALAVEP 151 (259)
T ss_pred CccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCccc-------ccc----cceEeecchHHHHHHHHHHhhcCc
Confidence 88774 699999999964 33322 122222233321 111 223579999999999999941
Q ss_pred -----H-----------HHHhH----h--cCCCEEEEEecCCCc-ccccCEEEEEe--CCEEEEecCHH
Q 000746 781 -----N-----------SCIKE----E--LRGKTRILVTNQLHF-LPHVDRIILVS--EGMIKEEGSFE 824 (1303)
Q Consensus 781 -----~-----------~~i~~----~--~~~~TvilvtH~~~~-l~~aD~ii~l~--~G~i~~~g~~~ 824 (1303)
| +.+.+ . ..|+-+++|||+++. +-.|+++++|+ .|+|++.-+++
T Consensus 152 ~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 152 QLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred ceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCCC
Confidence 1 11222 1 158999999999987 55699999996 78999865543
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4e-24 Score=225.05 Aligned_cols=161 Identities=28% Similarity=0.451 Sum_probs=133.3
Q ss_pred eeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----------------EcCeEEEEccCcccc-cccHHH
Q 000746 659 NINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----------------IRGTVAYVPQISWIF-NATLRK 721 (1303)
Q Consensus 659 ~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----------------~~~~iayv~Q~p~l~-~~Tire 721 (1303)
++||+.+...++||-|+||||||||+++|.|+..|++|.+.. -+++||||+||.-|| +.|||.
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 688999887899999999999999999999999999974321 135799999999999 679999
Q ss_pred HHccCCCCC-hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHHH--------H---------
Q 000746 722 NILFGSEFD-PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFNS--------C--------- 783 (1303)
Q Consensus 722 NI~~g~~~~-~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~~--------~--------- 783 (1303)
|+.||.... .+.+.+++..-++.+-++..| .+||||+||||||+||++.+ -
T Consensus 96 NL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P-----------~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK 164 (352)
T COG4148 96 NLRYGMWKSMRAQFDQLVALLGIEHLLDRYP-----------GTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRK 164 (352)
T ss_pred chhhhhcccchHhHHHHHHHhCcHHHHhhCC-----------CccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchh
Confidence 999998654 567788888888888777776 56999999999999996531 1
Q ss_pred ------HhHhc--CCCEEEEEecCCCc-ccccCEEEEEeCCEEEEecCHHHHHhcc
Q 000746 784 ------IKEEL--RGKTRILVTNQLHF-LPHVDRIILVSEGMIKEEGSFEELSKHG 830 (1303)
Q Consensus 784 ------i~~~~--~~~TvilvtH~~~~-l~~aD~ii~l~~G~i~~~g~~~~l~~~~ 830 (1303)
+++.. -+--++.|||.++. ++.||+|++|++|++...|..++..++.
T Consensus 165 ~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~ 220 (352)
T COG4148 165 REILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSP 220 (352)
T ss_pred hHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCc
Confidence 11111 25679999999987 5679999999999999999999987653
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.8e-24 Score=262.41 Aligned_cols=180 Identities=20% Similarity=0.288 Sum_probs=134.7
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-------------EcCeEE
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-------------IRGTVA 706 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-------------~~~~ia 706 (1303)
.++++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+.. .+..++
T Consensus 4 ~i~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 82 (501)
T PRK10762 4 LLQLKGIDKAFPG-VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIG 82 (501)
T ss_pred eEEEeeeEEEeCC-eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEE
Confidence 4899999999964 46999999999999999999999999999999999999999875432 023599
Q ss_pred EEccCccccc-ccHHHHHccCCCC-------ChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHH
Q 000746 707 YVPQISWIFN-ATLRKNILFGSEF-------DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARA 778 (1303)
Q Consensus 707 yv~Q~p~l~~-~TireNI~~g~~~-------~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARA 778 (1303)
|++|++.++. .|++||+.++... +.++.++.+ .+.++.+. ..........+||||||||++||||
T Consensus 83 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~--l~~~~~~~~~~LSgG~~qrv~la~a 155 (501)
T PRK10762 83 IIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEA-----DKLLARLN--LRFSSDKLVGELSIGEQQMVEIAKV 155 (501)
T ss_pred EEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHH-----HHHHHHcC--CCCCccCchhhCCHHHHHHHHHHHH
Confidence 9999998775 5999999986431 221111111 11122221 1111223446799999999999999
Q ss_pred HHH-----------------------HHHhHh-cCCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHH
Q 000746 779 VFN-----------------------SCIKEE-LRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELS 827 (1303)
Q Consensus 779 l~~-----------------------~~i~~~-~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~ 827 (1303)
+.. +.+.+. -+++|+|++||+++.+. .||+|++|++|++++.|+.+++.
T Consensus 156 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (501)
T PRK10762 156 LSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLT 229 (501)
T ss_pred HhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCC
Confidence 642 223332 24789999999999875 69999999999999999887753
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-23 Score=233.77 Aligned_cols=178 Identities=20% Similarity=0.274 Sum_probs=126.2
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCC--CCCCCceEE-------------EcCeE
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGEL--PPLKDASVV-------------IRGTV 705 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~--~~~~g~~~~-------------~~~~i 705 (1303)
++++|+++.|++ .++++|+||+|++|++++|+|+||||||||+++|+|+. +|++|.+.. .+..+
T Consensus 2 i~~~nl~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (248)
T PRK09580 2 LSIKDLHVSVED-KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGI 80 (248)
T ss_pred eEEEEEEEEeCC-eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcce
Confidence 689999999975 46999999999999999999999999999999999995 688874321 01359
Q ss_pred EEEccCcccccc-cHHHHHccC-------CC---CChhhHHHHHHHHhhHHHhh--cCCCCCCccccCCCCCCchHHHHH
Q 000746 706 AYVPQISWIFNA-TLRKNILFG-------SE---FDPAKYWKTVDVSALQHDLD--LLPDRDLTEIGERGVNISGGQKQR 772 (1303)
Q Consensus 706 ayv~Q~p~l~~~-TireNI~~g-------~~---~~~~~~~~vl~~~~l~~~i~--~lp~g~~T~ige~G~~LSGGQkQR 772 (1303)
+|++|++.++.. |..+++.+. .. .+.....+. +++.++ .+|+++.+... ..+||||||||
T Consensus 81 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~--~~~LS~G~~qr 153 (248)
T PRK09580 81 FMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDL-----MEEKIALLKMPEDLLTRSV--NVGFSGGEKKR 153 (248)
T ss_pred EEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHH-----HHHHHHHcCCChhhcccCC--CCCCCHHHHHH
Confidence 999999987653 555554321 10 010011111 111111 23433333211 13699999999
Q ss_pred HHHHHHHHH-----------------------HHHhHhc-CCCEEEEEecCCCcccc--cCEEEEEeCCEEEEecCHHHH
Q 000746 773 VSMARAVFN-----------------------SCIKEEL-RGKTRILVTNQLHFLPH--VDRIILVSEGMIKEEGSFEEL 826 (1303)
Q Consensus 773 iaLARAl~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~~--aD~ii~l~~G~i~~~g~~~~l 826 (1303)
++||||++. +.++... .++|+|++||+++.+.. +|+|++|++|++++.|+++..
T Consensus 154 v~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 233 (248)
T PRK09580 154 NDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLV 233 (248)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHHH
Confidence 999999642 2233332 37899999999999876 899999999999999998754
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.2e-24 Score=266.00 Aligned_cols=174 Identities=27% Similarity=0.382 Sum_probs=132.6
Q ss_pred CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCC---CCceEEEc----------CeEEEEccCcccc-cccH
Q 000746 654 SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPL---KDASVVIR----------GTVAYVPQISWIF-NATL 719 (1303)
Q Consensus 654 ~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~---~g~~~~~~----------~~iayv~Q~p~l~-~~Ti 719 (1303)
+++|+|+|+++++||+++|+||||||||||+++|.|+.++. +| .+.++ +.++||+|+++++ +.||
T Consensus 38 ~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G-~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV 116 (617)
T TIGR00955 38 KHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSG-SVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTV 116 (617)
T ss_pred cccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccee-EEEECCEECCHHHHhhhceeeccccccCccCcH
Confidence 47999999999999999999999999999999999998774 34 45443 3589999999998 5699
Q ss_pred HHHHccCCCCCh-hhHHHHHHHHhhHHHhhc--CCCCCCccccCC--CCCCchHHHHHHHHHHHHHH-------------
Q 000746 720 RKNILFGSEFDP-AKYWKTVDVSALQHDLDL--LPDRDLTEIGER--GVNISGGQKQRVSMARAVFN------------- 781 (1303)
Q Consensus 720 reNI~~g~~~~~-~~~~~vl~~~~l~~~i~~--lp~g~~T~ige~--G~~LSGGQkQRiaLARAl~~------------- 781 (1303)
+|||.|+..... ..+.+.-+....++.++. +++..+|.||+. +..||||||||++||||++.
T Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsg 196 (617)
T TIGR00955 117 REHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSG 196 (617)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcc
Confidence 999998653221 000000111122333333 445678999985 47899999999999999642
Q ss_pred ----------HHHhHhc-CCCEEEEEecCCC--cccccCEEEEEeCCEEEEecCHHHHHh
Q 000746 782 ----------SCIKEEL-RGKTRILVTNQLH--FLPHVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 782 ----------~~i~~~~-~~~TvilvtH~~~--~l~~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
+.+++.. +|+|+|+++|+++ ..+.+|++++|++|+++++|+++++.+
T Consensus 197 LD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~ 256 (617)
T TIGR00955 197 LDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVP 256 (617)
T ss_pred hhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHH
Confidence 2233332 5899999999996 367899999999999999999998753
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=99.91 E-value=6e-24 Score=234.99 Aligned_cols=158 Identities=25% Similarity=0.395 Sum_probs=120.3
Q ss_pred cceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcC--------eEEEEccCccccc-ccHHHHHccCC
Q 000746 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRG--------TVAYVPQISWIFN-ATLRKNILFGS 727 (1303)
Q Consensus 657 L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~--------~iayv~Q~p~l~~-~TireNI~~g~ 727 (1303)
|+|+||+|++||+++|+||||||||||+++|+|+++|++|. +.+.+ ..+|++|++.++. .|++||+.++.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~ 79 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGG-VILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAV 79 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHH
Confidence 57999999999999999999999999999999999999874 43332 2589999999886 69999998742
Q ss_pred -----CCChh----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-----------------
Q 000746 728 -----EFDPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN----------------- 781 (1303)
Q Consensus 728 -----~~~~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~----------------- 781 (1303)
..+++ +..+.++.+++.+. .......||||||||++||||+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~ 148 (230)
T TIGR01184 80 DRVLPDLSKSERRAIVEEHIALVGLTEA-----------ADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDAL 148 (230)
T ss_pred HhcccCCCHHHHHHHHHHHHHHcCCHHH-----------HcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHH
Confidence 12222 23333444444322 233456799999999999999642
Q ss_pred ------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHH
Q 000746 782 ------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEEL 826 (1303)
Q Consensus 782 ------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l 826 (1303)
+.+.+.. .++|+|++||+++.+. .||+|++|++|++++.|+..++
T Consensus 149 ~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 149 TRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 2333332 3789999999999864 5999999999999988866544
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7e-24 Score=232.43 Aligned_cols=191 Identities=25% Similarity=0.416 Sum_probs=134.8
Q ss_pred EEEEeeEEEeCCCC---CccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCC-C---CCCceEEE------------
Q 000746 641 VSIKNGNFSWDSKS---PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELP-P---LKDASVVI------------ 701 (1303)
Q Consensus 641 i~~~~~~f~~~~~~---~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~-~---~~g~~~~~------------ 701 (1303)
++++|++..|.... .+++||||++++||.++|||.|||||||+.++|+|+++ + ..+|.+.+
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 57899999986543 68999999999999999999999999999999999998 3 12223322
Q ss_pred -----cCeEEEEccCccc-cc--ccHHHHH----ccCCCC-C----hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCC
Q 000746 702 -----RGTVAYVPQISWI-FN--ATLRKNI----LFGSEF-D----PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVN 764 (1303)
Q Consensus 702 -----~~~iayv~Q~p~l-~~--~TireNI----~~g~~~-~----~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~ 764 (1303)
.+.|+|++|+|-- +| -||.+-| ...... + .++..+.++..++.+. +..+..-...
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~--------~~~~~~YPhe 153 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDP--------ERRLKSYPHE 153 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCH--------HHHHhhCCcc
Confidence 2369999999852 23 2444443 322222 1 1233334444444321 1123445678
Q ss_pred CchHHHHHHHHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCcc-cccCEEEEEeCCEEE
Q 000746 765 ISGGQKQRVSMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFL-PHVDRIILVSEGMIK 818 (1303)
Q Consensus 765 LSGGQkQRiaLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~ 818 (1303)
||||||||+.||-|+.. +.+++.. .+.|+|+|||++..+ ..||+|.||.+|+|+
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iV 233 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIV 233 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEE
Confidence 99999999999999531 1222222 589999999999986 569999999999999
Q ss_pred EecCHHHHHhcc--hHHHHHHHH
Q 000746 819 EEGSFEELSKHG--RLFQKLMEN 839 (1303)
Q Consensus 819 ~~g~~~~l~~~~--~~~~~l~~~ 839 (1303)
|.|+.+++.++. .+-+.|+..
T Consensus 234 E~g~~~~i~~~P~HPYT~~Ll~s 256 (316)
T COG0444 234 EEGPVEEIFKNPKHPYTRGLLNS 256 (316)
T ss_pred EeCCHHHHhcCCCChHHHHHHHh
Confidence 999999998764 445555544
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-23 Score=232.78 Aligned_cols=165 Identities=25% Similarity=0.393 Sum_probs=124.6
Q ss_pred ccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCC----CCCceEEE-----------cCeEEEEccCcc-ccc--c
Q 000746 656 TLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP----LKDASVVI-----------RGTVAYVPQISW-IFN--A 717 (1303)
Q Consensus 656 ~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~----~~g~~~~~-----------~~~iayv~Q~p~-l~~--~ 717 (1303)
+++|+||++++|++++|+||||||||||+++|+|+++| ++|.+ .+ +..++|++|+|. .|+ .
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i-~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 79 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEI-LLDGRPLLPLSIRGRHIATIMQNPRTAFNPLF 79 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEE-EECCEechhhhhhhheeEEEecCchhhcCccc
Confidence 57899999999999999999999999999999999998 77643 32 247999999995 343 5
Q ss_pred cHHHHHccCCC----CC---hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH---------
Q 000746 718 TLRKNILFGSE----FD---PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN--------- 781 (1303)
Q Consensus 718 TireNI~~g~~----~~---~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~--------- 781 (1303)
|+.||+.+... .. ++++.+.++.+++. ++ .+.......+||||||||++||||+..
T Consensus 80 t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~-~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDE 151 (230)
T TIGR02770 80 TMGNHAIETLRSLGKLSKQARALILEALEAVGLP-------DP-EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADE 151 (230)
T ss_pred CHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCC-------ch-HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 99999865321 11 12233344443332 11 133455667899999999999999542
Q ss_pred --------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHhc
Q 000746 782 --------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 782 --------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
+.+.+.. .++|+|++||+++.+. .||++++|++|++.+.|+++++...
T Consensus 152 Pt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 216 (230)
T TIGR02770 152 PTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYN 216 (230)
T ss_pred CccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 2344433 3789999999999885 6999999999999999999998653
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-23 Score=227.55 Aligned_cols=163 Identities=19% Similarity=0.296 Sum_probs=123.9
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc----------CeEEEE
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR----------GTVAYV 708 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~----------~~iayv 708 (1303)
+.++++|++++|++ .++++|+||++++||+++|+|+||||||||+++|.|+++|++|. +.++ +.++|+
T Consensus 10 ~~l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~-i~~~g~~i~~~~~~~~i~~~ 87 (214)
T PRK13543 10 PLLAAHALAFSRNE-EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQ-IQIDGKTATRGDRSRFMAYL 87 (214)
T ss_pred ceEEEeeEEEecCC-ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCee-EEECCEEccchhhhhceEEe
Confidence 46899999999975 46999999999999999999999999999999999999999874 3333 249999
Q ss_pred ccCcccccc-cHHHHHccCCCC----ChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH--
Q 000746 709 PQISWIFNA-TLRKNILFGSEF----DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN-- 781 (1303)
Q Consensus 709 ~Q~p~l~~~-TireNI~~g~~~----~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~-- 781 (1303)
+|++.++.. |++||+.++... .+++..+.++..++ ++. ......+||||||||++||||++.
T Consensus 88 ~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l-------~~~----~~~~~~~LS~G~~qrv~laral~~~p 156 (214)
T PRK13543 88 GHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGL-------AGY----EDTLVRQLSAGQKKRLALARLWLSPA 156 (214)
T ss_pred ecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCC-------hhh----ccCChhhCCHHHHHHHHHHHHHhcCC
Confidence 999988875 999999765322 12222333333222 222 223446799999999999999542
Q ss_pred ---------------------HHHhHh-cCCCEEEEEecCCCccc-ccCEEEEEeC
Q 000746 782 ---------------------SCIKEE-LRGKTRILVTNQLHFLP-HVDRIILVSE 814 (1303)
Q Consensus 782 ---------------------~~i~~~-~~~~TvilvtH~~~~l~-~aD~ii~l~~ 814 (1303)
+.+.+. .+++|+|++||+++.+. .+|++++++.
T Consensus 157 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 157 PLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 233332 24799999999999874 6899999864
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-23 Score=229.47 Aligned_cols=166 Identities=17% Similarity=0.199 Sum_probs=124.9
Q ss_pred ccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcCeEEEEccCcccccc-cHHHHHccCCC---CCh
Q 000746 656 TLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISWIFNA-TLRKNILFGSE---FDP 731 (1303)
Q Consensus 656 ~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~~iayv~Q~p~l~~~-TireNI~~g~~---~~~ 731 (1303)
+|+|+||+|++|++++|+||||||||||+++|+|+++|.+|.+..+++....+.|++.++.. |++||+.+... .+.
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~ 81 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDG 81 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCH
Confidence 68999999999999999999999999999999999999998654355554456677888864 99999986432 333
Q ss_pred hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-----------------------HHHhHhc
Q 000746 732 AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN-----------------------SCIKEEL 788 (1303)
Q Consensus 732 ~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~-----------------------~~i~~~~ 788 (1303)
++..+.+ .+...+++..++.+ ..||||||||++||||++. +.+.+..
T Consensus 82 ~~~~~~~------~~~~~l~~~~~~~~----~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~ 151 (213)
T PRK15177 82 DEFSHFC------YQLTQLEQCYTDRV----SEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQL 151 (213)
T ss_pred HHHHHHH------HHHhChhHHhhchH----hhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHh
Confidence 3332221 11222333334433 4599999999999999542 2233344
Q ss_pred CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHhcch
Q 000746 789 RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSKHGR 831 (1303)
Q Consensus 789 ~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~~~~ 831 (1303)
+++|+|++||+++.+. .||++++|++|++++.|+.++..+..+
T Consensus 152 ~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 195 (213)
T PRK15177 152 QQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATALFE 195 (213)
T ss_pred hCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHHHHH
Confidence 6789999999999875 699999999999999999988764433
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-23 Score=226.30 Aligned_cols=159 Identities=26% Similarity=0.376 Sum_probs=120.8
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-----------EcCeEEEEc
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-----------IRGTVAYVP 709 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-----------~~~~iayv~ 709 (1303)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+.+|++|.+.. .+++++|++
T Consensus 2 l~~~~l~~~~~~-~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~ 80 (200)
T PRK13540 2 LDVIELDFDYHD-QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVG 80 (200)
T ss_pred EEEEEEEEEeCC-eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEec
Confidence 688999999975 46999999999999999999999999999999999999999874321 124699999
Q ss_pred cCcccc-cccHHHHHccCCCC--ChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-----
Q 000746 710 QISWIF-NATLRKNILFGSEF--DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN----- 781 (1303)
Q Consensus 710 Q~p~l~-~~TireNI~~g~~~--~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~----- 781 (1303)
|++.++ ..|++||+.++... ++.+..+.++..++. +. ......+||||||||++||||+..
T Consensus 81 q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~----~~~~~~~LS~G~~~rv~laral~~~p~~l 149 (200)
T PRK13540 81 HRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLE-------HL----IDYPCGLLSSGQKRQVALLRLWMSKAKLW 149 (200)
T ss_pred cccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCc-------hh----hhCChhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 999886 67999999986321 222333333333222 11 122335799999999999999542
Q ss_pred ------------------HHHhHh-cCCCEEEEEecCCCcccccCEEEE
Q 000746 782 ------------------SCIKEE-LRGKTRILVTNQLHFLPHVDRIIL 811 (1303)
Q Consensus 782 ------------------~~i~~~-~~~~TvilvtH~~~~l~~aD~ii~ 811 (1303)
+.+++. .+++|+|++||+.+.+..||.-++
T Consensus 150 ilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 150 LLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred EEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 234433 247899999999999999997654
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-23 Score=258.51 Aligned_cols=184 Identities=22% Similarity=0.351 Sum_probs=136.2
Q ss_pred CcEEEEeeEEEeCC----CCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE-------------
Q 000746 639 PAVSIKNGNFSWDS----KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI------------- 701 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~----~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~------------- 701 (1303)
+.++++|++++|++ +.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+..-
T Consensus 278 ~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~ 357 (520)
T TIGR03269 278 PIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGP 357 (520)
T ss_pred ceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccch
Confidence 46999999999953 2369999999999999999999999999999999999999988754321
Q ss_pred ------cCeEEEEccCccccc-ccHHHHHccCCC--CChh----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchH
Q 000746 702 ------RGTVAYVPQISWIFN-ATLRKNILFGSE--FDPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGG 768 (1303)
Q Consensus 702 ------~~~iayv~Q~p~l~~-~TireNI~~g~~--~~~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGG 768 (1303)
+.+|+|++|++.++. .|++||+.++.. .+.+ +..+.++.+++.+. ..+.........||||
T Consensus 358 ~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~~~~~~LSgG 431 (520)
T TIGR03269 358 DGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEE------KAEEILDKYPDELSEG 431 (520)
T ss_pred hhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCc------cchhhhhCChhhCCHH
Confidence 134999999998775 599999985321 1111 22223333322110 0001123455779999
Q ss_pred HHHHHHHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecC
Q 000746 769 QKQRVSMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGS 822 (1303)
Q Consensus 769 QkQRiaLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~ 822 (1303)
||||++||||+.. +.+++.. .++|+|+|||+++.+. .||++++|++|++++.|+
T Consensus 432 q~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~ 511 (520)
T TIGR03269 432 ERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGD 511 (520)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 9999999999642 2333332 3789999999999875 599999999999999999
Q ss_pred HHHHHh
Q 000746 823 FEELSK 828 (1303)
Q Consensus 823 ~~~l~~ 828 (1303)
++++.+
T Consensus 512 ~~~~~~ 517 (520)
T TIGR03269 512 PEEIVE 517 (520)
T ss_pred HHHHHh
Confidence 887643
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-23 Score=224.81 Aligned_cols=160 Identities=21% Similarity=0.286 Sum_probs=125.3
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-----------EcCeEEEEc
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-----------IRGTVAYVP 709 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-----------~~~~iayv~ 709 (1303)
++++|+++.|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|.+|.+.. .++.++|++
T Consensus 1 l~i~~l~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (201)
T cd03231 1 LEADELTCERDG-RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLG 79 (201)
T ss_pred CEEEEEEEEeCC-ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEec
Confidence 468999999975 46999999999999999999999999999999999999999875421 234699999
Q ss_pred cCcccc-cccHHHHHccCCC-CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH------
Q 000746 710 QISWIF-NATLRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN------ 781 (1303)
Q Consensus 710 Q~p~l~-~~TireNI~~g~~-~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~------ 781 (1303)
|++.++ +.|++||+.+..+ .++++..++++..++.+..+ ....+||||||||++||||+..
T Consensus 80 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~laral~~~p~lll 148 (201)
T cd03231 80 HAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFED-----------RPVAQLSAGQQRRVALARLLLSGRPLWI 148 (201)
T ss_pred cccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhc-----------CchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999876 6899999987643 34556667777666653321 2346799999999999999542
Q ss_pred -----------------HHHhHhc-CCCEEEEEecCCCc-ccccCEEEEE
Q 000746 782 -----------------SCIKEEL-RGKTRILVTNQLHF-LPHVDRIILV 812 (1303)
Q Consensus 782 -----------------~~i~~~~-~~~TvilvtH~~~~-l~~aD~ii~l 812 (1303)
+.+.+.. +++|+|++||+... ...+|+++++
T Consensus 149 lDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 149 LDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 2333332 47999999998775 4567888776
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-23 Score=262.45 Aligned_cols=171 Identities=22% Similarity=0.330 Sum_probs=130.7
Q ss_pred CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCC--CCceEEE---------cCeEEEEccCccccc-ccHHH
Q 000746 654 SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPL--KDASVVI---------RGTVAYVPQISWIFN-ATLRK 721 (1303)
Q Consensus 654 ~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~--~g~~~~~---------~~~iayv~Q~p~l~~-~Tire 721 (1303)
+++|+|+|+++++||+++|+||||||||||+++|+|..+|. +| .+.+ +++++||+|++.++. .|++|
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG-~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E 159 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTG-TILANNRKPTKQILKRTGFVTQDDILYPHLTVRE 159 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeE-EEEECCEECchhhccceEEECcccccCCcCCHHH
Confidence 36999999999999999999999999999999999999874 55 3433 245999999999984 69999
Q ss_pred HHccCC------CCChhhHHHHHHHHhhHHHhhcCCCCCCccccCC-CCCCchHHHHHHHHHHHHHH-------------
Q 000746 722 NILFGS------EFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGER-GVNISGGQKQRVSMARAVFN------------- 781 (1303)
Q Consensus 722 NI~~g~------~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~-G~~LSGGQkQRiaLARAl~~------------- 781 (1303)
|+.++. ..++++..+.++ .+-+.+ .+++..+|.+|++ ...||||||||++||||++.
T Consensus 160 ~l~~~a~~~~~~~~~~~~~~~~v~--~~l~~l-gL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsg 236 (659)
T PLN03211 160 TLVFCSLLRLPKSLTKQEKILVAE--SVISEL-GLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSG 236 (659)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHH--HHHHHc-CChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCC
Confidence 998753 122222211111 111111 2445568888865 56899999999999999653
Q ss_pred ----------HHHhHhc-CCCEEEEEecCCCc--ccccCEEEEEeCCEEEEecCHHHHHh
Q 000746 782 ----------SCIKEEL-RGKTRILVTNQLHF--LPHVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 782 ----------~~i~~~~-~~~TvilvtH~~~~--l~~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
+.+++.. +|+|+|++||+++. ...+|+|++|++|++++.|+++++.+
T Consensus 237 LD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 237 LDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred cCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 2333332 58999999999984 56799999999999999999998864
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-23 Score=233.31 Aligned_cols=160 Identities=24% Similarity=0.372 Sum_probs=116.3
Q ss_pred CccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-----------EcCeEEEEc-cCcccc-cccHHH
Q 000746 655 PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-----------IRGTVAYVP-QISWIF-NATLRK 721 (1303)
Q Consensus 655 ~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-----------~~~~iayv~-Q~p~l~-~~Tire 721 (1303)
++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.+.. .+..++|++ |++.++ +.|++|
T Consensus 35 ~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e 114 (236)
T cd03267 35 EALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVID 114 (236)
T ss_pred eeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHH
Confidence 6999999999999999999999999999999999999999874321 134699997 566665 679999
Q ss_pred HHccCCC---CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-----------------
Q 000746 722 NILFGSE---FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN----------------- 781 (1303)
Q Consensus 722 NI~~g~~---~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~----------------- 781 (1303)
|+.+... .++++..+.++ .+.+.+ .+++..++ ...+||||||||++||||+..
T Consensus 115 ~l~~~~~~~~~~~~~~~~~~~--~~l~~~-gl~~~~~~----~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~ 187 (236)
T cd03267 115 SFYLLAAIYDLPPARFKKRLD--ELSELL-DLEELLDT----PVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVV 187 (236)
T ss_pred HHHHHHHHcCCCHHHHHHHHH--HHHHHc-CChhHhcC----ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHH
Confidence 9976432 23322222111 111111 12222233 345799999999999999542
Q ss_pred ------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEec
Q 000746 782 ------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEG 821 (1303)
Q Consensus 782 ------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g 821 (1303)
+.+.+.. +++|+|++||+++.+. .||++++|++|++++.|
T Consensus 188 ~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 188 AQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 2344432 3789999999999875 59999999999998764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-23 Score=256.63 Aligned_cols=177 Identities=19% Similarity=0.279 Sum_probs=132.7
Q ss_pred EEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-------------EcCeEEEEc
Q 000746 643 IKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-------------IRGTVAYVP 709 (1303)
Q Consensus 643 ~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-------------~~~~iayv~ 709 (1303)
++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. .+..++|++
T Consensus 1 ~~nl~~~~~~-~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 79 (491)
T PRK10982 1 MSNISKSFPG-VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVH 79 (491)
T ss_pred CCceEEEeCC-EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEe
Confidence 3688999964 46999999999999999999999999999999999999999875421 024599999
Q ss_pred cCcccc-cccHHHHHccCCC-C-----ChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-
Q 000746 710 QISWIF-NATLRKNILFGSE-F-----DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN- 781 (1303)
Q Consensus 710 Q~p~l~-~~TireNI~~g~~-~-----~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~- 781 (1303)
|++.++ +.|++||+.++.. . ++++..+. ..+.++.+ |.+........+||||||||++||||+..
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA~al~~~ 152 (491)
T PRK10982 80 QELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRD-----TKAIFDEL--DIDIDPRAKVATLSVSQMQMIEIAKAFSYN 152 (491)
T ss_pred cccccccCCCHHHHhhcccccccccccCHHHHHHH-----HHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHHhC
Confidence 999876 5699999987631 1 22211111 11222222 22222344567899999999999999642
Q ss_pred ----------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHH
Q 000746 782 ----------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELS 827 (1303)
Q Consensus 782 ----------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~ 827 (1303)
+.+.+.. +++|+|++||+++.+. .||+|++|++|++++.|+.+++.
T Consensus 153 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 222 (491)
T PRK10982 153 AKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLT 222 (491)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCC
Confidence 2233322 5789999999999875 59999999999999999988763
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-23 Score=224.21 Aligned_cols=172 Identities=23% Similarity=0.330 Sum_probs=128.4
Q ss_pred cEEEEeeEEEeCCCC--------CccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcCe-EEEEcc
Q 000746 640 AVSIKNGNFSWDSKS--------PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGT-VAYVPQ 710 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~--------~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~~-iayv~Q 710 (1303)
.++++|++..|+... .+++||||+|++||.++|||+|||||||+.++|+|+++|++|. +...++ +.-..
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~-i~f~g~~i~~~~- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGE-ILFEGKDITKLS- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCce-EEEcCcchhhcc-
Confidence 478899999886431 5799999999999999999999999999999999999999974 444432 11111
Q ss_pred CcccccccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH---------
Q 000746 711 ISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN--------- 781 (1303)
Q Consensus 711 ~p~l~~~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~--------- 781 (1303)
.+-..+++.+.++.+++.++.. ......|||||||||+||||+.-
T Consensus 82 ----------------~~~~~~~v~elL~~Vgl~~~~~----------~ryPhelSGGQrQRi~IARALal~P~liV~DE 135 (268)
T COG4608 82 ----------------KEERRERVLELLEKVGLPEEFL----------YRYPHELSGGQRQRIGIARALALNPKLIVADE 135 (268)
T ss_pred ----------------hhHHHHHHHHHHHHhCCCHHHh----------hcCCcccCchhhhhHHHHHHHhhCCcEEEecC
Confidence 1112356777777777765431 12346799999999999999531
Q ss_pred ----------HHHhHh------cCCCEEEEEecCCCcccc-cCEEEEEeCCEEEEecCHHHHHhcc--hHHHHHHHH
Q 000746 782 ----------SCIKEE------LRGKTRILVTNQLHFLPH-VDRIILVSEGMIKEEGSFEELSKHG--RLFQKLMEN 839 (1303)
Q Consensus 782 ----------~~i~~~------~~~~TvilvtH~~~~l~~-aD~ii~l~~G~i~~~g~~~~l~~~~--~~~~~l~~~ 839 (1303)
..+.+. ..+-|.++|||+++.+++ +|+|.+|..|+|+|.|+.+++..+. .+-+.++..
T Consensus 136 pvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~HpYTk~Ll~a 212 (268)
T COG4608 136 PVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPLHPYTKALLSA 212 (268)
T ss_pred chhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCCCHHHHHHHHh
Confidence 111111 148899999999999876 8999999999999999999998753 344445443
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-23 Score=259.49 Aligned_cols=178 Identities=19% Similarity=0.312 Sum_probs=134.1
Q ss_pred CcEEEEeeEEEeCC----------CCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE-------
Q 000746 639 PAVSIKNGNFSWDS----------KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI------- 701 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~----------~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~------- 701 (1303)
+.++++|+++.|+. +.++|+|+||+|++|++++|+||||||||||+++|+|+++ .+|. +.+
T Consensus 274 ~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~-i~~~g~~i~~ 351 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGE-IWFDGQPLHN 351 (529)
T ss_pred CcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcE-EEECCEEccc
Confidence 45899999999952 2469999999999999999999999999999999999985 6764 332
Q ss_pred ---------cCeEEEEccCc--ccc-cccHHHHHccCCC-----CCh----hhHHHHHHHHhhHHHhhcCCCCCCccccC
Q 000746 702 ---------RGTVAYVPQIS--WIF-NATLRKNILFGSE-----FDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGE 760 (1303)
Q Consensus 702 ---------~~~iayv~Q~p--~l~-~~TireNI~~g~~-----~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige 760 (1303)
+..++|++|++ .++ +.|++||+.++.. .+. ++..+.++..++.+ .....
T Consensus 352 ~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~ 421 (529)
T PRK15134 352 LNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDP----------ETRHR 421 (529)
T ss_pred cchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCH----------HHHhc
Confidence 23599999998 355 4699999987521 121 12223333333321 11234
Q ss_pred CCCCCchHHHHHHHHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeC
Q 000746 761 RGVNISGGQKQRVSMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSE 814 (1303)
Q Consensus 761 ~G~~LSGGQkQRiaLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~ 814 (1303)
...+||||||||++||||+.. +.+++.. .++|+|+|||+++.+. .||+|++|++
T Consensus 422 ~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~ 501 (529)
T PRK15134 422 YPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQ 501 (529)
T ss_pred CCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEEC
Confidence 456899999999999999542 2344332 3789999999999875 5999999999
Q ss_pred CEEEEecCHHHHHh
Q 000746 815 GMIKEEGSFEELSK 828 (1303)
Q Consensus 815 G~i~~~g~~~~l~~ 828 (1303)
|++++.|+++++.+
T Consensus 502 G~i~~~~~~~~~~~ 515 (529)
T PRK15134 502 GEVVEQGDCERVFA 515 (529)
T ss_pred CEEEEEcCHHHHhc
Confidence 99999999998864
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-23 Score=221.35 Aligned_cols=153 Identities=29% Similarity=0.522 Sum_probs=111.3
Q ss_pred EEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcCe-EEEEccCcccccccHH
Q 000746 642 SIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGT-VAYVPQISWIFNATLR 720 (1303)
Q Consensus 642 ~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~~-iayv~Q~p~l~~~Tir 720 (1303)
+++|+++.|++ .++|+|+||++++||+++|+||||||||||+++|.|+++|++|. +.+++. +. + .-...++
T Consensus 1 ~~~~l~~~~~~-~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~-v~~~g~~~~---~---~~~~~~~ 72 (180)
T cd03214 1 EVENLSVGYGG-RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGE-ILLDGKDLA---S---LSPKELA 72 (180)
T ss_pred CeeEEEEEECC-eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcE-EEECCEECC---c---CCHHHHH
Confidence 46899999975 46999999999999999999999999999999999999998874 444432 10 0 0000112
Q ss_pred HHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-------------------
Q 000746 721 KNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN------------------- 781 (1303)
Q Consensus 721 eNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~------------------- 781 (1303)
..|.+- .++++.+++.+.+. ....+||||||||++||||+..
T Consensus 73 ~~i~~~--------~q~l~~~gl~~~~~-----------~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~ 133 (180)
T cd03214 73 RKIAYV--------PQALELLGLAHLAD-----------RPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQ 133 (180)
T ss_pred HHHhHH--------HHHHHHcCCHhHhc-----------CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence 222111 11555566654332 3457899999999999999542
Q ss_pred ----HHHhHhcC--CCEEEEEecCCCcc-cccCEEEEEeCCEEEEec
Q 000746 782 ----SCIKEELR--GKTRILVTNQLHFL-PHVDRIILVSEGMIKEEG 821 (1303)
Q Consensus 782 ----~~i~~~~~--~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g 821 (1303)
+.+.+..+ ++|+|++||+++.+ ..||++++|++|++++.|
T Consensus 134 ~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 134 IELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 23444333 78999999999997 569999999999998654
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-23 Score=229.43 Aligned_cols=168 Identities=25% Similarity=0.343 Sum_probs=122.2
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcCeEEEEcc-Ccccc-ccc
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQ-ISWIF-NAT 718 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~~iayv~Q-~p~l~-~~T 718 (1303)
+.++|.+..|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++| .+.+.+.-.+..+ ...++ +.|
T Consensus 23 l~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G-~i~~~g~~~~~~~~~~~~~~~~t 100 (224)
T cd03220 23 LGILGRKGEVGE-FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSG-TVTVRGRVSSLLGLGGGFNPELT 100 (224)
T ss_pred hhhhhhhhhcCC-eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEEchhhcccccCCCCCc
Confidence 567788888865 4699999999999999999999999999999999999999887 5666665433333 33333 679
Q ss_pred HHHHHccCCC---CChhh----HHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH----------
Q 000746 719 LRKNILFGSE---FDPAK----YWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN---------- 781 (1303)
Q Consensus 719 ireNI~~g~~---~~~~~----~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~---------- 781 (1303)
++||+.++.. .+.+. ..++++..++ ++..+ ....+||||||||++||||++.
T Consensus 101 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~----~~~~~LSgG~~qrv~laral~~~p~llllDEP 169 (224)
T cd03220 101 GRENIYLNGRLLGLSRKEIDEKIDEIIEFSEL-------GDFID----LPVKTYSSGMKARLAFAIATALEPDILLIDEV 169 (224)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------hhhhh----CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 9999987532 12222 2222222222 22222 3345799999999999999542
Q ss_pred -------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEec
Q 000746 782 -------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEG 821 (1303)
Q Consensus 782 -------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g 821 (1303)
+.+.+.. +++|+|++||+++.+. .+|++++|++|++++.|
T Consensus 170 ~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 170 LAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred cccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 2333332 4689999999999875 59999999999998765
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-23 Score=202.72 Aligned_cols=176 Identities=27% Similarity=0.409 Sum_probs=134.6
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------------E
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------------I 701 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------------~ 701 (1303)
.|+++|++|.|+.. .+|.||+|+.+.||.+++.||||+|||||++.|-=+-.|.+|.... +
T Consensus 2 sirv~~in~~yg~~-q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~l 80 (242)
T COG4161 2 SIQLNGINCFYGAH-QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDL 80 (242)
T ss_pred ceEEcccccccccc-hheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHH
Confidence 48899999999754 6899999999999999999999999999999987666677764321 4
Q ss_pred cCeEEEEccCcccc-cccHHHHHccCC----CCChh----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHH
Q 000746 702 RGTVAYVPQISWIF-NATLRKNILFGS----EFDPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQR 772 (1303)
Q Consensus 702 ~~~iayv~Q~p~l~-~~TireNI~~g~----~~~~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQR 772 (1303)
|..+|.|.|+-.|. ..||-||+.=.- ...++ +-.+.++.-.|.+.-+.+| ..|||||+||
T Consensus 81 r~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~p-----------lhlsggqqqr 149 (242)
T COG4161 81 RRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYP-----------LHLSGGQQQR 149 (242)
T ss_pred HHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCc-----------eecccchhhh
Confidence 56799999999887 679999997321 12222 2233344444444444443 5699999999
Q ss_pred HHHHHHHHH-----------------------HHHhHhc-CCCEEEEEecCCCcccc-cCEEEEEeCCEEEEecCHHHHH
Q 000746 773 VSMARAVFN-----------------------SCIKEEL-RGKTRILVTNQLHFLPH-VDRIILVSEGMIKEEGSFEELS 827 (1303)
Q Consensus 773 iaLARAl~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~~-aD~ii~l~~G~i~~~g~~~~l~ 827 (1303)
+|||||++. +.|++.. .|.|-++|||.++..+. |.+++.|++|+|+|+|+++-..
T Consensus 150 vaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~ft 229 (242)
T COG4161 150 VAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFT 229 (242)
T ss_pred HHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhhcc
Confidence 999999642 2334433 48899999999999764 8999999999999999987654
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.1e-23 Score=222.74 Aligned_cols=160 Identities=20% Similarity=0.247 Sum_probs=125.2
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE----------cCeEEEEcc
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI----------RGTVAYVPQ 710 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~----------~~~iayv~Q 710 (1303)
++++|+++.|++ ..+++|+||+|++||+++|+|+||||||||+++|+|+++|++|.+ .+ +..++|++|
T Consensus 3 l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~~~~~~~~ 80 (207)
T PRK13539 3 LEGEDLACVRGG-RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTI-KLDGGDIDDPDVAEACHYLGH 80 (207)
T ss_pred EEEEeEEEEECC-eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEeCcchhhHhhcEEecC
Confidence 789999999975 469999999999999999999999999999999999999998743 32 335899998
Q ss_pred Ccccc-cccHHHHHccCCC---CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-----
Q 000746 711 ISWIF-NATLRKNILFGSE---FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN----- 781 (1303)
Q Consensus 711 ~p~l~-~~TireNI~~g~~---~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~----- 781 (1303)
++.++ +.|++||+.+... .++++..+.++..++.+..+ ....+||||||||++||||+..
T Consensus 81 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~la~al~~~p~ll 149 (207)
T PRK13539 81 RNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAH-----------LPFGYLSAGQKRRVALARLLVSNRPIW 149 (207)
T ss_pred CCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHc-----------CChhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 87765 6899999986432 23444566666666654321 1234799999999999999542
Q ss_pred ------------------HHHhHh-cCCCEEEEEecCCCcccccCEEEEEeC
Q 000746 782 ------------------SCIKEE-LRGKTRILVTNQLHFLPHVDRIILVSE 814 (1303)
Q Consensus 782 ------------------~~i~~~-~~~~TvilvtH~~~~l~~aD~ii~l~~ 814 (1303)
+.+.+. .+++|+|++||+++.++. |+++.++.
T Consensus 150 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 150 ILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 233332 258999999999999988 99988854
|
|
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.89 E-value=5e-23 Score=228.84 Aligned_cols=168 Identities=22% Similarity=0.343 Sum_probs=125.7
Q ss_pred EEeCCCCCccceeeeEec-----CCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcC-eEEEEccCccc-ccccHH
Q 000746 648 FSWDSKSPTLSNINLDIP-----VGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRG-TVAYVPQISWI-FNATLR 720 (1303)
Q Consensus 648 f~~~~~~~~L~~i~l~i~-----~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~-~iayv~Q~p~l-~~~Tir 720 (1303)
|+|++....++|++|+++ +||+++|+||||||||||+++|+|+++|.+|. +.+.+ .|+|++|++.. ++.|++
T Consensus 1 ~~y~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~-i~~~g~~i~~~~q~~~~~~~~tv~ 79 (246)
T cd03237 1 YTYPTMKKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGD-IEIELDTVSYKPQYIKADYEGTVR 79 (246)
T ss_pred CCCcccccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCe-EEECCceEEEecccccCCCCCCHH
Confidence 567765568888888886 79999999999999999999999999999974 55665 89999999874 689999
Q ss_pred HHHccCCC-C-C-hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH----------------
Q 000746 721 KNILFGSE-F-D-PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN---------------- 781 (1303)
Q Consensus 721 eNI~~g~~-~-~-~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~---------------- 781 (1303)
||+.+... . + +++..++++.+++.+. ......+||||||||++||||+..
T Consensus 80 e~l~~~~~~~~~~~~~~~~~l~~l~l~~~-----------~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~ 148 (246)
T cd03237 80 DLLSSITKDFYTHPYFKTEIAKPLQIEQI-----------LDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDV 148 (246)
T ss_pred HHHHHHhhhccccHHHHHHHHHHcCCHHH-----------hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 99975432 1 1 2233445554444322 234456799999999999999642
Q ss_pred -------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEE--EecCHHHHH
Q 000746 782 -------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIK--EEGSFEELS 827 (1303)
Q Consensus 782 -------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~--~~g~~~~l~ 827 (1303)
+.+++.. .++|+|+|||+++.+. .||+|++|+++..+ ..+++.++.
T Consensus 149 ~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 206 (246)
T cd03237 149 EQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLR 206 (246)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHH
Confidence 2344433 3799999999999877 59999999765433 456666654
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.2e-23 Score=228.75 Aligned_cols=162 Identities=22% Similarity=0.323 Sum_probs=119.3
Q ss_pred EEEEeeEEEeCC------CCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE-------------
Q 000746 641 VSIKNGNFSWDS------KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI------------- 701 (1303)
Q Consensus 641 i~~~~~~f~~~~------~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~------------- 701 (1303)
++++|++++|+. +.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.+..-
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 688999999963 1368999999999999999999999999999999999999988743221
Q ss_pred -------cCeEEEEccCccccc-ccHHHHHccCC---CCChh----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCc
Q 000746 702 -------RGTVAYVPQISWIFN-ATLRKNILFGS---EFDPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNIS 766 (1303)
Q Consensus 702 -------~~~iayv~Q~p~l~~-~TireNI~~g~---~~~~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LS 766 (1303)
+..++|++|+|.++. .|++|||.+.. ..+.+ +..++++..++. +.. ....+.+||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~---~~~~~~~LS 151 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIP-------ERL---WHLPPATFS 151 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-------hhh---hhCCcccCC
Confidence 135899999998874 59999997631 12222 222222222221 111 123467899
Q ss_pred hHHHHHHHHHHHHHH-----------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEE
Q 000746 767 GGQKQRVSMARAVFN-----------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILV 812 (1303)
Q Consensus 767 GGQkQRiaLARAl~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l 812 (1303)
||||||++||||++. +.+++.. +++|+|++||+++.+. .||+++.+
T Consensus 152 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 152 GGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 999999999999642 2333332 4789999999999875 69999876
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=8e-23 Score=254.04 Aligned_cols=177 Identities=25% Similarity=0.354 Sum_probs=137.2
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc--CeEEEEccCcc--c
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR--GTVAYVPQISW--I 714 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~--~~iayv~Q~p~--l 714 (1303)
..++++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++| .+.+. ..++|++|++. +
T Consensus 318 ~~l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G-~i~~~~~~~i~~~~q~~~~~~ 395 (530)
T PRK15064 318 NALEVENLTKGFDN-GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSG-TVKWSENANIGYYAQDHAYDF 395 (530)
T ss_pred ceEEEEeeEEeeCC-ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe-EEEECCceEEEEEcccccccC
Confidence 46999999999975 4699999999999999999999999999999999999999987 45454 47999999974 4
Q ss_pred c-cccHHHHHccCC--CCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH----------
Q 000746 715 F-NATLRKNILFGS--EFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN---------- 781 (1303)
Q Consensus 715 ~-~~TireNI~~g~--~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~---------- 781 (1303)
+ +.|++||+.+.. ..++++..+.++..++..+ .......+||||||||++||||+..
T Consensus 396 ~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEP 465 (530)
T PRK15064 396 ENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQD----------DIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEP 465 (530)
T ss_pred CCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChh----------HhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 4 469999997532 1233444555555544211 1234457899999999999999642
Q ss_pred -------------HHHhHhcCCCEEEEEecCCCccc-ccCEEEEEeCCEEE-EecCHHHHHhc
Q 000746 782 -------------SCIKEELRGKTRILVTNQLHFLP-HVDRIILVSEGMIK-EEGSFEELSKH 829 (1303)
Q Consensus 782 -------------~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~-~~g~~~~l~~~ 829 (1303)
+.+++. +.|+|+|||+++.+. .||++++|++|+++ ..|+++++.+.
T Consensus 466 t~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 466 TNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred CCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 223332 469999999999875 59999999999998 78988877543
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.6e-23 Score=225.00 Aligned_cols=182 Identities=21% Similarity=0.330 Sum_probs=138.9
Q ss_pred CCcEEEEeeEEEeCCCC----------CccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-------
Q 000746 638 LPAVSIKNGNFSWDSKS----------PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------- 700 (1303)
Q Consensus 638 ~~~i~~~~~~f~~~~~~----------~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------- 700 (1303)
...++.+|+...|+-+. .+.+++||++++||.++|||.||||||||-.+|++++++. |.+..
T Consensus 274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~ 352 (534)
T COG4172 274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDG 352 (534)
T ss_pred CceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccc
Confidence 45688999998886432 4789999999999999999999999999999999999875 54321
Q ss_pred --------EcCeEEEEccCccc---ccccHHHHHccCCC-----C-C---hhhHHHHHHHHhhHHHhhcCCCCCCccccC
Q 000746 701 --------IRGTVAYVPQISWI---FNATLRKNILFGSE-----F-D---PAKYWKTVDVSALQHDLDLLPDRDLTEIGE 760 (1303)
Q Consensus 701 --------~~~~iayv~Q~p~l---~~~TireNI~~g~~-----~-~---~~~~~~vl~~~~l~~~i~~lp~g~~T~ige 760 (1303)
+|+++-.|+|||+= ...||-+-|.=|-. . + +++..++++.++|+.... ..
T Consensus 353 ~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r----------~R 422 (534)
T COG4172 353 LSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATR----------NR 422 (534)
T ss_pred cChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHh----------hc
Confidence 45679999999972 25688888865521 1 2 334555666666665431 22
Q ss_pred CCCCCchHHHHHHHHHHHHH---------------HH--------HHhHh--cCCCEEEEEecCCCcccc-cCEEEEEeC
Q 000746 761 RGVNISGGQKQRVSMARAVF---------------NS--------CIKEE--LRGKTRILVTNQLHFLPH-VDRIILVSE 814 (1303)
Q Consensus 761 ~G~~LSGGQkQRiaLARAl~---------------~~--------~i~~~--~~~~TvilvtH~~~~l~~-aD~ii~l~~ 814 (1303)
-...+|||||||||||||++ |. .+++. ..+-+-++|||++..++. ||+|+||.+
T Consensus 423 YPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~ 502 (534)
T COG4172 423 YPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRD 502 (534)
T ss_pred CCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeC
Confidence 34679999999999999953 11 11221 147799999999999875 999999999
Q ss_pred CEEEEecCHHHHHhcc
Q 000746 815 GMIKEEGSFEELSKHG 830 (1303)
Q Consensus 815 G~i~~~g~~~~l~~~~ 830 (1303)
|+|+|+|+.+++.+++
T Consensus 503 GkiVE~G~~~~if~~P 518 (534)
T COG4172 503 GKIVEQGPTEAVFANP 518 (534)
T ss_pred CEEeeeCCHHHHhcCC
Confidence 9999999999998764
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.4e-23 Score=222.70 Aligned_cols=160 Identities=24% Similarity=0.277 Sum_probs=124.5
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-----------EcCeEEEEc
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-----------IRGTVAYVP 709 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-----------~~~~iayv~ 709 (1303)
++++|++++|+. .++++|+||+|++||+++|+|+||||||||+++|+|+++|++|.+.. .+++++|++
T Consensus 2 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~ 80 (204)
T PRK13538 2 LEARNLACERDE-RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLG 80 (204)
T ss_pred eEEEEEEEEECC-EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeC
Confidence 688999999975 46999999999999999999999999999999999999999874321 134699999
Q ss_pred cCccccc-ccHHHHHccCCC----CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH---
Q 000746 710 QISWIFN-ATLRKNILFGSE----FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN--- 781 (1303)
Q Consensus 710 Q~p~l~~-~TireNI~~g~~----~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~--- 781 (1303)
|++.++. .|++||+.++.+ .+++++.++++..++.+..+ ....+||||||||++||||++.
T Consensus 81 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~qrl~la~al~~~p~ 149 (204)
T PRK13538 81 HQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFED-----------VPVRQLSAGQQRRVALARLWLTRAP 149 (204)
T ss_pred CccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhh-----------CChhhcCHHHHHHHHHHHHHhcCCC
Confidence 9998875 699999987643 23445666676666654322 2346799999999999999642
Q ss_pred --------------------HHHhHh-cCCCEEEEEecCCCcccc-cCEEEEE
Q 000746 782 --------------------SCIKEE-LRGKTRILVTNQLHFLPH-VDRIILV 812 (1303)
Q Consensus 782 --------------------~~i~~~-~~~~TvilvtH~~~~l~~-aD~ii~l 812 (1303)
+.+.+. .+++|+|++||+++.+.. .++++++
T Consensus 150 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 150 LWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 233333 247899999999999865 4566665
|
|
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4e-19 Score=201.12 Aligned_cols=417 Identities=18% Similarity=0.249 Sum_probs=244.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCcccccCCChHHH---HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 000746 392 WRVGFRLRSTLVAAIFRKTLRLTHEARKGFPSGKV---TNMITTDANALQQISQQLHGLWSAP-FRITLSMVLLYQQLGV 467 (1303)
Q Consensus 392 ~~~~~~lr~~L~~~i~~k~l~l~~~~~~~~~~g~i---~nl~s~Dv~~i~~~~~~~~~~~~~~-~~i~~~~~~l~~~lg~ 467 (1303)
...+..+|..|....|++-+.-..-..-....|.+ =|.++.|+..+.+....+..=..-| +.++++.+.|-...+-
T Consensus 182 ~klaLafrtrL~~h~y~~Y~snqTyY~Vsn~d~~i~n~D~sLTeDI~~Fs~svahLysnLtKP~lDl~l~s~~L~~s~~s 261 (728)
T KOG0064|consen 182 SKLALAFRTRLTRHAYDMYLSNQTFYKVSNLDSVIENADNSLTEDIAKFSDSVAHLYSNLTKPVLDLILISFTLLDSATS 261 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCceEEEecccchhcCccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhcc
Confidence 36777889999999999877643211111111222 2568889887776544433222333 3444444433332221
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHH--
Q 000746 468 ASLLGSLMLVLMVPLQTFI----ISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSW-- 541 (1303)
Q Consensus 468 ~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~-- 541 (1303)
....+..+..+.+.+...+ ..+..++..+...........=+.++.+-..|-.||..+...+++++.-+.-...
T Consensus 262 ~g~~~~~~~~lvv~lTa~iLr~~sP~Fg~Lv~eeA~r~g~lr~~Hs~ii~NsEEIAfy~GhkvE~~ql~~sy~~L~~qm~ 341 (728)
T KOG0064|consen 262 VGAAGITLAGLVVYLTAFILRAVSPKFGKLVAEEAARKGYLRYLHSNIITNSEEIAFYGGHKVELTQVDESYNRLVEQMN 341 (728)
T ss_pred ccccchhhhhhHHHHHHHHHHHhCCchhhHHHHHHhhccHHHHHHHHHhccHHHHHhhcccHHHHHHHHHHHHHHHHHHH
Confidence 1111111111111122222 2333344333333333334455678999999999999988888777665543322
Q ss_pred --HHHHHHHHHHHHHH----HHHHhHHh---HHhhhhhhhhhCCCC-------CHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 000746 542 --FRKAQFLSAFNSFI----LNSIPVVV---TVVSFGTFTLLGGDL-------TPARAFTS-LSLFAVLRFPLNMLPNLL 604 (1303)
Q Consensus 542 --~~~~~~~~~~~~~~----~~~~~~~~---~~~~f~~~~~~~~~l-------~~~~~f~~-l~l~~~l~~pl~~l~~~~ 604 (1303)
.++..++...-.++ |.....+. +++ ++... .++++ +-...|++ =-+.......+..+...+
T Consensus 342 li~k~r~~YiMleqF~mKYvWsg~GlvmvsiPI~-~~t~~-s~~~~~~~e~~~srt~~f~t~r~LL~saAdAieRlMssy 419 (728)
T KOG0064|consen 342 LIFKVRLWYIMLEQFVMKYTWSGTGLVMVSIPIL-TSTLA-SEGTLQLSEEGNSRTKEFITNRRLLLSAADAIERLMSSY 419 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCceEEEEeeee-ecccC-CCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222222 21111110 111 11110 01111 11122322 223333334555666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcC--------CC-------------CCCC-----CCCCcEEEEeeEEEeCCCCCccc
Q 000746 605 SQVVNANVSLQRLEELLLAEERILM--------PN-------------PPLE-----PELPAVSIKNGNFSWDSKSPTLS 658 (1303)
Q Consensus 605 ~~~~~a~~s~~Ri~~~l~~~~~~~~--------~~-------------~~~~-----~~~~~i~~~~~~f~~~~~~~~L~ 658 (1303)
..+.+-..--.|+.+.++.-++... +. .+.+ .....|.++|+-.--|....+..
T Consensus 420 KeItqLaGyt~Rv~~mf~v~~dv~~g~~~k~~v~e~~~~~~~~e~r~s~~l~~~~~i~~~~gI~lenIpvItP~~~vvv~ 499 (728)
T KOG0064|consen 420 KEITQLAGYTNRVFTMFSVLHDVHKGNYNKTAVPEILSSRTIDESRNSNPLPTTDAIRNFNGIILENIPVITPAGDVLVP 499 (728)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhcccccccccCchhhccCccccccCCcCCccchhhcccceEEecCceeccCcceeec
Confidence 7777777777788766543221100 00 0000 01234888888887777667889
Q ss_pred eeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-EcCeEEEEccCcccccccHHHHHccCC--------CC
Q 000746 659 NINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-IRGTVAYVPQISWIFNATLRKNILFGS--------EF 729 (1303)
Q Consensus 659 ~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-~~~~iayv~Q~p~l~~~TireNI~~g~--------~~ 729 (1303)
++||+|++|....|+||||||||+|.+.|.|+.|...|.-.. .+.+|-|+||.|+.--||+||-|.+.. .+
T Consensus 500 ~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~~kg~ 579 (728)
T KOG0064|consen 500 KLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKRKGY 579 (728)
T ss_pred ceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccCcCcccceeecCCcHHHHHhcCC
Confidence 999999999999999999999999999999999887763222 245799999999999999999999763 36
Q ss_pred ChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHH--------HHHHHH-----------hHhc--
Q 000746 730 DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARA--------VFNSCI-----------KEEL-- 788 (1303)
Q Consensus 730 ~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARA--------l~~~~i-----------~~~~-- 788 (1303)
.|.+..+.++...|+.-++. ..|.+. +.+--.-||||+|||+++||. ++|+|- .+..
T Consensus 580 ~d~dL~~iL~~v~L~~i~qr-~~g~da-~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~ 657 (728)
T KOG0064|consen 580 TDQDLEAILDIVHLEHILQR-EGGWDA-VRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD 657 (728)
T ss_pred CHHHHHHHHHHhhHHHHHHh-ccChhh-hccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh
Confidence 77888999999999866554 344433 444455799999999999998 455552 1222
Q ss_pred CCCEEEEEecCCCcccccCEEEEE
Q 000746 789 RGKTRILVTNQLHFLPHVDRIILV 812 (1303)
Q Consensus 789 ~~~TvilvtH~~~~l~~aD~ii~l 812 (1303)
.|-+.+-||||++.-++-.+.+..
T Consensus 658 ~gi~llsithrpslwk~h~~ll~~ 681 (728)
T KOG0064|consen 658 AGISLLSITHRPSLWKYHTHLLEF 681 (728)
T ss_pred cCceEEEeecCccHHHHHHHHHhc
Confidence 378999999999988776666655
|
|
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.7e-23 Score=219.97 Aligned_cols=156 Identities=17% Similarity=0.281 Sum_probs=120.9
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcC---------eEEEEccC
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRG---------TVAYVPQI 711 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~---------~iayv~Q~ 711 (1303)
++++|++++|++ +.++ ++||+|++||+++|+|+||||||||+++|+|+.+|++|. +.+++ .++|++|+
T Consensus 2 l~~~~l~~~~~~-~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~i~~~~~~~~~~~~~~ 78 (195)
T PRK13541 2 LSLHQLQFNIEQ-KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGN-IYYKNCNINNIAKPYCTYIGHN 78 (195)
T ss_pred eEEEEeeEEECC-cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcE-EEECCcccChhhhhhEEeccCC
Confidence 679999999964 3444 599999999999999999999999999999999999975 44332 48999998
Q ss_pred ccc-ccccHHHHHccCCCC--ChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-------
Q 000746 712 SWI-FNATLRKNILFGSEF--DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN------- 781 (1303)
Q Consensus 712 p~l-~~~TireNI~~g~~~--~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~------- 781 (1303)
+.+ ++.|++|||.++... ++++..++++.+++.+. ....+.+||||||||++||||++.
T Consensus 79 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~~rl~la~al~~~p~~lll 147 (195)
T PRK13541 79 LGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDL-----------LDEKCYSLSSGMQKIVAIARLIACQSDLWLL 147 (195)
T ss_pred cCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhh-----------hccChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 765 678999999875432 23445555555555432 234567899999999999999542
Q ss_pred ----------------HHHhH-hcCCCEEEEEecCCCcccccCEEE
Q 000746 782 ----------------SCIKE-ELRGKTRILVTNQLHFLPHVDRII 810 (1303)
Q Consensus 782 ----------------~~i~~-~~~~~TvilvtH~~~~l~~aD~ii 810 (1303)
+.++. ..+++|+|++||+++.++.||.+.
T Consensus 148 DEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~ 193 (195)
T PRK13541 148 DEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQILQ 193 (195)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhheec
Confidence 23332 235799999999999999998763
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-23 Score=205.52 Aligned_cols=180 Identities=23% Similarity=0.399 Sum_probs=138.7
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------------
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------------ 700 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------------ 700 (1303)
+.++++|+..+|... .+|++|||+.++|+.+.|+|.|||||||+|++|-=+-.|..|.+..
T Consensus 5 ~~l~v~dlHK~~G~~-eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~a 83 (256)
T COG4598 5 NALEVEDLHKRYGEH-EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPA 83 (256)
T ss_pred cceehhHHHhhcccc-hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeC
Confidence 468889999999754 5999999999999999999999999999999999888888874321
Q ss_pred -------EcCeEEEEccCcccc-cccHHHHHcc------CCCCCh--hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCC
Q 000746 701 -------IRGTVAYVPQISWIF-NATLRKNILF------GSEFDP--AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVN 764 (1303)
Q Consensus 701 -------~~~~iayv~Q~p~l~-~~TireNI~~------g~~~~~--~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~ 764 (1303)
+|.+.+.|+|+-.|. ..|+.||+.= |.+-++ ++-...+...++.+.-+ .-...
T Consensus 84 d~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~-----------~YP~~ 152 (256)
T COG4598 84 DKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKAD-----------AYPAH 152 (256)
T ss_pred CHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhh-----------cCccc
Confidence 234689999998887 5799999973 222111 22333344444443322 23467
Q ss_pred CchHHHHHHHHHHHH--------HH------------H---HHhHhc-CCCEEEEEecCCCcccc-cCEEEEEeCCEEEE
Q 000746 765 ISGGQKQRVSMARAV--------FN------------S---CIKEEL-RGKTRILVTNQLHFLPH-VDRIILVSEGMIKE 819 (1303)
Q Consensus 765 LSGGQkQRiaLARAl--------~~------------~---~i~~~~-~~~TvilvtH~~~~l~~-aD~ii~l~~G~i~~ 819 (1303)
|||||+||+|||||+ || + .+.+.. .|+|.++|||.+.+.+. +.+++.+.+|.|-|
T Consensus 153 LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE 232 (256)
T COG4598 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEE 232 (256)
T ss_pred cCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecc
Confidence 999999999999994 22 1 223322 69999999999999876 78999999999999
Q ss_pred ecCHHHHHhcc
Q 000746 820 EGSFEELSKHG 830 (1303)
Q Consensus 820 ~g~~~~l~~~~ 830 (1303)
+|+|+++..++
T Consensus 233 ~G~P~qvf~nP 243 (256)
T COG4598 233 EGPPEQVFGNP 243 (256)
T ss_pred cCChHHHhcCC
Confidence 99999998654
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.3e-23 Score=213.00 Aligned_cols=123 Identities=24% Similarity=0.438 Sum_probs=100.7
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcCe--------------EE
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGT--------------VA 706 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~~--------------ia 706 (1303)
++++|++++|++ .++++|+||++++||+++|+||||||||||+++|+|+++|.+|. +.+.+. ++
T Consensus 1 l~~~~l~~~~~~-~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~-v~~~g~~~~~~~~~~~~~~~i~ 78 (163)
T cd03216 1 LELRGITKRFGG-VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGE-ILVDGKEVSFASPRDARRAGIA 78 (163)
T ss_pred CEEEEEEEEECC-eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeE-EEECCEECCcCCHHHHHhcCeE
Confidence 468999999975 47999999999999999999999999999999999999998874 444331 22
Q ss_pred EEccCcccccccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-----
Q 000746 707 YVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN----- 781 (1303)
Q Consensus 707 yv~Q~p~l~~~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~----- 781 (1303)
|++| ||||||||++||||++.
T Consensus 79 ~~~q------------------------------------------------------LS~G~~qrl~laral~~~p~il 104 (163)
T cd03216 79 MVYQ------------------------------------------------------LSVGERQMVEIARALARNARLL 104 (163)
T ss_pred EEEe------------------------------------------------------cCHHHHHHHHHHHHHhcCCCEE
Confidence 2222 99999999999999642
Q ss_pred ------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEE
Q 000746 782 ------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKE 819 (1303)
Q Consensus 782 ------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~ 819 (1303)
+.+++.. +++|+|++||+++.+. .||++++|++|++++
T Consensus 105 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 105 ILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 2343332 4789999999999765 599999999999875
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.4e-23 Score=252.43 Aligned_cols=180 Identities=22% Similarity=0.328 Sum_probs=132.9
Q ss_pred CcEEEEeeEEEeCC--CCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCC-CCCCceEEEc-------------
Q 000746 639 PAVSIKNGNFSWDS--KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELP-PLKDASVVIR------------- 702 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~--~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~-~~~g~~~~~~------------- 702 (1303)
..++++|+++.|+. +.++++|+||+|++||+++|+||||||||||+++|+|+++ |++|.+ .+.
T Consensus 258 ~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i-~~~g~~~~~~~~~~~~ 336 (506)
T PRK13549 258 VILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEI-FIDGKPVKIRNPQQAI 336 (506)
T ss_pred ceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEE-EECCEECCCCCHHHHH
Confidence 35899999999952 3469999999999999999999999999999999999998 477743 322
Q ss_pred -CeEEEEccCc---ccc-cccHHHHHccCC--CC------ChhhHHHHHHHHhhHHHhhcCCCCCCc-cccCCCCCCchH
Q 000746 703 -GTVAYVPQIS---WIF-NATLRKNILFGS--EF------DPAKYWKTVDVSALQHDLDLLPDRDLT-EIGERGVNISGG 768 (1303)
Q Consensus 703 -~~iayv~Q~p---~l~-~~TireNI~~g~--~~------~~~~~~~vl~~~~l~~~i~~lp~g~~T-~ige~G~~LSGG 768 (1303)
..++|++|+| .++ +.|+.||+.++. .+ +.++.. ....+.++.+. ... .......+||||
T Consensus 337 ~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~--l~~~~~~~~~~~LSgG 409 (506)
T PRK13549 337 AQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAEL-----KTILESIQRLK--VKTASPELAIARLSGG 409 (506)
T ss_pred HCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHH-----HHHHHHHHhcC--ccCCCcccccccCCHH
Confidence 3499999996 355 569999998752 11 111110 11222233331 111 123445689999
Q ss_pred HHHHHHHHHHHHH-----------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCH
Q 000746 769 QKQRVSMARAVFN-----------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSF 823 (1303)
Q Consensus 769 QkQRiaLARAl~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~ 823 (1303)
||||++||||+.. +.+.+.. +++|+|++||+++.+. .||++++|++|+++..|+.
T Consensus 410 ~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~ 489 (506)
T PRK13549 410 NQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLIN 489 (506)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEecc
Confidence 9999999999542 2333322 5899999999999865 5999999999999999988
Q ss_pred HHH
Q 000746 824 EEL 826 (1303)
Q Consensus 824 ~~l 826 (1303)
+++
T Consensus 490 ~~~ 492 (506)
T PRK13549 490 HNL 492 (506)
T ss_pred ccC
Confidence 775
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-22 Score=219.71 Aligned_cols=157 Identities=18% Similarity=0.243 Sum_probs=118.3
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-----------EcCeEEEEc
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-----------IRGTVAYVP 709 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-----------~~~~iayv~ 709 (1303)
++++|+++.|++ .++++|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..++|++
T Consensus 1 l~~~~l~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (198)
T TIGR01189 1 LAARNLACSRGE-RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLG 79 (198)
T ss_pred CEEEEEEEEECC-EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEec
Confidence 468999999975 46999999999999999999999999999999999999999874321 124689999
Q ss_pred cCccccc-ccHHHHHccCCCC---ChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH----
Q 000746 710 QISWIFN-ATLRKNILFGSEF---DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN---- 781 (1303)
Q Consensus 710 Q~p~l~~-~TireNI~~g~~~---~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~---- 781 (1303)
|++.++. .|++||+.+..+. ++++..++++..++.+.. .....+||||||||++||||++.
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la~al~~~p~l 148 (198)
T TIGR01189 80 HLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFE-----------DLPAAQLSAGQQRRLALARLWLSRAPL 148 (198)
T ss_pred cCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHh-----------cCChhhcCHHHHHHHHHHHHHhcCCCE
Confidence 9998875 7999999865322 123455556655555432 12345799999999999999542
Q ss_pred -------------------HHHhHh-cCCCEEEEEecCCCcccccCEEE
Q 000746 782 -------------------SCIKEE-LRGKTRILVTNQLHFLPHVDRII 810 (1303)
Q Consensus 782 -------------------~~i~~~-~~~~TvilvtH~~~~l~~aD~ii 810 (1303)
+.+.+. .+++|+|++||+...+.. |+++
T Consensus 149 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~-~~~~ 196 (198)
T TIGR01189 149 WILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLVE-AREL 196 (198)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccccc-eEEe
Confidence 334443 257899999999854433 4444
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-22 Score=223.96 Aligned_cols=155 Identities=28% Similarity=0.450 Sum_probs=117.3
Q ss_pred eEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc--------CeEEEEccCccc---ccccHHHHHccCCC--
Q 000746 662 LDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR--------GTVAYVPQISWI---FNATLRKNILFGSE-- 728 (1303)
Q Consensus 662 l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~--------~~iayv~Q~p~l---~~~TireNI~~g~~-- 728 (1303)
|++++||+++|+|+||||||||+++|.|.++|.+|. +.+. ..++|++|+|.+ ++.|++||+.++..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~ 79 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGT-VKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGH 79 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccc
Confidence 578999999999999999999999999999999874 4443 359999999876 45799999987521
Q ss_pred ---C--C----hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH------------------
Q 000746 729 ---F--D----PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN------------------ 781 (1303)
Q Consensus 729 ---~--~----~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~------------------ 781 (1303)
+ + +++..++++..++.+. ......+||||||||++||||++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~ 148 (223)
T TIGR03771 80 IGWLRRPCVADFAAVRDALRRVGLTEL-----------ADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPT 148 (223)
T ss_pred cccccCCcHHHHHHHHHHHHHhCCchh-----------hcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 1 1 1223344444444321 223445699999999999999542
Q ss_pred -----HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHhc
Q 000746 782 -----SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 782 -----~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
+.+.+.. +++|+|++||+++.+. .||+++++ +|++++.|+++++.++
T Consensus 149 ~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~~ 202 (223)
T TIGR03771 149 QELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQDP 202 (223)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcCh
Confidence 2344333 4789999999999765 59999999 8999999999988653
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-22 Score=256.93 Aligned_cols=177 Identities=27% Similarity=0.382 Sum_probs=138.7
Q ss_pred cEEEEeeEEEeCCC---CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----E-----------
Q 000746 640 AVSIKNGNFSWDSK---SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----I----------- 701 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~---~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----~----------- 701 (1303)
.++++|++++|++. .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|.... +
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 58999999999642 36999999999999999999999999999999999999999874321 0
Q ss_pred -cCeEEEEccCccccc-ccHHHHHccCCC---CC-h---hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHH
Q 000746 702 -RGTVAYVPQISWIFN-ATLRKNILFGSE---FD-P---AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQR 772 (1303)
Q Consensus 702 -~~~iayv~Q~p~l~~-~TireNI~~g~~---~~-~---~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQR 772 (1303)
++.++|++|++.+|. .|+.||+.++.. .+ + ++..+.++.+++ +..+.....+||||||||
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl-----------~~~~~~~~~~LS~Gq~qr 152 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGL-----------EDRVEYQPSQLSGGQQQR 152 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCC-----------hhhhcCCcccCCHHHHHH
Confidence 246999999999985 599999986431 11 1 122233333333 333444556899999999
Q ss_pred HHHHHHHHH-----------------------HHHhHhc-CCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHH
Q 000746 773 VSMARAVFN-----------------------SCIKEEL-RGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELS 827 (1303)
Q Consensus 773 iaLARAl~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~ 827 (1303)
++||||+.. +.+++.. +++|+|++||+++.+..||++++|++|+++++|+.+|..
T Consensus 153 v~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 153 VSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 999999642 2333333 489999999999998899999999999999999998774
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-22 Score=270.89 Aligned_cols=180 Identities=17% Similarity=0.278 Sum_probs=141.4
Q ss_pred CcEEEEeeEEEeCCC-CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-----------EcCeEE
Q 000746 639 PAVSIKNGNFSWDSK-SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-----------IRGTVA 706 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~-~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-----------~~~~ia 706 (1303)
..++++|+++.|+++ .++++|+||+|++||+++|+||||||||||+++|+|+.+|++|.+.. .++.||
T Consensus 1936 ~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IG 2015 (2272)
T TIGR01257 1936 DILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMG 2015 (2272)
T ss_pred ceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEE
Confidence 468999999999753 47999999999999999999999999999999999999999975421 134699
Q ss_pred EEccCccccc-ccHHHHHccCC---CCChh----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHH
Q 000746 707 YVPQISWIFN-ATLRKNILFGS---EFDPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARA 778 (1303)
Q Consensus 707 yv~Q~p~l~~-~TireNI~~g~---~~~~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARA 778 (1303)
||||++.++. .|++||+.+.. ..+++ ...+.++.++|.+.. ......||||||||+++|||
T Consensus 2016 y~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~-----------dk~~~~LSGGqKqRLslA~A 2084 (2272)
T TIGR01257 2016 YCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYA-----------DRLAGTYSGGNKRKLSTAIA 2084 (2272)
T ss_pred EEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHh-----------cCChhhCCHHHHHHHHHHHH
Confidence 9999998884 69999998632 12222 223344555544322 23346799999999999999
Q ss_pred HHH-----------------------HHHhHh-cCCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHhc
Q 000746 779 VFN-----------------------SCIKEE-LRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 779 l~~-----------------------~~i~~~-~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
++. +.+.+. .+|+|+|++||+++.+. .||||++|++|+++..|+++++.++
T Consensus 2085 Li~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2085 LIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHH
Confidence 642 234443 25899999999999875 5999999999999999999998654
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-22 Score=216.53 Aligned_cols=139 Identities=24% Similarity=0.387 Sum_probs=103.6
Q ss_pred CCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE--------------EcCeEEEEccCc--cccc
Q 000746 653 KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV--------------IRGTVAYVPQIS--WIFN 716 (1303)
Q Consensus 653 ~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~--------------~~~~iayv~Q~p--~l~~ 716 (1303)
+.++|+|+||+|++||+++|+||||||||||+++|+|.++|++|.+.. .+..++|++|+| .+++
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 83 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFA 83 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhcccc
Confidence 446999999999999999999999999999999999999999875321 123599999998 4778
Q ss_pred ccHHHHHccCC---CCChh----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH--------
Q 000746 717 ATLRKNILFGS---EFDPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN-------- 781 (1303)
Q Consensus 717 ~TireNI~~g~---~~~~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~-------- 781 (1303)
.|++||+.++. ..+++ +..++++..++.+.. .....+||||||||++||||++.
T Consensus 84 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~laral~~~p~llllD 152 (190)
T TIGR01166 84 ADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLR-----------ERPTHCLSGGEKKRVAIAGAVAMRPDVLLLD 152 (190)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhh-----------hCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 89999998753 12322 233344444443222 23446799999999999999642
Q ss_pred ---------------HHHhHhc-CCCEEEEEecCCCc
Q 000746 782 ---------------SCIKEEL-RGKTRILVTNQLHF 802 (1303)
Q Consensus 782 ---------------~~i~~~~-~~~TvilvtH~~~~ 802 (1303)
+.+.+.. +++|+|++||+++.
T Consensus 153 EPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 153 EPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 2333332 47899999999864
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.3e-22 Score=249.50 Aligned_cols=176 Identities=26% Similarity=0.395 Sum_probs=133.2
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc--CeEEEEccCccccc
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR--GTVAYVPQISWIFN 716 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~--~~iayv~Q~p~l~~ 716 (1303)
+.++++|+++.|+++.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|. +.+. .+|+|++|++. ..
T Consensus 507 ~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~-I~~~~~~~igyv~Q~~~-~~ 584 (718)
T PLN03073 507 PIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGT-VFRSAKVRMAVFSQHHV-DG 584 (718)
T ss_pred ceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCce-EEECCceeEEEEecccc-cc
Confidence 46899999999965556999999999999999999999999999999999999999875 4433 36999999873 33
Q ss_pred ccHHHHHcc--C---CCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHHH---------
Q 000746 717 ATLRKNILF--G---SEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFNS--------- 782 (1303)
Q Consensus 717 ~TireNI~~--g---~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~~--------- 782 (1303)
.++.+|+.. . ...+++++.++++..++.++.. ......||||||||++||||++.+
T Consensus 585 l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~----------~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEP 654 (718)
T PLN03073 585 LDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITFKKPHILLLDEP 654 (718)
T ss_pred CCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHh----------cCCccccCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 456666432 1 1234556666676666643221 234567999999999999996421
Q ss_pred ----------HHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEE-EecCHHHH
Q 000746 783 ----------CIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIK-EEGSFEEL 826 (1303)
Q Consensus 783 ----------~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~-~~g~~~~l 826 (1303)
.+.+.+ .+.|+|+|||+++++. .||++++|++|+++ ..|++++.
T Consensus 655 T~~LD~~s~~~l~~~L~~~~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 655 SNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 121211 1359999999999976 59999999999998 67887765
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.5e-20 Score=207.51 Aligned_cols=313 Identities=17% Similarity=0.166 Sum_probs=200.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCcchhHHHhhccHHHHHHHHHH-HHHHHHHHHHHHH
Q 000746 969 FGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILRAPMLFFHTNPIGRVINRFSRDLGDIDRNVAS-FVNMFMNQLWQLL 1047 (1303)
Q Consensus 969 ~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~-~~~~~~~~~~~~i 1047 (1303)
+...++..++...+.+++.+.-..++...|....++|..--...+....+ +|++++..++.. ....++..-.. -
T Consensus 74 ~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~L----rDL~qvR~Fltg~g~~A~fDaPW~-P 148 (580)
T COG4618 74 AFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAPLLRRGSGDGLQPL----RDLDQVRQFLTGTGLTAFFDAPWM-P 148 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHhhcCCCccccch----hhHHHHHHHHcCCCcchhcCCchH-H
Confidence 44556778899999999999999999999999988877643333233332 688999888775 33333332222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHhcChhhHhhcCcHHHHHHHHHHH-
Q 000746 1048 STFVLIGIVSTISLWAIMPLLILFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKS- 1126 (1303)
Q Consensus 1048 ~~~v~i~~~~~~~~~~~~pl~~~~~~i~~~~~~~~r~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~~~~~~~~~- 1126 (1303)
.-+.+++.+.|++.+..+...++.+.+..+-.+..++--+...+..+.-+.+..-+..+..+|+|.|...+..++..+.
T Consensus 149 ~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~ 228 (580)
T COG4618 149 LYLAVIFLFHPWLGLIALAGAIILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFN 228 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHH
Confidence 2333455566666655554444433333333333333334444444556778888999999999999876666555444
Q ss_pred ---HHhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHccCcccccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 000746 1127 ---MDNNIRFTLANTSS---NRWLTIRLETLGGIMIWLIATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQ 1200 (1303)
Q Consensus 1127 ---~d~~~~~~~~~~~~---~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~~~~ 1200 (1303)
++.+.+........ .+.+-..+ ...+...++.+++.+. . ++|.+...--.+.....|+...+..
T Consensus 229 ~~~L~~~~~asd~~~~~~~~Sr~~Rm~l---Qs~iLg~GA~Lvi~ge--~-----t~G~mIA~SIl~gRaLaPid~aI~~ 298 (580)
T COG4618 229 AAYLSAQERASDRNGAFGALSRALRMAL---QSAVLGLGAWLVIKGE--I-----TPGMMIAGSILSGRALAPIDLAIAN 298 (580)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHhcceeeEEcCc--C-----CcchhhHHHHHhhhhhccHHHHHHH
Confidence 33333333332221 11111111 2222223333333222 1 2232222222233455677888888
Q ss_pred HHHHhhhhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCC
Q 000746 1201 ASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTG 1280 (1303)
Q Consensus 1201 ~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTG 1280 (1303)
|.++-.+..|-.|+.+.++..++..+. -..| ..+|.+..|++++.=++...|+|+||||+++|||-+|||||||
T Consensus 299 Wkq~~~Ar~s~~Rl~~lL~~~p~~~~~---m~LP---~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSg 372 (580)
T COG4618 299 WKQFVAARQSYKRLNELLAELPAAAER---MPLP---APQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSG 372 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccccCC---CCCC---CCCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCC
Confidence 999999999999999999865443221 1111 2369999999999766666699999999999999999999999
Q ss_pred CCHHHHHHHHhhcccCCCCeee
Q 000746 1281 AGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1281 SGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
||||||.++|.+.+.|++|.|.
T Consensus 373 SGKSTLaR~lvG~w~p~~G~VR 394 (580)
T COG4618 373 SGKSTLARLLVGIWPPTSGSVR 394 (580)
T ss_pred ccHHHHHHHHHcccccCCCcEE
Confidence 9999999999999999999974
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.8e-22 Score=268.14 Aligned_cols=178 Identities=17% Similarity=0.309 Sum_probs=139.3
Q ss_pred cEEEEeeEEEeCC---CCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCC---CCCCceEEE---------cCe
Q 000746 640 AVSIKNGNFSWDS---KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELP---PLKDASVVI---------RGT 704 (1303)
Q Consensus 640 ~i~~~~~~f~~~~---~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~---~~~g~~~~~---------~~~ 704 (1303)
.++++|+++.|+. ++++|+|+|+++++||+++|+||||||||||+++|+|..+ +++|. +.+ ++.
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~-I~i~G~~~~~~~~~~ 837 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGD-RLVNGRPLDSSFQRS 837 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeE-EEECCEECChhhhcc
Confidence 4789999999952 3469999999999999999999999999999999999987 56664 333 356
Q ss_pred EEEEccCcc-cccccHHHHHccCC------CCChhh----HHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHH
Q 000746 705 VAYVPQISW-IFNATLRKNILFGS------EFDPAK----YWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRV 773 (1303)
Q Consensus 705 iayv~Q~p~-l~~~TireNI~~g~------~~~~~~----~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRi 773 (1303)
++||+|++. +++.|||||+.|+. ..++++ .+++++..+| .+..++.+|+.|.+||||||||+
T Consensus 838 i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L-------~~~~d~~v~~~~~~LSgGqrqRl 910 (1394)
T TIGR00956 838 IGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEM-------ESYADAVVGVPGEGLNVEQRKRL 910 (1394)
T ss_pred eeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCC-------hhhCCCeeCCCCCCCCHHHhhHH
Confidence 999999875 45789999999752 122222 2334444333 34467889998889999999999
Q ss_pred HHHHHHHHH------------------------HHhHh-cCCCEEEEEecCCCc--ccccCEEEEEeCC-EEEEecCHHH
Q 000746 774 SMARAVFNS------------------------CIKEE-LRGKTRILVTNQLHF--LPHVDRIILVSEG-MIKEEGSFEE 825 (1303)
Q Consensus 774 aLARAl~~~------------------------~i~~~-~~~~TvilvtH~~~~--l~~aD~ii~l~~G-~i~~~g~~~~ 825 (1303)
+||||++.+ .+++. .+|+|+|+++|+++. ...+|++++|++| ++++.|+..+
T Consensus 911 ~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~ 990 (1394)
T TIGR00956 911 TIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGE 990 (1394)
T ss_pred HHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCccc
Confidence 999996532 23332 258999999999996 3679999999987 9999999754
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.9e-22 Score=246.06 Aligned_cols=180 Identities=17% Similarity=0.304 Sum_probs=128.1
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----E---------cCeE
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----I---------RGTV 705 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----~---------~~~i 705 (1303)
+.++++|+++.|. .+|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+.. + +..|
T Consensus 264 ~~l~~~~l~~~~~---~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i 340 (510)
T PRK09700 264 TVFEVRNVTSRDR---KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGM 340 (510)
T ss_pred cEEEEeCccccCC---CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCc
Confidence 3699999998763 3899999999999999999999999999999999999998875432 1 1358
Q ss_pred EEEccCc---ccc-cccHHHHHccCCCCChh-------hHHHHHHHHhhHHHhhcCCCCCC-ccccCCCCCCchHHHHHH
Q 000746 706 AYVPQIS---WIF-NATLRKNILFGSEFDPA-------KYWKTVDVSALQHDLDLLPDRDL-TEIGERGVNISGGQKQRV 773 (1303)
Q Consensus 706 ayv~Q~p---~l~-~~TireNI~~g~~~~~~-------~~~~vl~~~~l~~~i~~lp~g~~-T~ige~G~~LSGGQkQRi 773 (1303)
+|++|++ .++ +.|++||+.++...... .+...-+.....+.++.+ |.. .........||||||||+
T Consensus 341 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGq~qrv 418 (510)
T PRK09700 341 AYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELL--ALKCHSVNQNITELSGGNQQKV 418 (510)
T ss_pred EEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhc--CCCCCCccCccccCChHHHHHH
Confidence 9999984 455 46999999876421000 000000001112223332 111 112344567999999999
Q ss_pred HHHHHHHH-----------------------HHHhHh-cCCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCH
Q 000746 774 SMARAVFN-----------------------SCIKEE-LRGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSF 823 (1303)
Q Consensus 774 aLARAl~~-----------------------~~i~~~-~~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~ 823 (1303)
+||||+.. +.+++. .+++|+|+|||+++.+ ..||++++|++|++++.++.
T Consensus 419 ~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 419 LISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred HHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecC
Confidence 99999542 233332 2489999999999876 56999999999999988765
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.5e-22 Score=248.59 Aligned_cols=176 Identities=21% Similarity=0.387 Sum_probs=133.1
Q ss_pred CCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc--CeEEEEccCc--c
Q 000746 638 LPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR--GTVAYVPQIS--W 713 (1303)
Q Consensus 638 ~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~--~~iayv~Q~p--~ 713 (1303)
...++++|+++.|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|. +.+. .+++|++|++ .
T Consensus 310 ~~~l~~~~l~~~y~~-~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~-i~~~~~~~igy~~Q~~~~~ 387 (638)
T PRK10636 310 NPLLKMEKVSAGYGD-RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGE-IGLAKGIKLGYFAQHQLEF 387 (638)
T ss_pred CceEEEEeeEEEeCC-eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCe-EEECCCEEEEEecCcchhh
Confidence 446999999999964 46999999999999999999999999999999999999999875 4443 3699999985 3
Q ss_pred cc-cccHHHHHcc-CCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH----------
Q 000746 714 IF-NATLRKNILF-GSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN---------- 781 (1303)
Q Consensus 714 l~-~~TireNI~~-g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~---------- 781 (1303)
+. +.|+.+++.. .....+++..++++..++..+ ........||||||||++||||++.
T Consensus 388 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~----------~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEP 457 (638)
T PRK10636 388 LRADESPLQHLARLAPQELEQKLRDYLGGFGFQGD----------KVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEP 457 (638)
T ss_pred CCccchHHHHHHHhCchhhHHHHHHHHHHcCCChh----------HhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 43 4588888742 211223344444444443211 1223446799999999999999542
Q ss_pred -------------HHHhHhcCCCEEEEEecCCCccc-ccCEEEEEeCCEEE-EecCHHHHH
Q 000746 782 -------------SCIKEELRGKTRILVTNQLHFLP-HVDRIILVSEGMIK-EEGSFEELS 827 (1303)
Q Consensus 782 -------------~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~-~~g~~~~l~ 827 (1303)
+.+.+. +.|+|+|||+++++. .||+|++|++|+++ ..|++++..
T Consensus 458 t~~LD~~~~~~l~~~L~~~--~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 458 TNHLDLDMRQALTEALIDF--EGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred CCCCCHHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 233333 359999999999975 59999999999997 789988863
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=99.87 E-value=6e-22 Score=201.80 Aligned_cols=118 Identities=31% Similarity=0.531 Sum_probs=101.7
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcC--eEEEEccCccccccc
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRG--TVAYVPQISWIFNAT 718 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~--~iayv~Q~p~l~~~T 718 (1303)
++++|+++.|++. ++++|+||++++||.++|+|+||||||||+++|.|+++|.+| .+.+++ .++|++|
T Consensus 1 l~~~~l~~~~~~~-~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G-~i~~~~~~~i~~~~~-------- 70 (144)
T cd03221 1 IELENLSKTYGGK-LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEG-IVTWGSTVKIGYFEQ-------- 70 (144)
T ss_pred CEEEEEEEEECCc-eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCce-EEEECCeEEEEEEcc--------
Confidence 4689999999753 699999999999999999999999999999999999999887 455554 6999998
Q ss_pred HHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-----------------
Q 000746 719 LRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN----------------- 781 (1303)
Q Consensus 719 ireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~----------------- 781 (1303)
||||||||++||||+..
T Consensus 71 ----------------------------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~ 104 (144)
T cd03221 71 ----------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLE 104 (144)
T ss_pred ----------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH
Confidence 99999999999999642
Q ss_pred ------HHHhHhcCCCEEEEEecCCCccc-ccCEEEEEeCCE
Q 000746 782 ------SCIKEELRGKTRILVTNQLHFLP-HVDRIILVSEGM 816 (1303)
Q Consensus 782 ------~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~~G~ 816 (1303)
+.+++. ++|++++||+++.+. .+|++++|++|+
T Consensus 105 ~~~~l~~~l~~~--~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 105 SIEALEEALKEY--PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred HHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 223332 589999999999885 489999999985
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.9e-22 Score=245.46 Aligned_cols=176 Identities=20% Similarity=0.341 Sum_probs=131.4
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcC--eEEEEccCc-ccc
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRG--TVAYVPQIS-WIF 715 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~--~iayv~Q~p-~l~ 715 (1303)
..++++|+++.|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|. +.+.+ .|+|+||++ .++
T Consensus 323 ~~l~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~-i~~~~~~~i~~v~q~~~~~~ 400 (556)
T PRK11819 323 KVIEAENLSKSFGD-RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGT-IKIGETVKLAYVDQSRDALD 400 (556)
T ss_pred eEEEEEeEEEEECC-eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeE-EEECCceEEEEEeCchhhcC
Confidence 46999999999975 36999999999999999999999999999999999999999875 44444 599999997 555
Q ss_pred -cccHHHHHccCCCC---C--hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH--------
Q 000746 716 -NATLRKNILFGSEF---D--PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN-------- 781 (1303)
Q Consensus 716 -~~TireNI~~g~~~---~--~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~-------- 781 (1303)
+.|++||+.++... + +.+....++..++.+ ........+||||||||++||||++.
T Consensus 401 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD 470 (556)
T PRK11819 401 PNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKG----------GDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLD 470 (556)
T ss_pred CCCCHHHHHHhhcccccccccHHHHHHHHHhCCCCh----------hHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 46999999876421 1 122222222222211 01223456799999999999999642
Q ss_pred ---------------HHHhHhcCCCEEEEEecCCCccc-ccCEEEEEeC-CEEE-EecCHHHHHh
Q 000746 782 ---------------SCIKEELRGKTRILVTNQLHFLP-HVDRIILVSE-GMIK-EEGSFEELSK 828 (1303)
Q Consensus 782 ---------------~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~~-G~i~-~~g~~~~l~~ 828 (1303)
+.+.+. + .|+|+|||+++.+. .||+|++|++ |++. ..|+++++.+
T Consensus 471 EPt~~LD~~~~~~l~~~l~~~-~-~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~ 533 (556)
T PRK11819 471 EPTNDLDVETLRALEEALLEF-P-GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEE 533 (556)
T ss_pred CCCCCCCHHHHHHHHHHHHhC-C-CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHH
Confidence 223222 3 49999999999865 5999999985 7877 4788776644
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-21 Score=229.22 Aligned_cols=175 Identities=25% Similarity=0.360 Sum_probs=135.0
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcC--------------e
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRG--------------T 704 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~--------------~ 704 (1303)
+.++++|++.+|+.- ++|+|+||++.+||+++++|.||+|||||+|.|.|.++|++| .+.+++ .
T Consensus 7 ~ll~~~~i~K~FggV-~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G-~I~~~G~~~~~~sp~~A~~~G 84 (500)
T COG1129 7 PLLELRGISKSFGGV-KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSG-EILIDGKPVAFSSPRDALAAG 84 (500)
T ss_pred ceeeeecceEEcCCc-eeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCc-eEEECCEEccCCCHHHHHhCC
Confidence 468899999999864 699999999999999999999999999999999999999997 444433 4
Q ss_pred EEEEccCcccc-cccHHHHHccCCCCC-------hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHH
Q 000746 705 VAYVPQISWIF-NATLRKNILFGSEFD-------PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMA 776 (1303)
Q Consensus 705 iayv~Q~p~l~-~~TireNI~~g~~~~-------~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLA 776 (1303)
|+.|.|+.-|+ +-||.|||-+|++.. ..+..+..+ .+-+.+.. +...++.| .+||+||||-|+||
T Consensus 85 I~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~--~~l~~lg~-~~~~~~~v----~~LsiaqrQ~VeIA 157 (500)
T COG1129 85 IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRAR--ELLARLGL-DIDPDTLV----GDLSIAQRQMVEIA 157 (500)
T ss_pred cEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHH--HHHHHcCC-CCChhhhh----hhCCHHHHHHHHHH
Confidence 99999999987 779999999987532 233222211 11111111 11133444 56999999999999
Q ss_pred HHHHH-----------------------HHHhHhc-CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecC
Q 000746 777 RAVFN-----------------------SCIKEEL-RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGS 822 (1303)
Q Consensus 777 RAl~~-----------------------~~i~~~~-~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~ 822 (1303)
||+.. +.+++.. +|.++|+||||++.+ .-||+|.||.||+.+..++
T Consensus 158 rAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 158 RALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 99532 1233332 799999999999885 5699999999999998777
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.8e-22 Score=245.37 Aligned_cols=177 Identities=18% Similarity=0.229 Sum_probs=129.6
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc--------------Ce
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR--------------GT 704 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~--------------~~ 704 (1303)
..++++|+++. .+++|+||+|++||+++|+||||||||||+++|+|+++|.+|.+ .+. ..
T Consensus 256 ~~l~~~~~~~~-----~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i-~~~g~~~~~~~~~~~~~~~ 329 (501)
T PRK11288 256 VRLRLDGLKGP-----GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQV-YLDGKPIDIRSPRDAIRAG 329 (501)
T ss_pred cEEEEeccccC-----CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceE-EECCEECCCCCHHHHHhCC
Confidence 35889999842 48999999999999999999999999999999999999988754 332 35
Q ss_pred EEEEccCcc---cc-cccHHHHHccCCCC---------ChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHH
Q 000746 705 VAYVPQISW---IF-NATLRKNILFGSEF---------DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQ 771 (1303)
Q Consensus 705 iayv~Q~p~---l~-~~TireNI~~g~~~---------~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQ 771 (1303)
++|++|+|. ++ +.|+.||+.++... ++.+-+ ....+.++.+.-. .........+|||||||
T Consensus 330 i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~-~~~~~~~~~~LSgGq~q 403 (501)
T PRK11288 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEA-----ENADRFIRSLNIK-TPSREQLIMNLSGGNQQ 403 (501)
T ss_pred CEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHH-----HHHHHHHHhcCcc-cCCccCccccCCHHHHH
Confidence 899999973 55 57999999875311 111100 1112223332110 01123345689999999
Q ss_pred HHHHHHHHHH-----------------------HHHhHhc-CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHH
Q 000746 772 RVSMARAVFN-----------------------SCIKEEL-RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEEL 826 (1303)
Q Consensus 772 RiaLARAl~~-----------------------~~i~~~~-~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l 826 (1303)
|++||||+.. +.+.+.. .+.|+|+|||+++.+ ..||++++|++|++++.|+.++.
T Consensus 404 rl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 483 (501)
T PRK11288 404 KAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQA 483 (501)
T ss_pred HHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEccccC
Confidence 9999999542 2333332 478999999999987 56999999999999999988765
Q ss_pred H
Q 000746 827 S 827 (1303)
Q Consensus 827 ~ 827 (1303)
.
T Consensus 484 ~ 484 (501)
T PRK11288 484 T 484 (501)
T ss_pred C
Confidence 4
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-21 Score=244.65 Aligned_cols=175 Identities=19% Similarity=0.330 Sum_probs=130.5
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcC--eEEEEccCcc-cc
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRG--TVAYVPQISW-IF 715 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~--~iayv~Q~p~-l~ 715 (1303)
+.++++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|.|+.+|++|.+ .+.+ .|+|++|++. ++
T Consensus 321 ~~l~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i-~~~~~~~i~~v~q~~~~~~ 398 (552)
T TIGR03719 321 KVIEAENLSKGFGD-KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTI-KIGETVKLAYVDQSRDALD 398 (552)
T ss_pred eEEEEeeEEEEECC-eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEE-EECCceEEEEEeCCccccC
Confidence 46999999999965 469999999999999999999999999999999999999999754 4443 5999999973 55
Q ss_pred -cccHHHHHccCCCC---C--hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH--------
Q 000746 716 -NATLRKNILFGSEF---D--PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN-------- 781 (1303)
Q Consensus 716 -~~TireNI~~g~~~---~--~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~-------- 781 (1303)
+.|++||+.++... + +.+..+.++..++.++ .......+||||||||++||||+..
T Consensus 399 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGe~qrv~la~al~~~p~lllLD 468 (552)
T TIGR03719 399 PNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGS----------DQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLD 468 (552)
T ss_pred CCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChh----------HhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEe
Confidence 56999999986431 1 1122222222222110 1233456799999999999999643
Q ss_pred ---------------HHHhHhcCCCEEEEEecCCCccc-ccCEEEEEeC-CEEE-EecCHHHHH
Q 000746 782 ---------------SCIKEELRGKTRILVTNQLHFLP-HVDRIILVSE-GMIK-EEGSFEELS 827 (1303)
Q Consensus 782 ---------------~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~~-G~i~-~~g~~~~l~ 827 (1303)
+.+.+. . .|+|+|||+++.+. .||+|++|++ |++. ..|+++++.
T Consensus 469 EPt~~LD~~~~~~l~~~l~~~-~-~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~ 530 (552)
T TIGR03719 469 EPTNDLDVETLRALEEALLEF-A-GCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYE 530 (552)
T ss_pred CCCCCCCHHHHHHHHHHHHHC-C-CeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHH
Confidence 223222 3 59999999999876 5999999986 5876 557776654
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.4e-22 Score=247.04 Aligned_cols=180 Identities=22% Similarity=0.316 Sum_probs=129.2
Q ss_pred CcEEEEeeEEEeCC--CCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCC-CCCceEEE--------------
Q 000746 639 PAVSIKNGNFSWDS--KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP-LKDASVVI-------------- 701 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~--~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~-~~g~~~~~-------------- 701 (1303)
..++++|+++.|+. +.++++|+||+|++||+++|+||||||||||+++|+|.++| .+|. +.+
T Consensus 256 ~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~-i~~~g~~~~~~~~~~~~ 334 (500)
T TIGR02633 256 VILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGN-VFINGKPVDIRNPAQAI 334 (500)
T ss_pred ceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeE-EEECCEECCCCCHHHHH
Confidence 35899999999842 24699999999999999999999999999999999999985 6764 333
Q ss_pred cCeEEEEccCc---ccc-cccHHHHHccCCC--C------ChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHH
Q 000746 702 RGTVAYVPQIS---WIF-NATLRKNILFGSE--F------DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQ 769 (1303)
Q Consensus 702 ~~~iayv~Q~p---~l~-~~TireNI~~g~~--~------~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQ 769 (1303)
+.+++|++|++ .++ +.|++||+.++.. + +++..+ ....+.++.+.-.. .........|||||
T Consensus 335 ~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~-~~~~~~~~~LSgGq 408 (500)
T TIGR02633 335 RAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAEL-----QIIGSAIQRLKVKT-ASPFLPIGRLSGGN 408 (500)
T ss_pred hCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHH-----HHHHHHHHhcCccC-CCccCccccCCHHH
Confidence 23599999996 355 5699999988531 1 111101 11122222221110 01223446799999
Q ss_pred HHHHHHHHHHHH-----------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHH
Q 000746 770 KQRVSMARAVFN-----------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFE 824 (1303)
Q Consensus 770 kQRiaLARAl~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~ 824 (1303)
|||++||||+.. +.+.... ++.|+|++||+++.+. .||++++|++|+++..++.+
T Consensus 409 kqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~ 488 (500)
T TIGR02633 409 QQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNH 488 (500)
T ss_pred HHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccc
Confidence 999999999642 2233322 5789999999999875 69999999999999876544
Q ss_pred H
Q 000746 825 E 825 (1303)
Q Consensus 825 ~ 825 (1303)
+
T Consensus 489 ~ 489 (500)
T TIGR02633 489 A 489 (500)
T ss_pred c
Confidence 3
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-21 Score=246.99 Aligned_cols=178 Identities=22% Similarity=0.330 Sum_probs=131.5
Q ss_pred CCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcC--eEEEEccCc-cc
Q 000746 638 LPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRG--TVAYVPQIS-WI 714 (1303)
Q Consensus 638 ~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~--~iayv~Q~p-~l 714 (1303)
...++++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+ .+.. .|+|++|++ .+
T Consensus 317 ~~~l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i-~~~~~~~i~y~~q~~~~l 394 (635)
T PRK11147 317 KIVFEMENVNYQIDG-KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRI-HCGTKLEVAYFDQHRAEL 394 (635)
T ss_pred CceEEEeeeEEEECC-eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEE-EECCCcEEEEEeCccccc
Confidence 346899999999975 469999999999999999999999999999999999999998754 4433 599999986 35
Q ss_pred c-cccHHHHHccCCC-C--C--hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-------
Q 000746 715 F-NATLRKNILFGSE-F--D--PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN------- 781 (1303)
Q Consensus 715 ~-~~TireNI~~g~~-~--~--~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~------- 781 (1303)
+ +.|+.||+.++.+ . + +.+..+.++..++..+ ........||||||||++||||++.
T Consensus 395 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGekqRl~la~al~~~p~lLlL 464 (635)
T PRK11147 395 DPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPK----------RAMTPVKALSGGERNRLLLARLFLKPSNLLIL 464 (635)
T ss_pred CCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHH----------HHhChhhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 4 4599999987542 1 1 1122222222222111 1223345799999999999999642
Q ss_pred ------------HHHhHhcC--CCEEEEEecCCCccc-ccCEEEEEe-CCEEEE-ecCHHHHH
Q 000746 782 ------------SCIKEELR--GKTRILVTNQLHFLP-HVDRIILVS-EGMIKE-EGSFEELS 827 (1303)
Q Consensus 782 ------------~~i~~~~~--~~TvilvtH~~~~l~-~aD~ii~l~-~G~i~~-~g~~~~l~ 827 (1303)
+.+.+.++ +.|+|+|||+.+++. .||+|++++ +|++.+ .|+|++..
T Consensus 465 DEPt~~LD~~~~~~l~~~l~~~~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~ 527 (635)
T PRK11147 465 DEPTNDLDVETLELLEELLDSYQGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDAR 527 (635)
T ss_pred cCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHH
Confidence 12222221 469999999999875 599999998 899876 57787763
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.1e-22 Score=196.56 Aligned_cols=180 Identities=22% Similarity=0.376 Sum_probs=128.2
Q ss_pred EEEEeeEEEeCCC--------CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------
Q 000746 641 VSIKNGNFSWDSK--------SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------ 700 (1303)
Q Consensus 641 i~~~~~~f~~~~~--------~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------ 700 (1303)
++++|++.++... ..+.+.|||++++|+..+|+|.||||||||.+.|.|.++|++|....
T Consensus 5 LeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~ 84 (267)
T COG4167 5 LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSF 84 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHh
Confidence 4556665554322 14789999999999999999999999999999999999999975432
Q ss_pred EcCeEEEEccCccc-cc-----ccH-----HHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHH
Q 000746 701 IRGTVAYVPQISWI-FN-----ATL-----RKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQ 769 (1303)
Q Consensus 701 ~~~~iayv~Q~p~l-~~-----~Ti-----reNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQ 769 (1303)
..++|-.+.|||-- || |+| +-|-.+..+...+++.+.++.++|..|-..+ ....||-||
T Consensus 85 R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~----------~~~~la~~Q 154 (267)
T COG4167 85 RSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANY----------YPHMLAPGQ 154 (267)
T ss_pred hhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCcccccc----------chhhcCchh
Confidence 12469999999842 22 222 2222222222234555566666665442221 245699999
Q ss_pred HHHHHHHHHHH--------HHHHh-----------H------hcCCCEEEEEecCCCcccc-cCEEEEEeCCEEEEecCH
Q 000746 770 KQRVSMARAVF--------NSCIK-----------E------ELRGKTRILVTNQLHFLPH-VDRIILVSEGMIKEEGSF 823 (1303)
Q Consensus 770 kQRiaLARAl~--------~~~i~-----------~------~~~~~TvilvtH~~~~l~~-aD~ii~l~~G~i~~~g~~ 823 (1303)
|||||||||++ ++++. + ...|-.-|.|++++-.+++ +|+|+||++|+++|.|+.
T Consensus 155 KQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t 234 (267)
T COG4167 155 KQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGST 234 (267)
T ss_pred HHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCCh
Confidence 99999999953 22221 1 1148899999999999876 899999999999999999
Q ss_pred HHHHhcc
Q 000746 824 EELSKHG 830 (1303)
Q Consensus 824 ~~l~~~~ 830 (1303)
.++...+
T Consensus 235 ~~v~a~P 241 (267)
T COG4167 235 ADVLASP 241 (267)
T ss_pred hhhhcCC
Confidence 9998654
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.9e-22 Score=244.07 Aligned_cols=170 Identities=20% Similarity=0.256 Sum_probs=132.1
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcCeEEEEccCccc-ccc
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISWI-FNA 717 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~~iayv~Q~p~l-~~~ 717 (1303)
..++++|+++.|++ ..|+++|++|++||+++|+||||||||||+++|.|+++|++|. +.+...++|+||++.+ ++.
T Consensus 339 ~~l~~~~ls~~~~~--~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~-I~~~~~i~y~~Q~~~~~~~~ 415 (590)
T PRK13409 339 TLVEYPDLTKKLGD--FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGE-VDPELKISYKPQYIKPDYDG 415 (590)
T ss_pred eEEEEcceEEEECC--EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEEeeeEEEecccccCCCCC
Confidence 46899999999964 3599999999999999999999999999999999999999874 4445679999999875 477
Q ss_pred cHHHHHccCCC-CC-hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH--------------
Q 000746 718 TLRKNILFGSE-FD-PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN-------------- 781 (1303)
Q Consensus 718 TireNI~~g~~-~~-~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~-------------- 781 (1303)
|++||+.++.. ++ +....++++..++.+. ......+||||||||++||||+..
T Consensus 416 tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~-----------~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~L 484 (590)
T PRK13409 416 TVEDLLRSITDDLGSSYYKSEIIKPLQLERL-----------LDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHL 484 (590)
T ss_pred cHHHHHHHHhhhcChHHHHHHHHHHCCCHHH-----------HhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCC
Confidence 99999987532 22 2233445555555422 223446799999999999999642
Q ss_pred ---------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCH
Q 000746 782 ---------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSF 823 (1303)
Q Consensus 782 ---------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~ 823 (1303)
+.+++.. .++|+|+|||+++.+. .||++++|++ ++...|+.
T Consensus 485 D~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~~ 537 (590)
T PRK13409 485 DVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGHA 537 (590)
T ss_pred CHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeeec
Confidence 3344432 3789999999999865 5999999965 77777763
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-21 Score=241.87 Aligned_cols=174 Identities=21% Similarity=0.345 Sum_probs=128.5
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc--------------Ce
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR--------------GT 704 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~--------------~~ 704 (1303)
+.++++|+++ ++|+|+||+|++||+++|+||||||||||+++|.|+++|++|.+ .+. ..
T Consensus 256 ~~l~~~~l~~------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I-~~~g~~i~~~~~~~~~~~~ 328 (501)
T PRK10762 256 VRLKVDNLSG------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYV-TLDGHEVVTRSPQDGLANG 328 (501)
T ss_pred cEEEEeCccc------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEE-EECCEECCCCCHHHHHHCC
Confidence 4689999984 37999999999999999999999999999999999999988743 332 35
Q ss_pred EEEEccCc---ccc-cccHHHHHccCCC---------CChhhHHHHHHHHhhHHHhhcCCCCCC-ccccCCCCCCchHHH
Q 000746 705 VAYVPQIS---WIF-NATLRKNILFGSE---------FDPAKYWKTVDVSALQHDLDLLPDRDL-TEIGERGVNISGGQK 770 (1303)
Q Consensus 705 iayv~Q~p---~l~-~~TireNI~~g~~---------~~~~~~~~vl~~~~l~~~i~~lp~g~~-T~ige~G~~LSGGQk 770 (1303)
++|+||+| .++ +.|++||+.++.. .+.++.. ....+.++.+ |.. .........||||||
T Consensus 329 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgGek 401 (501)
T PRK10762 329 IVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQ-----QAVSDFIRLF--NIKTPSMEQAIGLLSGGNQ 401 (501)
T ss_pred CEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHH-----HHHHHHHHhc--CCCCCCccCchhhCCHHHH
Confidence 99999997 354 5799999987521 1111111 1112222322 111 123445668999999
Q ss_pred HHHHHHHHHHH-----------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHH
Q 000746 771 QRVSMARAVFN-----------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEE 825 (1303)
Q Consensus 771 QRiaLARAl~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~ 825 (1303)
||++||||++. +.+++.. +|+|+|++||+++.+. .||+|++|++|+++..|+.++
T Consensus 402 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 481 (501)
T PRK10762 402 QKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQ 481 (501)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecccc
Confidence 99999999642 2333332 4789999999999864 699999999999999998776
Q ss_pred H
Q 000746 826 L 826 (1303)
Q Consensus 826 l 826 (1303)
+
T Consensus 482 ~ 482 (501)
T PRK10762 482 A 482 (501)
T ss_pred C
Confidence 5
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-21 Score=204.24 Aligned_cols=162 Identities=28% Similarity=0.373 Sum_probs=131.1
Q ss_pred CccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcCeEEEEccCcc--cccccHHHHHccCC-----
Q 000746 655 PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISW--IFNATLRKNILFGS----- 727 (1303)
Q Consensus 655 ~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~~iayv~Q~p~--l~~~TireNI~~g~----- 727 (1303)
.+|+||||++++||.++|+|+||||||||+++|.|.++|++| .+..+++|++.-.-.. -.+.|-||||.+-.
T Consensus 41 ~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G-~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~ 119 (249)
T COG1134 41 WALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSG-KVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGL 119 (249)
T ss_pred EEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCc-eEEEcceEehhhhcccCCCcccchHHHHHHHHHHhCc
Confidence 589999999999999999999999999999999999999997 6778898885544332 23569999997532
Q ss_pred --CCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHH--------------------HHHHHh
Q 000746 728 --EFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAV--------------------FNSCIK 785 (1303)
Q Consensus 728 --~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl--------------------~~~~i~ 785 (1303)
+.-+++++++++-+.|.+.++. | -.+.|-|.+.|++.|=|. .++|..
T Consensus 120 ~~~ei~~~~~eIieFaELG~fi~~-P----------vktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~ 188 (249)
T COG1134 120 TRKEIDEKVDEIIEFAELGDFIDQ-P----------VKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLE 188 (249)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhC-c----------hhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHH
Confidence 2335677788888888766542 3 357999999999999882 233433
Q ss_pred ---Hh-cCCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHh
Q 000746 786 ---EE-LRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 786 ---~~-~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
+. .+++|+|+|||+++.++ .||++++|++|++...|++++..+
T Consensus 189 rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~ 236 (249)
T COG1134 189 RLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP 236 (249)
T ss_pred HHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHH
Confidence 33 47899999999999975 599999999999999999999874
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.7e-22 Score=228.18 Aligned_cols=146 Identities=27% Similarity=0.380 Sum_probs=111.2
Q ss_pred EEcCCCCChHHHHHHHhcCCCCCCCceEEE-----------cCeEEEEccCccccc-ccHHHHHccCCC---CChh----
Q 000746 672 IVGGTGEGKTSLVSAMLGELPPLKDASVVI-----------RGTVAYVPQISWIFN-ATLRKNILFGSE---FDPA---- 732 (1303)
Q Consensus 672 ivG~sGsGKSTLl~~llg~~~~~~g~~~~~-----------~~~iayv~Q~p~l~~-~TireNI~~g~~---~~~~---- 732 (1303)
|+||||||||||+++|+|+++|++|. +.+ ++.++|++|++.+|. .|++||+.|+.. .+++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~-I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~ 79 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGS-IMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKP 79 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceE-EEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHH
Confidence 58999999999999999999999874 333 236999999999985 599999998642 2222
Q ss_pred hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-----------------------HHHhHhc-
Q 000746 733 KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN-----------------------SCIKEEL- 788 (1303)
Q Consensus 733 ~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~-----------------------~~i~~~~- 788 (1303)
+..++++..++.+ .......+||||||||++||||+.. +.+.+..
T Consensus 80 ~~~~~l~~~~l~~-----------~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~ 148 (325)
T TIGR01187 80 RVLEALRLVQLEE-----------FADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQE 148 (325)
T ss_pred HHHHHHHHcCCcc-----------hhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence 2333444333322 2233456899999999999999642 2333332
Q ss_pred -CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHhc
Q 000746 789 -RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 789 -~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
.++|+|+|||+++.+. .||+|++|++|++.+.|+++++.+.
T Consensus 149 ~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~ 191 (325)
T TIGR01187 149 QLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEE 191 (325)
T ss_pred hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 3799999999998864 6999999999999999999998764
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-21 Score=242.03 Aligned_cols=175 Identities=19% Similarity=0.359 Sum_probs=127.8
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc--------------Ce
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR--------------GT 704 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~--------------~~ 704 (1303)
..++++|++. .+|+|+||++++|++++|+||||||||||+++|.|+++|.+|. +.+. ..
T Consensus 267 ~~l~~~~l~~------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~-i~~~g~~i~~~~~~~~~~~~ 339 (510)
T PRK15439 267 PVLTVEDLTG------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGR-IMLNGKEINALSTAQRLARG 339 (510)
T ss_pred ceEEEeCCCC------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcE-EEECCEECCCCCHHHHHhCC
Confidence 3589999983 2699999999999999999999999999999999999998874 3332 35
Q ss_pred EEEEccCc---ccc-cccHHHHHccCC----CC--ChhhHHHHHHHHhhHHHhhcCCCCCC-ccccCCCCCCchHHHHHH
Q 000746 705 VAYVPQIS---WIF-NATLRKNILFGS----EF--DPAKYWKTVDVSALQHDLDLLPDRDL-TEIGERGVNISGGQKQRV 773 (1303)
Q Consensus 705 iayv~Q~p---~l~-~~TireNI~~g~----~~--~~~~~~~vl~~~~l~~~i~~lp~g~~-T~ige~G~~LSGGQkQRi 773 (1303)
|+|+||++ -++ +.|+.||+.... .. .....++ ..++.++.+ |.. .........||||||||+
T Consensus 340 i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LSgG~kqrl 412 (510)
T PRK15439 340 LVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENA-----VLERYRRAL--NIKFNHAEQAARTLSGGNQQKV 412 (510)
T ss_pred cEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHH-----HHHHHHHHc--CCCCCCccCccccCCcHHHHHH
Confidence 99999986 255 459999996421 11 1111111 112223332 111 123345567999999999
Q ss_pred HHHHHHHH-----------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHH
Q 000746 774 SMARAVFN-----------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELS 827 (1303)
Q Consensus 774 aLARAl~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~ 827 (1303)
+||||+.. +.+.+.. +++|+|+|||+++.+. .||++++|++|+++..|+.+++.
T Consensus 413 ~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 491 (510)
T PRK15439 413 LIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAIN 491 (510)
T ss_pred HHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCC
Confidence 99999642 2333332 4899999999999875 59999999999999999887765
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-21 Score=218.42 Aligned_cols=165 Identities=22% Similarity=0.233 Sum_probs=118.6
Q ss_pred EeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceE----------EE------------
Q 000746 644 KNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASV----------VI------------ 701 (1303)
Q Consensus 644 ~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~----------~~------------ 701 (1303)
.|++++|++..++|+|+| .+++||+++|+||||||||||+++|+|+++|++|.+. .+
T Consensus 4 ~~~~~~y~~~~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~ 82 (255)
T cd03236 4 DEPVHRYGPNSFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKL 82 (255)
T ss_pred cCcceeecCcchhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHh
Confidence 468899975546999999 5999999999999999999999999999999998642 01
Q ss_pred -cC--eEEEEccCcccccccHHHHHccCC-CC-ChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHH
Q 000746 702 -RG--TVAYVPQISWIFNATLRKNILFGS-EF-DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMA 776 (1303)
Q Consensus 702 -~~--~iayv~Q~p~l~~~TireNI~~g~-~~-~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLA 776 (1303)
++ .++|++|++.++..++.+|+...- .. .+++..++++..++. .....+..+||||||||++||
T Consensus 83 ~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LS~G~~qrv~la 151 (255)
T cd03236 83 LEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELR-----------HVLDRNIDQLSGGELQRVAIA 151 (255)
T ss_pred hhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCc-----------hhhcCChhhCCHHHHHHHHHH
Confidence 11 368888887766655555554321 11 123444444444332 234456678999999999999
Q ss_pred HHHHH-----------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEec
Q 000746 777 RAVFN-----------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEG 821 (1303)
Q Consensus 777 RAl~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g 821 (1303)
||++. +.+++.. +++|+|++||+++.+. .||+|++|+ |++.+.|
T Consensus 152 ral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 152 AALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred HHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCCCcce
Confidence 99642 2333332 4799999999999987 599999995 5565433
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.4e-21 Score=184.23 Aligned_cols=159 Identities=25% Similarity=0.425 Sum_probs=121.4
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCC---CCceEE-----------EcCeEE
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPL---KDASVV-----------IRGTVA 706 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~---~g~~~~-----------~~~~ia 706 (1303)
+.++|++..-++. -.|.|+|++|.+||++-+.||||||||||+.-+.|.+.+. +| ..+ -++++|
T Consensus 3 l~l~nvsl~l~g~-cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G-~~~l~~~~l~~lPa~qRq~G 80 (213)
T COG4136 3 LCLKNVSLRLPGS-CLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTG-ELWLNEQRLDMLPAAQRQIG 80 (213)
T ss_pred eeeeeeeecCCCc-eEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceee-EEEECCeeccccchhhhhee
Confidence 5688999877654 5799999999999999999999999999999999998763 23 232 246899
Q ss_pred EEccCcccc-cccHHHHHccCCCCC------hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHH
Q 000746 707 YVPQISWIF-NATLRKNILFGSEFD------PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAV 779 (1303)
Q Consensus 707 yv~Q~p~l~-~~TireNI~~g~~~~------~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl 779 (1303)
...||+|+| .-+|-+||.|.-|.+ ......+++..+|+..+.+.| .+||||||.||+|-|++
T Consensus 81 iLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP-----------~tlSGGQrARvaL~R~L 149 (213)
T COG4136 81 ILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDP-----------ATLSGGQRARVALLRAL 149 (213)
T ss_pred eeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcCh-----------hhcCcchHHHHHHHHHH
Confidence 999999999 569999999987643 122344566666666555544 56999999999999996
Q ss_pred HH---------------HHHhHh----------cCCCEEEEEecCCCcccccCEEEEE
Q 000746 780 FN---------------SCIKEE----------LRGKTRILVTNQLHFLPHVDRIILV 812 (1303)
Q Consensus 780 ~~---------------~~i~~~----------~~~~TvilvtH~~~~l~~aD~ii~l 812 (1303)
+. .++++. ..+--+|+|||+.+..+.-.+|+.|
T Consensus 150 la~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVie~ 207 (213)
T COG4136 150 LAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVIEM 207 (213)
T ss_pred HhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeeeee
Confidence 42 222221 1477899999999998865566554
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-21 Score=239.00 Aligned_cols=171 Identities=22% Similarity=0.364 Sum_probs=123.7
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCC-CCCceEE-------------EcCe
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP-LKDASVV-------------IRGT 704 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~-~~g~~~~-------------~~~~ 704 (1303)
+.++++|+++.|++ ..+|+|+||++++||+++|+||||||||||+++|+|+.++ .+|.+.. .+.+
T Consensus 259 ~~l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 337 (490)
T PRK10938 259 PRIVLNNGVVSYND-RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKH 337 (490)
T ss_pred ceEEEeceEEEECC-eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhh
Confidence 46999999999975 3699999999999999999999999999999999998765 4664321 1245
Q ss_pred EEEEccCcccc---cccHHHHHccCCC--------CCh---hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHH
Q 000746 705 VAYVPQISWIF---NATLRKNILFGSE--------FDP---AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQK 770 (1303)
Q Consensus 705 iayv~Q~p~l~---~~TireNI~~g~~--------~~~---~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQk 770 (1303)
|+|++|++.++ ..|+++++.++.. ..+ ++..+.++.+++.++ .......+||||||
T Consensus 338 i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGq~ 407 (490)
T PRK10938 338 IGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKR----------TADAPFHSLSWGQQ 407 (490)
T ss_pred ceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchh----------hccCchhhCCHHHH
Confidence 99999998664 2477777754310 111 223333433333221 12234467999999
Q ss_pred HHHHHHHHHHH-----------------------HHHhHhc-CC-CEEEEEecCCCcccc--cCEEEEEeCCEEEEe
Q 000746 771 QRVSMARAVFN-----------------------SCIKEEL-RG-KTRILVTNQLHFLPH--VDRIILVSEGMIKEE 820 (1303)
Q Consensus 771 QRiaLARAl~~-----------------------~~i~~~~-~~-~TvilvtH~~~~l~~--aD~ii~l~~G~i~~~ 820 (1303)
||++||||+.. +.+.+.. ++ .|+|+|||+++.+.. ||++++|++|++++.
T Consensus 408 qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 408 RLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred HHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEe
Confidence 99999999642 2233332 33 469999999999863 899999999998864
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.1e-21 Score=201.07 Aligned_cols=121 Identities=30% Similarity=0.343 Sum_probs=99.9
Q ss_pred EeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcC-eEEEEccCcccccccHHHH
Q 000746 644 KNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRG-TVAYVPQISWIFNATLRKN 722 (1303)
Q Consensus 644 ~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~-~iayv~Q~p~l~~~TireN 722 (1303)
.|+++.|++ .+++++ ++++++||+++|+||||||||||+++|+|+++|++| .+.+.+ .++|++|++.
T Consensus 4 ~~l~~~~~~-~~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~i~~~~q~~~--------- 71 (177)
T cd03222 4 PDCVKRYGV-FFLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGD-NDEWDGITPVYKPQYID--------- 71 (177)
T ss_pred CCeEEEECC-EEEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCc-EEEECCEEEEEEcccCC---------
Confidence 578888865 467888 499999999999999999999999999999999887 455655 5899998653
Q ss_pred HccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH---------------------
Q 000746 723 ILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN--------------------- 781 (1303)
Q Consensus 723 I~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~--------------------- 781 (1303)
||||||||++||||+..
T Consensus 72 ------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~ 109 (177)
T cd03222 72 ------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLN 109 (177)
T ss_pred ------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHH
Confidence 99999999999999542
Q ss_pred --HHHhHhc-C-CCEEEEEecCCCccc-ccCEEEEEeCCEEE
Q 000746 782 --SCIKEEL-R-GKTRILVTNQLHFLP-HVDRIILVSEGMIK 818 (1303)
Q Consensus 782 --~~i~~~~-~-~~TvilvtH~~~~l~-~aD~ii~l~~G~i~ 818 (1303)
+.+.+.. + ++|+|++||+++.+. .||++++|+++..+
T Consensus 110 l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~ 151 (177)
T cd03222 110 AARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGV 151 (177)
T ss_pred HHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCcc
Confidence 2333332 3 489999999999987 59999999887554
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4e-21 Score=201.58 Aligned_cols=177 Identities=24% Similarity=0.346 Sum_probs=129.5
Q ss_pred CCCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-------------EcC
Q 000746 637 ELPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-------------IRG 703 (1303)
Q Consensus 637 ~~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-------------~~~ 703 (1303)
..+.|+++|+++.|.+ +++|+|||++|++||..+|+|||||||||||+.+.|+.+|.+|.... +|+
T Consensus 28 ~~~li~l~~v~v~r~g-k~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk 106 (257)
T COG1119 28 NEPLIELKNVSVRRNG-KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRK 106 (257)
T ss_pred CcceEEecceEEEECC-EeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHH
Confidence 3456999999999975 47999999999999999999999999999999999999998764321 467
Q ss_pred eEEEEccC---cccccccHHHHHccCC---------CCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHH
Q 000746 704 TVAYVPQI---SWIFNATLRKNILFGS---------EFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQ 771 (1303)
Q Consensus 704 ~iayv~Q~---p~l~~~TireNI~~g~---------~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQ 771 (1303)
+||||+-+ -+.-+.+++|-++=|. +++++++.++-. +.+.+ |.....+..=..||-||||
T Consensus 107 ~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~---lle~~-----g~~~la~r~~~~LS~Ge~r 178 (257)
T COG1119 107 RIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQW---LLELL-----GAKHLADRPFGSLSQGEQR 178 (257)
T ss_pred HhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHH---HHHHc-----chhhhccCchhhcCHhHHH
Confidence 89999843 2333678888887331 345554443322 11111 1111222333579999999
Q ss_pred HHHHHHHHHHH-----------------------HHhHhc---CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecC
Q 000746 772 RVSMARAVFNS-----------------------CIKEEL---RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGS 822 (1303)
Q Consensus 772 RiaLARAl~~~-----------------------~i~~~~---~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~ 822 (1303)
|+-||||++.+ .+.+.. .+.|+|+|||+.+.++ ..++++.+++|+++.+|.
T Consensus 179 rvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 179 RVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence 99999996421 122222 3789999999999865 579999999999998874
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-20 Score=232.45 Aligned_cols=177 Identities=20% Similarity=0.310 Sum_probs=126.5
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc--------------Ce
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR--------------GT 704 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~--------------~~ 704 (1303)
..|+++|+++.+ .++|+|+||++++||+++|+||||||||||+++|.|+.+|++|. +.+. ..
T Consensus 249 ~~i~~~~l~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~i~~~~~~~~~~~~ 324 (491)
T PRK10982 249 VILEVRNLTSLR---QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGT-ITLHGKKINNHNANEAINHG 324 (491)
T ss_pred cEEEEeCccccc---CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccE-EEECCEECCCCCHHHHHHCC
Confidence 468999999874 35999999999999999999999999999999999999998874 4332 23
Q ss_pred EEEEccCcc---cc-cccHHHHHccC-----CC----CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHH
Q 000746 705 VAYVPQISW---IF-NATLRKNILFG-----SE----FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQ 771 (1303)
Q Consensus 705 iayv~Q~p~---l~-~~TireNI~~g-----~~----~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQ 771 (1303)
++|++|++. +| +.|+.+|+... .. .+..... ....+.++.+.-+.+ .......+|||||||
T Consensus 325 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~-~~~~~~~~LSgGq~q 398 (491)
T PRK10982 325 FALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMK-----SDTQWVIDSMRVKTP-GHRTQIGSLSGGNQQ 398 (491)
T ss_pred CEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHH-----HHHHHHHHhcCccCC-CcccccccCCcHHHH
Confidence 899999863 45 45777774332 11 1111111 112223333321111 134556789999999
Q ss_pred HHHHHHHHHH-----------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHH
Q 000746 772 RVSMARAVFN-----------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEE 825 (1303)
Q Consensus 772 RiaLARAl~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~ 825 (1303)
|++||||+.. +.+.... +++|+|++||+++.+. .||++++|++|+++..++.++
T Consensus 399 rv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~~ 477 (491)
T PRK10982 399 KVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTKT 477 (491)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEcccc
Confidence 9999999532 2233322 5899999999999864 699999999999998776643
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.1e-20 Score=212.05 Aligned_cols=171 Identities=21% Similarity=0.344 Sum_probs=132.6
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc--------------Ce
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR--------------GT 704 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~--------------~~ 704 (1303)
..+++++++..|+ .-.+++||||++++||+.++.|.||+|||||.+.|.|.|+|++|.+ .++ ..
T Consensus 3 ~~l~~~~itK~f~-~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI-~v~G~~v~~~sP~dA~~~G 80 (501)
T COG3845 3 PALEMRGITKRFP-GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEI-RVDGKEVRIKSPRDAIRLG 80 (501)
T ss_pred ceEEEeccEEEcC-CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceE-EECCEEeccCCHHHHHHcC
Confidence 4689999999998 4468999999999999999999999999999999999999999854 333 35
Q ss_pred EEEEccCcccc-cccHHHHHccCCCCC------hh----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHH
Q 000746 705 VAYVPQISWIF-NATLRKNILFGSEFD------PA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRV 773 (1303)
Q Consensus 705 iayv~Q~p~l~-~~TireNI~~g~~~~------~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRi 773 (1303)
||.|.|++-|+ +-|+.|||.+|.+-. .. +..+..+..+ ||--.+ +.-..||-||||||
T Consensus 81 IGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yG-------l~vdp~----~~V~dLsVG~qQRV 149 (501)
T COG3845 81 IGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYG-------LPVDPD----AKVADLSVGEQQRV 149 (501)
T ss_pred CcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhC-------CCCCcc----ceeecCCcchhHHH
Confidence 99999999998 569999999998632 11 2222222222 222222 34456999999999
Q ss_pred HHHHHHHHH-----------------------HHhHh-cCCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecC
Q 000746 774 SMARAVFNS-----------------------CIKEE-LRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGS 822 (1303)
Q Consensus 774 aLARAl~~~-----------------------~i~~~-~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~ 822 (1303)
-|-+||+++ .++.. ..|+|||+|||+++.+. .||++-||..|+++..-+
T Consensus 150 EIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 150 EILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec
Confidence 999997642 12222 26999999999998865 599999999999875443
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-20 Score=191.53 Aligned_cols=164 Identities=24% Similarity=0.351 Sum_probs=126.2
Q ss_pred CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc-------------CeEEEEccCccc---ccc
Q 000746 654 SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR-------------GTVAYVPQISWI---FNA 717 (1303)
Q Consensus 654 ~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~-------------~~iayv~Q~p~l---~~~ 717 (1303)
+++|+++|++|++|+++.|+|.||+|||||+++|.|.+.|++|.+ .+. ..++-|.|+|-- -+.
T Consensus 19 k~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I-~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~l 97 (263)
T COG1101 19 KRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQI-LIDGVDVTKKSVAKRANLLARVFQDPLAGTAPEL 97 (263)
T ss_pred HHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceE-EECceecccCCHHHHhhHHHHHhcchhhCCcccc
Confidence 479999999999999999999999999999999999999998744 332 247889999963 367
Q ss_pred cHHHHHccCCC------CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH--------H-
Q 000746 718 TLRKNILFGSE------FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN--------S- 782 (1303)
Q Consensus 718 TireNI~~g~~------~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~--------~- 782 (1303)
||.||+..... +....-.+ ....-.+.+..++.|++-.++++-.-|||||||-++|+-|.+. +
T Consensus 98 TieENl~la~~Rg~~rgl~~~ln~~--~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEH 175 (263)
T COG1101 98 TIEENLALAESRGKKRGLSSALNER--RRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEH 175 (263)
T ss_pred cHHHHHHHHHhcCcccccchhhhHH--HHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecch
Confidence 99999987431 21110000 1122334578889999988888888999999999999999431 1
Q ss_pred ----------HHh----Hh--cCCCEEEEEecCCCc-ccccCEEEEEeCCEEEEe
Q 000746 783 ----------CIK----EE--LRGKTRILVTNQLHF-LPHVDRIILVSEGMIKEE 820 (1303)
Q Consensus 783 ----------~i~----~~--~~~~TvilvtH~~~~-l~~aD~ii~l~~G~i~~~ 820 (1303)
.+. +. -.+-|.+||||+++. +.+-+|.++|++|+|+-.
T Consensus 176 TAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlD 230 (263)
T COG1101 176 TAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLD 230 (263)
T ss_pred hhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEE
Confidence 011 11 136799999999986 788999999999999964
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.7e-20 Score=247.68 Aligned_cols=178 Identities=20% Similarity=0.347 Sum_probs=135.0
Q ss_pred cEEEEeeEEEeCC------------CCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCC--CCCceEEE----
Q 000746 640 AVSIKNGNFSWDS------------KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP--LKDASVVI---- 701 (1303)
Q Consensus 640 ~i~~~~~~f~~~~------------~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~--~~g~~~~~---- 701 (1303)
.+.++|+++..+. +..+|+|+|+++++|++++|+||||||||||+++|+|..++ .+|. +.+
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~-I~inG~~ 945 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGD-IRISGFP 945 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccce-EEECCcc
Confidence 5899999998742 12689999999999999999999999999999999998763 4553 333
Q ss_pred ------cCeEEEEccCcccc-cccHHHHHccCC------CCChh----hHHHHHHHHhhHHHhhcCCCCCCccccCCC-C
Q 000746 702 ------RGTVAYVPQISWIF-NATLRKNILFGS------EFDPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERG-V 763 (1303)
Q Consensus 702 ------~~~iayv~Q~p~l~-~~TireNI~~g~------~~~~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G-~ 763 (1303)
++.++||+|++.++ +.||+||+.|+. ..+++ +.+++++..+|. +-.++.+|..+ .
T Consensus 946 ~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~-------~~~~~~vg~~~~~ 1018 (1470)
T PLN03140 946 KKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELD-------NLKDAIVGLPGVT 1018 (1470)
T ss_pred CChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCCh-------hHhCCccCCCCCC
Confidence 24589999998776 569999998752 12222 234445544443 23467777655 5
Q ss_pred CCchHHHHHHHHHHHHHH-----------------------HHHhHhc-CCCEEEEEecCCCc--ccccCEEEEEeC-CE
Q 000746 764 NISGGQKQRVSMARAVFN-----------------------SCIKEEL-RGKTRILVTNQLHF--LPHVDRIILVSE-GM 816 (1303)
Q Consensus 764 ~LSGGQkQRiaLARAl~~-----------------------~~i~~~~-~~~TvilvtH~~~~--l~~aD~ii~l~~-G~ 816 (1303)
.||||||||++||||++. +.+++.. +|+|+|+++|+++. ...+|++++|++ |+
T Consensus 1019 ~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~ 1098 (1470)
T PLN03140 1019 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQ 1098 (1470)
T ss_pred CcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCE
Confidence 799999999999999643 2233322 58999999999984 578999999986 89
Q ss_pred EEEecCHHH
Q 000746 817 IKEEGSFEE 825 (1303)
Q Consensus 817 i~~~g~~~~ 825 (1303)
++..|+..+
T Consensus 1099 ~v~~G~~~~ 1107 (1470)
T PLN03140 1099 VIYSGPLGR 1107 (1470)
T ss_pred EEEECCccc
Confidence 999998754
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.1e-20 Score=194.20 Aligned_cols=124 Identities=30% Similarity=0.455 Sum_probs=91.0
Q ss_pred CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcC--------eEEEEccCcccccccHHHHHcc
Q 000746 654 SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRG--------TVAYVPQISWIFNATLRKNILF 725 (1303)
Q Consensus 654 ~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~--------~iayv~Q~p~l~~~TireNI~~ 725 (1303)
.++|+|+||++++|++++|+||||||||||++++++ .+|. +.+.+ .++|++|
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~~G~-v~~~~~~~~~~~~~~~~~~q--------------- 67 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----ASGK-ARLISFLPKFSRNKLIFIDQ--------------- 67 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----cCCc-EEECCcccccccccEEEEhH---------------
Confidence 368999999999999999999999999999999974 3553 32222 2455554
Q ss_pred CCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHHH--H--------------------
Q 000746 726 GSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFNS--C-------------------- 783 (1303)
Q Consensus 726 g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~~--~-------------------- 783 (1303)
.++++..++ +.. ....+..+||||||||++||||++.+ .
T Consensus 68 ---------~~~l~~~~L---------~~~-~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l 128 (176)
T cd03238 68 ---------LQFLIDVGL---------GYL-TLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQL 128 (176)
T ss_pred ---------HHHHHHcCC---------Ccc-ccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHH
Confidence 122322222 111 24566789999999999999997654 1
Q ss_pred ---HhHhc-CCCEEEEEecCCCcccccCEEEEEeCCE
Q 000746 784 ---IKEEL-RGKTRILVTNQLHFLPHVDRIILVSEGM 816 (1303)
Q Consensus 784 ---i~~~~-~~~TvilvtH~~~~l~~aD~ii~l~~G~ 816 (1303)
+++.. .++|+|+|||+++.+..||++++|++|+
T Consensus 129 ~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~ 165 (176)
T cd03238 129 LEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGS 165 (176)
T ss_pred HHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCC
Confidence 22322 5899999999999998999999997644
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-19 Score=187.64 Aligned_cols=118 Identities=38% Similarity=0.709 Sum_probs=97.7
Q ss_pred EEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcC-------------eEEEEc
Q 000746 643 IKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRG-------------TVAYVP 709 (1303)
Q Consensus 643 ~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~-------------~iayv~ 709 (1303)
++|+++.|++. ++++++|+++++|+.++|+|+||||||||+++|.|+++|.+| .+.+++ .++|++
T Consensus 2 ~~~~~~~~~~~-~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G-~i~~~~~~~~~~~~~~~~~~i~~~~ 79 (157)
T cd00267 2 IENLSFRYGGR-TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSG-EILIDGKDIAKLPLEELRRRIGYVP 79 (157)
T ss_pred eEEEEEEeCCe-eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcc-EEEECCEEcccCCHHHHHhceEEEe
Confidence 68899999754 699999999999999999999999999999999999999876 444433 356666
Q ss_pred cCcccccccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH--------
Q 000746 710 QISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN-------- 781 (1303)
Q Consensus 710 Q~p~l~~~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~-------- 781 (1303)
| ||||||||++||||+..
T Consensus 80 q------------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ilD 105 (157)
T cd00267 80 Q------------------------------------------------------LSGGQRQRVALARALLLNPDLLLLD 105 (157)
T ss_pred e------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 5 99999999999999542
Q ss_pred ---------------HHHhHhc-CCCEEEEEecCCCcccc-cCEEEEEeCCE
Q 000746 782 ---------------SCIKEEL-RGKTRILVTNQLHFLPH-VDRIILVSEGM 816 (1303)
Q Consensus 782 ---------------~~i~~~~-~~~TvilvtH~~~~l~~-aD~ii~l~~G~ 816 (1303)
+.+.+.. +++|++++||+++.++. +|+++++++|+
T Consensus 106 Ep~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 106 EPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 2333332 35899999999999887 59999999874
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-19 Score=188.82 Aligned_cols=181 Identities=23% Similarity=0.415 Sum_probs=145.1
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcC---------eEEEEcc
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRG---------TVAYVPQ 710 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~---------~iayv~Q 710 (1303)
.+++++++.+|++ ..+++|+||++++|++.+++|+||+||||.+++|+|+++|++| .+.+++ +|||.|.
T Consensus 2 ~L~ie~vtK~Fg~-k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G-~I~~~g~~~~~~~~~rIGyLPE 79 (300)
T COG4152 2 ALEIEGVTKSFGD-KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEG-EITWNGGPLSQEIKNRIGYLPE 79 (300)
T ss_pred ceEEecchhccCc-eeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCc-eEEEcCcchhhhhhhhcccChh
Confidence 4789999999975 4699999999999999999999999999999999999999997 455554 8999999
Q ss_pred Ccccc-cccHHHHHccCCC---CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHH------
Q 000746 711 ISWIF-NATLRKNILFGSE---FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF------ 780 (1303)
Q Consensus 711 ~p~l~-~~TireNI~~g~~---~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~------ 780 (1303)
+--|+ ..|+.|-+.|-.. ++.++.++- +...++.+.-... -.++-..||-|.+|+|.+--|++
T Consensus 80 ERGLy~k~tv~dql~yla~LkGm~~~e~~~~-----~~~wLer~~i~~~--~~~kIk~LSKGnqQKIQfisaviHePeLl 152 (300)
T COG4152 80 ERGLYPKMTVEDQLKYLAELKGMPKAEIQKK-----LQAWLERLEIVGK--KTKKIKELSKGNQQKIQFISAVIHEPELL 152 (300)
T ss_pred hhccCccCcHHHHHHHHHHhcCCcHHHHHHH-----HHHHHHhcccccc--ccchHHHhhhhhhHHHHHHHHHhcCCCEE
Confidence 99988 6799999997532 445444432 3345555542221 13455689999999999999953
Q ss_pred -----------------HHHHhHh-cCCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHhc
Q 000746 781 -----------------NSCIKEE-LRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 781 -----------------~~~i~~~-~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
++.+.+. -+|+|+|+.||+++.+. .||+++.|++|+.+-+|+.++..+.
T Consensus 153 ILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~ 220 (300)
T COG4152 153 ILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRS 220 (300)
T ss_pred EecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHh
Confidence 3334333 37999999999999986 4999999999999999999988764
|
|
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.8e-20 Score=184.67 Aligned_cols=178 Identities=20% Similarity=0.334 Sum_probs=140.2
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc---------------C
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR---------------G 703 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~---------------~ 703 (1303)
..++++|++.++++- .+|+|+||++.+||+-+|+||||+||||++.+|.|-.+|++|... .+ .
T Consensus 4 ~iL~~~~vsVsF~GF-~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~-f~g~~dl~~~~e~~IAr~ 81 (249)
T COG4674 4 IILYLDGVSVSFGGF-KALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVL-FDGDTDLTKLPEHRIARA 81 (249)
T ss_pred ceEEEeceEEEEcce-eeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEE-EcCchhhccCCHHHHHHh
Confidence 357899999999754 589999999999999999999999999999999999999987543 32 2
Q ss_pred eEEEEccCcccc-cccHHHHHccCCCCCh---------------hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCch
Q 000746 704 TVAYVPQISWIF-NATLRKNILFGSEFDP---------------AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISG 767 (1303)
Q Consensus 704 ~iayv~Q~p~l~-~~TireNI~~g~~~~~---------------~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSG 767 (1303)
.|+-=+|.|.+| +-||+||+-.....++ +++++++...+|.+. ......+||.
T Consensus 82 GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~-----------~~~~A~~LSH 150 (249)
T COG4674 82 GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDE-----------RDRLAALLSH 150 (249)
T ss_pred ccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchh-----------hhhhhhhhcc
Confidence 488889999999 5699999976533221 234444444443321 2233467999
Q ss_pred HHHHHHHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCH
Q 000746 768 GQKQRVSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSF 823 (1303)
Q Consensus 768 GQkQRiaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~ 823 (1303)
||||++-|+--+.+ +.++...+++++++|-|++.+++ .||+|-||.+|++..+|+.
T Consensus 151 GqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsl 230 (249)
T COG4674 151 GQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSL 230 (249)
T ss_pred chhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecccH
Confidence 99999999977432 34555667899999999999986 4999999999999999999
Q ss_pred HHHHhc
Q 000746 824 EELSKH 829 (1303)
Q Consensus 824 ~~l~~~ 829 (1303)
+++.++
T Consensus 231 d~v~~d 236 (249)
T COG4674 231 DEVQND 236 (249)
T ss_pred HHhhcC
Confidence 988654
|
|
| >PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.1e-17 Score=185.59 Aligned_cols=264 Identities=17% Similarity=0.232 Sum_probs=196.8
Q ss_pred HHHHHHHHHhhhhHHHhhhcccccCCCCC--chHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000746 928 CYLSTEVLRISSSTWLSFWTDQSTSKNYN--PGFYIAI--YTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILR 1003 (1303)
Q Consensus 928 ~~~~~~~~~~~~~~~l~~w~~~~~~~~~~--~~~~~~i--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~ 1003 (1303)
+.++..+.....|+.++.+.|........ ...+... ++++.++...+.....+...+.+.+...++|+++++|+++
T Consensus 7 ~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 86 (275)
T PF00664_consen 7 LSILSGLLSLLFPLLLGQIIDSLSSGNSDNNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKRLFEKLLR 86 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556677777777753322222 1112211 2222233333444444556788999999999999999999
Q ss_pred CcccccccCCcchhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 1004 APMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLILFYAAYLYYQSTAR 1083 (1303)
Q Consensus 1004 ~p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~~~~~~~~~~i~~~v~i~~~~~~~~~~~~pl~~~~~~i~~~~~~~~r 1083 (1303)
.|.+||+++++|+++||+++|++.+++.+...+..++..+...++.++++...+|.+.++.+...+++.++..++.+..+
T Consensus 87 ~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~ 166 (275)
T PF00664_consen 87 LPYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFISWKLALILLIILPLLFLISFIFSKKIR 166 (275)
T ss_dssp SHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhcccccccccccccccccccccccccccccccchhhhhhhcccccccccccccchhhhhhHhhhhhhccccc
Confidence 99999999999999999999999999999988888888888888888888888998888888777777778888888888
Q ss_pred HHHHHhhhccchHHHHHHHHhcChhhHhhcCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 1084 EVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGIMIWLIATFA 1163 (1303)
Q Consensus 1084 ~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~ 1163 (1303)
+..+...+..++..+.+.|.++|+++||+|+.|+++.+++.+..++..+........+.+.....+.+..+....+..++
T Consensus 167 ~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 246 (275)
T PF00664_consen 167 KLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYLSIVLILIFG 246 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888899999999999999999999999999999999999988888888877788888777776665444433333
Q ss_pred HHccCcccccccchhHHHHHHHHHHHHHHH
Q 000746 1164 VMQNGRAENQVAFASTMGLLLSYTLNITNL 1193 (1303)
Q Consensus 1164 v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~ 1193 (1303)
... ....+....|.+..++.+...+.+|
T Consensus 247 ~~~--~~~~g~~s~g~~~~~~~~~~~~~~p 274 (275)
T PF00664_consen 247 AYL--SVINGQISIGTLVAFLSLSSQLINP 274 (275)
T ss_dssp HHH---HCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred HHH--HHHcCCcCHHHHHHHHHHHHHHHhh
Confidence 332 0112234467777777777666655
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.9e-20 Score=226.31 Aligned_cols=158 Identities=24% Similarity=0.295 Sum_probs=118.5
Q ss_pred EeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceE----------EEc-----------
Q 000746 644 KNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASV----------VIR----------- 702 (1303)
Q Consensus 644 ~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~----------~~~----------- 702 (1303)
++++.+|+.+..+|++++ .+++|++++|+||||||||||+++|+|+++|++|... .++
T Consensus 77 ~~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~ 155 (590)
T PRK13409 77 EEPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKL 155 (590)
T ss_pred cCceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHH
Confidence 358899976557999999 9999999999999999999999999999999988642 011
Q ss_pred ----Ce----EEEEccCcccccccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHH
Q 000746 703 ----GT----VAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVS 774 (1303)
Q Consensus 703 ----~~----iayv~Q~p~l~~~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRia 774 (1303)
.. +.|++|.|.++.+|++||+.... ..++..++++..++.+. ....-.+||||||||++
T Consensus 156 ~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~--~~~~~~~~l~~l~l~~~-----------~~~~~~~LSgGe~qrv~ 222 (590)
T PRK13409 156 YNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVD--ERGKLDEVVERLGLENI-----------LDRDISELSGGELQRVA 222 (590)
T ss_pred hccCcceeecccchhhhhhhhcchHHHHHHhhh--HHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHHHHH
Confidence 12 34556677888899999997421 12345555555554322 12334579999999999
Q ss_pred HHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCcccc-cCEEEEEeCC
Q 000746 775 MARAVFN-----------------------SCIKEELRGKTRILVTNQLHFLPH-VDRIILVSEG 815 (1303)
Q Consensus 775 LARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l~~-aD~ii~l~~G 815 (1303)
||||+.. +.+++..+++|+|+|||+++.+.. +|+|++|++|
T Consensus 223 ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 223 IAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 9999642 234443348999999999998754 8999999763
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-18 Score=210.53 Aligned_cols=180 Identities=24% Similarity=0.357 Sum_probs=140.8
Q ss_pred CCCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcC--eEEEEccCc-c
Q 000746 637 ELPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRG--TVAYVPQIS-W 713 (1303)
Q Consensus 637 ~~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~--~iayv~Q~p-~ 713 (1303)
....++++|++++|+++.++++++||.|.+|++++|+||||+|||||++.|+|...|.+|. +.+.. ++||.+|+- .
T Consensus 318 g~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~-v~~g~~v~igyf~Q~~~~ 396 (530)
T COG0488 318 GKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGT-VKVGETVKIGYFDQHRDE 396 (530)
T ss_pred CCeeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCce-EEeCCceEEEEEEehhhh
Confidence 3457899999999977678999999999999999999999999999999999999999874 44443 599999987 3
Q ss_pred c-ccccHHHHHccCCC-CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH----------
Q 000746 714 I-FNATLRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN---------- 781 (1303)
Q Consensus 714 l-~~~TireNI~~g~~-~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~---------- 781 (1303)
+ -+.|+-|++.-+.+ ..+..+...+....+..+-. ......||||||.|+.||+.++.
T Consensus 397 l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~----------~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEP 466 (530)
T COG0488 397 LDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQ----------EKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEP 466 (530)
T ss_pred cCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHH----------hCchhhcCHhHHHHHHHHHHhccCCCEEEEcCC
Confidence 3 45699999986553 33566666666655543321 23445799999999999999542
Q ss_pred ---------HHHhHhcC--CCEEEEEecCCCcccc-cCEEEEEeCCEEEEe-cCHHHHHh
Q 000746 782 ---------SCIKEELR--GKTRILVTNQLHFLPH-VDRIILVSEGMIKEE-GSFEELSK 828 (1303)
Q Consensus 782 ---------~~i~~~~~--~~TvilvtH~~~~l~~-aD~ii~l~~G~i~~~-g~~~~l~~ 828 (1303)
+++.+.+. .-|+|+|||+.+++.. |++|+.+++ ++... |+|++..+
T Consensus 467 TNhLDi~s~~aLe~aL~~f~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~ 525 (530)
T COG0488 467 TNHLDIESLEALEEALLDFEGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLE 525 (530)
T ss_pred CccCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHH
Confidence 23444442 5699999999999976 899999998 77666 88887654
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.2e-19 Score=195.74 Aligned_cols=183 Identities=26% Similarity=0.422 Sum_probs=131.9
Q ss_pred CcEEEEeeEEEeCCC---CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCC-----CCceEE----------
Q 000746 639 PAVSIKNGNFSWDSK---SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPL-----KDASVV---------- 700 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~---~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~-----~g~~~~---------- 700 (1303)
+.++++|++..|... ..++++|||+|++||.+++||.||||||--.++++|+++.. +| .+.
T Consensus 5 ~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg-~i~f~G~dll~~s 83 (534)
T COG4172 5 PLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSG-SILFDGEDLLAAS 83 (534)
T ss_pred cceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccc-eeEEcChhhhcCC
Confidence 457899999888532 26899999999999999999999999999999999999741 22 222
Q ss_pred ------Ec-CeEEEEccCccc-cc--ccH----HHHHccCCCCC----hhhHHHHHHHHhhHHHhhcCCCCCCccccCCC
Q 000746 701 ------IR-GTVAYVPQISWI-FN--ATL----RKNILFGSEFD----PAKYWKTVDVSALQHDLDLLPDRDLTEIGERG 762 (1303)
Q Consensus 701 ------~~-~~iayv~Q~p~l-~~--~Ti----reNI~~g~~~~----~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G 762 (1303)
+| ++|+.++|+|.- .| -|| .|-|...+..+ +++..+.++.+++.+- .-.+..-.
T Consensus 84 e~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p--------~~rl~~yP 155 (534)
T COG4172 84 ERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEP--------EKRLDAYP 155 (534)
T ss_pred HHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCch--------hhhhhhCC
Confidence 22 379999999963 22 244 44444444333 2333344444443221 11234456
Q ss_pred CCCchHHHHHHHHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCE
Q 000746 763 VNISGGQKQRVSMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGM 816 (1303)
Q Consensus 763 ~~LSGGQkQRiaLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~ 816 (1303)
..|||||||||-||-|+.. +.+++.. .|..+++|||++..++ .||+|.||.+|+
T Consensus 156 HeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ 235 (534)
T COG4172 156 HELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGE 235 (534)
T ss_pred cccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccE
Confidence 7899999999999999532 1122221 4899999999999986 499999999999
Q ss_pred EEEecCHHHHHhcc
Q 000746 817 IKEEGSFEELSKHG 830 (1303)
Q Consensus 817 i~~~g~~~~l~~~~ 830 (1303)
++|+|+.+++..++
T Consensus 236 ivE~~~t~~lF~~P 249 (534)
T COG4172 236 IVETGTTETLFAAP 249 (534)
T ss_pred EeecCcHHHHhhCC
Confidence 99999999998654
|
|
| >PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.7e-16 Score=177.86 Aligned_cols=268 Identities=25% Similarity=0.298 Sum_probs=193.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 330 WLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPA--WIGYIYAFLIFVGVSFGVLTEAQYFQNVWRVGFRLRSTLVAAIF 407 (1303)
Q Consensus 330 ~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~L~~~i~ 407 (1303)
+.+.++.++..++.++.|++++.+++.+.++... ...+.+++++++...+.......+.+...+.+.+++..++..++
T Consensus 2 ~l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (275)
T PF00664_consen 2 FLAILLSILSGLLSLLFPLLLGQIIDSLSSGNSDNNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKRLF 81 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888888899999999999997665432 22333333322222222233333333356888999999999999
Q ss_pred HHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 408 RKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQ-LHGLWSAPFRITLSMVLLYQQLGVASLLGSLMLVLMVPLQTFI 486 (1303)
Q Consensus 408 ~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~-~~~~~~~~~~i~~~~~~l~~~lg~~~l~~~~~~~~~~~~~~~~ 486 (1303)
+|.++.+....++.++|+++|++++|++.+++.... +..+......++.++.+++..-+..+++.+++.++..++...+
T Consensus 82 ~~~~~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~ 161 (275)
T PF00664_consen 82 EKLLRLPYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFISWKLALILLIILPLLFLISFIF 161 (275)
T ss_dssp HHHHHSHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhcccccccccccccccccccccccccccccccchhhhhhhcccccccccccccchhhhhhHhhhhhh
Confidence 999999999888899999999999999999987654 3444444444444444444333333344444445555666778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--HhH
Q 000746 487 ISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSIPV--VVT 564 (1303)
Q Consensus 487 ~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~--~~~ 564 (1303)
.++.++..++..+..+++.+.+.|.++|+++||.|++|+.+.+++++..++..+...+......+.......... .+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (275)
T PF00664_consen 162 SKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYLSIVL 241 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999999999999999999998888777666665555554444333322 244
Q ss_pred Hhhhhhhh-hhCCCCCHHHHHHHHHHHHHHHHHH
Q 000746 565 VVSFGTFT-LLGGDLTPARAFTSLSLFAVLRFPL 597 (1303)
Q Consensus 565 ~~~f~~~~-~~~~~l~~~~~f~~l~l~~~l~~pl 597 (1303)
++.+|++. ...|.+++|.+++.+.++..+..|+
T Consensus 242 ~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~pl 275 (275)
T PF00664_consen 242 ILIFGAYLSVINGQISIGTLVAFLSLSSQLINPL 275 (275)
T ss_dssp HHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhhC
Confidence 56677887 7889999999999999999998885
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A. |
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.6e-20 Score=186.51 Aligned_cols=111 Identities=38% Similarity=0.636 Sum_probs=94.5
Q ss_pred cceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE-------------cCeEEEEccCcccccc-cHHHH
Q 000746 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI-------------RGTVAYVPQISWIFNA-TLRKN 722 (1303)
Q Consensus 657 L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~-------------~~~iayv~Q~p~l~~~-TireN 722 (1303)
|+|+|+++++|++++|+|+||||||||+++|.|.++|.+|. +.+ +..++|++|++.++++ |++||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~-i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~ 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGS-ILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEE-EEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccc-cccccccccccccccccccccccccccccccccccccc
Confidence 68999999999999999999999999999999999998864 433 3469999999999976 59999
Q ss_pred HccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH
Q 000746 723 ILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN 781 (1303)
Q Consensus 723 I~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~ 781 (1303)
.++++++++++.+++.+ ..++.++.+...||||||||++||||++.
T Consensus 80 ------~~~~~~~~~l~~l~~~~-------~~~~~~~~~~~~LS~Ge~~rl~la~al~~ 125 (137)
T PF00005_consen 80 ------ESDERIEEVLKKLGLED-------LLDRKIGQRASSLSGGEKQRLALARALLK 125 (137)
T ss_dssp ------HHHHHHHHHHHHTTHGG-------GTGSBGTSCGGGSCHHHHHHHHHHHHHHT
T ss_pred ------ccccccccccccccccc-------ccccccccccchhhHHHHHHHHHHHHHHc
Confidence 34567777777776654 34577888889999999999999999875
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.1e-18 Score=178.86 Aligned_cols=179 Identities=19% Similarity=0.283 Sum_probs=132.3
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcC--CCCCCCceEE-------------EcCe
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGE--LPPLKDASVV-------------IRGT 704 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~--~~~~~g~~~~-------------~~~~ 704 (1303)
.++++|+..+-++++.+|+++||+|++||+.+|.||||||||||.++|+|. |++++|.+.. .+..
T Consensus 3 ~L~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~G 82 (251)
T COG0396 3 MLEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAG 82 (251)
T ss_pred eeEEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcC
Confidence 478999998887545799999999999999999999999999999999996 4667764321 1345
Q ss_pred EEEEccCcccccc-cHHHHHccCC----CC---C---hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHH
Q 000746 705 VAYVPQISWIFNA-TLRKNILFGS----EF---D---PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRV 773 (1303)
Q Consensus 705 iayv~Q~p~l~~~-TireNI~~g~----~~---~---~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRi 773 (1303)
|....|.|.=+.| |+.+-+.-+. .. . .++.++.++..++++++ .+..|+ ..+|||+|.|.
T Consensus 83 ifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~------l~R~vN---~GFSGGEkKR~ 153 (251)
T COG0396 83 IFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEF------LERYVN---EGFSGGEKKRN 153 (251)
T ss_pred CEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHH------hhcccC---CCcCcchHHHH
Confidence 8999999987776 8888776431 11 1 23334444444444422 122232 34999999999
Q ss_pred HHHHHHH-----------------------HHHHhHhc-CCCEEEEEecCCCccccc--CEEEEEeCCEEEEecCHHHHH
Q 000746 774 SMARAVF-----------------------NSCIKEEL-RGKTRILVTNQLHFLPHV--DRIILVSEGMIKEEGSFEELS 827 (1303)
Q Consensus 774 aLARAl~-----------------------~~~i~~~~-~~~TvilvtH~~~~l~~a--D~ii~l~~G~i~~~g~~~~l~ 827 (1303)
-|+.+++ .+.++... +++++++|||.-..+.+. |++.+|-+|+|+..|.+ ++.
T Consensus 154 EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-el~ 232 (251)
T COG0396 154 EILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-ELA 232 (251)
T ss_pred HHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-HHH
Confidence 9999843 12233333 589999999999888775 99999999999999999 665
Q ss_pred h
Q 000746 828 K 828 (1303)
Q Consensus 828 ~ 828 (1303)
+
T Consensus 233 ~ 233 (251)
T COG0396 233 E 233 (251)
T ss_pred H
Confidence 3
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.9e-18 Score=169.44 Aligned_cols=183 Identities=23% Similarity=0.416 Sum_probs=132.3
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------------
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------------ 700 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------------ 700 (1303)
+.+++++++..|.+. .--+|+||++.|||..+|||+||||||||+++|.+-+.|+.|.+..
T Consensus 5 PLL~V~~lsk~Yg~~-~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeR 83 (258)
T COG4107 5 PLLSVSGLSKLYGPG-KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAER 83 (258)
T ss_pred cceeehhhhhhhCCC-cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHH
Confidence 467899999999765 4679999999999999999999999999999999999999985432
Q ss_pred ---EcCeEEEEccCcc--c-ccc----cHHHHHc-cCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHH
Q 000746 701 ---IRGTVAYVPQISW--I-FNA----TLRKNIL-FGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQ 769 (1303)
Q Consensus 701 ---~~~~iayv~Q~p~--l-~~~----TireNI~-~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQ 769 (1303)
.|-.-++|-|+|- | +.- .|-|-+. -| ...|-+ +++.+ .++++..+ =+.+.+.+....+|||.
T Consensus 84 R~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G----~RHYG~-iR~~a-~~WL~~VE-I~~~RiDD~PrtFSGGM 156 (258)
T COG4107 84 RRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIG----ARHYGN-IRAEA-QDWLEEVE-IDLDRIDDLPRTFSGGM 156 (258)
T ss_pred HHHhhhccceeecCccccceeeeccCCccchhHHhhh----hhhhhh-HHHHH-HHHHHhcc-cCcccccCcccccchHH
Confidence 1234799999984 1 111 2222221 11 111221 22222 23333332 24566778889999999
Q ss_pred HHHHHHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCcccc-cCEEEEEeCCEEEEecCH
Q 000746 770 KQRVSMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLPH-VDRIILVSEGMIKEEGSF 823 (1303)
Q Consensus 770 kQRiaLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~~-aD~ii~l~~G~i~~~g~~ 823 (1303)
+||+.|||-++. +++++.. -+-.+++|||++...+. +|+.++|++|+++|+|-.
T Consensus 157 qQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~GLT 236 (258)
T COG4107 157 QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLT 236 (258)
T ss_pred HHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEeccccc
Confidence 999999999531 2333332 26799999999998775 899999999999999988
Q ss_pred HHHHhc
Q 000746 824 EELSKH 829 (1303)
Q Consensus 824 ~~l~~~ 829 (1303)
+..+..
T Consensus 237 DrvLDD 242 (258)
T COG4107 237 DRVLDD 242 (258)
T ss_pred cccccC
Confidence 877654
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.9e-18 Score=209.28 Aligned_cols=181 Identities=28% Similarity=0.418 Sum_probs=140.5
Q ss_pred cEEEEeeEEEeCCC----CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCC---CCCceEEEc----------
Q 000746 640 AVSIKNGNFSWDSK----SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP---LKDASVVIR---------- 702 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~----~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~---~~g~~~~~~---------- 702 (1303)
.++++|++..-+.+ +.+|+|||.++++||+.||.||||||||||+++|+|-.+. .+ |.+.++
T Consensus 25 ~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~-G~ilvNG~~~~~~~~~ 103 (613)
T KOG0061|consen 25 KLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLS-GEILLNGRPRDSRSFR 103 (613)
T ss_pred eeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcce-EEEEECCccCchhhhh
Confidence 57888888876543 4799999999999999999999999999999999999874 33 355544
Q ss_pred CeEEEEccCcccc-cccHHHHHccCCC------CCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCC-CCCchHHH
Q 000746 703 GTVAYVPQISWIF-NATLRKNILFGSE------FDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERG-VNISGGQK 770 (1303)
Q Consensus 703 ~~iayv~Q~p~l~-~~TireNI~~g~~------~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G-~~LSGGQk 770 (1303)
+..|||+||..++ +.||+|++.|... .+. ++++++++.-+|. +-.||.||..+ ..+|||||
T Consensus 104 ~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~-------~~~~t~ig~~~~rgiSGGEr 176 (613)
T KOG0061|consen 104 KISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLE-------KCADTLIGNPGIRGLSGGER 176 (613)
T ss_pred heeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCh-------hhccceecCCCCCccccchh
Confidence 4699999999877 6799999987532 232 2344444444443 33578887544 57999999
Q ss_pred HHHHHHHHHHHH-----------------------HHhHh-cCCCEEEEEecCCCc--ccccCEEEEEeCCEEEEecCHH
Q 000746 771 QRVSMARAVFNS-----------------------CIKEE-LRGKTRILVTNQLHF--LPHVDRIILVSEGMIKEEGSFE 824 (1303)
Q Consensus 771 QRiaLARAl~~~-----------------------~i~~~-~~~~TvilvtH~~~~--l~~aD~ii~l~~G~i~~~g~~~ 824 (1303)
+|+++|--++.+ .+++. .+|||||+.=|+++. ....|++++|.+|+++.+|+++
T Consensus 177 kRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~ 256 (613)
T KOG0061|consen 177 KRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPR 256 (613)
T ss_pred hHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHH
Confidence 999999986431 23332 269999999999986 6789999999999999999998
Q ss_pred HHHh
Q 000746 825 ELSK 828 (1303)
Q Consensus 825 ~l~~ 828 (1303)
++.+
T Consensus 257 ~~~~ 260 (613)
T KOG0061|consen 257 ELLE 260 (613)
T ss_pred HHHH
Confidence 8753
|
|
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.9e-18 Score=172.16 Aligned_cols=153 Identities=23% Similarity=0.326 Sum_probs=115.5
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc-----------CeEEEEc
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR-----------GTVAYVP 709 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~-----------~~iayv~ 709 (1303)
++.+|++...+. ..++.++||++.+||.+.|.|||||||||||++|.|+++|.+|.+.+-. ..+-|..
T Consensus 3 L~a~~L~~~R~e-~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLG 81 (209)
T COG4133 3 LEAENLSCERGE-RTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLG 81 (209)
T ss_pred chhhhhhhccCc-ceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhh
Confidence 345666666543 3789999999999999999999999999999999999999998544321 2355666
Q ss_pred cCcccc-cccHHHHHccCCC----CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHH----
Q 000746 710 QISWIF-NATLRKNILFGSE----FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF---- 780 (1303)
Q Consensus 710 Q~p~l~-~~TireNI~~g~~----~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~---- 780 (1303)
.+|-+= .-|+.||+.|.++ -+++..+++++..+|. +++.+|- .+||-|||.|+||||-++
T Consensus 82 H~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~-g~~dlp~----------~~LSAGQqRRvAlArL~ls~~p 150 (209)
T COG4133 82 HQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLA-GLEDLPV----------GQLSAGQQRRVALARLWLSPAP 150 (209)
T ss_pred ccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcc-cccccch----------hhcchhHHHHHHHHHHHcCCCC
Confidence 666665 5699999998765 3467889999998885 4444553 359999999999999832
Q ss_pred -------------------HHHHhHh-cCCCEEEEEecCCCcccc
Q 000746 781 -------------------NSCIKEE-LRGKTRILVTNQLHFLPH 805 (1303)
Q Consensus 781 -------------------~~~i~~~-~~~~TvilvtH~~~~l~~ 805 (1303)
...+... -+|-.||+.||+.-.+..
T Consensus 151 LWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~~ 195 (209)
T COG4133 151 LWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIAS 195 (209)
T ss_pred ceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCCc
Confidence 2222222 368899999999866543
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.2e-18 Score=185.55 Aligned_cols=159 Identities=24% Similarity=0.283 Sum_probs=94.7
Q ss_pred CCCccceeeeEecCCcEEEEEcCCCCChHHHH-HHHhc--------------------CCCCCCCceEEEcC-eEEEEcc
Q 000746 653 KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLV-SAMLG--------------------ELPPLKDASVVIRG-TVAYVPQ 710 (1303)
Q Consensus 653 ~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl-~~llg--------------------~~~~~~g~~~~~~~-~iayv~Q 710 (1303)
+.++|+|+||+|++||+++|+|+||||||||+ ..+.. .+.|..+ ..++ ..++..|
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 83 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVD---SIEGLSPAIAID 83 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCccccc---cccCCCceEEec
Confidence 34799999999999999999999999999996 22221 0011100 0111 2333444
Q ss_pred Ccc-ccc--cc---HHHHHccCC-CCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHHH-
Q 000746 711 ISW-IFN--AT---LRKNILFGS-EFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFNS- 782 (1303)
Q Consensus 711 ~p~-l~~--~T---ireNI~~g~-~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~~- 782 (1303)
++. ..+ .+ +.+...+.. -+..+...+. .+.++.+.-.+ ........+||||||||++||||+..+
T Consensus 84 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~~l~~-~~~~~~~~~LSgG~~qrv~laral~~~p 156 (226)
T cd03270 84 QKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRER------LGFLVDVGLGY-LTLSRSAPTLSGGEAQRIRLATQIGSGL 156 (226)
T ss_pred CCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHH------HHHHHHCCCCc-ccccCccCcCCHHHHHHHHHHHHHHhCC
Confidence 432 111 12 222211100 0111111111 11122221111 124556778999999999999997532
Q ss_pred ------------------------HHhHh-cCCCEEEEEecCCCcccccCEEEEE------eCCEEEEec
Q 000746 783 ------------------------CIKEE-LRGKTRILVTNQLHFLPHVDRIILV------SEGMIKEEG 821 (1303)
Q Consensus 783 ------------------------~i~~~-~~~~TvilvtH~~~~l~~aD~ii~l------~~G~i~~~g 821 (1303)
.+.+. .++.|+|+|||+++.+..||++++| ++|+|+++|
T Consensus 157 ~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 157 TGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 12222 2578999999999998899999999 999999986
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.8e-15 Score=176.00 Aligned_cols=360 Identities=14% Similarity=0.145 Sum_probs=207.3
Q ss_pred HHhhhhHHHhhhcccccC---CCCCchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccc
Q 000746 935 LRISSSTWLSFWTDQSTS---KNYNPGF--YIAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILRAPMLFF 1009 (1303)
Q Consensus 935 ~~~~~~~~l~~w~~~~~~---~~~~~~~--~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~fF 1009 (1303)
+......|+..|..+..+ ......+ -+.+|..++.+.......+.|+......+.-.-|-+.+.++-+.-. .||
T Consensus 58 ~~v~~~v~~~~w~~~~~~aL~~~d~~~f~~~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~-~~y 136 (604)
T COG4178 58 LSVRGQVLLNDWNGPFYNALARRDLAAFWQQLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPR-RYY 136 (604)
T ss_pred HHhheeeeeHhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chH
Confidence 334455666666543211 0011122 2456666666666666666777667777777777777777777766 555
Q ss_pred ccCCcchh------HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHH
Q 000746 1010 HTNPIGRV------INRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIV---------------STISLWAIMPLL 1068 (1303)
Q Consensus 1010 d~~~~G~i------lnR~s~D~~~vd~~l~~~~~~~~~~~~~~i~~~v~i~~~---------------~~~~~~~~~pl~ 1068 (1303)
.-...|.+ =.|+.+|+...-+........++..+++++...+++.-. ..++.++++...
T Consensus 137 ~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya 216 (604)
T COG4178 137 RLAQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYA 216 (604)
T ss_pred HHHhcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHH
Confidence 54444422 268889987766554455555555555544433333211 122223322222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHhcChhhHhhcCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 000746 1069 ILFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRL 1148 (1303)
Q Consensus 1069 ~~~~~i~~~~~~~~r~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l 1148 (1303)
+...++...+.|....+.-......+.......-.-++...|-.|+-|+.+.++..+..+...+........+.+++...
T Consensus 217 ~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~ 296 (604)
T COG4178 217 ISASLLTHLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQ 296 (604)
T ss_pred HHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 22222222333332222222222223333344445556677888888887777776666555444333333333333322
Q ss_pred HHHHHHHH--HHHHHHHHHccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcC------
Q 000746 1149 ETLGGIMI--WLIATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDL------ 1220 (1303)
Q Consensus 1149 ~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~------ 1220 (1303)
...+-+.+ -+....-.+.. +....|.+........++...+++++..+..+.+-.+.+.|+.++.+.
T Consensus 297 ~gy~~~s~v~P~li~ap~~f~-----g~i~~G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~ 371 (604)
T COG4178 297 LGYGWLSVVLPILIAAPRYFS-----GQITFGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQM 371 (604)
T ss_pred hhhhHHHHHHHHHhccHhhhc-----CcChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 22221111 11111111111 122345566666667788888999999999999999999999998632
Q ss_pred CCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCe
Q 000746 1221 PSEAPGMVESNRPPPAWPSSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300 (1303)
Q Consensus 1221 ~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~ 1300 (1303)
+++.+.... ..-...-..+..|+|+|++..-+++. +.|+++||+|+|||.+=|.|+||||||||+++|.++++--+|+
T Consensus 372 ~~~~~~~~~-~~~~~~~~~~~~i~~~nl~l~~p~~~-~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~ 449 (604)
T COG4178 372 DTEKPARTG-RRIDFDDNADHGITLENLSLRTPDGQ-TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGR 449 (604)
T ss_pred cccccCccc-ccccccccccceeEEeeeeEECCCCC-eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCc
Confidence 222211100 00000000147899999999987654 7999999999999999999999999999999999999999998
Q ss_pred ee
Q 000746 1301 NI 1302 (1303)
Q Consensus 1301 I~ 1302 (1303)
|.
T Consensus 450 I~ 451 (604)
T COG4178 450 IS 451 (604)
T ss_pred ee
Confidence 74
|
|
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.6e-17 Score=182.51 Aligned_cols=159 Identities=23% Similarity=0.376 Sum_probs=103.0
Q ss_pred CccceeeeEecCCcEEEEEcCCCCChHHHHHHHh--------cCC--CCCCCceEE---EcCeEEEEccCc---------
Q 000746 655 PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAML--------GEL--PPLKDASVV---IRGTVAYVPQIS--------- 712 (1303)
Q Consensus 655 ~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~ll--------g~~--~~~~g~~~~---~~~~iayv~Q~p--------- 712 (1303)
.-|+|+|++||.|.+++|+|+||||||||++-++ +.. .|..+..+. .-..+-+|.|.|
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 4699999999999999999999999999998663 110 121111110 012244445544
Q ss_pred -------------------------------------c-cccccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCC
Q 000746 713 -------------------------------------W-IFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRD 754 (1303)
Q Consensus 713 -------------------------------------~-l~~~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~ 754 (1303)
. +.+.|+.||+.|.....+ ..++ .+.++.+ |+
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~--~~~~------~~~L~~v--gL 158 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPK--IARK------LQTLCDV--GL 158 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhh--HHHH------HHHHHHc--CC
Confidence 2 223455555444322110 0111 1112222 33
Q ss_pred Cc-cccCCCCCCchHHHHHHHHHHHHHHH--------------------------HHhHhc-CCCEEEEEecCCCccccc
Q 000746 755 LT-EIGERGVNISGGQKQRVSMARAVFNS--------------------------CIKEEL-RGKTRILVTNQLHFLPHV 806 (1303)
Q Consensus 755 ~T-~ige~G~~LSGGQkQRiaLARAl~~~--------------------------~i~~~~-~~~TvilvtH~~~~l~~a 806 (1303)
.. ..+....+||||||||++||||+..+ .+.+.. ++.|+|+|||+++.+..|
T Consensus 159 ~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~a 238 (261)
T cd03271 159 GYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCA 238 (261)
T ss_pred chhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhC
Confidence 33 35777889999999999999997652 122222 489999999999999999
Q ss_pred CEEEEE------eCCEEEEecCH
Q 000746 807 DRIILV------SEGMIKEEGSF 823 (1303)
Q Consensus 807 D~ii~l------~~G~i~~~g~~ 823 (1303)
|+++.| ++|+|+++|++
T Consensus 239 D~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 239 DWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred CEEEEecCCcCCCCCEEEEeCCC
Confidence 999999 89999999974
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.2e-16 Score=195.24 Aligned_cols=172 Identities=25% Similarity=0.369 Sum_probs=127.4
Q ss_pred CccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCC--ceEE----------EcCeEEEEccCcccc-cccHHH
Q 000746 655 PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKD--ASVV----------IRGTVAYVPQISWIF-NATLRK 721 (1303)
Q Consensus 655 ~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g--~~~~----------~~~~iayv~Q~p~l~-~~Tire 721 (1303)
.+|+|++.-+++|+.+.+.||.|||||||++++.|..+.... +.+. .++.++|++|+..-+ ..||||
T Consensus 129 ~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVre 208 (1391)
T KOG0065|consen 129 QILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRE 208 (1391)
T ss_pred eeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEee
Confidence 589999999999999999999999999999999998764321 1122 246799999988766 679999
Q ss_pred HHccCC-------CCC---hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCC-CCchHHHHHHHHHHHHH----------
Q 000746 722 NILFGS-------EFD---PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGV-NISGGQKQRVSMARAVF---------- 780 (1303)
Q Consensus 722 NI~~g~-------~~~---~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~-~LSGGQkQRiaLARAl~---------- 780 (1303)
-+.|.. .+| ..++.+.. ....-.+-.|.+..||.||++.. ..|||||.||++|-++.
T Consensus 209 TldFa~rck~~~~r~~~~~R~e~~~~~--~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De 286 (1391)
T KOG0065|consen 209 TLDFAARCKGPGSRYDEVSRREKLAAM--TDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDE 286 (1391)
T ss_pred hhhHHHhccCCccccccccHHHHHHHH--HHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeec
Confidence 999853 133 22222111 11111123566788999998875 69999999999997731
Q ss_pred -------------HHHHhHh--cCCCEEEEEecCCCc--ccccCEEEEEeCCEEEEecCHHHHHh
Q 000746 781 -------------NSCIKEE--LRGKTRILVTNQLHF--LPHVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 781 -------------~~~i~~~--~~~~TvilvtH~~~~--l~~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
-++++.. .-+.|.++.-|+.+. ....|+|++|.+|+++.+|+.++.+.
T Consensus 287 ~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~ 351 (1391)
T KOG0065|consen 287 ITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLP 351 (1391)
T ss_pred ccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHH
Confidence 1334332 247888888888764 67899999999999999999998763
|
|
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.8e-18 Score=177.06 Aligned_cols=168 Identities=24% Similarity=0.400 Sum_probs=115.1
Q ss_pred CccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcC------------eEEEEc----cCcccc--c
Q 000746 655 PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRG------------TVAYVP----QISWIF--N 716 (1303)
Q Consensus 655 ~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~------------~iayv~----Q~p~l~--~ 716 (1303)
++.+||||+||+|++++.+|+||+||||++|+|.|.+.|++| .+.+.+ ++++|. |--|=. .
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G-~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ 116 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSG-KVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPAL 116 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCC-eEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhh
Confidence 578999999999999999999999999999999999999987 444433 233322 111211 1
Q ss_pred ccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH---------------
Q 000746 717 ATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN--------------- 781 (1303)
Q Consensus 717 ~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~--------------- 781 (1303)
.|++=|=.. .+.+++++.+-++ ...+.| +.+..+-..-..||=|||.|.-||-|+++
T Consensus 117 ds~~v~~~I-y~Ipd~~F~~r~~-----~l~eiL--dl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLD 188 (325)
T COG4586 117 DSLEVLKLI-YEIPDDEFAERLD-----FLTEIL--DLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLD 188 (325)
T ss_pred hhHHHHHHH-HhCCHHHHHHHHH-----HHHHHh--cchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcc
Confidence 122111111 1233444443322 222222 22334455667899999999999999643
Q ss_pred ----HHHhHhc------CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHhcch
Q 000746 782 ----SCIKEEL------RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSKHGR 831 (1303)
Q Consensus 782 ----~~i~~~~------~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~~~~ 831 (1303)
..+++.+ ++.||++.||.++-+. .||||++++.|+++..|+.++|.++-+
T Consensus 189 V~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~ 249 (325)
T COG4586 189 VNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFG 249 (325)
T ss_pred hhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHHhC
Confidence 2333322 5899999999998864 699999999999999999999876533
|
|
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-16 Score=171.92 Aligned_cols=131 Identities=22% Similarity=0.244 Sum_probs=95.2
Q ss_pred ceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCc--------eE----------EEcCeEEEEccCcccccccH
Q 000746 658 SNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDA--------SV----------VIRGTVAYVPQISWIFNATL 719 (1303)
Q Consensus 658 ~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~--------~~----------~~~~~iayv~Q~p~l~~~Ti 719 (1303)
+++++++++| +++|+||||||||||+++|.|.+++..|. .+ ..+.+|+|++|+|..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 6789999999 99999999999999999999988654221 01 1135799999999887
Q ss_pred HHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH------------------
Q 000746 720 RKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN------------------ 781 (1303)
Q Consensus 720 reNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~------------------ 781 (1303)
|+.. .+++..++++. ++.. ......||||||||++||||+..
T Consensus 89 -----~~~~-~~~~~~~~l~~----------~~~~----~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~L 148 (197)
T cd03278 89 -----YSII-SQGDVSEIIEA----------PGKK----VQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAAL 148 (197)
T ss_pred -----eeEE-ehhhHHHHHhC----------CCcc----ccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccC
Confidence 2211 13334444433 1111 23456799999999999999641
Q ss_pred ---------HHHhHhcCCCEEEEEecCCCcccccCEEEEEe
Q 000746 782 ---------SCIKEELRGKTRILVTNQLHFLPHVDRIILVS 813 (1303)
Q Consensus 782 ---------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~ 813 (1303)
+.+++..++.|+|++||+++.+..||+++.+.
T Consensus 149 D~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~~d~v~~~~ 189 (197)
T cd03278 149 DDANVERFARLLKEFSKETQFIVITHRKGTMEAADRLYGVT 189 (197)
T ss_pred CHHHHHHHHHHHHHhccCCEEEEEECCHHHHhhcceEEEEE
Confidence 12333335789999999999999999999884
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.7e-16 Score=179.25 Aligned_cols=177 Identities=21% Similarity=0.369 Sum_probs=140.1
Q ss_pred CCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-EcCeEEEEccCcc---
Q 000746 638 LPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-IRGTVAYVPQISW--- 713 (1303)
Q Consensus 638 ~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-~~~~iayv~Q~p~--- 713 (1303)
.+.+.++|++|+|+++..+++++||-|..++.+++|||||+||||||+++.|++.|..|.+.. .+..+++-.|+-.
T Consensus 387 ~pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~l 466 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQL 466 (614)
T ss_pred CCeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhc
Confidence 467999999999988778999999999999999999999999999999999999999985432 3456777777543
Q ss_pred cccccHHHHHc--cCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH----------
Q 000746 714 IFNATLRKNIL--FGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN---------- 781 (1303)
Q Consensus 714 l~~~TireNI~--~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~---------- 781 (1303)
-.+.|.-|+++ |....+.+.++..+..|+|..|...-|- .+||+|||.||..||.+++
T Consensus 467 dl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~----------~~LS~Gqr~rVlFa~l~~kqP~lLlLDEP 536 (614)
T KOG0927|consen 467 DLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPM----------SQLSDGQRRRVLFARLAVKQPHLLLLDEP 536 (614)
T ss_pred CcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccch----------hhcccccchhHHHHHHHhcCCcEEEecCC
Confidence 45678888887 4434567888999999999877655442 4699999999999999543
Q ss_pred ---------HHHhHhc--CCCEEEEEecCCCcccc-cCEEEEEeCCEEEE-ecCHH
Q 000746 782 ---------SCIKEEL--RGKTRILVTNQLHFLPH-VDRIILVSEGMIKE-EGSFE 824 (1303)
Q Consensus 782 ---------~~i~~~~--~~~TvilvtH~~~~l~~-aD~ii~l~~G~i~~-~g~~~ 824 (1303)
+.+.+.+ ..-+||+|||+..++.+ |++|.+.+||.+.. .|++.
T Consensus 537 tnhLDi~tid~laeaiNe~~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~ 592 (614)
T KOG0927|consen 537 TNHLDIETIDALAEAINEFPGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIE 592 (614)
T ss_pred CcCCCchhHHHHHHHHhccCCceeeeechhhHHHHHHHHhHhhccCceeecCccHH
Confidence 1122222 24689999999999865 89999999888764 45444
|
|
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.6e-16 Score=151.94 Aligned_cols=166 Identities=27% Similarity=0.392 Sum_probs=107.1
Q ss_pred cEEEEeeEEEeCC---C---CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-------------
Q 000746 640 AVSIKNGNFSWDS---K---SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------- 700 (1303)
Q Consensus 640 ~i~~~~~~f~~~~---~---~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------- 700 (1303)
.+.++|++.++.- + -|+++|+||+++.||++++-||||+|||||++.|-|.|.|++|.+..
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~ 83 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence 3667787766631 1 18999999999999999999999999999999999999999986432
Q ss_pred -------EcCeEEEEccCcc-cccccH----HHHHc-cCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCch
Q 000746 701 -------IRGTVAYVPQISW-IFNATL----RKNIL-FGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISG 767 (1303)
Q Consensus 701 -------~~~~iayv~Q~p~-l~~~Ti----reNI~-~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSG 767 (1303)
.+..||||+|--- +..-+- .|-++ -|-+.++.+ . ++..|..-+ .+|+.+- .--..++||
T Consensus 84 pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~-~---~a~~Ll~rL-nlperLW---~LaPaTFSG 155 (235)
T COG4778 84 PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVAR-A---KAADLLTRL-NLPERLW---SLAPATFSG 155 (235)
T ss_pred hHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHH-H---HHHHHHHHc-CCCHHHh---cCCCcccCC
Confidence 1346999999532 222222 22222 222222111 1 111222111 1233221 122467999
Q ss_pred HHHHHHHHHHHHHH-----------------------HHHhH-hcCCCEEEEEecCCCccc-ccCEEEEEe
Q 000746 768 GQKQRVSMARAVFN-----------------------SCIKE-ELRGKTRILVTNQLHFLP-HVDRIILVS 813 (1303)
Q Consensus 768 GQkQRiaLARAl~~-----------------------~~i~~-~~~~~TvilvtH~~~~l~-~aD~ii~l~ 813 (1303)
|++||+.|||..+- +.|.+ ..+|..+|=|-|+-+.-. -|||++-|.
T Consensus 156 GEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~ 226 (235)
T COG4778 156 GEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVS 226 (235)
T ss_pred chheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeecc
Confidence 99999999999431 22333 236889999999977643 489988774
|
|
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2e-15 Score=196.21 Aligned_cols=184 Identities=23% Similarity=0.374 Sum_probs=142.1
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-------------EcCeE
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-------------IRGTV 705 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-------------~~~~i 705 (1303)
..+..+|++..|+....+.+++++.|++||+.++.|+|||||||.++.|.|+.+|++|.... .++++
T Consensus 563 ~~~~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~i 642 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQL 642 (885)
T ss_pred ceEEEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhc
Confidence 56889999999986545899999999999999999999999999999999999999985432 34569
Q ss_pred EEEccCcccc-cccHHHHHccCC---CCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH
Q 000746 706 AYVPQISWIF-NATLRKNILFGS---EFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN 781 (1303)
Q Consensus 706 ayv~Q~p~l~-~~TireNI~~g~---~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~ 781 (1303)
|||||+.-++ .-|.||.+.+.. ...+.++.++++ .+.+.+...|+++ + .-.++|||+|.|+++|-|++-
T Consensus 643 GyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~--~ll~~~~L~~~~~-~----~~~~ySgG~kRkLs~aialig 715 (885)
T KOG0059|consen 643 GYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIE--KLLRLVGLGPYAN-K----QVRTYSGGNKRRLSFAIALIG 715 (885)
T ss_pred ccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHH--HHHHHcCChhhhc-c----chhhCCCcchhhHHHHHHHhc
Confidence 9999998887 569999998642 233333333322 1222233333333 2 245799999999999999642
Q ss_pred -----------------------HHHhHhcC-CCEEEEEecCCCcccc-cCEEEEEeCCEEEEecCHHHHHhc
Q 000746 782 -----------------------SCIKEELR-GKTRILVTNQLHFLPH-VDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 782 -----------------------~~i~~~~~-~~TvilvtH~~~~l~~-aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
+.+.+..+ ++.+|+.||.++..+. |||+.+|.+|++...|+++++..+
T Consensus 716 ~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsr 788 (885)
T KOG0059|consen 716 DPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSR 788 (885)
T ss_pred CCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhh
Confidence 23444444 4599999999999765 999999999999999999999754
|
|
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.6e-15 Score=162.08 Aligned_cols=158 Identities=16% Similarity=0.131 Sum_probs=102.2
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEec-CCcEEEEEcCCCCChHHHHHHHhcCC-CCCCCceE-----------EEcCeEE
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIP-VGSLVAIVGGTGEGKTSLVSAMLGEL-PPLKDASV-----------VIRGTVA 706 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~-~G~~~~ivG~sGsGKSTLl~~llg~~-~~~~g~~~-----------~~~~~ia 706 (1303)
.|+++|.. +|.+. ++++|+.. +|++++|+||||||||||+++|.+.+ .+..+... .....|+
T Consensus 5 ~i~l~nf~-~y~~~----~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~ 79 (213)
T cd03279 5 KLELKNFG-PFREE----QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVS 79 (213)
T ss_pred EEEEECCc-CcCCc----eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEE
Confidence 47888887 65433 56777654 58999999999999999999999533 22221111 0233588
Q ss_pred EEccCcccccccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCC-CCccccCCCCCCchHHHHHHHHHHHHHHH---
Q 000746 707 YVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDR-DLTEIGERGVNISGGQKQRVSMARAVFNS--- 782 (1303)
Q Consensus 707 yv~Q~p~l~~~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g-~~T~ige~G~~LSGGQkQRiaLARAl~~~--- 782 (1303)
+++|++...-...| .. ..+.+.+.+.. . ++.+ .++.+...+.+||||||||++||||+..+
T Consensus 80 ~~f~~~~~~~~~~r----~~-gl~~~~~~~~~---~-------l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~ 144 (213)
T cd03279 80 FTFQLGGKKYRVER----SR-GLDYDQFTRIV---L-------LPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVL 144 (213)
T ss_pred EEEEECCeEEEEEE----ec-CCCHHHHHHhh---h-------hhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHh
Confidence 88888743222222 21 23333333221 0 1222 23445667789999999999999998521
Q ss_pred ------------------------------HHhHhc-CCCEEEEEecCCCcccc-cCEEEEEeCCEE
Q 000746 783 ------------------------------CIKEEL-RGKTRILVTNQLHFLPH-VDRIILVSEGMI 817 (1303)
Q Consensus 783 ------------------------------~i~~~~-~~~TvilvtH~~~~l~~-aD~ii~l~~G~i 817 (1303)
.+.+.. +++|+|+|||+++.+.. +|+++++++|.+
T Consensus 145 ~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 145 QNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred hhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 122222 37899999999998754 799999998853
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.8e-15 Score=165.20 Aligned_cols=165 Identities=19% Similarity=0.213 Sum_probs=94.8
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCC----------------CCCCCceEEEcCe
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGEL----------------PPLKDASVVIRGT 704 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~----------------~~~~g~~~~~~~~ 704 (1303)
|+++|-- +|.+ ..++++++ |++++|+||||||||||+++|.+.+ .+.+|. ......
T Consensus 4 i~~~nfk-sy~~-~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~-~~~~~~ 75 (243)
T cd03272 4 VIIQGFK-SYKD-QTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGP-SVMSAY 75 (243)
T ss_pred EEEeCcc-Cccc-CcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCC-CCceEE
Confidence 4555431 3443 34666765 7899999999999999999998443 222220 001122
Q ss_pred EEEEccCcccc------cccHH-------HHHccCC-CCChhhHHHHHHHHhhHHHh--hcCCCCCCc-------cccCC
Q 000746 705 VAYVPQISWIF------NATLR-------KNILFGS-EFDPAKYWKTVDVSALQHDL--DLLPDRDLT-------EIGER 761 (1303)
Q Consensus 705 iayv~Q~p~l~------~~Tir-------eNI~~g~-~~~~~~~~~vl~~~~l~~~i--~~lp~g~~T-------~ige~ 761 (1303)
+.++.|++.-. +-+++ +++.+.. ..+.+++...++.+++.++- ...++|..+ ...++
T Consensus 76 v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~~~~ 155 (243)
T cd03272 76 VEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQDEQQE 155 (243)
T ss_pred EEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhcccccccc
Confidence 33333332100 00111 2222221 23445555555555443210 011222211 23567
Q ss_pred CCCCchHHHHHHHHHHHHHH---------------------------HHHhHhcCCCEEEEEecCCCcccccCEEEEEe
Q 000746 762 GVNISGGQKQRVSMARAVFN---------------------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVS 813 (1303)
Q Consensus 762 G~~LSGGQkQRiaLARAl~~---------------------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~ 813 (1303)
+.+||||||||++||||+.. +.+.+..+++|+|++||+.+....||++++|+
T Consensus 156 ~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~~~~~~d~i~~l~ 234 (243)
T cd03272 156 MQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPELLEVADKFYGVK 234 (243)
T ss_pred ccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEE
Confidence 78999999999999999851 12334435788999999988888999999984
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-12 Score=152.12 Aligned_cols=200 Identities=16% Similarity=0.177 Sum_probs=120.4
Q ss_pred HHhcChhhHhhcCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHccCcccccccchh
Q 000746 1102 EALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGIMI---WLIATFAVMQNGRAENQVAFAS 1178 (1303)
Q Consensus 1102 E~l~Gi~tIrAf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~ 1178 (1303)
+...+...|--|+.++.+....++..+..............|+++..+++.-+.. +++...-.+... .-....-+-
T Consensus 270 rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~h-~y~~~s~aE 348 (659)
T KOG0060|consen 270 RLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIFDYLGGILSYVVIAIPFFSGH-VYDDLSPAE 348 (659)
T ss_pred eeeecchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEEeeeeeccc-ccCCcCHHH
Confidence 4455666676677766666555555555555555556667788887766542211 111110011110 000011111
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcCCC-----------------CCCCC-CCCCCCCCCC
Q 000746 1179 TMGLL---LSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPS-----------------EAPGM-VESNRPPPAW 1237 (1303)
Q Consensus 1179 ~~gl~---l~~~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~-----------------E~~~~-~~~~~~~~~w 1237 (1303)
..+.. ..+...+.+.+..++....++..--+-..||.|+.+.-. |..+. ...+..+..|
T Consensus 349 L~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~~~~ 428 (659)
T KOG0060|consen 349 LSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSGKAE 428 (659)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCcccc
Confidence 22221 122334445555555555555555666788888764210 00000 0111224567
Q ss_pred CCcceEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1238 PSSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1238 p~~G~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|.+-.|+|++|++.=+.+.+...+|+||+|+.|+.+-|+|+||+|||||++.|.++++..+|+|.
T Consensus 429 ~~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~ 493 (659)
T KOG0060|consen 429 PADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLT 493 (659)
T ss_pred cccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEE
Confidence 88889999999999876555556679999999999999999999999999999999999999885
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=2e-14 Score=184.17 Aligned_cols=73 Identities=27% Similarity=0.498 Sum_probs=61.7
Q ss_pred ccCCCCCCchHHHHHHHHHHHHHHH--------------------------HHhHhc-CCCEEEEEecCCCcccccCEEE
Q 000746 758 IGERGVNISGGQKQRVSMARAVFNS--------------------------CIKEEL-RGKTRILVTNQLHFLPHVDRII 810 (1303)
Q Consensus 758 ige~G~~LSGGQkQRiaLARAl~~~--------------------------~i~~~~-~~~TvilvtH~~~~l~~aD~ii 810 (1303)
.+....+||||||||++||||+..+ .+.+.. +|+|+|+|||+++.+..||+|+
T Consensus 824 l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~~aD~ii 903 (943)
T PRK00349 824 LGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIKTADWII 903 (943)
T ss_pred ccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEE
Confidence 5777889999999999999997542 223322 5899999999999999999999
Q ss_pred EE------eCCEEEEecCHHHHHhcc
Q 000746 811 LV------SEGMIKEEGSFEELSKHG 830 (1303)
Q Consensus 811 ~l------~~G~i~~~g~~~~l~~~~ 830 (1303)
.| ++|+|+++|+++++.+..
T Consensus 904 ~Lgp~~G~~~G~Iv~~Gt~~el~~~~ 929 (943)
T PRK00349 904 DLGPEGGDGGGEIVATGTPEEVAKVE 929 (943)
T ss_pred EecCCcCCCCCEEEEeCCHHHHHhCc
Confidence 99 799999999999998654
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.3e-14 Score=185.35 Aligned_cols=72 Identities=22% Similarity=0.391 Sum_probs=60.0
Q ss_pred ccCCCCCCchHHHHHHHHHHHHHH--------------------------HHHhHhc-CCCEEEEEecCCCcccccCEEE
Q 000746 758 IGERGVNISGGQKQRVSMARAVFN--------------------------SCIKEEL-RGKTRILVTNQLHFLPHVDRII 810 (1303)
Q Consensus 758 ige~G~~LSGGQkQRiaLARAl~~--------------------------~~i~~~~-~~~TvilvtH~~~~l~~aD~ii 810 (1303)
.+....+||||||||++||||+.. +.+.+.. +|+|+|+|||+++.+..||+|+
T Consensus 803 l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi 882 (1809)
T PRK00635 803 LGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVL 882 (1809)
T ss_pred hcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEE
Confidence 567778999999999999999862 1222222 5889999999999998999999
Q ss_pred EEe------CCEEEEecCHHHHHhc
Q 000746 811 LVS------EGMIKEEGSFEELSKH 829 (1303)
Q Consensus 811 ~l~------~G~i~~~g~~~~l~~~ 829 (1303)
+|+ +|+++++|+++++...
T Consensus 883 ~L~p~gg~~~G~iv~~Gtpeel~~~ 907 (1809)
T PRK00635 883 ELGPEGGNLGGYLLASCSPEELIHL 907 (1809)
T ss_pred EEccCCCCCCCEEEEeCCHHHHHhc
Confidence 996 7999999999998753
|
|
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.7e-14 Score=159.19 Aligned_cols=150 Identities=19% Similarity=0.233 Sum_probs=99.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----------------EcCeEEEEccCccc----------ccccHH
Q 000746 667 GSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----------------IRGTVAYVPQISWI----------FNATLR 720 (1303)
Q Consensus 667 G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----------------~~~~iayv~Q~p~l----------~~~Tir 720 (1303)
..+++|+||||||||||+++|.+.+.+..++.+. ....+.++.|++-. ..-||+
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 4599999999999999999999998765332211 12378999998621 145888
Q ss_pred HHHccCCC----C-----ChhhHHHHHHHHhhHHH-h-hcCCCCCC-------ccccCCCCCCchHHHHHHHHHHHHH--
Q 000746 721 KNILFGSE----F-----DPAKYWKTVDVSALQHD-L-DLLPDRDL-------TEIGERGVNISGGQKQRVSMARAVF-- 780 (1303)
Q Consensus 721 eNI~~g~~----~-----~~~~~~~vl~~~~l~~~-i-~~lp~g~~-------T~ige~G~~LSGGQkQRiaLARAl~-- 780 (1303)
+||..+.. . ..+++.+.++.+++..| . ...++|.- ........+||||||||++||||+.
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~ 184 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALL 184 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHh
Confidence 88876542 1 12344555555554311 0 00011110 2234566789999999999999864
Q ss_pred --H-----------------------HHHhHhcCCCEEEEEecCCCcccccCEEEEEe--CCE
Q 000746 781 --N-----------------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVS--EGM 816 (1303)
Q Consensus 781 --~-----------------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~--~G~ 816 (1303)
. +.+.+..++.|+|+|||+.+.+..||+++-+. +|.
T Consensus 185 ~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~~d~v~~~~~~~~~ 247 (251)
T cd03273 185 LFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNNANVLFRTRFVDGT 247 (251)
T ss_pred hccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEEeeCCE
Confidence 1 12334446889999999998999999998774 554
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.7e-14 Score=152.54 Aligned_cols=132 Identities=23% Similarity=0.324 Sum_probs=94.6
Q ss_pred eeeeEecCCcEEEEEcCCCCChHHHHHHH----hcCCCCCCCceE---------EEcCeEEEEccCc-----ccc-cccH
Q 000746 659 NINLDIPVGSLVAIVGGTGEGKTSLVSAM----LGELPPLKDASV---------VIRGTVAYVPQIS-----WIF-NATL 719 (1303)
Q Consensus 659 ~i~l~i~~G~~~~ivG~sGsGKSTLl~~l----lg~~~~~~g~~~---------~~~~~iayv~Q~p-----~l~-~~Ti 719 (1303)
..++++.+| +++|+||||||||||+++| .|..+|..|+.. ..+..|++++|++ .+. +-|+
T Consensus 15 ~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~ 93 (204)
T cd03240 15 RSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAI 93 (204)
T ss_pred ceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhH
Confidence 345677788 9999999999999999999 498888665321 1234799999998 333 2399
Q ss_pred HHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHH------HHHHHHHHH------------
Q 000746 720 RKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQR------VSMARAVFN------------ 781 (1303)
Q Consensus 720 reNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQR------iaLARAl~~------------ 781 (1303)
.||+.++. +++..+.+ .+...+|||||||| ++||||+..
T Consensus 94 ~~~~~~~~---~~~~~~~~--------------------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~ 150 (204)
T cd03240 94 LENVIFCH---QGESNWPL--------------------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTT 150 (204)
T ss_pred hhceeeec---hHHHHHHH--------------------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCcc
Confidence 99998752 22222221 34567899999996 788888421
Q ss_pred -------H-HH----hHhcC--CCEEEEEecCCCcccccCEEEEEeC
Q 000746 782 -------S-CI----KEELR--GKTRILVTNQLHFLPHVDRIILVSE 814 (1303)
Q Consensus 782 -------~-~i----~~~~~--~~TvilvtH~~~~l~~aD~ii~l~~ 814 (1303)
+ .+ .+..+ ++|+|++||+++.+..||+++.|++
T Consensus 151 ~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~ 197 (204)
T cd03240 151 NLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEK 197 (204)
T ss_pred ccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEee
Confidence 2 22 22223 6899999999999889999999953
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.6e-14 Score=164.42 Aligned_cols=68 Identities=21% Similarity=0.399 Sum_probs=62.2
Q ss_pred CCCCCcceEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhccc-----CCCCeee
Q 000746 1235 PAWPSSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVE-----LERGENI 1302 (1303)
Q Consensus 1235 ~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd-----~~~G~I~ 1302 (1303)
..||..|.|+|+|++++|+++.+++|+|+||+|++||++|||||+|||||||+++|+|+++ |++|+|.
T Consensus 73 ~~~~~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~ 145 (329)
T PRK14257 73 EDFNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIY 145 (329)
T ss_pred CCCCcCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEE
Confidence 4599999999999999997555679999999999999999999999999999999999997 4689875
|
|
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.3e-15 Score=145.76 Aligned_cols=171 Identities=20% Similarity=0.297 Sum_probs=124.0
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc-------------CeEEE
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR-------------GTVAY 707 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~-------------~~iay 707 (1303)
+.++|+... .-|-.+|.++..||..-+|||||||||||+..+.|+.+- +|++ .+. ++=+|
T Consensus 4 ~qln~v~~~-----tRL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~-sGsi-~~~G~~l~~~~~~eLArhRAY 76 (248)
T COG4138 4 MQLNDVAES-----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG-SGSI-QFAGQPLEAWSATELARHRAY 76 (248)
T ss_pred eeecccccc-----ccccccccccccceEEEEECCCCccHHHHHHHHhCCCCC-CceE-EECCcchhHHhHhHHHHHHHH
Confidence 455666532 346778999999999999999999999999999999864 6643 332 34688
Q ss_pred EccC-cccccccHHHHHccCCCCC--hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHH-----
Q 000746 708 VPQI-SWIFNATLRKNILFGSEFD--PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAV----- 779 (1303)
Q Consensus 708 v~Q~-p~l~~~TireNI~~g~~~~--~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl----- 779 (1303)
.+|+ .-.|..-|..-+.+..|.. .+.+.++.+.-+ .+..+|..-..||||+-||+-||-..
T Consensus 77 LsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~-----------l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~P 145 (248)
T COG4138 77 LSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALA-----------LDDKLGRSTNQLSGGEWQRVRLAAVVLQITP 145 (248)
T ss_pred HhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhc-----------ccchhhhhhhhcCcccceeeEEeEEEEEecC
Confidence 8875 4577788888888877641 112222222222 22234555578999999999999651
Q ss_pred -------------------------HHHHHhHhc-CCCEEEEEecCCCc-ccccCEEEEEeCCEEEEecCHHHHHhc
Q 000746 780 -------------------------FNSCIKEEL-RGKTRILVTNQLHF-LPHVDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 780 -------------------------~~~~i~~~~-~~~TvilvtH~~~~-l~~aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
++..+.+.. .|.+||+..|+++. ++.||++..++.|++..+|..+|.+..
T Consensus 146 d~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~ 222 (248)
T COG4138 146 DANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTP 222 (248)
T ss_pred CCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcCh
Confidence 222333322 69999999999975 899999999999999999999998754
|
|
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.6e-14 Score=156.57 Aligned_cols=150 Identities=18% Similarity=0.181 Sum_probs=101.7
Q ss_pred EecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceE-------------------EEcCeEEEEccCcc--cccccHHH
Q 000746 663 DIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASV-------------------VIRGTVAYVPQISW--IFNATLRK 721 (1303)
Q Consensus 663 ~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~-------------------~~~~~iayv~Q~p~--l~~~Tire 721 (1303)
...++ +++|+||||||||||+.+|.+.+.+..|+.. ...-.+.|..|++- ++..++++
T Consensus 19 ~~~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~ 97 (247)
T cd03275 19 GPFDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITG 97 (247)
T ss_pred cCCCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEEC
Confidence 33344 9999999999999999999988765433211 01113455555432 33444444
Q ss_pred HHcc----CCCCChhhHHHHHHHHhhHHHhhc--CCCCCCccccCCC---------CCCchHHHHHHHHHHHHHHH----
Q 000746 722 NILF----GSEFDPAKYWKTVDVSALQHDLDL--LPDRDLTEIGERG---------VNISGGQKQRVSMARAVFNS---- 782 (1303)
Q Consensus 722 NI~~----g~~~~~~~~~~vl~~~~l~~~i~~--lp~g~~T~ige~G---------~~LSGGQkQRiaLARAl~~~---- 782 (1303)
+-.. +.+.+++++.+.++.++++.+... .++|.-+.+.+.. .+||||||||++||||+..+
T Consensus 98 ~~~~~~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~ 177 (247)
T cd03275 98 GSSSYRINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQP 177 (247)
T ss_pred CceEEEECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCC
Confidence 3211 335678888999999998755322 3566666665433 68999999999999997521
Q ss_pred -----------------------HHhHhcC-CCEEEEEecCCCcccccCEEEEEe
Q 000746 783 -----------------------CIKEELR-GKTRILVTNQLHFLPHVDRIILVS 813 (1303)
Q Consensus 783 -----------------------~i~~~~~-~~TvilvtH~~~~l~~aD~ii~l~ 813 (1303)
.+.+..+ +.|+|+|||+.+.+..||++++|.
T Consensus 178 p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~ 232 (247)
T cd03275 178 APFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVGVY 232 (247)
T ss_pred CCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEEEE
Confidence 2223323 789999999999999999999984
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.6e-13 Score=171.40 Aligned_cols=69 Identities=26% Similarity=0.524 Sum_probs=58.4
Q ss_pred ccCCCCCCchHHHHHHHHHHHHHHH--------------------------HHhHhc-CCCEEEEEecCCCcccccCEEE
Q 000746 758 IGERGVNISGGQKQRVSMARAVFNS--------------------------CIKEEL-RGKTRILVTNQLHFLPHVDRII 810 (1303)
Q Consensus 758 ige~G~~LSGGQkQRiaLARAl~~~--------------------------~i~~~~-~~~TvilvtH~~~~l~~aD~ii 810 (1303)
.+....+||||||||++||||+..+ .+.+.. +|+|+|+++|+++.+..||+|+
T Consensus 822 l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~~aD~ii 901 (924)
T TIGR00630 822 LGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIKTADYII 901 (924)
T ss_pred hcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEE
Confidence 5777889999999999999997631 222222 5899999999999999999999
Q ss_pred EE------eCCEEEEecCHHHH
Q 000746 811 LV------SEGMIKEEGSFEEL 826 (1303)
Q Consensus 811 ~l------~~G~i~~~g~~~~l 826 (1303)
+| ++|+|++.|+++++
T Consensus 902 ~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 902 DLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EecCCccCCCCEEEEeCCHHHh
Confidence 99 79999999998875
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.9e-13 Score=153.29 Aligned_cols=185 Identities=19% Similarity=0.321 Sum_probs=116.6
Q ss_pred CCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcCeEEEEccCcccccc
Q 000746 638 LPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISWIFNA 717 (1303)
Q Consensus 638 ~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~~iayv~Q~p~l~~~ 717 (1303)
...+.++|++++|.+. ..++|..|++.+|+.++|+|++||||||+|++|.|--.|..-.. .+...+++----..
T Consensus 73 s~dvk~~sls~s~~g~-~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~-----d~y~ls~e~~ps~~ 146 (614)
T KOG0927|consen 73 SRDVKIESLSLSFHGV-ELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHI-----DFYLLSREIEPSEK 146 (614)
T ss_pred cccceeeeeeeccCCc-eeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCccc-----chhhhcccCCCchH
Confidence 3569999999999754 68999999999999999999999999999999999887755321 12222222111111
Q ss_pred -cHHHHHccCCC------CChhhHHHHHHH-------------HhhHHH------hhcCC-CCCC-ccccCCCCCCchHH
Q 000746 718 -TLRKNILFGSE------FDPAKYWKTVDV-------------SALQHD------LDLLP-DRDL-TEIGERGVNISGGQ 769 (1303)
Q Consensus 718 -TireNI~~g~~------~~~~~~~~vl~~-------------~~l~~~------i~~lp-~g~~-T~ige~G~~LSGGQ 769 (1303)
++..-+..... +-.|+|...++. ..++.| ...+. .|.. ......-.+|||||
T Consensus 147 ~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGw 226 (614)
T KOG0927|consen 147 QAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGW 226 (614)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchH
Confidence 12222111100 000111111110 000000 00011 1111 22334456899999
Q ss_pred HHHHHHHHHHHHH-------------------HHhHhc--CCC-EEEEEecCCCcccc-cCEEEEEeCCE-EEEecCHHH
Q 000746 770 KQRVSMARAVFNS-------------------CIKEEL--RGK-TRILVTNQLHFLPH-VDRIILVSEGM-IKEEGSFEE 825 (1303)
Q Consensus 770 kQRiaLARAl~~~-------------------~i~~~~--~~~-TvilvtH~~~~l~~-aD~ii~l~~G~-i~~~g~~~~ 825 (1303)
|.|++||||||.+ -+.+.+ -++ ++|+++|.-++++. |.+|+.|++++ +...|++++
T Consensus 227 rmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gnydq 306 (614)
T KOG0927|consen 227 RMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGNYDQ 306 (614)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhhhhHhhhhheecccceeeecCCHHH
Confidence 9999999998742 133444 245 89999999999975 99999999998 778999988
Q ss_pred HHh
Q 000746 826 LSK 828 (1303)
Q Consensus 826 l~~ 828 (1303)
+..
T Consensus 307 y~~ 309 (614)
T KOG0927|consen 307 YVK 309 (614)
T ss_pred Hhh
Confidence 764
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.3e-13 Score=148.71 Aligned_cols=176 Identities=23% Similarity=0.360 Sum_probs=121.7
Q ss_pred CCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-EcCeEEEEccCcc--c
Q 000746 638 LPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-IRGTVAYVPQISW--I 714 (1303)
Q Consensus 638 ~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-~~~~iayv~Q~p~--l 714 (1303)
.+.+-+.||+|.|++.+|.+++++|-|.-.+.++||||+|.||||||++|+|.++|..|.... .|-+||+-.|+.- |
T Consensus 584 PPvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L 663 (807)
T KOG0066|consen 584 PPVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEAL 663 (807)
T ss_pred CCeeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhh
Confidence 456789999999999899999999999999999999999999999999999999999985432 3447999988753 2
Q ss_pred -ccccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHH--------HH----
Q 000746 715 -FNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAV--------FN---- 781 (1303)
Q Consensus 715 -~~~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl--------~~---- 781 (1303)
...|--|-+.-+-..+.++-++.+-..+|..-. +|. +-..||||||.||+||--- ++
T Consensus 664 ~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHA-------HTi---kikdLSGGQKaRValaeLal~~PDvlILDEPTN 733 (807)
T KOG0066|consen 664 NGEETPVEYLQRKFNLPYQEARKQLGTFGLASHA-------HTI---KIKDLSGGQKARVALAELALGGPDVLILDEPTN 733 (807)
T ss_pred ccccCHHHHHHHhcCCChHHHHHHhhhhhhhhcc-------ceE---eeeecCCcchHHHHHHHHhcCCCCEEEecCCCC
Confidence 234666666522222333334444444443211 221 2346999999999999761 11
Q ss_pred -----------HHHhHhcCCCEEEEEecCCCcccccCE-EEEEeCCEEEE-ecCHHH
Q 000746 782 -----------SCIKEELRGKTRILVTNQLHFLPHVDR-IILVSEGMIKE-EGSFEE 825 (1303)
Q Consensus 782 -----------~~i~~~~~~~TvilvtH~~~~l~~aD~-ii~l~~G~i~~-~g~~~~ 825 (1303)
++|.+. +-.||+|||+-..+...|. .+|+++-.|-+ .|.+++
T Consensus 734 NLDIESIDALaEAIney--~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdFeD 788 (807)
T KOG0066|consen 734 NLDIESIDALAEAINEY--NGGVIMVSHDERLIVETDCNLWVVENQGIDEIDGDFED 788 (807)
T ss_pred CcchhhHHHHHHHHHhc--cCcEEEEecccceeeecCceEEEEccCChhhccccHHH
Confidence 223222 4579999999998877654 45556544443 344544
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=8e-13 Score=151.92 Aligned_cols=184 Identities=23% Similarity=0.383 Sum_probs=136.9
Q ss_pred CCCCCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcC-----------
Q 000746 635 EPELPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRG----------- 703 (1303)
Q Consensus 635 ~~~~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~----------- 703 (1303)
.++...++++|++..-+...+.+++|||++++||+++|.|-.|-|-+-|+.+|.|+.++.+| .+.+++
T Consensus 252 ~pg~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G-~I~l~G~~v~~~~~~~~ 330 (501)
T COG3845 252 TPGEVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASG-RILLNGKDVLGRLSPRE 330 (501)
T ss_pred CCCCeEEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCc-eEEECCEeccccCCHHH
Confidence 34556789999997654434689999999999999999999999999999999999988775 444332
Q ss_pred ----eEEEEccCc----ccccccHHHHHccCCCCCh----------hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCC
Q 000746 704 ----TVAYVPQIS----WIFNATLRKNILFGSEFDP----------AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNI 765 (1303)
Q Consensus 704 ----~iayv~Q~p----~l~~~TireNI~~g~~~~~----------~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~L 765 (1303)
.++|||.|. -....|+.||+.++.-.++ ..+.+.. ..+-+.++--+.+-++ .-.+|
T Consensus 331 ~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a--~~li~~fdVr~~~~~~----~a~~L 404 (501)
T COG3845 331 RRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFA--RELIEEFDVRAPSPDA----PARSL 404 (501)
T ss_pred HHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHH--HHHHHHcCccCCCCCc----chhhc
Confidence 589999887 3668899999998753221 2222221 1233333333444443 34579
Q ss_pred chHHHHHHHHHHHHH------------------------HHHHhHhcCCCEEEEEecCCCc-ccccCEEEEEeCCEEEEe
Q 000746 766 SGGQKQRVSMARAVF------------------------NSCIKEELRGKTRILVTNQLHF-LPHVDRIILVSEGMIKEE 820 (1303)
Q Consensus 766 SGGQkQRiaLARAl~------------------------~~~i~~~~~~~TvilvtH~~~~-l~~aD~ii~l~~G~i~~~ 820 (1303)
|||+.||+-+||-+. +..+....+|+.|++|+-+++. +..||+|.||.+|+++..
T Consensus 405 SGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~ 484 (501)
T COG3845 405 SGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGI 484 (501)
T ss_pred CCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceecc
Confidence 999999999999842 2333444579999999999987 567999999999999987
Q ss_pred cCHHH
Q 000746 821 GSFEE 825 (1303)
Q Consensus 821 g~~~~ 825 (1303)
.++++
T Consensus 485 ~~~~~ 489 (501)
T COG3845 485 VPPEE 489 (501)
T ss_pred ccccc
Confidence 76654
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.5e-13 Score=149.46 Aligned_cols=156 Identities=22% Similarity=0.340 Sum_probs=112.7
Q ss_pred eeEEEeCCCCCccceeeeEe-----cCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcCeEEEEccCc-cccccc
Q 000746 645 NGNFSWDSKSPTLSNINLDI-----PVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQIS-WIFNAT 718 (1303)
Q Consensus 645 ~~~f~~~~~~~~L~~i~l~i-----~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~~iayv~Q~p-~l~~~T 718 (1303)
+.-+.|++-...+.+..|++ ..||+++++||||-||||+++.|.|.++|++|+ ...-+|+|=||-- .-++||
T Consensus 340 ~~lv~y~~~~k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~--~~~~~vSyKPQyI~~~~~gt 417 (591)
T COG1245 340 DTLVEYPDLKKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS--EEDLKVSYKPQYISPDYDGT 417 (591)
T ss_pred ceeeecchheeecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC--CccceEeecceeecCCCCCc
Confidence 33455654444556666655 567889999999999999999999999999987 4556799999942 238999
Q ss_pred HHHHHccCCC--CChhhHHH-HHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHH---------------
Q 000746 719 LRKNILFGSE--FDPAKYWK-TVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF--------------- 780 (1303)
Q Consensus 719 ireNI~~g~~--~~~~~~~~-vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~--------------- 780 (1303)
|++-+.-..+ +...+|+. +++--.|++- +...-.+||||+.||+|+|-||.
T Consensus 418 V~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i-----------~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~L 486 (591)
T COG1245 418 VEDLLRSAIRSAFGSSYFKTEIVKPLNLEDL-----------LERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYL 486 (591)
T ss_pred HHHHHHHhhhhhcccchhHHhhcCccchHHH-----------HhcccccCCchhHHHHHHHHHhccccCEEEecCchhhc
Confidence 9998764332 44555543 3333333332 22334579999999999999953
Q ss_pred --------HHHHhHhc--CCCEEEEEecCCCcccc-cCEEEEEe
Q 000746 781 --------NSCIKEEL--RGKTRILVTNQLHFLPH-VDRIILVS 813 (1303)
Q Consensus 781 --------~~~i~~~~--~~~TvilvtH~~~~l~~-aD~ii~l~ 813 (1303)
.++|++.. .++|.++|-|++-.+.+ +|++++.+
T Consensus 487 DvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 487 DVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred cHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEe
Confidence 23455433 58999999999999886 89999985
|
|
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.2e-14 Score=155.83 Aligned_cols=161 Identities=19% Similarity=0.208 Sum_probs=104.1
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcCeEEEEccCccccc-cc
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISWIFN-AT 718 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~~iayv~Q~p~l~~-~T 718 (1303)
.++++|.. +|.+ ..+++++++ ++++|+|||||||||++++|...+-... . ...+++++|++|+....+ .|
T Consensus 5 ~l~l~nfk-~~~~-~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~G~~~-~-~~~~~~i~~~~~~~~~~~~~~ 75 (212)
T cd03274 5 KLVLENFK-SYAG-EQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVFGFRA-S-KMRQKKLSDLIHNSAGHPNLD 75 (212)
T ss_pred EEEEECcc-cCCC-CeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHHhccCH-H-HhhhhhHHHHhcCCCCCCCCc
Confidence 36666654 5643 358888887 8999999999999999999983221100 0 011257999999987664 47
Q ss_pred HHHHHccCCCCCh-hhHH--HH-HHH------HhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHH----H---
Q 000746 719 LRKNILFGSEFDP-AKYW--KT-VDV------SALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF----N--- 781 (1303)
Q Consensus 719 ireNI~~g~~~~~-~~~~--~v-l~~------~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~----~--- 781 (1303)
.++++.+...... +.+. .. .+. .+-..++..+|++.++.+ ..||||||||++||||+. +
T Consensus 76 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~----~~lS~G~~~r~~la~al~~~~~~~p~ 151 (212)
T cd03274 76 SCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNI----SNLSGGEKTLSSLALVFALHHYKPTP 151 (212)
T ss_pred eEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccch----hhcCHHHHHHHHHHHHHHhcccCCCC
Confidence 8887775443210 0000 00 000 011113344566665543 479999999999999874 1
Q ss_pred --------------------HHHhHhcCCCEEEEEecCCCcccccCEEEEEe
Q 000746 782 --------------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVS 813 (1303)
Q Consensus 782 --------------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~ 813 (1303)
+.+.+..++.|+|++||+.+....||++++|.
T Consensus 152 ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~~~d~v~~~~ 203 (212)
T cd03274 152 LYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELADRLVGIY 203 (212)
T ss_pred EEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHHhCCEEEEEE
Confidence 12233335789999999988888999999994
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.6e-13 Score=143.39 Aligned_cols=60 Identities=28% Similarity=0.482 Sum_probs=56.7
Q ss_pred eEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1242 SIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1242 ~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
.|+++||+..|+. ...+|+||||+|++||.|||+|+||||||||++.|.|+.||++|+|.
T Consensus 3 ~i~~~nl~k~yp~-~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~ 62 (258)
T COG3638 3 MIEVKNLSKTYPG-GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEIL 62 (258)
T ss_pred eEEEeeeeeecCC-CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEE
Confidence 4899999999974 46899999999999999999999999999999999999999999985
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.3e-12 Score=153.70 Aligned_cols=178 Identities=25% Similarity=0.406 Sum_probs=125.5
Q ss_pred CCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcC--------------
Q 000746 638 LPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRG-------------- 703 (1303)
Q Consensus 638 ~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~-------------- 703 (1303)
.+.++++|++.. ..++|+||++++||+++|.|-.|||+|-++++|.|.-++.+| .+.+++
T Consensus 261 ~~~l~v~~l~~~-----~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G-~i~l~G~~v~~~sp~~Ai~~ 334 (500)
T COG1129 261 EPVLEVRNLSGG-----GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSG-EILLDGKPVRIRSPRDAIKA 334 (500)
T ss_pred CcEEEEecCCCC-----CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCc-eEEECCEEccCCCHHHHHHc
Confidence 345678877632 258899999999999999999999999999999997766655 555443
Q ss_pred eEEEEccCc----ccccccHHHHHccCC--CCChh-hHHHHHHHHhhHHHhhcC---CCCCCccccCCCCCCchHHHHHH
Q 000746 704 TVAYVPQIS----WIFNATLRKNILFGS--EFDPA-KYWKTVDVSALQHDLDLL---PDRDLTEIGERGVNISGGQKQRV 773 (1303)
Q Consensus 704 ~iayv~Q~p----~l~~~TireNI~~g~--~~~~~-~~~~vl~~~~l~~~i~~l---p~g~~T~ige~G~~LSGGQkQRi 773 (1303)
.|+|||.|- -+...+|++||.+.. .+... .+.+.-+....++.++.| ..+.+. .-.+||||-+|++
T Consensus 335 Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~----~v~~LSGGNQQKV 410 (500)
T COG1129 335 GIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQ----PIGTLSGGNQQKV 410 (500)
T ss_pred CCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccc----hhhcCCchhhhhH
Confidence 499999764 345779999998762 11111 222222222233333333 222333 3457999999999
Q ss_pred HHHHHHHH-----------------------HHHhHhc-CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHH
Q 000746 774 SMARAVFN-----------------------SCIKEEL-RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEE 825 (1303)
Q Consensus 774 aLARAl~~-----------------------~~i~~~~-~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~ 825 (1303)
.|||.+.. +.+++.. +|+++|+||..+..+ ..||||+||.+|+|+..=+.++
T Consensus 411 vlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~~ 487 (500)
T COG1129 411 VLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDREE 487 (500)
T ss_pred HHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEecccc
Confidence 99999532 2344433 689999999998774 5899999999999997544443
|
|
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.7e-12 Score=130.13 Aligned_cols=175 Identities=24% Similarity=0.419 Sum_probs=118.1
Q ss_pred CCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc-------------Ce
Q 000746 638 LPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR-------------GT 704 (1303)
Q Consensus 638 ~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~-------------~~ 704 (1303)
+.+|++.+..|.|+...|++-|+|+++|.|+.+.+||.||+||||||++|.|---. .|+.+.+. +.
T Consensus 11 ~~aievsgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv-~~~~v~VlgrsaFhDt~l~~Sgd 89 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMV-GGGVVQVLGRSAFHDTSLESSGD 89 (291)
T ss_pred cceEEEeccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccc-cCCeEEEcCcCccccccccccCc
Confidence 46799999999999888999999999999999999999999999999999996543 23343321 12
Q ss_pred EEEEcc----------Ccccc-cccHHHHHccCCCC-ChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHH
Q 000746 705 VAYVPQ----------ISWIF-NATLRKNILFGSEF-DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQR 772 (1303)
Q Consensus 705 iayv~Q----------~p~l~-~~TireNI~~g~~~-~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQR 772 (1303)
..|..- +.-|+ +-++ +...||-.. |+++-++.++.- +-| +.=+-..+|-|||.|
T Consensus 90 l~YLGgeW~~~~~~agevplq~D~sa-e~mifgV~g~dp~Rre~LI~iL--DId-----------l~WRmHkvSDGqrRR 155 (291)
T KOG2355|consen 90 LSYLGGEWSKTVGIAGEVPLQGDISA-EHMIFGVGGDDPERREKLIDIL--DID-----------LRWRMHKVSDGQRRR 155 (291)
T ss_pred eeEecccccccccccccccccccccH-HHHHhhccCCChhHhhhhhhhe--ecc-----------ceEEEeeccccchhh
Confidence 333322 11222 2233 333444332 334333333221 111 222346799999999
Q ss_pred HHHHHHHHH-----------------------HHHhH--hcCCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHH
Q 000746 773 VSMARAVFN-----------------------SCIKE--ELRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEEL 826 (1303)
Q Consensus 773 iaLARAl~~-----------------------~~i~~--~~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l 826 (1303)
+.|+-.+++ +-+++ .-++.|+|..||=-+-+. .+.+++.+.+|+++..-.+++.
T Consensus 156 VQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~~~~i 235 (291)
T KOG2355|consen 156 VQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLKYQKI 235 (291)
T ss_pred hHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeeccccchh
Confidence 999987432 11222 237999999999988765 5899999999999986655554
Q ss_pred H
Q 000746 827 S 827 (1303)
Q Consensus 827 ~ 827 (1303)
.
T Consensus 236 ~ 236 (291)
T KOG2355|consen 236 K 236 (291)
T ss_pred h
Confidence 3
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.9e-13 Score=153.92 Aligned_cols=173 Identities=21% Similarity=0.350 Sum_probs=131.6
Q ss_pred CCCcEEEEeeEEEeCCCC-CccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-EcCeEEEEccCccc
Q 000746 637 ELPAVSIKNGNFSWDSKS-PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-IRGTVAYVPQISWI 714 (1303)
Q Consensus 637 ~~~~i~~~~~~f~~~~~~-~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-~~~~iayv~Q~p~l 714 (1303)
..+.+++.+|+|.|+++. +.+.++++++..-+.++++|++|+||||+++++.|+..|..|.... -|.+|+|-.|...=
T Consensus 359 ~~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~~f~Qhhvd 438 (582)
T KOG0062|consen 359 SPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIKYFAQHHVD 438 (582)
T ss_pred CCCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecccceecchhHhhhh
Confidence 346799999999998776 7899999999999999999999999999999999999998874332 35689999997532
Q ss_pred c-cccHHHHHccCCC---CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHH--------H-
Q 000746 715 F-NATLRKNILFGSE---FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF--------N- 781 (1303)
Q Consensus 715 ~-~~TireNI~~g~~---~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~--------~- 781 (1303)
+ +-.+.+--.+-+. -.+++|++.+...+|..++..-+ -..||||||-||++|-+.+ |
T Consensus 439 ~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~s----------i~~LSGGQKsrvafA~~~~~~PhlLVLDE 508 (582)
T KOG0062|consen 439 FLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQS----------IASLSGGQKSRVAFAACTWNNPHLLVLDE 508 (582)
T ss_pred HHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhcc----------ccccCCcchhHHHHHHHhcCCCcEEEecC
Confidence 2 2222221111111 26889999988888877765432 2469999999999999832 1
Q ss_pred ----------HHHhHhcC--CCEEEEEecCCCcccc-cCEEEEEeCCEEEE
Q 000746 782 ----------SCIKEELR--GKTRILVTNQLHFLPH-VDRIILVSEGMIKE 819 (1303)
Q Consensus 782 ----------~~i~~~~~--~~TvilvtH~~~~l~~-aD~ii~l~~G~i~~ 819 (1303)
+++...++ +--||+|||+.+++.. |+.+.+.+||++..
T Consensus 509 PTNhLD~dsl~AL~~Al~~F~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 509 PTNHLDRDSLGALAKALKNFNGGVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred CCccccHHHHHHHHHHHHhcCCcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 12222322 4579999999999875 89999999999985
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.7e-13 Score=138.03 Aligned_cols=59 Identities=32% Similarity=0.517 Sum_probs=56.8
Q ss_pred EEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1243 I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+|+||+.+|+.+ +++|+||||+|++||.+=++|||||||||++++|+|.-.|++|+|.
T Consensus 2 I~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~ 60 (223)
T COG2884 2 IRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKIL 60 (223)
T ss_pred eeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEE
Confidence 8999999999876 7899999999999999999999999999999999999999999985
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.1e-12 Score=151.83 Aligned_cols=74 Identities=28% Similarity=0.503 Sum_probs=61.4
Q ss_pred cccCCCCCCchHHHHHHHHHHHHHH--------------------------HHHhHhc-CCCEEEEEecCCCcccccCEE
Q 000746 757 EIGERGVNISGGQKQRVSMARAVFN--------------------------SCIKEEL-RGKTRILVTNQLHFLPHVDRI 809 (1303)
Q Consensus 757 ~ige~G~~LSGGQkQRiaLARAl~~--------------------------~~i~~~~-~~~TvilvtH~~~~l~~aD~i 809 (1303)
.+|....+||||+.|||-||.-|-+ +++.+.. +|.|||+|-|+++.++.||+|
T Consensus 815 ~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk~AD~I 894 (935)
T COG0178 815 KLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIKTADWI 894 (935)
T ss_pred ecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEeecCEE
Confidence 3688889999999999999987432 1222222 699999999999999999999
Q ss_pred EEE------eCCEEEEecCHHHHHhcc
Q 000746 810 ILV------SEGMIKEEGSFEELSKHG 830 (1303)
Q Consensus 810 i~l------~~G~i~~~g~~~~l~~~~ 830 (1303)
+-| +.|+|+.+|+|+|+.+..
T Consensus 895 IDLGPeGG~~GG~iva~GTPeeva~~~ 921 (935)
T COG0178 895 IDLGPEGGDGGGEIVASGTPEEVAKVK 921 (935)
T ss_pred EEcCCCCCCCCceEEEecCHHHHHhCc
Confidence 999 368999999999998754
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=6e-13 Score=137.39 Aligned_cols=59 Identities=31% Similarity=0.501 Sum_probs=55.7
Q ss_pred eEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1242 SIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1242 ~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
-|+++||+.+|.+ ..||||||++|++||.|+||||||||||||+++|.++-+|++|+|.
T Consensus 2 mi~i~~l~K~fg~--~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~ 60 (240)
T COG1126 2 MIEIKNLSKSFGD--KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSIT 60 (240)
T ss_pred eEEEEeeeEEeCC--eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEE
Confidence 4899999999964 3699999999999999999999999999999999999999999985
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.2e-12 Score=147.95 Aligned_cols=61 Identities=36% Similarity=0.755 Sum_probs=57.0
Q ss_pred ceEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1241 GSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1241 G~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+|+|+||+++|+++.+++|+|+||+|++||++||||++|||||||+++|+|+++ ++|+|+
T Consensus 1 g~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~ 61 (275)
T cd03289 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQ 61 (275)
T ss_pred CeEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEE
Confidence 6899999999997655679999999999999999999999999999999999998 789985
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.7e-12 Score=141.55 Aligned_cols=66 Identities=55% Similarity=1.008 Sum_probs=61.5
Q ss_pred CCCcceEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1237 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1237 wp~~G~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
||..+.|+++|++++|++...++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.
T Consensus 1 ~~~~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 66 (207)
T cd03369 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIE 66 (207)
T ss_pred CCCCCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEE
Confidence 888999999999999965334799999999999999999999999999999999999999999984
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.5e-12 Score=164.71 Aligned_cols=162 Identities=21% Similarity=0.328 Sum_probs=124.1
Q ss_pred CccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceE----E----------EcCeEEEEccCc-ccccccH
Q 000746 655 PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASV----V----------IRGTVAYVPQIS-WIFNATL 719 (1303)
Q Consensus 655 ~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~----~----------~~~~iayv~Q~p-~l~~~Ti 719 (1303)
.+|+||+=-++||.++|++|+||+||||||+.|.|-.. .| .+ . .++.+|||.|++ ++-.-||
T Consensus 805 qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t--~G-~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TV 881 (1391)
T KOG0065|consen 805 QLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKT--GG-YIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTV 881 (1391)
T ss_pred EhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcc--cc-eEEeEEEECCeeCchhhhccccceeecccccCcccch
Confidence 68999999999999999999999999999999999652 22 22 2 346799999976 5668899
Q ss_pred HHHHccCC------CCC-hhh---HHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHH-----------
Q 000746 720 RKNILFGS------EFD-PAK---YWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARA----------- 778 (1303)
Q Consensus 720 reNI~~g~------~~~-~~~---~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARA----------- 778 (1303)
||-+.|.. +.+ +++ .++|++..+|++ --|..||.-|..||.+||.|+.||=-
T Consensus 882 rESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~-------~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFL 954 (1391)
T KOG0065|consen 882 RESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKE-------YADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFL 954 (1391)
T ss_pred HHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchh-------hhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEe
Confidence 99998752 222 333 355665555543 23467899999999999999999843
Q ss_pred -------------HHHHHHhHh-cCCCEEEEEecCCCc--ccccCEEEEEe-CCEEEEecCHHHH
Q 000746 779 -------------VFNSCIKEE-LRGKTRILVTNQLHF--LPHVDRIILVS-EGMIKEEGSFEEL 826 (1303)
Q Consensus 779 -------------l~~~~i~~~-~~~~TvilvtH~~~~--l~~aD~ii~l~-~G~i~~~g~~~~l 826 (1303)
++-+.+++. ..|+||+..-|+++. .+..|+++.|+ +|+.+..|+..+-
T Consensus 955 DEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~ 1019 (1391)
T KOG0065|consen 955 DEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGEN 1019 (1391)
T ss_pred cCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccc
Confidence 222333333 269999999999985 68899999994 7899999987653
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.2e-12 Score=137.55 Aligned_cols=58 Identities=29% Similarity=0.563 Sum_probs=55.3
Q ss_pred EEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1243 I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+|+|||++|.+ ..+++|+||+|++||.+.++|||||||||+++.+.|+++|++|+|+
T Consensus 2 I~~~nvsk~y~~--~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~ 59 (309)
T COG1125 2 IEFENVSKRYGN--KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEIL 59 (309)
T ss_pred ceeeeeehhcCC--ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEE
Confidence 799999999973 4699999999999999999999999999999999999999999986
|
|
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.8e-12 Score=139.04 Aligned_cols=167 Identities=19% Similarity=0.205 Sum_probs=115.1
Q ss_pred eEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcCeEEEEccCcccccccHHHHH---ccCCCCCh---hhHH
Q 000746 662 LDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISWIFNATLRKNI---LFGSEFDP---AKYW 735 (1303)
Q Consensus 662 l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~~iayv~Q~p~l~~~TireNI---~~g~~~~~---~~~~ 735 (1303)
+.+.+||.++|+|++|+|||||++.+.+.++...+... .+.++.+++-.--..+.+.| .+..+.|+ .++.
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~----~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~ 86 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVY----LIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQ 86 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeE----EEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHH
Confidence 57889999999999999999999999998876432222 24455666433222333333 11222221 1121
Q ss_pred ---HHHHHHh-----------hHHHhhcCCCCCCccccCCCCCCchHH--------HHHHHHHHHHHH------------
Q 000746 736 ---KTVDVSA-----------LQHDLDLLPDRDLTEIGERGVNISGGQ--------KQRVSMARAVFN------------ 781 (1303)
Q Consensus 736 ---~vl~~~~-----------l~~~i~~lp~g~~T~ige~G~~LSGGQ--------kQRiaLARAl~~------------ 781 (1303)
.+.+.+. +-+++..+++++++.+|+.|.++|||| |||+++||++.+
T Consensus 87 ~~~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l~T~~~ 166 (249)
T cd01128 87 VAEMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTIIATALV 166 (249)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEeeehee
Confidence 1111111 124577899999999999999999999 999999999421
Q ss_pred -------HHHhHhc--CCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhcchHHHHHH
Q 000746 782 -------SCIKEEL--RGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLM 837 (1303)
Q Consensus 782 -------~~i~~~~--~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~ 837 (1303)
+.+.+.+ .++|.|+++|++....++|.|.+|+.|++ +++++.+++.|..+.
T Consensus 167 d~~~~~~~~i~~~~~~~~~~~ivls~~la~~~~~paI~vl~s~sr-----~~~ll~~~~~~~~~~ 226 (249)
T cd01128 167 DTGSRMDDVIFEEFKGTGNMELVLDRRLAERRIFPAIDILKSGTR-----KEELLLDPEELQRMW 226 (249)
T ss_pred cCCCcccchHHHHHhcCCCcEEEEchHHhhCCCCCeEEEcCCCCc-----cchhhCCHHHHHHHH
Confidence 1222222 46899999999999999999999999997 567776666666553
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2e-12 Score=137.96 Aligned_cols=59 Identities=27% Similarity=0.447 Sum_probs=55.6
Q ss_pred eEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1242 SIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1242 ~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
.+++++|+.+|.. ..||+||||+|++||.|+||||||||||||++++.|+.+|++|+|.
T Consensus 3 ~l~i~~v~~~f~~--~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~ 61 (248)
T COG1116 3 LLEIEGVSKSFGG--VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVL 61 (248)
T ss_pred eEEEEeeEEEeCc--eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 5899999999975 4799999999999999999999999999999999999999999975
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.3e-12 Score=139.58 Aligned_cols=59 Identities=32% Similarity=0.599 Sum_probs=56.1
Q ss_pred eEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1242 SIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1242 ~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
.|+++|++++|+.+ +||+||||+|++||.+|||||.|||||||+++++++..|.+|+|.
T Consensus 4 ~i~v~nl~v~y~~~--~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~ 62 (254)
T COG1121 4 MIEVENLTVSYGNR--PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIK 62 (254)
T ss_pred EEEEeeeEEEECCE--eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEE
Confidence 59999999999754 599999999999999999999999999999999999999999986
|
|
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.8e-12 Score=134.28 Aligned_cols=127 Identities=25% Similarity=0.259 Sum_probs=80.7
Q ss_pred eeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcC-e-E--EEEccCcccccccHHHHHccCCCCChhhH
Q 000746 659 NINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRG-T-V--AYVPQISWIFNATLRKNILFGSEFDPAKY 734 (1303)
Q Consensus 659 ~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~-~-i--ayv~Q~p~l~~~TireNI~~g~~~~~~~~ 734 (1303)
+..+...++.+.+|+||||||||+++.+|.-.+. |.....+. . . .+-...++--+++|+ |.|
T Consensus 14 ~~~~~~~~~~~~~i~G~NGsGKSnil~Ai~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~f--------- 79 (178)
T cd03239 14 DETVVGGSNSFNAIVGPNGSGKSNIVDAICFVLG---GKAAKLRRGSLLFLAGGGVKAGINSASVE--ITF--------- 79 (178)
T ss_pred CCEEecCCCceEEEECCCCCCHHHHHHHHHHHcC---cccccccCcchhhhcccccCCCCceEEEE--EEE---------
Confidence 3344444444999999999999999999864332 11111110 0 0 011111111111111 111
Q ss_pred HHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH---------------------------HHHhHh
Q 000746 735 WKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN---------------------------SCIKEE 787 (1303)
Q Consensus 735 ~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~---------------------------~~i~~~ 787 (1303)
+..+..+|+|+.|++ ||||||||++||||+.. +.+.+.
T Consensus 80 ---------~~~~~~~~~~~~~~~------LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~ 144 (178)
T cd03239 80 ---------DKSYFLVLQGKVEQI------LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEM 144 (178)
T ss_pred ---------ECceEEecCCcCccc------CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 223778999999998 99999999999998631 123333
Q ss_pred c-CCCEEEEEecCCCcccccCEEEEEeC
Q 000746 788 L-RGKTRILVTNQLHFLPHVDRIILVSE 814 (1303)
Q Consensus 788 ~-~~~TvilvtH~~~~l~~aD~ii~l~~ 814 (1303)
. +++|+|++||+.+.+..+|+++.++.
T Consensus 145 ~~~g~tiIiiSH~~~~~~~adrvi~i~~ 172 (178)
T cd03239 145 AKHTSQFIVITLKKEMFENADKLIGVLF 172 (178)
T ss_pred HhCCCEEEEEECCHHHHhhCCeEEEEEE
Confidence 2 35899999999999999999999964
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.9e-11 Score=131.55 Aligned_cols=138 Identities=12% Similarity=0.113 Sum_probs=86.6
Q ss_pred cceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCC-----Cce----E---EEcCeEEEEccCcccccccHHHHHc
Q 000746 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLK-----DAS----V---VIRGTVAYVPQISWIFNATLRKNIL 724 (1303)
Q Consensus 657 L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~-----g~~----~---~~~~~iayv~Q~p~l~~~TireNI~ 724 (1303)
++++++++.+| +.+|+||||||||||+.+|.-.+.... |.. + .....|.+..|+.-++. |
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~-----~-- 83 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDA-----N-- 83 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccC-----C--
Confidence 46778888887 889999999999999999874332211 110 0 01234666666654443 2
Q ss_pred cCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHH----H-------------------
Q 000746 725 FGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF----N------------------- 781 (1303)
Q Consensus 725 ~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~----~------------------- 781 (1303)
+..... ....++.++. . ....+...+||||||||++||||+. .
T Consensus 84 ---~~~~~~------~~~~~~~l~~-~----~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~ 149 (198)
T cd03276 84 ---PLCVLS------QDMARSFLTS-N----KAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNR 149 (198)
T ss_pred ---cCCHHH------HHHHHHHhcc-c----cccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHH
Confidence 111111 1122222322 1 1123456789999999999999872 1
Q ss_pred ----HHHhHhcC----CCEEEEEecCCCcccccCEEEEEeCCE
Q 000746 782 ----SCIKEELR----GKTRILVTNQLHFLPHVDRIILVSEGM 816 (1303)
Q Consensus 782 ----~~i~~~~~----~~TvilvtH~~~~l~~aD~ii~l~~G~ 816 (1303)
+.+.+..+ ++|++++||+++.+...|+|-+|..|+
T Consensus 150 ~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~ 192 (198)
T cd03276 150 KISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMKD 192 (198)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence 22333322 358999999999999999999998753
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.8e-12 Score=147.01 Aligned_cols=177 Identities=23% Similarity=0.348 Sum_probs=112.5
Q ss_pred CCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhc---CCCCCCCceEEEcCeEEEEccCccc
Q 000746 638 LPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLG---ELPPLKDASVVIRGTVAYVPQISWI 714 (1303)
Q Consensus 638 ~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg---~~~~~~g~~~~~~~~iayv~Q~p~l 714 (1303)
..+|.+++.+.+|.+ +..|++-++++..|..+++||+||+|||||+++|.. ..-|.+.. +++.-....|+ -+
T Consensus 78 ~~Di~~~~fdLa~G~-k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE---~~g~~t~~~~~-~l 152 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYGG-KILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQE---VRGDDTEALQS-VL 152 (582)
T ss_pred ccceeeeeeeeeecc-hhhhcCCceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCchhh---eeccchHHHhh-hh
Confidence 346888899999975 468999999999999999999999999999999997 11111110 11111111111 12
Q ss_pred ccccHHHHHccCC-CC----C-hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHHHH-----
Q 000746 715 FNATLRKNILFGS-EF----D-PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFNSC----- 783 (1303)
Q Consensus 715 ~~~TireNI~~g~-~~----~-~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~~~----- 783 (1303)
-.++-|.-.+.-. +. + ++-|.+++.-.+..++....|- .+||||=|-|++||||+|.+.
T Consensus 153 ~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt----------~slSGGWrMrlaLARAlf~~pDlLLL 222 (582)
T KOG0062|consen 153 ESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPT----------KSLSGGWRMRLALARALFAKPDLLLL 222 (582)
T ss_pred hccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccc----------cccCcchhhHHHHHHHHhcCCCEEee
Confidence 2233333332211 00 1 1122224444444444444442 469999999999999987531
Q ss_pred --------------HhHhc--CCCEEEEEecCCCcccc-cCEEEEEeCCEEE-EecCHHHHHhc
Q 000746 784 --------------IKEEL--RGKTRILVTNQLHFLPH-VDRIILVSEGMIK-EEGSFEELSKH 829 (1303)
Q Consensus 784 --------------i~~~~--~~~TvilvtH~~~~l~~-aD~ii~l~~G~i~-~~g~~~~l~~~ 829 (1303)
+.+.+ ...|+|+|+|+-.++.. |..||.+++-++. ..|++++..+.
T Consensus 223 DEPTNhLDv~av~WLe~yL~t~~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk~ 286 (582)
T KOG0062|consen 223 DEPTNHLDVVAVAWLENYLQTWKITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVKT 286 (582)
T ss_pred cCCcccchhHHHHHHHHHHhhCCceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHHh
Confidence 22333 24799999999999976 7888888876653 46777776543
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.7e-12 Score=137.38 Aligned_cols=59 Identities=32% Similarity=0.642 Sum_probs=55.6
Q ss_pred eEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1242 SIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1242 ~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
.++.+|++|+|+. .++|+|+||+|++||.++|+||.|||||||+++|.|+..|.+|+|+
T Consensus 2 ~L~~~~ls~~y~~--~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~ 60 (258)
T COG1120 2 MLEVENLSFGYGG--KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVL 60 (258)
T ss_pred eeEEEEEEEEECC--eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEE
Confidence 4789999999963 5799999999999999999999999999999999999999999985
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.8e-12 Score=134.06 Aligned_cols=60 Identities=30% Similarity=0.420 Sum_probs=54.7
Q ss_pred EEEEEEEEEeCCCC--CCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1243 IKFEDVVLRYRPEL--PPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1243 I~f~nVsf~Y~~~~--~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+++||+..|..+. .++|+|+||+|++||.|||+||||||||||+++|-++-.|++|.|.
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~ 63 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVL 63 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEE
Confidence 67999999996443 3699999999999999999999999999999999999999999964
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.6e-12 Score=137.87 Aligned_cols=60 Identities=37% Similarity=0.577 Sum_probs=55.5
Q ss_pred EEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1243 I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+++|++++|+++..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 61 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIR 61 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 789999999964334699999999999999999999999999999999999999999985
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.9e-12 Score=132.48 Aligned_cols=61 Identities=23% Similarity=0.406 Sum_probs=55.7
Q ss_pred eEEEEEEEEEeCCCC--CCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1242 SIKFEDVVLRYRPEL--PPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1242 ~I~f~nVsf~Y~~~~--~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
-++.+|+++.|+... .++||||||+|.+||++||||+||||||||.++|.++-.|++|+|+
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~ 65 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSIL 65 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEE
Confidence 478999999996432 1599999999999999999999999999999999999999999985
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1e-11 Score=143.64 Aligned_cols=62 Identities=16% Similarity=0.299 Sum_probs=56.7
Q ss_pred ceEEEEEEEEEeCCC---CCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1241 GSIKFEDVVLRYRPE---LPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1241 G~I~f~nVsf~Y~~~---~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
.-|+++||+|+|++. ..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~ 84 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQ 84 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEE
Confidence 359999999999643 23699999999999999999999999999999999999999999985
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.6e-12 Score=138.29 Aligned_cols=60 Identities=25% Similarity=0.465 Sum_probs=55.2
Q ss_pred EEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1243 I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+++||+++|+++..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 60 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY 60 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 579999999964324799999999999999999999999999999999999999999985
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.25 E-value=1e-11 Score=136.93 Aligned_cols=62 Identities=65% Similarity=1.125 Sum_probs=57.7
Q ss_pred ceEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1241 GSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1241 G~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+|+++|++++|+++..++|+|+||+|++||.+||+|++|||||||+++|.|++.|++|+|.
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 62 (221)
T cd03244 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSIL 62 (221)
T ss_pred CcEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEE
Confidence 57999999999975445799999999999999999999999999999999999999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=99.25 E-value=9.3e-12 Score=132.16 Aligned_cols=60 Identities=30% Similarity=0.544 Sum_probs=55.4
Q ss_pred EEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1243 I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+++|++++|+...+++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~ 60 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEE
Confidence 579999999965434799999999999999999999999999999999999999999985
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=9e-12 Score=135.38 Aligned_cols=60 Identities=27% Similarity=0.443 Sum_probs=55.9
Q ss_pred EEEEEEEEEeCCC---CCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1243 IKFEDVVLRYRPE---LPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1243 I~f~nVsf~Y~~~---~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+|+||+..|... ..++|+||||+|++||..||||+||||||||++++-|+-+|++|+|.
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~ 64 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVF 64 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEE
Confidence 8999999999752 24699999999999999999999999999999999999999999985
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.7e-12 Score=130.16 Aligned_cols=58 Identities=26% Similarity=0.505 Sum_probs=54.3
Q ss_pred EEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1243 I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+++||+++|++ .++|+|+||+|+|||.+||+|++|||||||+++|.|+++|++|+|.
T Consensus 1 l~~~~l~~~~~~--~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~ 58 (163)
T cd03216 1 LELRGITKRFGG--VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEIL 58 (163)
T ss_pred CEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence 579999999964 3699999999999999999999999999999999999999999875
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=99.24 E-value=1e-11 Score=130.06 Aligned_cols=59 Identities=31% Similarity=0.466 Sum_probs=54.9
Q ss_pred EEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1243 I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+++|++++|+++ +++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.
T Consensus 1 i~~~~~~~~~~~~-~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 59 (166)
T cd03223 1 IELENLSLATPDG-RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIG 59 (166)
T ss_pred CEEEEEEEEcCCC-CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence 5799999999643 4699999999999999999999999999999999999999999985
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=9.9e-12 Score=130.54 Aligned_cols=60 Identities=25% Similarity=0.509 Sum_probs=56.4
Q ss_pred ceEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1241 GSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1241 G~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
--|++++|+++|.+ ..||+||||+|++||.+||+|+||||||||++++.++..|++|+|.
T Consensus 7 ~~I~vr~v~~~fG~--~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~ 66 (263)
T COG1127 7 PLIEVRGVTKSFGD--RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEIL 66 (263)
T ss_pred ceEEEeeeeeecCC--EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEE
Confidence 36999999999954 4699999999999999999999999999999999999999999985
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.1e-11 Score=136.40 Aligned_cols=60 Identities=32% Similarity=0.445 Sum_probs=54.9
Q ss_pred EEEEEEEEEeCCCC--CCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1243 IKFEDVVLRYRPEL--PPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1243 I~f~nVsf~Y~~~~--~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+++||+++|+++. .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~ 62 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVR 62 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEE
Confidence 57899999996421 4699999999999999999999999999999999999999999985
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.5e-11 Score=140.61 Aligned_cols=61 Identities=23% Similarity=0.477 Sum_probs=55.8
Q ss_pred eEEEEEEEEEeCCCC---CCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1242 SIKFEDVVLRYRPEL---PPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1242 ~I~f~nVsf~Y~~~~---~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
.|+++||+++|+++. .++|+||||+|++||.+||+|++|||||||+++|.|+++|++|+|.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~ 65 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVT 65 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence 389999999996432 3699999999999999999999999999999999999999999985
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.7e-11 Score=138.18 Aligned_cols=64 Identities=44% Similarity=0.756 Sum_probs=59.2
Q ss_pred CcceEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1239 SSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1239 ~~G~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
..|.|+++|++++|++...++|+|+||+|+|||.+||+|++|||||||+++|.|+++|++|+|+
T Consensus 16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 79 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIV 79 (257)
T ss_pred CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEE
Confidence 5689999999999965434799999999999999999999999999999999999999999985
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.7e-11 Score=129.42 Aligned_cols=60 Identities=32% Similarity=0.665 Sum_probs=55.4
Q ss_pred EEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1243 I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+++|++++|+++..++++|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~ 60 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEE
Confidence 579999999975434699999999999999999999999999999999999999999985
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.5e-11 Score=134.83 Aligned_cols=59 Identities=31% Similarity=0.478 Sum_probs=54.6
Q ss_pred EEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1243 I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+++|++++|+.+ +++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.
T Consensus 1 l~~~~l~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 59 (214)
T cd03292 1 IEFINVTKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIR 59 (214)
T ss_pred CEEEEEEEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE
Confidence 5789999999643 4699999999999999999999999999999999999999999984
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.8e-11 Score=140.00 Aligned_cols=60 Identities=30% Similarity=0.547 Sum_probs=55.4
Q ss_pred EEEEEEEEEeCCCC---CCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1243 IKFEDVVLRYRPEL---PPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1243 I~f~nVsf~Y~~~~---~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+|+||+++|+++. +++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|+
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 64 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVT 64 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEE
Confidence 78999999996432 2699999999999999999999999999999999999999999985
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.7e-11 Score=136.24 Aligned_cols=61 Identities=31% Similarity=0.544 Sum_probs=56.2
Q ss_pred eEEEEEEEEEeCCCC--CCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1242 SIKFEDVVLRYRPEL--PPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1242 ~I~f~nVsf~Y~~~~--~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
-|+++||+++|+++. .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 67 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVI 67 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEE
Confidence 489999999996432 4699999999999999999999999999999999999999999985
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.9e-11 Score=132.93 Aligned_cols=60 Identities=33% Similarity=0.448 Sum_probs=55.5
Q ss_pred EEEEEEEEEeCCCC---CCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1243 IKFEDVVLRYRPEL---PPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1243 I~f~nVsf~Y~~~~---~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+++||+++|++.. +++|+|+||+|++||.++|+|++|||||||+++|.|+++|++|+|.
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~ 63 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVS 63 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEE
Confidence 57999999997542 3699999999999999999999999999999999999999999986
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.1e-11 Score=133.77 Aligned_cols=59 Identities=29% Similarity=0.490 Sum_probs=54.9
Q ss_pred EEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1243 I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+++|++++|+++ .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.
T Consensus 2 l~~~~l~~~~~~~-~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~ 60 (214)
T TIGR02673 2 IEFHNVSKAYPGG-VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVR 60 (214)
T ss_pred EEEEeeeEEeCCC-ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 7899999999533 4799999999999999999999999999999999999999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.9e-11 Score=124.61 Aligned_cols=58 Identities=33% Similarity=0.621 Sum_probs=54.2
Q ss_pred EEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1243 I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
++++|++++|.+ .++|+|+||++++||.++|+|++|||||||+++|.|+++|++|+|.
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~ 58 (144)
T cd03221 1 IELENLSKTYGG--KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVT 58 (144)
T ss_pred CEEEEEEEEECC--ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEE
Confidence 478999999964 3699999999999999999999999999999999999999999985
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.1e-11 Score=135.19 Aligned_cols=60 Identities=23% Similarity=0.523 Sum_probs=55.0
Q ss_pred EEEEEEEEEeCCCC--CCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1243 IKFEDVVLRYRPEL--PPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1243 I~f~nVsf~Y~~~~--~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+++||+++|++.. .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 63 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSII 63 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 78999999996431 2699999999999999999999999999999999999999999985
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.3e-11 Score=133.77 Aligned_cols=60 Identities=33% Similarity=0.557 Sum_probs=55.0
Q ss_pred EEEEEEEEEeCCCC--CCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1243 IKFEDVVLRYRPEL--PPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1243 I~f~nVsf~Y~~~~--~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+++||+++|++.. +++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 63 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFAT 63 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEE
Confidence 78999999996431 1699999999999999999999999999999999999999999985
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.4e-11 Score=132.62 Aligned_cols=60 Identities=28% Similarity=0.517 Sum_probs=57.1
Q ss_pred eEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1242 SIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1242 ~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
-|+++|++|+|.++ .++|+|+||+|++||.++|+|+||||||||+++|.+++.|++|+|.
T Consensus 3 ~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~ 62 (235)
T COG1122 3 MIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVL 62 (235)
T ss_pred eEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEE
Confidence 58999999999876 6899999999999999999999999999999999999999999984
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.1e-11 Score=132.19 Aligned_cols=61 Identities=28% Similarity=0.427 Sum_probs=55.8
Q ss_pred eEEEEEEEEEeCCC--CCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhccc---CCCCeee
Q 000746 1242 SIKFEDVVLRYRPE--LPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVE---LERGENI 1302 (1303)
Q Consensus 1242 ~I~f~nVsf~Y~~~--~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd---~~~G~I~ 1302 (1303)
.+.++||+|.|+.+ ..++|+|+||+|++||.+||+|++|||||||+++|.|+++ |++|+|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~ 68 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIH 68 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEE
Confidence 46899999999743 4579999999999999999999999999999999999999 8999885
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.5e-11 Score=138.28 Aligned_cols=61 Identities=28% Similarity=0.520 Sum_probs=56.0
Q ss_pred eEEEEEEEEEeCCC-CCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1242 SIKFEDVVLRYRPE-LPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1242 ~I~f~nVsf~Y~~~-~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
-|+++||+++|+.. ..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 65 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQII 65 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence 48999999999642 24699999999999999999999999999999999999999999985
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.6e-11 Score=138.75 Aligned_cols=60 Identities=28% Similarity=0.501 Sum_probs=55.5
Q ss_pred EEEEEEEEEeCCCC---CCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1243 IKFEDVVLRYRPEL---PPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1243 I~f~nVsf~Y~~~~---~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+++||+++|++.. .++|+||||+|++||.+||||++|||||||+++|.|+++|++|+|.
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~ 65 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKII 65 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEE
Confidence 89999999996432 3699999999999999999999999999999999999999999985
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.3e-11 Score=132.78 Aligned_cols=62 Identities=35% Similarity=0.632 Sum_probs=57.0
Q ss_pred ceEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1241 GSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1241 G~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+|+++|++++|+....++|+|+||+|++||.+||+|++|||||||+++|.++++|++|+|.
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~ 62 (220)
T cd03245 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVL 62 (220)
T ss_pred CeEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEE
Confidence 57999999999964334699999999999999999999999999999999999999999985
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.6e-11 Score=135.24 Aligned_cols=60 Identities=42% Similarity=0.765 Sum_probs=55.6
Q ss_pred EEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1243 I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+++||+++|+.+..++|+|+||+|++||.+||+|++|||||||+++|.|++.|++|+|.
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 60 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEE
Confidence 579999999965445799999999999999999999999999999999999999999985
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.7e-11 Score=131.23 Aligned_cols=58 Identities=24% Similarity=0.533 Sum_probs=54.6
Q ss_pred EEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1243 I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+++||+++|.+ .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~ 59 (200)
T PRK13540 2 LDVIELDFDYHD--QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEIL 59 (200)
T ss_pred EEEEEEEEEeCC--eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEE
Confidence 789999999964 3699999999999999999999999999999999999999999985
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.7e-11 Score=137.70 Aligned_cols=60 Identities=35% Similarity=0.546 Sum_probs=55.8
Q ss_pred eEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1242 SIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1242 ~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
-|+++||+++|+.+ .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.
T Consensus 4 ~l~~~~l~~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 63 (274)
T PRK13647 4 IIEVEDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVK 63 (274)
T ss_pred eEEEEEEEEEeCCC-CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEE
Confidence 48999999999633 4699999999999999999999999999999999999999999985
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.6e-11 Score=140.87 Aligned_cols=60 Identities=23% Similarity=0.438 Sum_probs=55.4
Q ss_pred EEEEEEEEEeCCC--CCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1243 IKFEDVVLRYRPE--LPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1243 I~f~nVsf~Y~~~--~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+++||+++|+.+ ..++|+||||+|++||.+||+|+||||||||+++|.|+++|++|+|.
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~ 63 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVI 63 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE
Confidence 7999999999632 24699999999999999999999999999999999999999999985
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.8e-11 Score=133.45 Aligned_cols=60 Identities=35% Similarity=0.546 Sum_probs=55.1
Q ss_pred EEEEEEEEEeCCCC--CCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1243 IKFEDVVLRYRPEL--PPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1243 I~f~nVsf~Y~~~~--~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+++||+++|+++. .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~ 63 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVL 63 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 68999999996421 3699999999999999999999999999999999999999999985
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.3e-11 Score=133.87 Aligned_cols=60 Identities=27% Similarity=0.419 Sum_probs=54.7
Q ss_pred EEEEEEEEEeCCCC--CCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1243 IKFEDVVLRYRPEL--PPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1243 I~f~nVsf~Y~~~~--~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+++|++++|+++. .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 62 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVL 62 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 57899999996421 4699999999999999999999999999999999999999999985
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.3e-11 Score=138.53 Aligned_cols=61 Identities=25% Similarity=0.455 Sum_probs=55.8
Q ss_pred eEEEEEEEEEeCCCC---CCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1242 SIKFEDVVLRYRPEL---PPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1242 ~I~f~nVsf~Y~~~~---~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
.|+++||+++|+++. .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~ 65 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIE 65 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEE
Confidence 389999999996432 2699999999999999999999999999999999999999999984
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.3e-11 Score=133.55 Aligned_cols=61 Identities=21% Similarity=0.370 Sum_probs=56.0
Q ss_pred eEEEEEEEEEeCCCC--CCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1242 SIKFEDVVLRYRPEL--PPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1242 ~I~f~nVsf~Y~~~~--~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
-|+++|++++|+++. .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~ 68 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVS 68 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEE
Confidence 599999999996532 2599999999999999999999999999999999999999999985
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.1e-11 Score=133.15 Aligned_cols=59 Identities=32% Similarity=0.522 Sum_probs=54.9
Q ss_pred EEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1243 I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+++||+++|+++ .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 60 (222)
T PRK10908 2 IRFEHVSKAYLGG-RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIW 60 (222)
T ss_pred EEEEeeEEEecCC-CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 7899999999533 4799999999999999999999999999999999999999999985
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.7e-11 Score=137.87 Aligned_cols=63 Identities=27% Similarity=0.417 Sum_probs=57.6
Q ss_pred cceEEEEEEEEEeCCCC---CCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1240 SGSIKFEDVVLRYRPEL---PPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1240 ~G~I~f~nVsf~Y~~~~---~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
.|.|+++|++++|++.. .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 69 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTI 69 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence 47899999999996432 2599999999999999999999999999999999999999999985
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1e-10 Score=156.45 Aligned_cols=80 Identities=18% Similarity=0.234 Sum_probs=65.0
Q ss_pred CCCCCCccccCCCCCCchHHHHHHHHHHHHHH--------------------------HHHhHhc-CCCEEEEEecCCCc
Q 000746 750 LPDRDLTEIGERGVNISGGQKQRVSMARAVFN--------------------------SCIKEEL-RGKTRILVTNQLHF 802 (1303)
Q Consensus 750 lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~--------------------------~~i~~~~-~~~TvilvtH~~~~ 802 (1303)
..-|+.+ +|..-.+|||||.|||-||+-+.+ +++.+.. +|.|||+|.|+++.
T Consensus 1686 vGLgYl~-LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~~~ 1764 (1809)
T PRK00635 1686 NGLGYLP-LGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDPAL 1764 (1809)
T ss_pred cCCCeee-CCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence 3445654 788899999999999999998532 1223322 68999999999999
Q ss_pred ccccCEEEEE------eCCEEEEecCHHHHHhcc
Q 000746 803 LPHVDRIILV------SEGMIKEEGSFEELSKHG 830 (1303)
Q Consensus 803 l~~aD~ii~l------~~G~i~~~g~~~~l~~~~ 830 (1303)
+..||+|+-| +.|+|+.+|+++++.+..
T Consensus 1765 i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~~~ 1798 (1809)
T PRK00635 1765 LKQADYLIEMGPGSGKTGGKILFSGPPKDISASK 1798 (1809)
T ss_pred HHhCCEEEEcCCCcccCCCEEEEEeCHHHHhhCC
Confidence 9999999999 368999999999998654
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=3e-11 Score=131.54 Aligned_cols=58 Identities=24% Similarity=0.388 Sum_probs=54.7
Q ss_pred EEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1243 I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+++||+++|++ ..+|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|+
T Consensus 3 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 60 (207)
T PRK13539 3 LEGEDLACVRGG--RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIK 60 (207)
T ss_pred EEEEeEEEEECC--eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 799999999964 3699999999999999999999999999999999999999999985
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.2e-11 Score=137.01 Aligned_cols=61 Identities=31% Similarity=0.487 Sum_probs=56.7
Q ss_pred eEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1242 SIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1242 ~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
.|+++|++++|+++..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~ 67 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIK 67 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence 5999999999964445799999999999999999999999999999999999999999985
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=3e-11 Score=136.92 Aligned_cols=59 Identities=24% Similarity=0.427 Sum_probs=55.5
Q ss_pred eEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1242 SIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1242 ~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
.|+++||+.+|.+. . ||+|+||+|+.||.++|||||||||||++++|.++.+|++|+|.
T Consensus 3 ~i~l~~v~K~yg~~-~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~ 61 (338)
T COG3839 3 ELELKNVRKSFGSF-E-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEIL 61 (338)
T ss_pred EEEEeeeEEEcCCc-e-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 69999999999643 2 99999999999999999999999999999999999999999985
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.7e-11 Score=128.41 Aligned_cols=45 Identities=36% Similarity=0.572 Sum_probs=43.7
Q ss_pred CccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1258 PVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1258 ~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
++||||||++++||++||||+.|||||||+++|.+.|+|++|+|.
T Consensus 41 ~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~ 85 (249)
T COG1134 41 WALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVK 85 (249)
T ss_pred EEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEE
Confidence 699999999999999999999999999999999999999999974
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.1e-11 Score=135.23 Aligned_cols=154 Identities=25% Similarity=0.318 Sum_probs=110.7
Q ss_pred eeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCce--------------------------
Q 000746 645 NGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDAS-------------------------- 698 (1303)
Q Consensus 645 ~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~-------------------------- 698 (1303)
++.-+|..+...|.++- ..++|+.++|+|+||-||||-++.|.|++.|.=|..
T Consensus 79 e~vHRYg~NgFkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~ 157 (591)
T COG1245 79 EVVHRYGVNGFKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLY 157 (591)
T ss_pred cceeeccCCceEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHH
Confidence 45666765544343322 346899999999999999999999999999865521
Q ss_pred ---EEEcCeEEEEccCcccccccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHH
Q 000746 699 ---VVIRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSM 775 (1303)
Q Consensus 699 ---~~~~~~iayv~Q~p~l~~~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaL 775 (1303)
+..-.++-||.--|-.+.|+++|-+.--.+ .....++++..+|+.-++ ..-..||||+-||+||
T Consensus 158 ~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~de--~g~~devve~l~L~nvl~-----------r~v~~LSGGELQr~aI 224 (591)
T COG1245 158 EGELRAVHKPQYVDLIPKVVKGKVGELLKKVDE--RGKFDEVVERLGLENVLD-----------RDVSELSGGELQRVAI 224 (591)
T ss_pred cCCcceecchHHHHHHHHHhcchHHHHHHhhhh--cCcHHHHHHHhcchhhhh-----------hhhhhcCchHHHHHHH
Confidence 111234667777888899999998753211 235566777666655432 2345699999999999
Q ss_pred HHHHHH-----------------------HHHhHhcC-CCEEEEEecCCCcccc-cCEEEEE
Q 000746 776 ARAVFN-----------------------SCIKEELR-GKTRILVTNQLHFLPH-VDRIILV 812 (1303)
Q Consensus 776 ARAl~~-----------------------~~i~~~~~-~~TvilvtH~~~~l~~-aD~ii~l 812 (1303)
|-|+.+ +.+++..+ +++||+|-|++..+.. +|.|-++
T Consensus 225 aa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~ 286 (591)
T COG1245 225 AAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHIL 286 (591)
T ss_pred HHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEE
Confidence 999643 34566666 7999999999999987 7887776
|
|
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=99.18 E-value=3e-11 Score=113.90 Aligned_cols=63 Identities=25% Similarity=0.351 Sum_probs=52.9
Q ss_pred CccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------EcCeEEEEccCcccccccHHHH
Q 000746 655 PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------IRGTVAYVPQISWIFNATLRKN 722 (1303)
Q Consensus 655 ~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------~~~~iayv~Q~p~l~~~TireN 722 (1303)
++|++++|++++|+.++|+||||||||||++++. +|.... .++.++|+||+ +|.+|||||
T Consensus 3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~~N 74 (107)
T cd00820 3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEIRLRLN 74 (107)
T ss_pred eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchhhHHhh
Confidence 5899999999999999999999999999999986 332211 23447888888 999999999
Q ss_pred Hcc
Q 000746 723 ILF 725 (1303)
Q Consensus 723 I~~ 725 (1303)
|.+
T Consensus 75 i~~ 77 (107)
T cd00820 75 IFL 77 (107)
T ss_pred cee
Confidence 988
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.1e-11 Score=136.69 Aligned_cols=60 Identities=32% Similarity=0.597 Sum_probs=55.4
Q ss_pred EEEEEEEEEeCCC-------CCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1243 IKFEDVVLRYRPE-------LPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1243 I~f~nVsf~Y~~~-------~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+++||+++|+++ ..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 69 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVS 69 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 7899999999631 34799999999999999999999999999999999999999999985
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.1e-11 Score=135.13 Aligned_cols=59 Identities=31% Similarity=0.575 Sum_probs=54.9
Q ss_pred EEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1243 I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+++||+++|+++ .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.
T Consensus 2 l~~~~l~~~~~~~-~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 60 (243)
T TIGR02315 2 LEVENLSKVYPNG-KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSIL 60 (243)
T ss_pred eEEEeeeeecCCC-cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEE
Confidence 7899999999623 4699999999999999999999999999999999999999999985
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.5e-11 Score=132.74 Aligned_cols=59 Identities=31% Similarity=0.504 Sum_probs=53.9
Q ss_pred EEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1244 KFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1244 ~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
+++|++++|+++..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~ 59 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVL 59 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence 47899999964324699999999999999999999999999999999999999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.9e-11 Score=120.79 Aligned_cols=61 Identities=28% Similarity=0.400 Sum_probs=53.6
Q ss_pred eEEEEEEEEEeCCC--CCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1242 SIKFEDVVLRYRPE--LPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1242 ~I~f~nVsf~Y~~~--~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
-|+.++++..-+.+ .-++||||+|.|++||+|||||+||||||||+..|.++-+|++|+|.
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~ 68 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVR 68 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEE
Confidence 47788887766433 23699999999999999999999999999999999999999999984
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.9e-11 Score=134.65 Aligned_cols=59 Identities=31% Similarity=0.504 Sum_probs=55.6
Q ss_pred eEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1242 SIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1242 ~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
.|+++|++++|+. .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.
T Consensus 12 ~l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~ 70 (257)
T PRK11247 12 PLLLNAVSKRYGE--RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELL 70 (257)
T ss_pred cEEEEEEEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEE
Confidence 5999999999963 4699999999999999999999999999999999999999999985
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.1e-11 Score=134.16 Aligned_cols=60 Identities=27% Similarity=0.479 Sum_probs=55.0
Q ss_pred EEEEEEEEEeCCC--CCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1243 IKFEDVVLRYRPE--LPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1243 I~f~nVsf~Y~~~--~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+++|++++|++. ..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~ 63 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVL 63 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 7899999999642 12799999999999999999999999999999999999999999985
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.3e-11 Score=127.30 Aligned_cols=58 Identities=28% Similarity=0.545 Sum_probs=54.0
Q ss_pred EEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1243 I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
++++|++++|+. .++|+|+||++++||.+||+|++|||||||+++|.|+++|++|+|.
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~ 58 (173)
T cd03230 1 IEVRNLSKRYGK--KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIK 58 (173)
T ss_pred CEEEEEEEEECC--eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence 478999999963 3699999999999999999999999999999999999999999984
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.9e-11 Score=136.25 Aligned_cols=61 Identities=28% Similarity=0.532 Sum_probs=56.6
Q ss_pred eEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1242 SIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1242 ~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
.|+++|++++|+++..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~ 67 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIF 67 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE
Confidence 5999999999975434699999999999999999999999999999999999999999985
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.3e-11 Score=128.83 Aligned_cols=61 Identities=30% Similarity=0.419 Sum_probs=56.3
Q ss_pred eEEEEEEEEEeCCC----CCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcc--cCCCCeee
Q 000746 1242 SIKFEDVVLRYRPE----LPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIV--ELERGENI 1302 (1303)
Q Consensus 1242 ~I~f~nVsf~Y~~~----~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~y--d~~~G~I~ 1302 (1303)
.|+++||+++|+.. ..++|+|+||+|++||.+||+|++|||||||+++|.|++ +|++|+|.
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~ 69 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVL 69 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEE
Confidence 58999999999642 247999999999999999999999999999999999999 99999985
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.5e-11 Score=132.53 Aligned_cols=61 Identities=41% Similarity=0.825 Sum_probs=56.5
Q ss_pred ceEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1241 GSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1241 G~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+|+++|++++|.++ .++|+|+||+|++||.+||+|++|||||||+++|.+++.|++|+|.
T Consensus 1 ~~l~~~~l~~~~~~~-~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 61 (229)
T cd03254 1 GEIEFENVNFSYDEK-KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQIL 61 (229)
T ss_pred CeEEEEEEEEecCCC-CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEE
Confidence 579999999999632 3699999999999999999999999999999999999999999985
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.8e-11 Score=134.99 Aligned_cols=58 Identities=22% Similarity=0.480 Sum_probs=54.6
Q ss_pred EEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1243 I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+++|++++|++ .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.
T Consensus 2 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 59 (255)
T PRK11248 2 LQISHLYADYGG--KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSIT 59 (255)
T ss_pred EEEEEEEEEeCC--eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 789999999953 4699999999999999999999999999999999999999999985
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 1303 | ||||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 5e-44 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 2e-30 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 2e-30 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-29 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 2e-29 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 2e-29 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 2e-29 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 2e-28 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 3e-28 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 8e-28 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 2e-27 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 6e-27 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 6e-27 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 1e-25 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 2e-19 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 2e-06 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 6e-19 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 2e-10 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 2e-17 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 6e-17 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 1e-16 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 4e-16 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 5e-07 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-15 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-04 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-15 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-04 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 3e-15 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 1e-04 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 3e-15 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 8e-05 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 4e-15 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 7e-15 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 6e-06 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 2e-13 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 8e-05 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 4e-13 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 7e-12 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 2e-12 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 4e-05 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 2e-12 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 3e-05 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 2e-12 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 4e-05 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 2e-12 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 4e-05 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 3e-12 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 5e-05 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 5e-12 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 4e-05 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 5e-12 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 4e-05 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 9e-10 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-09 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 1e-08 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 3e-08 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 6e-08 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 8e-08 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 2e-07 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 3e-07 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 1e-05 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 2e-05 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-05 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 6e-05 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 2e-04 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 2e-04 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 3e-04 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 4e-04 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 4e-04 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 6e-04 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 6e-04 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 7e-04 |
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1303 | |||
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 1e-104 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 1e-12 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 1e-103 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 5e-12 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 1e-101 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 4e-14 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 2e-68 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 2e-37 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 2e-23 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 3e-53 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-31 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-52 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 5e-31 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 1e-47 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 2e-30 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 3e-43 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 3e-28 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 3e-43 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 5e-19 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 1e-34 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 7e-24 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 3e-33 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 1e-14 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 1e-32 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 2e-26 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 2e-32 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 9e-11 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 2e-28 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 3e-11 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 2e-27 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 4e-14 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 8e-25 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 4e-09 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 2e-22 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 1e-07 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 2e-18 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 2e-07 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 9e-16 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 2e-06 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 1e-14 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 5e-08 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 5e-14 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 1e-08 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 1e-04 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 2e-04 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 4e-13 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 9e-13 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 2e-07 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 7e-05 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 1e-04 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 9e-12 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 7e-06 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 5e-04 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 8e-04 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 6e-11 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 6e-05 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 1e-10 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 8e-09 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 6e-04 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 1e-09 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 1e-08 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 2e-08 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 2e-08 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 1e-04 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 2e-08 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 1e-04 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 8e-08 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-07 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 4e-07 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 1e-05 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 4e-05 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 6e-07 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 9e-07 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 1e-06 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 3e-05 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 4e-05 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 2e-04 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 2e-04 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 2e-04 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 2e-04 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 3e-04 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 5e-04 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 8e-04 |
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 329 bits (845), Expect = e-104
Identities = 99/235 (42%), Positives = 138/235 (58%), Gaps = 28/235 (11%)
Query: 640 AVSIKNGNFSWD-SKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDAS 698
+++++N F+W S PTL+ I IP G+LVA+VG G GK+SL+SA+L E+ ++
Sbjct: 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVE-GH 61
Query: 699 VVIRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEI 758
V I+G+VAYVPQ +WI N +LR+NILFG + + Y + AL DL++LP D TEI
Sbjct: 62 VAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEI 121
Query: 759 GERGVNISGGQKQRVSMARAV------------------------FNSCI--KEELRGKT 792
GE+GVN+SGGQKQRVS+ARAV F + I K L+ KT
Sbjct: 122 GEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKT 181
Query: 793 RILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLMENAGKMEEME 847
RILVT+ + +LP VD II++S G I E GS++EL F + +
Sbjct: 182 RILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFLRTYASHHHHH 236
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 68.3 bits (168), Expect = 1e-12
Identities = 19/60 (31%), Positives = 32/60 (53%)
Query: 1241 GSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
SI + + PP L+G++F++ V +VG+ G GKSS+L+AL ++ G
Sbjct: 2 NSITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 61
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 328 bits (842), Expect = e-103
Identities = 73/283 (25%), Positives = 123/283 (43%), Gaps = 30/283 (10%)
Query: 610 ANVSLQRLEELLLAEERILMPNPPLEPELPAVSIKNGNFSWDSKS----PTLSNINLDIP 665
V ++ + L S + + S+ + S P L +IN I
Sbjct: 3 TEVVMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTPVLKDINFKIE 62
Query: 666 VGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISWIFNATLRKNILF 725
G L+A+ G TG GKTSL+ ++GEL P + + G +++ Q SWI T+++NI+
Sbjct: 63 RGQLLAVAGSTGAGKTSLLMMIMGELEPSE-GKIKHSGRISFCSQNSWIMPGTIKENII- 120
Query: 726 GSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAV------ 779
G +D +Y + L+ D+ ++D +GE G+ +SGGQ+ R+S+ARAV
Sbjct: 121 GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADL 180
Query: 780 ------------------FNSCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEG 821
F SC+ + + KTRILVT+++ L D+I+++ EG G
Sbjct: 181 YLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYG 240
Query: 822 SFEELSKHGRLFQKLMENAGKMEEMEEREEKDDSINSNQEVSK 864
+F EL F + ++ + S
Sbjct: 241 TFSELQNLRPDFSSKLMGCDSFDQFSAERRNSILTETLHRFSL 283
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 5e-12
Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 6/93 (6%)
Query: 1210 AVERVGTYIDLPSE--APGMVESNRPPPAWPSSGSIKFEDVVLRYRPELPPVLHGLSFTV 1267
+E V + + ++N S+ F + L PVL ++F +
Sbjct: 6 VMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLG----TPVLKDINFKI 61
Query: 1268 SPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
+ + + G TGAGK+S+L + +E G+
Sbjct: 62 ERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK 94
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 321 bits (825), Expect = e-101
Identities = 71/223 (31%), Positives = 115/223 (51%), Gaps = 26/223 (11%)
Query: 640 AVSIKNGNFSWD-SKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDAS 698
V ++N W+ +P L +IN I G L+A+ G TG GKTSL+ ++GEL P +
Sbjct: 6 EVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE-GK 64
Query: 699 VVIRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEI 758
+ G +++ Q SWI T+++NI+FG +D +Y + L+ D+ ++D +
Sbjct: 65 IKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVL 124
Query: 759 GERGVNISGGQKQRVSMARAV------------------------FNSCIKEELRGKTRI 794
GE G+ +SGGQ+ R+S+ARAV F SC+ + + KTRI
Sbjct: 125 GEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRI 184
Query: 795 LVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLM 837
LVT+++ L D+I+++ EG G+F EL F +
Sbjct: 185 LVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKL 227
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 72.2 bits (178), Expect = 4e-14
Identities = 16/62 (25%), Positives = 32/62 (51%)
Query: 1239 SSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELER 1298
++ + E+V + PVL ++F + + + + G TGAGK+S+L + +E
Sbjct: 3 TTTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE 62
Query: 1299 GE 1300
G+
Sbjct: 63 GK 64
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 251 bits (644), Expect = 2e-68
Identities = 177/998 (17%), Positives = 364/998 (36%), Gaps = 105/998 (10%)
Query: 372 LIFVGVSFGVLTEAQYFQNV-W-----RVGFRLRSTLVAAIFRKTLRLTHEARKGF---- 421
+ G+ GVL Y Q W R ++R AI + + G+
Sbjct: 112 YYYTGIGAGVLI-VAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEI--------GWFDVH 162
Query: 422 PSGKVTNMITTDANALQQ-ISQQLHGLWSAPFRITLSMVLLYQQLGVASLLGSLMLVLMV 480
G++ +T D + + + I ++ + A ++ + + +L+ + ++
Sbjct: 163 DVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLG 222
Query: 481 PLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELS 540
+ T + L + ++ E+LAA+ TV + +K R + ++
Sbjct: 223 LSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKR 282
Query: 541 WFRKAQFLSAFNSFILNSIPVVVTVVSF--GTFTLLGGDLTPARAFTSLSLFAVLRFPLN 598
K + + + ++F GT ++ + + + T + F +
Sbjct: 283 LGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVG 342
Query: 599 MLPNLLSQVVNANVSLQRLEELLLAEERILMPNPP---LEPELPAVSIKNGNFSWDSKS- 654
+ NA + + +++ + I + + + KN +FS+ S+
Sbjct: 343 QASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKE 402
Query: 655 -PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAML-------GELP----PLKDASVV-I 701
L +NL + G VA+VG +G GK++ V M G + ++ +V +
Sbjct: 403 VQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYL 462
Query: 702 RGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHD-LDLLPDRDLTEIGE 760
R + V Q +F T+ +NI +G E + A +D + LP + T +GE
Sbjct: 463 REIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGE 522
Query: 761 RGVNISGGQKQRVSMARA-----------------------VFNSCIKEELRGKTRILVT 797
RG +SGGQKQR+++ARA V + + + G+T I++
Sbjct: 523 RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIA 582
Query: 798 NQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLME--NAGKMEEMEEREEKDDS 855
++L + + D I G+I E+G+ +EL + ++ KL+ AG E+ K
Sbjct: 583 HRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQTAGNEIELGNEACKSKD 642
Query: 856 INSNQEVSKPVANRAVQVNEFPKNESYTKKGKRGRSVLVKQEERETGIVSGSVLTRYKNA 915
N ++S + ++ + + + + + + S + + N+
Sbjct: 643 EIDNLDMSSKDSGSSLIRRRSTRKSICGPHDQDRKLSTKEALDEDVPPASFWRILKL-NS 701
Query: 916 LGGPWVIMILFACYLS-----TEVLRISSSTWLSFWTDQSTSKNYNPGFYIAIYTILAFG 970
P+ ++ +F ++ + S + ++ N + ++ IL
Sbjct: 702 TEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGII 761
Query: 971 QVTVTLLNSYWLIISSLRAAKRLHDSMLNSILRAPMLFFHT--NPIGRVINRFSRDLGDI 1028
L + + KRL + S+LR + +F N G + R + D
Sbjct: 762 SFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDA--- 818
Query: 1029 DRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLW-------AIMPLLILFYAAYLYYQST 1081
V + ++Q ++ I+S I W AI+P++ + + S
Sbjct: 819 -AQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSG 877
Query: 1082 AREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSN 1141
+K + S A EA+ T+ + + + +S+ R
Sbjct: 878 Q-ALKDKKELEGSGKIAT--EAIENFRTVVSLTREQKFETMYAQSLQIPYR---NAMKKA 931
Query: 1142 RWLTIRLETLGGIMIWLIA-TFAV----MQNGRAENQVAFASTMGLLLSYTLNITNLLSG 1196
I +M + A F + + ++ + + + S
Sbjct: 932 HVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFG-AMAVGQVSS- 989
Query: 1197 VLRQASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSGSIKFEDVVLRY--RP 1254
++A S + + R+ I+ E P G+++F VV Y RP
Sbjct: 990 FAPDYAKATVSASHIIRI---IEKTPEIDSYSTQGLKPNM--LEGNVQFSGVVFNYPTRP 1044
Query: 1255 ELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFR 1292
+P VL GLS V + + +VG +G GKS+++ L R
Sbjct: 1045 SIP-VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLER 1081
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 152 bits (387), Expect = 2e-37
Identities = 112/642 (17%), Positives = 238/642 (37%), Gaps = 84/642 (13%)
Query: 279 KPITEKDVWKLDTWDQTEILIEKFHRCWIEESQRSKPWLLRALNNSFGGRFWLGGLFKIG 338
I + K + E+ + W + LN++ F +G I
Sbjct: 657 SLIRRRSTRKSICGPHDQDRKLSTKEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAII 716
Query: 339 NDLSQFVGPVLLNHLLQSMQRGDPA----WIGYIYAFLIFVGVSFGVLTEAQYFQNVW-- 392
N Q V+ + ++ G P +++ L+F+ + + Q
Sbjct: 717 NGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFS-LLFLILGIISFI-TFFLQGFTFG 774
Query: 393 RVGFRLRSTLVAAIFRKTLRLTHE--ARKGFPSGKVTNMITTDANALQQISQQLHGLWSA 450
+ G L L +F+ LR +G +T + DA ++ + +
Sbjct: 775 KAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAV--- 831
Query: 451 PFRITLSMVLLYQQLGVASLLG---SLMLVLMVPL---QTFIISK-MRKLTKEGLQWTDR 503
I ++ L + ++ + G +L+L+ +VP+ + K + + + +
Sbjct: 832 ---IFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEG 888
Query: 504 RVSLTNEILAAMDTVKCYAWEKSFQSR-VQSIRDDELSWFRKAQFLSAFNSFILNSIPVV 562
+ E + TV E+ F++ QS++ + +KA SF ++
Sbjct: 889 SGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFT-QAMMYF 947
Query: 563 VTVVSF--GTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEEL 620
+F G + + +T S + + + A VS + +
Sbjct: 948 SYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRI 1007
Query: 621 LLAEERILMPNPPLEPELPA-----VSIKNGNFSWDS--KSPTLSNINLDIPVGSLVAIV 673
+ I + + P V F++ + P L ++L++ G +A+V
Sbjct: 1008 IEKTPEI--DSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALV 1065
Query: 674 GGTGEGKTSLVS-------AMLGEL----PPLKDASVV-IRGTVAYVPQISWIFNATLRK 721
G +G GK+++V M G + +K +V +R + V Q +F+ ++ +
Sbjct: 1066 GSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAE 1125
Query: 722 NILFGSEFDPAKYWKTVD--VSALQ----HD-LDLLPDRDLTEIGERGVNISGGQKQRVS 774
NI +G + + V A + H +D LPD+ T +G++G +SGGQKQR++
Sbjct: 1126 NIAYGDNSRVV----SYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIA 1181
Query: 775 MARA-----------------------VFNSCIKEELRGKTRILVTNQLHFLPHVDRIIL 811
+ARA V + + G+T I++ ++L + + D I++
Sbjct: 1182 IARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVV 1241
Query: 812 VSEGMIKEEGSFEELSKHGRLFQKL--MENAGKMEEMEEREE 851
+ G +KE G+ ++L ++ + ++ K +
Sbjct: 1242 IQNGKVKEHGTHQQLLAQKGIYFSMVSVQAGAKRSYVHHHHH 1283
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 2e-23
Identities = 66/363 (18%), Positives = 137/363 (37%), Gaps = 46/363 (12%)
Query: 959 FYIAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILRAPMLFFHTNPIGRVI 1018
Y YT + G + V + + +++ R ++ ++I+ + +F + +G +
Sbjct: 109 TYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELN 168
Query: 1019 NRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLW-------AIMPLLILF 1071
R + D+ I+ + + MF Q ++TF I+ W AI P+L L
Sbjct: 169 TRLTDDVSKINEGIGDKIGMFF----QAMATFFGGFIIGFTRGWKLTLVILAISPVLGLS 224
Query: 1072 YAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAF----KAYDRMAKINGKSM 1127
+ S+ K L + ++ A+ E L + T+ AF K +R ++
Sbjct: 225 AGIWAKILSSF-TDKELHAYAKAGAVAE--EVLAAIRTVIAFGGQKKELERYNNNLEEAK 281
Query: 1128 DNNIRFTLANTSSNRWLTIRLETLGGIMIWLIATFAV--------MQNGRAENQVAFAST 1179
I+ + S +G + + A++A+ + +
Sbjct: 282 RLGIKKAITANIS----------MGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVF 331
Query: 1180 MGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPS 1239
+L+ ++ + + A A V ID +S P
Sbjct: 332 FSVLIG-AFSVGQASP-NIEAFANA---RGAAYEVFKIIDNKPSIDSFSKSGHKPDN--I 384
Query: 1240 SGSIKFEDVVLRY--RPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELE 1297
G+++F+++ Y R E+ +L GL+ V + V +VG +G GKS+ + + R+ +
Sbjct: 385 QGNLEFKNIHFSYPSRKEV-QILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPL 443
Query: 1298 RGE 1300
G
Sbjct: 444 DGM 446
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 196 bits (500), Expect = 3e-53
Identities = 118/565 (20%), Positives = 230/565 (40%), Gaps = 69/565 (12%)
Query: 327 GRFWLGGLFKIGNDLSQFVGPVLLNHLL-QSMQRGDPAWIGYIYAFLIFVGVSFGVLTEA 385
+ G+ I N S LL LL + D + + ++ +I + + G+
Sbjct: 25 AGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGI---T 81
Query: 386 QYFQNVW--RVGFRLRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQ-ISQ 442
Y + V ++ T+ +F + + +G + + IT D+ + S
Sbjct: 82 SYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSG 141
Query: 443 QLHGLWSAPFR-ITLSMVLLYQ--QLGVASLLGSLMLVLMVPLQTFIIS----KMRKLTK 495
L + I L +++ Y QL S++LV++ P+ + I + R ++K
Sbjct: 142 ALITVVREGASIIGLFIMMFYYSWQL-------SIILVVLAPIVSIAIRVVSKRFRSISK 194
Query: 496 EGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFI 555
+ + ++L V + ++ R + + K S+ + I
Sbjct: 195 NMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPI 254
Query: 556 LNSIP--VVVTVVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVS 613
+ I + V+ +F + LT S L PL L N+ +Q +
Sbjct: 255 IQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAA 314
Query: 614 LQRLEELLLAEERILMPNPPLEPELPAVSIKNGNFSWDSK-SPTLSNINLDIPVGSLVAI 672
Q L +L +E+ ++ + +N F++ + P L NINL IP G VA+
Sbjct: 315 CQTLFAILDSEQEKDEGKRVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVAL 374
Query: 673 VGGTGEGKTSLVSAMLGELP---------------PLKDASVV-IRGTVAYVPQISWIFN 716
VG +G GK+++ S L + L++ ++ +R VA V Q +FN
Sbjct: 375 VGRSGSGKSTIAS--L--ITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFN 430
Query: 717 ATLRKNILFG--SEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVS 774
T+ NI + E+ + + ++ ++ + + T IGE GV +SGGQ+QR++
Sbjct: 431 DTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIA 490
Query: 775 MARAVF-NSCI---------------------KEEL-RGKTRILVTNQLHFLPHVDRIIL 811
+ARA+ +S I +EL + +T +++ ++L + D I++
Sbjct: 491 IARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVV 550
Query: 812 VSEGMIKEEGSFEELSKHGRLFQKL 836
V +G+I E G+ EL ++ +L
Sbjct: 551 VEDGIIVERGTHSELLAQHGVYAQL 575
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 1e-31
Identities = 53/361 (14%), Positives = 127/361 (35%), Gaps = 46/361 (12%)
Query: 957 PGFYIAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILRAPMLFFHTNPIGR 1016
P I + + ++SY + S + + + ++ P+ FF G
Sbjct: 68 PLVVIGLMILRGITS----YISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGT 123
Query: 1017 VINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVS---TISLWAIMPLLILFYA 1073
+++R + D + + + + + + ++ F+++ S +I L + P++ +
Sbjct: 124 LLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIA-- 181
Query: 1074 AYLYYQSTAREVKRLDSITR------SPVYAQFGEALNGLSTIRAF----KAYDRMAKIN 1123
KR SI++ V + L G + F R K++
Sbjct: 182 -------IRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVS 234
Query: 1124 GKSMDNNIRFTLANTSSNRWLTIRLETLGGIMIWLIATFAVMQNGRAENQVAFASTMGLL 1183
K ++ A++ ++ + + + + A V + T G +
Sbjct: 235 NKMRLQGMKMVSASS----ISDPIIQLIASLALAFVLYAASFP------SVMDSLTAGTI 284
Query: 1184 LSYTLNITNLLSGVLRQASRAENSLN----AVERVGTYIDLPSEAPGMVESNRPPPAWPS 1239
+ L L+ + A + + +D E +
Sbjct: 285 TVV-FSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKD-----EGKRVIDRA 338
Query: 1240 SGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERG 1299
+G ++F +V Y P L ++ + + V +VGR+G+GKS++ + + R +++ G
Sbjct: 339 TGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEG 398
Query: 1300 E 1300
Sbjct: 399 H 399
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 194 bits (496), Expect = 1e-52
Identities = 111/572 (19%), Positives = 220/572 (38%), Gaps = 83/572 (14%)
Query: 327 GRFWLGGLFKIGNDLSQFVGPVLLNHLL-QSMQRGDPAWIGYIYAFLIFVGVSFGVLTEA 385
+ + + N + LL LL + + ++ + ++ + G+ +
Sbjct: 25 AGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLRILPFMILGLMFVRGL---S 81
Query: 386 QYFQNVW--RVGFRLRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQ-ISQ 442
+ + V + + +F + + +G + + IT D+ + S+
Sbjct: 82 GFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSR 141
Query: 443 QLHGLWSAPFR-ITLSMVLLYQ--QLGVASLLGSLMLVLMVPLQTFIIS----KMRKLTK 495
L + I L ++ + QL SL+L+++ P+ F IS + RK+++
Sbjct: 142 ALVSIVREGASIIGLLTLMFWNSWQL-------SLVLIVVAPVVAFAISFVSKRFRKISR 194
Query: 496 EGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFI 555
S ++L V Y ++ + R + + K + +
Sbjct: 195 NMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPV 254
Query: 556 LNSIP--VVVTVVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVS 613
+ I + V+ + + +LTP S L PL L ++ S+ +
Sbjct: 255 IQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAA 314
Query: 614 LQRLEELLLAEERILMPNPPLEPELPAVSIKNGNFSWDSK-SPTLSNINLDIPVGSLVAI 672
Q L L+ E E V +K+ F++ K P LS+++ IP G VA+
Sbjct: 315 CQTLFGLMDLETERDNGKYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVAL 374
Query: 673 VGGTGEGKTSLVSAMLGELP---------------PLKDASVV-IRGTVAYVPQISWIFN 716
VG +G GK+++ + L ++D + +R A V Q +FN
Sbjct: 375 VGRSGSGKSTIAN--L--FTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFN 430
Query: 717 ATLRKNILFGSEFDP--------AKYWKTVDVSALQHD-LDLLPDRDLTEIGERGVNISG 767
T+ NI + +E + A+ A + ++ +P T IGE G ++SG
Sbjct: 431 DTIANNIAYAAEGEYTREQIEQAAR-------QAHAMEFIENMPQGLDTVIGENGTSLSG 483
Query: 768 GQKQRVSMARAVF-NSCI---------------------KEEL-RGKTRILVTNQLHFLP 804
GQ+QRV++ARA+ ++ + +EL + KT +++ ++L +
Sbjct: 484 GQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIE 543
Query: 805 HVDRIILVSEGMIKEEGSFEELSKHGRLFQKL 836
D I++V EG I E G +L + +L
Sbjct: 544 QADEILVVDEGEIIERGRHADLLAQDGAYAQL 575
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 5e-31
Identities = 64/416 (15%), Positives = 144/416 (34%), Gaps = 60/416 (14%)
Query: 909 LTRYKNALGGPWVIMILFACYLSTEVLRISSSTWLSFWTDQS-TSKNYNPGFYIAIYTI- 966
+ YK L + +++ A + L D+ + N + +
Sbjct: 20 IRLYKAGLVVSTIALVINA------AADTYMISLLKPLLDEGFGNAESNFLRILPFMILG 73
Query: 967 LAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILRAPMLFFHTNPIGRVINRFSRDLG 1026
L F + +SY L S ++ + N + P+ FF G +++R + D
Sbjct: 74 LMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSE 133
Query: 1027 DIDRNVASFVNMFMNQLWQLLSTFV-LIGIVSTISLW-------AIMPLLILFYAAYLYY 1078
VA + + + + ++ + L+ ++ S W + P++
Sbjct: 134 ----QVAGATSRALVSIVREGASIIGLLTLMFWNS-WQLSLVLIVVAPVVAFA------- 181
Query: 1079 QSTAREVKRLDSITR------SPVYAQFGEALNGLSTIRAF----KAYDRMAKINGKSMD 1128
+ KR I+R V + + L G + ++ R K++
Sbjct: 182 --ISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQ 239
Query: 1129 NNIRFTLANTSSNRWLTIRLETLGGIMIWLIATFAVMQNGRAENQVAFASTMGLLLSYTL 1188
++ A + ++ + + ++ + A + + T G
Sbjct: 240 QTMKLVSAQS----IADPVIQMIASLALFAVLFLASVD------SIRAELTPGTFTVV-F 288
Query: 1189 NITNLLSGVLRQASRAENSLN----AVERVGTYIDLPSEAPGMVESNRPPPAWPSSGSIK 1244
+ L L+ + + A + + +DL +E +G +
Sbjct: 289 SAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERD---NGKYEAE--RVNGEVD 343
Query: 1245 FEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
+DV Y+ + P L +SF++ + V +VGR+G+GKS++ N R +++ G
Sbjct: 344 VKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGS 399
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 179 bits (457), Expect = 1e-47
Identities = 117/581 (20%), Positives = 230/581 (39%), Gaps = 93/581 (16%)
Query: 327 GRFWLGGLFKIGNDLSQFVGPVLLNHLL-QSMQRGDPAWIGYIYAFLIFVGVSFGVL--- 382
R + + I + P+L+ + + + ++ I +G++ +
Sbjct: 14 YRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIV 73
Query: 383 -TEAQYFQNVW------RVGFRLRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDAN 435
++ + ++ + +R L + L+ G+V + + D
Sbjct: 74 RPPIEFIRQYLAQWTSNKILYDIRKKL----YNHLQALSARFYANNQVGQVISRVINDVE 129
Query: 436 ALQQ-ISQQLHGLWSAPFRITLSMVLLYQ---QLGVASLLGSLMLVLMVPLQTFIISKMR 491
+ I L +W I +++ +++ +L +A+L + + ++R
Sbjct: 130 QTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALF---IFPFYILTVYVFFGRLR 186
Query: 492 KLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAF 551
KLT+E Q +E + + VK +A E + + L+ K +A+
Sbjct: 187 KLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAY 246
Query: 552 ----NSFILNSIPVVVTVVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQV 607
+ + + P++V G + + G +T + +L PL L + +
Sbjct: 247 SFAAINTVTDIGPIIVIG--VGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTL 304
Query: 608 VNANVSLQRLEELLLAEERILMPNPPLEPELP----AVSIKNGNFSW-DSKSPTLSNINL 662
+ S+ R+ +L+ + I N + + I + +F + D+++P L +INL
Sbjct: 305 TQSFASMDRVFQLIDEDYDI--KNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINL 362
Query: 663 DIPVGSLVAIVGGTGEGKTSLVSAMLGELP---------------PLKDASVV-IRGTVA 706
I G VA VG +G GK++L++ L +P +KD +R +
Sbjct: 363 SIEKGETVAFVGMSGGGKSTLIN--L--IPRFYDVTSGQILIDGHNIKDFLTGSLRNQIG 418
Query: 707 YVPQISWIFNATLRKNILFGSE-------FDPAKYWKTVDVSALQHDL-DLLPDRDLTEI 758
V Q + +F+ T+++NIL G + AK A HD LP TE+
Sbjct: 419 LVQQDNILFSDTVKENILLGRPTATDEEVVEAAK-------MANAHDFIMNLPQGYDTEV 471
Query: 759 GERGVNISGGQKQRVSMARA-VFNSCI----------------------KEELRGKTRIL 795
GERGV +SGGQKQR+S+AR + N I + +T ++
Sbjct: 472 GERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLI 531
Query: 796 VTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKL 836
V ++L + H D+I+++ G I E G+ EL ++ L
Sbjct: 532 VAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHL 572
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 2e-30
Identities = 58/394 (14%), Positives = 131/394 (33%), Gaps = 34/394 (8%)
Query: 915 ALGGPWVIMILFACYLSTEVLRISSSTWLSFWTDQSTSKNYNPGFYIAIYTILAFGQVTV 974
+ P +I ++ L + +
Sbjct: 30 PMLIPLLIKYAIDGVINNHALTTDEKVHHLTI--------AIGIALFIFVIVRPPIEFIR 81
Query: 975 TLLNSYWLIISSLRAAKRLHDSMLNSILRAPMLFFHTNPIGRVINRFSRDLGDIDRNVAS 1034
Y +S + + + N + F+ N +G+VI+R D+ + +
Sbjct: 82 Q----YLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILT 137
Query: 1035 FVNMFMNQLWQLLSTFVLIGIVS-TISLWAIMPLLILFYAAYLYYQSTAREVKRLDSITR 1093
+ ++ ++ + ++L A+ Y + R++ R S
Sbjct: 138 GLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVY-VFFGRLRKLTRERSQAL 196
Query: 1094 SPVYAQFGEALNGLSTIRAF----KAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLE 1149
+ V E + G+S +++F K N + ++ T N S + +
Sbjct: 197 AEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINT-VT 255
Query: 1150 TLGGIMIWLIATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLN 1209
+G I++ + + + + T+G L ++ + L + R +
Sbjct: 256 DIGPIIVIGVGAYLAISG---------SITVGTLAAFVGYLELLFGPLRRLVASFTTLTQ 306
Query: 1210 AV---ERVGTYIDLPSEAPGMVESNRPPPAWPSSGSIKFEDVVLRYRPELPPVLHGLSFT 1266
+ +RV ID + + P G I + V +Y P+L ++ +
Sbjct: 307 SFASMDRVFQLIDEDYD---IKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLS 363
Query: 1267 VSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
+ E V VG +G GKS+++N + R ++ G+
Sbjct: 364 IEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ 397
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 166 bits (423), Expect = 3e-43
Identities = 124/579 (21%), Positives = 241/579 (41%), Gaps = 76/579 (13%)
Query: 329 FWLGGLFKIGNDLSQFVGPVLLNHLL-QSMQRGDPAWI---GYIYAFLIFVGVSFGVLTE 384
L LF + + P LL ++ + + RGD + + G + + +G G+
Sbjct: 25 AVLAPLFMVVEVICDLSQPTLLARIVDEGIARGDFSLVLKTGILMLIVALIGAVGGIG-- 82
Query: 385 AQYF--QNVWRVGFRLRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQ 442
F G LR +FRK L + F + + +T D LQ +
Sbjct: 83 CTVFASYASQNFGADLRR----DLFRKVLSFSISNVNRFHTSSLITRLTNDVTQLQNLVM 138
Query: 443 Q-LHGLWSAPFRITLSMVLLYQQLGVASLLGSLMLVLMVPLQTFIISKMRKLTKEGLQWT 501
L + AP +V+ S + ++ +V L ++ K L ++ + T
Sbjct: 139 MLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQEST 198
Query: 502 DRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNS----FILN 557
D + E L + V+ + E+ + + A L F FI+N
Sbjct: 199 DEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFALPLFIFIVN 258
Query: 558 SIPVVVTVVSFGTFTLLGGDLTPAR--AFTS---LSLFAVLRFPLNMLPNLLSQVVNANV 612
++ V+ FG + + A+T+ +F+++ M+ N+L+ +V A+
Sbjct: 259 M--GMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLM-----MIGNILNFIVRASA 311
Query: 613 SLQRLEELLLAEERILMPNPPLEPELPAVSI--KNGNFSW-DSKSPTLSNINLDIPVGSL 669
S +R+ E+L + I + L S+ +N F + ++ P LS +N + GSL
Sbjct: 312 SAKRVLEVLNEKPAIEEADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSL 371
Query: 670 VAIVGGTGEGKTSLVSAMLGELPPLKDA---SVVI-------------RGTVAYVPQISW 713
VA++G TG GK++L++ +P L D V + RG ++ VPQ +
Sbjct: 372 VAVLGETGSGKSTLMNL----IPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETV 427
Query: 714 IFNATLRKNILFGSEF-DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQR 772
+F+ T+++N+ +G E + + ++ + + LP+ + + G N SGGQKQR
Sbjct: 428 LFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQR 487
Query: 773 VSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFLPHVDRI 809
+S+ARA+ +K +G T ++T ++ D+I
Sbjct: 488 LSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKI 547
Query: 810 ILVSEGMIKEEGSFEELSKHGRLFQKLMENAGKMEEMEE 848
+++ EG + G+ +EL +H + ++++ E+ M +
Sbjct: 548 LVLHEGKVAGFGTHKELLEHCKPYREIYESQFGNGVMND 586
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 91.9 bits (229), Expect = 5e-19
Identities = 74/372 (19%), Positives = 141/372 (37%), Gaps = 80/372 (21%)
Query: 966 ILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILRAPMLFFHTNPIGRVINRFS--- 1022
I+A + + + +S L + +L F +N +NRF
Sbjct: 71 IVALIGAVGGIGCTVFASYASQNFGADLRRDLFRKVLS----FSISN-----VNRFHTSS 121
Query: 1023 ---RDLGDIDRNVASFVNMFMNQLWQLLSTFVLIG-IVSTIS--------LWAIMPLLIL 1070
R D+ + + V M + + + + + +G IV +S L ++P ++L
Sbjct: 122 LITRLTNDV-TQLQNLVMMLLRIV--VRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVL 178
Query: 1071 F-----YAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYD----RMAK 1121
++ ++ + R E L G+ +RAF+ + K
Sbjct: 179 LFVWLTKKGNPLFRKIQESTDEVNRVVR--------ENLLGVRVVRAFRREEYENENFRK 230
Query: 1122 INGKSMDNNIRFTLANTSSNRWLTIRLETLGGIM-------IWLIATFAV---MQNGRAE 1171
N + I + + L I+ +W M+ G
Sbjct: 231 ANESLRRSIIS-------AFSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIG--- 280
Query: 1172 NQVAFASTMGLLLSYTLNITN---LLSGVLRQASRAENSLNAVERVGTYIDLPSEAPGMV 1228
+ +A+ +Y + I ++ +L RA S +RV ++ E P +
Sbjct: 281 SIMAY-------TNYLMQIMFSLMMIGNILNFIVRASASA---KRVLEVLN---EKPAIE 327
Query: 1229 ESNRPPPAWPSSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLN 1288
E++ GS+ FE+V RY PVL G++F+V P V ++G TG+GKS+++N
Sbjct: 328 EADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMN 387
Query: 1289 ALFRIVELERGE 1300
+ R+++ ERG
Sbjct: 388 LIPRLIDPERGR 399
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 140 bits (356), Expect = 1e-34
Identities = 108/572 (18%), Positives = 221/572 (38%), Gaps = 95/572 (16%)
Query: 327 GRFWLGGLFKIGNDLSQFVGPVLLNHLLQSM-QRGDPAWIGYIYAFLIFVGVSFGVLTEA 385
+ +F + + + P L+ + + + +++ +G + + +
Sbjct: 37 FTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRR---FDLLPRYMLILGTIYALTSLL 93
Query: 386 QYFQNVW--RVGFRLRSTLVAAIFRKTLRL------THEARKGFPSGKVTNMITTDANAL 437
+ Q + + L +F K R+ P G + + + D + +
Sbjct: 94 FWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRT------PHGDIISRVINDVDNI 147
Query: 438 QQ-ISQQLHGLWSAPFRITLS---MVLLYQQLGVASLLGSLMLVLMVPLQTFIISKMRKL 493
+ + +S + + M + L + +L ++ L V + + S+ RK
Sbjct: 148 NNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLS---IVPLTVLITQIVSSQTRKY 204
Query: 494 TKEGLQWTDR-RV-SLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAF 551
E ++ + E ++ + +K + E+ + + + KAQ S
Sbjct: 205 FYE--NQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGV 262
Query: 552 ----NSFILNSIPVVVTVVSFGTFTLLGGDLTPAR--AFTSLS-LFAVLRFPLNMLPNLL 604
+ + N +++ G + L +T F S F PLN L N
Sbjct: 263 LPPLMNMVNNLGFALISGF--GGWLALKDIITVGTIATFIGYSRQFT---RPLNELSNQF 317
Query: 605 SQVVNANVSLQRLEELLLAEERILMPNPPLEPELP-AVSIKNGNFSWDSKSPTLSNINLD 663
+ + A S +R+ E+L EE P+ E+ + KN FS+D K P L +I
Sbjct: 318 NMIQMALASAERIFEILDLEEEKDDPDAVELREVRGEIEFKNVWFSYDKKKPVLKDITFH 377
Query: 664 IPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI-------------RGTVAYVPQ 710
I G VA+VG TG GKT++V+ +L + +++ R ++ V Q
Sbjct: 378 IKPGQKVALVGPTGSGKTTIVN-LLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQ 436
Query: 711 ISWIFNATLRKNILFGSE-------FDPAKYWKTVDVSALQHD-LDLLPDRDLTEIGERG 762
+ +F+ T+++N+ +G+ + AK + LP+ T + + G
Sbjct: 437 DTILFSTTVKENLKYGNPGATDEEIKEAAK-------LTHSDHFIKHLPEGYETVLTDNG 489
Query: 763 VNISGGQKQRVSMARAVFN-----------SCI------------KEELRGKTRILVTNQ 799
++S GQ+Q +++ RA S + + + GKT I++ ++
Sbjct: 490 EDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHR 549
Query: 800 LHFLPHVDRIILVSEGMIKEEGSFEEL-SKHG 830
L+ + + D II++ +G I E G +EL K G
Sbjct: 550 LNTIKNADLIIVLRDGEIVEMGKHDELIQKRG 581
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 7e-24
Identities = 81/417 (19%), Positives = 165/417 (39%), Gaps = 62/417 (14%)
Query: 909 LTRYKNALGGPWVIMILFACYLSTEVLRISSSTWLSFWTDQSTSK-NYNP-GFYIAIYTI 966
L + + ++++F + +L + S + D ++ Y+ I
Sbjct: 32 LRPHT------FTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDLLPRYMLILGT 85
Query: 967 LAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILRAPMLFFHTNPIGRVINRFSRDLG 1026
+ + L ++ S RL + + R P+ FF P G +I+R
Sbjct: 86 IYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDIISRVI---N 142
Query: 1027 DIDRNVASFVNMFMNQLWQLLSTFVLIGIVS---TISLW------AIMPLLILFYA---- 1073
D+D N+ + + + Q L G V +++ +I+PL +L
Sbjct: 143 DVD-NINNVLGNSIIQF--FSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVSS 199
Query: 1074 -AYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAF----KAYDRMAKINGKSMD 1128
Y+ R + +L+ E ++GL+ I+ F K ++ ++N
Sbjct: 200 QTRKYFYENQRVLGQLN--------GIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRK 251
Query: 1129 NNIRFTLANTSSNRW--LTIRLETLGGIMIWLIATFAVMQNGRAENQVAFASTMGLL--- 1183
+ A S L + LG +I + +++ T+G +
Sbjct: 252 VGTK---AQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDI---------ITVGTIATF 299
Query: 1184 LSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSGSI 1243
+ Y+ T L+ + Q + + +L + ER+ +DL E + + G I
Sbjct: 300 IGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKD---DPDAVELR-EVRGEI 355
Query: 1244 KFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
+F++V Y + PVL ++F + P +KV +VG TG+GK++++N L R +++RG+
Sbjct: 356 EFKNVWFSYDKK-KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQ 411
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 3e-33
Identities = 67/307 (21%), Positives = 131/307 (42%), Gaps = 60/307 (19%)
Query: 596 PLNMLPNLLSQVVNANVSLQRLEELLLAEERIL-MPN-PPLEPELPAVSIKNGNFSWDSK 653
+ L+ + + + ++ + +LL E + +P PL + + +N +FS+
Sbjct: 7 HHHHSSGLVPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADG 66
Query: 654 SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDA---SVVI--------- 701
TL +++ + G +A+VG +G GK++++ L D + I
Sbjct: 67 RETLQDVSFTVMPGQTLALVGPSGAGKSTILRL----LFRFYDISSGCIRIDGQDISQVT 122
Query: 702 ----RGTVAYVPQISWIFNATLRKNILFGSE-------FDPAKYWKTVDVSALQHDLDL- 749
R + VPQ + +FN T+ NI +G A+ +A HD +
Sbjct: 123 QASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQ-------AAGIHDAIMA 175
Query: 750 LPDRDLTEIGERGVNISGGQKQRVSMARAVFN-----------------------SCIKE 786
P+ T++GERG+ +SGG+KQRV++AR + + + +
Sbjct: 176 FPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAK 235
Query: 787 ELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLMENAGKMEEM 846
+T I+V ++L + + D+I+++ +G I E G E L G ++ + + EE
Sbjct: 236 VCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSRGGVYADMWQLQQGQEET 295
Query: 847 EEREEKD 853
E +
Sbjct: 296 SEDTKPQ 302
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 1e-14
Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 7/101 (6%)
Query: 1192 NLLSGVLRQASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSGSIKFEDVVLR 1251
+ SG++ R + +E + DL E + + P G I+FE+V
Sbjct: 9 HHSSGLVP---RGSHMFIDMENM---FDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFS 62
Query: 1252 YRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFR 1292
Y L +SFTV P + + +VG +GAGKS++L LFR
Sbjct: 63 YADG-RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFR 102
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 1e-32
Identities = 24/69 (34%), Positives = 43/69 (62%)
Query: 1229 ESNRPPPAWPSSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLN 1288
+ WPS G + +D+ +Y +L +SF++SP ++VG++GRTG+GKS++L+
Sbjct: 6 SHVKKDDIWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLS 65
Query: 1289 ALFRIVELE 1297
A R++ E
Sbjct: 66 AFLRLLNTE 74
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 2e-26
Identities = 61/293 (20%), Positives = 113/293 (38%), Gaps = 49/293 (16%)
Query: 630 PNPPLE-PELPAVSIKNGNFSWDSKSPT-LSNINLDIPVGSLVAIVGGTGEGKTSLVSAM 687
P +++K+ + L NI+ I G V ++G TG GK++L+SA
Sbjct: 8 VKKDDIWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAF 67
Query: 688 LGELPPLKDASVVI-------------RGTVAYVPQISWIFNATLRKNILFGSEFDPAKY 734
L L + + I R +PQ +IF+ T RKN+ + +
Sbjct: 68 LRLLNT--EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEI 125
Query: 735 WKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFNSC----------- 783
WK D L+ ++ P + + + G +S G KQ + +AR+V +
Sbjct: 126 WKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAH 185
Query: 784 ------------IKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEEL-SKHG 830
+K+ T IL ++ + D+ +++ E +++ S EL
Sbjct: 186 LDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPA 245
Query: 831 RLFQKLMENAGKMEEM--------EEREEKDDSINSNQEVSKPVANRAVQVNE 875
F + KM + ++ + + + + Q+V PV +R VQV
Sbjct: 246 DRFVAGFIGSPKMNFLPVKVTATAIDQVQVELPMPNRQQVWLPVESRDVQVGA 298
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 2e-32
Identities = 61/240 (25%), Positives = 111/240 (46%), Gaps = 51/240 (21%)
Query: 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAML-------GEL-- 691
+S ++ +F++D L +I+ + S++A G +G GK+++ S + GE+
Sbjct: 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITI 61
Query: 692 --PPLKDASVV-IRGTVAYVPQISWIFNATLRKNILFGSEFDP--------AKYWKTVDV 740
P+ + S+ R + +V Q S I T+R+N+ +G E D
Sbjct: 62 DGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLD------- 114
Query: 741 SALQHD-LDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN------------------ 781
A ++ +PD+ TE+GERGV ISGGQ+QR+++ARA
Sbjct: 115 LAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSES 174
Query: 782 -SCIKEEL----RGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKL 836
S +++ L +G+T +++ ++L + D+I + +G I G EL L+ K
Sbjct: 175 ESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKY 234
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 62.5 bits (153), Expect = 9e-11
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
+ V Y + +L +SF P+ + G +G GKS++ + L R + GE
Sbjct: 2 LSARHVDFAY-DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGE 58
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 2e-28
Identities = 58/241 (24%), Positives = 114/241 (47%), Gaps = 51/241 (21%)
Query: 640 AVSIKNGNFSWDSKS--PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAML------GEL 691
+ + NFS+ ++ TL +IN IP G+ A+VG TG GK+++ + G++
Sbjct: 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDI 76
Query: 692 P----PLKDASVV-IRGTVAYVPQISWIFNATLRKNILFGSE-------FDPAKYWKTVD 739
+ + IR + VPQ + +FN T++ NIL+G K
Sbjct: 77 KIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATK------ 130
Query: 740 VSALQHDL-DLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN----------------- 781
SA +D + LP + T +G +G+ +SGG++QR+++AR +
Sbjct: 131 -SAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSK 189
Query: 782 --SCIKEEL----RGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQK 835
++ + + +T I++ ++L + + IIL+++G I E+G+ ++L K + +
Sbjct: 190 TEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAE 249
Query: 836 L 836
+
Sbjct: 250 M 250
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 3e-11
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 1241 GSIKFEDVVLRYRPELP-PVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFR 1292
+I+F DV Y + L ++F + +VG TG+GKS++ L+R
Sbjct: 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYR 68
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 111 bits (281), Expect = 2e-27
Identities = 66/244 (27%), Positives = 111/244 (45%), Gaps = 52/244 (21%)
Query: 640 AVSIKNGNFSWDSKSPT-LSNINLDIPVGSLVAIVGGTGEGKTSLVSAML-------GEL 691
++ +N F + SP L NINL I G ++ IVG +G GK++L + G++
Sbjct: 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 66
Query: 692 ----PPLKDASVV-IRGTVAYVPQISWIFNATLRKNILFGSE-------FDPAKYWKTVD 739
L A +R V V Q + + N ++ NI + AK
Sbjct: 67 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAK------ 120
Query: 740 VSALQHD-LDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN----------------- 781
A HD + L + T +GE+G +SGGQ+QR+++ARA+ N
Sbjct: 121 -LAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 179
Query: 782 --SCIKEEL----RGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEEL-SKHGRLFQ 834
I + +G+T I++ ++L + + DRII++ +G I E+G +EL S+ L+
Sbjct: 180 SEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYS 239
Query: 835 KLME 838
L +
Sbjct: 240 YLYQ 243
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 72.5 bits (179), Expect = 4e-14
Identities = 20/60 (33%), Positives = 36/60 (60%)
Query: 1241 GSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
I F ++ RY+P+ P +L ++ ++ E +GIVGR+G+GKS++ + R E G+
Sbjct: 6 HDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 8e-25
Identities = 56/250 (22%), Positives = 102/250 (40%), Gaps = 63/250 (25%)
Query: 641 VSIKNGNFSWDS--KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAML-------GEL 691
V ++ +F++ + L + + G + A+VG G GK+++ + + G++
Sbjct: 17 VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKV 76
Query: 692 ----PPLKDASVV-IRGTVAYVPQISWIFNATLRKNILFGSEFDP--------AKYWKTV 738
PL + VA V Q +F + R+NI +G P A
Sbjct: 77 LLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAM----- 131
Query: 739 DVSALQHD-LDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFNSCIKE----------- 786
+ HD + P TE+GE G +SGGQ+Q V++ARA+ I++
Sbjct: 132 --ESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARAL----IRKPRLLILDNATS 185
Query: 787 ------------------ELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSK 828
E +T +L+T QL I+ + EG + E+G+ +L +
Sbjct: 186 ALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLME 245
Query: 829 HGRLFQKLME 838
G ++ ++E
Sbjct: 246 RGGCYRSMVE 255
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 57.9 bits (141), Expect = 4e-09
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 1240 SGSIKFEDVVLRY--RPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFR 1292
G +KF+DV Y P + VL GL+FT+ P + +VG G+GKS++ L
Sbjct: 14 KGLVKFQDVSFAYPNHPNVQ-VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQN 67
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 96.9 bits (242), Expect = 2e-22
Identities = 47/215 (21%), Positives = 95/215 (44%), Gaps = 46/215 (21%)
Query: 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDAS 698
A+S++N F + +++ +N D+ G ++A++G G GK++L+ +LG P++
Sbjct: 3 KALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQ-GK 61
Query: 699 VVIRGTVAYVPQ-ISWIFNATLRKNILFG-----SEFDPAKYWKTVDVSALQHDLDLLPD 752
+ + ++ +VPQ S F ++ +L G + F K+ D LD L
Sbjct: 62 IEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTF---AKPKSHDYQVAMQALDYL-- 116
Query: 753 RDLTEIGERGVN-ISGGQKQRVSMARA------------------VFN-----SCIKE-- 786
+LT + +R +SGGQ+Q + +ARA + N S + +
Sbjct: 117 -NLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLA 175
Query: 787 ELRGKTRILVTNQLHFLPHV----DRIILVSEGMI 817
+ + T + T H V ++ +L+++
Sbjct: 176 QSQNMTVVFTT---HQPNQVVAIANKTLLLNKQNF 207
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 1e-07
Identities = 14/59 (23%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 1242 SIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
++ E++ Y+ E + L+F ++ + + ++G+ G GKS++L+ L I +G+
Sbjct: 4 ALSVENLGFYYQAE-NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGK 61
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 86.4 bits (215), Expect = 2e-18
Identities = 55/280 (19%), Positives = 107/280 (38%), Gaps = 81/280 (28%)
Query: 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP----- 693
+ ++ N+++ + L IN++I G + AI+GG G GK++L G L P
Sbjct: 6 YILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI 65
Query: 694 --------LKDASVV-IRGTVAYV---P--QISWIFNATLRKNILFGSE---FDPAKYWK 736
++ +R ++ V P Q +F+A++ +++ FG+ + K
Sbjct: 66 LFDNKPIDYSRKGIMKLRESIGIVFQDPDNQ---LFSASVYQDVSFGAVNMKLPEDEIRK 122
Query: 737 TVDVSALQHDLDLLPDRDLTEIGERGV-NISGGQKQRVSMA------------------- 776
VD + L + + ++ +S GQK+RV++A
Sbjct: 123 RVD--------NALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGL 174
Query: 777 ----RAVFNSCIKE--ELRGKTRILVTNQLHFLPHV----DRIILVSEGMIKEEGS---- 822
+ + E + G T I+ T H + V D + ++ EG + +G+
Sbjct: 175 DPMGVSEIMKLLVEMQKELGITIIIAT---HDIDIVPLYCDNVFVMKEGRVILQGNPKEV 231
Query: 823 ---FEELSKHG-------RLFQKLMENAG-KMEEMEEREE 851
E + K L + L E G +E++E
Sbjct: 232 FAEKEVIRKVNLRLPRIGHLMEILKEKDGFVFDELDEGHH 271
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 52.9 bits (128), Expect = 2e-07
Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSM---LNALFR 1292
+K E++ Y + L G++ + E I+G G GKS++ N + +
Sbjct: 8 LKVEELNYNY-SDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK 59
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 9e-16
Identities = 36/242 (14%), Positives = 81/242 (33%), Gaps = 47/242 (19%)
Query: 630 PNPPLEPELPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLG 689
+ + K L I+ I G + G G GKT+L++ +
Sbjct: 11 SGLVPRGSHMLIQLDQIGRMKQGK-TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNA 69
Query: 690 ELPPLK-DASVV-------------IRGTVAYVPQ---ISWIFNATLRKNILFGSEFDPA 732
P ++ +R + +V + + ++ G+ F
Sbjct: 70 YEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGA-FKSI 128
Query: 733 KYWKTVDVSALQHDLDLLPDRDLTEIGERGV-NISGGQKQRVSMARAVFN---------- 781
++ +D LL ++ ++ + +S G+KQRV +ARA+
Sbjct: 129 GVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEP 188
Query: 782 ----------------SCIKEELRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFE 824
+ + I VT+ + + + +I+L+ +G ++G+ E
Sbjct: 189 AAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVE 248
Query: 825 EL 826
++
Sbjct: 249 DI 250
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 2e-06
Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
I+ + + + + +L +S+ ++ +K + G GAGK+++LN L G
Sbjct: 22 IQLDQIGRMKQGK--TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGT 77
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 1e-14
Identities = 50/271 (18%), Positives = 95/271 (35%), Gaps = 74/271 (27%)
Query: 640 AVSIKNGNFSWDSKSPT----LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP-- 693
+ + N + + +P L N++L I G + + G TG GK++L+ + G + P
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS 61
Query: 694 -------LKDASVVIRGTVAYV---P--QISWIFNATLRKNILFGSE--FDPAKYWKTVD 739
+ IR + P Q F + + F + + V
Sbjct: 62 GDVLYDGERKKGYEIRRNIGIAFQYPEDQ---FFAERVFDEVAFAVKNFYPDRDPVPLVK 118
Query: 740 VSALQH---DLDLLPDRDLTEIGERGVNISGGQKQRVSMA-------------------- 776
A++ D D DR +SGG+K+RV++A
Sbjct: 119 -KAMEFVGLDFDSFKDRVPFF-------LSGGEKRRVAIASVIVHEPDILILDEPLVGLD 170
Query: 777 ----RAVFNSCIKEELRGKTRILVTNQLHFLPHV----DRIILVSEGMIKEEGSFEE--- 825
+ K + GKT IL++ H + V DR++++ +G +G+ E
Sbjct: 171 REGKTDLLRIVEKWKTLGKTVILIS---HDIETVINHVDRVVVLEKGKKVFDGTRMEFLE 227
Query: 826 ------LSKHGRLFQKLMENAGKMEEMEERE 850
+ + ++L+ M + E
Sbjct: 228 KYDPRFFTSKMLVMRRLVLKGEDPFSMSDDE 258
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 5e-08
Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 1242 SIKFEDVVLRYRPELP---PVLHGLSFTVSPSEKVGIVGRTGAGKSS---MLNALFR 1292
I+ +V + P L +S ++ E + + G TG+GKS+ ++ L
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE 58
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 5e-14
Identities = 42/230 (18%), Positives = 84/230 (36%), Gaps = 50/230 (21%)
Query: 624 EERILMPNPPLEPELPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSL 683
+ RI L+ + + + + L+ + ++ ++G G GKT+L
Sbjct: 335 QFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTL 394
Query: 684 VSAMLGELPPLKDASVVIRGTVAYVPQ-ISWIFNATLRKNILFG----SEFDPAKYWKTV 738
+ + G L P + + + V+ PQ I+ F T+R+ LF +F ++ V
Sbjct: 395 IKLLAGALKP-DEGQDIPKLNVSMKPQKIAPKFPGTVRQ--LFFKKIRGQFLNPQFQTDV 451
Query: 739 DVSALQHDLDLLPDRDLTEIGERGV-NISGGQKQRVSMARA------------------- 778
+ L + +I ++ V ++SGG+ QRV++ A
Sbjct: 452 --------VKPL---RIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDS 500
Query: 779 --------VFNSCIKEELRGKTRILVTNQLHFLPHV-DRIILVSEGMIKE 819
V I KT +V + ++ D++I+ K
Sbjct: 501 EQRIICSKVIRRFILH--NKKTAFIVEHDFIMATYLADKVIVFEGIPSKN 548
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 1e-08
Identities = 43/313 (13%), Positives = 98/313 (31%), Gaps = 78/313 (24%)
Query: 638 LPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP---- 693
LP + + + S L + G ++ +VG G GK++ + + G+ P
Sbjct: 75 LPTNLEAHVTHRYSANSFKL-HRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGR 133
Query: 694 ------------------LKDASV-VIRGTVAYVPQISWI--FNATLRKNILFGSEFDPA 732
L++ ++ + + + ++ ++ + E
Sbjct: 134 FDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKL 193
Query: 733 KYWK-TVDVSALQHDLDL--LPDRDLTEIGERGVNISGGQKQRVSMARAVFNSC------ 783
+ K DV L L + RD+ + +SGG+ QR ++ +
Sbjct: 194 RMEKSPEDVKRYIKILQLENVLKRDIEK-------LSGGELQRFAIGMSCVQEADVYMFD 246
Query: 784 -------------IKEELR-----GKTRILVTNQLHFLPHV-DRIIL-----VSEGMIKE 819
+ +R K I V + L L ++ D + + G++
Sbjct: 247 EPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVYGVVTL 306
Query: 820 EGSFEEL----------SKHGRLFQKLMENAGKMEEMEEREEKDDSINSNQEVSKPVANR 869
S E +++ R + ++ + + + S + K +
Sbjct: 307 PASVREGINIFLDGHIPAENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQGDF 366
Query: 870 AVQVN--EFPKNE 880
+ V EF +E
Sbjct: 367 VLNVEEGEFSDSE 379
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 1e-04
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 1246 EDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNAL 1290
V RY LH L T P + +G+VG G GKS+ L L
Sbjct: 81 AHVTHRYSAN-SFKLHRL-PTPRPGQVLGLVGTNGIGKSTALKIL 123
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 2e-04
Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Query: 1220 LPSEAPGMVESNRPPPAWPSSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRT 1279
+EA ++ S S F L+ VL+ S SE + ++G
Sbjct: 329 FRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQG-DFVLNVEEGEFSDSEILVMMGEN 387
Query: 1280 GAGKSSMLNALFRIVELERGENI 1302
G GK++++ L ++ + G++I
Sbjct: 388 GTGKTTLIKLLAGALKPDEGQDI 410
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 4e-13
Identities = 44/222 (19%), Positives = 78/222 (35%), Gaps = 46/222 (20%)
Query: 641 VSIKNGNFSWDSKS---PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELP----- 692
+ +KN + K +L NINL++ G V I+G G GKT+L+ A+ G LP
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLPYSGNI 60
Query: 693 -----PLKDASVVIRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDL 747
++ IR +P+ ++ T+ + E +++
Sbjct: 61 FINGMEVRKIRNYIRY-STNLPE-AYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLG 118
Query: 748 DLLPDRDLTEIGERGVNISGGQKQRVSMARAVFNSC-------------------IKEEL 788
+ + R L ++ S GQ V + A+ + I +
Sbjct: 119 EEILRRKLYKL-------SAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYI 171
Query: 789 R--GKTRILVT-NQLHFLPHVDRIILVSEG-MIKEEGSFEEL 826
+ GK ILVT + + G ++ S EL
Sbjct: 172 KEYGKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSEL 213
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 9e-13
Identities = 56/273 (20%), Positives = 97/273 (35%), Gaps = 44/273 (16%)
Query: 618 EELLLAEERILMPNPPLEPELPAVS--IKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGG 675
+E + + E ++ D S L +I G ++ IVG
Sbjct: 331 DENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGP 390
Query: 676 TGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQ-ISWIFNATLRKNILFGSEFDPAKY 734
G GKT+ V + G P + V TVAY PQ I + T+ + + S+ D +K
Sbjct: 391 NGIGKTTFVKMLAGVEEPTEG-KVEWDLTVAYKPQYIKAEYEGTVYELL---SKIDSSKL 446
Query: 735 WKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN------------- 781
+ L L ++ D + + +SGG+ QRV++A +
Sbjct: 447 NSNFYKTELLKPLGIIDLYD-RNVED----LSGGELQRVAIAATLLRDADIYLLDEPSAY 501
Query: 782 ----------SCIKE--ELRGKTRILVTNQLHFLPHV-DRIILVSEGMIKEEGSFEELSK 828
I+ E KT ++V + + + +V DR+I V EG G
Sbjct: 502 LDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLI-VFEGEPGRHGRALPPMG 560
Query: 829 HGRLFQKLMENAGKMEEMEE-----REEKDDSI 856
+ + + G + R K+ S+
Sbjct: 561 MREGMNRFLASVGITFRRDPDSGRPRANKEGSV 593
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 2e-07
Identities = 47/275 (17%), Positives = 97/275 (35%), Gaps = 53/275 (19%)
Query: 659 NINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP-LKDASVVIRGTVAYVPQ--ISWIF 715
+ G +V IVG G GKT+ V + G+L P L + + + + F
Sbjct: 109 YRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYF 168
Query: 716 NATLRKNI--LFGSEF---DPAKYWKTVD-----VSALQHDLDLLPDRDLTEIGERGV-N 764
I + ++ P V V + +++ + +L + +R +
Sbjct: 169 ERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQ 228
Query: 765 ISGGQKQRVSMARAVFNSC-------------------IKEELR-----GKTRILVTNQL 800
+SGG+ QRV++A A+ + +R GK ++V + L
Sbjct: 229 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDL 288
Query: 801 HFLPHV-DRIIL-----VSEGMIKEEGSFEELS---KHGRLFQKLM---ENAGKMEEMEE 848
L ++ D I + G+ + G L + + + ++ E
Sbjct: 289 AVLDYLSDVIHVVYGEPGVYGIFSKPKGTRNGINEFLQGYLKDENVRFRPYEIRFTKLSE 348
Query: 849 REEKD-DSINSNQEVSKPVANRAVQVN--EFPKNE 880
R + + +++ + K + ++V E K E
Sbjct: 349 RVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGE 383
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 7e-05
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 1246 EDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNAL 1290
ED V RY VL+ V VGIVG G GK++ + L
Sbjct: 95 EDCVHRYGVNAF-VLYR-LPIVKDGMVVGIVGPNGTGKTTAVKIL 137
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 1e-04
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 1259 VLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
L + E +GIVG G GK++ + L + E G+
Sbjct: 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGK 412
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 9e-12
Identities = 49/241 (20%), Positives = 88/241 (36%), Gaps = 47/241 (19%)
Query: 621 LLAEERILMPNPPLEPELPA--------VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAI 672
L +E + ++ + D S L +I G ++ I
Sbjct: 258 YLKDENVRFRPYEIKFTKTGERVEIERETLVTYPRLVKDYGSFRLEVEPGEIKKGEVIGI 317
Query: 673 VGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQ-ISWIFNATLRKNILFGSEFDP 731
VG G GKT+ V + G P + + TVAY PQ I + T+ + L
Sbjct: 318 VGPNGIGKTTFVKMLAGVEEP-TEGKIEWDLTVAYKPQYIKADYEGTVYE--LLSKIDAS 374
Query: 732 AKYWKTVDVSALQHDLDLLPDRDLTEIGERGV-NISGGQKQRVSMARAVFN--------- 781
+++ + +LL + ++ +R V +SGG+ QRV++A +
Sbjct: 375 K-------LNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDE 427
Query: 782 --------------SCIKE--ELRGKTRILVTNQLHFLPHV-DRIILVSEGMIKEEGSFE 824
I+ E KT ++V + + + +V DR++ V EG + G
Sbjct: 428 PSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLM-VFEGEPGKYGRAL 486
Query: 825 E 825
Sbjct: 487 P 487
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 7e-06
Identities = 43/216 (19%), Positives = 77/216 (35%), Gaps = 60/216 (27%)
Query: 659 NINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP-----LKDASVVIR----------- 702
+ G +V IVG G GK++ V + G+L P VIR
Sbjct: 39 YRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYF 98
Query: 703 -----GTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVD-VSALQHDLDL--LPDRD 754
G + V + + + K + G + K + + L+L + +R+
Sbjct: 99 EKLKNGEIRPVVKPQ--YVDLIPK-AVKGKVIELLKKADETGKLEEVVKALELENVLERE 155
Query: 755 LTEIGERGVNISGGQKQRVSMARAVFNSC-------------------IKEELR-----G 790
+ + SGG+ QRV++A A+ + +R G
Sbjct: 156 IQHL-------SGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEG 208
Query: 791 KTRILVTNQLHFLPHV-DRIILVSEGMIKEEGSFEE 825
K+ ++V + L L ++ D I +V G G F +
Sbjct: 209 KSVLVVEHDLAVLDYLSDIIHVV-YGEPGVYGIFSQ 243
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 5e-04
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 1259 VLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
L + E +GIVG G GK++ + L + E G+
Sbjct: 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGK 342
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 8e-04
Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 1246 EDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNAL 1290
ED V RY VL+ L V VGIVG G GKS+ + L
Sbjct: 25 EDCVHRYGVN-AFVLYRL-PVVKEGMVVGIVGPNGTGKSTAVKIL 67
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 63.3 bits (155), Expect = 6e-11
Identities = 27/142 (19%), Positives = 51/142 (35%), Gaps = 27/142 (19%)
Query: 652 SKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGT------- 704
++S L ++ ++ G ++ +VG G GK++L++ M G S+ G
Sbjct: 11 AESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG--KGSIQFAGQPLEAWSA 68
Query: 705 ------VAYVPQISWI-FNATLRKNILFGSEFDPAKYWKTVDVSALQH-DLDLLPDRDLT 756
AY+ Q F + + + ++ LD R
Sbjct: 69 TKLALHRAYLSQQQTPPFATPVWHYLTLHQH--DKTRTELLN-DVAGALALDDKLGRSTN 125
Query: 757 EIGERGVNISGGQKQRVSMARA 778
+ +SGG+ QRV +A
Sbjct: 126 Q-------LSGGEWQRVRLAAV 140
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 6e-05
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 1258 PVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRI 1293
L LS V E + +VG GAGKS++L + +
Sbjct: 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM 49
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 1e-10
Identities = 47/263 (17%), Positives = 92/263 (34%), Gaps = 54/263 (20%)
Query: 605 SQVVNANVSLQRLEELLLAEERILMPNPPLEPELPAVS-----------IKNGNFSWDSK 653
S+ A V + + L E + + ++ L VS +K
Sbjct: 221 SKSYAARVGINNFLKGYLPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLG 280
Query: 654 SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGT-VAYVPQIS 712
L N + G ++ I+G G GKT+ ++GE+ + SV ++Y PQ
Sbjct: 281 DFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITA-DEGSVTPEKQILSYKPQRI 339
Query: 713 WI-FNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGV-NISGGQK 770
+ ++ T+++ + + +K + + L +L + E V ++SGG+
Sbjct: 340 FPNYDGTVQQYL-----ENASKDALSTSSWFFEEVTKRL---NLHRLLESNVNDLSGGEL 391
Query: 771 QRVSMARA-----------------------VFNSCIKE--ELRGKTRILVTNQLHFLPH 805
Q++ +A + IK R ++ H L
Sbjct: 392 QKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIID---HDLSI 448
Query: 806 VDRI---ILVSEGMIKEEGSFEE 825
D I I+V +G ++ G
Sbjct: 449 HDYIADRIIVFKGEPEKAGLATS 471
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 8e-09
Identities = 38/219 (17%), Positives = 73/219 (33%), Gaps = 60/219 (27%)
Query: 657 LSNINLDIPV-GSLVAIVGGTGEGKTSLVSAMLGELPP-LKDASVV---------IRGT- 704
L P +++ ++G G GKT+++ + GE+ P D + RG
Sbjct: 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKE 73
Query: 705 VAYVPQ---------ISWIFNATLRKNILFGSE---FDPAKYWKTVDVSALQHDLDL--L 750
+ + + I L G+ D ++ L++ L
Sbjct: 74 IYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKD--EVKELLNMTNL 131
Query: 751 PDRDLTEIGERGVNISGGQKQRVSMARAVFNSC-----------------------IKEE 787
++D + SGG QR+ +A ++ I+E
Sbjct: 132 WNKDANIL-------SGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIREL 184
Query: 788 LRGKTRILVTNQLHFLPHV-DRIILVSEGMIKEEGSFEE 825
L+ K I+V + L L ++ D I ++ G G +
Sbjct: 185 LKNKYVIVVDHDLIVLDYLTDLIHII-YGESSVYGRVSK 222
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 6e-04
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 1259 VLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
L + E +GI+G G GK++ L + + G
Sbjct: 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGS 324
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 1e-09
Identities = 32/197 (16%), Positives = 72/197 (36%), Gaps = 41/197 (20%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLK-DASVV------IRGTVAYVP 709
L I + I G++V G G GKT+L+ + L PLK + ++G + ++P
Sbjct: 25 LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLP 84
Query: 710 QISWIF-NATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGG 768
+ + ++ + + Y V+ + + L+ + ++ ++ ++ +S G
Sbjct: 85 EEIIVPRKISVEDYLKAVASL----YGVKVNKNEIMDALESV---EVLDLKKKLGELSQG 137
Query: 769 QKQRVSMARAVFN-----------------------SCIKEELR-GKTRILVTNQLHFLP 804
+RV +A + I E L+ I+ + L
Sbjct: 138 TIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSR--EELS 195
Query: 805 HVDRIILVSEGMIKEEG 821
+ D + + K +
Sbjct: 196 YCDVNENLHKYSTKIDK 212
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 1e-08
Identities = 44/236 (18%), Positives = 88/236 (37%), Gaps = 58/236 (24%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP-----------LKDASVVIRGTV 705
L I+ +I G + ++G G GKT+ + + + P + + +R +
Sbjct: 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLI 90
Query: 706 AYVPQISWIF-NATLRKNILFGSEF---DPAKYWKTVDVSALQHDLDLLPDRDLTEIGER 761
+Y+P+ + + N + + F + F ++ + V+ L E +
Sbjct: 91 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVE--------RATEIAGLGEKIKD 142
Query: 762 GV-NISGGQKQRVSMARAVFNS-------------------CIKEELR-----GKTRILV 796
V S G +++ +ARA+ + +++ L+ G T ++
Sbjct: 143 RVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVS 202
Query: 797 TNQLHFLPHV----DRIILVSEGMIKEEGSFEEL---SKHGRLFQKLMENAGKMEE 845
+ H + V DRI L+ G I E G+ EEL K + + E E
Sbjct: 203 S---HNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIEEVFEEVVKCSEN 255
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 2e-08
Identities = 51/215 (23%), Positives = 95/215 (44%), Gaps = 60/215 (27%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGT-VAYVP--QISW 713
L N+NL+I G V+I+G +G GK+++++ ++G L + V I + +++
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLN-IIGCLDKPTEGEVYIDNIKTNDLDDDELTK 79
Query: 714 I-----------FN----ATLRKNILFGSEFDPAKYWKTVDVSALQHD---LDLLPDRDL 755
I FN T +N+ P + +S + L+ L +
Sbjct: 80 IRRDKIGFVFQQFNLIPLLTALENVEL-----PLIFKYRGAMSGEERRKRALECL---KM 131
Query: 756 TEIGERGVN-----ISGGQKQRVSMARAVFNS----------------------CIKEEL 788
E+ ER N +SGGQ+QRV++ARA+ N+ + ++L
Sbjct: 132 AELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKL 191
Query: 789 ---RGKTRILVTNQLHFLPHVDRIILVSEGMIKEE 820
GKT ++VT+ ++ +RII + +G ++ E
Sbjct: 192 NEEDGKTVVVVTHDINVARFGERIIYLKDGEVERE 226
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 2e-08
Identities = 54/250 (21%), Positives = 104/250 (41%), Gaps = 63/250 (25%)
Query: 629 MPNPPLEPELPAVSIKNGNFSWDSKSPT---LSNINLDIPVGSLVAIVGGTGEGKTSLVS 685
+ + + + N + + T L+N++L +P G + ++G +G GK++L+
Sbjct: 13 SSGHIDDDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIR 72
Query: 686 AM-LGELPPLKDASVVIRGT----------VAYVPQISWIF-------NATLRKNILFGS 727
+ L E P + SV++ G QI IF + T+ N+
Sbjct: 73 CVNLLERP--TEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVAL-- 128
Query: 728 EFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERG----VNISGGQKQRVSMARAVFNS- 782
P + T + +LL L +G++ N+SGGQKQRV++ARA+ ++
Sbjct: 129 ---PLELDNTPKDEVKRRVTELL---SLVGLGDKHDSYPSNLSGGQKQRVAIARALASNP 182
Query: 783 ----C---------------------IKEELRGKTRILVTNQLHFLPHV-DRIILVSEGM 816
C I L G T +L+T+++ + + D + ++S G
Sbjct: 183 KVLLCDQATSALDPATTRSILELLKDINRRL-GLTILLITHEMDVVKRICDCVAVISNGE 241
Query: 817 IKEEGSFEEL 826
+ E+ + E+
Sbjct: 242 LIEQDTVSEV 251
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 1e-04
Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 5/74 (6%)
Query: 1222 SEAPGMVESNRPPPAWPSSGSIKFEDVVLRYRPELPPV--LHGLSFTVSPSEKVGIVGRT 1279
+ IK ++ + + L+ +S V + G++G +
Sbjct: 4 HHHHHHHHHSSGHIDDDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGAS 63
Query: 1280 GAGKSS---MLNAL 1290
GAGKS+ +N L
Sbjct: 64 GAGKSTLIRCVNLL 77
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 2e-08
Identities = 43/210 (20%), Positives = 81/210 (38%), Gaps = 55/210 (26%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGT-VAYVP--QISW 713
L I+L + G V+I+G +G GK++L+ +LG L + V + G V Y ++S
Sbjct: 20 LKGISLSVKKGEFVSIIGASGSGKSTLLY-ILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 714 I-----------FN----ATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEI 758
+ T +N++ P A + LL +
Sbjct: 79 LRNRKLGFVFQFHYLIPELTALENVIV-----PMLKMGKPKKEAKERGEYLL---SELGL 130
Query: 759 GERGVN----ISGGQKQRVSMARAVFNSC----------------------IKEELR--G 790
G++ +SGG++QRV++ARA+ N I ++ G
Sbjct: 131 GDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGG 190
Query: 791 KTRILVTNQLHFLPHVDRIILVSEGMIKEE 820
+ ++VT++ R + + +G + E
Sbjct: 191 TSIVMVTHERELAELTHRTLEMKDGKVVGE 220
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 44.0 bits (105), Expect = 1e-04
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNAL 1290
++ E++ R +L G+S +V E V I+G +G+GKS++L L
Sbjct: 5 LRAENIKKVIRGY--EILKGISLSVKKGEFVSIIGASGSGKSTLLYIL 50
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.0 bits (134), Expect = 8e-08
Identities = 97/676 (14%), Positives = 204/676 (30%), Gaps = 210/676 (31%)
Query: 33 DWYCRPVANGTWAKTVDSTFGAYTTCAVDSLVISISHSVLLGLCIFRIWLMNKNSKARRY 92
++ C+ V D + +D +++S +V L +F L + +++
Sbjct: 32 NFDCKDVQ--------DMPKSILSKEEIDHIIMS-KDAVSGTLRLFWTLLSKQEEMVQKF 82
Query: 93 ---RLSSNCYNYMLGLLACYCTAEPLLRLVMGIS----IFNLDGETSFAPF-----EMVS 140
L N Y +++ + +P + M I ++N D + FA + +
Sbjct: 83 VEEVLRIN-YKFLMSPIKTEQR-QPSMMTRMYIEQRDRLYN-DNQ-VFAKYNVSRLQPYL 138
Query: 141 LIIEALAWCSMLIMICLETKFYIREFRWYVRFGVI----YVLVGDAVILNLIIPMRDYYS 196
+ +AL LE +R + + GV+ + D + + D+
Sbjct: 139 KLRQAL----------LE----LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF-- 182
Query: 197 RITLYLYISMVFCQALFGILILVYIPNLDPYPGYTIMQPEFVDNAEY-EALPGGEHVCPE 255
+I ++++ C + +L + + L + P + +++ + H
Sbjct: 183 KI---FWLNLKNCNSPETVLEM--LQKL-----LYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 256 RNASILSRTSFGWMTP--LLQLGYKKPITEKDVWKLDTWD----QTEILI---------- 299
L R LL L +V W+ +IL+
Sbjct: 233 E----LRRLLKSKPYENCLLVL--------LNVQNAKAWNAFNLSCKILLTTRFKQVTDF 280
Query: 300 ----EKFHRCWIEESQ-----RSKPWLLRALNNSFGGRFWLGGLFKIGNDLS---QFVGP 347
H S K LL+ L+ DL P
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ-------------DLPREVLTTNP 327
Query: 348 VLLNHLLQSMQRGDPA-WIGYIY----AFLIFVGVSFGVLTEA---QYFQNVWRVGFRLR 399
L+ ++ R A W + + + S VL A + F +
Sbjct: 328 RRLS-IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL-------- 378
Query: 400 STLVAAIFRKTLRLTHEARKGFPSGKV-----TNMITTDANALQQISQQLHGL-----WS 449
++F + + P+ + ++I +D + +LH
Sbjct: 379 -----SVFPPSAHI--------PT-ILLSLIWFDVIKSDV---MVVVNKLHKYSLVEKQP 421
Query: 450 APFRIT---LSMVLLYQQLGVASLLGSLMLVLMVPLQTFIISKMRKLTKEGLQWTD---- 502
I+ + + L + +L S+ + + I K + D
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRSI-------VDHYNIPKTFDSDDLIPPYLDQYFY 474
Query: 503 -------------RRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLS 549
R++L + +D + + + Q IR D +W L+
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMVF--LD----FRFLE------QKIRHDSTAWNASGSILN 522
Query: 550 AFN------SFILNSIPVVVTVV-SFGTFTL-LGGDLTPARAFTSLSLFAVLRFPLNMLP 601
+I ++ P +V + F + +L ++ +T L LR L M
Sbjct: 523 TLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSK-YTDL-----LRIAL-MAE 575
Query: 602 NLLSQVVN-ANVSLQR 616
+ + A+ +QR
Sbjct: 576 D--EAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.5 bits (130), Expect = 2e-07
Identities = 72/480 (15%), Positives = 129/480 (26%), Gaps = 136/480 (28%)
Query: 667 GSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISWIFNATLRKNILFG 726
V I G G GKT + + V + +I W+ N
Sbjct: 150 AKNVLIDGVLGSGKTWVALDV------CLSYKVQCK----MDFKIFWL-N--------LK 190
Query: 727 SEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNI-----SGGQKQRVSMARAVFN 781
+ P V + L D + T + NI S + R + +
Sbjct: 191 NCNSPE------TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 782 SCI--------KEELR---GKTRILVT----NQLHFLPHVDRIILVSEGMIKEEGSFEEL 826
+C+ + +IL+T FL + + E
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 827 SKHGRLFQKLMENAGKMEEMEEREEKDDSINSNQEVSKP--VANRAVQVNEFPKNESYTK 884
S L K ++ + E + N P ++ A + + K
Sbjct: 305 S----LLLKYLD----CRPQDLPREV-LTTN-------PRRLSIIAESIRDGLATWDNWK 348
Query: 885 KGKRGRSVLVKQEERETGIVSGSVLTRYKNALGGPWVIMILFACYLSTEVLR----ISSS 940
V ++ T I+ S+ N L + V I +
Sbjct: 349 H--------VNCDKLTT-IIESSL-----NVLEPA----EYRKMFDRLSVFPPSAHIPTI 390
Query: 941 TWLSFWTDQSTS----------------KNYNPGFYIAIYTILAFGQVTVTLLNSYWLII 984
W D S K I+I +I Y +
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE-STISIPSI-------------YLELK 436
Query: 985 SSLRAAKRLHDSMLNSILRAPMLFFHTNPIGRVI-NRFSRDLG------DIDRNVASFVN 1037
L LH S+++ P F + I + F +G + + F
Sbjct: 437 VKLENEYALHRSIVDH-YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM 495
Query: 1038 MFMNQLWQLLSTFVLIGIVSTISLW----AIMPLL--ILFYAAYLYYQSTAREVKRLDSI 1091
+F++ F+ I + W +I+ L + FY Y+ E + +++I
Sbjct: 496 VFLD-----FR-FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE-RLVNAI 548
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 53.9 bits (129), Expect = 4e-07
Identities = 48/289 (16%), Positives = 89/289 (30%), Gaps = 52/289 (17%)
Query: 609 NANVSLQRLEELLLAEERILMPNPPLEPELPAVSIKNGNFSWDSKSPTLSNINLDIPVGS 668
A L + + + E E + + ++ +K L+ L +
Sbjct: 404 KAKDILDEFRKRAVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAK-ILLNKTQLRLKRAR 462
Query: 669 LVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISWIFNATLRKNIL-FGS 727
I G G GK++L+ A+ R YV ++ ++L F
Sbjct: 463 RYGICGPNGCGKSTLMRAIANGQVDGFPTQEECR--TVYVEHDIDGTHS--DTSVLDFVF 518
Query: 728 EFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFNSC---- 783
E + + + I +SGG K ++++ARAV +
Sbjct: 519 ESGVGTKE---AIKDKLIEFGFTDEMIAMPISA----LSGGWKMKLALARAVLRNADILL 571
Query: 784 ---------------IKEELRG--KTRILVTNQLHFLPHV-DRIILVSEGMIKE-EGSFE 824
+ L T I +++ FL +V + II +++ +G+F
Sbjct: 572 LDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFT 631
Query: 825 ELSKHGRLFQKLMENAGKMEEMEEREEKDDSINSNQEVSKPVANRAVQV 873
E F K K + EE ++ E P V
Sbjct: 632 E-------FVK------KCPAAKAYEELSNTD---LEFKFPEPGYLEGV 664
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 1e-05
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
+K ++ +Y P + ++F S S ++ ++G GAGKS+++N L + GE
Sbjct: 672 VKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGE 729
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 47.3 bits (112), Expect = 4e-05
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 643 IKNGNFSWDSKS-PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI 701
+ N F + S P +++IN + S +A++G G GK++L++ + GEL P + V
Sbjct: 674 VTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLP--TSGEVY 731
Query: 702 RGT---VAYVPQ 710
+AY+ Q
Sbjct: 732 THENCRIAYIKQ 743
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 50.9 bits (123), Expect = 6e-07
Identities = 34/144 (23%), Positives = 64/144 (44%), Gaps = 34/144 (23%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP--------------LKDASVVIR 702
+ I+L +P G +V ++G G GKT+ +SA+ G + +
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM 81
Query: 703 GTVAYVPQISWIF-NATLRKNILFGSEFDPAKYWKTVDVSALQHDLDL-------LPDRD 754
G +A VP+ IF T+ +N++ G+ K ++ DL+ L +R
Sbjct: 82 G-IALVPEGRRIFPELTVYENLMMGAYNRKDK-------EGIKRDLEWIFSLFPRLKER- 132
Query: 755 LTEIGERGVNISGGQKQRVSMARA 778
+ + G +SGG++Q +++ RA
Sbjct: 133 ---LKQLGGTLSGGEQQMLAIGRA 153
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 50.5 bits (122), Expect = 9e-07
Identities = 12/42 (28%), Positives = 25/42 (59%)
Query: 1259 VLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
+ G+ V + V ++G GAGK++ L+A+ +V ++G+
Sbjct: 21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGK 62
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 1e-06
Identities = 54/230 (23%), Positives = 94/230 (40%), Gaps = 51/230 (22%)
Query: 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLG-ELPPLKDA 697
+ + + ++ ++ I G +V ++G +G GKT+++ + G E P
Sbjct: 13 MTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERP---TK 69
Query: 698 -SVVIRGT-VAYVP----QISWIF-------NATLRKNILFGSEFD-PAKYWKTVDVSAL 743
V I G V +P + +F + T+ N+ FG K V L
Sbjct: 70 GDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVREL 129
Query: 744 QHDLDLLPDRDLTEIGERGVN-ISGGQKQRVSMARAVFNS---------------CIKEE 787
L + L R + +SGGQ+QRV++ARA+ I+ E
Sbjct: 130 ---LRFM---RLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRE 183
Query: 788 LR----------GKTRILVT-NQLHFLPHVDRIILVSEGMIKEEGSFEEL 826
LR G T + VT +Q L DR++++ EG +++ G+ EE+
Sbjct: 184 LRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEV 233
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 3e-05
Identities = 34/139 (24%), Positives = 64/139 (46%), Gaps = 28/139 (20%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLG--ELPPLKDA-SVVIRGT-VAYVP--- 709
L N++L + G I+G TG GKT + ++ +P D+ +++ G V +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLE-LIAGFHVP---DSGRILLDGKDVTDLSPEK 71
Query: 710 -QISWIF-------NATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGER 761
I++++ + ++KN+ FG K K V L + + +R
Sbjct: 72 HDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVL-----DTARDL---KIEHLLDR 123
Query: 762 GVN-ISGGQKQRVSMARAV 779
+SGG++QRV++ARA+
Sbjct: 124 NPLTLSGGEQQRVALARAL 142
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 4e-05
Identities = 41/209 (19%), Positives = 81/209 (38%), Gaps = 50/209 (23%)
Query: 659 NINLDIPVGS-LVAIVGGTGEGKTSLVSAMLG-ELPPLKDASVVIRGT-VAYVP----QI 711
+N+D +G ++G TG GK+ + + G P V + G + +P I
Sbjct: 15 RLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKP--DRGEVRLNGADITPLPPERRGI 72
Query: 712 SWIF-------NATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVN 764
++ + ++ +NI +G + ++ + L + + +R
Sbjct: 73 GFVPQDYALFPHLSVYRNIAYGLR----NVERVERDRRVREMAEKL---GIAHLLDRKPA 125
Query: 765 -ISGGQKQRVSMARAVFNS-------------------CIKEELR------GKTRILVT- 797
+SGG++QRV++ARA+ + EELR + VT
Sbjct: 126 RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTH 185
Query: 798 NQLHFLPHVDRIILVSEGMIKEEGSFEEL 826
+ + D + ++ G I E+G +EL
Sbjct: 186 DLIEAAMLADEVAVMLNGRIVEKGKLKEL 214
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 56/250 (22%), Positives = 94/250 (37%), Gaps = 70/250 (28%)
Query: 630 PNPPLEPELPAVSIKN-----GNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLV 684
P L + + G+ L IN+ I G +V ++G +G GK++ +
Sbjct: 14 LVPRGSHMLQMIDVHQLKKSFGSLE------VLKGINVHIREGEVVVVIGPSGSGKSTFL 67
Query: 685 SAMLGELPPLKDASVVIRGTVAYVP--QISWI----------FN----ATLRKNILFGSE 728
L L + ++I G ++ + FN T+ NI
Sbjct: 68 RC-LNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLA-- 124
Query: 729 FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERG----VNISGGQKQRVSMARAVFNSC- 783
P K K A ++LL D + ++ ++SGGQ QRV++ARA+
Sbjct: 125 --PMKVRKWPREKAEAKAMELL---DKVGLKDKAHAYPDSLSGGQAQRVAIARAL---AM 176
Query: 784 ------------------IKEELR--------GKTRILVTNQLHFLPHV-DRIILVSEGM 816
+ E L G T ++VT+++ F V DR++ + G
Sbjct: 177 EPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGY 236
Query: 817 IKEEGSFEEL 826
I EEG E+L
Sbjct: 237 IIEEGKPEDL 246
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 2e-04
Identities = 45/165 (27%), Positives = 71/165 (43%), Gaps = 41/165 (24%)
Query: 641 VSIKNGNFSWDS-KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAML--------GEL 691
+ +KN + + K L N+N++I G I+G +G GKT+ + ++ GEL
Sbjct: 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMR-IIAGLDVPSTGEL 62
Query: 692 PPLKDASVVIRGTVAYVP----QISWIF-------NATLRKNILFG---SEFDPAKYWKT 737
D +V VP +I +F N T +NI F + + K
Sbjct: 63 --YFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKR 120
Query: 738 VDVSA----LQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARA 778
V+ A + H L+ P R+L SG Q+QRV++ARA
Sbjct: 121 VEEVAKILDIHHVLNHFP-REL----------SGAQQQRVALARA 154
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 59/238 (24%), Positives = 97/238 (40%), Gaps = 72/238 (30%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSL------------------------VSAMLGELP 692
L ++L G +++I+G +G GK++ V G+L
Sbjct: 22 LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLK 81
Query: 693 PLKDASVV-IRGTVAYVPQISWIFN----ATLRKNILFGSEFDPAKYWKTVDVSALQHDL 747
+ +R + V Q FN T+ +N++ P + A + L
Sbjct: 82 VADKNQLRLLRTRLTMVFQH---FNLWSHMTVLENVMEA----PIQVLGLSKHDARERAL 134
Query: 748 DLLPDRDLTEIGERG-----VNISGGQKQRVSMARAV--------FN---SC-----IKE 786
L I ER V++SGGQ+QRVS+ARA+ F+ S + E
Sbjct: 135 KYL---AKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGE 191
Query: 787 ELR--------GKTRILVTNQLHFLPHV-DRIILVSEGMIKEEGSFEEL---SKHGRL 832
LR GKT ++VT+++ F HV +I + +G I+EEG E++ + RL
Sbjct: 192 VLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGNPQSPRL 249
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 38/157 (24%), Positives = 65/157 (41%), Gaps = 32/157 (20%)
Query: 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV 700
+ ++N + L+NINL I G +A++G +G GK++L+ + + +
Sbjct: 4 IKLENIVKKFG-NFTALNNINLKIKDGEFMALLGPSGSGKSTLLY-TIAGIYKPTSGKIY 61
Query: 701 IRGT-VAYVP----QISWIF-------NATLRKNILFG---SEFDPAKYWKTVDVSA--- 742
V +P + +F + T+ KNI F + + K V A
Sbjct: 62 FDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKML 121
Query: 743 -LQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARA 778
+ L+ P L SGGQ+QRV++ARA
Sbjct: 122 HIDKLLNRYP-WQL----------SGGQQQRVAIARA 147
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 3e-04
Identities = 49/220 (22%), Positives = 92/220 (41%), Gaps = 63/220 (28%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSL---------------------VSAMLGELPPLK 695
L++I+L + G ++ I+G +G GKT+L + + LP +
Sbjct: 20 LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRE 79
Query: 696 DASVVIRGTVAYVPQISWIF-NATLRKNILFGSEFDPAKYWKTVDVSALQHD-LDLLPDR 753
R + Y+ Q +F + T+ +NI +G +T L+L
Sbjct: 80 ------RR-LGYLVQEGVLFPHLTVYRNIAYGLGNGK---GRTAQERQRIEAMLELT--- 126
Query: 754 DLTEIGERGVN-ISGGQKQRVSMARAVFNS-------------------CIKEELR---- 789
++E+ R + +SGGQ+QR ++ARA+ I+E++
Sbjct: 127 GISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALR 186
Query: 790 --GKTRILVT-NQLHFLPHVDRIILVSEGMIKEEGSFEEL 826
GK+ + V+ ++ L + DRI ++ +G I + S EL
Sbjct: 187 ANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHEL 226
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 5e-04
Identities = 39/154 (25%), Positives = 70/154 (45%), Gaps = 24/154 (15%)
Query: 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV 700
V ++N + ++ +NL I G + ++G +G GKT+ + M+ L + +
Sbjct: 12 VKLENLTKRFG-NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLR-MIAGLEEPTEGRIY 69
Query: 701 IRGT-VAYVP----QISWIF-------NATLRKNILFG---SEFDPAKYWKTVDVSALQH 745
V Y+P IS +F + T+ +NI F +F + K V +A
Sbjct: 70 FGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELL 129
Query: 746 DLDLLPDRDLTEIGERGVNISGGQKQRVSMARAV 779
++ L +R +SGGQ+QRV++ARA+
Sbjct: 130 QIEELLNR-------YPAQLSGGQRQRVAVARAI 156
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413 | Back alignment and structure |
|---|
Score = 42.4 bits (99), Expect = 8e-04
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 1272 KVGIVGRTGAGKSSMLNALFRIVELERG 1299
V + G TG+GKSS +N L I E G
Sbjct: 71 NVAVTGETGSGKSSFINTLRGIGNEEEG 98
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 1303 | ||||
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 2e-48 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 3e-13 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 8e-48 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 7e-17 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 3e-42 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 1e-14 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 5e-42 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 2e-12 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 2e-40 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 2e-13 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 2e-38 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 2e-15 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 2e-17 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 7e-07 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 7e-17 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 9e-07 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 1e-16 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 3e-06 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 7e-16 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 4e-08 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 1e-15 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 2e-06 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 1e-15 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 1e-06 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 2e-15 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 1e-06 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 3e-15 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 8e-07 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 6e-15 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 2e-07 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 1e-14 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 2e-07 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 1e-14 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 5e-08 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 6e-13 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 4e-06 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 7e-11 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 2e-07 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 4e-10 | |
| d3b60a2 | 319 | f.37.1.1 (A:10-328) Multidrug resistance ABC trans | 5e-08 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 7e-07 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 6e-05 | |
| d2gj8a1 | 161 | c.37.1.8 (A:216-376) Probable tRNA modification GT | 0.004 |
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 172 bits (436), Expect = 2e-48
Identities = 85/268 (31%), Positives = 127/268 (47%), Gaps = 29/268 (10%)
Query: 609 NANVSLQRLEELLLAEERILMPNPPLEPELPAVSIKNGNFSWDSKSPTLSNINLDIPVGS 668
N + LL + + + + VS + P L NINL+I G
Sbjct: 7 NVTAFWEEGFGELLEKVQQSNGDRKHSSDENNVSFSH--LCLVGN-PVLKNINLNIEKGE 63
Query: 669 LVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISWIFNATLRKNILFGSE 728
++AI G TG GKTSL+ +LGEL + + G V++ Q SWI T+++NI+FG
Sbjct: 64 MLAITGSTGSGKTSLLMLILGELEA-SEGIIKHSGRVSFCSQFSWIMPGTIKENIIFGVS 122
Query: 729 FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARA---------- 778
+D +Y V LQ D+ ++D T +GE GV +SGGQ+ R+S+ARA
Sbjct: 123 YDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLL 182
Query: 779 --------------VFNSCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFE 824
VF SC+ + + KTRILVT+++ L D+I+++ +G G+F
Sbjct: 183 DSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFS 242
Query: 825 EL-SKHGRLFQKLMENAGKMEEMEEREE 851
EL S KLM + EER
Sbjct: 243 ELQSLRPDFSSKLMGYDTFDQFTEERRS 270
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 69.2 bits (169), Expect = 3e-13
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 1229 ESNRPPPAWPSSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLN 1288
+SN ++ F + L P VL ++ + E + I G TG+GK+S+L
Sbjct: 25 QSNGDRKHSSDENNVSFSHLCLVGNP----VLKNINLNIEKGEMLAITGSTGSGKTSLLM 80
Query: 1289 ALFRIVELERGE 1300
+ +E G
Sbjct: 81 LILGELEASEGI 92
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 169 bits (430), Expect = 8e-48
Identities = 63/244 (25%), Positives = 112/244 (45%), Gaps = 37/244 (15%)
Query: 632 PPLEPELPAVSIKNGNFSW-DSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGE 690
P+E + + I + +F + D+++P L +INL I G VA VG +G GK++L++ +
Sbjct: 8 QPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRF 67
Query: 691 LPP-----------LKDASV-VIRGTVAYVPQISWIFNATLRKNILFGSE-FDPAKYWKT 737
+KD +R + V Q + +F+ T+++NIL G + +
Sbjct: 68 YDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEA 127
Query: 738 VDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAV------------------ 779
++ + LP TE+GERGV +SGGQKQR+S+AR
Sbjct: 128 AKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDL 187
Query: 780 -----FNSCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQ 834
+ + +T ++V ++L + H D+I+++ G I E G+ EL ++
Sbjct: 188 ESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYE 247
Query: 835 KLME 838
L
Sbjct: 248 HLYS 251
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 79.8 bits (197), Expect = 7e-17
Identities = 18/67 (26%), Positives = 33/67 (49%)
Query: 1234 PPAWPSSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRI 1293
P G I + V +Y P+L ++ ++ E V VG +G GKS+++N + R
Sbjct: 8 QPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRF 67
Query: 1294 VELERGE 1300
++ G+
Sbjct: 68 YDVTSGQ 74
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 153 bits (388), Expect = 3e-42
Identities = 58/244 (23%), Positives = 112/244 (45%), Gaps = 38/244 (15%)
Query: 633 PLEPELPAVSIKNGNFSWDSKS-PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGEL 691
++ + +N F++ + P L NINL IP G VA+VG +G GK+++ S +
Sbjct: 6 VIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFY 65
Query: 692 PPLKDASVV------------IRGTVAYVPQISWIFNATLRKNILFG--SEFDPAKYWKT 737
+ ++ +R VA V Q +FN T+ NI + E+ + +
Sbjct: 66 DIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEA 125
Query: 738 VDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN---------------- 781
++ ++ + + T IGE GV +SGGQ+QR+++ARA+
Sbjct: 126 ARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDT 185
Query: 782 -------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQ 834
+ + E + +T +++ ++L + D I++V +G+I E G+ EL ++
Sbjct: 186 ESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYA 245
Query: 835 KLME 838
+L +
Sbjct: 246 QLHK 249
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 73.0 bits (179), Expect = 1e-14
Identities = 16/61 (26%), Positives = 34/61 (55%)
Query: 1240 SGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERG 1299
+G ++F +V Y P L ++ + + V +VGR+G+GKS++ + + R +++ G
Sbjct: 11 TGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEG 70
Query: 1300 E 1300
Sbjct: 71 H 71
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 152 bits (385), Expect = 5e-42
Identities = 57/235 (24%), Positives = 112/235 (47%), Gaps = 37/235 (15%)
Query: 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP------- 693
+S ++ +F++D L +I+ + S++A G +G GK+++ S + P
Sbjct: 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITI 61
Query: 694 ----LKDASVV-IRGTVAYVPQISWIFNATLRKNILFGSE--FDPAKYWKTVDVSALQHD 746
+ + S+ R + +V Q S I T+R+N+ +G E + W+ +D++ +
Sbjct: 62 DGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSF 121
Query: 747 LDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN-----------------------SC 783
++ +PD+ TE+GERGV ISGGQ+QR+++ARA
Sbjct: 122 VENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKA 181
Query: 784 IKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLME 838
+ ++G+T +++ ++L + D+I + +G I G EL L+ K +
Sbjct: 182 LDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVS 236
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 66.4 bits (162), Expect = 2e-12
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
+ V Y + +L +SF P+ + G +G GKS++ + L R + GE
Sbjct: 2 LSARHVDFAY-DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGE 58
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 148 bits (374), Expect = 2e-40
Identities = 49/241 (20%), Positives = 100/241 (41%), Gaps = 43/241 (17%)
Query: 640 AVSIKNGNFSWDSKS--PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDA 697
V ++ +F++ ++ L + + G + A+VG G GK+++ + + P
Sbjct: 11 LVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQP-TGG 69
Query: 698 SVVIRGT-------------VAYVPQISWIFNATLRKNILFGSEFDP--AKYWKTVDVSA 742
+++ G VA V Q +F +L++NI +G P + S
Sbjct: 70 QLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSG 129
Query: 743 LQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN-------------------SC 783
+ LP TE+ E G +SGGQ+Q V++ARA+
Sbjct: 130 AHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQ 189
Query: 784 IKEELR------GKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLM 837
+++ L ++ +L+T L + D I+ + G I+E G+ ++L + + ++
Sbjct: 190 VEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYWAMV 249
Query: 838 E 838
+
Sbjct: 250 Q 250
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.2 bits (169), Expect = 2e-13
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 1237 WPSSGSIKFEDVVLRY--RPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIV 1294
G ++F+DV Y RP+ VL GL+FT+ P E +VG G+GKS++ L +
Sbjct: 6 LHLEGLVQFQDVSFAYPNRPD-VLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLY 64
Query: 1295 ELERGE 1300
+ G+
Sbjct: 65 QPTGGQ 70
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 141 bits (357), Expect = 2e-38
Identities = 61/237 (25%), Positives = 108/237 (45%), Gaps = 40/237 (16%)
Query: 641 VSIKNGNFSWDSKSPT-LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASV 699
++ +N F + SP L NINL I G ++ IVG +G GK++L + P V
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG-QV 60
Query: 700 VIRGT-------------VAYVPQISWIFNATLRKNILFGSE-FDPAKYWKTVDVSALQH 745
+I G V V Q + + N ++ NI + K ++
Sbjct: 61 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHD 120
Query: 746 DLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFNSC---------------------- 783
+ L + T +GE+G +SGGQ+QR+++ARA+ N+
Sbjct: 121 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 180
Query: 784 -IKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEEL-SKHGRLFQKLME 838
+ + +G+T I++ ++L + + DRII++ +G I E+G +EL S+ L+ L +
Sbjct: 181 NMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 237
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 75.0 bits (184), Expect = 2e-15
Identities = 20/58 (34%), Positives = 36/58 (62%)
Query: 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
I F ++ RY+P+ P +L ++ ++ E +GIVGR+G+GKS++ + R E G+
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 81.4 bits (201), Expect = 2e-17
Identities = 46/226 (20%), Positives = 90/226 (39%), Gaps = 46/226 (20%)
Query: 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASV 699
V ++N + + ++ +NL I G + ++G +G GKT+ + + G P + +
Sbjct: 6 EVKLENLTKRFGNF-TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP-TEGRI 63
Query: 700 VIRGT-----------VAYVPQISWIF-NATLRKNILFGSEFDPAKYWKTVDVSALQHDL 747
++ V Q ++ + T+ +NI F P K K +
Sbjct: 64 YFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAF-----PLKIKKFPKDEIDKRVR 118
Query: 748 DLLPDRDLTEIGERGV-NISGGQKQRVSMARAV---------------FNSCIKEELR-- 789
+ E+ R +SGGQ+QRV++ARA+ ++ ++ +R
Sbjct: 119 WAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAE 178
Query: 790 --------GKTRILVTNQLHFLPHV-DRIILVSEGMIKEEGSFEEL 826
T I VT+ + DRI +++ G + + GS E+
Sbjct: 179 IKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEV 224
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 49.8 bits (119), Expect = 7e-07
Identities = 13/58 (22%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
+K E++ R+ ++ L+ T+ E + ++G +G GK++ L + + E G
Sbjct: 7 VKLENLTKRFGNF--TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR 62
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 79.1 bits (195), Expect = 7e-17
Identities = 44/226 (19%), Positives = 91/226 (40%), Gaps = 45/226 (19%)
Query: 641 VSIKNGNFSWDSKSPT---LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP---- 693
+ +KN ++ L N+NL+I G V+I+G +G GK+++++ + P
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 694 ------------LKDASVVIRGTVAYVPQISWIF-NATLRKNILFGSEFDPAKYWKTVDV 740
+ + + R + +V Q + T +N+ F +
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 741 SALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFNS------------------ 782
+ + + + + +SGGQ+QRV++ARA+ N+
Sbjct: 122 RKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTG 181
Query: 783 -CIKEELR------GKTRILVTNQLHFLPHVDRIILVSEGMIKEEG 821
I + L+ GKT ++VT+ ++ +RII + +G ++ E
Sbjct: 182 EKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREE 227
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 49.1 bits (117), Expect = 9e-07
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 1243 IKFEDVVLRY--RPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
IK ++V Y E+ L ++ + E V I+G +G+GKS+MLN + + + GE
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 78.4 bits (193), Expect = 1e-16
Identities = 39/212 (18%), Positives = 75/212 (35%), Gaps = 43/212 (20%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP--------------LKDASVVIR 702
+ I+L +P G +V ++G G GKT+ +SA+ G + +
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM 81
Query: 703 GTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERG 762
G T+ +N++ G+ K D+ + L +R + + G
Sbjct: 82 GIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKER----LKQLG 137
Query: 763 VNISGGQKQRVSMARAV----------------------FNSCIKEELR--GKTRILVTN 798
+SGG++Q +++ RA+ + +++ G T +LV
Sbjct: 138 GTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQ 197
Query: 799 QLHFLPHV-DRIILVSEGMIKEEGSFEELSKH 829
V ++ G I EG EL +
Sbjct: 198 NALGALKVAHYGYVLETGQIVLEGKASELLDN 229
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 48.0 bits (114), Expect = 3e-06
Identities = 13/58 (22%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
++ + + + Y + G+ V + V ++G GAGK++ L+A+ +V ++G+
Sbjct: 7 LEVQSLHVYYGAI--HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGK 62
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 76.2 bits (187), Expect = 7e-16
Identities = 43/227 (18%), Positives = 93/227 (40%), Gaps = 42/227 (18%)
Query: 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASV 699
AV +K+ K L I+ +I G + ++G G GKT+ + + + P
Sbjct: 2 AVVVKDLRKRIGKK-EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT 60
Query: 700 V-----------IRGTVAYVPQISWIF-NATLRKNILFGSEFDPAKYWKTVDVSALQHDL 747
V +R ++Y+P+ + + N + + F + F + + ++ ++
Sbjct: 61 VFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEI 120
Query: 748 DLLPDRDLTEIGERGVNISGGQKQRVSMARAVFNS-------------------CIKEEL 788
L ++ I +R S G +++ +ARA+ + +++ L
Sbjct: 121 AGLGEK----IKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKIL 176
Query: 789 R-----GKTRILVTNQLHFLPHV-DRIILVSEGMIKEEGSFEELSKH 829
+ G T ++ ++ + + + DRI L+ G I E G+ EEL +
Sbjct: 177 KQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 223
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 53.5 bits (128), Expect = 4e-08
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 1241 GSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
G++ +D+ R + +L G+SF + E G++G GAGK++ L + +++ G
Sbjct: 1 GAVVVKDLRKRIGKK--EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGI 58
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 75.4 bits (185), Expect = 1e-15
Identities = 38/218 (17%), Positives = 76/218 (34%), Gaps = 39/218 (17%)
Query: 652 SKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQI 711
++S L ++ ++ G ++ +VG G GK++L++ M G S+ G
Sbjct: 10 AESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG--KGSIQFAGQPLEAWSA 67
Query: 712 SWIFNA----TLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTE-IGERGVNIS 766
+ + + ++ F + D + + D+ L + +G +S
Sbjct: 68 TKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLS 127
Query: 767 GGQKQRVSMARAVFNSC--------------------------IKEELR-----GKTRIL 795
GG+ QRV +A V + + L G ++
Sbjct: 128 GGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVM 187
Query: 796 VTNQLHF-LPHVDRIILVSEGMIKEEGSFEELSKHGRL 832
++ L+ L H R L+ G + G EE+ L
Sbjct: 188 SSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPNL 225
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 48.0 bits (114), Expect = 2e-06
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Query: 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIV 1294
++ +DV R L LS V E + +VG GAGKS++L + +
Sbjct: 4 MQLQDVAESTR------LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT 49
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 75.4 bits (185), Expect = 1e-15
Identities = 50/225 (22%), Positives = 90/225 (40%), Gaps = 46/225 (20%)
Query: 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV 700
V ++N +W +INLDI G V VG +G GK++L+ + G +
Sbjct: 1 VQLQNVTKAWGEV-VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI-TSGDLF 58
Query: 701 IRGT-----------VAYVPQISWIF-NATLRKNILFGSEFDPAKYWKTVDVSALQHDLD 748
I V V Q ++ + ++ +N+ FG + A K V + +
Sbjct: 59 IGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKL--AGAKKEVINQRVNQVAE 116
Query: 749 LLPDRDLTEIGERGV-NISGGQKQRVSMARAVFNS-------------------CIKEEL 788
+L L + +R +SGGQ+QRV++ R + ++ E+
Sbjct: 117 VLQ---LAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEI 173
Query: 789 R------GKTRILVTNQLHFLPHV-DRIILVSEGMIKEEGSFEEL 826
G+T I VT+ + D+I+++ G + + G EL
Sbjct: 174 SRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 218
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 48.8 bits (116), Expect = 1e-06
Identities = 12/58 (20%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
++ ++V + V ++ + E V VG +G GKS++L + + + G+
Sbjct: 1 VQLQNVTKAWGEV--VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGD 56
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 75.4 bits (185), Expect = 2e-15
Identities = 46/226 (20%), Positives = 88/226 (38%), Gaps = 40/226 (17%)
Query: 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP------ 693
V + + + + ++L++ G + ++G +G GKT+ + + G P
Sbjct: 3 GVRLVDVWKVFGEV-TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIY 61
Query: 694 LKDASVVIRGTVAYVPQISWIFNATLRKNILF------GSEFDPAKYWKTVDVSALQHDL 747
+ D V +VP + L+ + P K K Q
Sbjct: 62 IGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVR 121
Query: 748 DLLPDRDLTEIGERGVN-ISGGQKQRVSMARAVFNS-------------------CIKEE 787
++ LTE+ R +SGGQ+QRV++ RA+ ++ E
Sbjct: 122 EVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAE 181
Query: 788 LR------GKTRILVTNQLHFLPHV-DRIILVSEGMIKEEGSFEEL 826
L+ G T I VT+ + DRI +++ G++++ GS +E+
Sbjct: 182 LKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 48.8 bits (116), Expect = 1e-06
Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 1242 SIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
++ DV + + +S V E + ++G +G GK++ L + + E RG+
Sbjct: 3 GVRLVDVWKVFGEV--TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQ 59
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 74.5 bits (183), Expect = 3e-15
Identities = 47/235 (20%), Positives = 97/235 (41%), Gaps = 51/235 (21%)
Query: 641 VSIKNGNFSWDSKSPT---LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP---- 693
+ + N + + T L+N++L +P G + ++G +G GK++L+ + P
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 694 -----------LKDASVVIRGTVAYVPQ-ISWIFNATLRKNILFGSEFDPAKYWKTVDVS 741
+ R + + Q + + + T+ N+ P + T
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVAL-----PLELDNTPKDE 116
Query: 742 ALQHDLDLLPDRDLTEIGERGV-NISGGQKQRVSMARAVFNS------------------ 782
+ +LL L + + N+SGGQKQRV++ARA+ ++
Sbjct: 117 VKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATT 176
Query: 783 -CIKEELR------GKTRILVTNQLHFLPHV-DRIILVSEGMIKEEGSFEELSKH 829
I E L+ G T +L+T+++ + + D + ++S G + E+ + E+ H
Sbjct: 177 RSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSH 231
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 49.5 bits (118), Expect = 8e-07
Identities = 13/60 (21%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 1243 IKFEDVVLRYRPELPPV--LHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
IK ++ + + L+ +S V + G++G +GAGKS+++ + + G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 74.1 bits (182), Expect = 6e-15
Identities = 49/245 (20%), Positives = 93/245 (37%), Gaps = 64/245 (26%)
Query: 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP------- 693
+ + + + + L ++L G +++I+G +G GK++ + + P
Sbjct: 3 LHVIDLHKRYGGH-EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIV 61
Query: 694 ------------------LKDASVVIRGTVAYVPQ-ISWIFNATLRKNILFGSEFDPAKY 734
K+ ++R + V Q + + T+ +N++ P +
Sbjct: 62 NGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEA----PIQV 117
Query: 735 WKTVDVSALQHDLDLLPDRDLTEIGERGVN-----ISGGQKQRVSMARA----------- 778
A + L L I ER +SGGQ+QRVS+ARA
Sbjct: 118 LGLSKHDARERALKYL---AKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFD 174
Query: 779 -------------VFNSCIKEELRGKTRILVTNQLHFLPHV-DRIILVSEGMIKEEGSFE 824
V + GKT ++VT+++ F HV +I + +G I+EEG E
Sbjct: 175 EPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPE 234
Query: 825 ELSKH 829
++ +
Sbjct: 235 QVFGN 239
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 51.8 bits (124), Expect = 2e-07
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
+ D+ RY VL G+S + + I+G +G+GKS+ L + + + G
Sbjct: 3 LHVIDLHKRYGGH--EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGA 58
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 73.5 bits (180), Expect = 1e-14
Identities = 40/221 (18%), Positives = 82/221 (37%), Gaps = 48/221 (21%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP-------------LKDASVVIRG 703
L +++ + G + I+G G GK++L++ + G L K+ + +
Sbjct: 20 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 79
Query: 704 TVAYVPQISWIF-NATLRKNILFGSEFDP--------AKYWKTVDVSALQHDLDLLPDRD 754
+ Q T+ +N+L G K W + ++ +L
Sbjct: 80 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 139
Query: 755 LTEIGERGV-NISGGQKQRVSMARAVFNS-------------------CIKEELR----- 789
L+ + +R +SGGQ + V + RA+ + I +
Sbjct: 140 LSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK 199
Query: 790 GKTRILVTNQLHFLPHV-DRIILVSEGMIKEEGSFEELSKH 829
G T +++ ++L + + D + ++ G I EG EE K+
Sbjct: 200 GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 240
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 51.5 bits (123), Expect = 2e-07
Identities = 14/58 (24%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
++ E++V + L G+S +V+ + I+G G+GKS+++N + ++ + G
Sbjct: 5 LRTENIVKYFGEF--KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGR 60
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 71.9 bits (176), Expect = 1e-14
Identities = 36/204 (17%), Positives = 79/204 (38%), Gaps = 41/204 (20%)
Query: 642 SIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV- 700
I++ + +D P L I + I G++V G G GKT+L+ + L PLK +
Sbjct: 4 EIRDLSVGYDK--PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYN 61
Query: 701 ------IRGTVAYVPQ-ISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDR 753
++G + ++P+ I ++ + + K K +D L
Sbjct: 62 GVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNK-------NEIMDALESV 114
Query: 754 DLTEIGERGVNISGGQKQRVSMARAVFNSC-----------------------IKEELRG 790
++ ++ ++ +S G +RV +A + + I E L+
Sbjct: 115 EVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE 174
Query: 791 KTRILVTNQLHFLPHVDRIILVSE 814
K ++++++ L + D + +
Sbjct: 175 KGIVIISSR-EELSYCDVNENLHK 197
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 52.2 bits (125), Expect = 5e-08
Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVE 1295
++ D+ + Y PVL ++ T+ V G G GK+++L + ++
Sbjct: 3 LEIRDLSVGYDK---PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK 52
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 67.4 bits (164), Expect = 6e-13
Identities = 48/226 (21%), Positives = 89/226 (39%), Gaps = 46/226 (20%)
Query: 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV 700
+ I++ + W + +L N++L + G I+G TG GKT + + G P ++
Sbjct: 2 IEIESLSRKWKNF--SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILL 59
Query: 701 I----------RGTVAYVPQISWIF-NATLRKNILFGSEFDPAKYWKTVDVSALQHDLDL 749
+ +A+V Q +F + ++KN+ F K V DL +
Sbjct: 60 DGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEF--GMRMKKIKDPKRVLDTARDLKI 117
Query: 750 LPDRDLTEIGERGVNISGGQKQRVSMARAVFNSC----------------------IKEE 787
D + +SGG++QRV++ARA+ + +
Sbjct: 118 EHLLD-----RNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSV 172
Query: 788 LRGKTRILVTNQLHFLPHV----DRIILVSEGMIKEEGSFEELSKH 829
L K ++ V + H DRI +V +G + + G EE+ +
Sbjct: 173 LHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 47.0 bits (111), Expect = 4e-06
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVE 1295
I+ E + +++ L LS V E I+G TGAGK+ L +
Sbjct: 2 IEIESLSRKWKNF---SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV 51
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 61.6 bits (149), Expect = 7e-11
Identities = 44/232 (18%), Positives = 87/232 (37%), Gaps = 51/232 (21%)
Query: 640 AVSIKNGNFSWDSKS-PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDAS 698
+ +KN + + L N+N++I G I+G +G GKT+ + + G P
Sbjct: 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVP-STGE 61
Query: 699 VVIRGT----------------VAYVPQ-ISWIFNATLRKNILFGSEFDPAKYWKTVDVS 741
+ + V Q + N T +NI F P K
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAF-----PLTNMKMSKEE 116
Query: 742 ALQHDLDLLPDRDLTEIGERGVN-ISGGQKQRVSMARAVFNSC----------------- 783
+ ++ D+ + +SG Q+QRV++ARA+
Sbjct: 117 IRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMR 176
Query: 784 -----IKEELR---GKTRILVTNQLHFLPHV-DRIILVSEGMIKEEGSFEEL 826
+ +E++ G T ++V++ + + DR+ ++ +G + + G E+L
Sbjct: 177 DSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 51.2 bits (122), Expect = 2e-07
Identities = 12/57 (21%), Positives = 27/57 (47%)
Query: 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERG 1299
I ++V ++ L ++ + E+ GI+G +GAGK++ + + + G
Sbjct: 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTG 60
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 59.6 bits (144), Expect = 4e-10
Identities = 39/207 (18%), Positives = 78/207 (37%), Gaps = 46/207 (22%)
Query: 659 NINLDIPVGS-LVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGT-----------VA 706
+N+D +G ++G TG GK+ + + G + P V + G +
Sbjct: 15 RLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKP-DRGEVRLNGADITPLPPERRGIG 73
Query: 707 YVPQISWIFNA-TLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNI 765
+VPQ +F ++ +NI +G ++ + L L + + +
Sbjct: 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDR----RVREMAEKLGIAHL--LDRKPARL 127
Query: 766 SGGQKQRVSMARAVFNSC----------------------IKEELRGKTRILVTNQLHFL 803
SGG++QRV++ARA+ ++ + + + + H L
Sbjct: 128 SGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDL 187
Query: 804 PHV----DRIILVSEGMIKEEGSFEEL 826
D + ++ G I E+G +EL
Sbjct: 188 IEAAMLADEVAVMLNGRIVEKGKLKEL 214
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 54.2 bits (128), Expect = 5e-08
Identities = 43/304 (14%), Positives = 98/304 (32%), Gaps = 3/304 (0%)
Query: 325 FGGRFWLGGLFKIGNDLSQFVGPVLLNHLL-QSMQRGDPAWIGYIYAFLIFVGVSFGVLT 383
F + G+ I N S LL LL + D + + ++ +I + + G+ +
Sbjct: 14 FKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITS 73
Query: 384 EAQYFQNVWRVGFRLRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQ 443
+ W G + + K ++ + S
Sbjct: 74 YISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGA 133
Query: 444 LHGLWSAPFRITLSMVLLYQQLGVASLLGSLMLVLMVPLQTFIISKMRKLTKEGLQWTDR 503
L + I ++++ S++ ++ ++ + + R ++K +
Sbjct: 134 LITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQ 193
Query: 504 RVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSIPVVV 563
+ ++L V + ++ R + + K S+ + I+ I +
Sbjct: 194 VTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLA 253
Query: 564 T--VVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELL 621
V+ +F + LT S L PL L N+ +Q + Q L +L
Sbjct: 254 LAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAIL 313
Query: 622 LAEE 625
+E+
Sbjct: 314 DSEQ 317
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 50.3 bits (118), Expect = 7e-07
Identities = 30/305 (9%), Positives = 87/305 (28%), Gaps = 10/305 (3%)
Query: 327 GRFWLGGLFKIGNDLSQFVGPVLLNHLLQSM-QRGDPAWIGYIYAFLIFVGVSFGVLTEA 385
R + + I + P+L+ + + + ++ I +G++ +
Sbjct: 14 YRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIV 73
Query: 386 QYFQNVWRVGFRLRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQLH 445
+ R ++ + H + + + + Q
Sbjct: 74 RPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKD 133
Query: 446 GLWSAPFRITLSMVLLYQQLGVASLLGSLMLVLMVPLQTFIISKMRKLTKEGLQWTDRRV 505
+ + I L + + L + L + + + + F I + + T R
Sbjct: 134 FILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERS 193
Query: 506 SLTNEILAAMD---------TVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFIL 556
E+ + ++ ++ + +F +
Sbjct: 194 QALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINT 253
Query: 557 NSIPVVVTVVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQR 616
+ + V+ G + + G +T + +L PL L + + + S+ R
Sbjct: 254 VTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDR 313
Query: 617 LEELL 621
+ +L+
Sbjct: 314 VFQLI 318
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 43.1 bits (100), Expect = 6e-05
Identities = 24/166 (14%), Positives = 48/166 (28%), Gaps = 21/166 (12%)
Query: 670 VAIVGGTGEGKTSLVSAMLGELPP------------LKDASVVIRGTVAYVPQISWIFNA 717
+ I G G GKT+LV ++ L + + + +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSK 62
Query: 718 TLRKNILFGSEFDPAKYWKTVDVSALQHDLD--LLPDRDLTEIGERGVNISGGQKQRVSM 775
L GS +Y++ + + L+ R + I E G +K R +
Sbjct: 63 FFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLV 122
Query: 776 ARAVFNSCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEG 821
+ + + + P V I + ++ E
Sbjct: 123 RQIMHD-------PNVNVVATIPIRDVHPLVKEIRRLPGAVLIELT 161
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Score = 37.4 bits (85), Expect = 0.004
Identities = 14/19 (73%), Positives = 15/19 (78%)
Query: 1272 KVGIVGRTGAGKSSMLNAL 1290
KV I GR AGKSS+LNAL
Sbjct: 3 KVVIAGRPNAGKSSLLNAL 21
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1303 | |||
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 99.98 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 99.98 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 99.97 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 99.97 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 99.97 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 99.97 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 99.97 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 99.97 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 99.97 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 99.97 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 99.96 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.96 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 99.95 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.95 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.94 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.94 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 99.92 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 99.9 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 99.72 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 99.71 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 99.7 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 99.7 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 99.65 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 99.43 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 99.42 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 99.4 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 99.4 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 99.4 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 99.4 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 99.39 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 99.38 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 99.37 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 99.34 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 99.33 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.0 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 98.71 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.05 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 96.68 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 96.62 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.59 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 96.53 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 96.41 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 96.4 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 96.35 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.27 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 96.2 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 96.15 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.04 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 95.97 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.97 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 95.62 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 95.59 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.58 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 95.48 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.46 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.13 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 94.95 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.93 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 94.87 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 94.73 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 94.71 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 94.7 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 94.61 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 94.51 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 94.5 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 94.45 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 94.38 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 94.37 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 94.33 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 94.2 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 94.18 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 94.17 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 94.09 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.08 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 93.94 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 93.86 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 93.78 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 93.69 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 93.56 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 93.55 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 93.53 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 93.48 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 93.38 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 93.19 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 93.16 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 93.11 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 93.05 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 93.05 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 93.01 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 93.0 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 93.0 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 92.97 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 92.85 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 92.84 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 92.81 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 92.75 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 92.74 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 92.7 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 92.66 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 92.59 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 92.5 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 92.49 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 92.48 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 92.46 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 92.4 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 92.33 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 92.3 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 92.3 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 92.22 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 92.22 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 92.01 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 91.94 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 91.94 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 91.93 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 91.83 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 91.82 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 91.81 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 91.73 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 91.63 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 91.6 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 91.59 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 91.52 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 91.42 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 91.39 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 91.37 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 91.24 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 91.22 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 91.2 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 91.06 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 91.02 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 90.96 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 90.77 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 90.74 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 90.71 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 90.69 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 90.67 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 90.67 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 90.62 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 90.61 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 90.52 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 90.51 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 90.46 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 90.45 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 90.41 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 90.4 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 90.37 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 90.21 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 90.19 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 90.11 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 90.06 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 90.04 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 90.02 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 89.93 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 89.81 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 89.79 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 89.64 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 89.46 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 89.33 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 89.29 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 89.23 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 89.21 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 89.2 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 89.13 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 89.13 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 89.12 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 89.1 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 89.09 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 89.09 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 89.05 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 88.89 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 88.81 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 88.73 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 88.72 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 88.6 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 88.48 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 88.37 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 88.37 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 88.21 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 88.12 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 88.08 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 88.06 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 87.96 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 87.93 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 87.91 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 87.82 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 87.72 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 87.72 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 87.71 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 87.61 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 87.55 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 87.29 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 87.22 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 87.15 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 87.06 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 87.02 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 86.96 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 86.94 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 86.93 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 86.85 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 86.84 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 86.84 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 86.83 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 86.81 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 86.67 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 86.5 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 86.39 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 86.3 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 86.21 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 86.21 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 86.05 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 85.95 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 85.92 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 85.85 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 85.79 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 85.79 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 85.79 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 85.7 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 85.62 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 85.61 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 85.58 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 85.5 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 85.41 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 85.4 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 85.37 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 85.24 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 85.16 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 85.06 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 84.86 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 84.83 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 84.79 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 84.63 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 84.56 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 84.5 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 84.49 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 84.48 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 84.4 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 84.35 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 84.23 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 83.92 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 83.87 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 83.86 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 83.77 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 83.69 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 83.61 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 83.4 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 83.38 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 83.36 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 83.19 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 82.68 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 82.39 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 82.07 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 82.02 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 82.02 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 81.56 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 81.51 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 81.37 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 81.18 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 80.74 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 80.31 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=349.23 Aligned_cols=204 Identities=29% Similarity=0.490 Sum_probs=183.1
Q ss_pred CCCCCCEEEEEEEEEECCC-CCCCCEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEC-----------
Q ss_conf 9999928999338972899-9853005657249969999949999867899998469999999669994-----------
Q 000746 635 EPELPAVSIKNGNFSWDSK-SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR----------- 702 (1303)
Q Consensus 635 ~~~~~~i~~~~~~f~~~~~-~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llge~~~~~g~~~~~~----------- 702 (1303)
+.....|+++|++|+|+++ .++|+|+||+|++|++++|+|++|||||||+++|+|.++|.+| .+.++
T Consensus 11 ~~~~g~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G-~I~i~g~~i~~~~~~~ 89 (255)
T d2hyda1 11 EIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSG-QILIDGHNIKDFLTGS 89 (255)
T ss_dssp CCCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEE-EEEETTEEGGGSCHHH
T ss_pred CCCCCEEEEEEEEEEECCCCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCC-CCCCCCEECCCCCHHH
T ss_conf 777887999988999599997606443899839989999889998099999999712786300-0153998753078888
Q ss_pred --CEEEEECCCCCCCCCCHHHHHCCCCC-CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf --91799816865666558899704999-995658999989823888510999997311489887766899999999999
Q 000746 703 --GTVAYVPQISWIFNATLRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAV 779 (1303)
Q Consensus 703 --~~iayv~Q~pwl~~~TireNI~~g~~-~d~~~y~~vi~ac~L~~di~~lp~gd~T~ige~G~~LSGGQkqRiaLARAi 779 (1303)
..++||+|+|++|++||+|||.+|.+ .++++..++++.+++.+++..+|+|++|.+|++|.+|||||||||+||||+
T Consensus 90 lr~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal 169 (255)
T d2hyda1 90 LRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIF 169 (255)
T ss_dssp HHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHH
T ss_pred HHHEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf 63414565101568998799998515867999999999999697999973624201033388898499999999999998
Q ss_pred HH-----------------------HHHHHHCCCCEEEEEECCCCCCCCCCEEEEEECCEEEEECCHHHHHHCCHHHHHH
Q ss_conf 98-----------------------9986750998799992499940014979999398799943978897334599999
Q 000746 780 FN-----------------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKL 836 (1303)
Q Consensus 780 ~~-----------------------~~i~~~l~~~TvilvTH~~~~l~~aD~ii~l~~G~i~~~G~~~~l~~~~~~~~~~ 836 (1303)
+. +.+....+++|+|+|||+++.++.||+|++|++|+|++.|+++|++++++.|+++
T Consensus 170 ~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~~~~y~~l 249 (255)
T d2hyda1 170 LNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHL 249 (255)
T ss_dssp HHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTTSHHHHH
T ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHHH
T ss_conf 55998999837654479779999999999875388899996899999859999999899999988999998688499999
Q ss_pred HHH
Q ss_conf 997
Q 000746 837 MEN 839 (1303)
Q Consensus 837 ~~~ 839 (1303)
++.
T Consensus 250 ~~~ 252 (255)
T d2hyda1 250 YSI 252 (255)
T ss_dssp HTT
T ss_pred HHH
T ss_conf 997
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.4e-45 Score=342.66 Aligned_cols=199 Identities=29% Similarity=0.455 Sum_probs=179.1
Q ss_pred CEEEEEEEEEECCCC-CCCCEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEC-------------CEE
Q ss_conf 289993389728999-853005657249969999949999867899998469999999669994-------------917
Q 000746 640 AVSIKNGNFSWDSKS-PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR-------------GTV 705 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~-~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llge~~~~~g~~~~~~-------------~~i 705 (1303)
.|+++|++|+|+.+. ++|+|+||+|++|++++|+|++|||||||+++|+|.++|.+| .+.++ +++
T Consensus 1 eI~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G-~I~i~g~~i~~~~~~~lr~~i 79 (241)
T d2pmka1 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG-QVLIDGHDLALADPNWLRRQV 79 (241)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEE-EEEETTEETTTSCHHHHHHHE
T ss_pred CEEEEEEEEEECCCCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCC-EEEECCEEECCCCHHHHHCEE
T ss_conf 9299999999089996037424899849999999999999899999999735788888-999999994400246553528
Q ss_pred EEECCCCCCCCCCHHHHHCCCCC-CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH----
Q ss_conf 99816865666558899704999-9956589999898238885109999973114898877668999999999999----
Q 000746 706 AYVPQISWIFNATLRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF---- 780 (1303)
Q Consensus 706 ayv~Q~pwl~~~TireNI~~g~~-~d~~~y~~vi~ac~L~~di~~lp~gd~T~ige~G~~LSGGQkqRiaLARAi~---- 780 (1303)
+||+|+|++|++||+|||.++.+ .+++++..+++.|.+.+++..+|.|++|.+|++|.+|||||||||+||||++
T Consensus 80 ~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ 159 (241)
T d2pmka1 80 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 159 (241)
T ss_dssp EEECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 89824465578400035223575543888999999975578887632013443278788669889898754434441651
Q ss_pred -------------------HHHHHHHCCCCEEEEEECCCCCCCCCCEEEEEECCEEEEECCHHHHHHC-CHHHHHHHHH
Q ss_conf -------------------8998675099879999249994001497999939879994397889733-4599999997
Q 000746 781 -------------------NSCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKH-GRLFQKLMEN 839 (1303)
Q Consensus 781 -------------------~~~i~~~l~~~TvilvTH~~~~l~~aD~ii~l~~G~i~~~G~~~~l~~~-~~~~~~~~~~ 839 (1303)
.+.+....+++|+|+|||+++.+..||+|++|++|+|+++|++++++++ ++.|.++++.
T Consensus 160 ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~~ 238 (241)
T d2pmka1 160 ILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 238 (241)
T ss_dssp EEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHH
T ss_conf 3556477655598999999999999858998999978899998499999998999999889999982998789999998
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=4.2e-45 Score=339.16 Aligned_cols=201 Identities=29% Similarity=0.505 Sum_probs=182.0
Q ss_pred CCCEEEEEEEEEECCC-CCCCCEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECC-------------
Q ss_conf 9928999338972899-98530056572499699999499998678999984699999996699949-------------
Q 000746 638 LPAVSIKNGNFSWDSK-SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRG------------- 703 (1303)
Q Consensus 638 ~~~i~~~~~~f~~~~~-~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llge~~~~~g~~~~~~~------------- 703 (1303)
...|+++|++|+|+.+ .++|+|+||+|++|++++|+||+|||||||+++|+|.++|.+| .+.+++
T Consensus 11 ~g~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G-~I~i~g~~i~~~~~~~~r~ 89 (253)
T d3b60a1 11 TGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEG-HILMDGHDLREYTLASLRN 89 (253)
T ss_dssp CCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEE-EEEETTEETTTBCHHHHHH
T ss_pred CEEEEEEEEEEEECCCCCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCC-EEEECCCCCCHHHHHHHHH
T ss_conf 307999988999299997635332899859999999999998599999998621688846-8987880121110665420
Q ss_pred EEEEECCCCCCCCCCHHHHHCCCC--CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 179981686566655889970499--999565899998982388851099999731148988776689999999999998
Q 000746 704 TVAYVPQISWIFNATLRKNILFGS--EFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN 781 (1303)
Q Consensus 704 ~iayv~Q~pwl~~~TireNI~~g~--~~d~~~y~~vi~ac~L~~di~~lp~gd~T~ige~G~~LSGGQkqRiaLARAi~~ 781 (1303)
.++|++|+|++|++|+++|+.++. .++++++.++++.|++.++++.+|+|++|.+|++|.+|||||||||+||||++.
T Consensus 90 ~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~ 169 (253)
T d3b60a1 90 QVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR 169 (253)
T ss_dssp TEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 68799502544786202433205722089999999999981799997355441014348889849999999999999954
Q ss_pred -----------------------HHHHHHCCCCEEEEEECCCCCCCCCCEEEEEECCEEEEECCHHHHHHCCHHHHHHHH
Q ss_conf -----------------------998675099879999249994001497999939879994397889733459999999
Q 000746 782 -----------------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLME 838 (1303)
Q Consensus 782 -----------------------~~i~~~l~~~TvilvTH~~~~l~~aD~ii~l~~G~i~~~G~~~~l~~~~~~~~~~~~ 838 (1303)
+.+....+++|+|+|||+++.+..||+|++|++|+|+++|+++|++++++.|+++++
T Consensus 170 ~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~~~~y~~l~~ 249 (253)
T d3b60a1 170 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHK 249 (253)
T ss_dssp CCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHTSSHHHHHH
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHHHHH
T ss_conf 99889951644458988999999999875227889999887999985999999989999998899999868939999999
Q ss_pred H
Q ss_conf 7
Q 000746 839 N 839 (1303)
Q Consensus 839 ~ 839 (1303)
.
T Consensus 250 ~ 250 (253)
T d3b60a1 250 M 250 (253)
T ss_dssp H
T ss_pred H
T ss_conf 7
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=9.8e-45 Score=336.06 Aligned_cols=200 Identities=28% Similarity=0.552 Sum_probs=180.3
Q ss_pred CEEEEEEEEEECCCCCCCCEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEE------------ECCEEEE
Q ss_conf 2899933897289998530056572499699999499998678999984699999996699------------9491799
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------IRGTVAY 707 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llge~~~~~g~~~~------------~~~~iay 707 (1303)
.++++|++|+|+++.++|+|+||++++|++++|+||+|||||||+++|+|.++|.+|.... ++.+|+|
T Consensus 1 mle~knvsf~Y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 80 (242)
T d1mv5a_ 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (242)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred CEEEEEEEEECCCCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHEEE
T ss_conf 97999889987999841422589985999999999999979999999999609898779889988442467888743679
Q ss_pred ECCCCCCCCCCHHHHHCCCCC--CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH----
Q ss_conf 816865666558899704999--99565899998982388851099999731148988776689999999999998----
Q 000746 708 VPQISWIFNATLRKNILFGSE--FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN---- 781 (1303)
Q Consensus 708 v~Q~pwl~~~TireNI~~g~~--~d~~~y~~vi~ac~L~~di~~lp~gd~T~ige~G~~LSGGQkqRiaLARAi~~---- 781 (1303)
|+|+|++|++||+||+.++.. .+++..+++++.+.+.+.+..+|++.+|.+|++|.+|||||||||+||||++.
T Consensus 81 v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~i 160 (242)
T d1mv5a_ 81 VSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKI 160 (242)
T ss_dssp ECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred ECCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 75665457853454301244555423567789999975554203742101523687898799999999999998529989
Q ss_pred -------------------HHHHHHCCCCEEEEEECCCCCCCCCCEEEEEECCEEEEECCHHHHHHCCHHHHHHHHH
Q ss_conf -------------------9986750998799992499940014979999398799943978897334599999997
Q 000746 782 -------------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLMEN 839 (1303)
Q Consensus 782 -------------------~~i~~~l~~~TvilvTH~~~~l~~aD~ii~l~~G~i~~~G~~~~l~~~~~~~~~~~~~ 839 (1303)
+.+....+++|+|+|||+++.+..||+|++|++|+|+++|+++||+++++.|++++..
T Consensus 161 lilDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~~~~y~~l~~~ 237 (242)
T d1mv5a_ 161 LMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSE 237 (242)
T ss_dssp EEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHHHHHC
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCHHHHHHHHH
T ss_conf 99658865569889999988788871799899997879999849999999899999999999998689699999999
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.4e-43 Score=326.24 Aligned_cols=198 Identities=24% Similarity=0.423 Sum_probs=174.1
Q ss_pred CCEEEEEEEEEECCCC--CCCCEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECC-------------
Q ss_conf 9289993389728999--8530056572499699999499998678999984699999996699949-------------
Q 000746 639 PAVSIKNGNFSWDSKS--PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRG------------- 703 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~--~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llge~~~~~g~~~~~~~------------- 703 (1303)
..|+++|++|+|++++ ++|+|+||+|++|++++|+||+|||||||+++|+|.++|.+| .+.+++
T Consensus 10 g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G-~I~i~g~~i~~~~~~~~r~ 88 (251)
T d1jj7a_ 10 GLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGG-QLLLDGKPLPQYEHRYLHR 88 (251)
T ss_dssp CCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEE-EEEETTEEGGGBCHHHHHH
T ss_pred CEEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCEECCHHHHHHHHH
T ss_conf 369999989988999999767443899849989999999998499999998614378768-9988998531101378887
Q ss_pred EEEEECCCCCCCCCCHHHHHCCCCC--CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 1799816865666558899704999--99565899998982388851099999731148988776689999999999998
Q 000746 704 TVAYVPQISWIFNATLRKNILFGSE--FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN 781 (1303)
Q Consensus 704 ~iayv~Q~pwl~~~TireNI~~g~~--~d~~~y~~vi~ac~L~~di~~lp~gd~T~ige~G~~LSGGQkqRiaLARAi~~ 781 (1303)
.++||+|+|++|++||+|||.+|.. .+.++.....+.+++.+.++.+|+|.+|.++++|.+|||||||||+||||++.
T Consensus 89 ~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~~ 168 (251)
T d1jj7a_ 89 QVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIR 168 (251)
T ss_dssp HEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHTT
T ss_pred HHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEEEECCCC
T ss_conf 76540456500276346554542101302788999999998999998561211136751676689547048998604456
Q ss_pred -----------------------HHHHHHC--CCCEEEEEECCCCCCCCCCEEEEEECCEEEEECCHHHHHHCCHHHHHH
Q ss_conf -----------------------9986750--998799992499940014979999398799943978897334599999
Q 000746 782 -----------------------SCIKEEL--RGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKL 836 (1303)
Q Consensus 782 -----------------------~~i~~~l--~~~TvilvTH~~~~l~~aD~ii~l~~G~i~~~G~~~~l~~~~~~~~~~ 836 (1303)
+.+.+.. .++|+|+|||+++.+..||+|++|++|+|+++|+++|++++++.|+++
T Consensus 169 ~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~~~~y~~l 248 (251)
T d1jj7a_ 169 KPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYWAM 248 (251)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHTSHHHHH
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHHH
T ss_conf 87078716757656853689999999997650698999995979999859999999899999988999998597588999
Q ss_pred H
Q ss_conf 9
Q 000746 837 M 837 (1303)
Q Consensus 837 ~ 837 (1303)
+
T Consensus 249 ~ 249 (251)
T d1jj7a_ 249 V 249 (251)
T ss_dssp H
T ss_pred H
T ss_conf 6
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.1e-42 Score=321.29 Aligned_cols=196 Identities=37% Similarity=0.618 Sum_probs=172.8
Q ss_pred CCEEEEEEEEEECCCCCCCCEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCEEEEECCCCCCCCCC
Q ss_conf 92899933897289998530056572499699999499998678999984699999996699949179981686566655
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISWIFNAT 718 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llge~~~~~g~~~~~~~~iayv~Q~pwl~~~T 718 (1303)
..+.++|++| . ..|+|+|+||+|++|++++|+||+|||||||+++|+|+++|.+| .+.++++++|++|+||++++|
T Consensus 37 ~~i~~~~~~~--~-g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G-~I~~~g~i~~v~Q~~~l~~~t 112 (281)
T d1r0wa_ 37 NNVSFSHLCL--V-GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEG-IIKHSGRVSFCSQFSWIMPGT 112 (281)
T ss_dssp ---CHHHHHH--T-TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEE-EEECCSCEEEECSSCCCCSEE
T ss_pred CCEEEEECCC--C-CCEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCC-EEEECCEEEEEECCCCCCCCE
T ss_conf 9679997698--9-97677375999859999999989998299999999579747882-899999999981643026760
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH----------------
Q ss_conf 8899704999995658999989823888510999997311489887766899999999999989----------------
Q 000746 719 LRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFNS---------------- 782 (1303)
Q Consensus 719 ireNI~~g~~~d~~~y~~vi~ac~L~~di~~lp~gd~T~ige~G~~LSGGQkqRiaLARAi~~~---------------- 782 (1303)
|+|||.+|..+++.+++.+++.|.+..++..+|+++++.++++|.+||||||||++||||++.+
T Consensus 113 v~eni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~ 192 (281)
T d1r0wa_ 113 IKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVF 192 (281)
T ss_dssp HHHHHTTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHH
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHH
T ss_conf 32142033345605799999997769999846123323555542377999999999999998696351333855448989
Q ss_pred ----H----HHHHCCCCEEEEEECCCCCCCCCCEEEEEECCEEEEECCHHHHHHCCHHHHHHHH
Q ss_conf ----9----8675099879999249994001497999939879994397889733459999999
Q 000746 783 ----C----IKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLME 838 (1303)
Q Consensus 783 ----~----i~~~l~~~TvilvTH~~~~l~~aD~ii~l~~G~i~~~G~~~~l~~~~~~~~~~~~ 838 (1303)
. +....+++|+|+|||+++.+..||+|++|++|+|+++|+++|++...+.|...+.
T Consensus 193 ~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~~~~~~~~~~ 256 (281)
T d1r0wa_ 193 TEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLM 256 (281)
T ss_dssp HHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCEEEEEECCEEEEECCHHHHHCCCCHHHHHHC
T ss_conf 9999999999886289999999252899985999999989999998789999605948999872
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.98 E-value=6.5e-32 Score=243.53 Aligned_cols=179 Identities=23% Similarity=0.335 Sum_probs=141.0
Q ss_pred CEEEEEEEEEECCCC-CCCCEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEE----------------C
Q ss_conf 289993389728999-85300565724996999994999986789999846999999966999----------------4
Q 000746 640 AVSIKNGNFSWDSKS-PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI----------------R 702 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~-~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llge~~~~~g~~~~~----------------~ 702 (1303)
.|+++|++++|+... .+|+|+||++++||+++|+||+|||||||+++|.|..+|.+|. +.+ +
T Consensus 3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~-I~~~g~~i~~~~~~~~~~~r 81 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE-LYFDDRLVASNGKLIVPPED 81 (242)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEE-EEETTEEEEETTEESSCGGG
T ss_pred EEEEEEEEEEECCCCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCEEEECCCHHHCCHHH
T ss_conf 89997579998899989980407898799899999899980999999997586888745-99999995137311153120
Q ss_pred CEEEEECCCCCCCC-CCHHHHHCCCCC---CCHH----HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 91799816865666-558899704999---9956----589999898238885109999973114898877668999999
Q 000746 703 GTVAYVPQISWIFN-ATLRKNILFGSE---FDPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVS 774 (1303)
Q Consensus 703 ~~iayv~Q~pwl~~-~TireNI~~g~~---~d~~----~y~~vi~ac~L~~di~~lp~gd~T~ige~G~~LSGGQkqRia 774 (1303)
.+++||+|+|-++. -|++|||.++.. .+++ +..++++.+.|.+. .......||||||||++
T Consensus 82 r~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~-----------~~~~p~~LSGGqkQRva 150 (242)
T d1oxxk2 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHV-----------LNHFPRELSGAQQQRVA 150 (242)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGG-----------TTSCGGGSCHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHH-----------HHCCHHHCCHHHHHHHH
T ss_conf 4514773043346666577776655676137999999999999866591766-----------64895459999985899
Q ss_pred HHHHHHH-----------------------HHHHHHC--CCCEEEEEECCCCCC-CCCCEEEEEECCEEEEECCHHHHHH
Q ss_conf 9999998-----------------------9986750--998799992499940-0149799993987999439788973
Q 000746 775 MARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 775 LARAi~~-----------------------~~i~~~l--~~~TvilvTH~~~~l-~~aD~ii~l~~G~i~~~G~~~~l~~ 828 (1303)
||||+.. +.+.+.. .+.|+|++||+++.+ ..||+|++|++|+|++.|+.+++..
T Consensus 151 iARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~ 230 (242)
T d1oxxk2 151 LARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230 (242)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 87577604661454478667998998899899999986359879999799999999699999998999999869999986
Q ss_pred CC
Q ss_conf 34
Q 000746 829 HG 830 (1303)
Q Consensus 829 ~~ 830 (1303)
++
T Consensus 231 ~P 232 (242)
T d1oxxk2 231 NP 232 (242)
T ss_dssp SC
T ss_pred CC
T ss_conf 89
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=99.98 E-value=1.5e-31 Score=240.89 Aligned_cols=178 Identities=23% Similarity=0.335 Sum_probs=140.6
Q ss_pred CEEEEEEEEEECCCCCCCCEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEE-----------------C
Q ss_conf 28999338972899985300565724996999994999986789999846999999966999-----------------4
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI-----------------R 702 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llge~~~~~g~~~~~-----------------~ 702 (1303)
.|+++|++++|++ ..+++|+||++++||+++|+||+|||||||+++|.|.++|.+|.. .+ +
T Consensus 3 ~i~v~nl~k~yg~-~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I-~~~g~~i~~~~~~~~~~~~~ 80 (240)
T d1g2912 3 GVRLVDVWKVFGE-VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI-YIGDKLVADPEKGIFVPPKD 80 (240)
T ss_dssp EEEEEEEEEEETT-EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEE-EETTEEEEEGGGTEECCGGG
T ss_pred CEEEEEEEEEECC-EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEE-EECCEEECCCCHHHHCCCCC
T ss_conf 1899869999899-999856066886998999999999809999999964878898989-99999803566444245322
Q ss_pred CEEEEECCCCCCCC-CCHHHHHCCCC---CCCHH----HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 91799816865666-55889970499---99956----589999898238885109999973114898877668999999
Q 000746 703 GTVAYVPQISWIFN-ATLRKNILFGS---EFDPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVS 774 (1303)
Q Consensus 703 ~~iayv~Q~pwl~~-~TireNI~~g~---~~d~~----~y~~vi~ac~L~~di~~lp~gd~T~ige~G~~LSGGQkqRia 774 (1303)
..++||+|+|-++. -|++||+.++. ..+.+ +..++++.+.+.+. .......||||||||++
T Consensus 81 r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~-----------~~~~p~~LSGGqkQRv~ 149 (240)
T d1g2912 81 RDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTEL-----------LNRKPRELSGGQRQRVA 149 (240)
T ss_dssp SSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGG-----------TTCCGGGSCHHHHHHHH
T ss_pred CCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHH-----------HCCCHHHCCHHHHHHHH
T ss_conf 5512002212223101166763306877299989999999999987599667-----------62993349999999999
Q ss_pred HHHHHHH-----------------------HHHHHHC--CCCEEEEEECCCCCCC-CCCEEEEEECCEEEEECCHHHHHH
Q ss_conf 9999998-----------------------9986750--9987999924999400-149799993987999439788973
Q 000746 775 MARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 775 LARAi~~-----------------------~~i~~~l--~~~TvilvTH~~~~l~-~aD~ii~l~~G~i~~~G~~~~l~~ 828 (1303)
||||+.. +.+.+.. .|.|+|++||+++.+. .||+|++|++|+|++.|+.+|+..
T Consensus 150 IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~~ 229 (240)
T d1g2912 150 LGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229 (240)
T ss_dssp HHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 99998269988982588765698999899999999986369889999599999999699999998999999859999982
Q ss_pred CC
Q ss_conf 34
Q 000746 829 HG 830 (1303)
Q Consensus 829 ~~ 830 (1303)
++
T Consensus 230 ~P 231 (240)
T d1g2912 230 KP 231 (240)
T ss_dssp SC
T ss_pred CC
T ss_conf 89
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=1.1e-31 Score=241.84 Aligned_cols=177 Identities=27% Similarity=0.377 Sum_probs=138.7
Q ss_pred EEEEEEEEEECCCCCCCCEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEC-----------CEEEEEC
Q ss_conf 89993389728999853005657249969999949999867899998469999999669994-----------9179981
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR-----------GTVAYVP 709 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llge~~~~~g~~~~~~-----------~~iayv~ 709 (1303)
|+++|++++|++ ..+|+|+||++++||+++|+||+|||||||+++|.|.++|.+| .+.++ ..|+||+
T Consensus 1 Iev~nv~k~yg~-~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG-~I~i~g~~i~~~~~~~r~ig~v~ 78 (232)
T d2awna2 1 VQLQNVTKAWGE-VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSG-DLFIGEKRMNDTPPAERGVGMVF 78 (232)
T ss_dssp EEEEEEEEEETT-EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEE-EEEESSSCCTTSCGGGTCEEEEC
T ss_pred CEEEEEEEEECC-EEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCC-EEEECCEECCCCCHHHCEEEEEC
T ss_conf 999999999899-9998111778869989999989998299999999658788888-89999997788864443222343
Q ss_pred CCCCCC-CCCHHHHHCCCCCC---CHH----HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 686566-65588997049999---956----5899998982388851099999731148988776689999999999998
Q 000746 710 QISWIF-NATLRKNILFGSEF---DPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN 781 (1303)
Q Consensus 710 Q~pwl~-~~TireNI~~g~~~---d~~----~y~~vi~ac~L~~di~~lp~gd~T~ige~G~~LSGGQkqRiaLARAi~~ 781 (1303)
|+|-++ +.|++||+.++... +++ +..++++...+.+. .......||||||||++||||+..
T Consensus 79 Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~-----------~~~~~~~LSGGqkQRvaiAraL~~ 147 (232)
T d2awna2 79 QSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHL-----------LDRKPKALSGGQRQRVAIGRTLVA 147 (232)
T ss_dssp SSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHH-----------HHCCHHHCCHHHHHHHHHHHHHHC
T ss_conf 342026433378897899987599889999999999975788656-----------648965699999999999999703
Q ss_pred -----------------------HHHHHHC--CCCEEEEEECCCCCCC-CCCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf -----------------------9986750--9987999924999400-14979999398799943978897334
Q 000746 782 -----------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSKHG 830 (1303)
Q Consensus 782 -----------------------~~i~~~l--~~~TvilvTH~~~~l~-~aD~ii~l~~G~i~~~G~~~~l~~~~ 830 (1303)
+.+.+.. .++|+|++||++.... .||+|++|++|+|++.|+.+++.+++
T Consensus 148 ~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P 222 (232)
T d2awna2 148 EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 222 (232)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHHCC
T ss_conf 998899758887889889989999999998742987999948999999969999999799999980899997389
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.97 E-value=4.2e-31 Score=237.63 Aligned_cols=178 Identities=25% Similarity=0.330 Sum_probs=141.3
Q ss_pred CEEEEEEEEEECCCCCCCCEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECC-----------EEEEE
Q ss_conf 2899933897289998530056572499699999499998678999984699999996699949-----------17998
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRG-----------TVAYV 708 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llge~~~~~g~~~~~~~-----------~iayv 708 (1303)
.|+++|++++|++ ..+|+|+||++++|++++|+||+|||||||++.|.|.++|.+| .+.+++ .|+||
T Consensus 6 ~I~v~nlsk~yg~-~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG-~I~i~g~~i~~~~~~~r~ig~v 83 (239)
T d1v43a3 6 EVKLENLTKRFGN-FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEG-RIYFGDRDVTYLPPKDRNISMV 83 (239)
T ss_dssp CEEEEEEEEEETT-EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEE-EEEETTEECTTSCGGGGTEEEE
T ss_pred EEEEEEEEEEECC-EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCC-EEEECCEECCCCCCCCCEEEEE
T ss_conf 4999879999999-9998130678879989999999998299999999758999878-7999164135477000158998
Q ss_pred CCCCCCC-CCCHHHHHCCCCC---CCHHHHHH----HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 1686566-6558899704999---99565899----99898238885109999973114898877668999999999999
Q 000746 709 PQISWIF-NATLRKNILFGSE---FDPAKYWK----TVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF 780 (1303)
Q Consensus 709 ~Q~pwl~-~~TireNI~~g~~---~d~~~y~~----vi~ac~L~~di~~lp~gd~T~ige~G~~LSGGQkqRiaLARAi~ 780 (1303)
+|+|-++ +.|++||+.++.. .+++..++ +++.+.|. .........||||||||++||||+.
T Consensus 84 ~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSGGq~QRvaiAraL~ 152 (239)
T d1v43a3 84 FQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIE-----------ELLNRYPAQLSGGQRQRVAVARAIV 152 (239)
T ss_dssp EC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCG-----------GGTTSCTTTCCSSCHHHHHHHHHHT
T ss_pred EECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCH-----------HHHCCCHHHCCHHHHHHHHHHHHHC
T ss_conf 00335342220999999999873999999999999999875985-----------5660995469999988999976640
Q ss_pred H-----------------------HHHHHHC--CCCEEEEEECCCCCC-CCCCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf 8-----------------------9986750--998799992499940-014979999398799943978897334
Q 000746 781 N-----------------------SCIKEEL--RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELSKHG 830 (1303)
Q Consensus 781 ~-----------------------~~i~~~l--~~~TvilvTH~~~~l-~~aD~ii~l~~G~i~~~G~~~~l~~~~ 830 (1303)
. +.+.+.. .++|+|++||++... ..||+|++|++|+|+++|+.+++.+++
T Consensus 153 ~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P 228 (239)
T d1v43a3 153 VEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP 228 (239)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 4998243068866689899989999999998731980799948999999869999999899999985999998689
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=99.97 E-value=7.9e-31 Score=235.66 Aligned_cols=176 Identities=27% Similarity=0.427 Sum_probs=140.0
Q ss_pred EEEEEEEEEECCCCCCCCEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECC-----------EEEEEC
Q ss_conf 899933897289998530056572499699999499998678999984699999996699949-----------179981
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRG-----------TVAYVP 709 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llge~~~~~g~~~~~~~-----------~iayv~ 709 (1303)
|+++|++++|+. .+|+|+||++++||+++|+||+|||||||+++|.|.++|.+| .+.+.| .++|++
T Consensus 2 i~v~nlsk~y~~--~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG-~I~~~G~~i~~~~~~~r~ig~v~ 78 (229)
T d3d31a2 2 IEIESLSRKWKN--FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSG-RILLDGKDVTDLSPEKHDIAFVY 78 (229)
T ss_dssp EEEEEEEEECSS--CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEE-EEEETTEECTTSCHHHHTCEEEC
T ss_pred EEEEEEEEEECC--EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCEECCCCCHHHHCCEEEC
T ss_conf 899989999499--788433789879989999989998299999999647688878-89995673465216574056151
Q ss_pred CCCCCCC-CCHHHHHCCCCC----CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH----
Q ss_conf 6865666-558899704999----9956589999898238885109999973114898877668999999999999----
Q 000746 710 QISWIFN-ATLRKNILFGSE----FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF---- 780 (1303)
Q Consensus 710 Q~pwl~~-~TireNI~~g~~----~d~~~y~~vi~ac~L~~di~~lp~gd~T~ige~G~~LSGGQkqRiaLARAi~---- 780 (1303)
|+|-++. .|++||+.++.. -++++..++++...+.+ ........||||||||++||||+.
T Consensus 79 Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSGG~~QRvaiAraL~~~P~ 147 (229)
T d3d31a2 79 QNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEH-----------LLDRNPLTLSGGEQQRVALARALVTNPK 147 (229)
T ss_dssp TTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTT-----------TTTSCGGGSCHHHHHHHHHHHHTTSCCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHH-----------HHHCCHHHCCHHHHCCHHHHHHHHCCCC
T ss_conf 21111746657788888776405538999999999825655-----------5758955479998401403043443677
Q ss_pred -------------------HHHHHHHC--CCCEEEEEECCCCCCC-CCCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf -------------------89986750--9987999924999400-14979999398799943978897334
Q 000746 781 -------------------NSCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSKHG 830 (1303)
Q Consensus 781 -------------------~~~i~~~l--~~~TvilvTH~~~~l~-~aD~ii~l~~G~i~~~G~~~~l~~~~ 830 (1303)
.+.+.+.. .+.|+|++||+++... .||+|++|++|++++.|+.+++.+++
T Consensus 148 iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P 219 (229)
T d3d31a2 148 ILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKP 219 (229)
T ss_dssp EEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSC
T ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 144347876799899999999999998647968999749999999969999999799999986999998689
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=1.4e-31 Score=241.12 Aligned_cols=177 Identities=23% Similarity=0.380 Sum_probs=137.7
Q ss_pred EEEEEEEEEECCCC---CCCCEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEC---------------
Q ss_conf 89993389728999---853005657249969999949999867899998469999999669994---------------
Q 000746 641 VSIKNGNFSWDSKS---PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR--------------- 702 (1303)
Q Consensus 641 i~~~~~~f~~~~~~---~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llge~~~~~g~~~~~~--------------- 702 (1303)
|+++|++++|+.+. .+|+|+||++++|++++|+||+|||||||++.|.|..+|.+| .+.++
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG-~I~~~g~~i~~~~~~~~~~~ 80 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG-SVLVDGQELTTLSESELTKA 80 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEE-EEEETTEEECTTCHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCC-CEEECCEEEEECCHHHHHHH
T ss_conf 79982799969998148986150578869979999899989888999987588636677-32886768520875551155
Q ss_pred -CEEEEECCCCCCCCC-CHHHHHCCCC---CCCH----HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf -917998168656665-5889970499---9995----658999989823888510999997311489887766899999
Q 000746 703 -GTVAYVPQISWIFNA-TLRKNILFGS---EFDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRV 773 (1303)
Q Consensus 703 -~~iayv~Q~pwl~~~-TireNI~~g~---~~d~----~~y~~vi~ac~L~~di~~lp~gd~T~ige~G~~LSGGQkqRi 773 (1303)
++++||+|+|-+++. |++|||.++. ..++ ++..+.++.++|.+ . .......||||||||+
T Consensus 81 rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~------~-----~~~~~~~LSGG~~QRv 149 (240)
T d3dhwc1 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGD------K-----HDSYPSNLSGGQKQRV 149 (240)
T ss_dssp HHHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTT------T-----TSSCBSCCCHHHHHHH
T ss_pred HCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCH------H-----HHCCHHHCCHHHHHHH
T ss_conf 4166430225222799649999999999849998999999999999769903------5-----5489434999999899
Q ss_pred HHHHHHHH-----------------------HHHHHHC--CCCEEEEEECCCCCCC-CCCEEEEEECCEEEEECCHHHHH
Q ss_conf 99999998-----------------------9986750--9987999924999400-14979999398799943978897
Q 000746 774 SMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELS 827 (1303)
Q Consensus 774 aLARAi~~-----------------------~~i~~~l--~~~TvilvTH~~~~l~-~aD~ii~l~~G~i~~~G~~~~l~ 827 (1303)
+||||+.. +.+.+.. .++|+|++||++..+. .||+|++|++|+|++.|+.+++.
T Consensus 150 aiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~ 229 (240)
T d3dhwc1 150 AIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVF 229 (240)
T ss_dssp HHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTT
T ss_pred HHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 98640105898687446556589888567999999998646978999838999999869999999799999987999997
Q ss_pred HC
Q ss_conf 33
Q 000746 828 KH 829 (1303)
Q Consensus 828 ~~ 829 (1303)
++
T Consensus 230 ~~ 231 (240)
T d3dhwc1 230 SH 231 (240)
T ss_dssp CS
T ss_pred HC
T ss_conf 28
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.97 E-value=1.1e-30 Score=234.53 Aligned_cols=175 Identities=26% Similarity=0.383 Sum_probs=131.7
Q ss_pred EEEEEEEEEECCCC---CCCCEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECC--------------
Q ss_conf 89993389728999---8530056572499699999499998678999984699999996699949--------------
Q 000746 641 VSIKNGNFSWDSKS---PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRG-------------- 703 (1303)
Q Consensus 641 i~~~~~~f~~~~~~---~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llge~~~~~g~~~~~~~-------------- 703 (1303)
|+++|++++|+... .+|+|+||++++||+++|+||+|||||||++.|.|..+|.+| .+.+.+
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG-~I~~~g~~i~~~~~~~~~~~ 80 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG-EVYIDNIKTNDLDDDELTKI 80 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEE-EEEETTEECTTCCHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCC-EEEECCEECCCCCHHHCCHH
T ss_conf 89990799948998208987133778849979999889999821655750688777766-26999998576885551231
Q ss_pred ---EEEEECCCCCCC-CCCHHHHHCCCCC------CCH-HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf ---179981686566-6558899704999------995-65899998982388851099999731148988776689999
Q 000746 704 ---TVAYVPQISWIF-NATLRKNILFGSE------FDP-AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQR 772 (1303)
Q Consensus 704 ---~iayv~Q~pwl~-~~TireNI~~g~~------~d~-~~y~~vi~ac~L~~di~~lp~gd~T~ige~G~~LSGGQkqR 772 (1303)
.|+||+|+|-++ +-|++||+.++.. .+. ++.+++.+... .-.+++. .....-.+||||||||
T Consensus 81 r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~L~~~---~~~~~p~~LSGGqkQR 153 (230)
T d1l2ta_ 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLK----MAELEER---FANHKPNQLSGGQQQR 153 (230)
T ss_dssp HHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHH----HTTCCGG---GTTCCGGGSCHHHHHH
T ss_pred HCCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----HHCHHHH---HHCCCHHHCCHHHHHH
T ss_conf 25557788041241768668887757888722478999999999999887----6242345---5348802389999999
Q ss_pred HHHHHHHHH-----------------------HHHHHHC--CCCEEEEEECCCCCCCCCCEEEEEECCEEEEECCH
Q ss_conf 999999998-----------------------9986750--99879999249994001497999939879994397
Q 000746 773 VSMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSF 823 (1303)
Q Consensus 773 iaLARAi~~-----------------------~~i~~~l--~~~TvilvTH~~~~l~~aD~ii~l~~G~i~~~G~~ 823 (1303)
++||||+.. +.+.+.. .++|+|+|||+++....||+|++|++|+|+++|+.
T Consensus 154 vaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 154 VAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCC
T ss_conf 9987565227888994687654698999999999999998439999998788899986998999989999995257
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=99.97 E-value=7.3e-30 Score=228.67 Aligned_cols=186 Identities=22% Similarity=0.380 Sum_probs=141.3
Q ss_pred CEEEEEEEEEECCCCCCCCEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEC-----------------
Q ss_conf 289993389728999853005657249969999949999867899998469999999669994-----------------
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR----------------- 702 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llge~~~~~g~~~~~~----------------- 702 (1303)
.++++|++++|+. ..+|+|+||++++||+++|+||+|||||||+++|.|.++|.+| .+.++
T Consensus 2 ~Lev~nl~k~yg~-~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G-~I~~~G~~i~~~~~~~~~~~~~ 79 (258)
T d1b0ua_ 2 KLHVIDLHKRYGG-HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEG-AIIVNGQNINLVRDKDGQLKVA 79 (258)
T ss_dssp CEEEEEEEEEETT-EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEE-EEEETTEECCEEECTTSSEEES
T ss_pred EEEEEEEEEEECC-EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-CEEECCEEECCCCCCCHHCCCC
T ss_conf 6999978999899-9988150668869979999989998299999999747667899-7799999933677520000235
Q ss_pred ---------CEEEEECCCCCCCC-CCHHHHHCCC----CCCCHH----HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf ---------91799816865666-5588997049----999956----58999989823888510999997311489887
Q 000746 703 ---------GTVAYVPQISWIFN-ATLRKNILFG----SEFDPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVN 764 (1303)
Q Consensus 703 ---------~~iayv~Q~pwl~~-~TireNI~~g----~~~d~~----~y~~vi~ac~L~~di~~lp~gd~T~ige~G~~ 764 (1303)
.+++||+|+|-+++ .|+.||+.++ ...++. +..+.++.+.+.+... ...-.+
T Consensus 80 ~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~p~~ 149 (258)
T d1b0ua_ 80 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQ----------GKYPVH 149 (258)
T ss_dssp CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHH----------TSCGGG
T ss_pred CHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHH----------CCCCCC
T ss_conf 1767999745448998332314110102136565787629998999999999999829952443----------068220
Q ss_pred CCHHHHHHHHHHHHHHH-----------------------HHHHHHC-CCCEEEEEECCCCCCC-CCCEEEEEECCEEEE
Q ss_conf 76689999999999998-----------------------9986750-9987999924999400-149799993987999
Q 000746 765 ISGGQKQRVSMARAVFN-----------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKE 819 (1303)
Q Consensus 765 LSGGQkqRiaLARAi~~-----------------------~~i~~~l-~~~TvilvTH~~~~l~-~aD~ii~l~~G~i~~ 819 (1303)
||||||||++||||+.. +.+.+.. +|+|+|+|||+++.+. .||+|++|++|+|++
T Consensus 150 LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv~ 229 (258)
T d1b0ua_ 150 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE 229 (258)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCEEEEEECCEEEE
T ss_conf 56778889899999843998788524555688788889987655410368833899489999998699999997999999
Q ss_pred ECCHHHHHHCC--HHHHHHH
Q ss_conf 43978897334--5999999
Q 000746 820 EGSFEELSKHG--RLFQKLM 837 (1303)
Q Consensus 820 ~G~~~~l~~~~--~~~~~~~ 837 (1303)
.|+.+|+..++ ...++++
T Consensus 230 ~g~~~ev~~~P~~~~~~~ll 249 (258)
T d1b0ua_ 230 EGDPEQVFGNPQSPRLQQFL 249 (258)
T ss_dssp EECHHHHHHSCCSHHHHHHH
T ss_pred ECCHHHHHHCCCCHHHHHHH
T ss_conf 84999998389999999988
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.97 E-value=3.9e-29 Score=223.45 Aligned_cols=182 Identities=21% Similarity=0.284 Sum_probs=136.1
Q ss_pred CEEEEEEEEEECCCCCCCCEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECC--------------EE
Q ss_conf 2899933897289998530056572499699999499998678999984699999996699949--------------17
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRG--------------TV 705 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llge~~~~~g~~~~~~~--------------~i 705 (1303)
.++++|++.+|+. ..+|+|+||++++||+++++||+|||||||+++|.|.++|.+| .+.+++ .|
T Consensus 4 iL~v~nlsk~yg~-~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G-~I~~~g~~i~~~~~~~~~~~gi 81 (254)
T d1g6ha_ 4 ILRTENIVKYFGE-FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEG-RVYFENKDITNKEPAELYHYGI 81 (254)
T ss_dssp EEEEEEEEEEETT-EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEE-EEEETTEECTTCCHHHHHHHTE
T ss_pred EEEEEEEEEEECC-EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCEECCCHHHHHHHHHCC
T ss_conf 6999778999799-6887121799889979999999998499999999779768873-7999999664056999998338
Q ss_pred EEECCCCCCC-CCCHHHHHCCCCCCC--------------HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 9981686566-655889970499999--------------5658999989823888510999997311489887766899
Q 000746 706 AYVPQISWIF-NATLRKNILFGSEFD--------------PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQK 770 (1303)
Q Consensus 706 ayv~Q~pwl~-~~TireNI~~g~~~d--------------~~~y~~vi~ac~L~~di~~lp~gd~T~ige~G~~LSGGQk 770 (1303)
+|++|+|-++ +.|+.||+.++.... .++-...-++..+.+.+. ..........+||||||
T Consensus 82 ~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----l~~~~~~~~~~LSgG~~ 156 (254)
T d1g6ha_ 82 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK-----LSHLYDRKAGELSGGQM 156 (254)
T ss_dssp EECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTT-----CGGGTTSBGGGSCHHHH
T ss_pred CCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCC-----CCHHCCCCHHHCCCHHH
T ss_conf 7257764247887423214301333034504566542135328999999999987619-----63020595356991888
Q ss_pred HHHHHHHHHHH-----------------------HHHHHH-CCCCEEEEEECCCCCC-CCCCEEEEEECCEEEEECCHHH
Q ss_conf 99999999998-----------------------998675-0998799992499940-0149799993987999439788
Q 000746 771 QRVSMARAVFN-----------------------SCIKEE-LRGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEE 825 (1303)
Q Consensus 771 qRiaLARAi~~-----------------------~~i~~~-l~~~TvilvTH~~~~l-~~aD~ii~l~~G~i~~~G~~~~ 825 (1303)
||++||||+.. +.+.+. -+|+|++++||+++.+ ..||+|++|++|+|+.+|+.+|
T Consensus 157 Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~~~e 236 (254)
T d1g6ha_ 157 KLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 236 (254)
T ss_dssp HHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHH
T ss_pred HHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHH
T ss_conf 89999999975927232439765699999999999999999789989999476999998699999996998999966899
Q ss_pred HHH
Q ss_conf 973
Q 000746 826 LSK 828 (1303)
Q Consensus 826 l~~ 828 (1303)
+.+
T Consensus 237 ~~~ 239 (254)
T d1g6ha_ 237 EIK 239 (254)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 865
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=99.97 E-value=1.6e-29 Score=226.29 Aligned_cols=184 Identities=24% Similarity=0.386 Sum_probs=139.3
Q ss_pred CCEEEEEEEEEECCCCCCCCEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECC--------------E
Q ss_conf 92899933897289998530056572499699999499998678999984699999996699949--------------1
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRG--------------T 704 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llge~~~~~g~~~~~~~--------------~ 704 (1303)
..++++|++++|+. ..+|+|+||++++||+++++||||||||||+++|.|.++|.+| .+.++| .
T Consensus 5 ~~Lev~~l~k~yg~-~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G-~I~~~G~~i~~~~~~~~~r~g 82 (240)
T d1ji0a_ 5 IVLEVQSLHVYYGA-IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKG-KIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEEETT-EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEE-EEEETTEECTTCCHHHHHHTT
T ss_pred EEEEEEEEEEEECC-EEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCCCCCCCCHHHHHHHC
T ss_conf 07999618999899-8888302578889979999999998599999999678888803-898424434466088888742
Q ss_pred EEEECCCCCCCC-CCHHHHHCCCCC--CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 799816865666-558899704999--99565899998982388851099999731148988776689999999999998
Q 000746 705 VAYVPQISWIFN-ATLRKNILFGSE--FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN 781 (1303)
Q Consensus 705 iayv~Q~pwl~~-~TireNI~~g~~--~d~~~y~~vi~ac~L~~di~~lp~gd~T~ige~G~~LSGGQkqRiaLARAi~~ 781 (1303)
++|++|++-+|+ -|++||+.++.. .+.+...+.++.. ...+..+.+. ......+||||||||++||||+..
T Consensus 83 i~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~----~~~~~~~LSGG~~Qrv~iAraL~~ 156 (240)
T d1ji0a_ 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWI--FSLFPRLKER----LKQLGGTLSGGEQQMLAIGRALMS 156 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHH--HHHCHHHHTT----TTSBSSSSCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHH--HHHHHCHHHH----HHCCHHHCCHHHHHHHHHHHHHHH
T ss_conf 3556765545776369999998887327888999999999--9874176888----758543389999999999999982
Q ss_pred -----------------------HHHHHH-CCCCEEEEEECCCCCC-CCCCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf -----------------------998675-0998799992499940-014979999398799943978897334
Q 000746 782 -----------------------SCIKEE-LRGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELSKHG 830 (1303)
Q Consensus 782 -----------------------~~i~~~-l~~~TvilvTH~~~~l-~~aD~ii~l~~G~i~~~G~~~~l~~~~ 830 (1303)
+.+.+. -+|+|++++||++..+ ..||+|++|++|++++.|+++|+.+++
T Consensus 157 ~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~ 230 (240)
T d1ji0a_ 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNE 230 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTCH
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCCH
T ss_conf 99874003988679999999999999999968998999958899999969999999899999984899984298
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=99.96 E-value=5.4e-29 Score=222.37 Aligned_cols=180 Identities=22% Similarity=0.318 Sum_probs=138.3
Q ss_pred CEEEEEEEEEECCCCCCCCEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEC------------CEEEE
Q ss_conf 289993389728999853005657249969999949999867899998469999999669994------------91799
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR------------GTVAY 707 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llge~~~~~g~~~~~~------------~~iay 707 (1303)
+|+++|++.+|+. .++|+|+||++++|++++|+||+|||||||+++|.|.++|.+| .+.+. ..++|
T Consensus 2 aI~v~nl~k~yg~-~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G-~i~i~G~~i~~~~~~~~~~i~~ 79 (238)
T d1vpla_ 2 AVVVKDLRKRIGK-KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG-IVTVFGKNVVEEPHEVRKLISY 79 (238)
T ss_dssp CEEEEEEEEEETT-EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEE-EEEETTEETTTCHHHHHTTEEE
T ss_pred CEEEEEEEEEECC-EEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCEECCCCHHHHHHHEEE
T ss_conf 7899958999999-9998062568848979999999999999999999669887888-7999867244683988721867
Q ss_pred ECCCCCCC-CCCHHHHHCCCCC---CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH---
Q ss_conf 81686566-6558899704999---9956589999898238885109999973114898877668999999999999---
Q 000746 708 VPQISWIF-NATLRKNILFGSE---FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF--- 780 (1303)
Q Consensus 708 v~Q~pwl~-~~TireNI~~g~~---~d~~~y~~vi~ac~L~~di~~lp~gd~T~ige~G~~LSGGQkqRiaLARAi~--- 780 (1303)
|||++.++ +-|++||+.+... .++++.++.++.. .+.+ +.......+-.+||||||||++||||+.
T Consensus 80 vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~--l~~~-----~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p 152 (238)
T d1vpla_ 80 LPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERA--TEIA-----GLGEKIKDRVSTYSKGMVRKLLIARALMVNP 152 (238)
T ss_dssp ECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHH--HHHH-----CCGGGGGSBGGGCCHHHHHHHHHHHHHTTCC
T ss_pred EEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH--HHHC-----CCHHHHHHHHHHCCHHHHHHHHHHHHHHCCC
T ss_conf 50015468786677888989986179989999999999--9867-----9788885045337998989999999986599
Q ss_pred --------------------HHHHHHHC-CCCEEEEEECCCCCCC-CCCEEEEEECCEEEEECCHHHHHH
Q ss_conf --------------------89986750-9987999924999400-149799993987999439788973
Q 000746 781 --------------------NSCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 781 --------------------~~~i~~~l-~~~TvilvTH~~~~l~-~aD~ii~l~~G~i~~~G~~~~l~~ 828 (1303)
.+.+.... .|+|++++||+++.+. .||+|++|++|+++..|+++++.+
T Consensus 153 ~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~ 222 (238)
T d1vpla_ 153 RLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 222 (238)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 9887337988979899999999999999659989999598999999699999998999999928999986
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.96 E-value=3e-24 Score=188.07 Aligned_cols=315 Identities=11% Similarity=0.088 Sum_probs=157.1
Q ss_pred HHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 46799999980843-79999999999999998624487743002466788892--3889999999999999999999999
Q 000746 906 GSVLTRYKNALGGP-WVIMILFACYLSTEVLRISSSTWLSFWTDQSTSKNYNP--GFYIAIYTILAFGQVTVTLLNSYWL 982 (1303)
Q Consensus 906 ~~~y~~Y~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~--~~~l~iy~~l~~~~~~~~~~~~~~~ 982 (1303)
|++++++++..... +.+.+.+++.++..+.....++.++...|+........ ..+.+++.++.++..++.++..+..
T Consensus 1 Wk~~krl~~~~~~~k~~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~ 80 (319)
T d3b60a2 1 WQTFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYCI 80 (319)
T ss_dssp CHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 96899999999999999999999999999999999999999999874468778999999999999997645335466544
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999877396434334781025787513377877878999999999999999999999999989999
Q 000746 983 IISSLRAAKRLHDSMLNSILRAPMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLW 1062 (1303)
Q Consensus 983 ~~~~~~~s~~Lh~~l~~~il~~p~~fFd~~~~G~ilnRfs~D~~~id~~l~~~~~~~~~~~~~~i~~~v~i~~~~~~~~~ 1062 (1303)
...+.+...++++++++++++.|++||+++++|++++|+++|++.++..+.......+...+.+++.++.+...+|..++
T Consensus 81 ~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l 160 (319)
T d3b60a2 81 SWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSI 160 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHH
T ss_pred HHHHHCCCCCHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 34310001100047777650101111023332211111212121000011111200112334456688888765200210
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999877999977500234289889997628065750471789999999988866589999999879
Q 000746 1063 AIMPLLILFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNR 1142 (1303)
Q Consensus 1063 ~~~pl~~~~~~i~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~ 1142 (1303)
.++...++...+..++.+..++..+...+..+...+.+.|.++|+++||+|++|+.+.+++.+..++..+........+.
T Consensus 161 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (319)
T d3b60a2 161 ILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASS 240 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 25668999999887666687787898876445677887776248723531110102456666653135677888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999999999999999987067444434305699999999999999999999999999664349999997106999
Q 000746 1143 WLTIRLETLGGIMIWLIATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPS 1222 (1303)
Q Consensus 1143 wl~~~l~ll~~~~~~~~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~v~~~~~le~~~~sveRi~~~~~~~~ 1222 (1303)
+......++..+....+..++.... ..+....|.+..++.+...+..++..+...+.+++++.+|.+|+.|++|.|+
T Consensus 241 ~~~~~~~~~~~~~~~~~l~~g~~~~---~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~~ 317 (319)
T d3b60a2 241 ISDPIIQLIASLALAFVLYAASFPS---VMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQ 317 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSS---TTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 4064010000002379999999999---8099789999999999999999999999999999999999999999966998
Q ss_pred C
Q ss_conf 9
Q 000746 1223 E 1223 (1303)
Q Consensus 1223 E 1223 (1303)
|
T Consensus 318 E 318 (319)
T d3b60a2 318 E 318 (319)
T ss_dssp S
T ss_pred C
T ss_conf 9
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.95 E-value=8.2e-28 Score=213.88 Aligned_cols=173 Identities=21% Similarity=0.338 Sum_probs=126.3
Q ss_pred EEEEEECCCCCCCCEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEC-----------CEEEEECCCCC
Q ss_conf 3389728999853005657249969999949999867899998469999999669994-----------91799816865
Q 000746 645 NGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR-----------GTVAYVPQISW 713 (1303)
Q Consensus 645 ~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llge~~~~~g~~~~~~-----------~~iayv~Q~pw 713 (1303)
++.-.+++ ..+ |+||+++ +++++|+||+|||||||++.|.|.++|.+| .+.++ ..|+||+|+|-
T Consensus 6 ~~~k~~g~--~~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G-~I~~~G~~i~~~~~~~r~ig~v~Q~~~ 80 (240)
T d2onka1 6 RAEKRLGN--FRL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRG-EVRLNGADITPLPPERRGIGFVPQDYA 80 (240)
T ss_dssp EEEEEETT--EEE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEE-EEEETTEECTTSCTTTSCCBCCCSSCC
T ss_pred EEEEEECC--EEE-EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCE-EEEECCEECCCCCHHHCCCEEECCCHH
T ss_conf 99999899--999-9999749-979999979998099999999739998962-899999998869989928522523144
Q ss_pred CCC-CCHHHHHCCCCC-CCHHHHHH-HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH---------
Q ss_conf 666-558899704999-99565899-998982388851099999731148988776689999999999998---------
Q 000746 714 IFN-ATLRKNILFGSE-FDPAKYWK-TVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN--------- 781 (1303)
Q Consensus 714 l~~-~TireNI~~g~~-~d~~~y~~-vi~ac~L~~di~~lp~gd~T~ige~G~~LSGGQkqRiaLARAi~~--------- 781 (1303)
++. -|++|||.|+.. .++...++ +-+. ++.+ |...........||||||||++||||+..
T Consensus 81 l~~~ltV~enl~~~l~~~~~~~~~~~v~~~------l~~~--gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDE 152 (240)
T d2onka1 81 LFPHLSVYRNIAYGLRNVERVERDRRVREM------AEKL--GIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDE 152 (240)
T ss_dssp CCTTSCHHHHHHTTCTTSCHHHHHHHHHHH------HHTT--TCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEES
T ss_pred HCCCCHHHHHHHHHHCCCCHHHHHHHHHHH------HHHC--CCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCCEEECC
T ss_conf 352201557666532336778899999999------9863--83756657944489999899999877751677067528
Q ss_pred --------------HHHHHHC--CCCEEEEEECCCCCCC-CCCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf --------------9986750--9987999924999400-14979999398799943978897334
Q 000746 782 --------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSKHG 830 (1303)
Q Consensus 782 --------------~~i~~~l--~~~TvilvTH~~~~l~-~aD~ii~l~~G~i~~~G~~~~l~~~~ 830 (1303)
+.+.+.. .+.|+|++||++..+. .||+|++|++|+++++|+.+|+.+..
T Consensus 153 Pts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~ 218 (240)
T d2onka1 153 PLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK 218 (240)
T ss_dssp TTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHCCC
T ss_conf 655588799999999999998743976999818999999969999999899999990699983299
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.95 E-value=4.9e-22 Score=172.10 Aligned_cols=305 Identities=15% Similarity=0.091 Sum_probs=228.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998689999999999999999999999999999840699634899999999999999999999999999999999999
Q 000746 321 LNNSFGGRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPAWIGYIYAFLIFVGVSFGVLTEAQYFQNVWRVGFRLRS 400 (1303)
Q Consensus 321 l~~~~~~~~~~~~~~~l~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~r~~~~ir~ 400 (1303)
..+.+++.++...++.++..++....|++++.++|....+......+.+++.+.+..++..++.....+...+.+.++..
T Consensus 10 ~~~~~k~~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 89 (319)
T d3b60a2 10 TIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYCISWVSGKVVM 89 (319)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999999999999999999999999999874468778999999999999997645335466544343100011
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999749911016999689999999999999999999-999998999999999999999979999999999999
Q 000746 401 TLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQ-LHGLWSAPFRITLSMVLLYQQLGVASLLGSLMLVLM 479 (1303)
Q Consensus 401 ~l~~~i~~k~l~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~-~~~~~~~pl~i~~~~~ll~~~lg~~~l~~~~v~~i~ 479 (1303)
.++..+|+|.++.+....++.++|++.++++.|++.+.+.... ........+.++.++..++..-...+++.++.+++.
T Consensus 90 ~l~~~~~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~li~l~~~~~~ 169 (319)
T d3b60a2 90 TMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIV 169 (319)
T ss_dssp HHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 00047777650101111023332211111212121000011111200112334456688888765200210256689999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999964899998224899999999999999999999999999999999889
Q 000746 480 VPLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSI 559 (1303)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~r~~E~~~~~~~~~~~~~~~~~~~~~ 559 (1303)
..+.....++..+.+++..+..++..+...|.++|+++||.+++|+.+.+++++..++..+...+...............
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (319)
T d3b60a2 170 SIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLI 249 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 99887666687787898876445677887776248723531110102456666653135677888887777406401000
Q ss_pred HHH--HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 688--677653565460798898899999999999999999999999999999999999999999886
Q 000746 560 PVV--VTVVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEE 625 (1303)
Q Consensus 560 ~~~--~~~~~f~~~~~~~~~l~~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~~~~s~~Ri~~fL~~~~ 625 (1303)
..+ +.++.+|.+....|.++.+..++.+.+...+..|+..++..+..+.++.+|.+|+.++++.|+
T Consensus 250 ~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~~ 317 (319)
T d3b60a2 250 ASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQ 317 (319)
T ss_dssp HHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 00023799999999998099789999999999999999999999999999999999999999966998
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.94 E-value=1.1e-23 Score=183.94 Aligned_cols=304 Identities=13% Similarity=0.158 Sum_probs=195.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH--HH---HHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998689999999999999999999999999999840699634--89---999--999999999999999999999999
Q 000746 321 LNNSFGGRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPAW--IG---YIY--AFLIFVGVSFGVLTEAQYFQNVWR 393 (1303)
Q Consensus 321 l~~~~~~~~~~~~~~~l~~~~~~~~~p~ll~~li~~~~~~~~~~--~~---~~~--a~~l~~~~~~~~~~~~~~~~~~~r 393 (1303)
..|.+++.+....++.++..++....|++++.++|.+..+.... .. ... ++.+.+..++..+......+...+
T Consensus 8 ~~k~~k~~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (323)
T d2hyda2 8 FVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQW 87 (323)
T ss_dssp HHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999986267742155689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999749911016999689999999999999999999-99999899999999999999997999999
Q 000746 394 VGFRLRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQ-LHGLWSAPFRITLSMVLLYQQLGVASLLG 472 (1303)
Q Consensus 394 ~~~~ir~~l~~~i~~k~l~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~-~~~~~~~pl~i~~~~~ll~~~lg~~~l~~ 472 (1303)
.+.+++..++..+|+|.++++....++.++|++.+++++|++.+.+.... +...+...+.+++++..++..-...+++.
T Consensus 88 ~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~ 167 (323)
T d2hyda2 88 TSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAA 167 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99855677888876654023321000122211000111133210011134542011146653346544000014688899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999996489999822489999999999999999999999999999
Q 000746 473 SLMLVLMVPLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFN 552 (1303)
Q Consensus 473 ~~v~~i~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~r~~E~~~~~~~~~~~~~~ 552 (1303)
+++..+...+.....++..+..++..+..++..+.+.|.++|+++||.+++|+.+.+++.+..++..+...+........
T Consensus 168 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 247 (323)
T d2hyda2 168 LFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYS 247 (323)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHC
T ss_conf 99887777777641233320267789899999978788755970234676411100233022311110156776520000
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998896886--7765356546079889889999999999999999999999999999999999999999988
Q 000746 553 SFILNSIPVVV--TVVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAE 624 (1303)
Q Consensus 553 ~~~~~~~~~~~--~~~~f~~~~~~~~~l~~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~~~~s~~Ri~~fL~~~ 624 (1303)
.........+. .++.++.+...+|.++++..++.+.++..+..|+..+...+..+.++.+|.+||.++++.|
T Consensus 248 ~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd~e 321 (323)
T d2hyda2 248 FAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDED 321 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 11111012055899999999999849988999999999999999999999999999999999999999997799
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.94 E-value=5.5e-22 Score=171.73 Aligned_cols=301 Identities=13% Similarity=0.148 Sum_probs=222.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CC---HHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 799999999999999986244877430024667888-92---3889-----99999999999999999999999999999
Q 000746 920 WVIMILFACYLSTEVLRISSSTWLSFWTDQSTSKNY-NP---GFYI-----AIYTILAFGQVTVTLLNSYWLIISSLRAA 990 (1303)
Q Consensus 920 ~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~-~~---~~~l-----~iy~~l~~~~~~~~~~~~~~~~~~~~~~s 990 (1303)
+.+...+++.++........++.++...|....... .. .... ..+.++.+...++.+...+.....+.+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 93 (323)
T d2hyda2 14 YRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQWTSNKIL 93 (323)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999986267742155689999999999999999999999999999999998556
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999987739643433478102578751337787787899999999999999999999999998999999999999
Q 000746 991 KRLHDSMLNSILRAPMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLIL 1070 (1303)
Q Consensus 991 ~~Lh~~l~~~il~~p~~fFd~~~~G~ilnRfs~D~~~id~~l~~~~~~~~~~~~~~i~~~v~i~~~~~~~~~~~~pl~~~ 1070 (1303)
.++|+++++++++.|++||+++++|++++|+++|++.+++.....+...+..++.++..++.+...+|.+.++.++..++
T Consensus 94 ~~lr~~l~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~~ 173 (323)
T d2hyda2 94 YDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPF 173 (323)
T ss_dssp HHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTTTHHHHTTHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 77888876654023321000122211000111133210011134542011146653346544000014688899998877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999987799997750023428988999762806575047178999999998886658999999987999999999
Q 000746 1071 FYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLET 1150 (1303)
Q Consensus 1071 ~~~i~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~l 1150 (1303)
...+..++.+..++..+...+..+...+++.|+++|+++||+|++|+.+.+++.+..++..+........+.+......+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~ 253 (323)
T d2hyda2 174 YILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINT 253 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCC
T ss_conf 77777641233320267789899999978788755970234676411100233022311110156776520000111110
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9999999999999870674444343056999999999999999999999999996643499999971069999
Q 000746 1151 LGGIMIWLIATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSE 1223 (1303)
Q Consensus 1151 l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~v~~~~~le~~~~sveRi~~~~~~~~E 1223 (1303)
+..+.......++..... .+....|.+...+.+...+..++..+...+.+++.+..|.+|+.|++|+|+|
T Consensus 254 ~~~~~~~~~l~~~~~~~~---~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd~e~e 323 (323)
T d2hyda2 254 VTDIGPIIVIGVGAYLAI---SGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYD 323 (323)
T ss_dssp HHHHHHHHHHHHHHHHHH---HTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCS
T ss_pred CCHHHHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 120558999999999998---4998899999999999999999999999999999999999999999779998
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=6.4e-25 Score=192.93 Aligned_cols=173 Identities=23% Similarity=0.347 Sum_probs=133.3
Q ss_pred CEEEEEEEEEECCCCCCCCEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECC-------------EEE
Q ss_conf 2899933897289998530056572499699999499998678999984699999996699949-------------179
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRG-------------TVA 706 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llge~~~~~g~~~~~~~-------------~ia 706 (1303)
.++++|++.+ ..|+||||+|++||+++|+||+|||||||+++|.|.. +.+| .+.+.+ ..+
T Consensus 3 il~~~dv~~~-----~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G-~I~~~g~~i~~~~~~~~~~~~~ 75 (231)
T d1l7vc_ 3 VMQLQDVAES-----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKG-SIQFAGQPLEAWSATKLALHRA 75 (231)
T ss_dssp EEEEEEECCT-----TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSS-EEEESSSBGGGSCHHHHHHHEE
T ss_pred EEEEECCCCC-----CEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCE-EEEECCEECCCCCHHHHHHHCE
T ss_conf 9999874157-----1555888899489899999899980999999994887-9955-9999999998699899986402
Q ss_pred EECCCCCC-CCCCHHHHHCCCCC--CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH--
Q ss_conf 98168656-66558899704999--99565899998982388851099999731148988776689999999999998--
Q 000746 707 YVPQISWI-FNATLRKNILFGSE--FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN-- 781 (1303)
Q Consensus 707 yv~Q~pwl-~~~TireNI~~g~~--~d~~~y~~vi~ac~L~~di~~lp~gd~T~ige~G~~LSGGQkqRiaLARAi~~-- 781 (1303)
|++|+... +..++.+|+.++.. ...++..++++.+.+.+ .++.+..+||||||||++||||+.+
T Consensus 76 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----------~~~~~~~~LSgG~~Qrv~iA~al~~~~ 144 (231)
T d1l7vc_ 76 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDD-----------KLGRSTNQLSGGEWQRVRLAAVVLQIT 144 (231)
T ss_dssp EECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTT-----------TTTSBGGGCCHHHHHHHHHHHHHHHHC
T ss_pred EEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCHH-----------HHCCCHHHCCHHHHHHHHHHHHHHHHC
T ss_conf 451213577442098876410014668999999998659876-----------767684456998899999999998517
Q ss_pred -------HH---------------------HHHH-CCCCEEEEEECCCCC-CCCCCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf -------99---------------------8675-099879999249994-0014979999398799943978897334
Q 000746 782 -------SC---------------------IKEE-LRGKTRILVTNQLHF-LPHVDRIILVSEGMIKEEGSFEELSKHG 830 (1303)
Q Consensus 782 -------~~---------------------i~~~-l~~~TvilvTH~~~~-l~~aD~ii~l~~G~i~~~G~~~~l~~~~ 830 (1303)
+. +.+. ..|+|+|++||+++. ...||+|++|++|++++.|+.+|+..++
T Consensus 145 p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~~ 223 (231)
T d1l7vc_ 145 PQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPP 223 (231)
T ss_dssp TTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCHH
T ss_pred CCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCCH
T ss_conf 1338998899971877778989999999999999867999999967799999979999999799899988999981886
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.90 E-value=2.7e-23 Score=181.20 Aligned_cols=157 Identities=22% Similarity=0.373 Sum_probs=112.8
Q ss_pred CEEEEEEEEEECCCCCCCCEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEC--------CEEEEECCC
Q ss_conf 289993389728999853005657249969999949999867899998469999999669994--------917998168
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR--------GTVAYVPQI 711 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llge~~~~~g~~~~~~--------~~iayv~Q~ 711 (1303)
.++++|++++|+ .++|+|+||++++|++++|+||||||||||+++|.|.++|.+| .+.++ +.++|++|+
T Consensus 2 ~lev~~ls~~y~--~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G-~I~~~g~~i~~~~~~i~~~~~~ 78 (200)
T d1sgwa_ 2 KLEIRDLSVGYD--KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKG-EIIYNGVPITKVKGKIFFLPEE 78 (200)
T ss_dssp EEEEEEEEEESS--SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEE-EEEETTEEGGGGGGGEEEECSS
T ss_pred EEEEEEEEEEEC--CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCC-EEEECCEEHHHHCCCEEEEEEC
T ss_conf 599998999939--9288420889859989999999997199999999662056778-8999989626736708999501
Q ss_pred CCCCC-CCHHHHHCC-----CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-----
Q ss_conf 65666-558899704-----9999956589999898238885109999973114898877668999999999999-----
Q 000746 712 SWIFN-ATLRKNILF-----GSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF----- 780 (1303)
Q Consensus 712 pwl~~-~TireNI~~-----g~~~d~~~y~~vi~ac~L~~di~~lp~gd~T~ige~G~~LSGGQkqRiaLARAi~----- 780 (1303)
+.++. -|++||+.+ +.+.++++..+.++. ++.++ +.++-.+||||||||+++|||+.
T Consensus 79 ~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~------~~~~~------~~~~~~~LSgG~~qrv~ia~al~~~~~l 146 (200)
T d1sgwa_ 79 IIVPRKISVEDYLKAVASLYGVKVNKNEIMDALES------VEVLD------LKKKLGELSQGTIRRVQLASTLLVNAEI 146 (200)
T ss_dssp CCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHH------TTCCC------TTSBGGGSCHHHHHHHHHHHHTTSCCSE
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHH------CCCCC------CCCCCCCCCCCHHHHHHHHHHHHCCCCE
T ss_conf 35788828999999999754886379999999987------48856------3012686897188889999988649989
Q ss_pred ------------------HHHHHHHCCCC-EEEEEECCCCCCCCCCEEEEEE
Q ss_conf ------------------89986750998-7999924999400149799993
Q 000746 781 ------------------NSCIKEELRGK-TRILVTNQLHFLPHVDRIILVS 813 (1303)
Q Consensus 781 ------------------~~~i~~~l~~~-TvilvTH~~~~l~~aD~ii~l~ 813 (1303)
.+.+.+..+++ ++|+.+|+ .+..||.+.+|.
T Consensus 147 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~--~l~~~D~~~~l~ 196 (200)
T d1sgwa_ 147 YVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE--ELSYCDVNENLH 196 (200)
T ss_dssp EEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESS--CCTTSSEEEEGG
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEC--HHHHCCHHHHEE
T ss_conf 99868620169999999999999998679999999916--254416123401
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.72 E-value=5.5e-18 Score=142.80 Aligned_cols=65 Identities=26% Similarity=0.582 Sum_probs=61.7
Q ss_pred CCCCEEEEEEEEEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEE
Q ss_conf 99640999977998379999953353066669978999879998988999999402269997162
Q 000746 1238 PSSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1238 p~~G~Ief~nVsf~Y~~~~~~VLk~Isl~I~pGekVaIVGrTGSGKSTLi~lL~Rl~e~~~G~I~ 1302 (1303)
..+|+|+|+||+|+|+++.++||+||||+|++||++||||+||||||||+++|.|+++|++|+|.
T Consensus 12 ~~~g~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~ 76 (255)
T d2hyda1 12 IKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQIL 76 (255)
T ss_dssp CCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEE
T ss_pred CCCCEEEEEEEEEEECCCCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCC
T ss_conf 77887999988999599997606443899839989999889998099999999712786300015
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=99.71 E-value=6.1e-18 Score=142.49 Aligned_cols=61 Identities=33% Similarity=0.720 Sum_probs=58.7
Q ss_pred EEEEEEEEEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEE
Q ss_conf 0999977998379999953353066669978999879998988999999402269997162
Q 000746 1242 SIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1242 ~Ief~nVsf~Y~~~~~~VLk~Isl~I~pGekVaIVGrTGSGKSTLi~lL~Rl~e~~~G~I~ 1302 (1303)
+|+|+||+|+|+++.++||+||||+|++||++||||+||||||||+++|.|+++|++|+|.
T Consensus 1 eI~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~ 61 (241)
T d2pmka1 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61 (241)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred CEEEEEEEEEECCCCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEE
T ss_conf 9299999999089996037424899849999999999999899999999735788888999
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.70 E-value=1.8e-17 Score=139.10 Aligned_cols=64 Identities=25% Similarity=0.623 Sum_probs=60.6
Q ss_pred CCCEEEEEEEEEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEE
Q ss_conf 9640999977998379999953353066669978999879998988999999402269997162
Q 000746 1239 SSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1239 ~~G~Ief~nVsf~Y~~~~~~VLk~Isl~I~pGekVaIVGrTGSGKSTLi~lL~Rl~e~~~G~I~ 1302 (1303)
..|+|+|+||+|+|+.+..++|+||||+|++||++||||+||||||||+++|.|+++|++|+|.
T Consensus 10 ~~g~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~ 73 (253)
T d3b60a1 10 ATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL 73 (253)
T ss_dssp CCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEE
T ss_pred CCEEEEEEEEEEEECCCCCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE
T ss_conf 8307999988999299997635332899859999999999998599999998621688846898
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=1.9e-17 Score=138.86 Aligned_cols=66 Identities=32% Similarity=0.533 Sum_probs=59.9
Q ss_pred CCCCCEEEEEEEEEEECCC-CCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEE
Q ss_conf 9996409999779983799-99953353066669978999879998988999999402269997162
Q 000746 1237 WPSSGSIKFEDVVLRYRPE-LPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1237 wp~~G~Ief~nVsf~Y~~~-~~~VLk~Isl~I~pGekVaIVGrTGSGKSTLi~lL~Rl~e~~~G~I~ 1302 (1303)
++.+|.|+|+||+|+|+.. ..++|+||||+|++||++||||+||||||||+++|.|+++|++|+|+
T Consensus 6 ~~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~ 72 (251)
T d1jj7a_ 6 LHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLL 72 (251)
T ss_dssp SCCCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred CCCCCEEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
T ss_conf 6653369999989988999999767443899849989999999998499999998614378768998
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=99.65 E-value=9.8e-17 Score=133.76 Aligned_cols=59 Identities=25% Similarity=0.457 Sum_probs=56.0
Q ss_pred EEEEEEEEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEE
Q ss_conf 999977998379999953353066669978999879998988999999402269997162
Q 000746 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1243 Ief~nVsf~Y~~~~~~VLk~Isl~I~pGekVaIVGrTGSGKSTLi~lL~Rl~e~~~G~I~ 1302 (1303)
|+++||+|+|++ .++||+||||+|+|||++||||+||||||||+++|.|+++|++|+|.
T Consensus 2 le~knvsf~Y~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~ 60 (242)
T d1mv5a_ 2 LSARHVDFAYDD-SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60 (242)
T ss_dssp EEEEEEEECSSS-SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEE
T ss_pred EEEEEEEEECCC-CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEE
T ss_conf 799988998799-98414225899859999999999999799999999996098987798
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.43 E-value=7.5e-14 Score=112.90 Aligned_cols=60 Identities=30% Similarity=0.441 Sum_probs=55.5
Q ss_pred EEEEEEEEEECCCCC--CCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEE
Q ss_conf 999977998379999--953353066669978999879998988999999402269997162
Q 000746 1243 IKFEDVVLRYRPELP--PVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1243 Ief~nVsf~Y~~~~~--~VLk~Isl~I~pGekVaIVGrTGSGKSTLi~lL~Rl~e~~~G~I~ 1302 (1303)
|+++||+++|+.+.. .+|+|+||+|++||.+||+|+||||||||++++.++++|++|+|.
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~ 63 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVY 63 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEE
T ss_conf 89990799948998208987133778849979999889999821655750688777766269
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=99.42 E-value=1.4e-13 Score=110.93 Aligned_cols=59 Identities=27% Similarity=0.479 Sum_probs=55.6
Q ss_pred EEEEEEEEEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEE
Q ss_conf 0999977998379999953353066669978999879998988999999402269997162
Q 000746 1242 SIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1242 ~Ief~nVsf~Y~~~~~~VLk~Isl~I~pGekVaIVGrTGSGKSTLi~lL~Rl~e~~~G~I~ 1302 (1303)
.|+++|++.+|.. .+||+||||+|++||.+||+|++|||||||+++|.++++|++|+|.
T Consensus 2 ~Lev~nl~k~yg~--~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~ 60 (258)
T d1b0ua_ 2 KLHVIDLHKRYGG--HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAII 60 (258)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred EEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEE
T ss_conf 6999978999899--9988150668869979999989998299999999747667899779
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.40 E-value=6.3e-14 Score=113.48 Aligned_cols=61 Identities=21% Similarity=0.381 Sum_probs=57.2
Q ss_pred EEEEEEEEEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEE
Q ss_conf 0999977998379999953353066669978999879998988999999402269997162
Q 000746 1242 SIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1242 ~Ief~nVsf~Y~~~~~~VLk~Isl~I~pGekVaIVGrTGSGKSTLi~lL~Rl~e~~~G~I~ 1302 (1303)
.|+++|++.+|+.+...+|+||||+|++||.+||+|+||||||||+++|.++++|++|+|.
T Consensus 3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~ 63 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY 63 (242)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEE
T ss_pred EEEEEEEEEEECCCCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
T ss_conf 8999757999889998998040789879989999989998099999999758688874599
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=99.40 E-value=2e-13 Score=109.90 Aligned_cols=59 Identities=22% Similarity=0.368 Sum_probs=55.6
Q ss_pred EEEEEEEEEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEE
Q ss_conf 0999977998379999953353066669978999879998988999999402269997162
Q 000746 1242 SIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1242 ~Ief~nVsf~Y~~~~~~VLk~Isl~I~pGekVaIVGrTGSGKSTLi~lL~Rl~e~~~G~I~ 1302 (1303)
.|+++||+.+|.+ .++|+||||+|++||.+||+|++|||||||++++.++++|++|+|.
T Consensus 3 ~i~v~nl~k~yg~--~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~ 61 (240)
T d1g2912 3 GVRLVDVWKVFGE--VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIY 61 (240)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEE
T ss_pred CEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE
T ss_conf 1899869999899--9998560668869989999999998099999999648788989899
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=99.40 E-value=2.2e-13 Score=109.50 Aligned_cols=60 Identities=22% Similarity=0.444 Sum_probs=55.7
Q ss_pred EEEEEEEEEECCCCC--CCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEE
Q ss_conf 999977998379999--953353066669978999879998988999999402269997162
Q 000746 1243 IKFEDVVLRYRPELP--PVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1243 Ief~nVsf~Y~~~~~--~VLk~Isl~I~pGekVaIVGrTGSGKSTLi~lL~Rl~e~~~G~I~ 1302 (1303)
|+++|++.+|+.+.. .||+||||+|++||.+||+|+||||||||++++.++.+|++|+|.
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~ 63 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVL 63 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEE
T ss_conf 79982799969998148986150578869979999899989888999987588636677328
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.40 E-value=2.4e-13 Score=109.30 Aligned_cols=59 Identities=22% Similarity=0.405 Sum_probs=55.8
Q ss_pred EEEEEEEEEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEE
Q ss_conf 0999977998379999953353066669978999879998988999999402269997162
Q 000746 1242 SIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1242 ~Ief~nVsf~Y~~~~~~VLk~Isl~I~pGekVaIVGrTGSGKSTLi~lL~Rl~e~~~G~I~ 1302 (1303)
.|+++|++.+|.+ ..||+||||+|++||.+||+|++|||||||++++.|+++|++|+|.
T Consensus 6 ~I~v~nlsk~yg~--~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~ 64 (239)
T d1v43a3 6 EVKLENLTKRFGN--FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY 64 (239)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEE
T ss_pred EEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE
T ss_conf 4999879999999--9998130678879989999999998299999999758999878799
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=99.39 E-value=3e-13 Score=108.56 Aligned_cols=60 Identities=27% Similarity=0.524 Sum_probs=56.8
Q ss_pred CEEEEEEEEEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEE
Q ss_conf 40999977998379999953353066669978999879998988999999402269997162
Q 000746 1241 GSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1241 G~Ief~nVsf~Y~~~~~~VLk~Isl~I~pGekVaIVGrTGSGKSTLi~lL~Rl~e~~~G~I~ 1302 (1303)
|.|+.+|++.+|.. .+||+|+||+|++||.+||+|++|||||||+++|.++++|++|+|.
T Consensus 1 gaI~v~nl~k~yg~--~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~ 60 (238)
T d1vpla_ 1 GAVVVKDLRKRIGK--KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT 60 (238)
T ss_dssp CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred CCEEEEEEEEEECC--EEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
T ss_conf 97899958999999--9998062568848979999999999999999999669887888799
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.38 E-value=2.6e-13 Score=109.03 Aligned_cols=58 Identities=26% Similarity=0.522 Sum_probs=55.1
Q ss_pred EEEEEEEEEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEE
Q ss_conf 0999977998379999953353066669978999879998988999999402269997162
Q 000746 1242 SIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1242 ~Ief~nVsf~Y~~~~~~VLk~Isl~I~pGekVaIVGrTGSGKSTLi~lL~Rl~e~~~G~I~ 1302 (1303)
.||++|++++|+ .+||+|+||+|++||.+||+|++|||||||++++.++++|++|+|.
T Consensus 2 ~lev~~ls~~y~---~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~ 59 (200)
T d1sgwa_ 2 KLEIRDLSVGYD---KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 59 (200)
T ss_dssp EEEEEEEEEESS---SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred EEEEEEEEEEEC---CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE
T ss_conf 599998999939---9288420889859989999999997199999999662056778899
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.37 E-value=1.9e-14 Score=117.21 Aligned_cols=60 Identities=28% Similarity=0.498 Sum_probs=53.4
Q ss_pred CCEEEEEEEEEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEC
Q ss_conf 6409999779983799999533530666699789998799989889999994022699971629
Q 000746 1240 SGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENIH 1303 (1303)
Q Consensus 1240 ~G~Ief~nVsf~Y~~~~~~VLk~Isl~I~pGekVaIVGrTGSGKSTLi~lL~Rl~e~~~G~I~~ 1303 (1303)
.+.|+|+|+++.| .|||+||||+|++||++||||++|||||||+++|.|+++|++|+|.+
T Consensus 36 ~~~i~~~~~~~~g----~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~ 95 (281)
T d1r0wa_ 36 ENNVSFSHLCLVG----NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKH 95 (281)
T ss_dssp ----CHHHHHHTT----CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEC
T ss_pred CCCEEEEECCCCC----CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 8967999769899----76773759998599999999899982999999995797478828999
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=99.34 E-value=6.9e-13 Score=105.97 Aligned_cols=60 Identities=23% Similarity=0.467 Sum_probs=55.9
Q ss_pred CEEEEEEEEEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEE
Q ss_conf 40999977998379999953353066669978999879998988999999402269997162
Q 000746 1241 GSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1241 G~Ief~nVsf~Y~~~~~~VLk~Isl~I~pGekVaIVGrTGSGKSTLi~lL~Rl~e~~~G~I~ 1302 (1303)
--++.+|++.+|.. ..||+||||+|++||.+||+|++|||||||++++.++++|++|+|.
T Consensus 5 ~~Lev~~l~k~yg~--~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~ 64 (240)
T d1ji0a_ 5 IVLEVQSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKII 64 (240)
T ss_dssp EEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred EEEEEEEEEEEECC--EEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
T ss_conf 07999618999899--8888302578889979999999998599999999678888803898
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.33 E-value=8.3e-13 Score=105.37 Aligned_cols=59 Identities=24% Similarity=0.459 Sum_probs=55.4
Q ss_pred EEEEEEEEEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEE
Q ss_conf 0999977998379999953353066669978999879998988999999402269997162
Q 000746 1242 SIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1242 ~Ief~nVsf~Y~~~~~~VLk~Isl~I~pGekVaIVGrTGSGKSTLi~lL~Rl~e~~~G~I~ 1302 (1303)
-++.+|++.+|.. .+||+||||+|++||.+||+|++|||||||+++|.+++.|++|+|.
T Consensus 4 iL~v~nlsk~yg~--~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~ 62 (254)
T d1g6ha_ 4 ILRTENIVKYFGE--FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVY 62 (254)
T ss_dssp EEEEEEEEEEETT--EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred EEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
T ss_conf 6999778999799--6887121799889979999999998499999999779768873799
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=98.71 E-value=4.3e-10 Score=85.72 Aligned_cols=126 Identities=13% Similarity=0.054 Sum_probs=76.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEC-CEEEEE-----------CCCCCCCCCCHHHHHCCCCCCCHHHHHH
Q ss_conf 9999949999867899998469999999669994-917998-----------1686566655889970499999565899
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR-GTVAYV-----------PQISWIFNATLRKNILFGSEFDPAKYWK 736 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge~~~~~g~~~~~~-~~iayv-----------~Q~pwl~~~TireNI~~g~~~d~~~y~~ 736 (1303)
.++|+||+|||||||++.++|++++..|+..... ....+. ++.+.+...+..++..+++.
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 73 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSY-------- 73 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTE--------
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_conf 899998999389999999981488886469987713288887653112336677788754113455443023--------
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH---------------------HHHHHHHC--CCCEE
Q ss_conf 99898238885109999973114898877668999999999999---------------------89986750--99879
Q 000746 737 TVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF---------------------NSCIKEEL--RGKTR 793 (1303)
Q Consensus 737 vi~ac~L~~di~~lp~gd~T~ige~G~~LSGGQkqRiaLARAi~---------------------~~~i~~~l--~~~Tv 793 (1303)
.+......+++|+++|.+++++.. .+.+...+ .++|+
T Consensus 74 --------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~~~~~i 133 (178)
T d1ye8a1 74 --------------------GVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNV 133 (178)
T ss_dssp --------------------EECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEE
T ss_pred --------------------HCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCEE
T ss_conf --------------------037625665320137899999974099742302777310045799999998750579789
Q ss_pred EEEECCCCCCCCCCEEEEEECCEEEEECC
Q ss_conf 99924999400149799993987999439
Q 000746 794 ILVTNQLHFLPHVDRIILVSEGMIKEEGS 822 (1303)
Q Consensus 794 ilvTH~~~~l~~aD~ii~l~~G~i~~~G~ 822 (1303)
++++|+....+.+|++..+++|++.+-+.
T Consensus 134 l~~~h~~~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 134 VATIPIRDVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp EEECCSSCCSHHHHHHHTCTTCEEEECCT
T ss_pred EEEECCHHHHHHHCEEEEEECCEEEEECC
T ss_conf 99974477898636599871999999899
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.05 E-value=0.00012 Score=46.26 Aligned_cols=27 Identities=30% Similarity=0.528 Sum_probs=22.1
Q ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 6572499699999499998678999984
Q 000746 661 NLDIPVGSLVAIVGGTGEGKTSLVSAML 688 (1303)
Q Consensus 661 ~l~i~~G~~~~ivG~~GsGKSTLl~~ll 688 (1303)
.+.+.++ +++++||+||||||++.||.
T Consensus 19 ~i~f~~~-lnvlvG~NgsGKS~iL~Ai~ 45 (308)
T d1e69a_ 19 LIGFSDR-VTAIVGPNGSGKSNIIDAIK 45 (308)
T ss_dssp EEECCSS-EEEEECCTTTCSTHHHHHHH
T ss_pred EEECCCC-EEEEECCCCCCHHHHHHHHH
T ss_conf 9967998-19999999984899999999
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.62 E-value=0.00078 Score=40.48 Aligned_cols=24 Identities=38% Similarity=0.560 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999994999986789999846999
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGELP 692 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge~~ 692 (1303)
.++|+|++|+|||||+++|+|.-.
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~ 81 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGN 81 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCT
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 799989999978999999958886
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.59 E-value=0.00099 Score=39.75 Aligned_cols=30 Identities=30% Similarity=0.393 Sum_probs=26.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 996999994999986789999846999999
Q 000746 666 VGSLVAIVGGTGEGKTSLVSAMLGELPPLK 695 (1303)
Q Consensus 666 ~G~~~~ivG~~GsGKSTLl~~llge~~~~~ 695 (1303)
+|+.++++|++|.|||||+++|+|+.....
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T 123 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRV 123 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHC
T ss_conf 698089978898778888773053555010
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=96.40 E-value=0.011 Score=32.20 Aligned_cols=125 Identities=18% Similarity=0.285 Sum_probs=66.7
Q ss_pred CCCEEEEEECCCCEEEEECCCCCCHHHHHHHHH--------CCCCCCCCCEEEECCEEEEECCCCCCC-CCCHHHHHCCC
Q ss_conf 530056572499699999499998678999984--------699999996699949179981686566-65588997049
Q 000746 656 TLSNINLDIPVGSLVAIVGGTGEGKTSLVSAML--------GELPPLKDASVVIRGTVAYVPQISWIF-NATLRKNILFG 726 (1303)
Q Consensus 656 ~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ll--------ge~~~~~g~~~~~~~~iayv~Q~pwl~-~~TireNI~~g 726 (1303)
+-+|+.+ . +++..|+|||.+||||+++.+. |.+-|-+. +-++.--.|+ .--..|++.-|
T Consensus 27 VpNdi~~--~-~~~~iiTGpN~~GKSt~lk~i~l~~ilAq~G~~vpA~~---------~~i~~~d~I~~~~~~~d~~~~~ 94 (224)
T d1ewqa2 27 VPNDLEM--A-HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEE---------AHLPLFDGIYTRIGASDDLAGG 94 (224)
T ss_dssp CCEEEEE--S-SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSE---------EEECCCSEEEEECCC------C
T ss_pred ECCEEEE--C-CCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEECCC---------EEEEECCEEEEEECCCCCCCCC
T ss_conf 4555884--7-86799978873453234556589999985250461375---------1994011699998777602378
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf 99995658999989823888510999997311489887766899999999999989986750998799992499940
Q 000746 727 SEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFNSCIKEELRGKTRILVTNQLHFL 803 (1303)
Q Consensus 727 ~~~d~~~y~~vi~ac~L~~di~~lp~gd~T~ige~G~~LSGGQkqRiaLARAi~~~~i~~~l~~~TvilvTH~~~~l 803 (1303)
.. .+.. +...+..-+........-.+.|-|.. ---....++|.|+++.... .+.+++++||..+..
T Consensus 95 ~S----tF~~--el~~~~~il~~~~~~sLvliDE~~~g--T~~~eg~ala~aile~L~~---~~~~~i~tTH~~eL~ 160 (224)
T d1ewqa2 95 KS----TFMV--EMEEVALILKEATENSLVLLDEVGRG--TSSLDGVAIATAVAEALHE---RRAYTLFATHYFELT 160 (224)
T ss_dssp CS----HHHH--HHHHHHHHHHHCCTTEEEEEESTTTT--SCHHHHHHHHHHHHHHHHH---HTCEEEEECCCHHHH
T ss_pred CC----HHHH--HHHHHHHHHCCCCCCCEEEECCCCCC--CCHHHHCCHHHHHHHHHHH---CCCCEEEEEECHHHH
T ss_conf 30----7898--67889877502897727855454568--6233200258888888862---376137865202333
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=96.35 E-value=0.0011 Score=39.38 Aligned_cols=114 Identities=15% Similarity=0.145 Sum_probs=55.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC----CCCE-------EEECC-EEEEECCCCCCCCCCHHHHHCCCCCCCHHHHHH
Q ss_conf 99999499998678999984699999----9966-------99949-179981686566655889970499999565899
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGELPPL----KDAS-------VVIRG-TVAYVPQISWIFNATLRKNILFGSEFDPAKYWK 736 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge~~~~----~g~~-------~~~~~-~iayv~Q~pwl~~~TireNI~~g~~~d~~~y~~ 736 (1303)
.++++|++|+|||||+++|+|+-... .+.. ....+ .+-++. +|-++.. ....+.+..
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g~~i~viD-TPGl~~~----------~~~~~~~~~ 102 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIID-TPGLIEG----------GYINDMALN 102 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEE-CCCSEET----------TEECHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCEEEEEEEEEECCEEEEEEE-EECCCCC----------CCHHHHHHH
T ss_conf 89998999986999999985898413358897604678988986338899975-2134677----------524899999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 99898238885109999973114898877668999999999999899867509987999924999
Q 000746 737 TVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFNSCIKEELRGKTRILVTNQLH 801 (1303)
Q Consensus 737 vi~ac~L~~di~~lp~gd~T~ige~G~~LSGGQkqRiaLARAi~~~~i~~~l~~~TvilvTH~~~ 801 (1303)
.+..+....+ ++...-.+--....++..+++.+...+-+| .......++++.||--.
T Consensus 103 ~i~~~~~~~~----~~~il~v~~~~~~r~~~~~~~~l~~l~~~f----g~~~~~~~ivv~t~~D~ 159 (257)
T d1h65a_ 103 IIKSFLLDKT----IDVLLYVDRLDAYRVDNLDKLVAKAITDSF----GKGIWNKAIVALTHAQF 159 (257)
T ss_dssp HHHHHTTTCE----ECEEEEEEESSCCCCCHHHHHHHHHHHHHH----CGGGGGGEEEEEECCSC
T ss_pred HHHHHHHCCC----CCEEEEEEECCCCCCCHHHHHHHHHHHHHC----CHHHHHCEEEEEECCCC
T ss_conf 9999985689----876999997888778999999999999873----26566388999988644
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.27 E-value=0.0012 Score=39.02 Aligned_cols=37 Identities=32% Similarity=0.630 Sum_probs=29.0
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEE
Q ss_conf 24996999994999986789999846999999966999
Q 000746 664 IPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI 701 (1303)
Q Consensus 664 i~~G~~~~ivG~~GsGKSTLl~~llge~~~~~g~~~~~ 701 (1303)
++.+.-+.|+|++||||||+++++++++++.. ..+.+
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~~~~-rivti 199 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEE-RIISI 199 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSCTTC-CEEEE
T ss_pred HHHCCCEEEEEECCCCCHHHHHHHHHHCCCCC-CEEEC
T ss_conf 98378889994035662578999865301456-23311
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.20 E-value=0.0024 Score=36.91 Aligned_cols=28 Identities=21% Similarity=0.523 Sum_probs=23.8
Q ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 6572499699999499998678999984
Q 000746 661 NLDIPVGSLVAIVGGTGEGKTSLVSAML 688 (1303)
Q Consensus 661 ~l~i~~G~~~~ivG~~GsGKSTLl~~ll 688 (1303)
++.+..+.+++|+|++|||||+++.||.
T Consensus 19 ~i~f~~~~l~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 19 KVGFGESNFTSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp EEECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred EEECCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 9758999989999999998899999999
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.15 E-value=0.0099 Score=32.50 Aligned_cols=141 Identities=18% Similarity=0.246 Sum_probs=68.3
Q ss_pred CCEEEEEEEEEE----CCCCCCCCEEEEEECCCCEEEEECCCCCCHHHHHHHHH--------CCCCCCCCCEEEECCEEE
Q ss_conf 928999338972----89998530056572499699999499998678999984--------699999996699949179
Q 000746 639 PAVSIKNGNFSW----DSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAML--------GELPPLKDASVVIRGTVA 706 (1303)
Q Consensus 639 ~~i~~~~~~f~~----~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ll--------ge~~~~~g~~~~~~~~ia 706 (1303)
+.+.++++..-- ..+.++-+|+++. +.+....|+|||.|||||+++.+. |..-|-+. +
T Consensus 10 ~~l~i~~~rHPlle~~~~~~~VpNdi~l~-~~~~~~iiTGpN~~GKSt~lk~i~l~~~laq~G~~VpA~~---------a 79 (234)
T d1wb9a2 10 PGIRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQK---------V 79 (234)
T ss_dssp SCEEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSE---------E
T ss_pred CCEEEEEEECCEEECCCCCCCCCEEEEEC-CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEECCC---------E
T ss_conf 96899973787797446998264057988-9953999954673136899998799999987297674176---------6
Q ss_pred EECCCCCCC-CCCHHHHHCCCCC-CCHH--HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 981686566-6558899704999-9956--58999989823888510999997311489887766899999999999989
Q 000746 707 YVPQISWIF-NATLRKNILFGSE-FDPA--KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFNS 782 (1303)
Q Consensus 707 yv~Q~pwl~-~~TireNI~~g~~-~d~~--~y~~vi~ac~L~~di~~lp~gd~T~ige~G~~LSGGQkqRiaLARAi~~~ 782 (1303)
-++---.|+ .-...|++.-|.. |..| +..+.++ .....-.-.+.|-|..=+- ....++|.|+++.
T Consensus 80 ~~~~~d~I~~~~~~~d~~~~~~S~F~~E~~~~~~il~---------~~~~~sLvliDE~~~gT~~--~eg~~l~~a~l~~ 148 (234)
T d1wb9a2 80 EIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILH---------NATEYSLVLMDEIGRGTST--YDGLSLAWACAEN 148 (234)
T ss_dssp EECCCCEEEEEEC-----------CHHHHHHHHHHHH---------HCCTTEEEEEESCCCCSSS--SHHHHHHHHHHHH
T ss_pred ECCCCHHHEEEECCCCCCCCCHHHHHHHHHHHHHHHH---------HCCCCCEEEECCCCCCCCH--HHHHHHHHHHHHH
T ss_conf 6134420234874675343653189999999999997---------4546608853222358774--5666789876454
Q ss_pred HHHHHCCCCEEEEEECCCCC
Q ss_conf 98675099879999249994
Q 000746 783 CIKEELRGKTRILVTNQLHF 802 (1303)
Q Consensus 783 ~i~~~l~~~TvilvTH~~~~ 802 (1303)
.... .+..++++||....
T Consensus 149 l~~~--~~~~~i~tTH~~~l 166 (234)
T d1wb9a2 149 LANK--IKALTLFATHYFEL 166 (234)
T ss_dssp HHHT--TCCEEEEECSCGGG
T ss_pred HHCC--CCCEEEEECCHHHH
T ss_conf 3204--54428985246877
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.04 E-value=0.0032 Score=36.05 Aligned_cols=23 Identities=39% Similarity=0.560 Sum_probs=9.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 97899987999898899999940
Q 000746 1270 SEKVGIVGRTGAGKSSMLNALFR 1292 (1303)
Q Consensus 1270 GekVaIVGrTGSGKSTLi~lL~R 1292 (1303)
|++.+++|.||.|||||+++|..
T Consensus 95 ~kt~~~~G~SGVGKSTLiN~L~~ 117 (225)
T d1u0la2 95 GKISTMAGLSGVGKSSLLNAINP 117 (225)
T ss_dssp SSEEEEECSTTSSHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHCC
T ss_conf 98089978898778888773053
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.97 E-value=0.002 Score=37.58 Aligned_cols=27 Identities=26% Similarity=0.576 Sum_probs=24.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 969999949999867899998469999
Q 000746 667 GSLVAIVGGTGEGKTSLVSAMLGELPP 693 (1303)
Q Consensus 667 G~~~~ivG~~GsGKSTLl~~llge~~~ 693 (1303)
|++++|+||+||||+|+.+.|..+++.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 749999899999999999999845899
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.97 E-value=0.0024 Score=36.96 Aligned_cols=18 Identities=22% Similarity=0.237 Sum_probs=10.3
Q ss_pred EEEEECCCCEEEEECCCC
Q ss_conf 565724996999994999
Q 000746 660 INLDIPVGSLVAIVGGTG 677 (1303)
Q Consensus 660 i~l~i~~G~~~~ivG~~G 677 (1303)
++..++.|..+.++.|.-
T Consensus 99 l~a~Lp~G~Rv~~v~~p~ 116 (323)
T d1g6oa_ 99 LSSNLANGERVQIVLSPV 116 (323)
T ss_dssp EEEECTTSCEEEEECTTT
T ss_pred EEEEECCCEEEEEECCCC
T ss_conf 667726853899824676
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.62 E-value=0.0011 Score=39.28 Aligned_cols=30 Identities=30% Similarity=0.372 Sum_probs=26.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 996999994999986789999846999999
Q 000746 666 VGSLVAIVGGTGEGKTSLVSAMLGELPPLK 695 (1303)
Q Consensus 666 ~G~~~~ivG~~GsGKSTLl~~llge~~~~~ 695 (1303)
+|+.++++|++|.|||||+++|+|+.....
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t 125 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRT 125 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHH
T ss_conf 356499987787348789875151767640
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.59 E-value=0.0051 Score=34.60 Aligned_cols=27 Identities=22% Similarity=0.434 Sum_probs=24.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 996999994999986789999846999
Q 000746 666 VGSLVAIVGGTGEGKTSLVSAMLGELP 692 (1303)
Q Consensus 666 ~G~~~~ivG~~GsGKSTLl~~llge~~ 692 (1303)
.|++++++|++||||||+.+.|...+.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPG 29 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 985999988999988999999999959
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.58 E-value=0.0031 Score=36.14 Aligned_cols=111 Identities=16% Similarity=0.245 Sum_probs=57.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCEEEEECCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 49969999949999867899998469999999669994917998168656665588997049999956589999898238
Q 000746 665 PVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQ 744 (1303)
Q Consensus 665 ~~G~~~~ivG~~GsGKSTLl~~llge~~~~~g~~~~~~~~iayv~Q~pwl~~~TireNI~~g~~~d~~~y~~vi~ac~L~ 744 (1303)
.++.++.++||+||||||.+.+++.+++......+.+...+-|.- ++...-.+ .+-+...|...++++ |.
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPiE~~~--~~~~q~~v-------~~~~~~~~~~~l~~~-lR 225 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDI--DGIGQTQV-------NPRVDMTFARGLRAI-LR 225 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCC--SSSEEEEC-------BGGGTBCHHHHHHHH-GG
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCC--CCCCEEEE-------CCCCCCCHHHHHHHH-HH
T ss_conf 410548987678777447799986662578746999626743456--78870265-------587677999999999-84
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC
Q ss_conf 885109999973114898877668999999999999899867509987999924999400
Q 000746 745 HDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFNSCIKEELRGKTRILVTNQLHFLP 804 (1303)
Q Consensus 745 ~di~~lp~gd~T~ige~G~~LSGGQkqRiaLARAi~~~~i~~~l~~~TvilvTH~~~~l~ 804 (1303)
.| | |--.|||- --.+-.+.++ .....|..|+-.-|--+...
T Consensus 226 ~d----P--Dvi~igEi----Rd~~ta~~a~---------~aa~tGhlV~tTlHa~~a~~ 266 (401)
T d1p9ra_ 226 QD----P--DVVMVGEI----RDLETAQIAV---------QASLTGHLVMSTLHTNTAVG 266 (401)
T ss_dssp GC----C--SEEEESCC----CSHHHHHHHH---------HHHHTTCEEEEEECCSSSHH
T ss_pred HC----C--CEEEECCC----CCHHHHHHHH---------HHHHCCCEEEEEECCCCHHH
T ss_conf 13----8--88984576----8759999999---------99724985899833676676
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.48 E-value=0.0044 Score=35.04 Aligned_cols=28 Identities=36% Similarity=0.599 Sum_probs=25.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9969999949999867899998469999
Q 000746 666 VGSLVAIVGGTGEGKTSLVSAMLGELPP 693 (1303)
Q Consensus 666 ~G~~~~ivG~~GsGKSTLl~~llge~~~ 693 (1303)
+|.+++|+||+|+||+||.+.|+...+.
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p~ 28 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQPL 28 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 9809999999999999999999863986
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.46 E-value=0.01 Score=32.34 Aligned_cols=46 Identities=13% Similarity=0.302 Sum_probs=33.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCEEEEECCCCCCCCCCH
Q ss_conf 999994999986789999846999999966999491799816865666558
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISWIFNATL 719 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge~~~~~g~~~~~~~~iayv~Q~pwl~~~Ti 719 (1303)
+++|.|++||||||+.+.|-..+....+ ..++..++++-+......
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~-----~~~v~~Is~D~F~~~~~~ 127 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPE-----HRRVELITTDGFLHPNQV 127 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTT-----CCCEEEEEGGGGBCCHHH
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCC-----CCCEEEEEEEEEECCCHH
T ss_conf 9999689999876899999999730468-----996599952156898458
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.13 E-value=0.011 Score=32.09 Aligned_cols=47 Identities=17% Similarity=0.149 Sum_probs=20.3
Q ss_pred HHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 851099999731148988776689999999999998998675099879999249994
Q 000746 746 DLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFNSCIKEELRGKTRILVTNQLHF 802 (1303)
Q Consensus 746 di~~lp~gd~T~ige~G~~LSGGQkqRiaLARAi~~~~i~~~l~~~TvilvTH~~~~ 802 (1303)
.+...|.|.--..|.-|..-|- -- .++++.. . -.++.++.+-.-+++
T Consensus 152 ~l~~~~~GliLvtGpTGSGKST---Tl----~~~l~~~-~--~~~~~i~tiEdPiE~ 198 (401)
T d1p9ra_ 152 RLIKRPHGIILVTGPTGSGKST---TL----YAGLQEL-N--SSERNILTVEDPIEF 198 (401)
T ss_dssp HHHTSSSEEEEEECSTTSCHHH---HH----HHHHHHH-C--CTTSCEEEEESSCCS
T ss_pred HHHHHHHCEEEEECCCCCCCCH---HH----HHHHHHH-C--CCCCEEEEECCCCCC
T ss_conf 9986410548987678777447---79----9986662-5--787469996267434
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=94.95 E-value=0.0065 Score=33.84 Aligned_cols=41 Identities=20% Similarity=0.184 Sum_probs=28.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCEEEEECCCC
Q ss_conf 499699999499998678999984699999996699949179981686
Q 000746 665 PVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQIS 712 (1303)
Q Consensus 665 ~~G~~~~ivG~~GsGKSTLl~~llge~~~~~g~~~~~~~~iayv~Q~p 712 (1303)
.+.-.++|+|+.|+|||||+..+.+.+.. .|. ++|.+.=+|
T Consensus 52 ~~~~~IgitG~pGaGKSTLi~~l~~~~~~-~g~------~vavlavDp 92 (327)
T d2p67a1 52 GNTLRLGVTGTPGAGKSTFLEAFGMLLIR-EGL------KVAVIAVDP 92 (327)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHH-TTC------CEEEEEECC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHH-CCC------CEEEECCCC
T ss_conf 98328974389999899999999999975-698------332203777
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=94.93 E-value=0.0047 Score=34.84 Aligned_cols=37 Identities=22% Similarity=0.377 Sum_probs=27.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCEEEEECCCC
Q ss_conf 99999499998678999984699999996699949179981686
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQIS 712 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge~~~~~g~~~~~~~~iayv~Q~p 712 (1303)
.++|+|++|||||||++.|+.++.. .|. ++++...++
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~-~g~------~v~v~~~d~ 40 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCA-RGI------RPGLIKHTH 40 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH-TTC------CEEEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCC------EEEEECCCC
T ss_conf 8999918999899999999999997-797------687741466
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.87 E-value=0.0029 Score=36.32 Aligned_cols=19 Identities=16% Similarity=0.235 Sum_probs=10.3
Q ss_pred HHHHHCCCCCHHHHHHHHH
Q ss_conf 3356627512467999999
Q 000746 896 QEERETGIVSGSVLTRYKN 914 (1303)
Q Consensus 896 ~e~~~~g~v~~~~y~~Y~~ 914 (1303)
.+.-+.|.++..-|..|.+
T Consensus 201 ~~av~~g~i~~~Ry~~Y~~ 219 (231)
T d1t9ha2 201 KQAVEDGELKQYRYDHYVE 219 (231)
T ss_dssp HHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHH
T ss_conf 9999869987999999999
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=94.73 E-value=0.0081 Score=33.12 Aligned_cols=23 Identities=22% Similarity=0.524 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999499998678999984699
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge~ 691 (1303)
.++|+|++|+|||||+++|.|+-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99998999987999999852987
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=94.71 E-value=0.012 Score=31.80 Aligned_cols=28 Identities=39% Similarity=0.611 Sum_probs=25.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4996999994999986789999846999
Q 000746 665 PVGSLVAIVGGTGEGKTSLVSAMLGELP 692 (1303)
Q Consensus 665 ~~G~~~~ivG~~GsGKSTLl~~llge~~ 692 (1303)
|+|-.++|.|+.||||||+.+.|...+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9988899982899988999999999858
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.70 E-value=0.012 Score=31.96 Aligned_cols=28 Identities=21% Similarity=0.290 Sum_probs=24.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4996999994999986789999846999
Q 000746 665 PVGSLVAIVGGTGEGKTSLVSAMLGELP 692 (1303)
Q Consensus 665 ~~G~~~~ivG~~GsGKSTLl~~llge~~ 692 (1303)
++|.++.++|++||||||+.+.|...+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9976999889999999999999999986
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=94.61 E-value=0.021 Score=30.22 Aligned_cols=43 Identities=28% Similarity=0.448 Sum_probs=33.2
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCEEEEECCCC
Q ss_conf 72499699999499998678999984699999996699949179981686
Q 000746 663 DIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQIS 712 (1303)
Q Consensus 663 ~i~~G~~~~ivG~~GsGKSTLl~~llge~~~~~g~~~~~~~~iayv~Q~p 712 (1303)
=++.|.++-+.|+.|||||++...++...... |+ .+.|+.-+-
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~-g~------~v~yiDtE~ 95 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKA-GG------TCAFIDAEH 95 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHT-TC------CEEEEESSC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC-CC------EEEEEECCC
T ss_conf 86675478980587652279999999999707-99------899998876
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.51 E-value=0.012 Score=31.91 Aligned_cols=24 Identities=29% Similarity=0.410 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999994999986789999846999
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGELP 692 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge~~ 692 (1303)
+++|.|++|||||||.+.|...+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789887899999999999836
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=94.50 E-value=0.013 Score=31.54 Aligned_cols=59 Identities=14% Similarity=0.192 Sum_probs=36.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCEEEEECCCCCCCCCCHHHHHCCCCCCCHHHHHH
Q ss_conf 499699999499998678999984699999996699949179981686566655889970499999565899
Q 000746 665 PVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWK 736 (1303)
Q Consensus 665 ~~G~~~~ivG~~GsGKSTLl~~llge~~~~~g~~~~~~~~iayv~Q~pwl~~~TireNI~~g~~~d~~~y~~ 736 (1303)
..+.++++.|++||||||+.+.|...+. ..... ..++...........+.++..+....
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l~----~~~~~---------~d~~~~~~~~~~~~~~~~~~~~~~~~ 62 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQLH----AAFLD---------GDFLHPRRNIEKMASGEPLNDDDRKP 62 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHT----CEEEE---------GGGGCCHHHHHHHHTTCCCCHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHC----CCEEC---------HHHHHHHHHHHHHCCCCCEEHHHHHH
T ss_conf 9871899989999898999999999869----78310---------36645998853002476300113477
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=94.45 E-value=0.012 Score=31.79 Aligned_cols=27 Identities=26% Similarity=0.605 Sum_probs=23.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 996999994999986789999846999
Q 000746 666 VGSLVAIVGGTGEGKTSLVSAMLGELP 692 (1303)
Q Consensus 666 ~G~~~~ivG~~GsGKSTLl~~llge~~ 692 (1303)
..+++.|.|++||||||+.+.|...+.
T Consensus 2 ~~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 985999989999998999999999728
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.38 E-value=0.013 Score=31.70 Aligned_cols=26 Identities=15% Similarity=0.497 Sum_probs=23.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 96999994999986789999846999
Q 000746 667 GSLVAIVGGTGEGKTSLVSAMLGELP 692 (1303)
Q Consensus 667 G~~~~ivG~~GsGKSTLl~~llge~~ 692 (1303)
.++++|+||+|+||+||.+.|+.+.+
T Consensus 3 ~k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 3 RKTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 77199999899999999999997097
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=94.37 E-value=0.014 Score=31.39 Aligned_cols=24 Identities=17% Similarity=0.472 Sum_probs=20.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 699999499998678999984699
Q 000746 668 SLVAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 668 ~~~~ivG~~GsGKSTLl~~llge~ 691 (1303)
++++++|++||||||+.+.|..+.
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~ 26 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKN 26 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 799998999999999999999957
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=94.33 E-value=0.015 Score=31.20 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999499998678999984699
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge~ 691 (1303)
.++|+|+.|||||||++.|+...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89999189983999999999988
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=94.20 E-value=0.012 Score=31.97 Aligned_cols=24 Identities=38% Similarity=0.619 Sum_probs=21.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 699999499998678999984699
Q 000746 668 SLVAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 668 ~~~~ivG~~GsGKSTLl~~llge~ 691 (1303)
+.++|+|+.|||||||.+.|...+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289998999998999999999984
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.18 E-value=0.021 Score=30.09 Aligned_cols=29 Identities=24% Similarity=0.377 Sum_probs=25.7
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 72499699999499998678999984699
Q 000746 663 DIPVGSLVAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 663 ~i~~G~~~~ivG~~GsGKSTLl~~llge~ 691 (1303)
=+++|+++.|.|++|||||+|+.-++...
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 98599799999589999999999999999
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=94.17 E-value=0.012 Score=31.91 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=22.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6999994999986789999846999
Q 000746 668 SLVAIVGGTGEGKTSLVSAMLGELP 692 (1303)
Q Consensus 668 ~~~~ivG~~GsGKSTLl~~llge~~ 692 (1303)
++++|+||+||||||+.+.|...+.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 0899989999998999999999809
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.09 E-value=0.018 Score=30.62 Aligned_cols=45 Identities=24% Similarity=0.311 Sum_probs=30.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCEEEEECCCCCCC
Q ss_conf 99999499998678999984699999996699949179981686566
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISWIF 715 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge~~~~~g~~~~~~~~iayv~Q~pwl~ 715 (1303)
+++|.|++||||||+.+.|...+.... .-.....+..++++-+..
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~~--~~~~~~~~~vi~~D~yy~ 48 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQNE--VDYRQKQVVILSQDSFYR 48 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGG--SCGGGCSEEEEEGGGGBC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCHHC--CCCCCCCEEEEECCCCCC
T ss_conf 999989997879999999999964101--345788439993465322
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.08 E-value=0.01 Score=32.42 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=28.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCEEEEECCCC
Q ss_conf 699999499998678999984699999996699949179981686
Q 000746 668 SLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQIS 712 (1303)
Q Consensus 668 ~~~~ivG~~GsGKSTLl~~llge~~~~~g~~~~~~~~iayv~Q~p 712 (1303)
+.++|+|+.|||||||+..|+.++.. +|. +++.+..++
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~-~g~------~v~vik~d~ 39 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVR-EGW------RVGTVKHHG 39 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH-TTC------CEEEEECCC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHH-CCC------EEEEEEECC
T ss_conf 09999809999899999999999986-798------379998316
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.94 E-value=0.022 Score=30.03 Aligned_cols=27 Identities=22% Similarity=0.362 Sum_probs=22.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 969999949999867899998469999
Q 000746 667 GSLVAIVGGTGEGKTSLVSAMLGELPP 693 (1303)
Q Consensus 667 G~~~~ivG~~GsGKSTLl~~llge~~~ 693 (1303)
+++++|.|+.||||||+++.|...+..
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~ 27 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLRK 27 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 988999899998989999999999987
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=93.86 E-value=0.00082 Score=40.33 Aligned_cols=34 Identities=21% Similarity=0.411 Sum_probs=27.9
Q ss_pred CCCEEEEEECCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 53005657249969999949999867899998469
Q 000746 656 TLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGE 690 (1303)
Q Consensus 656 ~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llge 690 (1303)
.+++..+++.+| +++|+|++||||||++.||.-.
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~ 47 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTA 47 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHH
T ss_pred CEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHH
T ss_conf 870279974998-0899889999879999999999
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=93.78 E-value=0.028 Score=29.19 Aligned_cols=27 Identities=22% Similarity=0.469 Sum_probs=24.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 499699999499998678999984699
Q 000746 665 PVGSLVAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 665 ~~G~~~~ivG~~GsGKSTLl~~llge~ 691 (1303)
|+|-.++++||.||||||..+.|...+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 996389998999998899999999986
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.69 E-value=0.01 Score=32.44 Aligned_cols=27 Identities=30% Similarity=0.348 Sum_probs=23.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 699999499998678999984699999
Q 000746 668 SLVAIVGGTGEGKTSLVSAMLGELPPL 694 (1303)
Q Consensus 668 ~~~~ivG~~GsGKSTLl~~llge~~~~ 694 (1303)
+.+.|+||+|+|||||++.+..++...
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~ 28 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSS 28 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 699998899971999999999999977
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.56 E-value=0.031 Score=28.92 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=23.2
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 249969999949999867899998469
Q 000746 664 IPVGSLVAIVGGTGEGKTSLVSAMLGE 690 (1303)
Q Consensus 664 i~~G~~~~ivG~~GsGKSTLl~~llge 690 (1303)
-++-+++.++|+.||||||+.+.++..
T Consensus 11 ~~~p~liil~G~pGsGKST~a~~l~~~ 37 (172)
T d1yj5a2 11 SPNPEVVVAVGFPGAGKSTFIQEHLVS 37 (172)
T ss_dssp CSSCCEEEEECCTTSSHHHHHHHHTGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 999989999899999899999999976
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.55 E-value=0.018 Score=30.58 Aligned_cols=25 Identities=32% Similarity=0.680 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999949999867899998469999
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGELPP 693 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge~~~ 693 (1303)
.++|+||+||||+||.+.|+.+.+.
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~~~~ 27 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 6999899999989999999974886
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=93.53 E-value=0.03 Score=29.07 Aligned_cols=25 Identities=40% Similarity=0.527 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9699999499998678999984699
Q 000746 667 GSLVAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 667 G~~~~ivG~~GsGKSTLl~~llge~ 691 (1303)
+=.++|+|++|+|||||+++++|.-
T Consensus 8 ~~kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 8 AIKVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 8889999999999999999997787
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=93.48 E-value=0.021 Score=30.11 Aligned_cols=25 Identities=40% Similarity=0.509 Sum_probs=22.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6999994999986789999846999
Q 000746 668 SLVAIVGGTGEGKTSLVSAMLGELP 692 (1303)
Q Consensus 668 ~~~~ivG~~GsGKSTLl~~llge~~ 692 (1303)
..+.+.||.||||||+.++|.+++.
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 7999889799889999999999865
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=93.38 E-value=0.031 Score=28.95 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999994999986789999846999
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGELP 692 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge~~ 692 (1303)
.++++|+.|+|||||++.|+|.-.
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~ 25 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKK 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899999999989999999967775
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=93.19 E-value=0.028 Score=29.28 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999499998678999984699
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge~ 691 (1303)
.++|+|+.||||||+.+.|...+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79898999999899999999997
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.16 E-value=0.037 Score=28.40 Aligned_cols=29 Identities=21% Similarity=0.344 Sum_probs=25.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 49969999949999867899998469999
Q 000746 665 PVGSLVAIVGGTGEGKTSLVSAMLGELPP 693 (1303)
Q Consensus 665 ~~G~~~~ivG~~GsGKSTLl~~llge~~~ 693 (1303)
++|.+++|.|+.||||||+.+.|...+..
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~ 29 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALCA 29 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 98059999899888999999999999987
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=93.11 E-value=0.035 Score=28.51 Aligned_cols=26 Identities=23% Similarity=0.551 Sum_probs=22.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99699999499998678999984699
Q 000746 666 VGSLVAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 666 ~G~~~~ivG~~GsGKSTLl~~llge~ 691 (1303)
+..+++|+||.||||||+.+.|...+
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99489998999998899999999997
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=93.05 E-value=0.038 Score=28.33 Aligned_cols=23 Identities=43% Similarity=0.694 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999499998678999984699
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge~ 691 (1303)
+++++|++|+|||||++.++|.-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.05 E-value=0.015 Score=31.24 Aligned_cols=27 Identities=33% Similarity=0.379 Sum_probs=23.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 996999994999986789999846999
Q 000746 666 VGSLVAIVGGTGEGKTSLVSAMLGELP 692 (1303)
Q Consensus 666 ~G~~~~ivG~~GsGKSTLl~~llge~~ 692 (1303)
+|..+.++|++||||||+.+.|...+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 996999889999999999999999997
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.01 E-value=0.039 Score=28.22 Aligned_cols=29 Identities=21% Similarity=0.373 Sum_probs=25.2
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 72499699999499998678999984699
Q 000746 663 DIPVGSLVAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 663 ~i~~G~~~~ivG~~GsGKSTLl~~llge~ 691 (1303)
=+++|+++.|.|+.|||||+|..-++-..
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~~~~ 58 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLAVTC 58 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHTTTT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98699699998389998899999999986
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=93.00 E-value=0.037 Score=28.39 Aligned_cols=25 Identities=40% Similarity=0.603 Sum_probs=22.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9699999499998678999984699
Q 000746 667 GSLVAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 667 G~~~~ivG~~GsGKSTLl~~llge~ 691 (1303)
|=.++++|++++|||||++.|.|.-
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9899998999998999999996888
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.00 E-value=0.033 Score=28.74 Aligned_cols=43 Identities=14% Similarity=0.211 Sum_probs=28.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCEEEEECCCCCCC
Q ss_conf 99999499998678999984699999996699949179981686566
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISWIF 715 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge~~~~~g~~~~~~~~iayv~Q~pwl~ 715 (1303)
+++|.|+.|||||||...|.-.+....+ ....++.++.+-+..
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L~~~~~----~~~~v~~iS~DdfY~ 71 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHLMEKYG----GEKSIGYASIDDFYL 71 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHG----GGSCEEEEEGGGGBC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHC----CCCCEEEECCCCCCC
T ss_conf 9983799878899999999999998727----786067635677778
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=92.97 E-value=0.04 Score=28.15 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=24.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 996999994999986789999846999
Q 000746 666 VGSLVAIVGGTGEGKTSLVSAMLGELP 692 (1303)
Q Consensus 666 ~G~~~~ivG~~GsGKSTLl~~llge~~ 692 (1303)
+|.+++|-|+.||||||+.+.|...+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 987899989988879999999999999
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.85 E-value=0.033 Score=28.71 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999499998678999984699
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge~ 691 (1303)
.++++|++|+|||||+++|.|+-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999988999999996898
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=92.84 E-value=0.02 Score=30.23 Aligned_cols=28 Identities=21% Similarity=0.526 Sum_probs=25.1
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 2499699999499998678999984699
Q 000746 664 IPVGSLVAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 664 i~~G~~~~ivG~~GsGKSTLl~~llge~ 691 (1303)
++++.++.|.||.||||||..+.|...+
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 4678289998999998799999999986
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.81 E-value=0.036 Score=28.45 Aligned_cols=24 Identities=29% Similarity=0.560 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999994999986789999846999
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGELP 692 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge~~ 692 (1303)
.++|+||+||||+|+.+.|+.+.+
T Consensus 2 pIvl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 2 PVVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 199999999999999999997488
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.75 E-value=0.026 Score=29.53 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=24.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 996999994999986789999846999
Q 000746 666 VGSLVAIVGGTGEGKTSLVSAMLGELP 692 (1303)
Q Consensus 666 ~G~~~~ivG~~GsGKSTLl~~llge~~ 692 (1303)
++++++|-|+.||||||+++.|...+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998899987888779999999999973
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=92.74 E-value=0.035 Score=28.51 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=21.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 699999499998678999984699
Q 000746 668 SLVAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 668 ~~~~ivG~~GsGKSTLl~~llge~ 691 (1303)
+.++++||.||||||+.+.|...+
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 749998999999999999999996
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=92.70 E-value=0.048 Score=27.56 Aligned_cols=29 Identities=34% Similarity=0.417 Sum_probs=26.2
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 24996999994999986789999846999
Q 000746 664 IPVGSLVAIVGGTGEGKTSLVSAMLGELP 692 (1303)
Q Consensus 664 i~~G~~~~ivG~~GsGKSTLl~~llge~~ 692 (1303)
+++|+++.|.|++|||||+++.-++-...
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~~~~ 51 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVENAC 51 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 86984999991899999999999999998
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=92.66 E-value=0.034 Score=28.61 Aligned_cols=28 Identities=25% Similarity=0.217 Sum_probs=23.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4996999994999986789999846999
Q 000746 665 PVGSLVAIVGGTGEGKTSLVSAMLGELP 692 (1303)
Q Consensus 665 ~~G~~~~ivG~~GsGKSTLl~~llge~~ 692 (1303)
++.-+++|-|+.||||||+++.|...++
T Consensus 7 ~kp~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 7 TQPFTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 9861999889999888999999998707
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=92.59 E-value=0.055 Score=27.14 Aligned_cols=36 Identities=19% Similarity=0.395 Sum_probs=28.7
Q ss_pred CCCCEEEEEECCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 853005657249969999949999867899998469
Q 000746 655 PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGE 690 (1303)
Q Consensus 655 ~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llge 690 (1303)
+.|++..-=+.+|+++.|.|++|+|||+++.-+.--
T Consensus 23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~ 58 (277)
T d1cr2a_ 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (277)
T ss_dssp TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 668887469789808999947999799999999972
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=92.50 E-value=0.04 Score=28.11 Aligned_cols=28 Identities=18% Similarity=0.239 Sum_probs=23.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4996999994999986789999846999
Q 000746 665 PVGSLVAIVGGTGEGKTSLVSAMLGELP 692 (1303)
Q Consensus 665 ~~G~~~~ivG~~GsGKSTLl~~llge~~ 692 (1303)
++.-.++++|+.|+|||||++.+.+...
T Consensus 11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~ 38 (186)
T d1f6ba_ 11 KKTGKLVFLGLDNAGKTTLLHMLKDDRL 38 (186)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC--
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 7777899999999898999999967887
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=92.49 E-value=0.047 Score=27.63 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=24.1
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 249969999949999867899998469
Q 000746 664 IPVGSLVAIVGGTGEGKTSLVSAMLGE 690 (1303)
Q Consensus 664 i~~G~~~~ivG~~GsGKSTLl~~llge 690 (1303)
+++|+++.|.|++|||||+|..-++-.
T Consensus 33 lp~G~~~li~G~pGsGKT~~~lq~~~~ 59 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAHTLAVM 59 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 558879999858989889999999998
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.48 E-value=0.053 Score=27.25 Aligned_cols=51 Identities=14% Similarity=0.106 Sum_probs=32.9
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCEEEEECCCCCC
Q ss_conf 7249969999949999867899998469999999669994917998168656
Q 000746 663 DIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISWI 714 (1303)
Q Consensus 663 ~i~~G~~~~ivG~~GsGKSTLl~~llge~~~~~g~~~~~~~~iayv~Q~pwl 714 (1303)
=+++|+++.|.|++|||||++...++........ .......+.|...+.-.
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 83 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGA-GGYPGGKIIFIDTENTF 83 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBT-TTBCCCEEEEEESSSCC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHH-CCCCCCEEEEECHHHHH
T ss_conf 9768979999889988788999999999974443-16666248874017777
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.46 E-value=0.043 Score=27.90 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999499998678999984699
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge~ 691 (1303)
.++|+|++|+|||||++.|.|.-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999988999999996799
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=92.40 E-value=0.046 Score=27.69 Aligned_cols=123 Identities=15% Similarity=0.154 Sum_probs=62.1
Q ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCEEEEECCCCCCCCCCHHHHHCCCCCCCHHHHHHHH
Q ss_conf 05657249969999949999867899998469999999669994917998168656665588997049999956589999
Q 000746 659 NINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTV 738 (1303)
Q Consensus 659 ~i~l~i~~G~~~~ivG~~GsGKSTLl~~llge~~~~~g~~~~~~~~iayv~Q~pwl~~~TireNI~~g~~~d~~~y~~vi 738 (1303)
|.=+.+.+|+..+|.|+.|+|||+|+..+..-........+.. ++.+.+.+ +| +-
T Consensus 35 D~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~~~~~~~v~~---~~~iger~-------~e---------------v~ 89 (289)
T d1xpua3 35 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLM---VLLIDERP-------EE---------------VT 89 (289)
T ss_dssp HHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHHHHHCTTSEEE---EEEEEECH-------HH---------------HH
T ss_pred EECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE---EEEECEEH-------HH---------------HH
T ss_conf 4125645787556867999887899999999775158976999---87611008-------78---------------87
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEEECCEEE
Q ss_conf 89823888510999997311489887766899999999999989986750998799992499940014979999398799
Q 000746 739 DVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFNSCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIK 818 (1303)
Q Consensus 739 ~ac~L~~di~~lp~gd~T~ige~G~~LSGGQkqRiaLARAi~~~~i~~~l~~~TvilvTH~~~~l~~aD~ii~l~~G~i~ 818 (1303)
+. .+. ..+.+=..-.+-+.+.+-+.+.+-.-.-+-+.+ .|+-|+++-.++.-...|-+-+-...|+.-
T Consensus 90 ~~---~~~-------~~~~vv~~t~d~~~~~r~~~~~~a~~iAEyfrd--~G~dVLli~Dsltr~A~A~rEis~~~ge~p 157 (289)
T d1xpua3 90 EM---QRL-------VKGEVVASTFDEPASRHVQVAEMVIEKAKRLVE--HKKDVIILLDSITRLARAYNTVVPASGKVL 157 (289)
T ss_dssp HH---HHH-------CSSEEEEEETTSCHHHHHHHHHHHHHHHHHHHT--TTCEEEEEESCHHHHHHHHHHHSCC---CB
T ss_pred HH---HHH-------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH--HCCCCEEECCCHHHHHHHHHHHHHHCCCCC
T ss_conf 67---754-------050799605888356789999999999999998--265751551768999999998776326887
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.33 E-value=0.053 Score=27.21 Aligned_cols=29 Identities=31% Similarity=0.447 Sum_probs=25.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 49969999949999867899998469999
Q 000746 665 PVGSLVAIVGGTGEGKTSLVSAMLGELPP 693 (1303)
Q Consensus 665 ~~G~~~~ivG~~GsGKSTLl~~llge~~~ 693 (1303)
.+|.+++|-|+.||||||+.+.|...+..
T Consensus 1 ~kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 1 GRGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 97689999899888699999999999971
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=92.30 E-value=0.059 Score=26.90 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999499998678999984699
Q 000746 670 VAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 670 ~~ivG~~GsGKSTLl~~llge~ 691 (1303)
++|+|++.+|||||+++|+|.-
T Consensus 8 IaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCHHHHHHHHHHHC
T ss_conf 9999077870999999999743
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=92.30 E-value=0.058 Score=26.94 Aligned_cols=27 Identities=30% Similarity=0.533 Sum_probs=23.4
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 724996999994999986789999846
Q 000746 663 DIPVGSLVAIVGGTGEGKTSLVSAMLG 689 (1303)
Q Consensus 663 ~i~~G~~~~ivG~~GsGKSTLl~~llg 689 (1303)
=+++|+++.|.|++|+|||+|..-++.
T Consensus 22 Gi~~G~~~~I~G~~G~GKT~la~~~~~ 48 (242)
T d1tf7a1 22 GLPIGRSTLVSGTSGTGKTLFSIQFLY 48 (242)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 996983999994799999999999999
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.22 E-value=0.033 Score=28.69 Aligned_cols=27 Identities=22% Similarity=0.479 Sum_probs=23.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 499699999499998678999984699
Q 000746 665 PVGSLVAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 665 ~~G~~~~ivG~~GsGKSTLl~~llge~ 691 (1303)
++-..++|+||.||||||+.+.|...+
T Consensus 6 ~~~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 6 DQVSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 997289998999999899999999985
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=92.22 E-value=0.057 Score=27.03 Aligned_cols=30 Identities=23% Similarity=0.321 Sum_probs=25.3
Q ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 572499699999499998678999984699
Q 000746 662 LDIPVGSLVAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 662 l~i~~G~~~~ivG~~GsGKSTLl~~llge~ 691 (1303)
+.-++|.++.++|.+||||||+.+.|...+
T Consensus 19 ~~~~kg~vIwltGlsGsGKTTia~~L~~~l 48 (208)
T d1m7ga_ 19 LRNQRGLTIWLTGLSASGKSTLAVELEHQL 48 (208)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 858998699998999999899999999887
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=92.01 E-value=0.052 Score=27.29 Aligned_cols=15 Identities=27% Similarity=0.293 Sum_probs=5.9
Q ss_pred ECCCCEEEEE-CCCCC
Q ss_conf 2499699999-49999
Q 000746 664 IPVGSLVAIV-GGTGE 678 (1303)
Q Consensus 664 i~~G~~~~iv-G~~Gs 678 (1303)
..+|..++++ ....|
T Consensus 79 ~~~g~~vavlavDpss 94 (327)
T d2p67a1 79 IREGLKVAVIAVDPSS 94 (327)
T ss_dssp HHTTCCEEEEEECCC-
T ss_pred HHCCCCEEEECCCCCE
T ss_conf 7569833220377761
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.94 E-value=0.054 Score=27.18 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=22.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6999994999986789999846999
Q 000746 668 SLVAIVGGTGEGKTSLVSAMLGELP 692 (1303)
Q Consensus 668 ~~~~ivG~~GsGKSTLl~~llge~~ 692 (1303)
....+.||+|+||||+++++..++.
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 4499987999988899999999987
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=91.94 E-value=0.057 Score=27.03 Aligned_cols=27 Identities=30% Similarity=0.348 Sum_probs=22.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 996999994999986789999846999
Q 000746 666 VGSLVAIVGGTGEGKTSLVSAMLGELP 692 (1303)
Q Consensus 666 ~G~~~~ivG~~GsGKSTLl~~llge~~ 692 (1303)
+.-.++|+|+.|+|||||+..+...+.
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~~~~ 76 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGSLLT 76 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 815986117998889999999999876
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.93 E-value=0.13 Score=24.51 Aligned_cols=24 Identities=13% Similarity=0.157 Sum_probs=19.4
Q ss_pred CCCEEEEEECCCCCCCCCCEEEEE
Q ss_conf 998799992499940014979999
Q 000746 789 RGKTRILVTNQLHFLPHVDRIILV 812 (1303)
Q Consensus 789 ~~~TvilvTH~~~~l~~aD~ii~l 812 (1303)
.+.-+|++||+...+..||+++.+
T Consensus 385 ~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 385 PDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp TTBEEEEECSCHHHHTTCSEEEEE
T ss_pred CCCEEEEEECCHHHHHHCCCEEEE
T ss_conf 998899995878999736617999
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=91.83 E-value=0.054 Score=27.18 Aligned_cols=23 Identities=22% Similarity=0.249 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999499998678999984699
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge~ 691 (1303)
.++++|+.|+|||||++.+.+.-
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999996598
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=91.82 E-value=0.037 Score=28.34 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999499998678999984699
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge~ 691 (1303)
-++|+|++++|||||+++|.|.-
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~~ 25 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSAK 25 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69998999987999999996899
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=91.81 E-value=0.067 Score=26.49 Aligned_cols=22 Identities=41% Similarity=0.807 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999949999867899998469
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGE 690 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge 690 (1303)
.++++|.+++|||||+++|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=91.73 E-value=0.067 Score=26.52 Aligned_cols=28 Identities=25% Similarity=0.341 Sum_probs=25.1
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 2499699999499998678999984699
Q 000746 664 IPVGSLVAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 664 i~~G~~~~ivG~~GsGKSTLl~~llge~ 691 (1303)
+++|+++.|.|++|+|||++..-+.-..
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 6288599999179999899999999999
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=91.63 E-value=0.059 Score=26.92 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999499998678999984699
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge~ 691 (1303)
.++++|..|+|||||++.+.+.-
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989999999996798
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=91.60 E-value=0.062 Score=26.76 Aligned_cols=23 Identities=26% Similarity=0.580 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999499998678999984699
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge~ 691 (1303)
.++|+|...+|||||+++|+|+-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred EEEEEECCCCCHHHHHHHHHCCC
T ss_conf 59998189897999999996899
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=91.59 E-value=0.064 Score=26.65 Aligned_cols=20 Identities=35% Similarity=0.760 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999499998678999984
Q 000746 669 LVAIVGGTGEGKTSLVSAML 688 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~ll 688 (1303)
+++|+|+.||||||+.+.+-
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99988888788999999999
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=91.52 E-value=0.042 Score=28.00 Aligned_cols=22 Identities=41% Similarity=0.548 Sum_probs=20.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999499998678999984699
Q 000746 670 VAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 670 ~~ivG~~GsGKSTLl~~llge~ 691 (1303)
++|+|++++|||||++.|.|.-
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999998999999996899
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=91.42 E-value=0.058 Score=26.94 Aligned_cols=24 Identities=8% Similarity=0.032 Sum_probs=12.1
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 249969999949999867899998
Q 000746 664 IPVGSLVAIVGGTGEGKTSLVSAM 687 (1303)
Q Consensus 664 i~~G~~~~ivG~~GsGKSTLl~~l 687 (1303)
...|..++++-.-.+-+-...+.+
T Consensus 61 ~~~g~~v~~~s~E~~~~~~~~r~~ 84 (277)
T d1cr2a_ 61 TAMGKKVGLAMLEESVEETAEDLI 84 (277)
T ss_dssp HTSCCCEEEEESSSCHHHHHHHHH
T ss_pred HHCCCCEEEEEECCCHHHHHHHHH
T ss_conf 533663457640111135776999
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=91.39 E-value=0.067 Score=26.52 Aligned_cols=20 Identities=25% Similarity=0.647 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999499998678999984
Q 000746 669 LVAIVGGTGEGKTSLVSAML 688 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~ll 688 (1303)
+++|+|+.||||||+.+.|-
T Consensus 5 IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99998988778999999999
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.37 E-value=0.075 Score=26.15 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=21.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6999994999986789999846999
Q 000746 668 SLVAIVGGTGEGKTSLVSAMLGELP 692 (1303)
Q Consensus 668 ~~~~ivG~~GsGKSTLl~~llge~~ 692 (1303)
.+++++|.+||||||+.+.|...+.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8999989999999999999999997
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=91.24 E-value=0.062 Score=26.73 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999499998678999984699
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge~ 691 (1303)
.++|.||.||||||+.+.|...+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998899999899999999987
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=91.22 E-value=0.032 Score=28.83 Aligned_cols=34 Identities=26% Similarity=0.470 Sum_probs=28.7
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 7249969999949999867899998469999999
Q 000746 663 DIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKD 696 (1303)
Q Consensus 663 ~i~~G~~~~ivG~~GsGKSTLl~~llge~~~~~g 696 (1303)
=+++|.++.+.|++||||||++..+........+
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~ 83 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK 83 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 9667358998057774789999999999870898
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=91.20 E-value=0.08 Score=25.96 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=22.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4996999994999986789999846999
Q 000746 665 PVGSLVAIVGGTGEGKTSLVSAMLGELP 692 (1303)
Q Consensus 665 ~~G~~~~ivG~~GsGKSTLl~~llge~~ 692 (1303)
+++ -+.++||+|||||.|.+++..++.
T Consensus 48 ~~~-~iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 48 TPK-NILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CCC-CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCC-EEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 986-699989999888899999862132
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=91.06 E-value=0.088 Score=25.63 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=21.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999949999867899998469999
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGELPP 693 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge~~~ 693 (1303)
.++++|+.|+|||||++.+.++...
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~~~ 28 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGEDVD 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCCCS
T ss_pred EEEEECCCCCCHHHHHHHHCCCCCC
T ss_conf 9999999998999999998089987
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.02 E-value=0.062 Score=26.73 Aligned_cols=45 Identities=31% Similarity=0.379 Sum_probs=29.0
Q ss_pred EEEEEEECCCC-CCCCEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 93389728999-8530056572499699999499998678999984699
Q 000746 644 KNGNFSWDSKS-PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 644 ~~~~f~~~~~~-~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llge~ 691 (1303)
++..+....+. ..|+.++= |=.++.|+||.++|||+|++.++|..
T Consensus 11 ~~~~l~~~~e~l~~l~~~~~---~v~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 11 TNGRLMANPEALKILSAITQ---PMVVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp ETTEEEECHHHHHHHHTCCS---BEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CCCEEEECHHHHHHHHCCCC---CEEEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99949989999999970799---87999988999997999999980998
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=90.96 E-value=0.094 Score=25.44 Aligned_cols=28 Identities=21% Similarity=0.348 Sum_probs=23.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4996999994999986789999846999
Q 000746 665 PVGSLVAIVGGTGEGKTSLVSAMLGELP 692 (1303)
Q Consensus 665 ~~G~~~~ivG~~GsGKSTLl~~llge~~ 692 (1303)
..+..+.|.||.|+|||||++.++.+..
T Consensus 27 ~~~~~i~i~G~~G~GKTsLl~~~~~~~~ 54 (283)
T d2fnaa2 27 LRAPITLVLGLRRTGKSSIIKIGINELN 54 (283)
T ss_dssp TCSSEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 0598799986999829999999999779
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.77 E-value=0.084 Score=25.80 Aligned_cols=24 Identities=33% Similarity=0.324 Sum_probs=20.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 699999499998678999984699
Q 000746 668 SLVAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 668 ~~~~ivG~~GsGKSTLl~~llge~ 691 (1303)
+.++|+|+.|+|||||++.+++.-
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 989999999989899999998099
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=90.74 E-value=0.048 Score=27.55 Aligned_cols=40 Identities=8% Similarity=0.224 Sum_probs=30.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCEEEEECCCCCC
Q ss_conf 69999949999867899998469999999669994917998168656
Q 000746 668 SLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISWI 714 (1303)
Q Consensus 668 ~~~~ivG~~GsGKSTLl~~llge~~~~~g~~~~~~~~iayv~Q~pwl 714 (1303)
-+++|.|++||||||+.+.+...+.. +| -+.+.++|+.+-
T Consensus 5 pIIgIaG~SGSGKTTva~~l~~i~~~-~~------v~~~iI~~Dsfy 44 (288)
T d1a7ja_ 5 PIISVTGSSGAGTSTVKHTFDQIFRR-EG------VKAVSIEGDAFH 44 (288)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHH-HT------CCEEEEEGGGGB
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH-CC------CCEEEEECCCCC
T ss_conf 89999899978099999999999715-69------976999477787
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=90.71 E-value=0.089 Score=25.62 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999994999986789999846999
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGELP 692 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge~~ 692 (1303)
.++|-||+||||||..+.|...+.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789998798999999999969
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.69 E-value=0.095 Score=25.40 Aligned_cols=23 Identities=26% Similarity=0.602 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999499998678999984699
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge~ 691 (1303)
.++|.||.||||||..+.|...+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99997999999899999999986
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.67 E-value=0.078 Score=26.04 Aligned_cols=23 Identities=35% Similarity=0.687 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999499998678999984699
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge~ 691 (1303)
.++|+|...||||||+++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.67 E-value=0.086 Score=25.70 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999994999986789999846999
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGELP 692 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge~~ 692 (1303)
+++++|+.|+|||||++.+.+.-.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~~ 25 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDRL 25 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899999999999999999958998
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=90.62 E-value=0.065 Score=26.58 Aligned_cols=29 Identities=31% Similarity=0.350 Sum_probs=25.5
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 24996999994999986789999846999
Q 000746 664 IPVGSLVAIVGGTGEGKTSLVSAMLGELP 692 (1303)
Q Consensus 664 i~~G~~~~ivG~~GsGKSTLl~~llge~~ 692 (1303)
++++..+.+.||.|+|||++.+++.+++.
T Consensus 151 ~~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 151 IPKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99767699989999888999999999859
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=90.61 E-value=0.051 Score=27.37 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=22.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 96999994999986789999846999
Q 000746 667 GSLVAIVGGTGEGKTSLVSAMLGELP 692 (1303)
Q Consensus 667 G~~~~ivG~~GsGKSTLl~~llge~~ 692 (1303)
.-.++++|++++|||||+++|.|.-.
T Consensus 16 ~~~I~lvG~~NvGKSSL~n~L~~~~~ 41 (188)
T d1puia_ 16 GIEVAFAGRSNAGKSSALNTLTNQKS 41 (188)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC--
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 97899988999989999999858985
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=90.52 E-value=0.069 Score=26.43 Aligned_cols=28 Identities=39% Similarity=0.510 Sum_probs=23.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4996999994999986789999846999
Q 000746 665 PVGSLVAIVGGTGEGKTSLVSAMLGELP 692 (1303)
Q Consensus 665 ~~G~~~~ivG~~GsGKSTLl~~llge~~ 692 (1303)
+...-+.+.||.|||||++.+++..++.
T Consensus 43 ~~~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 43 KIPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHCC
T ss_conf 9888678668998882289999999829
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=90.51 E-value=0.086 Score=25.74 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=22.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 69999949999867899998469999
Q 000746 668 SLVAIVGGTGEGKTSLVSAMLGELPP 693 (1303)
Q Consensus 668 ~~~~ivG~~GsGKSTLl~~llge~~~ 693 (1303)
++++|.|+.||||||+.+.|...+..
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~~ 27 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 19999898998989999999999987
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=90.46 E-value=0.1 Score=25.24 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999499998678999984699
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge~ 691 (1303)
.++|+||.||||||+.+.|...+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999899999999987
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=90.45 E-value=0.079 Score=25.98 Aligned_cols=32 Identities=31% Similarity=0.434 Sum_probs=27.7
Q ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 57249969999949999867899998469999
Q 000746 662 LDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP 693 (1303)
Q Consensus 662 l~i~~G~~~~ivG~~GsGKSTLl~~llge~~~ 693 (1303)
...++|.++.+.|+-|+|||||.+.++..+..
T Consensus 28 ~~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 28 LHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp HCCSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 15799829999668776588999998764223
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=90.41 E-value=0.081 Score=25.91 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=20.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 699999499998678999984699
Q 000746 668 SLVAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 668 ~~~~ivG~~GsGKSTLl~~llge~ 691 (1303)
+.+.++|+.||||||+.+.+...+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 988998899998899999999994
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.40 E-value=0.08 Score=25.96 Aligned_cols=30 Identities=30% Similarity=0.315 Sum_probs=25.0
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 724996999994999986789999846999
Q 000746 663 DIPVGSLVAIVGGTGEGKTSLVSAMLGELP 692 (1303)
Q Consensus 663 ~i~~G~~~~ivG~~GsGKSTLl~~llge~~ 692 (1303)
.+++..-+.+.||.|||||++.+++.+++.
T Consensus 37 g~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 37 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 999887578878998763047788787718
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=90.37 E-value=0.091 Score=25.54 Aligned_cols=23 Identities=30% Similarity=0.625 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999499998678999984699
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge~ 691 (1303)
.++|+|.+.+|||||+.+|++..
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~~ 29 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGSA 29 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHC
T ss_conf 79999699854999999998236
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=90.21 E-value=0.12 Score=24.77 Aligned_cols=27 Identities=26% Similarity=0.215 Sum_probs=22.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 499699999499998678999984699
Q 000746 665 PVGSLVAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 665 ~~G~~~~ivG~~GsGKSTLl~~llge~ 691 (1303)
++.=.++++|..|||||||++.+.+.-
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 985799999999989899999996688
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=90.19 E-value=0.11 Score=24.97 Aligned_cols=23 Identities=17% Similarity=0.390 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999499998678999984699
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge~ 691 (1303)
.++|+||.||||||+.+.|...+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999987
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=90.11 E-value=0.11 Score=24.99 Aligned_cols=24 Identities=46% Similarity=0.566 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999994999986789999846999
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGELP 692 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge~~ 692 (1303)
-+.+.||.|||||++.+++.+++.
T Consensus 44 giLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 488766898883599999998739
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=90.06 E-value=0.13 Score=24.37 Aligned_cols=49 Identities=24% Similarity=0.440 Sum_probs=29.6
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCC---CCCCCEEEECCEEEEECCCC
Q ss_conf 24996999994999986789999846999---99996699949179981686
Q 000746 664 IPVGSLVAIVGGTGEGKTSLVSAMLGELP---PLKDASVVIRGTVAYVPQIS 712 (1303)
Q Consensus 664 i~~G~~~~ivG~~GsGKSTLl~~llge~~---~~~g~~~~~~~~iayv~Q~p 712 (1303)
+.+|+++.|.|+.|+|||+|+..+.--+. +.-+....-.+.+.|+.-+.
T Consensus 26 ~~pg~~~~i~G~~G~GKS~l~l~la~~ia~g~~~~~~~~~~~~~vl~~~~E~ 77 (274)
T d1nlfa_ 26 MVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAED 77 (274)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSS
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCC
T ss_conf 5589589999289998999999999999769972111235787368985123
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=90.04 E-value=0.1 Score=25.26 Aligned_cols=22 Identities=32% Similarity=0.625 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999499998678999984699
Q 000746 670 VAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 670 ~~ivG~~GsGKSTLl~~llge~ 691 (1303)
++++|+.||||||+.+.|...+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998899999999983
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=90.02 E-value=0.11 Score=24.87 Aligned_cols=24 Identities=38% Similarity=0.591 Sum_probs=21.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999994999986789999846999
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGELP 692 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge~~ 692 (1303)
+++|.||.||||+|..+.|...+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899779998898999999999969
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=89.93 E-value=0.11 Score=24.82 Aligned_cols=20 Identities=40% Similarity=0.820 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999499998678999984
Q 000746 669 LVAIVGGTGEGKTSLVSAML 688 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~ll 688 (1303)
+++|+|..||||||..+.+-
T Consensus 5 iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99978988688999999999
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=89.81 E-value=0.059 Score=26.92 Aligned_cols=24 Identities=33% Similarity=0.376 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999994999986789999846999
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGELP 692 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge~~ 692 (1303)
...+.||+|+||||+++++..++.
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l~ 70 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALARELF 70 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 699978999748799999999987
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.79 E-value=0.12 Score=24.73 Aligned_cols=24 Identities=42% Similarity=0.670 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999994999986789999846999
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGELP 692 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge~~ 692 (1303)
+++|-|..||||||+++.|...+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899989987899999999999998
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=89.64 E-value=0.064 Score=26.66 Aligned_cols=25 Identities=36% Similarity=0.510 Sum_probs=22.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999949999867899998469999
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGELPP 693 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge~~~ 693 (1303)
-+.+.||.|+||||+.+++..++..
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~ 61 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQT 61 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 4898799997388999999850388
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.46 E-value=0.12 Score=24.77 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999499998678999984699
Q 000746 670 VAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 670 ~~ivG~~GsGKSTLl~~llge~ 691 (1303)
++++|+.||||||+.+.|...+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8998899998899999999984
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.33 E-value=0.14 Score=24.13 Aligned_cols=33 Identities=24% Similarity=0.542 Sum_probs=27.6
Q ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 056572499699999499998678999984699
Q 000746 659 NINLDIPVGSLVAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 659 ~i~l~i~~G~~~~ivG~~GsGKSTLl~~llge~ 691 (1303)
|.-+.+.+|+..+|.|+.|+|||+|+.-+..-.
T Consensus 60 D~l~pigkGQr~~If~~~g~GKt~l~~~i~~~~ 92 (276)
T d2jdid3 60 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV 92 (276)
T ss_dssp HHHSCEETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 102563678877766799989899999999988
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=89.29 E-value=0.15 Score=24.06 Aligned_cols=41 Identities=22% Similarity=0.324 Sum_probs=29.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEC----CEEEEECCCC
Q ss_conf 9999949999867899998469999999669994----9179981686
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR----GTVAYVPQIS 712 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge~~~~~g~~~~~~----~~iayv~Q~p 712 (1303)
=+.++||+|||||-|.+.|.++++. -.+... ...+||..+.
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~V---PFv~~daT~fTeaGYvG~DV 95 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANA---PFIKVEATKFTEVGYVGKEV 95 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTC---CEEEEEGGGGC----CCCCT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCC---CEEEEECCEEEECCEEECCH
T ss_conf 4799899998899999999987389---88986255114111110444
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=89.23 E-value=0.16 Score=23.69 Aligned_cols=41 Identities=24% Similarity=0.340 Sum_probs=27.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCEEEEECCCC
Q ss_conf 499699999499998678999984699999996699949179981686
Q 000746 665 PVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQIS 712 (1303)
Q Consensus 665 ~~G~~~~ivG~~GsGKSTLl~~llge~~~~~g~~~~~~~~iayv~Q~p 712 (1303)
+++..++++||+|+||||.+--|...+. ..|. +++.+.-+.
T Consensus 4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~-~~g~------kV~lit~Dt 44 (207)
T d1okkd2 4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQ-NLGK------KVMFCAGDT 44 (207)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHH-TTTC------CEEEECCCC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH-HCCC------CEEEEEECC
T ss_conf 9977999989999988999999999999-7799------079998136
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=89.21 E-value=0.13 Score=24.41 Aligned_cols=23 Identities=13% Similarity=0.304 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999499998678999984699
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge~ 691 (1303)
.++++||.||||||..+.|...+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998799999899999999986
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=89.20 E-value=0.18 Score=23.45 Aligned_cols=28 Identities=18% Similarity=0.214 Sum_probs=23.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9969999949999867899998469999
Q 000746 666 VGSLVAIVGGTGEGKTSLVSAMLGELPP 693 (1303)
Q Consensus 666 ~G~~~~ivG~~GsGKSTLl~~llge~~~ 693 (1303)
++-.++|+|..-+|||||+++|.|.-..
T Consensus 111 ~~~~v~vvG~PNvGKSsliN~L~~~~~~ 138 (273)
T d1puja_ 111 RAIRALIIGIPNVGKSTLINRLAKKNIA 138 (273)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC
T ss_pred CCEEEEEEECCCCCHHHHHHHHHCCCEE
T ss_conf 7527899866754435554254266158
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.13 E-value=0.14 Score=24.21 Aligned_cols=23 Identities=39% Similarity=0.596 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999499998678999984699
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge~ 691 (1303)
+++++|+.|+|||||++.+.+.-
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~~ 26 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVNDK 26 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999969899999997098
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.13 E-value=0.069 Score=26.40 Aligned_cols=22 Identities=41% Similarity=0.554 Sum_probs=20.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999499998678999984699
Q 000746 670 VAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 670 ~~ivG~~GsGKSTLl~~llge~ 691 (1303)
..+.||+|+||||+++++..++
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998499999999997
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=89.12 E-value=0.074 Score=26.18 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=21.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99994999986789999846999
Q 000746 670 VAIVGGTGEGKTSLVSAMLGELP 692 (1303)
Q Consensus 670 ~~ivG~~GsGKSTLl~~llge~~ 692 (1303)
+.+.||.|+||||+.+++.+++.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89889799878889999999849
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.10 E-value=0.049 Score=27.46 Aligned_cols=44 Identities=18% Similarity=0.334 Sum_probs=32.1
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCEEEEECCCCC
Q ss_conf 724996999994999986789999846999999966999491799816865
Q 000746 663 DIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISW 713 (1303)
Q Consensus 663 ~i~~G~~~~ivG~~GsGKSTLl~~llge~~~~~g~~~~~~~~iayv~Q~pw 713 (1303)
=++.|.++.+.|+.|||||+++..+........ + .+.|+.-+-.
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g-~------~~vyIDtE~~ 99 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAG-G------VAAFIDAEHA 99 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTT-C------EEEEEESSCC
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCC-C------EEEEEECCCC
T ss_conf 866633699964887488999999999875489-8------8999989766
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=89.09 E-value=0.19 Score=23.31 Aligned_cols=29 Identities=17% Similarity=0.210 Sum_probs=24.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 96999994999986789999846999999
Q 000746 667 GSLVAIVGGTGEGKTSLVSAMLGELPPLK 695 (1303)
Q Consensus 667 G~~~~ivG~~GsGKSTLl~~llge~~~~~ 695 (1303)
...+.|.||.|+|||++++.+...+....
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~~~ 71 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKDKT 71 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTTSC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHCCC
T ss_conf 88168889899989999999999975446
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.09 E-value=0.13 Score=24.39 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999949999867899998469
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGE 690 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge 690 (1303)
+++++|..|+|||||++.+.+.
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999991989999999739
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=89.05 E-value=0.14 Score=24.17 Aligned_cols=23 Identities=35% Similarity=0.596 Sum_probs=20.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99994999986789999846999
Q 000746 670 VAIVGGTGEGKTSLVSAMLGELP 692 (1303)
Q Consensus 670 ~~ivG~~GsGKSTLl~~llge~~ 692 (1303)
++|+|.+.+|||||+.+|+|...
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~~ 30 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVWT 30 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCCC
T ss_pred EEEEECCCCCHHHHHHHHHHHHH
T ss_conf 99993458849999999970344
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.89 E-value=0.15 Score=23.89 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999499998678999984699
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge~ 691 (1303)
.++|.||.||||||+.+.|...+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999799999999998
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=88.81 E-value=0.15 Score=23.99 Aligned_cols=46 Identities=17% Similarity=0.211 Sum_probs=28.2
Q ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCEEEEECCCC
Q ss_conf 56572499699999499998678999984699999996699949179981686
Q 000746 660 INLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQIS 712 (1303)
Q Consensus 660 i~l~i~~G~~~~ivG~~GsGKSTLl~~llge~~~~~g~~~~~~~~iayv~Q~p 712 (1303)
+|+.-++...++++||+|+||||.+--|.-.+. .+| .+++.+.-+.
T Consensus 4 l~~~~~~p~vi~lvGptGvGKTTTiAKLAa~~~-~~~------~kV~lit~Dt 49 (213)
T d1vmaa2 4 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV-DEG------KSVVLAAADT 49 (213)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH-HTT------CCEEEEEECT
T ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH-HCC------CCEEEEEECC
T ss_conf 767999998999989999988999999999999-779------9069996013
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.73 E-value=0.14 Score=24.10 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999499998678999984699
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge~ 691 (1303)
+++++|+.|+|||||++.+++.-
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~~ 28 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRNE 28 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999909899999998299
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=88.72 E-value=0.15 Score=23.91 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=21.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9699999499998678999984699
Q 000746 667 GSLVAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 667 G~~~~ivG~~GsGKSTLl~~llge~ 691 (1303)
.-.++++|+.|+|||||++.+.+.-
T Consensus 16 ~~kI~vvG~~~vGKSsLi~~l~~~~ 40 (176)
T d1fzqa_ 16 EVRILLLGLDNAGKTTLLKQLASED 40 (176)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 7799999999989999999996487
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.60 E-value=0.16 Score=23.71 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999994999986789999846999
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGELP 692 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge~~ 692 (1303)
-+.+.||.|||||++.+++..+..
T Consensus 40 giLL~GppGtGKT~l~~ala~~~~ 63 (258)
T d1e32a2 40 GILLYGPPGTGKTLIARAVANETG 63 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 468766998883089999998748
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.48 E-value=0.18 Score=23.32 Aligned_cols=22 Identities=41% Similarity=0.564 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999949999867899998469
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGE 690 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge 690 (1303)
+++++|..|+|||||++.+++.
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998997989999999709
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.37 E-value=0.16 Score=23.75 Aligned_cols=22 Identities=41% Similarity=0.655 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999949999867899998469
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGE 690 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge 690 (1303)
+++++|..|+|||||++.+.+.
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~~ 25 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVNK 25 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999719
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.37 E-value=0.18 Score=23.48 Aligned_cols=23 Identities=17% Similarity=0.417 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999499998678999984699
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge~ 691 (1303)
.+++.||.||||||+.+.|...+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998999999899999999996
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=88.21 E-value=0.11 Score=24.87 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=21.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6999994999986789999846999
Q 000746 668 SLVAIVGGTGEGKTSLVSAMLGELP 692 (1303)
Q Consensus 668 ~~~~ivG~~GsGKSTLl~~llge~~ 692 (1303)
.-+.+.||.|||||++.+++..+..
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~~~ 65 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEESN 65 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 0799889699988999999862010
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.12 E-value=0.2 Score=23.03 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999499998678999984699
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge~ 691 (1303)
.++++|+.|+|||||++.+.+.-
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~~ 29 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDNK 29 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999919899999996199
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.08 E-value=0.17 Score=23.62 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999499998678999984699
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge~ 691 (1303)
+++++|+.|+|||||++.+++.-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~~ 27 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDKR 27 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999939999999996299
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.06 E-value=0.17 Score=23.57 Aligned_cols=23 Identities=22% Similarity=0.543 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999499998678999984699
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge~ 691 (1303)
+++++|..|+|||||++.+++.-
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~~ 26 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVEDK 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999967899999998688
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.96 E-value=0.17 Score=23.55 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=22.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 69999949999867899998469999
Q 000746 668 SLVAIVGGTGEGKTSLVSAMLGELPP 693 (1303)
Q Consensus 668 ~~~~ivG~~GsGKSTLl~~llge~~~ 693 (1303)
++++|-|+.||||||+++.|...+..
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~~ 28 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 19999899888599999999998730
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.93 E-value=0.19 Score=23.29 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999499998678999984699
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge~ 691 (1303)
+++++|..|+|||||++.+++.-
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~~ 27 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989939999999997199
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=87.91 E-value=0.24 Score=22.46 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=22.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99699999499998678999984699
Q 000746 666 VGSLVAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 666 ~G~~~~ivG~~GsGKSTLl~~llge~ 691 (1303)
+.-.++|+||.||||||+.+.|...+
T Consensus 5 r~mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 5 RLLRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHB
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 62169998899998799999999997
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=87.82 E-value=0.14 Score=24.16 Aligned_cols=13 Identities=23% Similarity=0.445 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 6899999999999
Q 000746 767 GGQKQRVSMARAV 779 (1303)
Q Consensus 767 GGQkqRiaLARAi 779 (1303)
|+.-.|-...|.+
T Consensus 269 g~d~~~eg~~~~l 281 (443)
T d1g41a_ 269 GADVSREGVQRDL 281 (443)
T ss_dssp SSHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHH
T ss_conf 8774300134544
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.72 E-value=0.25 Score=22.35 Aligned_cols=23 Identities=26% Similarity=0.508 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999499998678999984699
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge~ 691 (1303)
.++++|..|+|||||++.+.+.-
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~~ 27 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999979989999999998098
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=87.72 E-value=0.25 Score=22.38 Aligned_cols=12 Identities=8% Similarity=0.229 Sum_probs=8.7
Q ss_pred CCCEEEEEECCC
Q ss_conf 998799992499
Q 000746 789 RGKTRILVTNQL 800 (1303)
Q Consensus 789 ~~~TvilvTH~~ 800 (1303)
.+++++++.|.-
T Consensus 169 ~~~~vi~v~H~~ 180 (274)
T d1nlfa_ 169 TGCSIVFLHHAS 180 (274)
T ss_dssp HCCEEEEEEEC-
T ss_pred CCCCEEHHHHCC
T ss_conf 797540131005
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.71 E-value=0.33 Score=21.54 Aligned_cols=25 Identities=28% Similarity=0.502 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999949999867899998469999
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGELPP 693 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge~~~ 693 (1303)
+++++|..|+|||||++.+.+....
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~~ 29 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHDS 29 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCCT
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 9999998992999999999728677
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.61 E-value=0.19 Score=23.29 Aligned_cols=21 Identities=24% Similarity=0.426 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999994999986789999846
Q 000746 669 LVAIVGGTGEGKTSLVSAMLG 689 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llg 689 (1303)
+++++|+.|+|||||++.+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999982
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.55 E-value=0.24 Score=22.43 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999994999986789999846999
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGELP 692 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge~~ 692 (1303)
+++++|..|+|||||++.+.+.-.
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999989899399999999818856
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=87.29 E-value=0.21 Score=22.90 Aligned_cols=24 Identities=17% Similarity=0.338 Sum_probs=20.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 699999499998678999984699
Q 000746 668 SLVAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 668 ~~~~ivG~~GsGKSTLl~~llge~ 691 (1303)
.+++|+|+.||||||+.+.|...+
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e~~ 25 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMSNY 25 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 899997999988999999999868
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=87.22 E-value=0.19 Score=23.28 Aligned_cols=33 Identities=18% Similarity=0.288 Sum_probs=26.4
Q ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 056572499699999499998678999984699
Q 000746 659 NINLDIPVGSLVAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 659 ~i~l~i~~G~~~~ivG~~GsGKSTLl~~llge~ 691 (1303)
|.=+.+.+|+...|.|+.|+|||+|+..+..-.
T Consensus 59 D~l~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~ 91 (276)
T d1fx0a3 59 DAMIPVGRGQRELIIGDRQTGKTAVATDTILNQ 91 (276)
T ss_dssp TTTSCCBTTCBCBEEESSSSSHHHHHHHHHHTC
T ss_pred ECCCCCCCCCEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 501454677667600677888579999977654
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.15 E-value=0.19 Score=23.17 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=20.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 69999949999867899998469
Q 000746 668 SLVAIVGGTGEGKTSLVSAMLGE 690 (1303)
Q Consensus 668 ~~~~ivG~~GsGKSTLl~~llge 690 (1303)
-.++++|+.|+|||||++.+.+.
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~~ 27 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVEG 27 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 38999998992989999999719
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=87.06 E-value=0.38 Score=21.08 Aligned_cols=32 Identities=22% Similarity=0.458 Sum_probs=25.2
Q ss_pred CCEEEEEECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 300565724996999994999986789999846
Q 000746 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLG 689 (1303)
Q Consensus 657 L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg 689 (1303)
++.--+.+ .|.=+.+.|++|+||||+...+..
T Consensus 6 ~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 6 IHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred EEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 78999999-999999981899998999999998
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=87.02 E-value=0.22 Score=22.77 Aligned_cols=44 Identities=18% Similarity=0.273 Sum_probs=28.5
Q ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCEEEEECCC
Q ss_conf 657249969999949999867899998469999999669994917998168
Q 000746 661 NLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQI 711 (1303)
Q Consensus 661 ~l~i~~G~~~~ivG~~GsGKSTLl~~llge~~~~~g~~~~~~~~iayv~Q~ 711 (1303)
|++-++-..++++||+|+||||.+--|...+. .+|. +++.+.-+
T Consensus 3 ~~~~~~p~vi~lvGptGvGKTTTiAKLA~~~~-~~g~------kV~lit~D 46 (211)
T d2qy9a2 3 NVEGKAPFVILMVGVNGVGKTTTIGKLARQFE-QQGK------SVMLAAGD 46 (211)
T ss_dssp CCCSCTTEEEEEECCTTSCHHHHHHHHHHHHH-TTTC------CEEEECCC
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH-HCCC------CEEEEECC
T ss_conf 77899997999989999998999999999999-7799------47998232
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=86.96 E-value=0.22 Score=22.71 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999499998678999984699
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge~ 691 (1303)
.++++|+.|+|||||++.+.+.-
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~~ 26 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASGQ 26 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989899999997197
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=86.94 E-value=0.19 Score=23.27 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=19.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 699999499998678999984699
Q 000746 668 SLVAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 668 ~~~~ivG~~GsGKSTLl~~llge~ 691 (1303)
.-+.|+|++|||||++++.++-..
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li~~~ 74 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELAYTG 74 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 658999079996899999999999
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=86.93 E-value=0.19 Score=23.17 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999949999867899998469
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGE 690 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge 690 (1303)
-++|+|.+++|||||+.+|++.
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 9999947898499999999998
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=86.85 E-value=0.052 Score=27.31 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999499998678999984699
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge~ 691 (1303)
.++++|++++|||||+++|.|+-
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=86.84 E-value=0.18 Score=23.38 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999499998678999984699
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge~ 691 (1303)
++.|.|.-|||||||++-++...
T Consensus 5 v~iitGFLGaGKTTll~~lL~~~ 27 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNEQ 27 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEECCCCCHHHHHHHHHHCC
T ss_conf 89986488899999999998567
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.84 E-value=0.22 Score=22.78 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999499998678999984699
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge~ 691 (1303)
+++++|..|+|||||++.+++.-
T Consensus 7 KivviG~~~vGKTsli~~~~~~~ 29 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTNA 29 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999979999999997498
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=86.83 E-value=0.34 Score=21.40 Aligned_cols=25 Identities=36% Similarity=0.554 Sum_probs=22.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999949999867899998469999
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGELPP 693 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge~~~ 693 (1303)
-++|+|.+.+|||||+..|+|....
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~~ 34 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWTS 34 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC-
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCH
T ss_conf 8999972488699999999704121
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.81 E-value=0.21 Score=22.87 Aligned_cols=22 Identities=32% Similarity=0.622 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999949999867899998469
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGE 690 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge 690 (1303)
+++++|..|+|||||++.+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~ 28 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQS 28 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999999997999999999739
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.67 E-value=0.21 Score=22.86 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999949999867899998469
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGE 690 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge 690 (1303)
+++++|..|+|||||++.+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=86.50 E-value=0.28 Score=22.05 Aligned_cols=26 Identities=27% Similarity=0.288 Sum_probs=21.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 96999994999986789999846999
Q 000746 667 GSLVAIVGGTGEGKTSLVSAMLGELP 692 (1303)
Q Consensus 667 G~~~~ivG~~GsGKSTLl~~llge~~ 692 (1303)
.....++||+|+|||.|.+.|...+.
T Consensus 52 ~~~~lf~Gp~GvGKT~lak~la~~l~ 77 (315)
T d1r6bx3 52 VGSFLFAGPTGVGKTEVTVQLSKALG 77 (315)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHCC
T ss_conf 65899977875006999999986336
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.39 E-value=0.25 Score=22.36 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999499998678999984699
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge~ 691 (1303)
+++++|..|+|||||++.+++.-
T Consensus 6 KivlvG~~~vGKTsli~~~~~~~ 28 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEKK 28 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999949899999997299
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.30 E-value=0.23 Score=22.64 Aligned_cols=23 Identities=30% Similarity=0.328 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999499998678999984699
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge~ 691 (1303)
+++++|..|+|||||+..+.+.-
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~~ 26 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKDQ 26 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989938899999997199
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=86.21 E-value=0.25 Score=22.42 Aligned_cols=24 Identities=38% Similarity=0.476 Sum_probs=21.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 999949999867899998469999
Q 000746 670 VAIVGGTGEGKTSLVSAMLGELPP 693 (1303)
Q Consensus 670 ~~ivG~~GsGKSTLl~~llge~~~ 693 (1303)
+.|.||+|||||.|++++..++..
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~~~~ 62 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNEAKK 62 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 799888998399999999987446
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.21 E-value=0.23 Score=22.58 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999949999867899998469
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGE 690 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge 690 (1303)
+++++|..|+|||||++.+.+.
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998990989999999849
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=86.05 E-value=0.43 Score=20.65 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=22.3
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 24996999994999986789999846
Q 000746 664 IPVGSLVAIVGGTGEGKTSLVSAMLG 689 (1303)
Q Consensus 664 i~~G~~~~ivG~~GsGKSTLl~~llg 689 (1303)
.-.|.=+.+.|++|+||||+...+..
T Consensus 11 ~~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 11 DIYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred EECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 99999999980899998999999998
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.95 E-value=0.27 Score=22.10 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999499998678999984699
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge~ 691 (1303)
+++++|..|+|||||++.+.+.-
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~~~ 31 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTDDT 31 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 89999989908899999997199
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.92 E-value=0.26 Score=22.20 Aligned_cols=23 Identities=22% Similarity=0.481 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999499998678999984699
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge~ 691 (1303)
.++|+|+.|+|||||++.+.+.-
T Consensus 8 KivvvG~~~vGKTsli~~l~~~~ 30 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSDDT 30 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999909899999996198
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.85 E-value=0.27 Score=22.11 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC-CC
Q ss_conf 999994999986789999846-99
Q 000746 669 LVAIVGGTGEGKTSLVSAMLG-EL 691 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llg-e~ 691 (1303)
+++++|..|+|||||++.+.+ +.
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~~~~ 27 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCAGRF 27 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 999999999298999999973999
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.79 E-value=0.27 Score=22.07 Aligned_cols=22 Identities=41% Similarity=0.622 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999949999867899998469
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGE 690 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge 690 (1303)
+++++|+.|+|||||++.+.+.
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998997899999999739
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.79 E-value=0.29 Score=21.94 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999949999867899998469
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGE 690 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge 690 (1303)
+++++|+.|+|||||++.+.+.
T Consensus 8 KI~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999997999999999849
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=85.79 E-value=0.26 Score=22.24 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999994999986789999846
Q 000746 669 LVAIVGGTGEGKTSLVSAMLG 689 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llg 689 (1303)
-++|+|++|||||||..+|+-
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~ 28 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILY 28 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHH
T ss_conf 999995898998999999999
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.70 E-value=0.15 Score=24.07 Aligned_cols=23 Identities=39% Similarity=0.462 Sum_probs=20.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99994999986789999846999
Q 000746 670 VAIVGGTGEGKTSLVSAMLGELP 692 (1303)
Q Consensus 670 ~~ivG~~GsGKSTLl~~llge~~ 692 (1303)
..+.||.|+||||+.+.+..++.
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l~ 61 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHELL 61 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHHH
T ss_conf 99988999870546999999972
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.62 E-value=0.29 Score=21.92 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999499998678999984699
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge~ 691 (1303)
+++++|..|+|||||++.+++.-
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~~ 27 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999919899999997299
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.61 E-value=0.28 Score=22.01 Aligned_cols=22 Identities=36% Similarity=0.371 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999949999867899998469
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGE 690 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge 690 (1303)
+++++|..|+|||||++.+.+.
T Consensus 5 KivlvG~~~vGKTsLi~r~~~~ 26 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCEN 26 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999993989999999829
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.58 E-value=0.14 Score=24.08 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=20.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99994999986789999846999
Q 000746 670 VAIVGGTGEGKTSLVSAMLGELP 692 (1303)
Q Consensus 670 ~~ivG~~GsGKSTLl~~llge~~ 692 (1303)
..+.||.|+||||+++++..++.
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l~ 60 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREIY 60 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99988998775589999999851
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=85.50 E-value=0.47 Score=20.42 Aligned_cols=12 Identities=33% Similarity=0.288 Sum_probs=5.6
Q ss_pred EEEEEECCCCCC
Q ss_conf 799992499940
Q 000746 792 TRILVTNQLHFL 803 (1303)
Q Consensus 792 TvilvTH~~~~l 803 (1303)
.+|..|++.+.+
T Consensus 152 ~vIatTn~~~~l 163 (256)
T d1lv7a_ 152 IVIAATNRPDVL 163 (256)
T ss_dssp EEEEEESCTTTS
T ss_pred EEEEECCCCCCC
T ss_conf 999807993107
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=85.41 E-value=0.27 Score=22.07 Aligned_cols=22 Identities=50% Similarity=0.723 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999949999867899998469
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGE 690 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge 690 (1303)
-++|+|++|+|||||..+|+..
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~ 25 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYK 25 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999948898099999999997
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.40 E-value=0.29 Score=21.91 Aligned_cols=22 Identities=32% Similarity=0.623 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999949999867899998469
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGE 690 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge 690 (1303)
+++++|..|+|||||++.+.+.
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997996989999999739
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=85.37 E-value=0.35 Score=21.35 Aligned_cols=27 Identities=26% Similarity=0.230 Sum_probs=21.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 996999994999986789999846999
Q 000746 666 VGSLVAIVGGTGEGKTSLVSAMLGELP 692 (1303)
Q Consensus 666 ~G~~~~ivG~~GsGKSTLl~~llge~~ 692 (1303)
....++++||+|+||||.+--|...+.
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 986899989999988999999999999
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.24 E-value=0.42 Score=20.71 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999499998678999984699
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge~ 691 (1303)
+++++|..|+|||||++.+.+.-
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~~ 30 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKGQ 30 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999949899999998598
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.16 E-value=0.2 Score=23.01 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999499998678999984699
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge~ 691 (1303)
+++++|+.|+|||||++.+.+.-
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~~ 27 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTGE 27 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC---
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999908899999998498
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=85.06 E-value=0.25 Score=22.42 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=22.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999949999867899998469999
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGELPP 693 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge~~~ 693 (1303)
.+.|-|+.|+||||+++.|...+..
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~ 32 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASG 32 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9999888667899999999998656
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.86 E-value=0.3 Score=21.83 Aligned_cols=22 Identities=23% Similarity=0.587 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999949999867899998469
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGE 690 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge 690 (1303)
+++++|..|+|||||++.+.+.
T Consensus 7 KI~lvG~~~vGKTsll~~~~~~ 28 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIEK 28 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990999999999709
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.83 E-value=0.34 Score=21.41 Aligned_cols=22 Identities=32% Similarity=0.600 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999949999867899998469
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGE 690 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge 690 (1303)
+++++|..|+|||||++.+.+.
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~~ 27 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVED 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998994999999999739
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=84.79 E-value=0.2 Score=23.14 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=22.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 99999499998678999984699999
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGELPPL 694 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge~~~~ 694 (1303)
.+.|-|+.|+||||+++.|...+...
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~~~ 32 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFAIT 32 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 99998887788999999999987346
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.63 E-value=0.35 Score=21.31 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999949999867899998469
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGE 690 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge 690 (1303)
.++++|..|+|||||++.+++.
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998995989999999709
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.56 E-value=0.21 Score=22.99 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999949999867899998469
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGE 690 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge 690 (1303)
.++++|..|+|||||++.+++.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994999999999709
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.50 E-value=0.27 Score=22.14 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=20.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99994999986789999846999
Q 000746 670 VAIVGGTGEGKTSLVSAMLGELP 692 (1303)
Q Consensus 670 ~~ivG~~GsGKSTLl~~llge~~ 692 (1303)
..+.||.|+||||+.++++.++.
T Consensus 36 lll~Gp~G~GKTt~~~~la~~l~ 58 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLESIF 58 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99889999988999999997622
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=84.49 E-value=0.27 Score=22.09 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=21.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 49969999949999867899998469
Q 000746 665 PVGSLVAIVGGTGEGKTSLVSAMLGE 690 (1303)
Q Consensus 665 ~~G~~~~ivG~~GsGKSTLl~~llge 690 (1303)
++.-.++++|+.|+|||||++.+.+.
T Consensus 15 ~k~~KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 15 NKELRILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 96689999999999889999887338
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.48 E-value=0.36 Score=21.22 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999499998678999984699
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge~ 691 (1303)
.++++|..|+|||||++.+++.-
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~~ 29 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTGS 29 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989978999999997197
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=84.40 E-value=0.19 Score=23.31 Aligned_cols=31 Identities=26% Similarity=0.280 Sum_probs=26.5
Q ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 0565724996999994999986789999846
Q 000746 659 NINLDIPVGSLVAIVGGTGEGKTSLVSAMLG 689 (1303)
Q Consensus 659 ~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg 689 (1303)
|.-+.+.+|+..+|.|+.|+|||+++..+..
T Consensus 60 D~l~pig~GQr~~If~~~g~GKt~ll~~~~~ 90 (285)
T d2jdia3 60 DSLVPIGRGQRELIIGDRQTGKTSIAIDTII 90 (285)
T ss_dssp HHHSCCBTTCBCEEEESTTSSHHHHHHHHHH
T ss_pred ECCCCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 4346766787787656888885899999997
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=84.35 E-value=0.43 Score=20.64 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=22.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 996999994999986789999846999
Q 000746 666 VGSLVAIVGGTGEGKTSLVSAMLGELP 692 (1303)
Q Consensus 666 ~G~~~~ivG~~GsGKSTLl~~llge~~ 692 (1303)
....++|+|.-|.|||||.+.+.....
T Consensus 43 ~~~~v~I~GmgGiGKTtLA~~v~~~~~ 69 (277)
T d2a5yb3 43 DSFFLFLHGRAGSGKSVIASQALSKSD 69 (277)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHCS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 840899977997888999999998556
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.23 E-value=0.51 Score=20.10 Aligned_cols=10 Identities=20% Similarity=0.155 Sum_probs=5.1
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999989
Q 000746 773 VSMARAVFNS 782 (1303)
Q Consensus 773 iaLARAi~~~ 782 (1303)
=++|||+.++
T Consensus 66 Tt~a~~la~~ 75 (253)
T d1sxja2 66 TTAAHLVAQE 75 (253)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 8999999999
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=83.92 E-value=0.38 Score=21.03 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999949999867899998469
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGE 690 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge 690 (1303)
+++++|..|+|||||++.+.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998995889999999729
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=83.87 E-value=0.35 Score=21.31 Aligned_cols=42 Identities=19% Similarity=0.192 Sum_probs=27.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCEEEEECCCCC
Q ss_conf 4996999994999986789999846999999966999491799816865
Q 000746 665 PVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISW 713 (1303)
Q Consensus 665 ~~G~~~~ivG~~GsGKSTLl~~llge~~~~~g~~~~~~~~iayv~Q~pw 713 (1303)
++...++++||+|+||||.+--|...+. ..| .+++.+.-+.+
T Consensus 10 k~p~vi~lvGptGvGKTTTiAKLA~~~~-~~g------~kV~lit~Dt~ 51 (211)
T d1j8yf2 10 KIPYVIMLVGVQGTGKATTAGKLAYFYK-KKG------FKVGLVGADVY 51 (211)
T ss_dssp SSSEEEEEECSCCC----HHHHHHHHHH-HTT------CCEEEEECCCS
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH-HCC------CCEEEEEEECC
T ss_conf 9998999989999998999999999999-779------93699972023
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=83.86 E-value=0.58 Score=19.72 Aligned_cols=41 Identities=24% Similarity=0.274 Sum_probs=27.7
Q ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCEEEE
Q ss_conf 5724996999994999986789999846999999966999491799
Q 000746 662 LDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAY 707 (1303)
Q Consensus 662 l~i~~G~~~~ivG~~GsGKSTLl~~llge~~~~~g~~~~~~~~iay 707 (1303)
+-.-.|.=+.|.|++|+||||+...++.. |.....+..+..
T Consensus 10 ~v~~~g~gvli~G~sg~GKS~la~~l~~~-----g~~li~DD~~~~ 50 (169)
T d1ko7a2 10 LVDVYGVGVLITGDSGIGKSETALELIKR-----GHRLVADDNVEI 50 (169)
T ss_dssp EEEETTEEEEEEESTTSSHHHHHHHHHHT-----TCEEEESSEEEE
T ss_pred EEEECCEEEEEEECCCCCHHHHHHHHHHC-----CCEEEECCEEEE
T ss_conf 99999999999808999999999999984-----993881786899
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.77 E-value=0.38 Score=21.09 Aligned_cols=23 Identities=22% Similarity=0.507 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999499998678999984699
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge~ 691 (1303)
+++++|..|+|||||++.+.+.-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~~ 27 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999989989999999997098
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.69 E-value=0.41 Score=20.85 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999949999867899998469
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGE 690 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge 690 (1303)
+++++|..|+|||||++.++..
T Consensus 4 KivliG~~~vGKTsli~r~~~~ 25 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAKD 25 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999995989999999729
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.61 E-value=0.38 Score=21.02 Aligned_cols=22 Identities=36% Similarity=0.533 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999949999867899998469
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGE 690 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge 690 (1303)
+++++|+.|+|||||++.+++.
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~~ 29 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKDG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999992999999999719
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=83.40 E-value=0.36 Score=21.21 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=21.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 96999994999986789999846999
Q 000746 667 GSLVAIVGGTGEGKTSLVSAMLGELP 692 (1303)
Q Consensus 667 G~~~~ivG~~GsGKSTLl~~llge~~ 692 (1303)
.=.++++|+.|+|||||++.+.+...
T Consensus 12 ~~kIvlvG~~~vGKTSli~rl~~~~~ 37 (173)
T d1e0sa_ 12 EMRILMLGLDAAGKTTILYKLKLGQS 37 (173)
T ss_dssp CEEEEEEEETTSSHHHHHHHTTCCCC
T ss_pred EEEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 47999999999878999999844888
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.38 E-value=0.44 Score=20.63 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999949999867899998469
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGE 690 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge 690 (1303)
+++++|..|+|||||++.++..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999998999999999649
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.36 E-value=0.39 Score=20.95 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999499998678999984699
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge~ 691 (1303)
+++++|..|+|||||+..+.+.-
T Consensus 5 KvvllG~~~vGKTSli~r~~~~~ 27 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTNK 27 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999969999999997199
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=83.19 E-value=0.37 Score=21.17 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999949999867899998469
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGE 690 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge 690 (1303)
-++|+|.+.+|||||+.+|++.
T Consensus 5 ni~iiGHvd~GKSTL~~~l~~~ 26 (196)
T d1d2ea3 5 NVGTIGHVDHGKTTLTAAITKI 26 (196)
T ss_dssp EEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 8999958898099999999999
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=82.68 E-value=0.46 Score=20.47 Aligned_cols=22 Identities=23% Similarity=0.513 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999499998678999984699
Q 000746 670 VAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 670 ~~ivG~~GsGKSTLl~~llge~ 691 (1303)
++++|.+.+|||||+..|+...
T Consensus 12 i~viGHVd~GKSTL~~~Ll~~~ 33 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLLHDS 33 (222)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9999378989899999999986
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=82.39 E-value=0.44 Score=20.60 Aligned_cols=22 Identities=27% Similarity=0.545 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999949999867899998469
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGE 690 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge 690 (1303)
-++++|.+++|||||+..|+..
T Consensus 5 Ni~viGHVd~GKTTL~~~Ll~~ 26 (224)
T d1jnya3 5 NLIVIGHVDHGKSTLVGRLLMD 26 (224)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 8999944799999999999998
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=82.07 E-value=0.58 Score=19.75 Aligned_cols=14 Identities=14% Similarity=-0.078 Sum_probs=5.8
Q ss_pred HHHHCCCCCCCCCE
Q ss_conf 99846999999966
Q 000746 685 SAMLGELPPLKDAS 698 (1303)
Q Consensus 685 ~~llge~~~~~g~~ 698 (1303)
++|=+..+.-.|+.
T Consensus 57 raID~l~pigkGQr 70 (276)
T d2jdid3 57 KVVDLLAPYAKGGK 70 (276)
T ss_dssp HHHHHHSCEETTCE
T ss_pred EEEEEECCCCCCCE
T ss_conf 20310256367887
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=82.02 E-value=0.54 Score=19.97 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=21.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9699999499998678999984699
Q 000746 667 GSLVAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 667 G~~~~ivG~~GsGKSTLl~~llge~ 691 (1303)
+=.++|+|...+|||||++++.+.-
T Consensus 10 ~~kiGivG~Pn~GKSTlfnalT~~~ 34 (296)
T d1ni3a1 10 NLKTGIVGMPNVGKSTFFRAITKSV 34 (296)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 7379997899998999999997789
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.02 E-value=0.41 Score=20.84 Aligned_cols=10 Identities=20% Similarity=0.042 Sum_probs=4.6
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999989
Q 000746 773 VSMARAVFNS 782 (1303)
Q Consensus 773 iaLARAi~~~ 782 (1303)
=++||++.++
T Consensus 49 ttl~~~la~~ 58 (227)
T d1sxjc2 49 TSTIVALARE 58 (227)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 5899999998
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=81.56 E-value=0.29 Score=21.85 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999994999986789999846999
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGELP 692 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge~~ 692 (1303)
.+.+.||.|+|||+++++++.++.
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l~ 71 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRVS 71 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899678999899999999999987
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=81.51 E-value=0.47 Score=20.40 Aligned_cols=10 Identities=10% Similarity=0.321 Sum_probs=5.1
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999989
Q 000746 773 VSMARAVFNS 782 (1303)
Q Consensus 773 iaLARAi~~~ 782 (1303)
=.+||++.++
T Consensus 49 Ttla~~la~~ 58 (239)
T d1ixsb2 49 TTLAHVIAHE 58 (239)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 8899999998
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=81.37 E-value=0.46 Score=20.43 Aligned_cols=43 Identities=21% Similarity=0.394 Sum_probs=27.0
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEC----CEEEEECC
Q ss_conf 249969999949999867899998469999999669994----91799816
Q 000746 664 IPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR----GTVAYVPQ 710 (1303)
Q Consensus 664 i~~G~~~~ivG~~GsGKSTLl~~llge~~~~~g~~~~~~----~~iayv~Q 710 (1303)
.+++. ...+||+|+|||-+.+.|...++. ..+... ...+|+..
T Consensus 66 ~p~~n-iLfiGPTGvGKTElAk~LA~~~~~---~~ir~D~s~~~e~gyvg~ 112 (364)
T d1um8a_ 66 LSKSN-ILLIGPTGSGKTLMAQTLAKHLDI---PIAISDATSLTEAGYVGE 112 (364)
T ss_dssp CCCCC-EEEECCTTSSHHHHHHHHHHHTTC---CEEEEEGGGCC-------
T ss_pred CCCCC-EEEECCCCCCHHHHHHHHHHHCCC---CEEEHHHHHCCCCHHHHH
T ss_conf 78753-244189986378999999864435---331112220144316676
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=81.18 E-value=0.62 Score=19.53 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999499998678999984699
Q 000746 669 LVAIVGGTGEGKTSLVSAMLGEL 691 (1303)
Q Consensus 669 ~~~ivG~~GsGKSTLl~~llge~ 691 (1303)
.++++|..-+|||||+++|.|--
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred CEEEECCCCCCHHHHHHHHHCCC
T ss_conf 17688999998999999997889
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=80.74 E-value=0.75 Score=18.94 Aligned_cols=11 Identities=18% Similarity=0.274 Sum_probs=6.3
Q ss_pred CEEEEEECCCC
Q ss_conf 87999924999
Q 000746 791 KTRILVTNQLH 801 (1303)
Q Consensus 791 ~TvilvTH~~~ 801 (1303)
.-+|++|++..
T Consensus 257 ~p~i~ttN~~~ 267 (362)
T d1svma_ 257 PPGIVTMNEYS 267 (362)
T ss_dssp CCEEEEECSCC
T ss_pred CCCEEECCCCC
T ss_conf 77246506543
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=80.31 E-value=0.54 Score=19.92 Aligned_cols=25 Identities=28% Similarity=0.230 Sum_probs=21.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6999994999986789999846999
Q 000746 668 SLVAIVGGTGEGKTSLVSAMLGELP 692 (1303)
Q Consensus 668 ~~~~ivG~~GsGKSTLl~~llge~~ 692 (1303)
-.+.|-|+.|+||||+++.|...+.
T Consensus 5 lrI~IEG~iGsGKTTl~~~La~~l~ 29 (329)
T d1e2ka_ 5 LRVYIDGPHGMGKTTTTQLLVALGS 29 (329)
T ss_dssp EEEEECSCTTSSHHHHHHHHTC---
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 2999989867789999999999817
|