Citrus Sinensis ID: 000755
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1300 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LK64 | 1514 | ABC transporter C family | yes | no | 0.676 | 0.580 | 0.667 | 0.0 | |
| Q8VZZ4 | 1466 | ABC transporter C family | no | no | 0.672 | 0.596 | 0.621 | 0.0 | |
| Q9LK62 | 1493 | ABC transporter C family | no | no | 0.663 | 0.577 | 0.633 | 0.0 | |
| Q7GB25 | 1514 | ABC transporter C family | no | no | 0.557 | 0.478 | 0.509 | 0.0 | |
| Q9M1C7 | 1506 | ABC transporter C family | no | no | 0.595 | 0.513 | 0.460 | 0.0 | |
| Q7DM58 | 1516 | ABC transporter C family | no | no | 0.552 | 0.473 | 0.421 | 1e-162 | |
| Q7FB56 | 1053 | Putative ABC transporter | no | no | 0.288 | 0.356 | 0.647 | 1e-161 | |
| Q9LZJ5 | 1539 | ABC transporter C family | no | no | 0.604 | 0.510 | 0.383 | 1e-159 | |
| Q9LYS2 | 1453 | ABC transporter C family | no | no | 0.505 | 0.452 | 0.437 | 1e-158 | |
| Q8LGU1 | 1464 | ABC transporter C family | no | no | 0.476 | 0.422 | 0.448 | 1e-150 |
| >sp|Q9LK64|AB3C_ARATH ABC transporter C family member 3 OS=Arabidopsis thaliana GN=ABCC3 PE=1 SV=1 | Back alignment and function desciption |
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Score = 1154 bits (2984), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 593/888 (66%), Positives = 709/888 (79%), Gaps = 9/888 (1%)
Query: 7 FLLKPAFLRGISGSLHLVLLLGLFVSWVWKKLRVGVSDSEGYKERFKKKSVLRHKLILFC 66
FLLKP FLR +SG LH VLLL LF SWV KK+R DS G E K + K LFC
Sbjct: 31 FLLKPLFLRWLSGFLHSVLLLVLFFSWVRKKIR---GDS-GVTESLKDRRDFGFKSALFC 86
Query: 67 CFAVSVFNLVLCLLDYFSWFGNDW-SGDKLVTLADLVLRTLGWGAICVYLHSQFFNSGQQ 125
A+S+ NLVL L F W+ + W ++LV+ +L + WG + + LH + + +
Sbjct: 87 SLALSLLNLVLMSLSGFYWYESGWLDNEQLVSSLGFLLGMVSWGVLSICLH-RCRDCEHK 145
Query: 126 RFPLLLRLWWGFYLCLSCYCLVSDIVLYAQHVSLSVHYLVSDVVSVISGFVFCYVGFLKR 185
+ P LLRLW FYL +SCY LV D V+Y + ++ VH LV D+V+ I+ YV LK+
Sbjct: 146 KAPFLLRLWLVFYLVVSCYSLVVDFVMYERRETVPVHLLVFDIVAFIAAVFLGYVAVLKK 205
Query: 186 DKGEDTLLLQETLLDG-DSSIGNGE-VSSIKSRGTDNVTPYSNASLFSVLTFSWMGSLIS 243
D+ +L+E LL+G DS +G + V K+ G+ TPYS A + S+LTFSWM LI
Sbjct: 206 DRSNSNGVLEEPLLNGGDSRVGGDDSVELNKTNGSGEATPYSRAGILSLLTFSWMSPLID 265
Query: 244 LGNKKTLDLEDVPQLDSGDSVVGCFPIFRNKLEA-NRVEGNKVTAFKLTKALFFSAWKEI 302
+GNKKTLDLEDVPQL DSVVG P FR+ LE+ + E + VT FKL KAL+F+A EI
Sbjct: 266 IGNKKTLDLEDVPQLHDTDSVVGLAPKFRSMLESPDGGERSGVTTFKLIKALYFTAQWEI 325
Query: 303 VFTAILALLYTLANYVGPYLIDTFVQYLNGEREFKNEGYVLVSTFFVAKIVECLAQRHWM 362
+ TA A +YT+A+YVGP LIDTFVQYLNG R++ +EGYVLV TFF AKIVECL+QRHW
Sbjct: 326 LVTAFFAFIYTVASYVGPALIDTFVQYLNGRRQYNHEGYVLVITFFAAKIVECLSQRHWF 385
Query: 363 FRLQVAGIKMRSVLVSMVYNKGLTLSCQAKQSYTSGEIINFMTVDAERIGDFGWYMHDPW 422
FRLQ GI+MRS LV+M+Y KGLTLSCQ+KQ TSGEIINFMTVDAERIG+F WYMHDPW
Sbjct: 386 FRLQKVGIRMRSALVAMIYEKGLTLSCQSKQGRTSGEIINFMTVDAERIGNFSWYMHDPW 445
Query: 423 LVILQVSLALLILYKNLGLASIAALFATVLIMLTNFPLGRLQENFQDKLMGSKDKRMKVT 482
+V+LQV LAL ILY+NLGLASIAAL AT+++ML NFP GR+QE FQ+KLM +KD RMK T
Sbjct: 446 MVLLQVGLALWILYRNLGLASIAALVATIIVMLINFPFGRMQERFQEKLMEAKDSRMKST 505
Query: 483 SEILRNMRILKLQGWEMKFLSKIIELRKIEAGWLKKFLYTGAMTSFVFWGAPTFVSVATF 542
SEILRNMRILKLQGWEMKFLSKI +LRK E GWLKK++Y A+ SFVFWGAPT VSV+TF
Sbjct: 506 SEILRNMRILKLQGWEMKFLSKIFDLRKSEEGWLKKYVYNSAVISFVFWGAPTLVSVSTF 565
Query: 543 GACMLLGIPLESGKILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIASFLCLDDLQS 602
GAC+LLGIPLESGKILSALATFRILQEPIYNLPDTISMI+QTKVSLDR+AS+LCLD+LQ
Sbjct: 566 GACILLGIPLESGKILSALATFRILQEPIYNLPDTISMIVQTKVSLDRLASYLCLDNLQP 625
Query: 603 DVVEKHPRGSSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLL 662
D+VE+ P+GSS+ A+E+++ +WD+SS+NPTL+DIN KVF GM+VAVCGTVGSGKSSLL
Sbjct: 626 DIVERLPKGSSDVAVEVINSTLSWDVSSSNPTLKDINFKVFPGMKVAVCGTVGSGKSSLL 685
Query: 663 SCILGEVPKISGTLKLCGTKAYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKK 722
S +LGEVPK+SG+LK+CGTKAYVAQSPWIQSG IEDNILFGKPM+RE+YD+VLEACSL K
Sbjct: 686 SSLLGEVPKVSGSLKVCGTKAYVAQSPWIQSGKIEDNILFGKPMERERYDKVLEACSLSK 745
Query: 723 DLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFK 782
DLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFK
Sbjct: 746 DLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFK 805
Query: 783 EVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSGTDFMVLVGAHQ 842
EVLLGLL SK+VIYVTHQVEFLPAADLILVMKDG+I+QAGKYNDILNSGTDFM L+GAHQ
Sbjct: 806 EVLLGLLCSKSVIYVTHQVEFLPAADLILVMKDGRISQAGKYNDILNSGTDFMELIGAHQ 865
Query: 843 QALSALDSIEGGPVSERISMNKENGGMDTTNGVTMKEGNEDIQTDKVD 890
+AL+ +DS++ VSE+ ++ +EN + V K ++D++ DK++
Sbjct: 866 EALAVVDSVDANSVSEKSALGQENVIVKDAIAVDEKLESQDLKNDKLE 913
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Pump for glutathione S-conjugates. Mediates the transport of glutathione conjugates such as chlorodinitrobenzene-GS (DNB-GS), and of chlorophyll catabolites such as Bn-NCC-1. Transports also heavy metals such as cadmium (Cd). Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 6EC: .EC: 3EC: .EC: 4EC: 4 |
| >sp|Q8VZZ4|AB6C_ARATH ABC transporter C family member 6 OS=Arabidopsis thaliana GN=ABCC6 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 1064 bits (2751), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 559/899 (62%), Positives = 670/899 (74%), Gaps = 25/899 (2%)
Query: 3 PGTEFLLKPAFLRGISGSLHLVLLLGLFVSWVWKKLRVGVSDSEG-YKERFKKKSVLRHK 61
P LL+P +L +S L+LVLLL LF SW++KK RV D++ E FK S +K
Sbjct: 4 PIDSLLLQPIYLSVLSFFLNLVLLLILFGSWLFKK-RVACEDTDAIMNEEFKHISFSYNK 62
Query: 62 LILFCCFAVSVFNLVLCLLDYFSWFGNDWSGDKLVTLADLVLRTLGWGAICVYLHSQFFN 121
L+L CC ++SVF VL LL W N W DL+L L WG+I VYL ++ N
Sbjct: 63 LVLICCVSLSVFYSVLSLLSCLHWHTNGWP------FLDLLLAALTWGSISVYLFGRYTN 116
Query: 122 SGQQRFPLLLRLWWGFYLCLSCYCLVSDIVLYAQHVSLSVHYLVSDVVSVISGFVFCYVG 181
S +Q+ LLR+WW F+ +SCY LV D VLY + +SVH+++SD+V V +G C
Sbjct: 117 SCEQKVLFLLRVWWVFFFVVSCYHLVVDFVLYKKQEMVSVHFVISDLVGVCAGLFLCCSC 176
Query: 182 FLKRDKGEDTLLLQETLLDGDSSIGNGEVSSIKSRGTDNVTPYSNASLFSVLTFSWMGSL 241
K+ +GE LL+E LL S N EV++ P+S A + S ++FSWM L
Sbjct: 177 LWKKGEGERIDLLKEPLLSSAESSDNEEVTA----------PFSKAGILSRMSFSWMSPL 226
Query: 242 ISLGNKKTLDLEDVPQLDSGDSVVGCFPIFRNKLEANRVEGNKVTAFKLTKALFFSAWKE 301
I+LGN+K +D++DVPQLD D+ F IFR+KLE + E ++T FKL KALF S W++
Sbjct: 227 ITLGNEKIIDIKDVPQLDRSDTTESLFWIFRSKLEWDDGE-RRITTFKLIKALFLSVWRD 285
Query: 302 IVFTAILALLYTLANYVGPYLIDTFVQYLNGEREFKNEGYVLVSTFFVAKIVECLAQRHW 361
IV +A+LA +YT++ YV PYL+D FVQYLNG R++KN+GYVLV+TFFVAK+VEC QR W
Sbjct: 286 IVLSALLAFVYTVSCYVAPYLMDNFVQYLNGNRQYKNQGYVLVTTFFVAKLVECQTQRQW 345
Query: 362 MFRLQVAGIKMRSVLVSMVYNKGLTLSCQAKQSYTSGEIINFMTVDAERIGDFGWYMHDP 421
FR Q AG+ MRSVLVSM+Y KGLTL C +KQ +TSGEIIN M VDA+RI F W+MHDP
Sbjct: 346 FFRGQKAGLGMRSVLVSMIYEKGLTLPCHSKQGHTSGEIINLMAVDADRISAFSWFMHDP 405
Query: 422 WLVILQVSLALLILYKNLGLASIAALFATVLIMLTNFPLGRLQENFQDKLMGSKDKRMKV 481
W+++LQVSLAL ILYK+LGL SIAA AT+L+ML N+P +L+E FQ LM SKD RMK
Sbjct: 406 WILVLQVSLALWILYKSLGLGSIAAFPATILVMLANYPFAKLEEKFQSSLMKSKDNRMKK 465
Query: 482 TSEILRNMRILKLQGWEMKFLSKIIELRKIEAGWLKKFLYTGAMTSFVFWGAPTFVSVAT 541
TSE+L NM+ILKLQGWEMKFLSKI+ELR IEAGWLKKF+Y + + V W AP+F+S
Sbjct: 466 TSEVLLNMKILKLQGWEMKFLSKILELRHIEAGWLKKFVYNSSAINSVLWAAPSFISATA 525
Query: 542 FGACMLLGIPLESGKILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIASFLCLDDLQ 601
FGAC+LL IPLESGKIL+ALATFRILQ PIY LP+TISMI+QTKVSL+RIASFLCLDDLQ
Sbjct: 526 FGACLLLKIPLESGKILAALATFRILQGPIYKLPETISMIVQTKVSLNRIASFLCLDDLQ 585
Query: 602 SDVVEKHPRGSSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSL 661
DVV + P GSSE A+EI +G F+WD SS PTLRD+N KV GM VA+CGTVGSGKSSL
Sbjct: 586 QDVVGRLPSGSSEMAVEISNGTFSWDDSSPIPTLRDMNFKVSQGMNVAICGTVGSGKSSL 645
Query: 662 LSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLK 721
LS ILGEVPKISG LK+CG KAY+AQSPWIQSG +E+NILFGKPM+RE YDRVLEACSL
Sbjct: 646 LSSILGEVPKISGNLKVCGRKAYIAQSPWIQSGKVEENILFGKPMEREWYDRVLEACSLN 705
Query: 722 KDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLF 781
KDLEIL F DQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLF
Sbjct: 706 KDLEILPFHDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLF 765
Query: 782 KEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSGTDFMVLVGAH 841
KEVLLGLLR KTVIYVTHQVEFLP ADLILVMKDGKITQAGKY++IL+SGTDFM LVGAH
Sbjct: 766 KEVLLGLLRHKTVIYVTHQVEFLPEADLILVMKDGKITQAGKYHEILDSGTDFMELVGAH 825
Query: 842 QQALSALDSIEGGPVSERISMNKENGGMDTTNGVTMKEGNEDIQTDKVDEQYYIPSARE 900
+AL+ +DS E G SE+ + +KEN + KE E+ +K Q RE
Sbjct: 826 TEALATIDSCETGYASEKSTTDKENEVLH------HKEKQENGSDNKPSGQLVQEEERE 878
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Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9LK62|AB7C_ARATH ABC transporter C family member 7 OS=Arabidopsis thaliana GN=ABCC7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1062 bits (2747), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 549/866 (63%), Positives = 659/866 (76%), Gaps = 4/866 (0%)
Query: 3 PGTEFLLKPAFLRGISGSLHLVLLLGLFVSWVWKKLRVGVSDSEGY-KERFKKKSVLRHK 61
P FLL+ + S +L+LLL +F S V+KK R+G +S+ + ERFK S+ +K
Sbjct: 10 PIVFFLLESNYFPMFSIFFNLLLLLVMFGSCVYKK-RLGWENSDAFTNERFKDMSLTYNK 68
Query: 62 LILFCCFAVSVFNLVLCLLDYFSWFGNDWSGDKLVTLADLVLRTLGWGAICVYLHSQFFN 121
L++ CC +S N VL LL F+ N W +L+ L DL+ L WGAI Y+ SQF
Sbjct: 69 LVVICCETLSALNSVLLLLSCFNLHKNGWDRSELMILLDLLFTALSWGAISFYIRSQFTY 128
Query: 122 SGQQRFPLLLRLWWGFYLCLSCYCLVSDIVLYAQHVSLSVHYLVSDVVSVISGFVFCYVG 181
S Q+FP+LLR+WW Y SCY L+ DI LY + +SVH L+SDV++V G CY
Sbjct: 129 SHDQKFPILLRVWWVLYFMFSCYRLLVDIALYKKQELVSVHLLLSDVLAVSVGLFLCYSC 188
Query: 182 FLKRDKGED-TLLLQETLLDGDSSIGNGEVSSIKSRGTDNVTPYSNASLFSVLTFSWMGS 240
K+ +GE LLL+E LL+G S V K+ + VTP+SNA S ++FSWM
Sbjct: 189 LQKQGQGERINLLLEEPLLNGAESSAATSVQLDKAEDDEVVTPFSNAGFLSHVSFSWMSP 248
Query: 241 LISLGNKKTLDLEDVPQLDSGDSVVGCFPIFRNKLEANRVEGNKVTAFKLTKALFFSAWK 300
LI LGN+K +D EDVPQ+D+ D F IFR+KLE + E ++T +KL KALFFS W+
Sbjct: 249 LIVLGNEKIIDSEDVPQVDNSDRAEKLFWIFRSKLEWDDGE-RRITTYKLIKALFFSVWR 307
Query: 301 EIVFTAILALLYTLANYVGPYLIDTFVQYLNGEREFKNEGYVLVSTFFVAKIVECLAQRH 360
+I+ + + A +YT++ YV PYL+DTFVQYLNG+R++ N+G VLV+TFFVAK+VEC A+R+
Sbjct: 308 DILLSTLFAFVYTVSCYVAPYLMDTFVQYLNGQRQYSNQGVVLVTTFFVAKLVECQARRN 367
Query: 361 WMFRLQVAGIKMRSVLVSMVYNKGLTLSCQAKQSYTSGEIINFMTVDAERIGDFGWYMHD 420
W FRLQ AGI MRSVLVSM+Y KGLTL C +KQ +TSGEIIN MTVDAERI F WYMHD
Sbjct: 368 WYFRLQKAGIGMRSVLVSMIYEKGLTLPCYSKQGHTSGEIINLMTVDAERISAFSWYMHD 427
Query: 421 PWLVILQVSLALLILYKNLGLASIAALFATVLIMLTNFPLGRLQENFQDKLMGSKDKRMK 480
PW+++LQ+SLALLILY++LGL SIAA AT L+ML N PL +L+E FQ LM SKD RMK
Sbjct: 428 PWILVLQISLALLILYRSLGLGSIAAFAATFLVMLGNIPLAKLEEKFQGNLMESKDNRMK 487
Query: 481 VTSEILRNMRILKLQGWEMKFLSKIIELRKIEAGWLKKFLYTGAMTSFVFWGAPTFVSVA 540
TSE L NMRILKLQGWEMKFL KI++LR IEAGWLKKF+Y A S V W AP+FVS
Sbjct: 488 KTSEALLNMRILKLQGWEMKFLHKILDLRGIEAGWLKKFVYNSAAISSVLWAAPSFVSAT 547
Query: 541 TFGACMLLGIPLESGKILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIASFLCLDDL 600
FGACMLL IPLESGKI++ALATFRILQ PIY LPDTISMI+QTKVSLDRIA+FLCLDDL
Sbjct: 548 AFGACMLLKIPLESGKIIAALATFRILQTPIYKLPDTISMIVQTKVSLDRIATFLCLDDL 607
Query: 601 QSDVVEKHPRGSSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSS 660
Q D +E+ P GSS+ +E+ +G F+WD SS PTL+DI K+ HGM +A+CGTVGSGKSS
Sbjct: 608 QQDGMERLPSGSSKMDVEVSNGAFSWDDSSPIPTLKDIRFKIPHGMNIAICGTVGSGKSS 667
Query: 661 LLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSL 720
LLS ILGEVPKISG LK+CG KAY+AQSPWIQSG +E+NILFGKPM RE Y RVLEACSL
Sbjct: 668 LLSSILGEVPKISGNLKVCGRKAYIAQSPWIQSGKVEENILFGKPMQREWYQRVLEACSL 727
Query: 721 KKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHL 780
KDLE+ F DQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHL
Sbjct: 728 NKDLEVFPFRDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHL 787
Query: 781 FKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSGTDFMVLVGA 840
FKEVLLGLLR+KTVIYVTHQ+EFLP ADLILVMKDG+ITQAGKYN+IL SGTDFM LVGA
Sbjct: 788 FKEVLLGLLRNKTVIYVTHQLEFLPEADLILVMKDGRITQAGKYNEILESGTDFMELVGA 847
Query: 841 HQQALSALDSIEGGPVSERISMNKEN 866
H AL+A+DS E G S + + +KE+
Sbjct: 848 HTDALAAVDSYEKGSASAQSTTSKES 873
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Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q7GB25|AB5C_ARATH ABC transporter C family member 5 OS=Arabidopsis thaliana GN=ABCC5 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 766 bits (1978), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/757 (50%), Positives = 523/757 (69%), Gaps = 32/757 (4%)
Query: 104 RTLGWGAIC-VYLHSQFFNSGQQRFPLLLRLWW--GFYLCLSCYCLVSDIVLYAQHVS-L 159
++L W + + LH ++ +S ++ P L+R+WW F +CL C V L + S
Sbjct: 119 QSLAWFVLSFLVLHLKYKSS--EKLPFLVRIWWFLAFSICL-CTMYVDGRRLAIEGWSRC 175
Query: 160 SVHYLVSDVVSVISGFVFCYVGF-------LKRDKGEDTLLLQETLLDGDSSIGNGEVSS 212
S H + + V+ GF+ C++ + + R + LQE LL + E +
Sbjct: 176 SSHVVANLAVTPALGFL-CFLAWRGVSGIQVTRSSSD----LQEPLLVEE------EAAC 224
Query: 213 IKSRGTDNVTPYSNASLFSVLTFSWMGSLISLGNKKTLDLEDVPQLDSGDSVVGCFPIFR 272
+K VTPYS A L S++T SW+ L+S G+K+ L+L+D+P L D + + +
Sbjct: 225 LK------VTPYSTAGLVSLITLSWLDPLLSAGSKRPLELKDIPLLAPRDRAKSSYKVLK 278
Query: 273 NKLEANRVEGNKVTAFKLTKALFFSAWKEIVFTAILALLYTLANYVGPYLIDTFVQYLNG 332
+ + + E N L +A+ S WKE A+ A L TL +YVGPYLI FV YL G
Sbjct: 279 SNWKRCKSE-NPSKPPSLARAIMKSFWKEAACNAVFAGLNTLVSYVGPYLISYFVDYLGG 337
Query: 333 EREFKNEGYVLVSTFFVAKIVECLAQRHWMFRLQVAGIKMRSVLVSMVYNKGLTLSCQAK 392
+ F +EGYVL FF +K++E + R W + + G+ +RS L +MVY KGL LS AK
Sbjct: 338 KEIFPHEGYVLAGIFFTSKLIETVTTRQWYMGVDILGMHVRSALTAMVYRKGLKLSSIAK 397
Query: 393 QSYTSGEIINFMTVDAERIGDFGWYMHDPWLVILQVSLALLILYKNLGLASIAALFATVL 452
Q++TSGEI+N+M VD +RIGD+ WY+HD W++ +Q+ LAL ILYK++G+A++A L AT++
Sbjct: 398 QNHTSGEIVNYMAVDVQRIGDYSWYLHDIWMLPMQIVLALAILYKSVGIAAVATLVATII 457
Query: 453 IMLTNFPLGRLQENFQDKLMGSKDKRMKVTSEILRNMRILKLQGWEMKFLSKIIELRKIE 512
+L PL ++QE++QDKLM +KD+RM+ TSE LRNMR+LKLQ WE ++ ++ E+R+ E
Sbjct: 458 SILVTIPLAKVQEDYQDKLMTAKDERMRKTSECLRNMRVLKLQAWEDRYRVRLEEMREEE 517
Query: 513 AGWLKKFLYTGAMTSFVFWGAPTFVSVATFGACMLLGIPLESGKILSALATFRILQEPIY 572
GWL+K LY+ A +F+FW +P FV+ TF + LG L +G +LSALATFRILQEP+
Sbjct: 518 YGWLRKALYSQAFVTFIFWSSPIFVAAVTFATSIFLGTQLTAGGVLSALATFRILQEPLR 577
Query: 573 NLPDTISMIIQTKVSLDRIASFLCLDDLQSDVVEKHPRGSSETAIEIVDGNFAWDISSNN 632
N PD +SM+ QTKVSLDRI+ FL ++LQ D PRG S AIEI DG F WD S+
Sbjct: 578 NFPDLVSMMAQTKVSLDRISGFLQEEELQEDATVVIPRGLSNIAIEIKDGVFCWDPFSSR 637
Query: 633 PTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQ 692
PTL I +KV GMRVAVCGTVGSGKSS +SCILGE+PKISG +++CGT YV+QS WIQ
Sbjct: 638 PTLSGIQMKVEKGMRVAVCGTVGSGKSSFISCILGEIPKISGEVRICGTTGYVSQSAWIQ 697
Query: 693 SGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQI 752
SGNIE+NILFG PM++ KY V++ACSLKKD+E+ S GDQT+IGERGINLSGGQKQR+Q+
Sbjct: 698 SGNIEENILFGSPMEKTKYKNVIQACSLKKDIELFSHGDQTIIGERGINLSGGQKQRVQL 757
Query: 753 ARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILV 812
ARALYQDADIYL DDPFSA+DAHTGS LF++ +L L KTV++VTHQVEFLPAADLILV
Sbjct: 758 ARALYQDADIYLLDDPFSALDAHTGSDLFRDYILSALAEKTVVFVTHQVEFLPAADLILV 817
Query: 813 MKDGKITQAGKYNDILNSGTDFMVLVGAHQQALSALD 849
+K+G+I Q+GKY+D+L +GTDF LV AH +A+ A+D
Sbjct: 818 LKEGRIIQSGKYDDLLQAGTDFKALVSAHHEAIEAMD 854
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Pump for glutathione S-conjugates. Involved in regulation of K(+) and Na(+) cell content. Mediates resistance to NaCl and Li(+), confers sensitivity to sulfonylurea drugs such as glibenclamide (inducer of stomatal opening), and required for stomatal opening regulation by auxin, abscisic acid (ABA) and external Ca(2+). Transports oestradiol-17-(beta-D-glucuronide) (E(2)17G). Involved in the root auxin content regulation that controls the transition from primary root elongation to lateral root formation. Plays a role in ABA-mediated germination inhibition. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9M1C7|AB9C_ARATH ABC transporter C family member 9 OS=Arabidopsis thaliana GN=ABCC9 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/810 (46%), Positives = 520/810 (64%), Gaps = 36/810 (4%)
Query: 126 RFPLLLRLWWGFYLCLSCYCLVSDI-VLYAQHVSLSVHYLVSDVVSVISGFVFCYV---- 180
+FP +LR WW LC D + A+H L +D+ +++ V
Sbjct: 146 KFPWMLRSWW---LCSFILSFSFDAHFITAKHEPLEFQDY-ADLTGLLASLFLLAVSIRG 201
Query: 181 --GFLKRDKGEDTLLLQETLLDGDSSIGNGEVSSIKSRGTDNVTPYSNASLFSVLTFSWM 238
GF + +T E LL GD + N K + +PY NA+LF +TFSW+
Sbjct: 202 KTGFHLLESSGNT----EPLLLGDQTEQN------KKDSYSSSSPYGNATLFQRITFSWI 251
Query: 239 GSLISLGNKKTLDLEDVPQLDSGDSVVGCFPIFRNKLEANRVEGNKVTAFKLTKALFFSA 298
L SLG K+ L+ +DVP +D DS C F KL+ + + AF L +
Sbjct: 252 NPLFSLGYKRPLEKDDVPDIDVKDSARFCSHAFDQKLKTTKEKEGPGNAFFYNSVLRY-V 310
Query: 299 WKEIVFTAILALLYTLANYVGPYLIDTFVQYLNGER-EFKNEGYVLVSTFFVAKIVECLA 357
W++ A+ A++ Y+GPYLI+ FV++L+ ++ + N GY+L F AKIVE +
Sbjct: 311 WRKAAINAVFAVVNASTAYIGPYLINDFVEFLSEKQSQSLNHGYLLALGFLTAKIVETVT 370
Query: 358 QRHWMFRLQVAGIKMRSVLVSMVYNKGLTLSCQAKQSYTSGEIINFMTVDAERIGDFGWY 417
QR W+F + G+++R+ L+S +Y KGL LS Q++QS+TSGEIIN+M+VD +RI DF WY
Sbjct: 371 QRQWIFGARQLGLRLRAALISHIYQKGLVLSSQSRQSHTSGEIINYMSVDVQRITDFIWY 430
Query: 418 MHDPWLVILQVSLALLILYKNLGLASIAALFATVLIMLTNFPLGRLQENFQDKLMGSKDK 477
+++ W++ +Q+ A+ IL K+LGL ++AAL T+++M N+PL RLQ N+Q +M +KD
Sbjct: 431 VNNIWMLPIQIFSAIYILQKHLGLGALAALVTTLMVMACNYPLTRLQRNYQSDIMNAKDD 490
Query: 478 RMKVTSEILRNMRILKLQGWEMKFLSKIIELRKIEAGWLKKFLYTGAMTSFVFWGAPTFV 537
RMK TSEIL+NM+ILKLQ W+ +FL+K+ LRK E L K L A T+F+ WGAP+ +
Sbjct: 491 RMKATSEILKNMKILKLQAWDNQFLNKVKTLRKKEYDCLWKSLRLQAFTTFILWGAPSLI 550
Query: 538 SVATFGACMLLGIPLESGKILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIASFLCL 597
SV TF CML+G+ L +G +LSALATF++LQ PI+ LPD +S ++Q+KVS DRIAS+L
Sbjct: 551 SVVTFVTCMLMGVKLTAGAVLSALATFQMLQSPIFGLPDLLSALVQSKVSADRIASYLQQ 610
Query: 598 DDLQSDVVEKHPRGSSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSG 657
+ Q D VE + +E ++EI +G F+W+ S+ PTL DI LKV GM+VAVCG VGSG
Sbjct: 611 SETQKDAVEYCSKDHTELSVEIENGAFSWEPESSRPTLDDIELKVKSGMKVAVCGAVGSG 670
Query: 658 KSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEA 717
KSSLLS ILGE+ K+ GT+++ G +AYV QSPWI SG I DNILFG + EKY+R ++A
Sbjct: 671 KSSLLSSILGEIQKLKGTVRVSGKQAYVPQSPWILSGTIRDNILFGSMYESEKYERTVKA 730
Query: 718 CSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTG 777
C+L KD E+ S GD T IGERGIN+SGGQKQRIQIARA+YQ+ADIYL DDPFSAVDAHTG
Sbjct: 731 CALIKDFELFSNGDLTEIGERGINMSGGQKQRIQIARAVYQNADIYLLDDPFSAVDAHTG 790
Query: 778 SHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSGTDFMVL 837
LF++ L+G+L+ KTV+YVTHQVEFLPAADLILVM++G++ QAGK+ ++L F VL
Sbjct: 791 RELFEDCLMGILKDKTVLYVTHQVEFLPAADLILVMQNGRVMQAGKFEELLKQNIGFEVL 850
Query: 838 VGAHQQALSALDSIEGGPVSERISMNKENGGMDTTNGV-----TMKEGNEDIQTDKVDEQ 892
VGAH +AL ++ SI E+ S N + G D T + T + +I T+ ++
Sbjct: 851 VGAHNEALDSILSI------EKSSRNFKEGSKDDTASIAESLQTHCDSEHNISTENKKKE 904
Query: 893 YYIPSARELSRLVGVCKAPVIQHFSETISG 922
+ E + GV V + T+ G
Sbjct: 905 AKLVQDEETEK--GVIGKEVYLAYLTTVKG 932
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q7DM58|AB4C_ARATH ABC transporter C family member 4 OS=Arabidopsis thaliana GN=ABCC4 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 574 bits (1479), Expect = e-162, Method: Compositional matrix adjust.
Identities = 315/747 (42%), Positives = 460/747 (61%), Gaps = 29/747 (3%)
Query: 124 QQRF-----PLLLRLWWGFYLCLSCYCLVSDIVLYAQHVSLSVHYLVSDVVSVISGFVFC 178
Q+RF PL LR++W L+ V+ I + + S+ DV S F F
Sbjct: 156 QKRFAALNHPLSLRIYWISSFVLTSLFAVTGIFHFLSDAATSLR--AEDVASF---FSFP 210
Query: 179 YVGFL--KRDKGEDTLLLQETLLDGDSSIGNGEVSSIKSRGTDNVTPYSNASLFSVLTFS 236
FL +G L+ ET +S + S++ +DNV+ Y++AS+FS +
Sbjct: 211 LTAFLLIASVRGITGLVTAET----NSPTKPSDAVSVEK--SDNVSLYASASVFSKTFWL 264
Query: 237 WMGSLISLGNKKTLDLEDVPQLDSGDSVVGCFPIFRNKLEANRVEGNKVTAFKLTKALFF 296
WM L+S G K L LE VP L +F E++ + ++ ++ + L
Sbjct: 265 WMNPLLSKGYKSPLTLEQVPTLSPEHKAERLALLF----ESSWPKPSENSSHPIRTTLLR 320
Query: 297 SAWKEIVFTAILALLYTLANYVGPYLIDTFVQYLNGEREFKNEGYVLVSTFFVAKIVECL 356
WKEI+FTAILA++ YVGP LI +FV + +G+R +GY LV VAK VE L
Sbjct: 321 CFWKEILFTAILAIVRLGVMYVGPVLIQSFVDFTSGKRSSPWQGYYLVLILLVAKFVEVL 380
Query: 357 AQRHWMFRLQVAGIKMRSVLVSMVYNKGLTLSCQAKQSYTSGEIINFMTVDAERIGDFGW 416
+ F Q G+ +RS L++ +Y KGL L+ A+Q++ G+I+N+M VDA+++ D
Sbjct: 381 TTHQFNFDSQKLGMLIRSTLITALYKKGLKLTGSARQNHGVGQIVNYMAVDAQQLSDMML 440
Query: 417 YMHDPWLVILQVSLALLILYKNLGLASIAALFATVLIMLTNFPLGRLQEN--FQDKLMGS 474
+H WL+ LQV++AL++LY +LG + I A+ + + F L Q N +Q LMG+
Sbjct: 441 QLHAIWLMPLQVTVALVLLYGSLGASVITAVIGLTGVFV--FILLGTQRNNGYQFSLMGN 498
Query: 475 KDKRMKVTSEILRNMRILKLQGWEMKFLSKIIELRKIEAGWLKKFLYTGAMTSFVFWGAP 534
+D RMK T+E+L MR++K Q WE F +I++ R +E GWL KFLY+ A V W P
Sbjct: 499 RDSRMKATNEMLNYMRVIKFQAWENHFNKRILKFRDMEFGWLSKFLYSIAGNIIVLWSTP 558
Query: 535 TFVSVATFGACMLLGIPLESGKILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIASF 594
+S TF + LG+ L++G + + F+ILQEPI P ++ + Q +SL R+ S+
Sbjct: 559 VLISALTFATALALGVKLDAGTVFTTTTIFKILQEPIRTFPQSMISLSQAMISLGRLDSY 618
Query: 595 LCLDDLQSDVVEKHPRGSSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTV 654
+ +L D VE+ TA+E+ DG+F+WD N P L DIN KV G A+ GTV
Sbjct: 619 MMSKELSEDAVERALGCDGNTAVEVRDGSFSWDDEDNEPALSDINFKVKKGELTAIVGTV 678
Query: 655 GSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGNIEDNILFGKPMDREKYDRV 714
GSGKSSLL+ +LGE+ +ISG +++CG+ YVAQ+ WI++G ++DNILFG PM REKY++V
Sbjct: 679 GSGKSSLLASVLGEMHRISGQVRVCGSTGYVAQTSWIENGTVQDNILFGLPMVREKYNKV 738
Query: 715 LEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDA 774
L CSL+KDL+++ FGD+T IGERGINLSGGQKQRIQ+ARA+YQ+ D+YL DD FSAVDA
Sbjct: 739 LNVCSLEKDLQMMEFGDKTEIGERGINLSGGQKQRIQLARAVYQECDVYLLDDVFSAVDA 798
Query: 775 HTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSGTDF 834
HTGS +FK+ + G L+ KTV+ VTHQV+FL D ILVM+DGKI ++GKY+++++SG DF
Sbjct: 799 HTGSDIFKKCVRGALKGKTVLLVTHQVDFLHNVDCILVMRDGKIVESGKYDELVSSGLDF 858
Query: 835 MVLVGAHQQALSALDSIEGGPVSERIS 861
LV AH+ ++++ +E G S ++
Sbjct: 859 GELVAAHE---TSMELVEAGADSAAVA 882
|
Involved in the regulation of stomatal aperture. May function as a high-capacity pump for folates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q7FB56|AB15C_ARATH Putative ABC transporter C family member 15 OS=Arabidopsis thaliana GN=ABCC15 PE=5 SV=2 | Back alignment and function description |
|---|
Score = 568 bits (1465), Expect = e-161, Method: Compositional matrix adjust.
Identities = 263/406 (64%), Positives = 332/406 (81%)
Query: 891 EQYYIPSARELSRLVGVCKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPK 950
++YY P+ RELSR+ GV +AP++ HF+E+++G+TTIR+FDQ RF +N+ L+D +SRP
Sbjct: 638 QRYYTPTERELSRMSGVERAPILHHFAESLAGATTIRAFDQRDRFISSNLVLIDSHSRPW 697
Query: 951 FHIAGAMEWLCFRLDMLSSLTFAFSLVLLISIPKGVIEPAIAGLAVTYGLNLNMLQAWVI 1010
FH+A AMEWL FRL++LS FAFSLVLL+++P+GVI P+IAGL VTYGL+LN+LQA VI
Sbjct: 698 FHVASAMEWLSFRLNLLSHFVFAFSLVLLVTLPEGVINPSIAGLGVTYGLSLNVLQATVI 757
Query: 1011 WNLCNLENKIISVERILQYTCISSEPPLVIEESRPDCSWPTHGEVDILNLQVRYAPHLPL 1070
WN+CN ENK+ISVERILQ++ I SE PLVI++ RP +WP G + +LQVRYA H P
Sbjct: 758 WNICNAENKMISVERILQHSKIPSEAPLVIDDQRPLDNWPNVGSIVFRDLQVRYAEHFPA 817
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS 1130
VL+ +TC FPGG K G+VGRTGSGKSTLIQ LFRIVEP+ G IVID ++I+ IGLHDLRS
Sbjct: 818 VLKNITCAFPGGKKIGVVGRTGSGKSTLIQALFRIVEPSHGTIVIDNVDITKIGLHDLRS 877
Query: 1131 RLSIIPQDPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGE 1190
RL IIPQD +F+GT+R NLDPL +Y D EIWEALDKCQLGD +R K+ KLD+ V ENGE
Sbjct: 878 RLGIIPQDNALFDGTIRLNLDPLAQYTDREIWEALDKCQLGDVIRAKDEKLDATVVENGE 937
Query: 1191 NWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRI 1250
NWS+GQRQLVCLGRVLLKKS +LVLDEATASVD+ATD +IQ+ + Q F D TV+TIAHRI
Sbjct: 938 NWSVGQRQLVCLGRVLLKKSNILVLDEATASVDSATDGVIQKIINQEFKDRTVVTIAHRI 997
Query: 1251 TSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLVAEYTQRSS 1296
+VI+SD+VL+LS G I E+DSP KLL+ + S F++L+ EY+ RS+
Sbjct: 998 HTVIESDLVLVLSDGRIAEFDSPAKLLQREDSFFSKLIKEYSLRSN 1043
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9LZJ5|AB14C_ARATH ABC transporter C family member 14 OS=Arabidopsis thaliana GN=ABCC14 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 562 bits (1448), Expect = e-159, Method: Compositional matrix adjust.
Identities = 308/803 (38%), Positives = 469/803 (58%), Gaps = 17/803 (2%)
Query: 61 KLILFCCFAVSVFNLVLCLLDYFSWFGNDWSGDKLV-TLADLVLRTLGWGAICVYLHSQF 119
K + +S +LVLC+ +F+ + KLV TL L+ + LH +
Sbjct: 98 KTTVVVTIVLSFCSLVLCVSAFFT----TRTKLKLVDTLFWLIHAVTNVVIAVLVLHLKR 153
Query: 120 FNSGQQRFPLLLRLWWGFYLCLSCYCLVSDIVLYAQHVSLSVHYLVSDVVSVISGFVFCY 179
F S PL LR++W F ++ VS I+ + DV S IS F
Sbjct: 154 FASPSH--PLTLRIYWVFNFVVTTLFTVSGILHLLSDDPAAASLRADDVASFIS-FPLTA 210
Query: 180 VGFLKRDKGEDTLLLQETLLDGDSSIGNGEVSSIKSRGTDNVTPYSNASLFSVLTFSWMG 239
V L KG +++ + + + + + ++NV+ Y++AS S + WM
Sbjct: 211 VLLLVSIKGSTGVVVTTS-----NVTAPAKSNDVVVEKSENVSLYASASFISKTFWLWMN 265
Query: 240 SLISLGNKKTLDLEDVPQLDSGDSVVGCFPIFRNKLEANRVEGNKVTAFKLTKALFFSAW 299
L+ G K L+L+ VP L +F +K + + N + T F W
Sbjct: 266 PLLRKGYKSPLNLDQVPTLSPEHRAEKLATLFESKWP--KPQENSRNPVRTTLIRCF--W 321
Query: 300 KEIVFTAILALLYTLANYVGPYLIDTFVQYLNGEREFKNEGYVLVSTFFVAKIVECLAQR 359
KEI FTA+LA++ YVGP LI +FV + +G+R ++GY LV +AK VE L+
Sbjct: 322 KEIAFTAVLAIIRLSVIYVGPVLIQSFVDFTSGKRSSPSQGYYLVLILLIAKFVEVLSTH 381
Query: 360 HWMFRLQVAGIKMRSVLVSMVYNKGLTLSCQAKQSYTSGEIINFMTVDAERIGDFGWYMH 419
+ F Q G+ +RS L++ +Y KGL L+ A+Q++ G+I+N+M VDA+++ D +H
Sbjct: 382 QFNFNSQKLGMLIRSTLITALYKKGLKLTGSARQNHGVGQIVNYMAVDAQQLSDMMLQLH 441
Query: 420 DPWLVILQVSLALLILYKNLGLASIAALFATVLIMLTNFPLGRLQENFQDKLMGSKDKRM 479
WL+ LQV+ A+++LY LG + + + I + + +Q LM ++D RM
Sbjct: 442 AIWLMPLQVAAAIVLLYNTLGPSVVTTVIGLTGIFVFILLGTKRNNRYQFSLMMNRDSRM 501
Query: 480 KVTSEILRNMRILKLQGWEMKFLSKIIELRKIEAGWLKKFLYTGAMTSFVFWGAPTFVSV 539
K T+E+L MR++K Q WE F +I++ R++E GWL KFLY+ A V W P +S
Sbjct: 502 KATNEMLNYMRVIKFQAWEDHFNERILKFREMEFGWLSKFLYSIAGNIIVLWSTPVLISA 561
Query: 540 ATFGACMLLGIPLESGKILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIASFLCLDD 599
TF + LG+ L++G + + F+ILQEPI P ++ + Q +SL R+ +++ +
Sbjct: 562 LTFTTAVFLGVKLDAGTVFTTTTIFKILQEPIRTFPQSMISLSQAMISLGRLDAYMMSRE 621
Query: 600 LQSDVVEKHPRGSSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKS 659
L + VE+ A+EI DG+F+WD + P + +IN +V G A+ GTVGSGKS
Sbjct: 622 LSEETVERSQGCDGNVAVEIKDGSFSWDDEDDEPAIENINFEVKKGELAAIVGTVGSGKS 681
Query: 660 SLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACS 719
SLL+ +LGE+ K+SG +++CGT AYVAQ+ WIQ+G ++DNILFG PM+R KY+ VL+ C
Sbjct: 682 SLLASVLGEMHKLSGKVRVCGTTAYVAQTSWIQNGTVQDNILFGLPMNRSKYNEVLKVCC 741
Query: 720 LKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSH 779
L+KD++I+ FGDQT IGERGINLSGGQKQRIQ+ARA+YQ++D+YL DD FSAVDAHTGS
Sbjct: 742 LEKDMQIMEFGDQTEIGERGINLSGGQKQRIQLARAVYQESDVYLLDDVFSAVDAHTGSD 801
Query: 780 LFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSGTDFMVLVG 839
+FK+ + G L+ KT++ VTHQV+FL D ILVM+DG I Q+GKY+++++SG DF LV
Sbjct: 802 IFKKCVRGALKGKTILLVTHQVDFLHNVDRILVMRDGMIVQSGKYDELVSSGLDFGELVA 861
Query: 840 AHQQALSALDSIEGGPVSERISM 862
AH+ ++ +++ + + M
Sbjct: 862 AHETSMELVEAGSASATAANVPM 884
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9LYS2|AB10C_ARATH ABC transporter C family member 10 OS=Arabidopsis thaliana GN=ABCC10 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 560 bits (1443), Expect = e-158, Method: Compositional matrix adjust.
Identities = 292/668 (43%), Positives = 417/668 (62%), Gaps = 11/668 (1%)
Query: 179 YVGFLKRDKGEDTLLLQETLLDGDSSIGNGEVSSIKSRGTDNVTPYSNASLFSVLTFSWM 238
Y G+ + GE +L E L GDS+ G E + +R V+ ++ A LFS L+F W+
Sbjct: 169 YKGYRFDESGESSLY--EPLNAGDSN-GFSEKADFDNR----VSQFAKAGLFSTLSFWWL 221
Query: 239 GSLISLGNKKTLDLEDVPQLDSGDSVVGCFPIFR-NKLEANRVEGNKVTAFKLTKALFFS 297
SLI GN K L+ ED+P+L + C+ +F N +E R G+ + K
Sbjct: 222 NSLIKRGNVKDLEEEDIPELRKEERAETCYSLFEENLIEQKRRLGSSCQP-SILKVTVLC 280
Query: 298 AWKEIVFTAILALLYTLANYVGPYLIDTFVQYLNGEREFKNEGYVLVSTFFVAKIVECLA 357
W+E++ + A + +A GP L++ F+ G F+ EG VL F +K++E L+
Sbjct: 281 VWRELLTSGFFAFMKIVAVSAGPLLLNAFILVAEGNASFRYEGLVLAVLLFFSKMIESLS 340
Query: 358 QRHWMFRLQVAGIKMRSVLVSMVYNKGLTLSCQAKQSYTSGEIINFMTVDAERIGDFGWY 417
QR W FR ++ G+++RS+L + + K L L+ ++ ++ EI+N+ TVDA RIG+F ++
Sbjct: 341 QRQWYFRCRIVGLRVRSLLTAAINKKQLRLNNSSRLIHSGSEIMNYATVDAYRIGEFPYW 400
Query: 418 MHDPWLVILQVSLALLILYKNLGLASIAALFATVLIMLTNFPLGRLQENFQDKLMGSKDK 477
H W Q+ +AL IL+ ++G+A+ +AL +L +L N P+ +LQ FQ +LM S+D+
Sbjct: 401 FHQLWTTSFQLLIALGILFHSVGVATFSALAVIILTVLCNAPIAKLQNKFQSELMTSQDE 460
Query: 478 RMKVTSEILRNMRILKLQGWEMKFLSKIIELRKIEAGWLKKFLYTGAMTSFVFWGAPTFV 537
R+K +E L NM++LKL WE F I +LR IE LK A + +FW +P FV
Sbjct: 461 RLKACNESLVNMKVLKLYAWESHFKKVIEKLRNIELKSLKAVQMRKAYNAVLFWSSPVFV 520
Query: 538 SVATFGACMLLGIPLESGKILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIASFLCL 597
S ATF C L IPL + + + +AT R++Q+P+ +PD I + IQ KV+ RIA+FL
Sbjct: 521 SAATFATCYFLDIPLRASNVFTFVATLRLVQDPVRMIPDVIGVTIQAKVAFSRIATFLEA 580
Query: 598 DDLQSDVVEKHPRGS-SETAIEIVDGNFAWD-ISSNNPTLRDINLKVFHGMRVAVCGTVG 655
+LQ + R ++ AI I +F+W+ S P LR+++L+V G +VAVCG VG
Sbjct: 581 PELQGGERRRKQRSEGNQNAIIIKSASFSWEEKGSTKPNLRNVSLEVKFGEKVAVCGEVG 640
Query: 656 SGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGNIEDNILFGKPMDREKYDRVL 715
SGKS+LL+ ILGE P +SGT+ GT AYV+Q+ WIQ+G I DNILFG MD +Y +
Sbjct: 641 SGKSTLLAAILGETPCVSGTIDFYGTIAYVSQTAWIQTGTIRDNILFGGVMDEHRYRETI 700
Query: 716 EACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAH 775
+ SL KDLE+L GDQT IGERG+NLSGGQKQRIQ+ARALYQDADIYL DDPFSAVDAH
Sbjct: 701 QKSSLDKDLELLPDGDQTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAH 760
Query: 776 TGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSGTDFM 835
T S LF+E ++ L K V+ VTHQV+FLPA D +L+M DG+IT+A Y ++L DF
Sbjct: 761 TASSLFQEYVMDALAGKAVLLVTHQVDFLPAFDSVLLMSDGEITEADTYQELLARSRDFQ 820
Query: 836 VLVGAHQQ 843
LV AH++
Sbjct: 821 DLVNAHRE 828
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q8LGU1|AB8C_ARATH ABC transporter C family member 8 OS=Arabidopsis thaliana GN=ABCC8 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 533 bits (1373), Expect = e-150, Method: Compositional matrix adjust.
Identities = 283/631 (44%), Positives = 398/631 (63%), Gaps = 12/631 (1%)
Query: 225 SNASLFSVLTFSWMGSLISLGNKKTLDLEDVPQLDSGDSVVGCFPIFRNKL------EAN 278
+ A FS+L+FSWM L+SLG KK L ED+P + D + F E++
Sbjct: 204 ATAGFFSILSFSWMNPLLSLGFKKPLSPEDIPSVVPEDEAQLAYKKFSQAWDTLLGDESS 263
Query: 279 RVEGNKVTAFKLTKALFFSAWKEIVFTAILALLYTLANYVGPYLIDTFVQYLNGEREFKN 338
E N V F+ ++F KE +F A+ A L T A P ++ FV Y N +
Sbjct: 264 TKERNLV--FRAVVKVYF---KENIFIAVFAFLRTFAVVSLPLMLYVFVDYANSDHRDLR 318
Query: 339 EGYVLVSTFFVAKIVECLAQRHWMFRLQVAGIKMRSVLVSMVYNKGLTLSCQAKQSYTSG 398
G+ ++ + K+VE L RHW F + +G+++RS L+ Y K L LS ++ ++SG
Sbjct: 319 NGFFNLACLVMLKLVESLTMRHWYFASRRSGMRIRSALMVAAYKKQLKLSSLGRKRHSSG 378
Query: 399 EIINFMTVDAERIGDFGWYMHDPWLVILQVSLALLILYKNLGLASIAALFATVLIMLTNF 458
EI+N++ VDA R+G+F W+ H W + LQ+ L+ +L+ +G + L +L L N
Sbjct: 379 EIVNYIAVDAYRMGEFLWWFHSGWSLSLQLLLSTAVLFGVVGAGAFPGLILLLLCGLLNL 438
Query: 459 PLGRLQENFQDKLMGSKDKRMKVTSEILRNMRILKLQGWEMKFLSKIIELRKIEAGWLKK 518
P ++ +N Q + M ++DKR++ TSEIL +M+++KLQ WE +F KI R E WL K
Sbjct: 439 PFAKMLQNCQTQFMIAQDKRLRSTSEILNSMKVIKLQSWEDEFKKKIESCRDDEFTWLAK 498
Query: 519 FLYTGAMTSFVFWGAPTFVSVATFGACMLL-GIPLESGKILSALATFRILQEPIYNLPDT 577
T A SF++W +PT VS F C LL PL + I + LAT R++ EP+ +PD
Sbjct: 499 AQLTKAFGSFLYWMSPTIVSSVVFLGCALLKSAPLNASTIFTVLATLRVMSEPVKIIPDA 558
Query: 578 ISMIIQTKVSLDRIASFLCLDDLQSDVVEKHPRGSSETAIEIVDGNFAWDISSNNPTLRD 637
IS IIQ VS R+ +FL D+L+ D +E+ +S TA++I GNF W+ + PTLR+
Sbjct: 559 ISAIIQGNVSFQRLNNFLLDDELKMDEIERSGLDASGTAVDIQVGNFGWEPETKIPTLRN 618
Query: 638 INLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGNIE 697
I+L++ HG +VAVCG VG+GKSSLL +LGE+PK+SGT+K+ G+ AYV+Q+ WIQSG I
Sbjct: 619 IHLEIKHGQKVAVCGPVGAGKSSLLHAVLGEIPKVSGTVKVFGSIAYVSQTSWIQSGTIR 678
Query: 698 DNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALY 757
DNIL+GKPM+ +Y+ ++AC+L KD+ GD T IG+RGINLSGGQKQRIQ+ARA+Y
Sbjct: 679 DNILYGKPMESRRYNAAIKACALDKDMNGFGHGDLTEIGQRGINLSGGQKQRIQLARAVY 738
Query: 758 QDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGK 817
DAD+YL DDPFSAVDAHT LF + + L+ KTVI VTHQVEFL D ILVM++G
Sbjct: 739 ADADVYLLDDPFSAVDAHTAGVLFHKCVEDSLKEKTVILVTHQVEFLSEVDQILVMEEGT 798
Query: 818 ITQAGKYNDILNSGTDFMVLVGAHQQALSAL 848
ITQ+GKY ++L GT F LV AH A++ L
Sbjct: 799 ITQSGKYEELLMMGTAFQQLVNAHNDAVTVL 829
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1300 | ||||||
| 125581698 | 1198 | hypothetical protein OsJ_06301 [Oryza sa | 0.806 | 0.874 | 0.6 | 0.0 | |
| 297721081 | 1095 | Os02g0288733 [Oryza sativa Japonica Grou | 0.806 | 0.957 | 0.596 | 0.0 | |
| 125539019 | 1198 | hypothetical protein OsI_06794 [Oryza sa | 0.806 | 0.874 | 0.599 | 0.0 | |
| 224061172 | 1488 | multidrug resistance protein ABC transpo | 0.679 | 0.593 | 0.720 | 0.0 | |
| 359494293 | 1488 | PREDICTED: ABC transporter C family memb | 0.676 | 0.590 | 0.707 | 0.0 | |
| 359494168 | 1485 | PREDICTED: ABC transporter C family memb | 0.672 | 0.588 | 0.700 | 0.0 | |
| 359494289 | 1488 | PREDICTED: ABC transporter C family memb | 0.676 | 0.590 | 0.7 | 0.0 | |
| 356553519 | 1494 | PREDICTED: ABC transporter C family memb | 0.674 | 0.587 | 0.689 | 0.0 | |
| 356499431 | 2054 | PREDICTED: ABC transporter C family memb | 0.674 | 0.426 | 0.688 | 0.0 | |
| 359494291 | 2021 | PREDICTED: ABC transporter C family memb | 0.656 | 0.422 | 0.710 | 0.0 |
| >gi|125581698|gb|EAZ22629.1| hypothetical protein OsJ_06301 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 1293 bits (3346), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 645/1075 (60%), Positives = 820/1075 (76%), Gaps = 27/1075 (2%)
Query: 224 YSNASLFSVLTFSWMGSLISLGNKKTLDLEDVPQLDSGDSVVGCFPIFRNKLEANRVEGN 283
+++A FS++TFSWMG L+ LG +K LDL+DVP LD DSV G P F KL + G
Sbjct: 146 FTDAGFFSIITFSWMGPLLDLGRRKALDLDDVPTLDDNDSVQGILPNFEAKLVSVSGSGK 205
Query: 284 --KVTAFKLTKALFFSAWKEIVFTAILALLYTLANYVGPYLIDTFVQYLNGEREFKNEGY 341
VT L KAL + WK I+FTA+ ALL T+++YVGPYLI+ FV YLN + EGY
Sbjct: 206 YTDVTTINLVKALVLTTWKLILFTAVCALLRTVSSYVGPYLIEYFVDYLNRSPQSAKEGY 265
Query: 342 VLVSTFFVAKIVECLAQRHWMFRLQVAGIKMRSVLVSMVYNKGLTLSCQAKQSYTSGEII 401
+LV +F VA+ +E L+ RH +FR Q G+++RS LV+++Y KGL+LS Q+++S +SGEII
Sbjct: 266 ILVLSFVVAQFIEGLSSRHLLFRSQQLGVRVRSALVAVIYQKGLSLSNQSRESSSSGEII 325
Query: 402 NFMTVDAERIGDFGWYMHDPWLVILQVSLALLILYKNLGLASIAALFATVLIMLTNFPLG 461
N +++DAER+ DF W +H+ WL +Q+ LA+LILY LGLA+ AAL ATVL ML N P+G
Sbjct: 326 NAVSLDAERVADFNWSIHELWLFPVQIILAMLILYSTLGLAAFAALAATVLTMLANLPIG 385
Query: 462 RLQENFQDKLMGSKDKRMKVTSEILRNMRILKLQGWEMKFLSKIIELRKIEAGWLKKFLY 521
R+Q+N+Q+K+M +KD RM+ SE+LRNMRILKLQGWEM LSKI+ELRK E WLKK +Y
Sbjct: 386 RIQQNYQEKMMDAKDARMRAMSEMLRNMRILKLQGWEM-VLSKIMELRKEEMHWLKKDVY 444
Query: 522 TGAMTSFVFWGAPTFVSVATFGACMLLGIPLESGKILSALATFRILQEPIYNLPDTISMI 581
T M VF+GAP FV++ TFG+C+LLGIPLE+GK+LSALATFR LQ PI ++PDT+S+I
Sbjct: 445 TSVMLISVFFGAPAFVAMVTFGSCLLLGIPLETGKVLSALATFRQLQGPINSIPDTVSVI 504
Query: 582 IQTKVSLDRIASFLCLDDLQSDVVEKHPRGSSETAIEIVDGNFAWDISSNNPTLRDINLK 641
IQTKVSLDRI SF+ L++L SDVV K RG+++ +IE+ +G F+W+ S PTLR++N +
Sbjct: 505 IQTKVSLDRICSFMHLEELSSDVVTKLLRGTTDVSIEVRNGQFSWNTPSEVPTLRNLNFR 564
Query: 642 VFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGNIEDNIL 701
+ GMRVA+CGTVGSGKSSLLSCILGE+P++SG ++ CG AYV+QSPWIQSG IE NIL
Sbjct: 565 IRQGMRVAICGTVGSGKSSLLSCILGEIPRLSGDVQTCGRIAYVSQSPWIQSGTIEHNIL 624
Query: 702 FGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDAD 761
F + RE+Y++VLEAC LKKD+EIL GDQT+IGERGINLSGGQKQR+QIARALYQDAD
Sbjct: 625 FDTKLHRERYEKVLEACCLKKDMEILPLGDQTIIGERGINLSGGQKQRMQIARALYQDAD 684
Query: 762 IYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQA 821
I+LFDDPFSAVDAHTG HLFKE LLGLL SKTV+YVTH VEFLP+A+ I+ +I++
Sbjct: 685 IFLFDDPFSAVDAHTGLHLFKECLLGLLASKTVVYVTHHVEFLPSANAIMWKYAFQISKR 744
Query: 822 GKYNDILNSGTDFMVLVGAHQQALSALDSIEGGPVSERISMNKENGGMDTTNGVTMKEGN 881
+++ ++ L + S + V RI D G +
Sbjct: 745 --------------MIIKEQKKGLFKMASSDQSTVDTRI--------FDLM-GYVLFPAI 781
Query: 882 EDIQT-DKVDEQYYIPSARELSRLVGVCKAPVIQHFSETISGSTTIRSFDQESRFRDTNM 940
E + T + QYYI AREL RL GVC+APV+QHF+E+++GS IR F +E +F +
Sbjct: 782 ELLGTIILMSRQYYIDGARELQRLTGVCRAPVMQHFAESVAGSNIIRCFGKEIQFINAVS 841
Query: 941 KLVDGYSRPKFHIAGAMEWLCFRLDMLSSLTFAFSLVLLISIPKGVIEPAIAGLAVTYGL 1000
+D SRP + A +MEWLCFRLD+LSS FAF+L+LL+++P +I+P AGLAVTYGL
Sbjct: 842 HFMDNLSRPSLYNAASMEWLCFRLDILSSFIFAFALILLVTLPAALIDPKTAGLAVTYGL 901
Query: 1001 NLNMLQAWVIWNLCNLENKIISVERILQYTCISSEPPLVIEESRPDCSWPTHGEVDILNL 1060
+LNMLQ W I LC+LEN++ISVERI QY I SEPPL I +SRP+C WPT+GE+++ NL
Sbjct: 902 SLNMLQGWAIAVLCSLENRMISVERIFQYMAIPSEPPLTISKSRPNCRWPTNGEIELRNL 961
Query: 1061 QVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINI 1120
VRYA LP VL+GLTCT P G++TGIVGRTG+GKSTLIQ LFRIV+P G+++IDG++I
Sbjct: 962 HVRYATQLPFVLKGLTCTLPRGLRTGIVGRTGNGKSTLIQALFRIVDPCIGQVLIDGLDI 1021
Query: 1121 SSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGK 1180
+IGLHDLR+RLSIIPQDP MFEGT+RNN+DPLEEY DE+IWEALD C LGDEVR + K
Sbjct: 1022 CTIGLHDLRTRLSIIPQDPVMFEGTLRNNIDPLEEYSDEQIWEALDSCHLGDEVRKSDLK 1081
Query: 1181 LDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSD 1240
LDS VTENG NWS GQRQLVCLGRV+LKK K+LVLDEAT+SVD TDNLIQ+TL+Q FS+
Sbjct: 1082 LDSTVTENGSNWSAGQRQLVCLGRVVLKKRKILVLDEATSSVDPITDNLIQKTLKQQFSE 1141
Query: 1241 CTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLVAEYTQRS 1295
CTVITIAHRITSV+DS+ V+L+ +G I E DSP KLLE+ S F++LV+EYT+ S
Sbjct: 1142 CTVITIAHRITSVLDSEKVILMDNGKIAEADSPAKLLEDNLSLFSKLVSEYTKGS 1196
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297721081|ref|NP_001172903.1| Os02g0288733 [Oryza sativa Japonica Group] gi|255670805|dbj|BAH91632.1| Os02g0288733 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 1291 bits (3341), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 645/1081 (59%), Positives = 820/1081 (75%), Gaps = 33/1081 (3%)
Query: 224 YSNASLFSVLTFSWMGSLISLGNKKTLDLEDVPQLDSGDSVVGCFPIFRNKLEANRVEG- 282
+++A FS++TFSWMG L+ LG +K LDL+DVP LD DSV G P F KL + G
Sbjct: 37 FTDAGFFSIITFSWMGPLLDLGRRKALDLDDVPTLDDNDSVQGILPNFEAKLVSVSGSGK 96
Query: 283 -NKVTAFKLTKALFFSAWKEIVFTAILALLYTLANYVGPYLIDTFVQYLNGEREFKNEGY 341
VT L KAL + WK I+FTA+ ALL T+++YVGPYLI+ FV YLN + EGY
Sbjct: 97 YTDVTTINLVKALVLTTWKLILFTAVCALLRTVSSYVGPYLIEYFVDYLNRSPQSAKEGY 156
Query: 342 VLVSTFFVAKIVECLAQRHWMFRLQVAGIKMRSVLVSMVYNKGLTLSCQAKQSYTSGEII 401
+LV +F VA+ +E L+ RH +FR Q G+++RS LV+++Y KGL+LS Q+++S +SGEII
Sbjct: 157 ILVLSFVVAQFIEGLSSRHLLFRSQQLGVRVRSALVAVIYQKGLSLSNQSRESSSSGEII 216
Query: 402 NFMTVDAERIGDFGWYMHDPWLVILQVSLALLILYKNLGLASIAALFATVLIMLTNFPLG 461
N +++DAER+ DF W +H+ WL +Q+ LA+LILY LGLA+ AAL ATVL ML N P+G
Sbjct: 217 NAVSLDAERVADFNWSIHELWLFPVQIILAMLILYSTLGLAAFAALAATVLTMLANLPIG 276
Query: 462 RLQENFQDKLMGSKDKRMKVTSEILRNMRILKLQGWEMKFLSKIIELRKIEAGWLKKFLY 521
R+Q+N+Q+K+M +KD RM+ SE+LRNMRILKLQGWEM LSKI+ELRK E WLKK +Y
Sbjct: 277 RIQQNYQEKMMDAKDARMRAMSEMLRNMRILKLQGWEM-VLSKIMELRKEEMHWLKKDVY 335
Query: 522 TGAMTSFVFWGAPTFVSVATFGACMLLGIPLESGKILSALATFRILQEPIYNLPDTISMI 581
T M VF+GAP FV++ TFG+C+LLGIPLE+GK+LSALATFR LQ PI ++PDT+S+I
Sbjct: 336 TSVMLISVFFGAPAFVAMVTFGSCLLLGIPLETGKVLSALATFRQLQGPINSIPDTVSVI 395
Query: 582 IQTKVSLDRIASFLCLDDLQSDVVEKHPRGSSETAIEIVDGNFAWDISSNNPTLRDINLK 641
IQTKVSLDRI SF+ L++L SDVV K RG+++ +IE+ +G F+W+ S PTLR++N +
Sbjct: 396 IQTKVSLDRICSFMHLEELSSDVVTKLLRGTTDVSIEVRNGQFSWNTPSEVPTLRNLNFR 455
Query: 642 VFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGNIEDNIL 701
+ GMRVA+CGTVGSGKSSLLSCILGE+P++SG ++ CG AYV+QSPWIQSG IE NIL
Sbjct: 456 IRQGMRVAICGTVGSGKSSLLSCILGEIPRLSGDVQTCGRIAYVSQSPWIQSGTIEHNIL 515
Query: 702 FGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDAD 761
F + RE+Y++VLEAC LKKD+EIL GDQT+IGERGINLSGGQKQR+QIARALYQDAD
Sbjct: 516 FDTKLHRERYEKVLEACCLKKDMEILPLGDQTIIGERGINLSGGQKQRMQIARALYQDAD 575
Query: 762 IYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQA 821
I+LFDDPFSAVDAHTG HLFKE LLGLL SKTV+YVTH VEFLP+A+ I+ +I++
Sbjct: 576 IFLFDDPFSAVDAHTGLHLFKECLLGLLASKTVVYVTHHVEFLPSANAIMWKYAFQISKR 635
Query: 822 GKYNDILNSGTDFMVLVGAHQQALSALDSIEGGPVSERISMNKENGGMDTTNGVTMKEGN 881
+++ ++ L + S + V RI D G +
Sbjct: 636 --------------MIIKEQKKGLFKMASSDQSTVDTRI--------FDLM-GYVLFPAI 672
Query: 882 EDIQTDKVDE-------QYYIPSARELSRLVGVCKAPVIQHFSETISGSTTIRSFDQESR 934
E + T + QYYI AREL RL GVC+APV+QHF+E+++GS IR F +E +
Sbjct: 673 ELLGTIILMSRVAWPVFQYYIDGARELQRLTGVCRAPVMQHFAESVAGSNIIRCFGKEIQ 732
Query: 935 FRDTNMKLVDGYSRPKFHIAGAMEWLCFRLDMLSSLTFAFSLVLLISIPKGVIEPAIAGL 994
F + +D SRP + A +MEWLCFRLD+LSS FAF+L+LL+++P +I+P AGL
Sbjct: 733 FINAVSHFMDNLSRPSLYNAASMEWLCFRLDILSSFIFAFALILLVTLPAALIDPKTAGL 792
Query: 995 AVTYGLNLNMLQAWVIWNLCNLENKIISVERILQYTCISSEPPLVIEESRPDCSWPTHGE 1054
AVTYGL+LNMLQ W I LC+LEN++ISVERI QY I SEPPL I +SRP+C WPT+GE
Sbjct: 793 AVTYGLSLNMLQGWAIAVLCSLENRMISVERIFQYMAIPSEPPLTISKSRPNCRWPTNGE 852
Query: 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIV 1114
+++ NL VRYA LP VL+GLTCT P G++TGIVGRTG+GKSTLIQ LFRIV+P G+++
Sbjct: 853 IELRNLHVRYATQLPFVLKGLTCTLPRGLRTGIVGRTGNGKSTLIQALFRIVDPCIGQVL 912
Query: 1115 IDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEV 1174
IDG++I +IGLHDLR+RLSIIPQDP MFEGT+RNN+DPLEEY DE+IWEALD C LGDEV
Sbjct: 913 IDGLDICTIGLHDLRTRLSIIPQDPVMFEGTLRNNIDPLEEYSDEQIWEALDSCHLGDEV 972
Query: 1175 RNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTL 1234
R + KLDS VTENG NWS GQRQLVCLGRV+LKK K+LVLDEAT+SVD TDNLIQ+TL
Sbjct: 973 RKSDLKLDSTVTENGSNWSAGQRQLVCLGRVVLKKRKILVLDEATSSVDPITDNLIQKTL 1032
Query: 1235 RQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLVAEYTQR 1294
+Q FS+CTVITIAHRITSV+DS+ V+L+ +G I E DSP KLLE+ S F++LV+EYT+
Sbjct: 1033 KQQFSECTVITIAHRITSVLDSEKVILMDNGKIAEADSPAKLLEDNLSLFSKLVSEYTKG 1092
Query: 1295 S 1295
S
Sbjct: 1093 S 1093
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|125539019|gb|EAY85414.1| hypothetical protein OsI_06794 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 1291 bits (3340), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 644/1075 (59%), Positives = 819/1075 (76%), Gaps = 27/1075 (2%)
Query: 224 YSNASLFSVLTFSWMGSLISLGNKKTLDLEDVPQLDSGDSVVGCFPIFRNKLEANRVEGN 283
+++A FS++TFSWMG L+ LG +K LDL+DVP LD DSV G P F KL + G
Sbjct: 146 FTDAGFFSIITFSWMGPLLDLGRRKALDLDDVPTLDDNDSVQGILPNFEAKLVSVSGSGK 205
Query: 284 --KVTAFKLTKALFFSAWKEIVFTAILALLYTLANYVGPYLIDTFVQYLNGEREFKNEGY 341
VT L KAL + WK I+FTA+ ALL T+++YVGPYLI+ FV YLN + EGY
Sbjct: 206 YTDVTTINLVKALVLTTWKLILFTAVCALLRTVSSYVGPYLIEYFVDYLNRSPQSAKEGY 265
Query: 342 VLVSTFFVAKIVECLAQRHWMFRLQVAGIKMRSVLVSMVYNKGLTLSCQAKQSYTSGEII 401
+LV +F VA+ +E L+ RH +FR Q G+++RS LV+++Y KGL+LS Q+++S +SGEII
Sbjct: 266 ILVLSFVVAQFIEGLSSRHLLFRSQQLGVRVRSALVAVIYQKGLSLSNQSRESSSSGEII 325
Query: 402 NFMTVDAERIGDFGWYMHDPWLVILQVSLALLILYKNLGLASIAALFATVLIMLTNFPLG 461
N +++DAER+ DF W +H+ WL +Q+ LA+LILY LGLA+ AAL ATVL ML N P+G
Sbjct: 326 NAVSLDAERVADFNWSIHELWLFPVQIILAMLILYSTLGLAAFAALAATVLTMLANLPIG 385
Query: 462 RLQENFQDKLMGSKDKRMKVTSEILRNMRILKLQGWEMKFLSKIIELRKIEAGWLKKFLY 521
R+Q+N+Q+K+M +KD RM+ SE+LRNMRILKLQGWEM LSKI+ELRK E WLKK +Y
Sbjct: 386 RIQQNYQEKMMDAKDARMRAMSEMLRNMRILKLQGWEM-VLSKIMELRKEEMHWLKKDVY 444
Query: 522 TGAMTSFVFWGAPTFVSVATFGACMLLGIPLESGKILSALATFRILQEPIYNLPDTISMI 581
T M VF+GAP FV++ TFG+C+LLGIPLE+GK+LSALATFR LQ PI ++PD +S+I
Sbjct: 445 TSVMLISVFFGAPAFVAMVTFGSCLLLGIPLETGKVLSALATFRQLQGPINSIPDIVSVI 504
Query: 582 IQTKVSLDRIASFLCLDDLQSDVVEKHPRGSSETAIEIVDGNFAWDISSNNPTLRDINLK 641
IQTKVSLDRI SF+ L++L SDVV K RG+++ +IE+ +G F+W+ S PTLR++N +
Sbjct: 505 IQTKVSLDRICSFMHLEELSSDVVTKLLRGTTDVSIEVRNGQFSWNTPSEVPTLRNLNFR 564
Query: 642 VFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGNIEDNIL 701
+ GMRVA+CGTVGSGKSSLLSCILGE+P++SG ++ CG AYV+QSPWIQSG IE NIL
Sbjct: 565 IRQGMRVAICGTVGSGKSSLLSCILGEIPRLSGDVQTCGRIAYVSQSPWIQSGTIEHNIL 624
Query: 702 FGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDAD 761
F + RE+Y++VLEAC LKKD+EIL GDQT+IGERGINLSGGQKQR+QIARALYQDAD
Sbjct: 625 FDTKLHRERYEKVLEACCLKKDMEILPLGDQTIIGERGINLSGGQKQRMQIARALYQDAD 684
Query: 762 IYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQA 821
I+LFDDPFSAVDAHTG HLFKE LLGLL SKTV+YVTH VEFLP+A+ I+ +I++
Sbjct: 685 IFLFDDPFSAVDAHTGLHLFKECLLGLLASKTVVYVTHHVEFLPSANAIMWKYAFQISKR 744
Query: 822 GKYNDILNSGTDFMVLVGAHQQALSALDSIEGGPVSERISMNKENGGMDTTNGVTMKEGN 881
+++ ++ L + S + V RI D G +
Sbjct: 745 --------------MIIKEQKKGLFKMASSDQSTVDTRI--------FDLM-GYVLFPAI 781
Query: 882 EDIQT-DKVDEQYYIPSARELSRLVGVCKAPVIQHFSETISGSTTIRSFDQESRFRDTNM 940
E + T + QYYI AREL RL GVC+APV+QHF+E+++GS IR F +E +F +
Sbjct: 782 ELLGTIILMSRQYYIDGARELQRLTGVCRAPVMQHFAESVAGSNIIRCFGKEIQFINAVS 841
Query: 941 KLVDGYSRPKFHIAGAMEWLCFRLDMLSSLTFAFSLVLLISIPKGVIEPAIAGLAVTYGL 1000
+D SRP + A +MEWLCFRLD+LSS FAF+L+LL+++P +I+P AGLAVTYGL
Sbjct: 842 HFMDNLSRPSLYNAASMEWLCFRLDILSSFIFAFALILLVTLPAALIDPKTAGLAVTYGL 901
Query: 1001 NLNMLQAWVIWNLCNLENKIISVERILQYTCISSEPPLVIEESRPDCSWPTHGEVDILNL 1060
+LNMLQ W I LC+LEN++ISVERI QY I SEPPL I +SRP+C WPT+GE+++ NL
Sbjct: 902 SLNMLQGWAIAVLCSLENRMISVERIFQYMAIPSEPPLTISKSRPNCRWPTNGEIELRNL 961
Query: 1061 QVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINI 1120
VRYA LP VL+GLTCT P G++TGIVGRTG+GKSTLIQ LFRIV+P G+++IDG++I
Sbjct: 962 HVRYATQLPFVLKGLTCTLPRGLRTGIVGRTGNGKSTLIQALFRIVDPCIGQVLIDGLDI 1021
Query: 1121 SSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGK 1180
+IGLHDLR+RLSIIPQDP MFEGT+RNN+DPLEEY DE+IWEALD C LGDEVR + K
Sbjct: 1022 CTIGLHDLRTRLSIIPQDPVMFEGTLRNNIDPLEEYSDEQIWEALDSCHLGDEVRKSDLK 1081
Query: 1181 LDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSD 1240
LDS VTENG NWS GQRQLVCLGRV+LKK K+LVLDEAT+SVD TDNLIQ+TL+Q FS+
Sbjct: 1082 LDSTVTENGSNWSAGQRQLVCLGRVVLKKRKILVLDEATSSVDPITDNLIQKTLKQQFSE 1141
Query: 1241 CTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLVAEYTQRS 1295
CTVITIAHRITSV+DS+ V+L+ +G I E DSP KLLE+ S F++LV+EYT+ S
Sbjct: 1142 CTVITIAHRITSVLDSEKVILMDNGKIAEADSPAKLLEDNLSLFSKLVSEYTKGS 1196
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224061172|ref|XP_002300362.1| multidrug resistance protein ABC transporter family [Populus trichocarpa] gi|222847620|gb|EEE85167.1| multidrug resistance protein ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1282 bits (3318), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 642/891 (72%), Positives = 742/891 (83%), Gaps = 8/891 (0%)
Query: 1 MYPGTEFLLKPAFLRGISGSLHLVLLLGLFVSWVWKKLRVGVSDSEGYKERF-KKKSVLR 59
M T FLLKP FLRG + SLHLVLLL LFVS+V KKLRVG +G KERF K
Sbjct: 1 MDSATYFLLKPIFLRGFTASLHLVLLLALFVSFVLKKLRVG-DGVQGSKERFSNNKRFFF 59
Query: 60 HKLILFCCFAVSVFNLVLCLLDYFSWFGNDWSGDKLVTLADLVLRTLGWGAICVYLHSQF 119
+K LFC VS NLVL L+ YF W+ N WS DKLVTL D VL L W A+ VYLH+Q
Sbjct: 60 YKQTLFCSLGVSSLNLVLSLVSYFYWYTNGWSDDKLVTLLDFVLTALSWAALSVYLHTQL 119
Query: 120 FNSGQQRFPLLLRLWWGFYLCLSCYCLVSDIVLYAQHVSLSVHYLVSDVVSVISGFVFCY 179
FNSG+ +FP LLR+WW + +SCYCLV D +++ +H S + YLVSD+VSV + F CY
Sbjct: 120 FNSGETKFPFLLRVWWALFFSISCYCLVVDFLVFHKHGSFEIQYLVSDLVSVFTAFFLCY 179
Query: 180 VGFLKRDKGEDTLLLQETLLDGDSSIGNGEVSSIKSRGTDNVTPYSNASLFSVLTFSWMG 239
VGFL R++ +DTLL ++ LL+GDSS NG SS KSRG D++TPY+NA LFS+LTFSWMG
Sbjct: 180 VGFL-RNECQDTLL-EQPLLNGDSSSINGLESS-KSRGGDSLTPYANAGLFSILTFSWMG 236
Query: 240 SLISLGNKKTLDLEDVPQLDSGDSVVGCFPIFRNKLEANRVEGNKVTAFKLTKALFFSAW 299
SLI+ GNKKTLDLEDVPQL S DSVVG F +F+NKLE++ ++VTAFKL KAL SAW
Sbjct: 237 SLIAFGNKKTLDLEDVPQLHSVDSVVGAFSVFKNKLESDSGAASRVTAFKLLKALLLSAW 296
Query: 300 KEIVFTAILALLYTLANYVGPYLIDTFVQYLNGEREFKNEGYVLVSTFFVAKIVECLAQR 359
KEI+ TA+LA++YT A+YVGPYLID+FVQ L+G E+KN+GY+L STFFVAK+VECL+QR
Sbjct: 297 KEILLTALLAIIYTSASYVGPYLIDSFVQCLDGRGEYKNQGYILASTFFVAKVVECLSQR 356
Query: 360 HWMFRLQVAGIKMRSVLVSMVYNKGLTLSCQAKQSYTSGEIINFMTVDAERIGDFGWYMH 419
HW FRLQ GI++R+V +M+YNK LTLS Q+KQ TSGEIIN MTVDAERI DF WYMH
Sbjct: 357 HWFFRLQQIGIRLRAVATTMIYNKALTLSSQSKQGQTSGEIINIMTVDAERISDFSWYMH 416
Query: 420 DPWLVILQVSLALLILYKNLGLASIAALFATVLIMLTNFPLGRLQENFQDKLMGSKDKRM 479
DPWLVILQV LALLILYKNLGLA+++ AT+++ML N+PLGRLQE+FQDKLM SKDKRM
Sbjct: 417 DPWLVILQVGLALLILYKNLGLATVSTFVATIVVMLLNYPLGRLQEHFQDKLMESKDKRM 476
Query: 480 KVTSEILRNMRILKLQGWEMKFLSKIIELRKIEAGWLKKFLYTGAMTSFVFWGAPTFVSV 539
K T+EILRNMRILKLQGWEMKFLSKI++LR++E GWLKK++Y AM SFVFWGAP+ V+V
Sbjct: 477 KATTEILRNMRILKLQGWEMKFLSKILDLRQVETGWLKKYVYNSAMISFVFWGAPSLVAV 536
Query: 540 ATFGACMLLGIPLESGKILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIASFLCLDD 599
ATFG CML+G PLESGKILSALATFRILQEPIYNLPDT+SMI+QTKVSLDRIASF+ LDD
Sbjct: 537 ATFGTCMLIGTPLESGKILSALATFRILQEPIYNLPDTVSMIVQTKVSLDRIASFISLDD 596
Query: 600 LQSDVVEKHPRGSSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKS 659
L++DV+EK P GSS+TA+EIVDGNF+WD+SS + TL++I+ +VFHGMRVAVCGTVGSGKS
Sbjct: 597 LKNDVLEKLPIGSSDTAVEIVDGNFSWDVSSPSATLKNIDFQVFHGMRVAVCGTVGSGKS 656
Query: 660 SLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACS 719
SLLSCILGEVP+ISGTLK+CGTKAYVAQSPWIQSG IE+NILFGK MDRE+Y+RVLEACS
Sbjct: 657 SLLSCILGEVPQISGTLKICGTKAYVAQSPWIQSGKIEENILFGKDMDRERYERVLEACS 716
Query: 720 LKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSH 779
LKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSH
Sbjct: 717 LKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSH 776
Query: 780 LFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSGTDFMVLVG 839
LFKE LLGLL SKTVIYVTHQVEFLPAADLILVMKDG+ITQAGKY+DILNSG+DFM LVG
Sbjct: 777 LFKEALLGLLNSKTVIYVTHQVEFLPAADLILVMKDGRITQAGKYDDILNSGSDFMELVG 836
Query: 840 AHQQALSALDSIEGGPVSERISMNKENGGMDTTNGVTMKEGNEDIQTDKVD 890
AH+ ALSA DS + SE S KEN D + KEGN+D Q K D
Sbjct: 837 AHKAALSAFDSKQAESASENESAGKENSSGDR---ILQKEGNKDSQNGKED 884
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359494293|ref|XP_003634755.1| PREDICTED: ABC transporter C family member 3-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1259 bits (3258), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 630/890 (70%), Positives = 738/890 (82%), Gaps = 11/890 (1%)
Query: 2 YPGTEFLLKPAFLRGISGSLHLVLLLGLFVSWVWKKLRVGVSDSEGYKERFKKKSVLRHK 61
YPGT FLL P FLR S SLHLVLLL LFVSWV K+++ G E K+ L +K
Sbjct: 4 YPGTGFLLNPVFLRVFSASLHLVLLLLLFVSWVCKRIKGGAP------ENCKRTRFLYYK 57
Query: 62 LILFCCFAVSVFNLVLCLLDYFSWFGNDWSGDKLVTLADLVLRTLGWGAICVYLHSQFFN 121
CC +S+ NL+LC L+YF W+ N WS ++LVTL DLVLRTL WGA+CVYLH+QF
Sbjct: 58 QTFACCQGLSLLNLLLCFLNYFYWYRNGWSDERLVTLLDLVLRTLAWGAVCVYLHTQFIG 117
Query: 122 SGQQRFPLLLRLWWGFYLCLSCYCLVSDIVLYAQHVSLSVHYLVSDVVSVISGFVFCYVG 181
S + +FP LLR+WWGFY +SCY LV DIV +H SL + YLV D+V VI+G CY G
Sbjct: 118 SVEPKFPFLLRVWWGFYFSISCYFLVLDIV--KKHQSLRIQYLVPDIVYVITGLFLCYSG 175
Query: 182 FLKRDKGEDTLLLQETLLDGDSSIGNGEVSSIKSRGTDNVTPYSNASLFSVLTFSWMGSL 241
FL +++GE+++L +E LL+G +SI V S KS+G VTP+S A FS+LTFSW+G L
Sbjct: 176 FLGKNQGEESIL-REPLLNGSTSIS--RVESNKSKGEATVTPFSKAGFFSLLTFSWIGPL 232
Query: 242 ISLGNKKTLDLEDVPQLDSGDSVVGCFPIFRNKLEANRVEGNKVTAFKLTKALFFSAWKE 301
I+ GNKKTLDLEDVPQLD+ +SV G FP F NKL+ + + VT KL KAL F+ W E
Sbjct: 233 IAEGNKKTLDLEDVPQLDTSNSVAGVFPAFSNKLQCDSGGSSGVTTLKLVKALIFACWAE 292
Query: 302 IVFTAILALLYTLANYVGPYLIDTFVQYLNGEREFKNEGYVLVSTFFVAKIVECLAQRHW 361
I+ TA L L+ TLA+YVGPYLIDTFVQYLNG REFKNEGY+L FFVAK+VE L+ RHW
Sbjct: 293 ILLTAFLVLVKTLASYVGPYLIDTFVQYLNGRREFKNEGYLLAMAFFVAKLVERLSVRHW 352
Query: 362 MFRLQVAGIKMRSVLVSMVYNKGLTLSCQAKQSYTSGEIINFMTVDAERIGDFGWYMHDP 421
FRLQ GI++R+VL++M+YNKGLTLSCQ+KQ +++GEIINFM+VDAERIGDF WYMHDP
Sbjct: 353 FFRLQQVGIRIRAVLITMIYNKGLTLSCQSKQGHSTGEIINFMSVDAERIGDFSWYMHDP 412
Query: 422 WLVILQVSLALLILYKNLGLASIAALFATVLIMLTNFPLGRLQENFQDKLMGSKDKRMKV 481
W+VI+QV+LALLILYKNLGLAS+AA FATV++MLTN PLG+ QE FQDKLM SKDKRMK
Sbjct: 413 WMVIVQVTLALLILYKNLGLASVAAFFATVIVMLTNVPLGKWQEKFQDKLMESKDKRMKA 472
Query: 482 TSEILRNMRILKLQGWEMKFLSKIIELRKIEAGWLKKFLYTGAMTSFVFWGAPTFVSVAT 541
TSEILRNMRILKLQGWEMKFLSKI++LRK E GWLKK+LYT A+T+FVFWGAPTFVSVAT
Sbjct: 473 TSEILRNMRILKLQGWEMKFLSKIVDLRKNETGWLKKYLYTSAVTTFVFWGAPTFVSVAT 532
Query: 542 FGACMLLGIPLESGKILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIASFLCLDDLQ 601
FG CMLLGIPLESGKILS+LATFRILQEPIY+LPD ISMI QTKVSLDRIASFL LDDL
Sbjct: 533 FGTCMLLGIPLESGKILSSLATFRILQEPIYSLPDLISMIAQTKVSLDRIASFLRLDDLP 592
Query: 602 SDVVEKHPRGSSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSL 661
SDV+E+ P+GSS+TAIEIVDGNF+WD+SS NPTL+DINL+V GMRVAVCGTVGSGKSSL
Sbjct: 593 SDVIERLPKGSSDTAIEIVDGNFSWDLSSPNPTLKDINLRVCRGMRVAVCGTVGSGKSSL 652
Query: 662 LSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLK 721
LSC+LGEVPKISG LKLCGTKAYVAQSPWIQSG IE+NILFGK M+RE+Y+RVL+ACSLK
Sbjct: 653 LSCMLGEVPKISGILKLCGTKAYVAQSPWIQSGKIEENILFGKEMERERYERVLDACSLK 712
Query: 722 KDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLF 781
KDLE+LSFGDQTVIGE GIN+SGGQKQRIQIARALYQ+ADIYLFDDPFSAVDAHTG+HLF
Sbjct: 713 KDLEVLSFGDQTVIGEWGINMSGGQKQRIQIARALYQNADIYLFDDPFSAVDAHTGTHLF 772
Query: 782 KEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSGTDFMVLVGAH 841
KE LLGL SKTVIYVTHQVEFLPAADLILVMKDG++TQAGKYN+ILNSGTDFM LVGAH
Sbjct: 773 KECLLGLSGSKTVIYVTHQVEFLPAADLILVMKDGRVTQAGKYNEILNSGTDFMELVGAH 832
Query: 842 QQALSALDSIEGGPVSERISMNKENGGMDTTNGVTMKEGNEDIQTDKVDE 891
++AL AL+S+E G +SE++S+ +++ + T+ V KE N Q K +E
Sbjct: 833 KKALLALNSVEAGSLSEKLSILEDSDNIGGTSEVVEKEENRGGQNGKAEE 882
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359494168|ref|XP_002265605.2| PREDICTED: ABC transporter C family member 3-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1248 bits (3230), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 624/891 (70%), Positives = 727/891 (81%), Gaps = 17/891 (1%)
Query: 2 YPGTEFLLKPAFLRGISGSLHLVLLLGLFVSWVWKKLRVGVSDSEGYKERFKKKSVLRHK 61
Y G FLL P LR S S HLVLLL LFVSW KK+++G E K+ +K
Sbjct: 10 YSGIGFLLNPTSLRAFSASFHLVLLLFLFVSWACKKIKMGA------LENCKRTGFSYYK 63
Query: 62 LILFCCFAVSVFNLVLCLLDYFSWFGNDWSGDKLVTLADLVLRTLGWGAICVYLHSQFFN 121
I CC +SVFNL L L+YF W+ N WS ++LVTL+DL LRT W +CVYLH+QF
Sbjct: 64 QIFVCCLGLSVFNLALFFLNYFYWYKNGWSDEQLVTLSDLALRTFAWATVCVYLHTQFLG 123
Query: 122 SGQQRFPLLLRLWWGFYLCLSCYCLVSDIVLYAQHVSLSVHYLVSDVVSVISGFVFCYVG 181
S + +FP LR+WWGFY +SCYCLV DIV QH S + +LV D V VI+G CY+G
Sbjct: 124 SVEPKFPFSLRVWWGFYFSISCYCLVIDIV--KQHQSQPIQFLVPDAVYVITGLFLCYLG 181
Query: 182 FLKRDKGEDTLLLQETLLDGDSSIGNGEVSSIKSRGTDNVTPYSNASLFSVLTFSWMGSL 241
+++GE+++L +E+LL G +SI V+S KS+G + VTP+SNA +FS+LTFSWMG L
Sbjct: 182 LWGKNQGEESIL-RESLLHGSASIST-RVASNKSKGEETVTPFSNAGVFSLLTFSWMGPL 239
Query: 242 ISLGNKKTLDLEDVPQLDSGDSVVGCFPIFRNKLEANRVEGNKVTAFKLTKALFFSAWKE 301
I+LGNKKTLDLEDVPQLD+ +SVVG FPIFR+KLE + G+ VT KL KA+ SAW E
Sbjct: 240 IALGNKKTLDLEDVPQLDAVNSVVGGFPIFRSKLEGDGGGGSGVTTLKLVKAMILSAWAE 299
Query: 302 IVFTAILALLYTLANYVGPYLIDTFVQYLNGEREFKNEGYVLVSTFFVAKIVECLAQRHW 361
I+ +A+ ALLYTLA+YVGPYLIDTFVQYLNG+R+FKNEGY LVS F VAK+VECL+ RHW
Sbjct: 300 ILLSALFALLYTLASYVGPYLIDTFVQYLNGQRQFKNEGYFLVSAFLVAKLVECLSMRHW 359
Query: 362 MFRLQVAGIKMRSVLVSMVYNKGLTLSCQAKQSYTSGEIINFMTVDAERIGDFGWYMHDP 421
FRLQ GI+MR+VLV+ +YNK L +S +KQ +TSGEIINF++VDAERIGDFGWYMHDP
Sbjct: 360 FFRLQQVGIRMRAVLVTKIYNKVLAVSYHSKQCHTSGEIINFISVDAERIGDFGWYMHDP 419
Query: 422 WLVILQVSLALLILYKNLGLASIAALFATVLIMLTNFPLGRLQENFQDKLMGSKDKRMKV 481
W+V LQV+LALLILYKNLGLASIAA FATV+IML N PL + QE FQDKLM SKDKRMK
Sbjct: 420 WMVTLQVALALLILYKNLGLASIAAFFATVIIMLANVPLAKFQEKFQDKLMESKDKRMKS 479
Query: 482 TSEILRNMRILKLQGWEMKFLSKIIELRKIEAGWLKKFLYTGAMTSFVFWGAPTFVSVAT 541
TSEILRNMRILKLQGWEMKFLSKI++LRK E GWLKK++YT A+T+FVFW P FVSV +
Sbjct: 480 TSEILRNMRILKLQGWEMKFLSKIVDLRKNETGWLKKYVYTLAITTFVFWVGPIFVSVVS 539
Query: 542 FGACMLLGIPLESGKILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIASFLCLDDLQ 601
FG ML+GIPLESGKILS+LATFRILQEPIYNLPDTISMI QTKVSLDRIASFL LDDLQ
Sbjct: 540 FGTAMLMGIPLESGKILSSLATFRILQEPIYNLPDTISMIAQTKVSLDRIASFLRLDDLQ 599
Query: 602 SDVVEKHPRGSSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSL 661
DVVEK P+G+S TAIEIV+GNF+WD+SS +PTL+DINL+V HGMRVAVCG VGSGKSSL
Sbjct: 600 PDVVEKLPKGTSSTAIEIVNGNFSWDLSSPHPTLKDINLQVHHGMRVAVCGAVGSGKSSL 659
Query: 662 LSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLK 721
LSCILGEVPKISGTLKL GTKAYVAQSPWIQ G IE+NILFGK MDRE+Y+RVL+AC+LK
Sbjct: 660 LSCILGEVPKISGTLKLSGTKAYVAQSPWIQGGKIEENILFGKEMDRERYERVLDACTLK 719
Query: 722 KDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLF 781
KDLEIL FGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTG+HLF
Sbjct: 720 KDLEILPFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGTHLF 779
Query: 782 KEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSGTDFMVLVGAH 841
KE LLGLL SKTV+YVTHQVEFLPAADLILVMK+G+ITQAGKYNDILN G+DF+ LVGAH
Sbjct: 780 KECLLGLLDSKTVVYVTHQVEFLPAADLILVMKEGRITQAGKYNDILNYGSDFVELVGAH 839
Query: 842 QQALSALDSIEGGPVSERISMNKENGGMDT--TNGVTMKEGNEDIQTDKVD 890
++ALSAL+SIE +E+ S+ EN +DT T+ V KE N + QT ++
Sbjct: 840 KKALSALESIE----AEKSSIMSEN-SVDTGSTSEVVPKEENRNGQTGNIE 885
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359494289|ref|XP_003634753.1| PREDICTED: ABC transporter C family member 3-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1243 bits (3217), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 623/890 (70%), Positives = 731/890 (82%), Gaps = 11/890 (1%)
Query: 2 YPGTEFLLKPAFLRGISGSLHLVLLLGLFVSWVWKKLRVGVSDSEGYKERFKKKSVLRHK 61
YPG FLL P FLR S SLHLVLLL LFVSWV K++ + G E +K+ L +K
Sbjct: 4 YPGIGFLLNPVFLRAFSASLHLVLLLLLFVSWVCKRI------NGGALENYKRTRFLYYK 57
Query: 62 LILFCCFAVSVFNLVLCLLDYFSWFGNDWSGDKLVTLADLVLRTLGWGAICVYLHSQFFN 121
CC +S+ N LC L+YF W+ N WSG+KLVTL DLVLRTL WGA+ VYLH+QF
Sbjct: 58 QTFACCQGLSLLNFFLCFLNYFYWYRNGWSGEKLVTLLDLVLRTLSWGAVSVYLHTQFHG 117
Query: 122 SGQQRFPLLLRLWWGFYLCLSCYCLVSDIVLYAQHVSLSVHYLVSDVVSVISGFVFCYVG 181
S + +FP LLR+WWGFY +SCYCLV DIV Q SL V +LV D+V VI+G CY G
Sbjct: 118 SVEPKFPFLLRVWWGFYFSISCYCLVIDIVKKDQ--SLQVQFLVPDIVYVITGLFLCYSG 175
Query: 182 FLKRDKGEDTLLLQETLLDGDSSIGNGEVSSIKSRGTDNVTPYSNASLFSVLTFSWMGSL 241
FL ++GE+++L +E LL+G +SI V S +S+G + VTP+S A FS+LTFSW+G L
Sbjct: 176 FLGNNQGEESIL-REPLLNGGTSISI--VESDESKGEETVTPFSKAGFFSLLTFSWIGPL 232
Query: 242 ISLGNKKTLDLEDVPQLDSGDSVVGCFPIFRNKLEANRVEGNKVTAFKLTKALFFSAWKE 301
I+ GNKKTLDL DVPQLD+ +SVV FP FRNKL+ + N VT KL KAL F+ W E
Sbjct: 233 IAEGNKKTLDLGDVPQLDTSNSVVAVFPAFRNKLQCDCGGSNGVTTLKLVKALIFAFWAE 292
Query: 302 IVFTAILALLYTLANYVGPYLIDTFVQYLNGEREFKNEGYVLVSTFFVAKIVECLAQRHW 361
I+ TA+ LL LA+YVGPYLIDTFVQYLNG REFKNEGYVLV FF+AK+VECL+ R
Sbjct: 293 ILLTALFLLLDILASYVGPYLIDTFVQYLNGRREFKNEGYVLVMVFFLAKLVECLSLRQC 352
Query: 362 MFRLQVAGIKMRSVLVSMVYNKGLTLSCQAKQSYTSGEIINFMTVDAERIGDFGWYMHDP 421
FRLQ G ++R+V+++M+YNKGLTLSCQ+KQ +T+GEIINFM+VDAERIGDF WYMH P
Sbjct: 353 SFRLQQVGFRIRAVMITMIYNKGLTLSCQSKQGHTTGEIINFMSVDAERIGDFIWYMHGP 412
Query: 422 WLVILQVSLALLILYKNLGLASIAALFATVLIMLTNFPLGRLQENFQDKLMGSKDKRMKV 481
W+VI+QV+LALLILYKN+GLAS+AA FAT+++ML N PLG+ +E FQ KLM SKDKRMK
Sbjct: 413 WMVIVQVTLALLILYKNVGLASVAAFFATIIVMLANVPLGKWEEKFQGKLMESKDKRMKA 472
Query: 482 TSEILRNMRILKLQGWEMKFLSKIIELRKIEAGWLKKFLYTGAMTSFVFWGAPTFVSVAT 541
TSEILRNMRILKLQGWEMKFLSKI++LRK E GWLKK+LYT AMT+F FW APTFVSV T
Sbjct: 473 TSEILRNMRILKLQGWEMKFLSKIVDLRKNETGWLKKYLYTSAMTTFFFWVAPTFVSVVT 532
Query: 542 FGACMLLGIPLESGKILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIASFLCLDDLQ 601
FG CML+GIPLESGKILS+LATFRILQ+PIY LPD ISMI+QTKVSLDRI SFL L DLQ
Sbjct: 533 FGTCMLIGIPLESGKILSSLATFRILQQPIYLLPDLISMIVQTKVSLDRITSFLRLVDLQ 592
Query: 602 SDVVEKHPRGSSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSL 661
SDV+E+ P+GSS+TAIEIVDGNF+WD+SS NPTL+DINL+V GMRVAVCGTVGSGKSSL
Sbjct: 593 SDVIERLPKGSSDTAIEIVDGNFSWDLSSPNPTLKDINLRVCRGMRVAVCGTVGSGKSSL 652
Query: 662 LSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLK 721
LSC+LGEVPKISG LKLCGTKAYVAQSPWIQSG IE+NILFGK MDRE+Y+RVL+ACSLK
Sbjct: 653 LSCMLGEVPKISGILKLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLDACSLK 712
Query: 722 KDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLF 781
KDLE+LSFGDQTVIGERGINLSGGQKQRIQIARALYQ+ADIYLFDDPFSAVDAHTG+HLF
Sbjct: 713 KDLEVLSFGDQTVIGERGINLSGGQKQRIQIARALYQNADIYLFDDPFSAVDAHTGTHLF 772
Query: 782 KEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSGTDFMVLVGAH 841
KE LLGLL SKTVIYVTHQVEFLPAADLILVMKDG+ITQAGKYN+ILNSGTDFM LVGAH
Sbjct: 773 KECLLGLLGSKTVIYVTHQVEFLPAADLILVMKDGRITQAGKYNEILNSGTDFMELVGAH 832
Query: 842 QQALSALDSIEGGPVSERISMNKENGGMDTTNGVTMKEGNEDIQTDKVDE 891
++ALSAL+S+E G +SE++S+++++ + T+ V KE N Q K +E
Sbjct: 833 KKALSALNSVETGSLSEKLSIHEDSDNIGGTSEVVEKEENSGGQNGKAEE 882
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356553519|ref|XP_003545103.1| PREDICTED: ABC transporter C family member 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1237 bits (3201), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 613/889 (68%), Positives = 713/889 (80%), Gaps = 12/889 (1%)
Query: 5 TEFLLKPAFLRGISGSLHLVLLLGLFVSWVWKKLRVGVSDSEGYKERFKKKSVLRHKLIL 64
T LLKP FL G S +HL+LLL + +SWVW K+ G D E +K S K +
Sbjct: 12 TAVLLKPIFLHGFSAFIHLLLLLAVSLSWVWNKITAGARD-----ESKEKPSHTLFKTTV 66
Query: 65 FCCFAVSVFNLVLCLLDYFSWFGNDWSGDKLVTLADLVLRTLGWGAICVYLHSQFFNSGQ 124
F VS FN +LCL YF W+ + WS +KLVTL DL L+TL WG +CV L + FF+SG+
Sbjct: 67 FSSLGVSAFNFLLCLFTYFYWYTSGWSEEKLVTLLDLALKTLAWGVVCVCLQNGFFSSGE 126
Query: 125 QRFPLLLRLWWGFYLCLSCYCLVSDIVLYAQH-VSLSVHYLVSDVVSVISGFVFCYVGFL 183
+RF R W FYL +SCYC V DIV+ ++ V+L YLVSDVVS G FCYVG+
Sbjct: 127 RRFSFFFRAWCTFYLVVSCYCFVVDIVVVSERRVALPTRYLVSDVVSTCVGLFFCYVGYF 186
Query: 184 KRDKGEDTLLLQETLLDGDSSIGNGEVSSIKSRGTDNVTPYSNASLFSVLTFSWMGSLIS 243
+++ +QE LL+ D+ + S +S+G D VTP+S A S+LTFSW+G LI+
Sbjct: 187 VKNEVHVDNGIQEPLLNSDA------LESKESKGGDTVTPFSYAGFLSILTFSWVGPLIA 240
Query: 244 LGNKKTLDLEDVPQLDSGDSVVGCFPIFRNKLEANRVEGNKVTAFKLTKALFFSAWKEIV 303
+GNKKTLDLEDVPQLD DSV+G FP FR KLEA+ N+VT KL K+L SAWKEI+
Sbjct: 241 VGNKKTLDLEDVPQLDGRDSVIGAFPSFREKLEADCGGINRVTTLKLAKSLIMSAWKEIL 300
Query: 304 FTAILALLYTLANYVGPYLIDTFVQYLNGEREFKNEGYVLVSTFFVAKIVECLAQRHWMF 363
TA LALL TLA+YVGPYLID FVQYL+G+R ++N+GY LVS FF AK+VECL QRHW+F
Sbjct: 301 ITAFLALLNTLASYVGPYLIDGFVQYLDGQRLYENQGYFLVSAFFFAKLVECLTQRHWIF 360
Query: 364 RLQVAGIKMRSVLVSMVYNKGLTLSCQAKQSYTSGEIINFMTVDAERIGDFGWYMHDPWL 423
+LQ G+++R++LV+M+YNK LTLSCQ+KQ +TSGEIINFMTVDAER+G F WYMHD W+
Sbjct: 361 KLQQVGLRIRALLVTMIYNKALTLSCQSKQGHTSGEIINFMTVDAERVGVFSWYMHDLWM 420
Query: 424 VILQVSLALLILYKNLGLASIAALFATVLIMLTNFPLGRLQENFQDKLMGSKDKRMKVTS 483
V LQV+LALLILYKNLGLASIAAL ATV+IML N PLG LQE FQ KLM SKD RMK TS
Sbjct: 421 VALQVTLALLILYKNLGLASIAALVATVVIMLANVPLGSLQEKFQKKLMESKDTRMKATS 480
Query: 484 EILRNMRILKLQGWEMKFLSKIIELRKIEAGWLKKFLYTGAMTSFVFWGAPTFVSVATFG 543
EILRNMRILKLQGWE+KFLSKI ELRK E GWLKK++YT A+T+FVFWG+PTFVSV TFG
Sbjct: 481 EILRNMRILKLQGWEIKFLSKITELRKNEQGWLKKYVYTAAVTTFVFWGSPTFVSVVTFG 540
Query: 544 ACMLLGIPLESGKILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIASFLCLDDLQSD 603
CML+GIPLESGKILSALATFRILQEPIY LPDTISMI QTKVSLDRI SFL LDDL+SD
Sbjct: 541 TCMLIGIPLESGKILSALATFRILQEPIYRLPDTISMIAQTKVSLDRIVSFLRLDDLRSD 600
Query: 604 VVEKHPRGSSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLS 663
VVEK P GSS+TAIE+VDGNF+WD+SS NPTL++INLKVFHGMRVAVCGTVGSGKS+LLS
Sbjct: 601 VVEKLPWGSSDTAIEVVDGNFSWDLSSPNPTLQNINLKVFHGMRVAVCGTVGSGKSTLLS 660
Query: 664 CILGEVPKISGTLKLCGTKAYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKD 723
C+LGEVPKISG LK+CGTKAYVAQSPWIQSG IEDNILFG+ MDRE+Y++VLEACSLKKD
Sbjct: 661 CVLGEVPKISGILKVCGTKAYVAQSPWIQSGKIEDNILFGERMDRERYEKVLEACSLKKD 720
Query: 724 LEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKE 783
LEILSFGDQT+IGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKE
Sbjct: 721 LEILSFGDQTIIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKE 780
Query: 784 VLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSGTDFMVLVGAHQQ 843
LLGLL SKTV+YVTHQVEFLPAADLILVMKDGKITQ GKY D+LNSG DFM LVGAH++
Sbjct: 781 CLLGLLSSKTVVYVTHQVEFLPAADLILVMKDGKITQCGKYTDLLNSGADFMELVGAHKK 840
Query: 844 ALSALDSIEGGPVSERISMNKENGGMDTTNGVTMKEGNEDIQTDKVDEQ 892
ALS LDS++G VS I+ +++ + T G KE +D Q K D++
Sbjct: 841 ALSTLDSLDGATVSNEINALEQDVNVSGTYGFKEKEARKDEQNGKTDKK 889
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356499431|ref|XP_003518544.1| PREDICTED: ABC transporter C family member 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1233 bits (3190), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 612/889 (68%), Positives = 717/889 (80%), Gaps = 12/889 (1%)
Query: 5 TEFLLKPAFLRGISGSLHLVLLLGLFVSWVWKKLRVGVSDSEGYKERFKKKSVLRHKLIL 64
T LLKP FL G+SG LHL+LL+ + +SWVW+K G D E KK + K +
Sbjct: 572 TAVLLKPIFLHGLSGFLHLLLLVAVVLSWVWRKFTAGPGD-----ESKKKPNNSLFKTTV 626
Query: 65 FCCFAVSVFNLVLCLLDYFSWFGNDWSGDKLVTLADLVLRTLGWGAICVYLHSQFFNSGQ 124
F A+S FN +LC ++YF W+ + WS +KLVTL DL L+TL WG +CV L FF+SGQ
Sbjct: 627 FSSLALSAFNFLLCFINYFYWYTSGWSEEKLVTLLDLALKTLAWGVVCVCLQKGFFSSGQ 686
Query: 125 QRFPLLLRLWWGFYLCLSCYCLVSDIVLYA-QHVSLSVHYLVSDVVSVISGFVFCYVGFL 183
+RF R W+ FYL +SCYC+V DIV+ + + VSL YLVSDVVS G FCYVG+
Sbjct: 687 RRFSFFFRAWFTFYLFVSCYCIVVDIVVMSGRRVSLPTQYLVSDVVSTCVGLFFCYVGYF 746
Query: 184 KRDKGEDTLLLQETLLDGDSSIGNGEVSSIKSRGTDNVTPYSNASLFSVLTFSWMGSLIS 243
+++ + E LL+ DS + S +++G D+VTP+S A + S+LTFSW+G LI+
Sbjct: 747 VKNEVHVDNGIHEPLLNADS------LESKETKGGDSVTPFSYAGILSILTFSWVGPLIA 800
Query: 244 LGNKKTLDLEDVPQLDSGDSVVGCFPIFRNKLEANRVEGNKVTAFKLTKALFFSAWKEIV 303
+GNKKTLDLEDVPQLDS DSV+G FP FR K+EA+ N VT KL K+L SAWKEI+
Sbjct: 801 VGNKKTLDLEDVPQLDSRDSVIGAFPTFREKVEADCGGINSVTTLKLVKSLIISAWKEIL 860
Query: 304 FTAILALLYTLANYVGPYLIDTFVQYLNGEREFKNEGYVLVSTFFVAKIVECLAQRHWMF 363
TA L LL TLA+YVGPYLID FVQYL+G+R ++N+GY LVS FF AK+VECL QRHW F
Sbjct: 861 ITAFLVLLNTLASYVGPYLIDGFVQYLDGQRLYENQGYFLVSAFFFAKLVECLTQRHWFF 920
Query: 364 RLQVAGIKMRSVLVSMVYNKGLTLSCQAKQSYTSGEIINFMTVDAERIGDFGWYMHDPWL 423
RLQ G+++R++LV+M+YNK LTLSCQ+KQ +TSGEIINFMTVDAER+G F WYMHD W+
Sbjct: 921 RLQQVGLRIRALLVTMIYNKALTLSCQSKQGHTSGEIINFMTVDAERVGVFSWYMHDLWM 980
Query: 424 VILQVSLALLILYKNLGLASIAALFATVLIMLTNFPLGRLQENFQDKLMGSKDKRMKVTS 483
V LQV+LALLILYKNLGLASIAA ATV IML N PLG LQE FQ KLM SKD RMK TS
Sbjct: 981 VALQVTLALLILYKNLGLASIAAFVATVAIMLANVPLGSLQEKFQKKLMESKDTRMKATS 1040
Query: 484 EILRNMRILKLQGWEMKFLSKIIELRKIEAGWLKKFLYTGAMTSFVFWGAPTFVSVATFG 543
EILRNMRILKLQGWEMKFLSKI ELRK E GWLKK++YT A+T+FVFWG+PTFVSV TFG
Sbjct: 1041 EILRNMRILKLQGWEMKFLSKITELRKNEQGWLKKYVYTAAVTTFVFWGSPTFVSVVTFG 1100
Query: 544 ACMLLGIPLESGKILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIASFLCLDDLQSD 603
CML+GIPLESGKILSALATFRILQEPIY LPDTISMI QTKVSLDRI SFL LDDL+SD
Sbjct: 1101 TCMLMGIPLESGKILSALATFRILQEPIYGLPDTISMIAQTKVSLDRIVSFLRLDDLRSD 1160
Query: 604 VVEKHPRGSSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLS 663
VVEK P GSS+TAIE+VDGNF+WD+SS +PTL++INLKVFHGMRVAVCGTVGSGKS+LLS
Sbjct: 1161 VVEKLPWGSSDTAIEVVDGNFSWDLSSPSPTLQNINLKVFHGMRVAVCGTVGSGKSTLLS 1220
Query: 664 CILGEVPKISGTLKLCGTKAYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKD 723
C+LGEVPKISG LK+CGTKAYVAQSPWIQSG IEDNILFG+ MDR++Y++VLEACSLKKD
Sbjct: 1221 CVLGEVPKISGILKVCGTKAYVAQSPWIQSGKIEDNILFGERMDRDRYEKVLEACSLKKD 1280
Query: 724 LEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKE 783
LEILSFGDQT+IGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKE
Sbjct: 1281 LEILSFGDQTIIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKE 1340
Query: 784 VLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSGTDFMVLVGAHQQ 843
LLGLL SKTV+YVTHQVEFLPAADLILVMKDGKITQ GKY D+LNSG DFM LVGAH++
Sbjct: 1341 CLLGLLCSKTVVYVTHQVEFLPAADLILVMKDGKITQCGKYTDLLNSGADFMELVGAHKK 1400
Query: 844 ALSALDSIEGGPVSERISMNKENGGMDTTNGVTMKEGNEDIQTDKVDEQ 892
ALS LDS++G VS IS+ +++ + T+G KE ++D Q + D +
Sbjct: 1401 ALSTLDSLDGAAVSNEISVLEQDVNVSDTHGFKEKEASKDEQNGQTDNK 1449
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359494291|ref|XP_003634754.1| PREDICTED: ABC transporter C family member 3-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1232 bits (3187), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 615/865 (71%), Positives = 717/865 (82%), Gaps = 11/865 (1%)
Query: 2 YPGTEFLLKPAFLRGISGSLHLVLLLGLFVSWVWKKLRVGVSDSEGYKERFKKKSVLRHK 61
YPG FLL P FLR S SLHLVLLL LFVSWV K++ + G E K+ L +K
Sbjct: 4 YPGIGFLLNPVFLRAFSASLHLVLLLLLFVSWVCKRI------NGGALENCKRTRFLYYK 57
Query: 62 LILFCCFAVSVFNLVLCLLDYFSWFGNDWSGDKLVTLADLVLRTLGWGAICVYLHSQFFN 121
CC +S+ N LC L+YF W+ N WSG+KLVTL DLVLRTL WGA+CVYLH+QF
Sbjct: 58 QTFACCQGLSLLNFFLCFLNYFYWYRNGWSGEKLVTLLDLVLRTLSWGAVCVYLHTQFHG 117
Query: 122 SGQQRFPLLLRLWWGFYLCLSCYCLVSDIVLYAQHVSLSVHYLVSDVVSVISGFVFCYVG 181
S + +FP LLR+WWGFY +SCYCLV DIV Q SL V +LV D+V VI+G CY G
Sbjct: 118 SVEPKFPFLLRVWWGFYFSISCYCLVIDIVKKDQ--SLQVQFLVPDIVYVITGLFLCYSG 175
Query: 182 FLKRDKGEDTLLLQETLLDGDSSIGNGEVSSIKSRGTDNVTPYSNASLFSVLTFSWMGSL 241
FL +++G++++L +E LL+G +SI V S +S+G + VTP+S A FS+LTFSW+G L
Sbjct: 176 FLGKNQGKESIL-REPLLNGGTSISI--VESDESKGEETVTPFSKAGFFSLLTFSWIGPL 232
Query: 242 ISLGNKKTLDLEDVPQLDSGDSVVGCFPIFRNKLEANRVEGNKVTAFKLTKALFFSAWKE 301
I+ GNKKTLDL DVPQLD+ +SVV FP FRNKL+ + N VT KL KAL F+ W E
Sbjct: 233 IAEGNKKTLDLGDVPQLDTSNSVVAVFPAFRNKLQCDCGGSNGVTTLKLVKALIFAFWAE 292
Query: 302 IVFTAILALLYTLANYVGPYLIDTFVQYLNGEREFKNEGYVLVSTFFVAKIVECLAQRHW 361
I+ TA+ LL LA+YVGPYLIDTFVQYLNG REFKNEGYVLV FF+AK+VECL+ R
Sbjct: 293 ILLTALFLLLDILASYVGPYLIDTFVQYLNGRREFKNEGYVLVMVFFLAKLVECLSLRQC 352
Query: 362 MFRLQVAGIKMRSVLVSMVYNKGLTLSCQAKQSYTSGEIINFMTVDAERIGDFGWYMHDP 421
FRLQ G ++R+V+++M+YNKGLTLSCQ+KQ +T+GEIINFM+VDAERIGDF WYMH P
Sbjct: 353 SFRLQQVGFRIRAVMITMIYNKGLTLSCQSKQGHTTGEIINFMSVDAERIGDFIWYMHGP 412
Query: 422 WLVILQVSLALLILYKNLGLASIAALFATVLIMLTNFPLGRLQENFQDKLMGSKDKRMKV 481
W+VI+QV+LALLILYKN+GLAS+AA FAT+++ML N PLG+ +E FQ KLM SKDKRMK
Sbjct: 413 WMVIVQVTLALLILYKNVGLASVAAFFATIIVMLANVPLGKWEEKFQGKLMESKDKRMKA 472
Query: 482 TSEILRNMRILKLQGWEMKFLSKIIELRKIEAGWLKKFLYTGAMTSFVFWGAPTFVSVAT 541
TSEILRNMRILKLQGWEMKFLSKI++LRK E GWLKK+LYT AMT+F FW APTFVSV T
Sbjct: 473 TSEILRNMRILKLQGWEMKFLSKIVDLRKNETGWLKKYLYTSAMTTFFFWVAPTFVSVVT 532
Query: 542 FGACMLLGIPLESGKILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIASFLCLDDLQ 601
FG CML+GIPLESGKILS+LATFRILQ+PIY+LPD ISMI QTKVSLDRI SFL L DLQ
Sbjct: 533 FGTCMLIGIPLESGKILSSLATFRILQQPIYSLPDLISMIAQTKVSLDRITSFLRLVDLQ 592
Query: 602 SDVVEKHPRGSSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSL 661
SDV+E+ P+GSS+TAIEIVDGNF+WD+SS NPTL+DINL+V GMRVAVCGTVGSGKSSL
Sbjct: 593 SDVIERLPKGSSDTAIEIVDGNFSWDLSSPNPTLKDINLRVCRGMRVAVCGTVGSGKSSL 652
Query: 662 LSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLK 721
LSCILGEVPKISG LKLCGTKAYVAQSPWIQSG IE+NILFGK MDRE+Y+RVL+ACSLK
Sbjct: 653 LSCILGEVPKISGILKLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLDACSLK 712
Query: 722 KDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLF 781
KDLE+LSFGDQTVIG+RGINLSGGQKQRIQIARALYQ+ADIYLFDDPFSAVDAHTG+HLF
Sbjct: 713 KDLEVLSFGDQTVIGKRGINLSGGQKQRIQIARALYQNADIYLFDDPFSAVDAHTGTHLF 772
Query: 782 KEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSGTDFMVLVGAH 841
KE LLGLL SKTVIYVTHQVEFLPAADLILVMKDG+ITQAGKYN+ILNSGTDFM LVGAH
Sbjct: 773 KECLLGLLGSKTVIYVTHQVEFLPAADLILVMKDGRITQAGKYNEILNSGTDFMELVGAH 832
Query: 842 QQALSALDSIEGGPVSERISMNKEN 866
++ALSAL+S+E G +SE+ ++ E
Sbjct: 833 KKALSALNSVEAGSLSEKSTLIAEK 857
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1300 | ||||||
| TAIR|locus:2090029 | 1514 | ABCC3 "ATP-binding cassette C3 | 0.676 | 0.580 | 0.647 | 0.0 | |
| TAIR|locus:2090049 | 1493 | ABCC7 "ATP-binding cassette C7 | 0.636 | 0.554 | 0.633 | 0.0 | |
| TAIR|locus:2090039 | 1466 | ABCC6 "ATP-binding cassette C6 | 0.626 | 0.555 | 0.622 | 0.0 | |
| TAIR|locus:2020235 | 1514 | ABCC5 "ATP-binding cassette C5 | 0.591 | 0.507 | 0.491 | 0.0 | |
| TAIR|locus:2081755 | 1539 | ABCC14 "ATP-binding cassette C | 0.598 | 0.505 | 0.394 | 6.5e-265 | |
| TAIR|locus:2043268 | 1516 | ABCC4 "ATP-binding cassette C4 | 0.563 | 0.482 | 0.414 | 1.1e-264 | |
| TAIR|locus:2077750 | 1453 | ABCC10 "ATP-binding cassette C | 0.489 | 0.437 | 0.442 | 1.3e-257 | |
| DICTYBASE|DDB_G0284867 | 1593 | abcC8 "ABC transporter C famil | 0.506 | 0.413 | 0.368 | 1.6e-204 | |
| UNIPROTKB|F1PHV0 | 1544 | ABCC2 "Uncharacterized protein | 0.41 | 0.345 | 0.404 | 5.4e-201 | |
| UNIPROTKB|E1C6S5 | 1552 | ABCC2 "Uncharacterized protein | 0.463 | 0.388 | 0.365 | 8.4e-201 |
| TAIR|locus:2090029 ABCC3 "ATP-binding cassette C3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2907 (1028.4 bits), Expect = 0., Sum P(2) = 0.
Identities = 575/888 (64%), Positives = 687/888 (77%)
Query: 7 FLLKPAFLRXXXXXXXXXXXXXXXXXXXWKKLRVGVSDSEGYKERFKKKSVLRHKLILFC 66
FLLKP FLR KK+R DS G E K + K LFC
Sbjct: 31 FLLKPLFLRWLSGFLHSVLLLVLFFSWVRKKIR---GDS-GVTESLKDRRDFGFKSALFC 86
Query: 67 CFAVSVFNLVLCLLDYFSWFGNDW-SGDKLVTLADLVLRTLGWGAICVYLHSQFFNSGQQ 125
A+S+ NLVL L F W+ + W ++LV+ +L + WG + + LH + + +
Sbjct: 87 SLALSLLNLVLMSLSGFYWYESGWLDNEQLVSSLGFLLGMVSWGVLSICLH-RCRDCEHK 145
Query: 126 RFPLLLRLWWGFYLCLSCYCLVSDIVLYAQHVSLSVHYLVSDVVSVISGFVFCYVGFLKR 185
+ P LLRLW FYL +SCY LV D V+Y + ++ VH LV D+V+ I+ YV LK+
Sbjct: 146 KAPFLLRLWLVFYLVVSCYSLVVDFVMYERRETVPVHLLVFDIVAFIAAVFLGYVAVLKK 205
Query: 186 DKXXXXXXXXX-XXXXXDSSIGNGE-VSSIKSRGTDNVTPYSNASLFSVLTFSWMGSLIS 243
D+ DS +G + V K+ G+ TPYS A + S+LTFSWM LI
Sbjct: 206 DRSNSNGVLEEPLLNGGDSRVGGDDSVELNKTNGSGEATPYSRAGILSLLTFSWMSPLID 265
Query: 244 LGNKKTLDLEDVPQLDSGDSVVGCFPIFRNKLEA-NRVEGNKVTAFKLTKALFFSAWKEI 302
+GNKKTLDLEDVPQL DSVVG P FR+ LE+ + E + VT FKL KAL+F+A EI
Sbjct: 266 IGNKKTLDLEDVPQLHDTDSVVGLAPKFRSMLESPDGGERSGVTTFKLIKALYFTAQWEI 325
Query: 303 VFTAILALLYTLANYVGPYLIDTFVQYLNGEREFKNEGYVLVSTFFVAKIVECLAQRHWM 362
+ TA A +YT+A+YVGP LIDTFVQYLNG R++ +EGYVLV TFF AKIVECL+QRHW
Sbjct: 326 LVTAFFAFIYTVASYVGPALIDTFVQYLNGRRQYNHEGYVLVITFFAAKIVECLSQRHWF 385
Query: 363 FRLQVAGIKMRSVLVSMVYNKGLTLSCQAKQSYTSGEIINFMTVDAERIGDFGWYMHDPW 422
FRLQ GI+MRS LV+M+Y KGLTLSCQ+KQ TSGEIINFMTVDAERIG+F WYMHDPW
Sbjct: 386 FRLQKVGIRMRSALVAMIYEKGLTLSCQSKQGRTSGEIINFMTVDAERIGNFSWYMHDPW 445
Query: 423 LVILQVSLALLILYKNLGLASIAALFATVLIMLTNFPLGRLQENFQDKLMGSKDKRMKVT 482
+V+LQV LAL ILY+NLGLASIAAL AT+++ML NFP GR+QE FQ+KLM +KD RMK T
Sbjct: 446 MVLLQVGLALWILYRNLGLASIAALVATIIVMLINFPFGRMQERFQEKLMEAKDSRMKST 505
Query: 483 SEILRNMRILKLQGWEMKFLSKIIELRKIEAGWLKKFLYTGAMTSFVFWGAPTFVSVATF 542
SEILRNMRILKLQGWEMKFLSKI +LRK E GWLKK++Y A+ SFVFWGAPT VSV+TF
Sbjct: 506 SEILRNMRILKLQGWEMKFLSKIFDLRKSEEGWLKKYVYNSAVISFVFWGAPTLVSVSTF 565
Query: 543 GACMLLGIPLESGKILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIASFLCLDDLQS 602
GAC+LLGIPLESGKILSALATFRILQEPIYNLPDTISMI+QTKVSLDR+AS+LCLD+LQ
Sbjct: 566 GACILLGIPLESGKILSALATFRILQEPIYNLPDTISMIVQTKVSLDRLASYLCLDNLQP 625
Query: 603 DVVEKHPRGSSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLL 662
D+VE+ P+GSS+ A+E+++ +WD+SS+NPTL+DIN KVF GM+VAVCGTVGSGKSSLL
Sbjct: 626 DIVERLPKGSSDVAVEVINSTLSWDVSSSNPTLKDINFKVFPGMKVAVCGTVGSGKSSLL 685
Query: 663 SCILGEVPKISGTLKLCGTKAYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKK 722
S +LGEVPK+SG+LK+CGTKAYVAQSPWIQSG IEDNILFGKPM+RE+YD+VLEACSL K
Sbjct: 686 SSLLGEVPKVSGSLKVCGTKAYVAQSPWIQSGKIEDNILFGKPMERERYDKVLEACSLSK 745
Query: 723 DLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFK 782
DLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFK
Sbjct: 746 DLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFK 805
Query: 783 EVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSGTDFMVLVGAHQ 842
EVLLGLL SK+VIYVTHQVEFLPAADLILVMKDG+I+QAGKYNDILNSGTDFM L+GAHQ
Sbjct: 806 EVLLGLLCSKSVIYVTHQVEFLPAADLILVMKDGRISQAGKYNDILNSGTDFMELIGAHQ 865
Query: 843 QALSALDSIEGGPVSERISMNKENGGMDTTNGVTMKEGNEDIQTDKVD 890
+AL+ +DS++ VSE+ ++ +EN + V K ++D++ DK++
Sbjct: 866 EALAVVDSVDANSVSEKSALGQENVIVKDAIAVDEKLESQDLKNDKLE 913
|
|
| TAIR|locus:2090049 ABCC7 "ATP-binding cassette C7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2682 (949.2 bits), Expect = 0., Sum P(2) = 0.
Identities = 528/833 (63%), Positives = 631/833 (75%)
Query: 37 KLRVGVSDSEGY-KERFKKKSVLRHKLILFCCFAVSVFNLVLCLLDYFSWFGNDWSGDKL 95
K R+G +S+ + ERFK S+ +KL++ CC +S N VL LL F+ N W +L
Sbjct: 43 KKRLGWENSDAFTNERFKDMSLTYNKLVVICCETLSALNSVLLLLSCFNLHKNGWDRSEL 102
Query: 96 VTLADLVLRTLGWGAICVYLHSQFFNSGQQRFPLLLRLWWGFYLCLSCYCLVSDIVLYAQ 155
+ L DL+ L WGAI Y+ SQF S Q+FP+LLR+WW Y SCY L+ DI LY +
Sbjct: 103 MILLDLLFTALSWGAISFYIRSQFTYSHDQKFPILLRVWWVLYFMFSCYRLLVDIALYKK 162
Query: 156 HVSLSVHYLVSDVVSVISGFVFCYVGFLKRDKXXXXXXXXXX--XXXXDSSIGNGEVSSI 213
+SVH L+SDV++V G CY K+ + +SS V
Sbjct: 163 QELVSVHLLLSDVLAVSVGLFLCYSCLQKQGQGERINLLLEEPLLNGAESSAATS-VQLD 221
Query: 214 KSRGTDNVTPYSNASLFSVLTFSWMGSLISLGNKKTLDLEDVPQLDSGDSVVGCFPIFRN 273
K+ + VTP+SNA S ++FSWM LI LGN+K +D EDVPQ+D+ D F IFR+
Sbjct: 222 KAEDDEVVTPFSNAGFLSHVSFSWMSPLIVLGNEKIIDSEDVPQVDNSDRAEKLFWIFRS 281
Query: 274 KLEANRVEGNKVTAFKLTKALFFSAWKEIVFTAILALLYTLANYVGPYLIDTFVQYLNGE 333
KLE + E ++T +KL KALFFS W++I+ + + A +YT++ YV PYL+DTFVQYLNG+
Sbjct: 282 KLEWDDGE-RRITTYKLIKALFFSVWRDILLSTLFAFVYTVSCYVAPYLMDTFVQYLNGQ 340
Query: 334 REFKNEGYVLVSTFFVAKIVECLAQRHWMFRLQVAGIKMRSVLVSMVYNKGLTLSCQAKQ 393
R++ N+G VLV+TFFVAK+VEC A+R+W FRLQ AGI MRSVLVSM+Y KGLTL C +KQ
Sbjct: 341 RQYSNQGVVLVTTFFVAKLVECQARRNWYFRLQKAGIGMRSVLVSMIYEKGLTLPCYSKQ 400
Query: 394 SYTSGEIINFMTVDAERIGDFGWYMHDPWLVILQVSLALLILYKNLGLASIAALFATVLI 453
+TSGEIIN MTVDAERI F WYMHDPW+++LQ+SLALLILY++LGL SIAA AT L+
Sbjct: 401 GHTSGEIINLMTVDAERISAFSWYMHDPWILVLQISLALLILYRSLGLGSIAAFAATFLV 460
Query: 454 MLTNFPLGRLQENFQDKLMGSKDKRMKVTSEILRNMRILKLQGWEMKFLSKIIELRKIEA 513
ML N PL +L+E FQ LM SKD RMK TSE L NMRILKLQGWEMKFL KI++LR IEA
Sbjct: 461 MLGNIPLAKLEEKFQGNLMESKDNRMKKTSEALLNMRILKLQGWEMKFLHKILDLRGIEA 520
Query: 514 GWLKKFLYTGAMTSFVFWGAPTFVSVATFGACMLLGIPLESGKILSALATFRILQEPIYN 573
GWLKKF+Y A S V W AP+FVS FGACMLL IPLESGKI++ALATFRILQ PIY
Sbjct: 521 GWLKKFVYNSAAISSVLWAAPSFVSATAFGACMLLKIPLESGKIIAALATFRILQTPIYK 580
Query: 574 LPDTISMIIQTKVSLDRIASFLCLDDLQSDVVEKHPRGSSETAIEIVDGNFAWDISSNNP 633
LPDTISMI+QTKVSLDRIA+FLCLDDLQ D +E+ P GSS+ +E+ +G F+WD SS P
Sbjct: 581 LPDTISMIVQTKVSLDRIATFLCLDDLQQDGMERLPSGSSKMDVEVSNGAFSWDDSSPIP 640
Query: 634 TLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQS 693
TL+DI K+ HGM +A+CGTVGSGKSSLLS ILGEVPKISG LK+CG KAY+AQSPWIQS
Sbjct: 641 TLKDIRFKIPHGMNIAICGTVGSGKSSLLSSILGEVPKISGNLKVCGRKAYIAQSPWIQS 700
Query: 694 GNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIA 753
G +E+NILFGKPM RE Y RVLEACSL KDLE+ F DQTVIGERGINLSGGQKQRIQIA
Sbjct: 701 GKVEENILFGKPMQREWYQRVLEACSLNKDLEVFPFRDQTVIGERGINLSGGQKQRIQIA 760
Query: 754 RALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVM 813
RALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLR+KTVIYVTHQ+EFLP ADLILVM
Sbjct: 761 RALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRNKTVIYVTHQLEFLPEADLILVM 820
Query: 814 KDGKITQAGKYNDILNSGTDFMVLVGAHQQALSALDSIEGGPVSERISMNKEN 866
KDG+ITQAGKYN+IL SGTDFM LVGAH AL+A+DS E G S + + +KE+
Sbjct: 821 KDGRITQAGKYNEILESGTDFMELVGAHTDALAAVDSYEKGSASAQSTTSKES 873
|
|
| TAIR|locus:2090039 ABCC6 "ATP-binding cassette C6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2586 (915.4 bits), Expect = 0., Sum P(2) = 0.
Identities = 517/830 (62%), Positives = 622/830 (74%)
Query: 37 KLRVGVSDSEGYKERFKKKSVLRHKLILFCCFAVSVFNLVLCLLDYFSWFGNDWSGDKLV 96
K RV D++ K + ++ C VS+ ++ +L S W +
Sbjct: 37 KKRVACEDTDAIMNEEFKHISFSYNKLVLIC-CVSL-SVFYSVLSLLSCL--HWHTNGWP 92
Query: 97 TLADLVLRTLGWGAICVYLHSQFFNSGQQRFPLLLRLWWGFYLCLSCYCLVSDIVLYAQH 156
L DL+L L WG+I VYL ++ NS +Q+ LLR+WW F+ +SCY LV D VLY +
Sbjct: 93 FL-DLLLAALTWGSISVYLFGRYTNSCEQKVLFLLRVWWVFFFVVSCYHLVVDFVLYKKQ 151
Query: 157 VSLSVHYLVSDVVSVISGFVFCYVGFLKRDKXXXXXXXXXXXXXXDSSIGNGEVSSIKSR 216
+SVH+++SD+V V +G C K+ + S N EV++
Sbjct: 152 EMVSVHFVISDLVGVCAGLFLCCSCLWKKGEGERIDLLKEPLLSSAESSDNEEVTA---- 207
Query: 217 GTDNVTPYSNASLFSVLTFSWMGSLISLGNKKTLDLEDVPQLDSGDSVVGCFPIFRNKLE 276
P+S A + S ++FSWM LI+LGN+K +D++DVPQLD D+ F IFR+KLE
Sbjct: 208 ------PFSKAGILSRMSFSWMSPLITLGNEKIIDIKDVPQLDRSDTTESLFWIFRSKLE 261
Query: 277 ANRVEGNKVTAFKLTKALFFSAWKEIVFTAILALLYTLANYVGPYLIDTFVQYLNGEREF 336
+ E ++T FKL KALF S W++IV +A+LA +YT++ YV PYL+D FVQYLNG R++
Sbjct: 262 WDDGE-RRITTFKLIKALFLSVWRDIVLSALLAFVYTVSCYVAPYLMDNFVQYLNGNRQY 320
Query: 337 KNEGYVLVSTFFVAKIVECLAQRHWMFRLQVAGIKMRSVLVSMVYNKGLTLSCQAKQSYT 396
KN+GYVLV+TFFVAK+VEC QR W FR Q AG+ MRSVLVSM+Y KGLTL C +KQ +T
Sbjct: 321 KNQGYVLVTTFFVAKLVECQTQRQWFFRGQKAGLGMRSVLVSMIYEKGLTLPCHSKQGHT 380
Query: 397 SGEIINFMTVDAERIGDFGWYMHDPWLVILQVSLALLILYKNLGLASIAALFATVLIMLT 456
SGEIIN M VDA+RI F W+MHDPW+++LQVSLAL ILYK+LGL SIAA AT+L+ML
Sbjct: 381 SGEIINLMAVDADRISAFSWFMHDPWILVLQVSLALWILYKSLGLGSIAAFPATILVMLA 440
Query: 457 NFPLGRLQENFQDKLMGSKDKRMKVTSEILRNMRILKLQGWEMKFLSKIIELRKIEAGWL 516
N+P +L+E FQ LM SKD RMK TSE+L NM+ILKLQGWEMKFLSKI+ELR IEAGWL
Sbjct: 441 NYPFAKLEEKFQSSLMKSKDNRMKKTSEVLLNMKILKLQGWEMKFLSKILELRHIEAGWL 500
Query: 517 KKFLYTGAMTSFVFWGAPTFVSVATFGACMLLGIPLESGKILSALATFRILQEPIYNLPD 576
KKF+Y + + V W AP+F+S FGAC+LL IPLESGKIL+ALATFRILQ PIY LP+
Sbjct: 501 KKFVYNSSAINSVLWAAPSFISATAFGACLLLKIPLESGKILAALATFRILQGPIYKLPE 560
Query: 577 TISMIIQTKVSLDRIASFLCLDDLQSDVVEKHPRGSSETAIEIVDGNFAWDISSNNPTLR 636
TISMI+QTKVSL+RIASFLCLDDLQ DVV + P GSSE A+EI +G F+WD SS PTLR
Sbjct: 561 TISMIVQTKVSLNRIASFLCLDDLQQDVVGRLPSGSSEMAVEISNGTFSWDDSSPIPTLR 620
Query: 637 DINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGNI 696
D+N KV GM VA+CGTVGSGKSSLLS ILGEVPKISG LK+CG KAY+AQSPWIQSG +
Sbjct: 621 DMNFKVSQGMNVAICGTVGSGKSSLLSSILGEVPKISGNLKVCGRKAYIAQSPWIQSGKV 680
Query: 697 EDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARAL 756
E+NILFGKPM+RE YDRVLEACSL KDLEIL F DQTVIGERGINLSGGQKQRIQIARAL
Sbjct: 681 EENILFGKPMEREWYDRVLEACSLNKDLEILPFHDQTVIGERGINLSGGQKQRIQIARAL 740
Query: 757 YQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDG 816
YQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLR KTVIYVTHQVEFLP ADLILVMKDG
Sbjct: 741 YQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRHKTVIYVTHQVEFLPEADLILVMKDG 800
Query: 817 KITQAGKYNDILNSGTDFMVLVGAHQQALSALDSIEGGPVSERISMNKEN 866
KITQAGKY++IL+SGTDFM LVGAH +AL+ +DS E G SE+ + +KEN
Sbjct: 801 KITQAGKYHEILDSGTDFMELVGAHTEALATIDSCETGYASEKSTTDKEN 850
|
|
| TAIR|locus:2020235 ABCC5 "ATP-binding cassette C5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1936 (686.6 bits), Expect = 0., Sum P(2) = 0.
Identities = 390/794 (49%), Positives = 531/794 (66%)
Query: 62 LILFCCFAVSVFNLVLCLLDYFSWFG--NDWSGDKLVTLADLVLRTLGWGAIC-VYLHSQ 118
L L CC V +++ + D +DW L ++L W + + LH +
Sbjct: 80 LSLLCCLYVLGVQVLVLVYDGVKVRREVSDW-----FVLCFPASQSLAWFVLSFLVLHLK 134
Query: 119 FFNSGQQRFPLLLRLWW--GFYLCLSCYCLVSDIVLYAQHVS-LSVHYLVSDVVSVISGF 175
+ +S ++ P L+R+WW F +CL C V L + S S H + + V+ GF
Sbjct: 135 YKSS--EKLPFLVRIWWFLAFSICL-CTMYVDGRRLAIEGWSRCSSHVVANLAVTPALGF 191
Query: 176 VFCYVGFLKRDKXXXXXXXXXXXXXXDSSIGNGEVSSIKSRGTDNVTPYSNASLFSVLTF 235
+ C++ + R + + E + +K VTPYS A L S++T
Sbjct: 192 L-CFLAW--RG-VSGIQVTRSSSDLQEPLLVEEEAACLK------VTPYSTAGLVSLITL 241
Query: 236 SWMGSLISLGNKKTLDLEDVPQLDSGDSVVGCFPIFRNKLEANRVEGNKVTAFKLTKALF 295
SW+ L+S G+K+ L+L+D+P L D + + ++ + + E N L +A+
Sbjct: 242 SWLDPLLSAGSKRPLELKDIPLLAPRDRAKSSYKVLKSNWKRCKSE-NPSKPPSLARAIM 300
Query: 296 FSAWKEIVFTAILALLYTLANYVGPYLIDTFVQYLNGEREFKNEGYVLVSTFFVAKIVEC 355
S WKE A+ A L TL +YVGPYLI FV YL G+ F +EGYVL FF +K++E
Sbjct: 301 KSFWKEAACNAVFAGLNTLVSYVGPYLISYFVDYLGGKEIFPHEGYVLAGIFFTSKLIET 360
Query: 356 LAQRHWMFRLQVAGIKMRSVLVSMVYNKGLTLSCQAKQSYTSGEIINFMTVDAERIGDFG 415
+ R W + + G+ +RS L +MVY KGL LS AKQ++TSGEI+N+M VD +RIGD+
Sbjct: 361 VTTRQWYMGVDILGMHVRSALTAMVYRKGLKLSSIAKQNHTSGEIVNYMAVDVQRIGDYS 420
Query: 416 WYMHDPWLVILQVSLALLILYKNLGLASIAALFATVLIMLTNFPLGRLQENFQDKLMGSK 475
WY+HD W++ +Q+ LAL ILYK++G+A++A L AT++ +L PL ++QE++QDKLM +K
Sbjct: 421 WYLHDIWMLPMQIVLALAILYKSVGIAAVATLVATIISILVTIPLAKVQEDYQDKLMTAK 480
Query: 476 DKRMKVTSEILRNMRILKLQGWEMKFLSKIIELRKIEAGWLKKFLYTGAMTSFVFWGAPT 535
D+RM+ TSE LRNMR+LKLQ WE ++ ++ E+R+ E GWL+K LY+ A +F+FW +P
Sbjct: 481 DERMRKTSECLRNMRVLKLQAWEDRYRVRLEEMREEEYGWLRKALYSQAFVTFIFWSSPI 540
Query: 536 FVSVATFGACMLLGIPLESGKILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIASFL 595
FV+ TF + LG L +G +LSALATFRILQEP+ N PD +SM+ QTKVSLDRI+ FL
Sbjct: 541 FVAAVTFATSIFLGTQLTAGGVLSALATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFL 600
Query: 596 CLDDLQSDVVEKHPRGSSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVG 655
++LQ D PRG S AIEI DG F WD S+ PTL I +KV GMRVAVCGTVG
Sbjct: 601 QEEELQEDATVVIPRGLSNIAIEIKDGVFCWDPFSSRPTLSGIQMKVEKGMRVAVCGTVG 660
Query: 656 SGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGNIEDNILFGKPMDREKYDRVL 715
SGKSS +SCILGE+PKISG +++CGT YV+QS WIQSGNIE+NILFG PM++ KY V+
Sbjct: 661 SGKSSFISCILGEIPKISGEVRICGTTGYVSQSAWIQSGNIEENILFGSPMEKTKYKNVI 720
Query: 716 EACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAH 775
+ACSLKKD+E+ S GDQT+IGERGINLSGGQKQR+Q+ARALYQDADIYL DDPFSA+DAH
Sbjct: 721 QACSLKKDIELFSHGDQTIIGERGINLSGGQKQRVQLARALYQDADIYLLDDPFSALDAH 780
Query: 776 TGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSGTDFM 835
TGS LF++ +L L KTV++VTHQVEFLPAADLILV+K+G+I Q+GKY+D+L +GTDF
Sbjct: 781 TGSDLFRDYILSALAEKTVVFVTHQVEFLPAADLILVLKEGRIIQSGKYDDLLQAGTDFK 840
Query: 836 VLVGAHQQALSALD 849
LV AH +A+ A+D
Sbjct: 841 ALVSAHHEAIEAMD 854
|
|
| TAIR|locus:2081755 ABCC14 "ATP-binding cassette C14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1438 (511.3 bits), Expect = 6.5e-265, Sum P(2) = 6.5e-265
Identities = 315/798 (39%), Positives = 467/798 (58%)
Query: 61 KLILFCCFAVSVFNLVLCLLDYFSWFGNDWSGDKLVTLADLVLRTLGWGAICVYLHSQFF 120
K + +S +LVLC+ +F+ D L L V + A+ V LH + F
Sbjct: 98 KTTVVVTIVLSFCSLVLCVSAFFTTRTKLKLVDTLFWLIHAVTNVVI--AVLV-LHLKRF 154
Query: 121 NSGQQRFPLLLRLWWGFYLCLSCYCLVSDIVLYAQHVSLSVHYLVSDVVSVISGFVFCYV 180
S PL LR++W F ++ VS I+ + DV S IS F V
Sbjct: 155 ASPSH--PLTLRIYWVFNFVVTTLFTVSGILHLLSDDPAAASLRADDVASFIS-FPLTAV 211
Query: 181 GFLKRDKXXXXXXXXXXXXXXDSSIGNGEVSSIKSRGTDNVTPYSNASLFSVLTFSWMGS 240
L K + + +V KS +NV+ Y++AS S + WM
Sbjct: 212 LLLVSIKGSTGVVVTTSNVTAPAK--SNDVVVEKS---ENVSLYASASFISKTFWLWMNP 266
Query: 241 LISLGNKKTLDLEDVPQLDSGDSVVGCFPIFRNKLEANRVEGNKVTAFKLTKALFFSAWK 300
L+ G K L+L+ VP L +F +K + + N + T F WK
Sbjct: 267 LLRKGYKSPLNLDQVPTLSPEHRAEKLATLFESKWP--KPQENSRNPVRTTLIRCF--WK 322
Query: 301 EIVFTAILALLYTLANYVGPYLIDTFVQYLNGEREFKNEGYVLVSTFFVAKIVECLAQRH 360
EI FTA+LA++ YVGP LI +FV + +G+R ++GY LV +AK VE L+
Sbjct: 323 EIAFTAVLAIIRLSVIYVGPVLIQSFVDFTSGKRSSPSQGYYLVLILLIAKFVEVLSTHQ 382
Query: 361 WMFRLQVAGIKMRSVLVSMVYNKGLTLSCQAKQSYTSGEIINFMTVDAERIGDFGWYMHD 420
+ F Q G+ +RS L++ +Y KGL L+ A+Q++ G+I+N+M VDA+++ D +H
Sbjct: 383 FNFNSQKLGMLIRSTLITALYKKGLKLTGSARQNHGVGQIVNYMAVDAQQLSDMMLQLHA 442
Query: 421 PWLVILQVSLALLILYKNLGLASIAALFATVLIMLTNFPLGRLQEN-FQDKLMGSKDKRM 479
WL+ LQV+ A+++LY LG + + + I + LG + N +Q LM ++D RM
Sbjct: 443 IWLMPLQVAAAIVLLYNTLGPSVVTTVIGLTGIFVFIL-LGTKRNNRYQFSLMMNRDSRM 501
Query: 480 KVTSEILRNMRILKLQGWEMKFLSKIIELRKIEAGWLKKFLYTGAMTSFVFWGAPTFVSV 539
K T+E+L MR++K Q WE F +I++ R++E GWL KFLY+ A V W P +S
Sbjct: 502 KATNEMLNYMRVIKFQAWEDHFNERILKFREMEFGWLSKFLYSIAGNIIVLWSTPVLISA 561
Query: 540 ATFGACMLLGIPLESGKILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIASFLCLDD 599
TF + LG+ L++G + + F+ILQEPI P ++ + Q +SL R+ +++ +
Sbjct: 562 LTFTTAVFLGVKLDAGTVFTTTTIFKILQEPIRTFPQSMISLSQAMISLGRLDAYMMSRE 621
Query: 600 LQSDVVEKHPRGSSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKS 659
L + VE+ A+EI DG+F+WD + P + +IN +V G A+ GTVGSGKS
Sbjct: 622 LSEETVERSQGCDGNVAVEIKDGSFSWDDEDDEPAIENINFEVKKGELAAIVGTVGSGKS 681
Query: 660 SLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACS 719
SLL+ +LGE+ K+SG +++CGT AYVAQ+ WIQ+G ++DNILFG PM+R KY+ VL+ C
Sbjct: 682 SLLASVLGEMHKLSGKVRVCGTTAYVAQTSWIQNGTVQDNILFGLPMNRSKYNEVLKVCC 741
Query: 720 LKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSH 779
L+KD++I+ FGDQT IGERGINLSGGQKQRIQ+ARA+YQ++D+YL DD FSAVDAHTGS
Sbjct: 742 LEKDMQIMEFGDQTEIGERGINLSGGQKQRIQLARAVYQESDVYLLDDVFSAVDAHTGSD 801
Query: 780 LFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSGTDFMVLVG 839
+FK+ + G L+ KT++ VTHQV+FL D ILVM+DG I Q+GKY+++++SG DF LV
Sbjct: 802 IFKKCVRGALKGKTILLVTHQVDFLHNVDRILVMRDGMIVQSGKYDELVSSGLDFGELVA 861
Query: 840 AHQQALSALDSIEGGPVS 857
AH+ ++++ +E G S
Sbjct: 862 AHE---TSMELVEAGSAS 876
|
|
| TAIR|locus:2043268 ABCC4 "ATP-binding cassette C4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1456 (517.6 bits), Expect = 1.1e-264, Sum P(2) = 1.1e-264
Identities = 312/753 (41%), Positives = 458/753 (60%)
Query: 110 AICVYLHSQFFNSGQQRFPLLLRLWWGFYLCLSCYCLVSDIVLYAQHVSLSVHYLVSDVV 169
A+ V LH + F + PL LR++W L+ V+ I + + S+ DV
Sbjct: 150 AVLV-LHQKRFAA--LNHPLSLRIYWISSFVLTSLFAVTGIFHFLSDAATSLR--AEDVA 204
Query: 170 SVISGFVFCYVGFLKRDKXXXXXXXXXXXXXXDSSIGNGEVSSIKSRGTDNVTPYSNASL 229
S S F FL +S + S++ +DNV+ Y++AS+
Sbjct: 205 SFFS---FPLTAFLLI--ASVRGITGLVTAETNSPTKPSDAVSVEK--SDNVSLYASASV 257
Query: 230 FSVLTFSWMGSLISLGNKKTLDLEDVPQLDSGDSVVGCFPIFRNKLEANRVEGNKVTAFK 289
FS + WM L+S G K L LE VP L +F E++ + ++ ++
Sbjct: 258 FSKTFWLWMNPLLSKGYKSPLTLEQVPTLSPEHKAERLALLF----ESSWPKPSENSSHP 313
Query: 290 LTKALFFSAWKEIVFTAILALLYTLANYVGPYLIDTFVQYLNGEREFKNEGYVLVSTFFV 349
+ L WKEI+FTAILA++ YVGP LI +FV + +G+R +GY LV V
Sbjct: 314 IRTTLLRCFWKEILFTAILAIVRLGVMYVGPVLIQSFVDFTSGKRSSPWQGYYLVLILLV 373
Query: 350 AKIVECLAQRHWMFRLQVAGIKMRSVLVSMVYNKGLTLSCQAKQSYTSGEIINFMTVDAE 409
AK VE L + F Q G+ +RS L++ +Y KGL L+ A+Q++ G+I+N+M VDA+
Sbjct: 374 AKFVEVLTTHQFNFDSQKLGMLIRSTLITALYKKGLKLTGSARQNHGVGQIVNYMAVDAQ 433
Query: 410 RIGDFGWYMHDPWLVILQVSLALLILYKNLGLASIAALFATVLIMLTNFPLGRLQEN-FQ 468
++ D +H WL+ LQV++AL++LY +LG + I A+ + + LG + N +Q
Sbjct: 434 QLSDMMLQLHAIWLMPLQVTVALVLLYGSLGASVITAVIGLTGVFVFIL-LGTQRNNGYQ 492
Query: 469 DKLMGSKDKRMKVTSEILRNMRILKLQGWEMKFLSKIIELRKIEAGWLKKFLYTGAMTSF 528
LMG++D RMK T+E+L MR++K Q WE F +I++ R +E GWL KFLY+ A
Sbjct: 493 FSLMGNRDSRMKATNEMLNYMRVIKFQAWENHFNKRILKFRDMEFGWLSKFLYSIAGNII 552
Query: 529 VFWGAPTFVSVATFGACMLLGIPLESGKILSALATFRILQEPIYNLPDTISMIIQTKVSL 588
V W P +S TF + LG+ L++G + + F+ILQEPI P ++ + Q +SL
Sbjct: 553 VLWSTPVLISALTFATALALGVKLDAGTVFTTTTIFKILQEPIRTFPQSMISLSQAMISL 612
Query: 589 DRIASFLCLDDLQSDVVEKHPRGSSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRV 648
R+ S++ +L D VE+ TA+E+ DG+F+WD N P L DIN KV G
Sbjct: 613 GRLDSYMMSKELSEDAVERALGCDGNTAVEVRDGSFSWDDEDNEPALSDINFKVKKGELT 672
Query: 649 AVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGNIEDNILFGKPMDR 708
A+ GTVGSGKSSLL+ +LGE+ +ISG +++CG+ YVAQ+ WI++G ++DNILFG PM R
Sbjct: 673 AIVGTVGSGKSSLLASVLGEMHRISGQVRVCGSTGYVAQTSWIENGTVQDNILFGLPMVR 732
Query: 709 EKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDP 768
EKY++VL CSL+KDL+++ FGD+T IGERGINLSGGQKQRIQ+ARA+YQ+ D+YL DD
Sbjct: 733 EKYNKVLNVCSLEKDLQMMEFGDKTEIGERGINLSGGQKQRIQLARAVYQECDVYLLDDV 792
Query: 769 FSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDIL 828
FSAVDAHTGS +FK+ + G L+ KTV+ VTHQV+FL D ILVM+DGKI ++GKY++++
Sbjct: 793 FSAVDAHTGSDIFKKCVRGALKGKTVLLVTHQVDFLHNVDCILVMRDGKIVESGKYDELV 852
Query: 829 NSGTDFMVLVGAHQQALSALDSIEGGPVSERIS 861
+SG DF LV AH+ ++++ +E G S ++
Sbjct: 853 SSGLDFGELVAAHE---TSMELVEAGADSAAVA 882
|
|
| TAIR|locus:2077750 ABCC10 "ATP-binding cassette C10" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1399 (497.5 bits), Expect = 1.3e-257, Sum P(2) = 1.3e-257
Identities = 284/642 (44%), Positives = 406/642 (63%)
Query: 206 GNGEVSSIKSRGTDNVTPYSNASLFSVLTFSWMGSLISLGNKKTLDLEDVPQLDSGDSVV 265
G+ S K+ + V+ ++ A LFS L+F W+ SLI GN K L+ ED+P+L +
Sbjct: 189 GDSNGFSEKADFDNRVSQFAKAGLFSTLSFWWLNSLIKRGNVKDLEEEDIPELRKEERAE 248
Query: 266 GCFPIFR-NKLEANRVEGNKVTAFKLTKALFFSAWKEIVFTAILALLYTLANYVGPYLID 324
C+ +F N +E R G+ + K W+E++ + A + +A GP L++
Sbjct: 249 TCYSLFEENLIEQKRRLGSSCQP-SILKVTVLCVWRELLTSGFFAFMKIVAVSAGPLLLN 307
Query: 325 TFVQYLNGEREFKNEGYVLVSTFFVAKIVECLAQRHWMFRLQVAGIKMRSVLVSMVYNKG 384
F+ G F+ EG VL F +K++E L+QR W FR ++ G+++RS+L + + K
Sbjct: 308 AFILVAEGNASFRYEGLVLAVLLFFSKMIESLSQRQWYFRCRIVGLRVRSLLTAAINKKQ 367
Query: 385 LTLSCQAKQSYTSGEIINFMTVDAERIGDFGWYMHDPWLVILQVSLALLILYKNLGLASI 444
L L+ ++ ++ EI+N+ TVDA RIG+F ++ H W Q+ +AL IL+ ++G+A+
Sbjct: 368 LRLNNSSRLIHSGSEIMNYATVDAYRIGEFPYWFHQLWTTSFQLLIALGILFHSVGVATF 427
Query: 445 AALFATVLIMLTNFPLGRLQENFQDKLMGSKDKRMKVTSEILRNMRILKLQGWEMKFLSK 504
+AL +L +L N P+ +LQ FQ +LM S+D+R+K +E L NM++LKL WE F K
Sbjct: 428 SALAVIILTVLCNAPIAKLQNKFQSELMTSQDERLKACNESLVNMKVLKLYAWESHF-KK 486
Query: 505 IIE-LRKIEAGWLKKFLYTGAMTSFVFWGAPTFVSVATFGACMLLGIPLESGKILSALAT 563
+IE LR IE LK A + +FW +P FVS ATF C L IPL + + + +AT
Sbjct: 487 VIEKLRNIELKSLKAVQMRKAYNAVLFWSSPVFVSAATFATCYFLDIPLRASNVFTFVAT 546
Query: 564 FRILQEPIYNLPDTISMIIQTKVSLDRIASFLCLDDLQSDVVEKHPRGS-SETAIEIVDG 622
R++Q+P+ +PD I + IQ KV+ RIA+FL +LQ + R ++ AI I
Sbjct: 547 LRLVQDPVRMIPDVIGVTIQAKVAFSRIATFLEAPELQGGERRRKQRSEGNQNAIIIKSA 606
Query: 623 NFAWDIS-SNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT 681
+F+W+ S P LR+++L+V G +VAVCG VGSGKS+LL+ ILGE P +SGT+ GT
Sbjct: 607 SFSWEEKGSTKPNLRNVSLEVKFGEKVAVCGEVGSGKSTLLAAILGETPCVSGTIDFYGT 666
Query: 682 KAYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGIN 741
AYV+Q+ WIQ+G I DNILFG MD +Y ++ SL KDLE+L GDQT IGERG+N
Sbjct: 667 IAYVSQTAWIQTGTIRDNILFGGVMDEHRYRETIQKSSLDKDLELLPDGDQTEIGERGVN 726
Query: 742 LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQV 801
LSGGQKQRIQ+ARALYQDADIYL DDPFSAVDAHT S LF+E ++ L K V+ VTHQV
Sbjct: 727 LSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFQEYVMDALAGKAVLLVTHQV 786
Query: 802 EFLPAADLILVMKDGKITQAGKYNDILNSGTDFMVLVGAHQQ 843
+FLPA D +L+M DG+IT+A Y ++L DF LV AH++
Sbjct: 787 DFLPAFDSVLLMSDGEITEADTYQELLARSRDFQDLVNAHRE 828
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| DICTYBASE|DDB_G0284867 abcC8 "ABC transporter C family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 1094 (390.2 bits), Expect = 1.6e-204, Sum P(2) = 1.6e-204
Identities = 251/682 (36%), Positives = 387/682 (56%)
Query: 210 VSSIKSRGTDNVTPYSNASLFSVLTFSWMGSLISLGNKKTLDLEDVPQLDSGDSVVGCFP 269
+ S ++ + ++ NA+LFS LTF W+ S++ G+KK L++ DVP L D +
Sbjct: 192 LESYQNLEENEISKEVNANLFSRLTFWWINSVLVKGHKKALEISDVPTLGEIDQSILLSE 251
Query: 270 IFRNKLEANRVEGNKVTAFKLTKALFFSAWKEIVFTAILALLYTLANYVGPYLIDT---F 326
F E + N + L KA F A+ ++ L +VGP L+ F
Sbjct: 252 KFEKAWEEQLKKPNPSLPWALAKA--FGP--HFYIAALFKIIQDLLIFVGPTLLKRVLGF 307
Query: 327 VQYLNGEREFKNEGYVLVSTFFVAKIVECLAQRHWMFRLQVAGIKMRSVLVSMVYNKGLT 386
V+ +G ++ +G + +F+A +V+ L + R G+ +RS +V+ VY K L
Sbjct: 308 VESRDGSQD-TYDGLIYALLYFLAPVVQSLLLHQYFHRCYRVGMWLRSAVVTAVYKKALK 366
Query: 387 LSCQAKQSYTSGEIINFMTVDAERIGDFGWYMHDPWLVILQVSLALLILYKNLGLASIAA 446
S ++ T GEI+N M+VDA++ D Y+H W LQ++++L++LY+ L AS+ A
Sbjct: 367 TSL--REGTTIGEIVNLMSVDAQKFMDLCPYLHMIWSAPLQLAISLVLLYRILN-ASVFA 423
Query: 447 LFATVLIMLT-NFPLGRLQENFQDKLMGSKDKRMKVTSEILRNMRILKLQGWEMKFLSKI 505
+L+M+ N + L + Q M KD+R K +E+L ++++KL WE F+ +
Sbjct: 424 GLGIMLVMIPINLAISNLAKKRQTISMKLKDRRTKAVNEVLNGIKVIKLYSWEQSFMDHV 483
Query: 506 IELRKIEAGWLKKFLYTGAMTSFVFWG-APTFVSVATFGACMLLGIPLESGKILSALATF 564
E+R E +K Y S + W +P FVSV+TF +L G L + + AL+ F
Sbjct: 484 NEIRNKELDVMKAIKYIQGF-SLLLWSMSPVFVSVSTFTVYILTGQVLSATQAFPALSLF 542
Query: 565 RILQEPIYNLPDTISMIIQTKVSLDRIASFLCLDDLQSDVVEKHPRGSSETAIEIVDGNF 624
++Q PI LP +S II+ VS+ R+ FL DL +VVE H A++I +
Sbjct: 543 NVMQFPINMLPSVVSSIIEASVSVARLQKFLLKKDLDPNVVEHHINEPG-IAVKIDNATL 601
Query: 625 AWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAY 684
W+ N P L DINL + G VA+ G VGSGKSS++S ++G++ K GT+ + G+ A
Sbjct: 602 EWE--PNKPILHDINLTIKKGELVAIVGQVGSGKSSIVSSLVGDLDKTKGTVAVNGSVAL 659
Query: 685 VAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSG 744
V+Q WIQ+ +++NILF K ++++KY V++AC L+ D++IL GDQT IGE+GINLSG
Sbjct: 660 VSQQAWIQNATLKNNILFAKELNQDKYQSVVQACCLEPDIKILPGGDQTEIGEKGINLSG 719
Query: 745 GQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLL---GLLRSKTVIYVTHQV 801
GQKQR+ IARA+Y +ADIY+FDDP SAVDAH G +FK VL G+L +KT I VTH V
Sbjct: 720 GQKQRVSIARAVYNNADIYIFDDPLSAVDAHVGKAIFKNVLSNQDGILCNKTRILVTHAV 779
Query: 802 EFLPAADLILVMKDGKITQAGKYNDILNSGTDFMVLVGAHQQALSALDSIEGGPVSERIS 861
+LP D I++MKDG+I + G +N ++ +G+ F L+ +H + L + S
Sbjct: 780 HYLPYVDRIILMKDGRIVEEGDFNTLIEAGSHFTELM-SHDEQQQQLQQQQAPDKSS--D 836
Query: 862 MNKENGGMDTTNGVTMKEGNED 883
N++ GG D +E NE+
Sbjct: 837 SNEQIGGGDNKESENNEEQNEE 858
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| UNIPROTKB|F1PHV0 ABCC2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1036 (369.7 bits), Expect = 5.4e-201, Sum P(4) = 5.4e-201
Identities = 221/546 (40%), Positives = 334/546 (61%)
Query: 290 LTKALFFSAWKEIVFTAILALLYTLANYVGPYLIDTFVQYLNGEREFKNEGYVLVSTFFV 349
L K+LF + + ++ + +L L++ L ++ P L+ + + N + GY FFV
Sbjct: 310 LVKSLFKTFYVILLKSFLLKLVFDLLTFLNPQLLKLLISFANDPDMYVWTGYFYSVLFFV 369
Query: 350 AKIVECLAQRHWMFRLQVAGIKMRSVLVSMVYNKGLTLSCQAKQSYTSGEIINFMTVDAE 409
+++ L + + + G+ +R+ +++ +Y K LTLS QA++ YT GE +N M+VDA+
Sbjct: 370 VALIQSLCLQSYFQMCFMLGVNVRTTIMASIYKKALTLSNQARKQYTIGETVNLMSVDAQ 429
Query: 410 RIGDFGWYMHDPWLVILQVSLALLILYKNLGLASIAALFATVLIMLTNFPLGRLQENFQD 469
++ D ++H W +LQ++L++ L+ LG + +A + +L++ N L Q
Sbjct: 430 KLMDVTNFIHLLWSNVLQIALSIYFLWAELGPSILAGVGVMILLIPVNGLLASKSRAIQV 489
Query: 470 KLMGSKDKRMKVTSEILRNMRILKLQGWEMKFLSKIIELRKIEAGWLKKFLYTGAMTS-- 527
K M +KDKR+K+ +EIL ++ILK WE F +++ ELRK E LK L G M S
Sbjct: 490 KNMKNKDKRLKIMNEILSGIKILKYFAWEPSFKNQVHELRKKE---LKNLLTFGQMQSVM 546
Query: 528 -FVFWGAPTFVSVATFGACMLLGIP--LESGKILSALATFRILQEPIYNLPDTISMIIQT 584
F+ + P VSV TF L+ L++ K +++ F IL+ P+ LP IS ++Q
Sbjct: 547 VFLLYLTPVLVSVITFSVYTLVDSNNVLDAEKAFTSITLFNILRFPLSMLPMVISSLLQA 606
Query: 585 KVSLDRIASFLCLDDLQSDVVEKHPRGSSETAIEIVDGNFAWDISSNNPTLRDINLKVFH 644
VS +R+ +L DDL + + + SS+ A++ + +F WD S T+RD+NL +
Sbjct: 607 SVSRERLEKYLGGDDLDTSAIRRD--SSSDKAVQFSEASFTWDRDSE-ATIRDVNLDIMP 663
Query: 645 GMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGNIEDNILFGK 704
G VAV GTVGSGKSSL+S +LGE+ + G + + GT AYV Q WIQ+G I+DNILFG
Sbjct: 664 GQLVAVVGTVGSGKSSLMSAMLGEMEDVHGHITIKGTIAYVPQQSWIQNGTIKDNILFGS 723
Query: 705 PMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYL 764
+D ++Y +VLEAC+L DLE+L GD IGE+GINLSGGQKQRI +ARA YQ++DIY+
Sbjct: 724 ELDEKRYQQVLEACALLPDLEVLPGGDLAEIGEKGINLSGGQKQRISLARATYQNSDIYV 783
Query: 765 FDDPFSAVDAHTGSHLFKEVL--LGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAG 822
DDP SAVDAH G H+F +VL GLL+ KT + VTH + FLP D I+V+ +G I + G
Sbjct: 784 LDDPLSAVDAHVGRHIFNKVLGPNGLLKGKTRLLVTHSIHFLPQVDEIVVLGNGTILEKG 843
Query: 823 KYNDIL 828
YN +L
Sbjct: 844 SYNTLL 849
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| UNIPROTKB|E1C6S5 ABCC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1015 (362.4 bits), Expect = 8.4e-201, Sum P(4) = 8.4e-201
Identities = 227/621 (36%), Positives = 361/621 (58%)
Query: 290 LTKALFFSAWKEIVFTAILALLYTLANYVGPYLIDTFVQYLNGEREFKNEGYVLVSTFFV 349
L KALF + + ++ + L++ + +V P L+ + +++ F +GY+ F+
Sbjct: 329 LMKALFRTFLQNLMMSVAFKLVHDVLVFVSPQLLKLLITFVSDAEAFAWQGYLYSILLFL 388
Query: 350 AKIVECLA-QRHWMFRLQVAGIKMRSVLVSMVYNKGLTLSCQAKQSYTSGEIINFMTVDA 408
+++ L Q+++ Q+ G +R+ L++ +Y K LT+S ++ T GE +N M+ DA
Sbjct: 389 TAMLQSLCLQQYFNLCFQL-GTNVRASLIAAIYKKALTMSSATRKESTVGETVNLMSADA 447
Query: 409 ERIGDFGWYMHDPWLVILQVSLALLILYKNLGLASIAALFATVLIMLTNFPLGRLQENFQ 468
+R D ++H W LQ+ L+++ L+ LG + +A L VL++ N L ++ Q
Sbjct: 448 QRFMDMANFVHQLWSSPLQIILSIVFLWGELGPSVLAGLAVMVLLIPINGFLVNKSKHIQ 507
Query: 469 DKLMGSKDKRMKVTSEILRNMRILKLQGWEMKFLSKIIELRKIEAGWLKKFLYTGAMTSF 528
+ M +KD+RMK+ E+L ++ILKL WE F +I E+R E L KF Y +++ F
Sbjct: 508 VRNMKNKDERMKIMGEVLNGIKILKLFAWEPSFEKRINEIRACELKDLLKFSYLQSVSIF 567
Query: 529 VFWGAPTFVSVATFGACMLL--GIPLESGKILSALATFRILQEPIYNLPDTISMIIQTKV 586
VF AP VS+A+F +L+ L++ K ++++ F +L+ P+ LP +S ++QT V
Sbjct: 568 VFTCAPFLVSLASFAVYVLVDENNVLDAQKAFTSISLFNVLRFPMAMLPLVLSSMVQTNV 627
Query: 587 SLDRIASFLCLDDLQSDVVEKHPRGSSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGM 646
S +R+ +L +DL + + H +A+ + F W+ N +RD+ L + G
Sbjct: 628 SKERLERYLGGEDLDTSAI--HHDSIPGSAVRFTEATFTWE-HDGNAVIRDVTLDIKPGS 684
Query: 647 RVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGNIEDNILFGKPM 706
VAV G VGSGKSSL+S +LGE+ I G + + G+ AYV Q WIQ+ ++DNILFG +
Sbjct: 685 LVAVVGAVGSGKSSLISAMLGEMENIKGHINIQGSLAYVPQQAWIQNATLKDNILFGSEL 744
Query: 707 DREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFD 766
D +Y +V++AC+L DLE+L GDQT IGE+GINLSGGQKQR+ +ARA+Y DADIY+ D
Sbjct: 745 DEARYQKVIKACALLPDLELLPAGDQTEIGEKGINLSGGQKQRVSLARAVYNDADIYILD 804
Query: 767 DPFSAVDAHTGSHLFKEVL--LGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKY 824
DP SAVDAH G HLF+ VL GLL+ KT I VTH + FLP D I+V+ G +++ G Y
Sbjct: 805 DPLSAVDAHVGKHLFEHVLGPKGLLQKKTQILVTHSISFLPQVDNIVVLVAGAVSEHGSY 864
Query: 825 NDILNSGTDFMVLVGAHQQALSALDSIEGGPVSERISMNKENGGMDTTNGVTMKEGNEDI 884
+ +L + GA Q L++ S E G E + E G D + ++EG +D+
Sbjct: 865 STLLANR-------GAFAQFLNSYGSQEEGAAEETTADGIEEQG-DESMEPCVEEGPDDV 916
Query: 885 QTDKVDEQYYIPSARELSRLV 905
T + + I +E +R +
Sbjct: 917 VTMTLKREASI-HRKEFTRSI 936
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.3 | 0.976 |
| 3rd Layer | 3.6.3.44 | 0.991 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | 4329049 | ABC transporter family protein, putative (1198 aa) | |||||||||
(Oryza sativa Japonica) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | 4349120 | diacylglycerol kinase, putative, expressed (757 aa) | • | 0.669 | |||||||
 | 4343607 | diacylglycerol kinase, putative, expressed (377 aa) | • | 0.669 | |||||||
 | LOC_Os04g41180.1 | hypothetical protein (152 aa) | • | 0.669 | |||||||
 | 4336222 | DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative, expressed (205 aa) | • | 0.669 | |||||||
 | 4327845 | diacylglycerol kinase, putative, expressed (521 aa) | • | 0.669 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1300 | |||
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 1e-126 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 1e-124 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 1e-122 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 1e-112 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 1e-107 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 1e-107 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 1e-106 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 2e-97 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 4e-93 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 5e-77 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 5e-76 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 1e-72 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-71 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 3e-64 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 2e-62 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 3e-62 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 2e-61 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-58 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 7e-56 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 1e-53 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 2e-52 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 4e-52 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 6e-52 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 2e-51 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 2e-49 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 1e-48 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-46 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 3e-43 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 7e-43 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 9e-43 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 3e-42 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 4e-42 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 3e-41 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 7e-40 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 1e-39 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 1e-39 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 2e-38 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 3e-38 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 4e-38 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 2e-37 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 3e-37 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 4e-37 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 4e-37 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 7e-37 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 1e-36 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 3e-36 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 5e-36 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 5e-36 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 6e-36 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 6e-35 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 7e-35 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 9e-35 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 2e-34 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 9e-34 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 9e-34 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 5e-33 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 1e-32 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 2e-32 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 4e-32 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 6e-32 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 1e-31 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 1e-31 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 2e-31 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 2e-31 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 2e-31 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 4e-31 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 2e-30 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 2e-30 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 2e-30 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 2e-30 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 3e-30 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 8e-30 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 3e-29 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 4e-29 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 2e-28 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 4e-28 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 7e-28 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 7e-28 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 8e-28 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 9e-28 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 1e-27 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-27 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 2e-27 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 5e-27 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 7e-27 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 2e-26 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 3e-26 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 3e-26 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 5e-26 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 1e-25 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 1e-25 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 3e-25 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 3e-25 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 3e-25 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 4e-25 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 4e-25 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 5e-25 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 6e-25 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 1e-24 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 2e-24 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 3e-24 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 4e-24 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 9e-24 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 1e-23 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 1e-23 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 2e-23 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 2e-23 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 2e-23 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 3e-23 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 3e-23 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 4e-23 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 6e-23 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 8e-23 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 1e-22 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 1e-22 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 1e-22 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 2e-22 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 2e-22 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 3e-22 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 3e-22 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 3e-22 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 3e-22 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 3e-22 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 4e-22 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 7e-22 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 7e-22 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 1e-21 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 1e-21 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 1e-21 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 1e-21 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-21 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 2e-21 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 2e-21 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 3e-21 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 3e-21 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 5e-21 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 7e-21 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 1e-20 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 1e-20 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 2e-20 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 2e-20 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 2e-20 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 2e-20 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 4e-20 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 6e-20 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 8e-20 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 1e-19 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 2e-19 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 2e-19 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 2e-19 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 2e-19 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 3e-19 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 3e-19 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 4e-19 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 5e-19 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 5e-19 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 5e-19 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 6e-19 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 6e-19 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 6e-19 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 7e-19 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 9e-19 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 1e-18 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 1e-18 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 1e-18 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 2e-18 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 2e-18 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 2e-18 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 2e-18 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 2e-18 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 2e-18 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 2e-18 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 3e-18 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 3e-18 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 5e-18 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 5e-18 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 6e-18 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 6e-18 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 1e-17 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 2e-17 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 2e-17 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 2e-17 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 2e-17 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 2e-17 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 3e-17 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 3e-17 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 4e-17 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 4e-17 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 4e-17 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 5e-17 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 6e-17 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 7e-17 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 9e-17 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 9e-17 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 9e-17 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 1e-16 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 1e-16 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 2e-16 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-16 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 2e-16 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 2e-16 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 2e-16 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 2e-16 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 2e-16 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 2e-16 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 3e-16 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 3e-16 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 3e-16 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 3e-16 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 5e-16 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 6e-16 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 6e-16 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 7e-16 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 8e-16 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 8e-16 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 9e-16 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 9e-16 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 1e-15 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 1e-15 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 1e-15 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 1e-15 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 2e-15 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 2e-15 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 2e-15 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 2e-15 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 2e-15 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 2e-15 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 2e-15 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 2e-15 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 2e-15 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 3e-15 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 3e-15 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 3e-15 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 3e-15 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 4e-15 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 4e-15 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 5e-15 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 5e-15 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 6e-15 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 6e-15 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 7e-15 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 8e-15 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 1e-14 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 2e-14 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 2e-14 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 2e-14 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 2e-14 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 2e-14 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 2e-14 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 2e-14 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 3e-14 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 3e-14 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 3e-14 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 3e-14 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 3e-14 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 4e-14 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 4e-14 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 4e-14 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 4e-14 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 5e-14 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 5e-14 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 6e-14 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 6e-14 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 6e-14 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 6e-14 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 7e-14 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 7e-14 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 7e-14 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 8e-14 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 8e-14 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 1e-13 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 1e-13 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 1e-13 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-13 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-13 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 1e-13 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 1e-13 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 1e-13 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 1e-13 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 1e-13 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 1e-13 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 2e-13 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 2e-13 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 2e-13 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 2e-13 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 2e-13 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 2e-13 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 2e-13 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 2e-13 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 2e-13 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 2e-13 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 2e-13 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 3e-13 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 3e-13 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 3e-13 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 4e-13 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 4e-13 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 4e-13 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 4e-13 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 4e-13 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 4e-13 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 4e-13 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 5e-13 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 5e-13 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 5e-13 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 5e-13 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 6e-13 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 6e-13 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 6e-13 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 7e-13 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 8e-13 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-12 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 1e-12 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 1e-12 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 1e-12 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 1e-12 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 1e-12 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 1e-12 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 1e-12 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 1e-12 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 1e-12 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 1e-12 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 1e-12 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-12 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 2e-12 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 2e-12 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 2e-12 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 2e-12 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 2e-12 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 3e-12 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 3e-12 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 3e-12 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 3e-12 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 3e-12 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 3e-12 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 4e-12 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 4e-12 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 5e-12 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 5e-12 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 5e-12 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 5e-12 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 6e-12 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 8e-12 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 8e-12 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 8e-12 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 8e-12 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 8e-12 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 9e-12 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 9e-12 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 1e-11 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 1e-11 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 1e-11 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 1e-11 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 1e-11 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 1e-11 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 1e-11 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 1e-11 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 2e-11 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 2e-11 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 2e-11 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 2e-11 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 2e-11 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 2e-11 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 2e-11 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 2e-11 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 2e-11 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 2e-11 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 2e-11 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 2e-11 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 2e-11 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 3e-11 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 3e-11 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 3e-11 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 3e-11 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 3e-11 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 3e-11 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 3e-11 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 3e-11 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 3e-11 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 4e-11 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 4e-11 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 4e-11 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 4e-11 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 4e-11 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 4e-11 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 4e-11 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 5e-11 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 5e-11 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 5e-11 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 5e-11 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 6e-11 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 6e-11 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 6e-11 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 6e-11 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 7e-11 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 7e-11 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 7e-11 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 1e-10 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 1e-10 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 1e-10 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 1e-10 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 1e-10 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 1e-10 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 1e-10 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 1e-10 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 1e-10 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 2e-10 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 2e-10 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 2e-10 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 2e-10 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 2e-10 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 2e-10 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 2e-10 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 3e-10 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 3e-10 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 3e-10 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 3e-10 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 3e-10 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 3e-10 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 4e-10 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 4e-10 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 4e-10 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 4e-10 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 5e-10 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 5e-10 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 5e-10 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 5e-10 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 6e-10 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 6e-10 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 6e-10 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 6e-10 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 6e-10 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 7e-10 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 7e-10 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 8e-10 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 8e-10 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 8e-10 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 1e-09 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 1e-09 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 1e-09 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 1e-09 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 1e-09 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 1e-09 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 2e-09 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 2e-09 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 2e-09 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-09 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 2e-09 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 2e-09 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 3e-09 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 3e-09 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 3e-09 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 4e-09 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 4e-09 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 4e-09 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 4e-09 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 4e-09 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 4e-09 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 5e-09 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 5e-09 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 5e-09 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 6e-09 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 6e-09 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 7e-09 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 7e-09 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 7e-09 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 8e-09 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 8e-09 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 8e-09 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 9e-09 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 1e-08 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 1e-08 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 1e-08 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 1e-08 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 1e-08 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 1e-08 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 1e-08 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 2e-08 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 2e-08 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 2e-08 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 2e-08 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 2e-08 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 2e-08 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 2e-08 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 2e-08 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 2e-08 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-08 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 2e-08 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 2e-08 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 2e-08 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 3e-08 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 3e-08 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 3e-08 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 3e-08 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 3e-08 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 4e-08 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 4e-08 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 4e-08 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 4e-08 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 5e-08 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 5e-08 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 5e-08 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 6e-08 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 6e-08 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 6e-08 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 7e-08 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 7e-08 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 8e-08 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 8e-08 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 8e-08 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 8e-08 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 8e-08 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 8e-08 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 9e-08 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-07 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 1e-07 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 1e-07 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 1e-07 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 1e-07 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 1e-07 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 1e-07 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 1e-07 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 2e-07 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 2e-07 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-07 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 2e-07 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 2e-07 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 2e-07 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 2e-07 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 2e-07 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 2e-07 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 3e-07 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 3e-07 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 3e-07 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 3e-07 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 4e-07 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 4e-07 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 4e-07 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 4e-07 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 4e-07 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 5e-07 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 5e-07 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 5e-07 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 5e-07 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 5e-07 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 6e-07 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 6e-07 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 6e-07 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 6e-07 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 7e-07 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 7e-07 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 7e-07 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 8e-07 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 9e-07 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 1e-06 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 1e-06 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 1e-06 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 1e-06 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 1e-06 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 1e-06 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 1e-06 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-06 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 2e-06 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 2e-06 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 2e-06 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 2e-06 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 2e-06 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 3e-06 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 3e-06 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 3e-06 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 3e-06 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 4e-06 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 4e-06 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 4e-06 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 4e-06 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 4e-06 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 5e-06 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 6e-06 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 6e-06 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 7e-06 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 7e-06 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 7e-06 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 9e-06 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 9e-06 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 1e-05 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 1e-05 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 1e-05 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 1e-05 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 1e-05 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 1e-05 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 1e-05 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 1e-05 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 2e-05 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-05 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 2e-05 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 2e-05 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 2e-05 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 3e-05 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 3e-05 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 3e-05 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 3e-05 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 4e-05 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 4e-05 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 4e-05 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 4e-05 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 4e-05 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 4e-05 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 4e-05 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 4e-05 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 4e-05 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 5e-05 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 5e-05 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 7e-05 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 7e-05 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 8e-05 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 8e-05 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 8e-05 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 8e-05 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 8e-05 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 8e-05 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 9e-05 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 9e-05 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 1e-04 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 1e-04 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 1e-04 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-04 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-04 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 2e-04 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 2e-04 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 3e-04 | |
| PRK00635 | 1809 | PRK00635, PRK00635, excinuclease ABC subunit A; Pr | 3e-04 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 4e-04 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 4e-04 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 4e-04 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 6e-04 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 7e-04 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 7e-04 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 7e-04 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 8e-04 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 8e-04 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 9e-04 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 0.001 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 0.001 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 0.001 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 0.001 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 0.001 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 0.002 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 0.002 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 0.002 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 0.003 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 0.003 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 0.003 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 0.003 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 0.003 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 0.004 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 0.004 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 425 bits (1094), Expect = e-126
Identities = 238/696 (34%), Positives = 373/696 (53%), Gaps = 51/696 (7%)
Query: 220 NVTPYSNASLFSVLTFSWMGSLISLGNKKTLDLEDVPQLDSGDSVVGCFPIFRN------ 273
N P S+AS S +TF W+ + G ++ L+ D+ L+ D+ P+
Sbjct: 200 NPCPESSASFLSRITFWWITGMAVYGYRQPLEESDLWSLNKEDTSEMVVPVLVENWKKEC 259
Query: 274 --------------KLEANRVEGNKVTAFKLTKALFFSA----WKEIVFTAILA------ 309
K + +++ A + +AL + K +F +
Sbjct: 260 KKTRKQPVSAVYGKKDPSKPKGSSQLDANEEVEALIVKSPHKPRKPSLFKVLYKTFGPYF 319
Query: 310 -------LLYTLANYVGPYLIDTFVQYLNGEREFKNEGYVLVSTFFVAKIVECLAQRHWM 362
++ L ++GP ++ ++++N +GY FV ++ L +
Sbjct: 320 LMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMAPDWQGYFYTGLLFVCACLQTLILHQYF 379
Query: 363 FRLQVAGIKMRSVLVSMVYNKGLTLSCQAKQSYTSGEIINFMTVDAERIGDFGWYMHDPW 422
V+G+++++ ++ VY K L ++ A++S T GEI+N M+VDA+R D Y++ W
Sbjct: 380 HICFVSGMRIKTAVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLATYINMIW 439
Query: 423 LVILQVSLALLILYKNLGLASIAALFATVLIMLTNFPLGRLQENFQDKLMGSKDKRMKVT 482
LQV LAL L+ NLG + +A + VL++ N + + +Q M SKD R+K+
Sbjct: 440 SAPLQVILALYFLWLNLGPSVLAGVAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLM 499
Query: 483 SEILRNMRILKLQGWEMKFLSKIIELRKIEAGWLKKFLYTGAMTSFVFWGAPTFVSVATF 542
+EIL +++LKL WE+ FL K+ +R+ E LKK Y A+ +F + P V++ TF
Sbjct: 500 NEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTPFLVALITF 559
Query: 543 GACMLLGIP--LESGKILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIASFLCLDDL 600
+ + L++ K +LA F IL+ P+ LP IS I+Q VSL R+ FL ++L
Sbjct: 560 AVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEEL 619
Query: 601 QSDVVEKHPRGSSE-TAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKS 659
+ D +E+ E +I + + F W PTL I + G VAV G VG GKS
Sbjct: 620 EPDSIERRTIKPGEGNSITVHNATFTW-ARDLPPTLNGITFSIPEGALVAVVGQVGCGKS 678
Query: 660 SLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACS 719
SLLS +L E+ K+ G + + G+ AYV Q WIQ+ ++ +NILFGK ++ + Y +VLEAC+
Sbjct: 679 SLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACA 738
Query: 720 LKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSH 779
L DLEIL GD+T IGE+G+NLSGGQKQR+ +ARA+Y +ADIYLFDDP SAVDAH G H
Sbjct: 739 LLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKH 798
Query: 780 LFKEVL--LGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILN---SGTDF 834
+F+ V+ G+L++KT I VTH + +LP D+I+VM GKI++ G Y ++L + +F
Sbjct: 799 IFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEF 858
Query: 835 MVLVGAHQQALSALDS---IEGGPVSERISMNKENG 867
+ +Q DS + G E + ENG
Sbjct: 859 LRTYAPDEQQGHLEDSWTALVSGEGKEAKLI--ENG 892
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 382 bits (984), Expect = e-124
Identities = 130/221 (58%), Positives = 174/221 (78%)
Query: 1053 GEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGE 1112
G+++ N+ +RY P+LP VL+ ++ + G K GIVGRTGSGKS+L+ LFR+VE ++G
Sbjct: 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGS 60
Query: 1113 IVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGD 1172
I+IDG++IS IGLHDLRSR+SIIPQDP +F GT+R+NLDP EY DEE+W+AL++ L +
Sbjct: 61 ILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKE 120
Query: 1173 EVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQ 1232
V + G LD+ V E GEN S+GQRQL+CL R LL+KSK+LVLDEATASVD TD LIQ+
Sbjct: 121 FVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQK 180
Query: 1233 TLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSP 1273
T+R+ F DCTV+TIAHR+ ++IDSD +L+L G + E+DSP
Sbjct: 181 TIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDSP 221
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 416 bits (1072), Expect = e-122
Identities = 220/675 (32%), Positives = 367/675 (54%), Gaps = 20/675 (2%)
Query: 217 GTDNVTPYSNASLFSVLTFSWMGSLISLGNKKTLDLEDVPQLDSGDSVVGCFPIFRNKLE 276
G + + P +A++FS + F WM L+ LG K+ L +DV +LD+ D + F+ +
Sbjct: 222 GGEQICPERHANIFSRIFFGWMTPLMQLGYKRPLTEKDVWKLDTWDQTETLYRSFQKCWD 281
Query: 277 ANRVEGNKVTAFKLTKALFFSAWKEIVFTAILALLYTLANYVGPYLIDTFVQYL-NGERE 335
+ L +AL S + L+ +VGP L++ ++ + NGE
Sbjct: 282 EELKKPKP----WLLRALNNSLGGRFWLGGFFKIGNDLSQFVGPLLLNLLLESMQNGEPA 337
Query: 336 FKNEGYVLVSTFFVAKIVECLAQRHWMFRLQVAGIKMRSVLVSMVYNKGLTLSCQAKQSY 395
+ GY+ + FV ++ L + + + G ++RS LV+ V+ K L L+ + ++ +
Sbjct: 338 WI--GYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRLTHEGRKKF 395
Query: 396 TSGEIINFMTVDAERIGDFGWYMHDPWLVILQVSLALLILYKNLGLASI-AALFATVLIM 454
TSG+I N MT DAE + +H W ++ +A+++LY+ LG+AS+ +L ++
Sbjct: 396 TSGKITNLMTTDAEALQQICQQLHTLWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLMFP 455
Query: 455 LTNFPLGRLQENFQDKLMGSKDKRMKVTSEILRNMRILKLQGWEMKFLSKIIELRKIEAG 514
+ F + ++Q+ ++ L + DKR+ + +E+L M +K WE F SK+ +R E
Sbjct: 456 IQTFIISKMQKLTKEGLQRT-DKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELS 514
Query: 515 WLKKFLYTGAMTSFVFWGAPTFVSVATFGACMLLGIPLESGKILSALATFRILQEPIYNL 574
W +K A SF+ P V+V +FG LLG L + ++L+ F +L+ P++ L
Sbjct: 515 WFRKAQLLSAFNSFILNSIPVLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFML 574
Query: 575 PDTISMIIQTKVSLDRIASFLCLDDLQSDVVEKHPRGSSETAIEIVDGNFAWDISSNNPT 634
P+ I+ + VSL R+ L ++ ++ P AI I +G F+WD + PT
Sbjct: 575 PNLITQAVNANVSLKRLEELLLAEERV--LLPNPPLEPGLPAISIKNGYFSWDSKAERPT 632
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKIS-GTLKLCGTKAYVAQSPWIQS 693
L +INL V G VA+ G+ G GK+SL+S +LGE+P S ++ + GT AYV Q WI +
Sbjct: 633 LSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFN 692
Query: 694 GNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIA 753
+ DNILFG P D E+Y+R ++ +L+ DL++L GD T IGERG+N+SGGQKQR+ +A
Sbjct: 693 ATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMA 752
Query: 754 RALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVM 813
RA+Y ++D+Y+FDDP SA+DAH G +F + + LR KT + VT+Q+ FL D I+++
Sbjct: 753 RAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILV 812
Query: 814 KDGKITQAGKYNDILNSGTDFMVLVGAHQQALSALDSIEGGPVSERISMN---KENGGMD 870
+G I + G Y ++ N+G F L+ + A + +E E + NG +
Sbjct: 813 HEGMIKEEGTYEELSNNGPLFQKLM---ENAGKMEEYVEENGEEEDDQTSSKPVANGNAN 869
Query: 871 --TTNGVTMKEGNED 883
+ + K+ E
Sbjct: 870 NLKKDSSSKKKSKEG 884
|
Length = 1622 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 385 bits (990), Expect = e-112
Identities = 172/390 (44%), Positives = 246/390 (63%), Gaps = 1/390 (0%)
Query: 891 EQYYIPSARELSRLVGVCKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPK 950
+++Y+ S+R+L RL V ++PV HF+ET+ G + IR+F+++ RF + VD +
Sbjct: 1122 QRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAY 1181
Query: 951 FHIAGAMEWLCFRLDMLSSLTFAFSLVLLISIPKGVIEPAIAGLAVTYGLNLNMLQAWVI 1010
+ A WL RL+ + + F+ L I + + + GL+V+Y L + W++
Sbjct: 1182 YPSIVANRWLAVRLECVGNCIVLFA-ALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLV 1240
Query: 1011 WNLCNLENKIISVERILQYTCISSEPPLVIEESRPDCSWPTHGEVDILNLQVRYAPHLPL 1070
+E I++VER+ +Y+ E P I+E+ P WP G V+ N +RY L L
Sbjct: 1241 RMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLDL 1300
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS 1130
VLR + T GG K GIVGRTG+GKS+L LFRI E GEI+IDG+NI+ IGLHDLR
Sbjct: 1301 VLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRF 1360
Query: 1131 RLSIIPQDPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGE 1190
+++IIPQDP +F G++R NLDP +Y DEE+W AL+ L V KLD E GE
Sbjct: 1361 KITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGE 1420
Query: 1191 NWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRI 1250
N S+GQRQLVCL R LL+K+K+LVLDEATA+VD TDNLIQ T+R F DCTV+TIAHR+
Sbjct: 1421 NLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRL 1480
Query: 1251 TSVIDSDMVLLLSHGIIEEYDSPTKLLENK 1280
+++D V++L G + E+ +P+ LL+ +
Sbjct: 1481 NTIMDYTRVIVLDKGEVAEFGAPSNLLQQR 1510
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 372 bits (956), Expect = e-107
Identities = 174/414 (42%), Positives = 250/414 (60%), Gaps = 13/414 (3%)
Query: 893 YYIPSARELSRLVGVCKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFH 952
YY +ARE+ RL + ++PV F E ++G +TIR++ R + N + +D R
Sbjct: 1072 YYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLV 1131
Query: 953 IAGAMEWLCFRLDMLSSLTFAFSLVLLISIPKGVIEPAIA-----GLAVTYGLNLNMLQA 1007
+ WL RL+ L L + + + G E A GL ++Y LN+ L
Sbjct: 1132 NMSSNRWLAIRLETLGGLMIWLTASFAV-MQNGRAENQAAFASTMGLLLSYALNITSLLT 1190
Query: 1008 WVIWNLCNLENKIISVERILQYTCISSEPPLVIEESRPDCSWPTHGEVDILNLQVRYAPH 1067
V+ EN + +VER+ Y + SE PLVIE +RP WP+ G + ++ +RY P
Sbjct: 1191 AVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE 1250
Query: 1068 LPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHD 1127
LP VL GL+ K GIVGRTG+GKS+++ LFRIVE G I+IDG +IS GL D
Sbjct: 1251 LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMD 1310
Query: 1128 LRSRLSIIPQDPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTE 1187
LR L IIPQ P +F GTVR NLDP E+ D ++WE+L++ L D +R LD+ V+E
Sbjct: 1311 LRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSE 1370
Query: 1188 NGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIA 1247
GEN+S+GQRQL+ L R LL++SK+LVLDEATA+VD TD LIQ+T+R+ F CT++ IA
Sbjct: 1371 AGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIA 1430
Query: 1248 HRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLV-------AEYTQR 1294
HR+ ++ID D +L+L G + E+D+P LL N+ S+F+++V A+Y +
Sbjct: 1431 HRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQSTGAANAQYLRS 1484
|
Length = 1622 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 372 bits (956), Expect = e-107
Identities = 205/625 (32%), Positives = 346/625 (55%), Gaps = 10/625 (1%)
Query: 216 RGTDNVTPYSNASLFSVLTFSWMGSLISLGNKKTLDLEDVPQLDSGDSVVGCFPIFRNKL 275
RG +N+ P AS+FS + FSWM L+ LG +K + +DV QLD D +
Sbjct: 221 RGGENICPERYASIFSRIYFSWMTPLMQLGYRKPITEKDVWQLDQWDQT----ETLIKRF 276
Query: 276 EANRVEGNKVTAFKLTKALFFSAWKEIVFTAILALLYTLANYVGPYLIDTFVQYLNGERE 335
+ E ++ L +AL S I + + L+ +VGP ++ +Q + E +
Sbjct: 277 QRCWTEESRRPKPWLLRALNNSLGGRFWLGGIFKIGHDLSQFVGPVILSHLLQSMQ-EGD 335
Query: 336 FKNEGYVLVSTFFVAKIVECLAQRHWMFRLQVAGIKMRSVLVSMVYNKGLTLSCQAKQSY 395
GYV F L + + + G ++RS LV+ +++K L L+ +A++++
Sbjct: 336 PAWVGYVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTLVAAIFHKSLRLTHEARKNF 395
Query: 396 TSGEIINFMTVDAERIGDFGWYMHDPWLVILQVSLALLILYKNLGLASI-AALFATVLIM 454
SG++ N +T DA + +H W ++ +++++LY+ LG+AS+ +L +LI
Sbjct: 396 ASGKVTNMITTDANALQQIAEQLHGLWSAPFRIIVSMVLLYQQLGVASLFGSLILFLLIP 455
Query: 455 LTNFPLGRLQENFQDKLMGSKDKRMKVTSEILRNMRILKLQGWEMKFLSKIIELRKIEAG 514
L + ++++ ++ L + DKR+ + +EIL +M +K WE F S+I +R E
Sbjct: 456 LQTLIVRKMRKLTKEGLQWT-DKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELS 514
Query: 515 WLKKFLYTGAMTSFVFWGAPTFVSVATFGACMLLGIPLESGKILSALATFRILQEPIYNL 574
W +K A SF+ P V++ +FG +LLG L + ++L+ F +L+ P+ L
Sbjct: 515 WFRKAQLLSAFNSFILNSIPVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNML 574
Query: 575 PDTISMIIQTKVSLDRIASFLCLDDLQSDVVEKHPRGSSETAIEIVDGNFAWDISSNNPT 634
P+ +S ++ VSL RI L + + + + P AI I +G F+WD ++ PT
Sbjct: 575 PNLLSQVVNANVSLQRIEELLLSE--ERILAQNPPLQPGAPAISIKNGYFSWDSKTSKPT 632
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGT-LKLCGTKAYVAQSPWIQS 693
L DINL++ G VA+ G G GK+SL+S +LGE+ + + + G+ AYV Q WI +
Sbjct: 633 LSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFN 692
Query: 694 GNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIA 753
+ +NILFG + E+Y R ++ +L+ DL++L D T IGERG+N+SGGQKQR+ +A
Sbjct: 693 ATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMA 752
Query: 754 RALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVM 813
RA+Y ++DIY+FDDP SA+DAH +F + L+ KT + VT+Q+ FLP D I+++
Sbjct: 753 RAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILV 812
Query: 814 KDGKITQAGKYNDILNSGTDFMVLV 838
+G I + G + ++ SG+ F L+
Sbjct: 813 SEGMIKEEGTFAELSKSGSLFKKLM 837
|
Length = 1495 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 334 bits (859), Expect = e-106
Identities = 120/204 (58%), Positives = 156/204 (76%), Gaps = 3/204 (1%)
Query: 617 IEIVDGNFAWD--ISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISG 674
I + D +F WD + TL+DINL+V G VA+ G VGSGKSSLLS +LGE+ K+SG
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 675 TLKLCGTKAYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTV 734
++ + G+ AYV+Q PWIQ+G I +NILFGKP D E+Y++V++AC+L+ DLEIL GD T
Sbjct: 61 SVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTE 120
Query: 735 IGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLR-SKT 793
IGE+GINLSGGQKQRI +ARA+Y DADIYL DDP SAVDAH G H+F+ +LGLL +KT
Sbjct: 121 IGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKT 180
Query: 794 VIYVTHQVEFLPAADLILVMKDGK 817
I VTHQ++ LP AD I+V+ +G+
Sbjct: 181 RILVTHQLQLLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 342 bits (879), Expect = 2e-97
Identities = 166/400 (41%), Positives = 245/400 (61%), Gaps = 4/400 (1%)
Query: 893 YYIPSARELSRLVGVCKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFH 952
YY ++RE+ RL V ++P+ F E ++G ++IR++ R N K +D R
Sbjct: 1069 YYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLA 1128
Query: 953 IAGAMEWLCFRLDMLSS----LTFAFSLVLLISIPKGVIEPAIAGLAVTYGLNLNMLQAW 1008
+ WL RL+ L LT F+++ + + GL ++Y LN+ L +
Sbjct: 1129 NTSSNRWLTIRLETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSG 1188
Query: 1009 VIWNLCNLENKIISVERILQYTCISSEPPLVIEESRPDCSWPTHGEVDILNLQVRYAPHL 1068
V+ EN + SVER+ Y + SE +IE +RP WP+ G + ++ +RY P L
Sbjct: 1189 VLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGL 1248
Query: 1069 PLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDL 1128
P VL GL+ K G+VGRTG+GKS+++ LFRIVE G I+ID +++ GL DL
Sbjct: 1249 PPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDL 1308
Query: 1129 RSRLSIIPQDPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTEN 1188
R LSIIPQ P +F GTVR N+DP E+ D ++WEAL++ + D + LD+ V+E
Sbjct: 1309 RRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEG 1368
Query: 1189 GENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAH 1248
GEN+S+GQRQL+ L R LL++SK+LVLDEATASVD TD+LIQ+T+R+ F CT++ IAH
Sbjct: 1369 GENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAH 1428
Query: 1249 RITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLV 1288
R+ ++ID D +L+LS G + EYDSP +LL +S+F ++V
Sbjct: 1429 RLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMV 1468
|
Length = 1495 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 297 bits (763), Expect = 4e-93
Identities = 125/225 (55%), Positives = 162/225 (72%), Gaps = 18/225 (8%)
Query: 1049 WPTHGEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEP 1108
WP HGE+++ NL VRYAP LP VL+ ++ G K GIVGRTG+GKSTLI LFR +E
Sbjct: 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEA 60
Query: 1109 TAGEIVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEEYKDEEIWEALDKC 1168
G+I IDGI+IS+I L DLRS L+IIPQDPT+F GT+R+NLDP +EY DEEI+ AL
Sbjct: 61 EEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGAL--- 117
Query: 1169 QLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDN 1228
RV+E G N S GQRQL+CL R LLK+ +VLVLDEATAS+D ATD
Sbjct: 118 ---------------RVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDA 162
Query: 1229 LIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSP 1273
LIQ+T+R+ F++ T++TIAHR+ ++ID D +L++ G ++EYD P
Sbjct: 163 LIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 254 bits (651), Expect = 5e-77
Identities = 121/236 (51%), Positives = 169/236 (71%)
Query: 1053 GEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGE 1112
GE+ I +L VRY +L VL+ + G K GI GRTGSGKS+L FR+V+ G+
Sbjct: 18 GEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGK 77
Query: 1113 IVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGD 1172
IVIDGI+IS + LH LRSRLSII QDP +F G++R NLDP + D+ +WEAL+ QL +
Sbjct: 78 IVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKN 137
Query: 1173 EVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQ 1232
V++ G LD+ VTE GEN+S+GQRQL CL R ++KS +L++DEATAS+D AT+N++Q+
Sbjct: 138 MVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQK 197
Query: 1233 TLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLV 1288
+ F+D TV+TIAHR+++++D+D+VL+LS GI+ E D+P LL + FA LV
Sbjct: 198 VVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLV 253
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 277 bits (710), Expect = 5e-76
Identities = 156/434 (35%), Positives = 233/434 (53%), Gaps = 43/434 (9%)
Query: 892 QYYIPSARELSRLVGVCKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKF 951
Q+Y + RE+ R+ V K+PV E + GS TI ++ + ++ +D
Sbjct: 1116 QFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLD-----VV 1170
Query: 952 HIAGAME-----WLCFRLDMLSSL-TFAFSLVLLISIPKGV--IEPAIAGLAVTYGLNLN 1003
+ +E WL R++ LS++ +L+ +I E + L++T +
Sbjct: 1171 YSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTT 1230
Query: 1004 MLQAWVIWNLCNLENKIISVERILQYT-CISSE--PPL---------------------V 1039
W++ + +E + SVER+L YT + E P L V
Sbjct: 1231 ATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVV 1290
Query: 1040 IEESRPDCSWPTH----GEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGK 1095
IE + P + P H G + +Q+RY LPLVLRG++ K GIVGRTGSGK
Sbjct: 1291 IEPASPTSAAP-HPVQAGSLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGK 1349
Query: 1096 STLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEE 1155
STL+ T R+VE GEI ++G I + GL +LR + S+IPQDP +F+GTVR N+DP E
Sbjct: 1350 STLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLE 1409
Query: 1156 YKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKK-SKVLV 1214
E+W AL+ L + V ++ +DSRV E G N+S+GQRQL+C+ R LLKK S ++
Sbjct: 1410 ASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFIL 1469
Query: 1215 LDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPT 1274
+DEATA++D A D IQ T+ FS TVITIAHR+ +V D ++++ HG + E SP
Sbjct: 1470 MDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPR 1529
Query: 1275 KLLENKSSSFAQLV 1288
+L+ N+ S F +V
Sbjct: 1530 ELVMNRQSIFHSMV 1543
|
Length = 1560 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 266 bits (681), Expect = 1e-72
Identities = 190/654 (29%), Positives = 320/654 (48%), Gaps = 57/654 (8%)
Query: 222 TPYSNASLFSVLTFSWMGSLISLGNKKTLDLEDV---PQLDSGDSVVGCFPIFRNKLEAN 278
+P A+ S L F W ++ G ++ L+L D+ P DS D++ R + E +
Sbjct: 4 SPVEKANFLSKLFFWWTRPILRKGYRQKLELSDIYQIPSFDSADNLSE-----RLEREWD 58
Query: 279 RVEGNKVTAFKLTKAL---FFSAWKEIVFTAILALLYTLANYVGPYLIDTFVQYLNGERE 335
R + KL AL FF W+ VF IL V P L+ + +
Sbjct: 59 RELASAKKNPKLLNALRRCFF--WR-FVFYGILLYFGEATKAVQPLLLGRIIASYDPFNA 115
Query: 336 FKNE-GYVLVSTFFVAKIVECLAQRHWMFRLQVAGIKMRSVLVSMVYNKGLTLSCQAKQS 394
+ E Y L + IV L +F L G++MR L S++Y K L LS +
Sbjct: 116 PEREIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLIYKKTLKLSSRVLDK 175
Query: 395 YTSGEIINFMTVDAERIGDFGWYMHDPWLVILQVSLALLILYKNLGLASIAALFATVLIM 454
++G++++ ++ + + + H W+ LQV L + ++++ L + L +L+
Sbjct: 176 ISTGQLVSLLSNNLNKFDEGLALAHFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLA 235
Query: 455 LTNFPLGRLQENFQDKLMGSKDKRMKVTSEILRNMRILKLQGWEMKFLSKIIE-LRKIEA 513
L LG+ ++DK G +R+ +TSEI+ N++ +K WE + + KII+ +R+ E
Sbjct: 236 LFQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWE-EAMEKIIKNIRQDEL 294
Query: 514 GWLKKFLYTGAMTSFVFWGAPTFVSV-ATFGACMLLGIPLESGKILSALATFRILQEPIY 572
+K Y S F+ + FV + ++ GI L +I + ++ +L+ +
Sbjct: 295 KLTRKIAYLRYFYSSAFFFSGFFVVFLSVVPYALIKGIILR--RIFTTISYCIVLRMTVT 352
Query: 573 -NLPDTISMIIQTKVSLDRIASFLCLDDLQSDVVEKHPRGSSETAIEIVDGNFAWD---- 627
P I + ++ +I FLC ++ + +E + + T +E+V+ +WD
Sbjct: 353 RQFPGAIQTWYDSLGAITKIQDFLCKEEYK--TLEYN---LTTTEVEMVNVTASWDEGIG 407
Query: 628 -----ISSNN----------------------PTLRDINLKVFHGMRVAVCGTVGSGKSS 660
I NN P L++I+ K+ G +AV G+ GSGKSS
Sbjct: 408 ELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSS 467
Query: 661 LLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSL 720
LL I+GE+ G +K G ++ Q+ WI G I+DNI+FG D +Y V++AC L
Sbjct: 468 LLMMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQL 527
Query: 721 KKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHL 780
++D+ + D+TV+GE GI LSGGQ+ RI +ARA+Y+DAD+YL D PF+ +D T +
Sbjct: 528 EEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEI 587
Query: 781 FKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSGTDF 834
F+ L L+ +KT I VT ++E L AD IL++ +G G ++++ DF
Sbjct: 588 FESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAKRPDF 641
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 250 bits (641), Expect = 1e-71
Identities = 127/403 (31%), Positives = 199/403 (49%), Gaps = 9/403 (2%)
Query: 893 YYIPSARELSRLVGVCKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFH 952
+R+LSR V + E++SG I++F E R + + R
Sbjct: 171 LLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLR 230
Query: 953 IAGAMEWLCFRLDMLSSLTFAFSLVL-LISIPKGVIEPAIAGLAVTYGLNLNMLQAWVIW 1011
+ L + +LSSL L L + G + + Y L L +
Sbjct: 231 ASRLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGE 290
Query: 1012 NLCNLENKIISVERILQYTCISSEPPLVIEESRPDCSWPTHGEVDILNLQVRYAPHLPLV 1071
+ L+ + ER+ + + E P V + PD T G ++ N+ Y P V
Sbjct: 291 VVSLLQRASAAAERLFE---LLDEEPEVEDP--PDPLKDTIGSIEFENVSFSYPGKKP-V 344
Query: 1072 LRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSR 1131
L+ ++ + G K IVG +GSGKSTLI+ L R+ +PT+GEI+IDGI+I I L LR R
Sbjct: 345 LKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKR 404
Query: 1132 LSIIPQDPTMFEGTVRNNLDP-LEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGE 1190
+ I+ QDP +F GT+R N+ + DEEI EAL + + N D+ V E G
Sbjct: 405 IGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGV 464
Query: 1191 NWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRI 1250
N S GQRQ + + R LL+ +L+LDEAT+++DT T+ LIQ L++ T + IAHR+
Sbjct: 465 NLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRL 524
Query: 1251 TSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLVAEYTQ 1293
+++ ++D +++L +G I E + +LL K +A+L
Sbjct: 525 STIKNADRIIVLDNGRIVERGTHEELL-AKGGLYARLYQAQGG 566
|
Length = 567 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 240 bits (613), Expect = 3e-64
Identities = 131/411 (31%), Positives = 224/411 (54%), Gaps = 18/411 (4%)
Query: 893 YYIPSARELSRLVGVCKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFH 952
Y++ ++++L +L ++P+ H ++ G TIR+F ++S F K ++ ++ F
Sbjct: 1044 YFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFL 1103
Query: 953 IAGAMEWLCFRLDMLSSLTFAFSLVLLISIPKGVIEPAIAGLAVTYGLNLNMLQAWVIWN 1012
+ W R+D++ F F V I+I G+ +T +N+ W + +
Sbjct: 1104 YLSTLRWFQMRIDII--FVFFFIAVTFIAIGTNQDGEGEVGIILTLAMNILSTLQWAVNS 1161
Query: 1013 LCNLENKIISVERILQYTCISSEPP--------------LVIEESRPDCSWPTHGEVDIL 1058
+++ + SV R+ ++ + E P LVIE WP+ G++D+
Sbjct: 1162 SIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQ 1221
Query: 1059 NLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGI 1118
L +Y VL+ L+ + GG + G++GRTGSGKSTL+ L R++ T GEI IDG+
Sbjct: 1222 GLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGV 1280
Query: 1119 NISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKE 1178
+ +S+ L R +IPQ +F GT R NLDP E++ DEEIW+ ++ L +
Sbjct: 1281 SWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFP 1340
Query: 1179 GKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF 1238
KLD + + G S G +QL+CL R +L K+K+L+LDE +A +D T +I++TL+Q F
Sbjct: 1341 DKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF 1400
Query: 1239 SDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLVA 1289
S+CTVI HR+ ++++ L++ +++YDS KLL N++S F Q ++
Sbjct: 1401 SNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLL-NETSLFKQAMS 1450
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 223 bits (570), Expect = 2e-62
Identities = 137/569 (24%), Positives = 249/569 (43%), Gaps = 36/569 (6%)
Query: 289 KLTKALFFSAW-KEIVFTAILALLYTLANYVGPYLIDTFVQYLNGEREFKNEGYVLVSTF 347
L + L K ++ +L LL L + + P LI + L + E +L+
Sbjct: 2 SLLRRLLKYLKYKLLLLAILLLLLSALLSLLLPLLIGRIIDALLADLGELLELLLLLLLL 61
Query: 348 FVAKIVECLAQRHWMFRLQVAGIKMRSVLVSMVYNKGLTLSCQAKQSYTSGEIINFMTVD 407
+ V Q + G K+ + L ++ K L L SG++I+ +T D
Sbjct: 62 ALLGGVLRALQSYLG---SRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTND 118
Query: 408 AERIGDFGWYMHDPWLV---ILQVSLALLILYKNLGLASIAALFATVLIMLTNFPLGRLQ 464
E + + LV IL + +L++L+ ++ L L+ L L R
Sbjct: 119 VEAVSNL--VSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKS 176
Query: 465 ENFQDKLMGSKDKRMKVTSEILRNMRILKLQGWE----MKFLSKIIELRKIEAGWLKKFL 520
++ + + E L +R++K G E +F ELR+ +
Sbjct: 177 RKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEA 236
Query: 521 YTGAMTSFVFWGAPTFVSVATFGACMLLGIPLESGKILSALATFRILQEPIYNLPDTISM 580
+ + V V G ++L L G + + + L PI L + +S+
Sbjct: 237 LLAPLMLLLSSLG--TVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSL 294
Query: 581 IIQTKVSLDRIASFLCLDDLQSDVVEKH-PRGSSETAIEIVDGNFAWDISSNNPTLRDIN 639
+ + + +R+ L D + +V + P + +IE + +F++ P L+DI+
Sbjct: 295 LQRASAAAERLFELL---DEEPEVEDPPDPLKDTIGSIEFENVSFSYP--GKKPVLKDIS 349
Query: 640 LKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK-------------AYVA 686
+ G +VA+ G GSGKS+L+ +L SG + + G V+
Sbjct: 350 FSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVS 409
Query: 687 QSPWIQSGNIEDNILFGKP-MDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGG 745
Q P + SG I +NI G+P E+ + L+ + + + L G T++GERG+NLSGG
Sbjct: 410 QDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGG 469
Query: 746 QKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLP 805
Q+QR+ IARAL ++ I + D+ SA+D T + + L LL+ +T + + H++ +
Sbjct: 470 QRQRLAIARALLRNPPILILDEATSALDTETEALIQD-ALKKLLKGRTTLIIAHRLSTIK 528
Query: 806 AADLILVMKDGKITQAGKYNDILNSGTDF 834
AD I+V+ +G+I + G + ++L G +
Sbjct: 529 NADRIIVLDNGRIVERGTHEELLAKGGLY 557
|
Length = 567 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 211 bits (538), Expect = 3e-62
Identities = 96/219 (43%), Positives = 139/219 (63%), Gaps = 21/219 (9%)
Query: 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 676
+++ +G F+W S TL +IN+++ G + G VG GKSSLL ILGE+ + G +
Sbjct: 1 VQVTNGYFSW--GSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKV 58
Query: 677 KLC-----------------GTKAYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACS 719
+ AY AQ PW+ + +E+NI FG P ++++Y V +ACS
Sbjct: 59 HWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACS 118
Query: 720 LKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSH 779
L+ D+++L FGDQT IGERGINLSGGQ+QRI +ARALYQ+ +I DDPFSA+D H H
Sbjct: 119 LQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDH 178
Query: 780 LFKEVLLGLLR--SKTVIYVTHQVEFLPAADLILVMKDG 816
L +E +L L+ +T++ VTH++++LP AD I+ MKDG
Sbjct: 179 LMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 209 bits (534), Expect = 2e-61
Identities = 85/229 (37%), Positives = 131/229 (57%), Gaps = 2/229 (0%)
Query: 1053 GEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGE 1112
GE++ N+ Y P VL+ + + G IVG TG+GK+TLI L R +P G+
Sbjct: 1 GEIEFENVNFSYDEKKP-VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQ 59
Query: 1113 IVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLD-PLEEYKDEEIWEALDKCQLG 1171
I+IDGI+I I LRS + ++ QD +F GT+ N+ DEE+ EA +
Sbjct: 60 ILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAH 119
Query: 1172 DEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQ 1231
D + D+ + ENG N S G+RQL+ + R +L+ K+L+LDEAT+++DT T+ LIQ
Sbjct: 120 DFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQ 179
Query: 1232 QTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENK 1280
+ L + T I IAHR++++ ++D +L+L G I E + +LL K
Sbjct: 180 EALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAKK 228
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 215 bits (551), Expect = 1e-58
Identities = 125/390 (32%), Positives = 189/390 (48%), Gaps = 26/390 (6%)
Query: 915 HFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFHIAGAMEWLCFRLDMLSSLTFAF 974
ETI G T+++ E RFR + F L +L L
Sbjct: 334 FLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQL---S 390
Query: 975 SLVLLISIPKGVIEPAIAGLAVTYG--LNLNMLQAWV---IWNLCNLENKI----ISVER 1025
S+++L V+E + T G + NML + I L L +++ER
Sbjct: 391 SVLILWFGAILVLEGEL-----TLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALER 445
Query: 1026 ILQYTCISSEPPLVIEESRPDCSWPTHGEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKT 1085
+ I PP + GE++ N+ RY P P VL L+ P G K
Sbjct: 446 LGD---ILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKV 502
Query: 1086 GIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDPTMFEGT 1145
IVGR+GSGKSTL++ L + +P G I++DG++++ I L LR ++ + QDP +F G+
Sbjct: 503 AIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGS 562
Query: 1146 VRNNL---DPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCL 1202
+R N+ +P E DEEI EA + + N D+ V E G N S GQRQ + L
Sbjct: 563 IRENIALGNP--EATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLAL 620
Query: 1203 GRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLL 1262
R LL K K+L+LDEAT+++D T+ +I Q L Q TVI IAHR++++ +D +++L
Sbjct: 621 ARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVL 680
Query: 1263 SHGIIEEYDSPTKLLENKSSSFAQLVAEYT 1292
G I E S +LL + +A+L +
Sbjct: 681 DQGKIVEQGSHEELL-AQGGLYARLYQQQE 709
|
Length = 709 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 191 bits (487), Expect = 7e-56
Identities = 70/207 (33%), Positives = 109/207 (52%), Gaps = 41/207 (19%)
Query: 1059 NLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGI 1118
N+ Y VL+ ++ T G K IVG +GSGKSTL++ L R+ +PT+GEI+IDG+
Sbjct: 5 NVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGV 64
Query: 1119 NISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKE 1178
++ + L LR ++ +PQDP +F GT+R N+
Sbjct: 65 DLRDLDLESLRKNIAYVPQDPFLFSGTIRENI---------------------------- 96
Query: 1179 GKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF 1238
S GQRQ + + R LL+ +L+LDEAT+++D T+ LI + LR
Sbjct: 97 -------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALA 143
Query: 1239 SDCTVITIAHRITSVIDSDMVLLLSHG 1265
TVI IAHR++++ D+D +++L G
Sbjct: 144 KGKTVIVIAHRLSTIRDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 187 bits (476), Expect = 1e-53
Identities = 83/229 (36%), Positives = 132/229 (57%), Gaps = 11/229 (4%)
Query: 1064 YAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSI 1123
Y P P VL+ ++ T P G K IVG +GSGKST+++ LFR + ++G I+IDG +I +
Sbjct: 10 YDPGRP-VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREV 68
Query: 1124 GLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEEY-----KDEEIWEALDKCQLGDEVRNKE 1178
L LR + ++PQD +F T+ N+ Y DEE+ EA Q+ D++
Sbjct: 69 TLDSLRRAIGVVPQDTVLFNDTIGYNI----RYGRPDATDEEVIEAAKAAQIHDKIMRFP 124
Query: 1179 GKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF 1238
D+ V E G S G++Q V + R +LK +L+LDEAT+++DT T+ IQ LR
Sbjct: 125 DGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVS 184
Query: 1239 SDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQL 1287
T I IAHR+++++++D +++L G I E + +LL K +A++
Sbjct: 185 KGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELL-AKGGLYAEM 232
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 185 bits (470), Expect = 2e-52
Identities = 89/237 (37%), Positives = 143/237 (60%), Gaps = 2/237 (0%)
Query: 1053 GEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGE 1112
G++ + +L +Y VL ++ + G + G++GRTGSGKSTL+ R++ T G+
Sbjct: 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGD 59
Query: 1113 IVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGD 1172
I IDG++ +S+ L R +IPQ +F GT R NLDP ++ DEEIW+ ++ L
Sbjct: 60 IQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKS 119
Query: 1173 EVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQ 1232
+ G+LD + + G S G +QL+CL R +L K+K+L+LDE +A +D T +I++
Sbjct: 120 VIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRK 179
Query: 1233 TLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLVA 1289
TL+Q F+DCTVI HRI ++++ L++ + +YDS KLL N+ S F Q ++
Sbjct: 180 TLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLL-NEKSHFKQAIS 235
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 193 bits (492), Expect = 4e-52
Identities = 110/406 (27%), Positives = 179/406 (44%), Gaps = 52/406 (12%)
Query: 914 QHFSETISGSTTIRSFDQE-----------SRFRDTNMKLVDGYSRPKFHIAGAMEWLC- 961
HF + + G T+R+F + FR M ++ R F + +E+
Sbjct: 180 GHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVL----RIAFLSSAVLEFFAY 235
Query: 962 -----------FRLDMLSSLTFAFSLVLLISIPKGVIEPAIAGLAVTYGLNLNMLQAWVI 1010
FRL LT L +LI P+ +P + L + A
Sbjct: 236 LSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPE-FFQP-LRDLGSFFHAAAAGEAA--- 290
Query: 1011 WNLCNLENKIISVERILQYTCISSEPPLVIEE-SRPDCSWPTHGEVDILNLQVRYAPHLP 1069
+K+ + + P + + + E+ + NL RY P
Sbjct: 291 ------ADKLFT---------LLESPVATPGSGEKAEVANEPPIEISLENLSFRY-PDGK 334
Query: 1070 LVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLR 1129
L L T G T +VG +G+GKSTL+ L + PT GEI ++GI++ + R
Sbjct: 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWR 394
Query: 1130 SRLSIIPQDPTMFEGTVRNNLDPLEEY-KDEEIWEALDKCQLGDEVRNKEGKLDSRVTEN 1188
++S + Q+P +F GT+R N+ DEEI ALD+ L + V +G LD+ + E
Sbjct: 395 KQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDG-LDTVIGEG 453
Query: 1189 GENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAH 1248
G S GQ Q + L R LL + +L+LDE TA +D T+ +I Q L++ TV+ I H
Sbjct: 454 GAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITH 513
Query: 1249 RITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLVAEYTQR 1294
R+ D+D +++L +G + E + +L E + +A L+ + R
Sbjct: 514 RLEDAADADRIVVLDNGRLVEQGTHEELSEKQ-GLYANLLKQQEGR 558
|
Length = 559 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 182 bits (463), Expect = 6e-52
Identities = 73/225 (32%), Positives = 120/225 (53%), Gaps = 1/225 (0%)
Query: 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIV 1114
V+ N+ RY P VLR ++ P G +VG +GSGKSTL+ + R + +G I+
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60
Query: 1115 IDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLD-PLEEYKDEEIWEALDKCQLGDE 1173
IDG ++ L LR ++ ++ QD +F TV N+ EE+ EA +
Sbjct: 61 IDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEF 120
Query: 1174 VRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQT 1233
+ D+ + E G S GQRQ + + R LLK +L+LDEAT+++DT ++ L+Q
Sbjct: 121 IMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAA 180
Query: 1234 LRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLE 1278
L + + T IAHR++++ ++D +++L G I E + +LL
Sbjct: 181 LERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLA 225
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 183 bits (465), Expect = 2e-51
Identities = 84/203 (41%), Positives = 127/203 (62%)
Query: 632 NPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWI 691
P L++INLK+ G +A+ G+ GSGK+SLL ILGE+ G +K G ++ +Q WI
Sbjct: 50 APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWI 109
Query: 692 QSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQ 751
G I++NI+FG D +Y V++AC L++D+ D TV+GE GI LSGGQ+ RI
Sbjct: 110 MPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARIS 169
Query: 752 IARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLIL 811
+ARA+Y+DAD+YL D PF +D T +F+ + L+ +KT I VT ++E L AD IL
Sbjct: 170 LARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKIL 229
Query: 812 VMKDGKITQAGKYNDILNSGTDF 834
++ +G G ++++ + DF
Sbjct: 230 ILHEGSSYFYGTFSELQSLRPDF 252
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 175 bits (445), Expect = 2e-49
Identities = 82/237 (34%), Positives = 145/237 (61%), Gaps = 5/237 (2%)
Query: 1055 VDILNLQVRYA--PHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGE 1112
++ N+ RY P +P +L+GL+ T P G +VG +G GKST++ L R +PT+GE
Sbjct: 1 IEFKNVSFRYPSRPDVP-ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGE 59
Query: 1113 IVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLD-PLEEYKDEEIWEALDKCQLG 1171
I++DG++I + L LRS++ ++ Q+P +F+GT+ N+ + DEE+ EA K +
Sbjct: 60 ILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIH 119
Query: 1172 DEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQ 1231
D + + D+ V E G S GQ+Q + + R LL+ K+L+LDEAT+++D ++ L+Q
Sbjct: 120 DFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQ 179
Query: 1232 QTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLV 1288
+ L + T I IAHR++++ ++D++ +L +G + E + +L+ K +A+LV
Sbjct: 180 EALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQK-GVYAKLV 235
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 189 bits (483), Expect = 1e-48
Identities = 78/196 (39%), Positives = 112/196 (57%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSG 694
LRD+++ V G V G GSGKS+LL +L + G + + AYV Q WI +
Sbjct: 676 LRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNA 735
Query: 695 NIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIAR 754
+ NILF D + + L+ DL L G +T IGE+G+NLSGGQK R+ +AR
Sbjct: 736 TVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLAR 795
Query: 755 ALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMK 814
A+Y + D+YL DDP SA+DAH G + +E LG L KT + THQV +P AD ++ +
Sbjct: 796 AVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALG 855
Query: 815 DGKITQAGKYNDILNS 830
DG++ +G D + +
Sbjct: 856 DGRVEFSGSSADFMRT 871
|
Length = 1560 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 179 bits (457), Expect = 1e-46
Identities = 152/581 (26%), Positives = 253/581 (43%), Gaps = 69/581 (11%)
Query: 288 FKLTKALFFSAWKEIVFTAILALLYTLAN-YVGPYLIDTFVQYLNGEREFKNEGYVLVST 346
FK + LF E++ ++L L LA +ID + ++ VL
Sbjct: 150 FKYRRLLF-----EVLLASLLLQLLALATPLFSQIVIDKVLP-----DASRSTLTVLAIG 199
Query: 347 FFVAKIVECLAQRHWMFRLQVAGIKMRSVLVSMVYNKGLTLSCQAKQSYTSGEIINFMTV 406
+A + E L + + + G ++ L + L L + + GEII+ +
Sbjct: 200 LLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVR- 258
Query: 407 DAERIGDFGWYMHDPWL------VILQ-----VSLALLILY-KNLGLASIAALFATVLIM 454
+ E+I +F L +I+ + LA++ LY L L +AA+ VLI
Sbjct: 259 ELEQIREF--------LTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLIT 310
Query: 455 LTNFPLGR--LQENFQDKLMGSKDKRMKVTSEILRNMRILKLQGWEMKFLSKIIEL--RK 510
L PL R ++ ++ ++ E ++ + +K E +F S+ ++
Sbjct: 311 LIFQPLLRRKTRKLIEESA-----EQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQ 365
Query: 511 IEAGWLKKFLYTGAMTSFVFWGAPTFVSVATFGACMLLGIPLESGKILSALATFRILQ-- 568
+ G+ + L T + V + FGA ++L E L L F +L
Sbjct: 366 VNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVL----EGELTLGQLVAFNMLAGY 421
Query: 569 --EPIYNLPDTISMIIQTKVSLDRIASFLCLDDLQSDVVEKHPRGSSETAIEIVDGNFAW 626
PI L + Q KV+L+R+ L Q + IE + +F +
Sbjct: 422 FISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRY 481
Query: 627 DISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK---- 682
+ P L D++L++ G +VA+ G GSGKS+LL +LG G + L G
Sbjct: 482 G-PDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDI 540
Query: 683 ---------AYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKK---DLEILSFG 730
YV Q P++ SG+I +NI G P + ++EA L +E L G
Sbjct: 541 DLASLRRQVGYVLQDPFLFSGSIRENIALGNPEAT--DEEIIEAAQLAGAHEFIENLPMG 598
Query: 731 DQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLR 790
T +GE G NLSGGQ+QR+ +ARAL I L D+ SA+D T + + LL +L+
Sbjct: 599 YDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPET-EAIILQNLLQILQ 657
Query: 791 SKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSG 831
+TVI + H++ + +AD I+V+ GKI + G + ++L G
Sbjct: 658 GRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQG 698
|
Length = 709 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 166 bits (423), Expect = 3e-43
Identities = 75/228 (32%), Positives = 126/228 (55%), Gaps = 2/228 (0%)
Query: 1053 GEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGE 1112
G+V+ N+ RY L ++ G +VGR+GSGKSTL+ + R EP +G+
Sbjct: 329 GDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQ 388
Query: 1113 IVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNL--DPLEEYKDEEIWEALDKCQL 1170
I++DG +++ L LR +++++ QD +F T+ NN+ E+ EI AL
Sbjct: 389 ILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYA 448
Query: 1171 GDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLI 1230
D V LD+ + ENG S GQRQ + + R LLK + +L+LDEAT+++D ++ L+
Sbjct: 449 QDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLV 508
Query: 1231 QQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLE 1278
Q L + T + IAHR++++ +D ++++ G I E + +LL
Sbjct: 509 QAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLA 556
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 165 bits (421), Expect = 7e-43
Identities = 93/376 (24%), Positives = 162/376 (43%), Gaps = 18/376 (4%)
Query: 914 QHFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFHIAGAMEWLCFRLDMLSSLTFA 973
F++ + G + F E +R + + + A L +++ L
Sbjct: 199 SQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAILLLIAGLLVI 258
Query: 974 FSLVLL-ISIPKG---VIEPAIAGLAVTYGLNLNMLQAWVIWN---LCNLENKIISVERI 1026
L+ + + G A+A L + L+A+ +L I S R+
Sbjct: 259 GLLLWMAAQVGAGALAQPGAALALLVI-----FAALEAFEPLAPGAFQHLGQVIASARRL 313
Query: 1027 LQYTCISSEPPLVIEESRPDCSWPTHGEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTG 1086
I + P V + E+ N+ Y L+ T G K
Sbjct: 314 ---NDILDQKPEVTFPDEQTATTGQALELR--NVSFTYPGQQTKALKNFNLTLAQGEKVA 368
Query: 1087 IVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTV 1146
I+GR+GSGKSTL+Q L +P G I ++G+ I+S+ LR +S++ Q +F GT+
Sbjct: 369 ILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTL 428
Query: 1147 RNNLD-PLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRV 1205
R+NL + DEE+W AL + L + + L++ + E G S G+R+ + L R
Sbjct: 429 RDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARA 488
Query: 1206 LLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHG 1265
LL + + +LDE T +D T+ + L +H T++ + HR+ + D +++L +G
Sbjct: 489 LLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNG 548
Query: 1266 IIEEYDSPTKLLENKS 1281
I E + +LL N
Sbjct: 549 KIIEEGTHAELLANNG 564
|
Length = 573 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 166 bits (421), Expect = 9e-43
Identities = 117/385 (30%), Positives = 191/385 (49%), Gaps = 46/385 (11%)
Query: 916 FSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFHIAGAMEWLCFRLD--MLSSLTFA 973
F+E I+G + I+ F Q++RF + ++ + SR H M+ L RLD +L L
Sbjct: 207 FNEVINGMSVIQQFRQQARFGE---RMGEA-SRS--HYMARMQTL--RLDGFLLRPLLSL 258
Query: 974 FS------LVLLISI-PKGVIEPAIAGLAVTYGLNLN-----------MLQAWVIWNLCN 1015
FS L++L G IE + ++Y LN MLQ V+
Sbjct: 259 FSALILCGLLMLFGFSASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVV----- 313
Query: 1016 LENKIISVERILQYTCISSEPPLVIEESRPDCSWPTHGEVDILNLQVRYAPHLPLVLRGL 1075
+ ER+ + + + RP S G +DI N+ Y VL+ +
Sbjct: 314 ------AGERVFEL--MDGPRQQYGNDDRPLQS----GRIDIDNVSFAYRDDNL-VLQNI 360
Query: 1076 TCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSII 1135
+ P +VG TGSGKSTL L T GEI +DG +SS+ LR ++++
Sbjct: 361 NLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMV 420
Query: 1136 PQDPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMG 1195
QDP + T N+ + +E++W+AL+ QL + R+ L + + E G N S+G
Sbjct: 421 QQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVG 480
Query: 1196 QRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVID 1255
Q+QL+ L RVL++ ++L+LDEATA++D+ T+ IQQ L T++ IAHR++++++
Sbjct: 481 QKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVE 540
Query: 1256 SDMVLLLSHGIIEEYDSPTKLLENK 1280
+D +L+L G E + +LL +
Sbjct: 541 ADTILVLHRGQAVEQGTHQQLLAAQ 565
|
Length = 592 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 163 bits (415), Expect = 3e-42
Identities = 81/276 (29%), Positives = 138/276 (50%), Gaps = 26/276 (9%)
Query: 587 SLDRIASFLCLDDLQSDVVEKHPRGSSETA----IEIVDGNFAWDISSNNPTLRDINLKV 642
+ D++ + L +S V +E A IEI N ++ P L D+NL +
Sbjct: 290 AADKLFTLL-----ESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGKPALSDLNLTI 344
Query: 643 FHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK-------------AYVAQSP 689
G A+ G G+GKS+LL+ +LG + G +++ G ++V+Q+P
Sbjct: 345 KAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNP 404
Query: 690 WIQSGNIEDNILFGKPMD-REKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQ 748
++ +G I +NIL +P E+ L+ L + + G TVIGE G LSGGQ Q
Sbjct: 405 YLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVP-KPDGLDTVIGEGGAGLSGGQAQ 463
Query: 749 RIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAAD 808
R+ +ARAL A + L D+P + +DA T + + L L + KTV+ +TH++E AD
Sbjct: 464 RLALARALLSPASLLLLDEPTAHLDAET-EQIILQALQELAKQKTVLVITHRLEDAADAD 522
Query: 809 LILVMKDGKITQAGKYNDILNSGTDFMVLVGAHQQA 844
I+V+ +G++ + G + ++ + L+ Q+
Sbjct: 523 RIVVLDNGRLVEQGTHEELSEKQGLYANLL-KQQEG 557
|
Length = 559 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 153 bits (389), Expect = 4e-42
Identities = 78/219 (35%), Positives = 122/219 (55%), Gaps = 7/219 (3%)
Query: 1053 GEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGE 1112
G ++ N+ Y L ++ T G K I+GR GSGKSTL++ L + +PT+G
Sbjct: 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGS 60
Query: 1113 IVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNL---DPLEEYKDEEIWEALDKCQ 1169
+++DG +I + DLR + +PQD T+F GT+R+N+ PL + DE I A +
Sbjct: 61 VLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLAD--DERILRAAELAG 118
Query: 1170 LGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNL 1229
+ D V LD ++ E G S GQRQ V L R LL +L+LDE T+++D ++
Sbjct: 119 VTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEER 178
Query: 1230 IQQTLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGII 1267
+++ LRQ D T+I I HR S++D D ++++ G I
Sbjct: 179 LKERLRQLLGDKTLIIITHR-PSLLDLVDRIIVMDSGRI 216
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 149 bits (378), Expect = 3e-41
Identities = 67/214 (31%), Positives = 97/214 (45%), Gaps = 56/214 (26%)
Query: 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 676
IE + +F++ P L+D++L + G +VA+ G GSGKS+LL +L SG +
Sbjct: 1 IEFKNVSFSYP-GRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI 59
Query: 677 KLCGTK-------------AYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKD 723
+ G AYV Q P++ SG I +NIL
Sbjct: 60 LIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENIL---------------------- 97
Query: 724 LEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKE 783
SGGQ+QRI IARAL +D I + D+ SA+D T L E
Sbjct: 98 -------------------SGGQRQRIAIARALLRDPPILILDEATSALDPET-EALILE 137
Query: 784 VLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGK 817
L L + KTVI + H++ + AD I+V+ DG+
Sbjct: 138 ALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 155 bits (395), Expect = 7e-40
Identities = 96/403 (23%), Positives = 166/403 (41%), Gaps = 70/403 (17%)
Query: 887 DKVDEQYYIPSARELSRLVGVCKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLVDGY 946
+Q+ LSRL G HF + + G T++ F + + + Y
Sbjct: 170 AAARKQW-----AALSRLSG--------HFLDRLRGLPTLKLFGRAKAQAAAIRRSSEEY 216
Query: 947 SRPKFHIAGAMEWLCFRLDMLSSLTFAFSLVLLISIPKGVIEPAIAGLAVTYGLNL---- 1002
M L R+ LSS L L ++ ++A +AV G L
Sbjct: 217 RE------RTMRVL--RIAFLSS----AVLELFATL-------SVALVAVYIGFRLLAGD 257
Query: 1003 -NMLQAWVIWNLC------------------NLENKIISVERILQYTCISSEPPL-VIEE 1042
++ + L + ++ +L ++ PL
Sbjct: 258 LDLATGLFVLLLAPEFYLPLRQLGAQYHARADGVAAAEALFAVLD----AAPRPLAGKAP 313
Query: 1043 SRPDCSWPTHGEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTL 1102
+ ++ + V Y P LR ++ T P G + +VG +G+GKSTL+ L
Sbjct: 314 VTAAPAPS----LEFSGVSVAY-PGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLL 368
Query: 1103 FRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNL---DPLEEYKDE 1159
V+PT G I ++G+ ++ R +++ +PQ P +F GT+ N+ P + D
Sbjct: 369 LGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARP--DASDA 426
Query: 1160 EIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEAT 1219
EI EAL++ L + V LD+ + E G S GQ Q + L R L+ + +L+LDE T
Sbjct: 427 EIREALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPT 486
Query: 1220 ASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLL 1262
A +D T+ + + LR TV+ + HR+ +D +++L
Sbjct: 487 AHLDAETEAEVLEALRALAQGRTVLLVTHRLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 158 bits (401), Expect = 1e-39
Identities = 76/220 (34%), Positives = 126/220 (57%), Gaps = 7/220 (3%)
Query: 1052 HGEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAG 1111
GE++ N+ Y L ++ T G K I+GR GSGKSTL++ L + +PT G
Sbjct: 461 QGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEG 520
Query: 1112 EIVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNL---DPLEEYKDEEIWEALDKC 1168
+++DG++I I DLR + +PQDP +F GT+R+N+ P + DEEI A +
Sbjct: 521 SVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYAD--DEEILRAAELA 578
Query: 1169 QLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDN 1228
+ + VR LD ++ E G + S GQRQ V L R LL+ +L+LDE T+++D ++
Sbjct: 579 GVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEE 638
Query: 1229 LIQQTLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGII 1267
+ L++ + T++ + HR TS++D D ++++ +G I
Sbjct: 639 RFKDRLKRWLAGKTLVLVTHR-TSLLDLVDRIIVMDNGRI 677
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 154 bits (391), Expect = 1e-39
Identities = 95/365 (26%), Positives = 174/365 (47%), Gaps = 17/365 (4%)
Query: 925 TIRSFDQESRFRDTNMKLVDGYSRPKFHIAGAMEWLCFRLDMLSSLTFAFSLVLLISI-P 983
T++ F E ++ Y + + ++ L F + F+ L +++++
Sbjct: 134 TVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLVLNF----GQTAIFSTGLRVMMTMSA 189
Query: 984 KGVIE-----PAIAGLAVTYGLNLNMLQAWVIWNLCNLENKIISVERILQYTCISSEPPL 1038
GV E + L++ ++ ++ + + +E++ +
Sbjct: 190 LGVEEGQLTVGDLV-NVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFD---LLDVEAE 245
Query: 1039 VIEESR-PDCSWPTHGEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKST 1097
V + P G V +N+ Y P P +L G++ T P G IVG +G+GKST
Sbjct: 246 VSDAPDAPPLWPVRLGAVAFINVSFAYDPRRP-ILNGISFTIPLGKTVAIVGESGAGKST 304
Query: 1098 LIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVR-NNLDPLEEY 1156
+++ LFR + +G I IDG +I + LR + I+PQD +F T+ N +
Sbjct: 305 ILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDA 364
Query: 1157 KDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLD 1216
EE+ A + Q+ D +++ D+ V E G S G++Q V + R +LK +L+LD
Sbjct: 365 TAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILD 424
Query: 1217 EATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKL 1276
EAT+++DT T+ IQ LR+ + T + IAHR++++ID+D +++L +G I E + +L
Sbjct: 425 EATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEEL 484
Query: 1277 LENKS 1281
L
Sbjct: 485 LAAGG 489
|
Length = 497 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 153 bits (390), Expect = 2e-38
Identities = 82/260 (31%), Positives = 143/260 (55%), Gaps = 12/260 (4%)
Query: 1037 PLVIEESRPDC----SWPTHGEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTG 1092
PL+ EE P S G V++ N+ Y+P P ++ + T G + +VG +G
Sbjct: 456 PLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSG 515
Query: 1093 SGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNL-- 1150
SGKST+ + + + +P +GEI+ DGI I L + ++++ QD +FEGTVR+NL
Sbjct: 516 SGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTL 575
Query: 1151 -DPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKK 1209
DP D ++ A + D + ++ G D+ + E G N S GQRQ + + R L++
Sbjct: 576 WDP--TIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRN 633
Query: 1210 SKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEE 1269
+L+LDEAT+++D T+ +I LR+ CT I +AHR++++ D D +++L G + +
Sbjct: 634 PSILILDEATSALDPETEKIIDDNLRRR--GCTCIIVAHRLSTIRDCDEIIVLERGKVVQ 691
Query: 1270 YDSPTKLLENKSSSFAQLVA 1289
+ +L ++A+L+
Sbjct: 692 RGTHEELWA-VGGAYARLIR 710
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 3e-38
Identities = 125/517 (24%), Positives = 211/517 (40%), Gaps = 66/517 (12%)
Query: 349 VAKIVECLAQRHWMFRLQVAGIKMRSVLVSMVYNKGLTLSCQAKQSYTSGEIINFMTVDA 408
A+ VE L FR+ ++ +++R ++ K LS Y SG+++N + D
Sbjct: 73 AARYVERLVSHDATFRV-LSALRVR------LFEKLEPLSPALLLRYRSGDLLNRLVADV 125
Query: 409 ERIGDFGWYMHDPWLVILQVSLALLILYKNLGLASI-------AALFATVLIMLTNFPLG 461
+ + + + P +V L + + I L SI L +LI+ T F
Sbjct: 126 DALDNLYLRVIAPAVVALVLIAVVTIG---LSFFSIPLALLLGLILLLLLLIIPTLF--Y 180
Query: 462 RLQENFQDKLMGSKDKRMKVTSEILRNMRILKLQGWEMKFLSKIIELRKIEAGWLK---- 517
R F L + ++ ++ L + G E + + L EA WLK
Sbjct: 181 RAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTA---LEATEASWLKAQRK 237
Query: 518 ------------KFLYTGAMTSFVFWGAPTFVSVATFGACMLLGIPLESGKILSALATFR 565
+ + + W A + GA G L I +AL F
Sbjct: 238 QARFTGLSDAILLLIAGLLVIGLLLWMA----AQVGAGALAQPGAALALLVIFAALEAFE 293
Query: 566 ILQEPIYNLPDTISMIIQTKVSLDRIASFLCLDDLQSDVVEKHPRGSSETAIEIVDGNFA 625
L P + Q S R+ L + E+ + A+E+ + +F
Sbjct: 294 PL------APGAFQHLGQVIASARRLNDILDQKPEVTFPDEQTAT--TGQALELRNVSFT 345
Query: 626 WDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK--- 682
+ L++ NL + G +VA+ G GSGKS+LL + G G++ L G +
Sbjct: 346 YPGQQT-KALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIAS 404
Query: 683 ----------AYVAQSPWIQSGNIEDNILFGKP-MDREKYDRVLEACSLKKDLEILSFGD 731
+ + Q + SG + DN+ P E+ L+ L+K LE G
Sbjct: 405 LDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGL 464
Query: 732 QTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRS 791
T +GE G LSGG+++R+ +ARAL DA ++L D+P +D T + +L
Sbjct: 465 NTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVL-ALLFEHAEG 523
Query: 792 KTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDIL 828
KT++ VTH++ L D I+V+ +GKI + G + ++L
Sbjct: 524 KTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELL 560
|
Length = 573 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 4e-38
Identities = 68/232 (29%), Positives = 126/232 (54%), Gaps = 2/232 (0%)
Query: 1059 NLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGI 1118
+++ RY P P++L ++ G GIVGR+GSGKSTL + + R P G +++DG
Sbjct: 5 HVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGH 64
Query: 1119 NISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEEYKD-EEIWEALDKCQLGDEVRNK 1177
+++ LR ++ ++ Q+ +F ++R+N+ + E + EA D +
Sbjct: 65 DLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISEL 124
Query: 1178 EGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQH 1237
D+ V E G S GQRQ + + R L+ ++L+ DEAT+++D +++ I + +
Sbjct: 125 PEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDI 184
Query: 1238 FSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLVA 1289
+ TVI IAHR+++V ++D ++++ G I E S +LL ++ +A L
Sbjct: 185 CAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLA-ENGLYAYLYQ 235
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 148 bits (376), Expect = 2e-37
Identities = 75/231 (32%), Positives = 120/231 (51%), Gaps = 3/231 (1%)
Query: 1020 IISVERILQYTCISSEPPLVIEESRPDCSWPTHGEVDILNLQVRYAPHLPLVLRGLTCTF 1079
+ ERI++ + +++ +L Y P P VL G++
Sbjct: 301 RAAAERIVEVLDAAGPVAEG-SAPAAGAVGLGKPTLELRDLSAGY-PGAPPVLDGVSLDL 358
Query: 1080 PGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDP 1139
P G + I+G +GSGKSTL+ TL +++P GE+ +DG+ +SS+ ++R R+S+ QD
Sbjct: 359 PPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDA 418
Query: 1140 TMFEGTVRNNLD-PLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQ 1198
+F+ TVR NL + DEE+W AL++ L D +R LD+ + E G S G+RQ
Sbjct: 419 HLFDTTVRENLRLARPDATDEELWAALERVGLADWLRALPDGLDTVLGEGGARLSGGERQ 478
Query: 1199 LVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHR 1249
+ L R LL + +L+LDE T +D T + + + L S TV+ I H
Sbjct: 479 RLALARALLADAPILLLDEPTEHLDAETADELLEDLLAALSGRTVVLITHH 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 139 bits (353), Expect = 3e-37
Identities = 71/228 (31%), Positives = 118/228 (51%), Gaps = 21/228 (9%)
Query: 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 676
IE + NF++D P L+DIN + G VA+ G G+GK++L++ ++ G +
Sbjct: 3 IEFENVNFSYD--EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQI 60
Query: 677 KLCGTK-------------AYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKD 723
+ G V Q ++ SG I +NI G+P + + V+EA
Sbjct: 61 LIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATD--EEVIEAAKEAGA 118
Query: 724 LEILSF---GDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHL 780
+ + G TV+GE G NLS G++Q + IARA+ +D I + D+ S +D T L
Sbjct: 119 HDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEK-L 177
Query: 781 FKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDIL 828
+E L L++ +T I + H++ + AD ILV+ DGKI + G ++++L
Sbjct: 178 IQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELL 225
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 139 bits (353), Expect = 4e-37
Identities = 75/229 (32%), Positives = 122/229 (53%), Gaps = 16/229 (6%)
Query: 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 676
+E + F + P LRDI+L + G VA+ G GSGKS+L++ I SG +
Sbjct: 1 VEFKNVTFRYP-GDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI 59
Query: 677 KLCGTK-------------AYVAQSPWIQSGNIEDNILFGKP-MDREKYDRVLEACSLKK 722
+ G V+Q ++ + + +NI +G+P RE+ + A + +
Sbjct: 60 LIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHE 119
Query: 723 DLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFK 782
+ L G TVIGERG+ LSGGQ+QRI IARAL +D I + D+ SA+D + L +
Sbjct: 120 FIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTES-ERLVQ 178
Query: 783 EVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSG 831
L L++++T + H++ + AD I+V++DGKI + G + ++L G
Sbjct: 179 AALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQG 227
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 139 bits (352), Expect = 4e-37
Identities = 75/223 (33%), Positives = 122/223 (54%), Gaps = 6/223 (2%)
Query: 1050 PTH--GEVDILNLQVRYAPHLP--LVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRI 1105
P H G V N+ Y P P LVL+ ++ T G T +VG +GSGKST++ L
Sbjct: 5 PDHLKGIVKFQNVTFAY-PTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENF 63
Query: 1106 VEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLD-PLEEYKDEEIWEA 1164
+P G++++DG IS L S++S++ Q+P +F ++++N+ L+ E + EA
Sbjct: 64 YQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEA 123
Query: 1165 LDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDT 1224
K + D+ V E G S GQ+Q V + R L++ +VL+LDEAT+++D
Sbjct: 124 AQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDA 183
Query: 1225 ATDNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGII 1267
++ +QQ L TV+ IAHR+++V +D +L+L G I
Sbjct: 184 ESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 146 bits (371), Expect = 7e-37
Identities = 69/196 (35%), Positives = 104/196 (53%), Gaps = 15/196 (7%)
Query: 632 NPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK--------- 682
P LR ++ V G RVA+ G G+GKS+LL+ +LG V G++ + G
Sbjct: 335 RPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSW 394
Query: 683 ----AYVAQSPWIQSGNIEDNILFGKP-MDREKYDRVLEACSLKKDLEILSFGDQTVIGE 737
A+V Q P++ +G I +NI +P + LE L + + L G T IGE
Sbjct: 395 RDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIREALERAGLDEFVAALPQGLDTPIGE 454
Query: 738 RGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYV 797
G LSGGQ QR+ +ARA +DA + L D+P + +DA T + + E L L + +TV+ V
Sbjct: 455 GGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEV-LEALRALAQGRTVLLV 513
Query: 798 THQVEFLPAADLILVM 813
TH++ AD I+V+
Sbjct: 514 THRLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 147 bits (373), Expect = 1e-36
Identities = 85/273 (31%), Positives = 137/273 (50%), Gaps = 22/273 (8%)
Query: 589 DRIASFLCLDDLQSDVVEKHPRGSSETAIEIVDGNFAWDISSNN--PTLRDINLKVFHGM 646
+ + +FL EK +S + I + I S + +N + G
Sbjct: 322 ESLVTFLETPLAHPQQGEKEL--ASNDPVTIEAEDLE--ILSPDGKTLAGPLNFTLPAGQ 377
Query: 647 RVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK-------------AYVAQSPWIQS 693
R+A+ G G+GK+SLL+ +LG +P G+LK+ G + ++V Q+P +
Sbjct: 378 RIALVGPSGAGKTSLLNALLGFLP-YQGSLKINGIELRELDPESWRKHLSWVGQNPQLPH 436
Query: 694 GNIEDNILFGKP-MDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQI 752
G + DN+L G P E+ + LE + + L +L G T IG++ LS GQ QR+ +
Sbjct: 437 GTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLAL 496
Query: 753 ARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILV 812
ARAL Q + L D+P +++DAH+ L + L R +T + VTHQ+E L D I V
Sbjct: 497 ARALLQPCQLLLLDEPTASLDAHS-EQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWV 555
Query: 813 MKDGKITQAGKYNDILNSGTDFMVLVGAHQQAL 845
M+DG+I Q G Y ++ +G F L+ Q+ +
Sbjct: 556 MQDGQIVQQGDYAELSQAGGLFATLLAHRQEEI 588
|
Length = 588 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 146 bits (370), Expect = 3e-36
Identities = 79/257 (30%), Positives = 132/257 (51%), Gaps = 21/257 (8%)
Query: 1035 EPPLVIEESRPDCSWPTHGEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSG 1094
+PP I+ R G V+ ++ Y V ++ G IVG TG+G
Sbjct: 321 DPPGAIDLGR------VKGAVEFDDVSFSYDNSRQGV-EDVSFEAKPGQTVAIVGPTGAG 373
Query: 1095 KSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLD-PL 1153
KSTLI L R+ +P +G I+IDG +I ++ LR ++++ QD +F ++ +N+
Sbjct: 374 KSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGR 433
Query: 1154 EEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVL 1213
+ DEE+ A ++ Q D + K D+ V E G S G+RQ + + R LLK +L
Sbjct: 434 PDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPIL 493
Query: 1214 VLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHG-IIEEYDS 1272
+LDEAT+++D T+ ++ L + T IAHR+++V ++D +L+ +G ++E
Sbjct: 494 ILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVE---- 549
Query: 1273 PTKLLENKSSSFAQLVA 1289
S SF +LVA
Sbjct: 550 --------SGSFDELVA 558
|
Length = 588 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 146 bits (371), Expect = 5e-36
Identities = 78/220 (35%), Positives = 129/220 (58%), Gaps = 4/220 (1%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS 1130
+L ++ T KT IVG +GSGKSTL + L + +GEI+++G ++ I H LR
Sbjct: 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQ 548
Query: 1131 RLSIIPQDPTMFEGTVRNNL--DPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTEN 1188
++ +PQ+P +F G++ NL E +EIW A + ++ D++ N + ++E
Sbjct: 549 FINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEE 608
Query: 1189 GENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAH 1248
G + S GQ+Q + L R LL SKVL+LDE+T+++DT T+ I L + D T+I +AH
Sbjct: 609 GSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNL-LNLQDKTIIFVAH 667
Query: 1249 RITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLV 1288
R++ SD +++L HG I E S +LL +++ +A L+
Sbjct: 668 RLSVAKQSDKIIVLDHGKIIEQGSHDELL-DRNGFYASLI 706
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 145 bits (367), Expect = 5e-36
Identities = 73/225 (32%), Positives = 123/225 (54%), Gaps = 8/225 (3%)
Query: 1050 PTHGEVDILNLQVRYAPHLP--LVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVE 1107
P GE++ + Y P P L GL T G +VG +G+GKSTL Q L R +
Sbjct: 333 PLRGEIEFEQVNFAY-PARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYD 391
Query: 1108 PTAGEIVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNL---DPLEEYKDEEIWEA 1164
P +G I++DG+++ + +LR+R++++PQDP +F +V N+ P + DEE+ A
Sbjct: 392 PQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRP--DATDEEVEAA 449
Query: 1165 LDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDT 1224
+ + D+ + E G S GQRQ + + R +LK + +L+LDEAT+++D
Sbjct: 450 ARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDA 509
Query: 1225 ATDNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEE 1269
++ L+QQ L T + IAHR+ +V+ +D ++++ G I
Sbjct: 510 ESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVA 554
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 148 bits (376), Expect = 6e-36
Identities = 84/321 (26%), Positives = 151/321 (47%), Gaps = 9/321 (2%)
Query: 290 LTKALFFSAWKEIVFTAILALLYTLANYVGPYLIDTFVQYLNGEREFKNEGYVLVSTFFV 349
L + LF + + + LL + P L+ FV++L+ + G LV T F+
Sbjct: 234 LLRTLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNATWGRGLGLVLTLFL 293
Query: 350 AKIVE-CLAQR--HWMFRLQVAGIKMRSVLVSMVYNKGLTLSCQAKQ--SYTSGEIINFM 404
++++ R + R G++ RS L ++++ K T+S ++ +G IIN M
Sbjct: 294 TQLIQSVCLHRFYYISIR---CGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMM 350
Query: 405 TVDAERIGDFGWYMHDPWLVILQVSLALLILYKNLGLASIAALFATVLIMLTNFPLGRLQ 464
+ D ERI F Y W + + L++L+L + +G ++ A+ ++ + N + + Q
Sbjct: 351 STDVERINSFMQYCMYLWSSPMVLLLSILLLSRLVGWCALMAVAVLLVTLPLNGAIMKHQ 410
Query: 465 ENFQDKLMGSKDKRMKVTSEILRNMRILKLQGWEMKFLSKIIELRKIEAGWLKKFLYTGA 524
+ K+ + D R+K T+E +RI K WE F++ I + R E +L+
Sbjct: 411 MAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQLARV 470
Query: 525 MTSFVFWGAPTFVSVATFGACMLLGIPLESGKILSALATFRILQEPIYNLPDTISMIIQT 584
TSFV PT + F LLG L + +A +L+ P + +P + ++Q
Sbjct: 471 ATSFVNNATPTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQF 530
Query: 585 KVSLDRIASFL-CLDDLQSDV 604
VS+ RI++FL C + S V
Sbjct: 531 LVSIKRISTFLECDNATCSTV 551
|
Length = 1560 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 6e-35
Identities = 78/217 (35%), Positives = 109/217 (50%), Gaps = 16/217 (7%)
Query: 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGT 675
IE + +F++ + P L +++L + G +VA+ G VGSGKS+LL + G SG+
Sbjct: 2 RIEFRNVSFSYP-NQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGS 60
Query: 676 LKLCGTKA-------------YVAQSPWIQSGNIEDNILFGKPM-DREKYDRVLEACSLK 721
+ L GT YV Q + G + DNI G P+ D E+ R E +
Sbjct: 61 VLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVT 120
Query: 722 KDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLF 781
+ G IGERG LSGGQ+Q + +ARAL D I L D+P SA+D
Sbjct: 121 DFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMD-MNSEERL 179
Query: 782 KEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKI 818
KE L LL KT+I +TH+ L D I+VM G+I
Sbjct: 180 KERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRI 216
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 7e-35
Identities = 78/237 (32%), Positives = 131/237 (55%), Gaps = 3/237 (1%)
Query: 1053 GEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGE 1112
G+++ N+ Y LR + P G +VGR+GSGKST+ L R + GE
Sbjct: 340 GDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGE 399
Query: 1113 IVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNL--DPLEEYKDEEIWEALDKCQL 1170
I++DG ++ L LR++++++ Q+ +F T+ NN+ E+Y E+I EA
Sbjct: 400 ILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYA 459
Query: 1171 GDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLI 1230
D + + LD+ + ENG S GQRQ + + R LL+ S +L+LDEAT+++DT ++ I
Sbjct: 460 MDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAI 519
Query: 1231 QQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQL 1287
Q L + + T + IAHR++++ +D +L++ G I E + +LL +AQL
Sbjct: 520 QAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQN-GVYAQL 575
|
Length = 582 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 9e-35
Identities = 77/232 (33%), Positives = 125/232 (53%), Gaps = 27/232 (11%)
Query: 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCIL-------GEV 669
IE + +F + + P L+ ++L + G VA+ G+ G GKS+++S + GE+
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 670 PKISG----TLKLCGTK---AYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKK 722
+ G L L + V+Q P + G I +NI +GKP D + V EA K
Sbjct: 61 L-LDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKP-DATD-EEVEEAA---K 114
Query: 723 DLEILSF------GDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHT 776
I F G T++GERG LSGGQKQRI IARAL ++ I L D+ SA+DA +
Sbjct: 115 KANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAES 174
Query: 777 GSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDIL 828
L +E L ++ +T I + H++ + ADLI V+++G++ + G +++++
Sbjct: 175 -EKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELM 225
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 2e-34
Identities = 79/264 (29%), Positives = 132/264 (50%), Gaps = 10/264 (3%)
Query: 1020 IISVERILQYTCISSEPPLVI--EESRPDCSWPTHGEVDILNLQVRYAPHLPLVLRGLTC 1077
I S RI + I+ + P V S + + N+ Y VL+GL+
Sbjct: 308 IASARRINE---ITEQKPEVTFPTTSTAA---ADQVSLTLNNVSFTYPDQPQPVLKGLSL 361
Query: 1078 TFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQ 1137
G K ++GRTG GKSTL+Q L R +P GEI+++G I+ LR +S++ Q
Sbjct: 362 QIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQ 421
Query: 1138 DPTMFEGTVRNNLD-PLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQ 1196
+F T+R+NL DE + E L + L + + +G L++ + E G S G+
Sbjct: 422 RVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKG-LNAWLGEGGRQLSGGE 480
Query: 1197 RQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDS 1256
++ + + R LL + +L+LDE T +D T+ I + L +H + TV+ I HR+T +
Sbjct: 481 QRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQF 540
Query: 1257 DMVLLLSHGIIEEYDSPTKLLENK 1280
D + ++ +G I E + +LL +
Sbjct: 541 DRICVMDNGQIIEQGTHQELLAQQ 564
|
Length = 574 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 130 bits (328), Expect = 9e-34
Identities = 73/231 (31%), Positives = 122/231 (52%), Gaps = 21/231 (9%)
Query: 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 676
IE + FA+D P L+D++ + G +VA+ G GSGKS++L + SG++
Sbjct: 1 IEFENVTFAYD--PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI 58
Query: 677 KLCGTK-------------AYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKK- 722
+ G V Q + + I NI +G+P + + V+EA +
Sbjct: 59 LIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATD--EEVIEAAKAAQI 116
Query: 723 DLEILSFGD--QTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHL 780
+I+ F D T++GERG+ LSGG+KQR+ IARA+ ++ I L D+ SA+D HT +
Sbjct: 117 HDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREI 176
Query: 781 FKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSG 831
L + + +T I + H++ + AD I+V+KDG+I + G + ++L G
Sbjct: 177 QAA-LRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKG 226
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 139 bits (352), Expect = 9e-34
Identities = 112/396 (28%), Positives = 188/396 (47%), Gaps = 42/396 (10%)
Query: 918 ETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKF------HIAGAMEWLCFRLDMLSSLT 971
E+++G TI++ E +F++ + + Y F +IAG L +L L
Sbjct: 322 ESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLW 381
Query: 972 FAFSLVLLISIPKGVIEP----AIAGLA--VTYGLNLNMLQAWVIWNLCNLENKIISVER 1025
F LV+ G + P A LA VT L + Q W + + I++ER
Sbjct: 382 FGAHLVI-----GGALSPGQLVAFNMLAGRVT-QPVLRLAQLWQ-----DFQQTGIALER 430
Query: 1026 ILQYTCISSEPPLVIEESRPD--CSWPT-HGEVDILNLQVRYAPHLPLVLRGLTCTFPGG 1082
+ I + P E R + P G + N++ RYAP P VL L G
Sbjct: 431 LGD---ILNSP----TEPRSAGLAALPELRGAITFENIRFRYAPDSPEVLSNLNLDIKPG 483
Query: 1083 MKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDPTMF 1142
GIVG +GSGKSTL + L R+ P G++++DG++++ LR ++ ++ Q+ +F
Sbjct: 484 EFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLF 543
Query: 1143 EGTVRNNL---DPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQL 1199
++R+N+ +P E + A D + ++ V E G N S GQRQ
Sbjct: 544 SRSIRDNIALCNP--GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQR 601
Query: 1200 VCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSDMV 1259
+ + R L+ ++L+ DEAT+++D ++ LI + +R+ TVI IAHR+++V D +
Sbjct: 602 IAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRI 661
Query: 1260 LLLSHGIIEEYDSPTKLLENKSSSFAQLVAEYTQRS 1295
++L G I E +LL +A+L + Q+S
Sbjct: 662 IVLEKGQIAESGRHEELLA-LQGLYARL---WQQQS 693
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 5e-33
Identities = 76/224 (33%), Positives = 131/224 (58%), Gaps = 5/224 (2%)
Query: 1066 PHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGL 1125
P +P VL+GLT T G +VG +GSGKST+ L + +PT G++++DG+ +
Sbjct: 492 PDVP-VLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDH 550
Query: 1126 HDLRSRLSIIPQDPTMFEGTVRNNLD-PLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSR 1184
H L +++++ Q+P +F G+VR N+ L + DEEI A D + D+
Sbjct: 551 HYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTE 610
Query: 1185 VTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVI 1244
V E G S GQ+Q + + R L++K +VL+LDEAT+++D + L+Q++ + + TV+
Sbjct: 611 VGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQES--RSRASRTVL 668
Query: 1245 TIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLV 1288
IAHR+++V +D +L+L G + E + +L+E++ + LV
Sbjct: 669 LIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQ-GCYKHLV 711
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 135 bits (340), Expect = 1e-32
Identities = 73/218 (33%), Positives = 123/218 (56%), Gaps = 2/218 (0%)
Query: 1072 LRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSR 1131
+ ++ G IVG TG+GK+TLI L R+ +PT G+I+IDGI+I+++ LR
Sbjct: 351 VFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKS 410
Query: 1132 LSIIPQDPTMFEGTVRNNLD-PLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGE 1190
++ + QD +F ++R N+ E DEE++EA D + + D+ V E G
Sbjct: 411 IATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGN 470
Query: 1191 NWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRI 1250
S G+RQ + + R +LK + +LVLDEAT+++D T+ ++ + + T IAHR+
Sbjct: 471 RLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRL 530
Query: 1251 TSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLV 1288
++V ++D+VL L G + E S +L+ K F +L+
Sbjct: 531 STVRNADLVLFLDQGRLIEKGSFQELI-QKDGRFYKLL 567
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 134 bits (338), Expect = 2e-32
Identities = 120/495 (24%), Positives = 217/495 (43%), Gaps = 43/495 (8%)
Query: 362 MFRLQVAGIKMRSVLVSMVYNKGLTLSCQAKQSYTSGEIINFMTVDAERIGDFGWYMHDP 421
V+ +R + V M + K L L +G +++ +T D+E++ D
Sbjct: 76 YLLSWVSNKVVRDIRVRM-FEKLLGLPVSFFDRQPTGTLLSRITFDSEQVAS---AATDA 131
Query: 422 WLVILQVSL---ALLI--LYKNLGLASIAALFATVLIMLTNFPLGRLQENFQDKLMGSKD 476
++V+++ +L L I LY + L I + VL +L RL+ ++ S
Sbjct: 132 FIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLR-RISKEIQNSMG 190
Query: 477 KRMKVTSEILRNMRILKLQGWEMKFLSKIIELRKIEAGWLKKFLYTGAMTSFVFWGAPTF 536
+ V E L+ R++KL G + + + K G+++S P
Sbjct: 191 QVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISS------PIT 244
Query: 537 VSVATFGACMLLGIPL--------ESGKILSALATFRILQEPIYNLPDTISMIIQTKVSL 588
+A+ ++L I L +G + + L P+ +L + + + + +
Sbjct: 245 QLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAA 304
Query: 589 DRIASFLCLDDLQSDVVEKHPRGSSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRV 648
+ + + L + R + V + + P L I+L + G V
Sbjct: 305 ESLFTLLDSPPEKDTGTRAIERARGDVEFRNVTFRYP---GRDRPALDSISLVIEPGETV 361
Query: 649 AVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK-------------AYVAQSPWIQSGN 695
A+ G GSGKS+L++ I SG + L G A V+Q + +
Sbjct: 362 ALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDT 421
Query: 696 IEDNILFGKP--MDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIA 753
I +NI +G+ DR + +R L A + ++ L G T IGE G+ LSGGQ+QR+ IA
Sbjct: 422 IANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIA 481
Query: 754 RALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVM 813
RAL +DA I + D+ SA+D + + + L L++ +T + + H++ + AD I+VM
Sbjct: 482 RALLKDAPILILDEATSALDNESERLV-QAALERLMQGRTTLVIAHRLSTIEKADRIVVM 540
Query: 814 KDGKITQAGKYNDIL 828
DG+I + G +N++L
Sbjct: 541 DDGRIVERGTHNELL 555
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 134 bits (340), Expect = 4e-32
Identities = 86/256 (33%), Positives = 125/256 (48%), Gaps = 28/256 (10%)
Query: 583 QTKVSLDRIASFLCLDDLQSDVVEKHP------RGSSETAIEIVDGNFAWDISSNNPTLR 636
Q K +L LD+L VE+ R + IE + +FA+ P L
Sbjct: 430 QAKTALQS------LDELMQLPVERPEGTRFLHRPRLQGEIEFRNVSFAYP-GQETPALD 482
Query: 637 DINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKA------------- 683
+++L + G +VA+ G +GSGKS+LL +LG G++ L G
Sbjct: 483 NVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIG 542
Query: 684 YVAQSPWIQSGNIEDNILFGKP-MDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINL 742
YV Q P + G + DNI G P D E+ R E + + + G IGERG +L
Sbjct: 543 YVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSL 602
Query: 743 SGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVE 802
SGGQ+Q + +ARAL +D I L D+P SA+D + FK+ L L KT++ VTH+
Sbjct: 603 SGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEER-FKDRLKRWLAGKTLVLVTHRTS 661
Query: 803 FLPAADLILVMKDGKI 818
L D I+VM +G+I
Sbjct: 662 LLDLVDRIIVMDNGRI 677
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 132 bits (335), Expect = 6e-32
Identities = 82/263 (31%), Positives = 130/263 (49%), Gaps = 26/263 (9%)
Query: 589 DRIASFLCLDDLQSDV-VEKHPR-----GSSETAIEIVDGNFAWDISSNNPTLRDINLKV 642
+R+ L + D+ HP+ E E V NFA+ + P L +NL V
Sbjct: 309 ERLIELL---QAEPDIKAPAHPKTLPVPLRGEIEFEQV--NFAYPARPDQPALDGLNLTV 363
Query: 643 FHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK-------------AYVAQSP 689
G VA+ G G+GKS+L +L SG + L G A V Q P
Sbjct: 364 RPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDP 423
Query: 690 WIQSGNIEDNILFGKP-MDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQ 748
+ + ++ +NI +G+P E+ + A + + L G T +GERG+ LSGGQ+Q
Sbjct: 424 VLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQ 483
Query: 749 RIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAAD 808
RI IARA+ +DA I L D+ SA+DA + L ++ L L++ +T + + H++ + AD
Sbjct: 484 RIAIARAILKDAPILLLDEATSALDAES-EQLVQQALETLMKGRTTLIIAHRLATVLKAD 542
Query: 809 LILVMKDGKITQAGKYNDILNSG 831
I+VM G+I G + +++ G
Sbjct: 543 RIVVMDQGRIVAQGTHAELIAKG 565
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 132 bits (335), Expect = 1e-31
Identities = 87/313 (27%), Positives = 155/313 (49%), Gaps = 25/313 (7%)
Query: 537 VSVATFGACMLLGIPLESGKILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIASFLC 596
V + GA +++ L G++++ A P+ N+ + + +V+ +R+
Sbjct: 394 VVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYL 453
Query: 597 LDDLQSDVVEKHPRGSSETA---IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGT 653
+D S+ + K R I I D ++++ SN L DI+L + + + G
Sbjct: 454 VD---SEFINKKKRTELNNLNGDIVINDVSYSYGYGSN--ILSDISLTIKMNSKTTIVGM 508
Query: 654 VGSGKSSLLSCILGEVPKISGTLKLCGTK-------------AYVAQSPWIQSGNIEDNI 700
GSGKS+L ++G SG + L G Y+ Q P+I SG+I +N+
Sbjct: 509 SGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENL 568
Query: 701 LFG-KP-MDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQ 758
L G K + +++ E +K D+E + G QT + E G ++SGGQKQRI +ARAL
Sbjct: 569 LLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLT 628
Query: 759 DADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKI 818
D+ + + D+ S +D T + +L L+ KT+I+V H++ +D I+V+ GKI
Sbjct: 629 DSKVLILDESTSNLDTITEKKIVNNLL--NLQDKTIIFVAHRLSVAKQSDKIIVLDHGKI 686
Query: 819 TQAGKYNDILNSG 831
+ G ++++L+
Sbjct: 687 IEQGSHDELLDRN 699
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 1e-31
Identities = 63/235 (26%), Positives = 116/235 (49%), Gaps = 24/235 (10%)
Query: 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIV 1114
+++ NL +Y L G++ G G++G G+GK+TL++ L +++PT+GEI+
Sbjct: 5 IEVRNLTKKYGGDKT-ALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEIL 63
Query: 1115 IDGINISSIGLHDLRSRLSIIPQDPTMFEG-TVRNNLD-------PLEEYKDEEIWEALD 1166
+ G ++ +R R+ +PQ+P+++ TVR NL+ +E +E I E L+
Sbjct: 64 VLGYDVVK-EPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLE 122
Query: 1167 KCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTAT 1226
L D+ K L S G +Q + + LL ++L+LDE T+ +D +
Sbjct: 123 LFGLEDKANKKVRTL-----------SGGMKQRLSIALALLHDPELLILDEPTSGLDPES 171
Query: 1227 DNLIQQTLRQHFSD--CTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLE 1278
I + LR+ + T++ H + + D V++L+ G I +P +L E
Sbjct: 172 RREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKE 226
|
Length = 293 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 2e-31
Identities = 62/222 (27%), Positives = 112/222 (50%), Gaps = 13/222 (5%)
Query: 1075 LTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSI 1134
L T P G + +VG +G+GK++L+ L + P G + I+GI + + R LS
Sbjct: 369 LNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSW 427
Query: 1135 IPQDPTMFEGTVRNNL---DPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGEN 1191
+ Q+P + GT+R+N+ +P + DE++ +AL+ + + + LD+ + +
Sbjct: 428 VGQNPQLPHGTLRDNVLLGNP--DASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAG 485
Query: 1192 WSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRIT 1251
S+GQ Q + L R LL+ ++L+LDE TAS+D ++ L+ Q L T + + H++
Sbjct: 486 LSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLE 545
Query: 1252 SVIDSDMVLLLSHGIIEE---YDSPTKLLENKSSSFAQLVAE 1290
+ D + ++ G I + Y L FA L+A
Sbjct: 546 DLAQWDQIWVMQDGQIVQQGDYAE----LSQAGGLFATLLAH 583
|
Length = 588 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 132 bits (333), Expect = 2e-31
Identities = 158/596 (26%), Positives = 255/596 (42%), Gaps = 74/596 (12%)
Query: 284 KVTAFKLTKALFFSAWKEIVFTAILALLYTLANYVGPY----LIDTFVQYLNGER-EFKN 338
+ L + A ++++ + LL TL + P LI T + + +R
Sbjct: 120 ALGLRDLLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIP--DADRSLLVQ 177
Query: 339 EGYVLVSTFFVAKIVECLAQRHWMFRLQVAGIKMRSVLVSMVYNKGLTLSCQAKQSYTSG 398
L++ A + LAQ + RL+ M + L + V+++ L L + Y++G
Sbjct: 178 IALALLAAAVGAAAFQ-LAQSLAVLRLETR---MDASLQAAVWDRLLRLPVSFFRQYSTG 233
Query: 399 EIIN-FMTVDA-ERIGDFGWYMHDPWLVILQ------VSLALLILYKNLGLASIAALFAT 450
++ + M + RI + L L ++L L+ Y + LA +A A
Sbjct: 234 DLASRAMGISQIRRI------LSGSTLTTLLSGIFALLNLGLM-FYYSWKLALVAVALAL 286
Query: 451 VLIMLTNFPLGRLQENFQDKLMGSKDKRMKVTSEILRNMRILKLQGWEMKFLSKIIEL-- 508
V I +T LG LQ + +L+ K +T +++ + L++ G E + ++ +L
Sbjct: 287 VAIAVTLV-LGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFS 345
Query: 509 --RKIEAGWLKKFLYTGAMTSF-VFWGAPTFVSVATFGACMLL--GIPLESGKILSALAT 563
RK+E L +T F P S A F A + L G L G L+
Sbjct: 346 RQRKLE---LSAQRIENLLTVFNAVL--PVLTSAALFAAAISLLGGAGLSLGSFLAFNTA 400
Query: 564 FRILQEPIYNLPDTISMIIQTKVSLDRIASFLCLDDLQSDVVEKHPRGSSETAIEIVDGN 623
F + L +T+ I+ +R L + L K G AIE+
Sbjct: 401 FGSFSGAVTQLSNTLISILAVIPLWERAKPIL--EALPEVDEAKTDPGKLSGAIEVDRVT 458
Query: 624 FAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTL------ 676
F + L D++L++ G VA+ G GSGKS+LL +LG E P+ SG++
Sbjct: 459 FRYRPDGP-LILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE-SGSVFYDGQD 516
Query: 677 ----------KLCGTKAYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACS---LKKD 723
+ G V Q+ + SG+I +NI G P+ D EA L +D
Sbjct: 517 LAGLDVQAVRRQLGV---VLQNGRLMSGSIFENIAGGAPL---TLDEAWEAARMAGLAED 570
Query: 724 LEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKE 783
+ + G TVI E G LSGGQ+QR+ IARAL + I LFD+ SA+D T +
Sbjct: 571 IRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAI---- 626
Query: 784 VLLGLLRSK-TVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSGTDFMVLV 838
V L R K T I + H++ + AD I V+ G++ Q G Y++++ F L
Sbjct: 627 VSESLERLKVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAREGLFAQLA 682
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 130 bits (330), Expect = 2e-31
Identities = 75/214 (35%), Positives = 111/214 (51%), Gaps = 15/214 (7%)
Query: 630 SNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISG----------TLKL- 678
+++P L ++N + G + +CG GSGKS+LLS I G L+L
Sbjct: 326 TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLD 385
Query: 679 --CGTKAYVAQSPWIQSGNIEDNILFGKP-MDREKYDRVLEACSLKKDLEILSFGDQTVI 735
A V+Q+P++ S + +NI G+P +++ + V S+ D+ L G T +
Sbjct: 386 SWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEV 445
Query: 736 GERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVI 795
GERG+ LSGGQKQRI IARAL +A+I + DD SAVD T + L +TVI
Sbjct: 446 GERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHN-LRQWGEGRTVI 504
Query: 796 YVTHQVEFLPAADLILVMKDGKITQAGKYNDILN 829
H++ L A ILVM+ G I Q G ++ +
Sbjct: 505 ISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQ 538
|
Length = 569 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 4e-31
Identities = 78/263 (29%), Positives = 117/263 (44%), Gaps = 29/263 (11%)
Query: 557 ILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIASFLCLDDLQSDVVEKHPR----GS 612
+L LA F E LP + + + + +RI L ++ P G
Sbjct: 277 VLLPLAAF----EAFAALPAAAQQLTRVRAAAERIVEVLDAAGPVAEGS--APAAGAVGL 330
Query: 613 SETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKI 672
+ +E+ D + + P L ++L + G RVA+ G GSGKS+LL+ + G + +
Sbjct: 331 GKPTLELRDLSAGYP--GAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPL 388
Query: 673 SGTLKLCGTKA-------------YVAQSPWIQSGNIEDNILFGKP--MDREKYDRVLEA 717
G + L G AQ + + +N+ +P D E + LE
Sbjct: 389 QGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDTTVRENLRLARPDATDEELWA-ALER 447
Query: 718 CSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTG 777
L L L G TV+GE G LSGG++QR+ +ARAL DA I L D+P +DA T
Sbjct: 448 VGLADWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETA 507
Query: 778 SHLFKEVLLGLLRSKTVIYVTHQ 800
L E LL L +TV+ +TH
Sbjct: 508 DELL-EDLLAALSGRTVVLITHH 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 128 bits (325), Expect = 2e-30
Identities = 66/238 (27%), Positives = 129/238 (54%), Gaps = 3/238 (1%)
Query: 1052 HGEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAG 1111
G +++ + RY P PL+L ++ G IVG +GSGKSTL++ L P +G
Sbjct: 449 SGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESG 508
Query: 1112 EIVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLG 1171
+ DG +++ + + +R +L ++ Q+ + G++ N+ +E WEA L
Sbjct: 509 SVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLA 568
Query: 1172 DEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQ 1231
+++R + + ++E G S GQRQ + + R L++K ++L+ DEAT+++D T ++
Sbjct: 569 EDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVS 628
Query: 1232 QTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLVA 1289
++L + T I IAHR++++ ++D + +L G + + + +L+ + FAQL
Sbjct: 629 ESLER--LKVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMA-REGLFAQLAR 683
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 119 bits (302), Expect = 2e-30
Identities = 62/194 (31%), Positives = 97/194 (50%), Gaps = 37/194 (19%)
Query: 630 SNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------- 682
+P L D++ +V G +A+ G G+GKS+LL ILG + SG++++ G
Sbjct: 10 GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKR 69
Query: 683 -AYVAQSPWIQSG---NIEDNIL--------FGKPMDREKYDRVLEACSLKKDLEILSFG 730
YV Q I ++ D +L + + + +V EA L++ + +
Sbjct: 70 IGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEA--LER-VGLSELA 126
Query: 731 DQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLR 790
D+ IGE LSGGQ+QR+ +ARAL QD D+ L D+PF+ VD T +E + LLR
Sbjct: 127 DRQ-IGE----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKT-----QEDIYELLR 176
Query: 791 S-----KTVIYVTH 799
T++ VTH
Sbjct: 177 ELRREGMTILVVTH 190
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 2e-30
Identities = 56/208 (26%), Positives = 92/208 (44%), Gaps = 42/208 (20%)
Query: 1059 NLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGI 1118
N+ RY P VLR ++ + G I+G +GSGKSTL + + ++ PT+G + +DG
Sbjct: 5 NVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGA 64
Query: 1119 NISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKE 1178
+IS ++L + +PQD +F G++ N+
Sbjct: 65 DISQWDPNELGDHVGYLPQDDELFSGSIAENI---------------------------- 96
Query: 1179 GKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQ-H 1237
S GQRQ + L R L ++LVLDE + +D + + Q +
Sbjct: 97 -------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALK 143
Query: 1238 FSDCTVITIAHRITSVIDSDMVLLLSHG 1265
+ T I IAHR ++ +D +L+L G
Sbjct: 144 AAGATRIVIAHRPETLASADRILVLEDG 171
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 2e-30
Identities = 70/214 (32%), Positives = 97/214 (45%), Gaps = 34/214 (15%)
Query: 631 NNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK-------- 682
+ L D++L V G +A+ G G GK++LL I G SG + + G
Sbjct: 12 SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPER 71
Query: 683 ---AYVAQS----PWIQSGNIEDNILFG----KPMDREKYDRVLEACSLKKDLEILSFGD 731
V Q P + + +NI FG E RV E L + + +
Sbjct: 72 RNIGMVFQDYALFPHL---TVAENIAFGLKLRGVPKAEIRARVRELLEL---VGLEGLLN 125
Query: 732 QTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRS 791
+ LSGGQ+QR+ +ARAL ++ + L D+P SA+DA L +E L L R
Sbjct: 126 RYPHE-----LSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREE-LKELQRE 179
Query: 792 --KTVIYVTH-QVEFLPAADLILVMKDGKITQAG 822
T IYVTH Q E L AD I VM +G+I Q G
Sbjct: 180 LGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 3e-30
Identities = 66/243 (27%), Positives = 122/243 (50%), Gaps = 37/243 (15%)
Query: 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVE-----PT 1109
+++ +L V Y L+ ++ P G T ++G +G GKSTL++ L R+ + P
Sbjct: 1 IELRDLNVYYGDKH--ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD 58
Query: 1110 AGEIVIDGINISSIGLHD--LRSRLSIIPQDPTMFEGTVRNNLD--------PLEEYKDE 1159
GE+++DG +I + + LR R+ ++ Q P F G++ +N+ L+E DE
Sbjct: 59 EGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDE 118
Query: 1160 EIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEAT 1219
+ EAL K L DEV+++ L S GQ+Q +CL R L + +VL+LDE T
Sbjct: 119 RVEEALRKAALWDEVKDRLHALG---------LSGGQQQRLCLARALANEPEVLLLDEPT 169
Query: 1220 ASVDTATDNLIQQTLRQHFSDCTVITIAH------RITSVIDSDMVLLLSHGIIEEYDSP 1273
+++D + I++ + + + T++ + H R+ +D L +G + E+
Sbjct: 170 SALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARV-----ADRTAFLLNGRLVEFGPT 224
Query: 1274 TKL 1276
++
Sbjct: 225 EQI 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 8e-30
Identities = 114/439 (25%), Positives = 178/439 (40%), Gaps = 55/439 (12%)
Query: 421 PWLVILQVSLALLILYKNLGLASIAALFATVLIMLTNFPLGRLQENFQDKLMGSKDKRMK 480
PW+ I + LL + +G I AL V+++ R + + + +
Sbjct: 127 PWMPIYLLVCFLLHPW--IG---ILALGGAVVLVGLALLNNRATKKPLKEATEASIRANN 181
Query: 481 VTSEILRNMRILKLQG--------WE---MKFLSKIIEL--RKIEAGWLKKFLYTGAMTS 527
+ LRN +++ G W K+LS R L K+ +
Sbjct: 182 LADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSL 241
Query: 528 FVFWGAPTFVSVATFGACMLLGIPLESGKILSALATFRILQEPIYNLPDTISMIIQTKVS 587
+ GA + M+ G L G+ L+ PI + +
Sbjct: 242 VLGLGAYLAIDGEITPGMMIAGSIL-VGRALA----------PIDGAIGGWKQFSGARQA 290
Query: 588 LDRIASFLCLDDLQSDVVE-KHPRGSSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGM 646
R+ L + + P G ++E V PTLR I+ + G
Sbjct: 291 YKRLNELLANYPSRDPAMPLPEPEG--HLSVENVTIVPP---GGKKPTLRGISFSLQAGE 345
Query: 647 RVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-------------TKAYVAQSPWIQS 693
+A+ G GSGKS+L I+G P SG+++L G Y+ Q +
Sbjct: 346 ALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFP 405
Query: 694 GNIEDNIL-FGKPMDREKYDRVLEACSLKKDLE-ILSF--GDQTVIGERGINLSGGQKQR 749
G + +NI FG+ D EK ++EA L E IL G TVIG G LSGGQ+QR
Sbjct: 406 GTVAENIARFGENADPEK---IIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQR 462
Query: 750 IQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADL 809
I +ARALY D + + D+P S +D L + R TV+ +TH+ L D
Sbjct: 463 IALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDK 522
Query: 810 ILVMKDGKITQAGKYNDIL 828
ILV++DG+I + G+ +++L
Sbjct: 523 ILVLQDGRIARFGERDEVL 541
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 3e-29
Identities = 69/221 (31%), Positives = 106/221 (47%), Gaps = 31/221 (14%)
Query: 618 EIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLK 677
E+ + +F++ P L DI+L + G V + G GSGKS+LL + G + SG +
Sbjct: 1 ELKNLSFSYP-DGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVL 59
Query: 678 LCGTK-------------AYVAQSPWIQ--SGNIEDNILFG---KPMDREK-YDRVLEAC 718
+ G V Q+P Q +E+ + FG + E+ +RV EA
Sbjct: 60 VDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEAL 119
Query: 719 SLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGS 778
+ + + D++ LSGGQKQR+ IA L D DI L D+P + +D
Sbjct: 120 ---ELVGLEGLRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRR 171
Query: 779 HLFKEVLLGLLRS-KTVIYVTHQVEFLPA-ADLILVMKDGK 817
L E+L L KT+I VTH ++ L AD ++V++DGK
Sbjct: 172 ELL-ELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 4e-29
Identities = 68/214 (31%), Positives = 108/214 (50%), Gaps = 21/214 (9%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQ-- 692
L +I+L++ G V + G GSGKS+L I +G + + G +A W++
Sbjct: 18 LDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQ 77
Query: 693 -----------SGNIEDNILFGKP-MDREKYDRVLEACSLKKDLEI---LSFGDQTVIGE 737
+ +I DNI P M E RV+EA L + L G T++GE
Sbjct: 78 VGVVLQENVLFNRSIRDNIALADPGMSME---RVIEAAKLAGAHDFISELPEGYDTIVGE 134
Query: 738 RGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYV 797
+G LSGGQ+QRI IARAL + I +FD+ SA+D + H + + +TVI +
Sbjct: 135 QGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYES-EHAIMRNMHDICAGRTVIII 193
Query: 798 THQVEFLPAADLILVMKDGKITQAGKYNDILNSG 831
H++ + AD I+VM+ G+I + G ++++L
Sbjct: 194 AHRLSTVKNADRIIVMEKGRIVEQGSHDELLAEN 227
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 2e-28
Identities = 80/240 (33%), Positives = 115/240 (47%), Gaps = 29/240 (12%)
Query: 633 PTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK---------- 682
P L+ I+ + G + + G GSGKS+L ++G P SG+++L G
Sbjct: 350 PILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLG 409
Query: 683 ---AYVAQSPWIQSGNIEDNIL-FGKPMDREKYDRVLEACSLKK--DLEILSF--GDQTV 734
Y+ Q + G I +NI FG+ D EK V+EA L +L IL G T
Sbjct: 410 RHIGYLPQDVELFDGTIAENIARFGEEADPEK---VIEAARLAGVHEL-ILRLPQGYDTR 465
Query: 735 IGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LRSKT 793
IGE G LSGGQ+QRI +ARALY D + + D+P S +D+ G +L R T
Sbjct: 466 IGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDS-EGEAALAAAILAAKARGGT 524
Query: 794 VIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSGTDFMVLVGAHQQALSALDSIEG 853
V+ + H+ L + D ILV++DG+I G ++L VL +QA G
Sbjct: 525 VVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK-----VLRPPPRQAKPGTVVAPG 579
|
Length = 580 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 4e-28
Identities = 75/240 (31%), Positives = 121/240 (50%), Gaps = 13/240 (5%)
Query: 1034 SEPPLVIEESRPDCSWPTHGEVDILNLQVR---YAPHLPLVLRGLTCTFPGGMKTGIVGR 1090
+E P+V D S P L++ +R Y L + T G GI G
Sbjct: 295 AEAPVVK-----DGSEPVPEGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGP 349
Query: 1091 TGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNL 1150
TGSGKSTL+ + R + + G+I I ++ + L RSRL+++ Q P +F TV NN+
Sbjct: 350 TGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNI 409
Query: 1151 ---DPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLL 1207
P + +EI + D++ D+ V E G S GQ+Q + + R LL
Sbjct: 410 ALGRP--DATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALL 467
Query: 1208 KKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGII 1267
+++L+LD+A ++VD T++ I LRQ TVI AHR++++ ++ +L++ HG I
Sbjct: 468 LNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHI 527
|
Length = 569 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 7e-28
Identities = 65/209 (31%), Positives = 109/209 (52%), Gaps = 24/209 (11%)
Query: 632 NPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG---TK------ 682
P L++I+ + G +V + G GSGKSSLL + V SG++ + G +K
Sbjct: 17 PPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDL 76
Query: 683 ----AYVAQSPWIQSGNIEDNI-LFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGE 737
+ + Q P + SG I N+ FG+ D E + + LE LK+ +E L G TV+ E
Sbjct: 77 RSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELW-QALERVGLKEFVESLPGGLDTVVEE 135
Query: 738 RGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSK----T 793
G NLS GQ+Q + +ARAL + + I + D+ ++VD T + + K +R T
Sbjct: 136 GGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQK-----TIREAFKDCT 190
Query: 794 VIYVTHQVEFLPAADLILVMKDGKITQAG 822
V+ + H+++ + +D ILV+ G++ +
Sbjct: 191 VLTIAHRLDTIIDSDRILVLDKGRVVEFD 219
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 7e-28
Identities = 58/202 (28%), Positives = 88/202 (43%), Gaps = 47/202 (23%)
Query: 618 EIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLK 677
EI + +F + L +++L + G VA+ G GSGKS+LL I G + SG +
Sbjct: 1 EIENLSFRYG---GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL 57
Query: 678 LCGTKAYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGE 737
+ G + L++ + + Q
Sbjct: 58 IDGKD--------------------------------IAKLPLEELRRRIGYVPQ----- 80
Query: 738 RGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRS-KTVIY 796
LSGGQ+QR+ +ARAL + D+ L D+P S +D + E+L L +TVI
Sbjct: 81 ----LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASR-ERLLELLRELAEEGRTVII 135
Query: 797 VTHQVEFL-PAADLILVMKDGK 817
VTH E AAD ++V+KDGK
Sbjct: 136 VTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 8e-28
Identities = 62/211 (29%), Positives = 100/211 (47%), Gaps = 39/211 (18%)
Query: 1059 NLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGI 1118
N+ Y VL+ L+ G K ++GR+GSGKSTL+Q L ++P GEI +DG+
Sbjct: 5 NVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGV 64
Query: 1119 NISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKE 1178
+S + L S +S++ Q P +F+ T+RNNL
Sbjct: 65 PVSDLE-KALSSLISVLNQRPYLFDTTLRNNL---------------------------- 95
Query: 1179 GKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF 1238
G +S G+RQ + L R+LL+ + +++LDE T +D T+ + + +
Sbjct: 96 ----------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL 145
Query: 1239 SDCTVITIAHRITSVIDSDMVLLLSHGIIEE 1269
D T+I I H +T + D +L L +G I
Sbjct: 146 KDKTLIWITHHLTGIEHMDKILFLENGKIIM 176
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 9e-28
Identities = 73/215 (33%), Positives = 95/215 (44%), Gaps = 49/215 (22%)
Query: 630 SNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------- 682
L DINL V G VA+ G G GKS+LL I G SG + L G
Sbjct: 14 GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPD 73
Query: 683 -AYVAQS----PWIQSGNIEDNILFG-------KPMDREKYDRVLEACSLKKDLEILSFG 730
YV Q PW+ + DN+ G K RE+ +LE L F
Sbjct: 74 IGYVFQEDALLPWL---TVLDNVALGLELRGKSKAEARERAKELLELVGLAG------FE 124
Query: 731 D----QTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLL 786
D Q LSGG +QR+ IARAL + L D+PF A+DA T L ++ LL
Sbjct: 125 DKYPHQ---------LSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREEL-QDELL 174
Query: 787 GLLRS--KTVIYVTHQVE---FLPAADLILVMKDG 816
L KTV+ VTH V+ +L AD ++V+ +
Sbjct: 175 RLWEETRKTVLLVTHDVDEAVYL--ADRVVVLSNR 207
|
Length = 248 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 1e-27
Identities = 72/203 (35%), Positives = 99/203 (48%), Gaps = 41/203 (20%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK--------AYVA 686
L DI+L V G VA+ G G GKS+LL I G SG + + G YV
Sbjct: 20 LEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVF 79
Query: 687 QS----PWIQSGNIEDNILFG-------KPMDREKYDRVLEACSLKKDLEILSFGDQTVI 735
Q PW+ + DN+ G K RE+ + +LE L F +
Sbjct: 80 QQDALLPWL---TVLDNVALGLELQGVPKAEARERAEELLELVGLSG------FENAY-P 129
Query: 736 GERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRS--KT 793
+ LSGG +QR+ +ARAL D D+ L D+PFSA+DA T L +E LL + R KT
Sbjct: 130 HQ----LSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQL-QEELLDIWRETGKT 184
Query: 794 VIYVTHQVE---FLPAADLILVM 813
V+ VTH ++ FL AD ++V+
Sbjct: 185 VLLVTHDIDEAVFL--ADRVVVL 205
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 2e-27
Identities = 59/209 (28%), Positives = 89/209 (42%), Gaps = 58/209 (27%)
Query: 1059 NLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGI 1118
NL RY L ++ T G +VG GSGKSTL++ + +++PT+GEI+IDG
Sbjct: 4 NLSFRYGGRT--ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGK 61
Query: 1119 NISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKE 1178
+I+ + L +LR R+ +P QL
Sbjct: 62 DIAKLPLEELRRRIGYVP--------------------------------QL-------- 81
Query: 1179 GKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF 1238
S GQRQ V L R LL +L+LDE T+ +D A+ + + LR+
Sbjct: 82 --------------SGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELA 127
Query: 1239 SD-CTVITIAHRITSVID-SDMVLLLSHG 1265
+ TVI + H +D V++L G
Sbjct: 128 EEGRTVIIVTHDPELAELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 2e-27
Identities = 74/215 (34%), Positives = 101/215 (46%), Gaps = 35/215 (16%)
Query: 631 NNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKA------- 683
+ + DI+L + G V + G G GK++LL I G SG + L G
Sbjct: 17 DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEK 76
Query: 684 ----YVAQS----PWIQSGNIEDNILFG-----KPMDREKYDRVLEACSLKKDLEILSFG 730
V QS P + +E+N+ FG K E RV EA L + + F
Sbjct: 77 RPIGMVFQSYALFPHM---TVEENVAFGLKVRKKLKKAEIKARVEEALEL---VGLEGFA 130
Query: 731 DQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLR 790
D+ + LSGGQ+QR+ +ARAL + + L D+P SA+DA + KE L L R
Sbjct: 131 DR-----KPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKE-LKELQR 184
Query: 791 S--KTVIYVTH-QVEFLPAADLILVMKDGKITQAG 822
T +YVTH Q E L +D I VM DG+I Q G
Sbjct: 185 ELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVG 219
|
Length = 352 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 5e-27
Identities = 70/262 (26%), Positives = 120/262 (45%), Gaps = 41/262 (15%)
Query: 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEI 1113
+++ NL V Y VL ++ + G T ++G G+GKSTL++ + +++P++GEI
Sbjct: 4 MIEVENLTVSYGNRP--VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEI 61
Query: 1114 VIDGINISSIGLHDLRSRLSIIPQ----DPTMFEGTVR-----------NNLDPLEEYKD 1158
I G + R R+ +PQ D + F TV+ L +
Sbjct: 62 KIFGKPVRKR---RKRLRIGYVPQKSSVDRS-FPITVKDVVLLGRYGKKGWFRRLNKKDK 117
Query: 1159 EEIWEALDKCQLGDEVRNKE-GKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDE 1217
E++ EAL++ + D +R+++ G+L S GQ+Q V L R L + +L+LDE
Sbjct: 118 EKVDEALERVGMED-LRDRQIGEL-----------SGGQKQRVLLARALAQNPDLLLLDE 165
Query: 1218 ATASVDTATDNLIQQTLRQHFSD-CTVITIAHRITSVID-SDMVLLLSHGII-----EEY 1270
VD A I L++ + TV+ + H + V+ D V+ L+ +I EE
Sbjct: 166 PFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLIASGPPEEV 225
Query: 1271 DSPTKLLENKSSSFAQLVAEYT 1292
+ L + S A +A Y
Sbjct: 226 LTEENLEKAFGGSLAHALAGYR 247
|
Length = 254 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 7e-27
Identities = 67/224 (29%), Positives = 102/224 (45%), Gaps = 40/224 (17%)
Query: 631 NNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK-------- 682
+ L+D+NL + G V + G G GKS+LL I G SG + + G
Sbjct: 15 SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK 74
Query: 683 ---AYVAQS----PWIQSGNIEDNILFG---KPMDREKYDR----VLEACSLKKDLEILS 728
A V Q+ P + +NI FG + + + + D+ V + L+ L
Sbjct: 75 RGIAMVFQNYALYP---HMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLN--- 128
Query: 729 FGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL 788
+ LSGGQ+QR+ +ARAL + ++L D+P S +DA + + + L
Sbjct: 129 ----RKPLQ----LSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLM-RSEIKKL 179
Query: 789 LR--SKTVIYVTH-QVEFLPAADLILVMKDGKITQAGKYNDILN 829
T IYVTH QVE + AD I+VM DG+I Q G ++
Sbjct: 180 HERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYE 223
|
Length = 338 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 109 bits (276), Expect = 2e-26
Identities = 67/223 (30%), Positives = 107/223 (47%), Gaps = 33/223 (14%)
Query: 1059 NLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGI 1118
NL Y +L L+ + P G TGI+G GSGKSTL++ L +++P +GE+++DG
Sbjct: 7 NLSFGY--GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGK 64
Query: 1119 NISSIGLHDLRSRLSIIPQDPTMFEG-TVRN----------NLDPLEEYKDEEI-WEALD 1166
+I+S+ +L +L+ +PQ P+ G TV L +DEEI EAL+
Sbjct: 65 DIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALE 124
Query: 1167 KCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTAT 1226
L D V E S G+RQ V + R L +++ +L+LDE T+ +D A
Sbjct: 125 LLGLEHLA-------DRPVDE----LSGGERQRVLIARALAQETPILLLDEPTSHLDIAH 173
Query: 1227 DNLIQQTLRQ--HFSDCTVITIAHRITSVIDSDMVLLLSHGII 1267
+ + LR TV+ + H D ++ + +I
Sbjct: 174 QIEVLELLRDLNREKGLTVVMVLH------DLNLAARYADHLI 210
|
Length = 258 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 3e-26
Identities = 75/229 (32%), Positives = 101/229 (44%), Gaps = 50/229 (21%)
Query: 613 SETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKI 672
IE+ + ++ N P L DI+L V G A+ G G+GKS+LL ILG +
Sbjct: 1 MMPMIEVENLTVSYG---NRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS 57
Query: 673 SGTLKLCGTK----------AYVAQSPWI------------QSGNIEDNILFGKPM--DR 708
SG +K+ G YV Q + G F + D+
Sbjct: 58 SGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDK 117
Query: 709 EKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDP 768
EK D LE + + D+ IGE LSGGQKQR+ +ARAL Q+ D+ L D+P
Sbjct: 118 EKVDEALER------VGMEDLRDRQ-IGE----LSGGQKQRVLLARALAQNPDLLLLDEP 166
Query: 769 FSAVDAHTGSHLFKEVLLGLLRS--KTVIYVTHQVEFLPAADLILVMKD 815
F+ VD ++ LL LR KTV+ VTH DL LVM
Sbjct: 167 FTGVDVAGQKEIYD--LLKELRQEGKTVLMVTH--------DLGLVMAY 205
|
Length = 254 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 3e-26
Identities = 68/233 (29%), Positives = 100/233 (42%), Gaps = 52/233 (22%)
Query: 631 NNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK-------- 682
P L D++ + G + G GSGKS+LL C+ G + SG + L G
Sbjct: 14 GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKE 73
Query: 683 -----AYVAQSPWIQSGNI--EDNILFG-----------KPMDREKYDRVLEACSLKKDL 724
AYV QSP + + +L G D E + LE L
Sbjct: 74 LAKKLAYVPQSP-SAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGL---- 128
Query: 725 EILSFGDQTVIGERGIN-LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKE 783
+ +R ++ LSGG++QR+ IARAL Q+ I L D+P S +D H +
Sbjct: 129 --------EHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIA---HQIE- 176
Query: 784 VLLGLLRS------KTVIYVTHQVEF-LPAADLILVMKDGKITQAGKYNDILN 829
+L LLR TV+ V H + AD ++++KDGKI G ++L
Sbjct: 177 -VLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLT 228
|
Length = 258 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 105 bits (266), Expect = 5e-26
Identities = 61/213 (28%), Positives = 85/213 (39%), Gaps = 64/213 (30%)
Query: 631 NNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK-------- 682
L D++L + G V + G G+GKS+LL + G + SG + L G
Sbjct: 11 GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKE 70
Query: 683 -----AYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGE 737
AYV Q LE L + D
Sbjct: 71 LARKIAYVPQ--------------------------ALEL------LGLAHLAD------ 92
Query: 738 RGIN-LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRS----- 791
R N LSGG++QR+ +ARAL Q+ I L D+P S +D LL LLR
Sbjct: 93 RPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIE-----LLELLRRLARER 147
Query: 792 -KTVIYVTHQVEF-LPAADLILVMKDGKITQAG 822
KTV+ V H + AD ++++KDG+I G
Sbjct: 148 GKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 1e-25
Identities = 67/219 (30%), Positives = 108/219 (49%), Gaps = 24/219 (10%)
Query: 1059 NLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGI 1118
NL Y L ++ T G IVG GSGKSTL++ L ++ PT+GE+++DG
Sbjct: 4 NLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGK 63
Query: 1119 NISSIGLHDLRSRLSIIPQDP-TMFEG-TV--------RNNLDPLEEYKDEEIWEALDKC 1168
+++ + L +LR ++ ++ Q+P F G TV N P EE + E + EAL+
Sbjct: 64 DLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIE-ERVEEALELV 122
Query: 1169 QLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDN 1228
L EG D S GQ+Q V + VL +L+LDE TA +D A
Sbjct: 123 GL-------EGLRDRSP----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRR 171
Query: 1229 LIQQTLRQ-HFSDCTVITIAHRITSVID-SDMVLLLSHG 1265
+ + L++ T+I + H + +++ +D V++L G
Sbjct: 172 ELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 1e-25
Identities = 67/224 (29%), Positives = 103/224 (45%), Gaps = 36/224 (16%)
Query: 631 NNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPW 690
L+D++L++ G RV + G GSGKS+LL + G + SG + + G +S
Sbjct: 16 RKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLL 75
Query: 691 ---------IQSGN-------IEDNILFG---KPMDREKYDR----VLEACSLKKDLEIL 727
Q+ + +ED + FG + RE+ + LE L++ L+
Sbjct: 76 ELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRP 135
Query: 728 SFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL-L 786
F NLSGGQKQR+ IA L +I L D+P + +D L + + L
Sbjct: 136 PF-----------NLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKL 184
Query: 787 GLLRSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDILN 829
KT+I VTH +E + AD ++V+ DGKI G +I N
Sbjct: 185 KEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFN 228
|
Length = 235 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 111 bits (281), Expect = 3e-25
Identities = 81/288 (28%), Positives = 134/288 (46%), Gaps = 32/288 (11%)
Query: 560 ALATFRILQEPIYNLPDTISMIIQTKVSLDRIASFLCLDDLQSDVV--EKHPRGSSETAI 617
ALA F L P+ + Q S RI + + + +V + + ++
Sbjct: 287 ALAAFEALM-PV---AGAFQHLGQVIASARRINE---ITEQKPEVTFPTTSTAAADQVSL 339
Query: 618 EIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLK 677
+ + +F + P L+ ++L++ G +VA+ G G GKS+LL + G +
Sbjct: 340 TLNNVSFTYP-DQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEIL 398
Query: 678 LCGT--KAY-----------VAQSPWIQSGNIEDNILFGKP-MDREKYDRVLEACSLKKD 723
L G Y V+Q + S + DN+L P E VL+ L+K
Sbjct: 399 LNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKL 458
Query: 724 LEILSFGDQ---TVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHL 780
LE D+ +GE G LSGG+++R+ IARAL DA + L D+P +DA T +
Sbjct: 459 LE----DDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQI 514
Query: 781 FKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDIL 828
E+L ++KTV+ +TH++ L D I VM +G+I + G + ++L
Sbjct: 515 L-ELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELL 561
|
Length = 574 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 3e-25
Identities = 70/226 (30%), Positives = 105/226 (46%), Gaps = 42/226 (18%)
Query: 631 NNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--------- 681
L++++L+V G + G GSGKS LL I G + SG + L G
Sbjct: 11 KEFKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEK 70
Query: 682 --KAYVAQS----PWIQSGNIEDNILFG----KPMDREKYDRVLEACSLKKDLEILSFGD 731
+YV Q+ P + + NI +G K +E +VLE + + L I
Sbjct: 71 RDISYVPQNYALFPHM---TVYKNIAYGLKKRKVDKKEIERKVLE---IAEMLGI----- 119
Query: 732 QTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLR- 790
++ + LSGG++QR+ IARAL + I L D+PFSA+D T KE L L+
Sbjct: 120 DHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRT-----KEKLREELKK 174
Query: 791 -----SKTVIYVTH-QVEFLPAADLILVMKDGKITQAGKYNDILNS 830
TV++VTH E AD + +M +GK+ Q GK ++
Sbjct: 175 IRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 3e-25
Identities = 74/253 (29%), Positives = 112/253 (44%), Gaps = 44/253 (17%)
Query: 630 SNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------- 682
N + D+NL + G + + G GSGK++ L I + SG + + G
Sbjct: 12 GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPV 71
Query: 683 ------AYVAQSPWIQSG-----NIEDNILFGKPM---DREKYDRVLEACSLKKDLEILS 728
YV Q Q G + +NI + D+E+ + + L+
Sbjct: 72 ELRRKIGYVIQ----QIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSE 127
Query: 729 FGDQTVIGERGIN-LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL-- 785
+ D R + LSGGQ+QR+ +ARAL D I L D+PF A+D T L +E+
Sbjct: 128 YAD------RYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKEL 181
Query: 786 ---LGLLRSKTVIYVTHQV-EFLPAADLILVMKDGKITQAGKYNDIL-NSGTDFMV-LVG 839
LG KT+++VTH + E L AD I VM G+I Q ++IL N DF+ G
Sbjct: 182 QKELG----KTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPANDFVEDFFG 237
Query: 840 AHQQALSALDSIE 852
++ L L +
Sbjct: 238 ESERGLRLLSLVS 250
|
Length = 309 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 4e-25
Identities = 96/337 (28%), Positives = 151/337 (44%), Gaps = 48/337 (14%)
Query: 535 TFVSVATFGACMLLGIPLESGKILSALATFRILQ----EPIYNLPDTISMIIQTKVSLDR 590
TF + FGA +++G L G L F +L +P+ L QT ++L+R
Sbjct: 375 TFAILLWFGAHLVIGGALSPG----QLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALER 430
Query: 591 IASFLCLDDLQSDVVEKHPRGSSETAIEIVDG-------NFAWDISSNNPTLRDINLKVF 643
+ D L S PR + A+ + G F + S L ++NL +
Sbjct: 431 LG-----DILNSPT---EPRSAGLAALPELRGAITFENIRFRYAPDSP-EVLSNLNLDIK 481
Query: 644 HGMRVAVCGTVGSGKSSLLSCI-------LGEV------PKISGTLKLCGTKAYVAQSPW 690
G + + G GSGKS+L + G+V I+ L V Q
Sbjct: 482 PGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENV 541
Query: 691 IQSGNIEDNILFGKP-MDREKYDRVLEACSLKKDLEILS---FGDQTVIGERGINLSGGQ 746
+ S +I DNI P E V+ A L + +S G T +GE+G NLSGGQ
Sbjct: 542 LFSRSIRDNIALCNPGAPFE---HVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQ 598
Query: 747 KQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPA 806
+QRI IARAL + I +FD+ SA+D + L + + R +TVI + H++ + A
Sbjct: 599 RQRIAIARALVGNPRILIFDEATSALDYES-EALIMRNMREICRGRTVIIIAHRLSTVRA 657
Query: 807 ADLILVMKDGKITQAGKYNDILNSGTDFMVLVGAHQQ 843
D I+V++ G+I ++G++ ++L + L QQ
Sbjct: 658 CDRIIVLEKGQIAESGRHEELLALQGLYARL---WQQ 691
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 4e-25
Identities = 71/233 (30%), Positives = 124/233 (53%), Gaps = 16/233 (6%)
Query: 1061 QVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINI 1120
+V Y+ +L+ ++ F GG IVG +G+GKSTLI+ + R+++PT G I+IDG++I
Sbjct: 8 EVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDI 67
Query: 1121 SSIGLHDLRSRLSIIPQDPTMFEGTVRNNLD---PLEEYKDEEIWEALDKCQLGDEVRNK 1177
+I + DLR ++ ++ Q P +FEGTV++N++ L+ K+ ++ L L E
Sbjct: 68 KTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYA-- 125
Query: 1178 EGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLR-- 1235
T + +N S G+ Q V + R L +VL+LDE T+++D + +I++ +
Sbjct: 126 --------TRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKL 177
Query: 1236 QHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENKSSSFAQL 1287
++ + TVI I H + D L+ GI+ EY N + +L
Sbjct: 178 KNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTKL 230
|
Length = 241 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 5e-25
Identities = 69/239 (28%), Positives = 120/239 (50%), Gaps = 31/239 (12%)
Query: 613 SETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKI 672
I++ + +F++ +S N L++++ ++ G VA+ G GSGKS++ + G +
Sbjct: 4 KSVMIKVENVSFSYP-NSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ 62
Query: 673 SGTLKLCGTK-------------AYVAQSPWIQ--SGNIEDNILFG---KPMDREKYDRV 714
SG +K+ G + Q+P Q +ED+I FG K + +K +
Sbjct: 63 SGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDI 122
Query: 715 LEACSLKKDLE-ILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVD 773
++ + K +E L Q NLSGGQKQR+ IA L + +I +FD+ S +D
Sbjct: 123 IDDLAKKVGMEDYLDKEPQ--------NLSGGQKQRVAIASVLALNPEIIIFDESTSMLD 174
Query: 774 AHTGSHLFKEVLLGL--LRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNS 830
G K++++ L R KT+I +TH ++ AD ++V +GK+ GK +ILN+
Sbjct: 175 PK-GKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232
|
Length = 271 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 6e-25
Identities = 65/237 (27%), Positives = 117/237 (49%), Gaps = 27/237 (11%)
Query: 1059 NLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGI 1118
NL RY L+ ++ G + ++G GSGKSTL++ L +++PT+GE+++DG+
Sbjct: 8 NLSFRYPGRKA-ALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGL 66
Query: 1119 NISSI-GLHDLRSRLSIIPQDPTM--FEGTVRNNLD--------PLEEYKDEEIWEALDK 1167
+ SS L +LR ++ ++ Q+P F TV + + P EE +E + EAL+
Sbjct: 67 DTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREE-IEERVAEALEL 125
Query: 1168 CQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATD 1227
L + ++ N S GQ+Q V + VL ++L+LDE TA +D
Sbjct: 126 VGLEEL-LDRPPF----------NLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGR 174
Query: 1228 NLIQQTLR--QHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENKS 1281
+ + L+ + T+I + H + V++ +D V++L G I P ++ +
Sbjct: 175 RELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDAE 231
|
Length = 235 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 102 bits (258), Expect = 1e-24
Identities = 63/226 (27%), Positives = 103/226 (45%), Gaps = 36/226 (15%)
Query: 1059 NLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGI 1118
+L V Y H VL ++ G IVG G+GKSTL++ + +++PT+G I + G
Sbjct: 4 DLTVSYGGHP--VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGK 61
Query: 1119 NISSIGLHDLRSRLSIIPQ----DPTMFEGTVR-----------NNLDPLEEYKDEEIWE 1163
+ R R+ +PQ D F +VR L + ++ E
Sbjct: 62 PLE-----KERKRIGYVPQRRSIDRD-FPISVRDVVLMGLYGHKGLFRRLSKADKAKVDE 115
Query: 1164 ALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVD 1223
AL++ L + D ++ E S GQ+Q V L R L++ +L+LDE A VD
Sbjct: 116 ALERVGLSE-------LADRQIGE----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVD 164
Query: 1224 TATDNLIQQTLRQ-HFSDCTVITIAHRITSVIDS-DMVLLLSHGII 1267
T I + LR+ T++ + H + V++ D VLLL+ ++
Sbjct: 165 PKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTVV 210
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 2e-24
Identities = 44/199 (22%), Positives = 91/199 (45%), Gaps = 15/199 (7%)
Query: 1069 PLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDL 1128
L+ + P G IVG GSGKS+L+ L +E +G + + G
Sbjct: 18 SFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG----------- 66
Query: 1129 RSRLSIIPQDPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTEN 1188
++ + Q+P + GT+R N+ + + +E + + C L ++ + + E
Sbjct: 67 --SIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEK 124
Query: 1189 GENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTAT-DNLIQQTLRQHFSDC-TVITI 1246
G N S GQ+Q + L R + + + +LD+ ++VD ++ + + + T I +
Sbjct: 125 GINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILV 184
Query: 1247 AHRITSVIDSDMVLLLSHG 1265
H++ + +D +++L +G
Sbjct: 185 THQLQLLPHADQIVVLDNG 203
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 3e-24
Identities = 67/216 (31%), Positives = 101/216 (46%), Gaps = 45/216 (20%)
Query: 633 PTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTLKLCGTKA-------- 683
L+ ++L + G VA+ G GSGKS+LL+ + G + P SG +++ GT
Sbjct: 18 QALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT-SGEVRVDGTDISKLSEKEL 76
Query: 684 ---------YVAQSP-WIQSGNIEDNILF-----GKPMDREKYDRVLEACSLKKDLEILS 728
+V QS + +N+ G P +E+ +R E LE +
Sbjct: 77 AAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVP-KKERRERAEEL------LERVG 129
Query: 729 FGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL 788
GD + LSGGQ+QR+ IARAL D I L D+P +D+ TG + ++ L
Sbjct: 130 LGD--RLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETG-----KEVMEL 182
Query: 789 LRS------KTVIYVTHQVEFLPAADLILVMKDGKI 818
LR T++ VTH E AD I+ ++DGKI
Sbjct: 183 LRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 4e-24
Identities = 77/245 (31%), Positives = 130/245 (53%), Gaps = 29/245 (11%)
Query: 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEV--PKIS 673
A+E D +F++D S + D++ + G VA+ G G+GKS+L++ +L V P+ S
Sbjct: 334 AVEFDDVSFSYDNSR--QGVEDVSFEAKPGQTVAIVGPTGAGKSTLIN-LLQRVFDPQ-S 389
Query: 674 GTLKLCGTK-------------AYVAQSPWIQSGNIEDNILFGKP--MDREKYDRVLEAC 718
G + + GT A V Q + + +IEDNI G+P D E + A
Sbjct: 390 GRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEE----MRAAA 445
Query: 719 SLKKDLEIL---SFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAH 775
+ + + G TV+GERG LSGG++QR+ IARAL +D I + D+ SA+D
Sbjct: 446 ERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVE 505
Query: 776 TGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSGTDFM 835
T + + K L L++ +T + H++ + AD ILV +G++ ++G +++++ G F
Sbjct: 506 TEAKV-KAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVARGGRFA 564
Query: 836 VLVGA 840
L+ A
Sbjct: 565 ALLRA 569
|
Length = 588 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 99.4 bits (249), Expect = 9e-24
Identities = 58/212 (27%), Positives = 97/212 (45%), Gaps = 46/212 (21%)
Query: 1059 NLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGI 1118
NL V Y VL L+ + G GI+G G+GKSTL++TL +++P++GEI++DG
Sbjct: 4 NLSVGYGGRT--VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGK 61
Query: 1119 NISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKE 1178
+++S+ +L +++ +PQ AL+ L
Sbjct: 62 DLASLSPKELARKIAYVPQ--------------------------ALELLGLAH------ 89
Query: 1179 GKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVD----TATDNLIQQTL 1234
D E S G+RQ V L R L ++ +L+LDE T+ +D L+++
Sbjct: 90 -LADRPFNE----LSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLA 144
Query: 1235 RQHFSDCTVITIAHRITSVID-SDMVLLLSHG 1265
R+ TV+ + H + +D V+LL G
Sbjct: 145 RER--GKTVVMVLHDLNLAARYADRVILLKDG 174
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 1e-23
Identities = 112/453 (24%), Positives = 188/453 (41%), Gaps = 72/453 (15%)
Query: 423 LVILQVSLALLILYKNLGLASIAALFATVLIMLTNFPLGRLQENFQDKLMGSKDKRMKVT 482
V+L L++LY + L I FA + +L + R + + +L K V
Sbjct: 278 AVMLVFYALLMLLYDPV-LTLIGIAFA-AINVLALQLVSRRRVDANRRLQQDAGKLTGVA 335
Query: 483 SEILRNMRILKLQGWEMKFLSKIIELRKIEAGWLKKFLYT----GAMTSFVFWGA-PTFV 537
L+++ LK G E F S+ AG+ K L G +T + G PT +
Sbjct: 336 ISGLQSIETLKASGLESDFFSRW-------AGYQAKLLNAQQELGVLTQIL--GVLPTLL 386
Query: 538 SVATFGACMLLG--IPLESGKILSALATFRIL----QEPIYNLPDTISMIIQTKVSLDRI 591
+ +++G +E + L F+ L EP+ NL + + + L+R
Sbjct: 387 TSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNR- 445
Query: 592 ASFLCLDDLQS---DVVEKHPRGSSETA---------IEIVDGNFAWDISSNNPTLRDIN 639
LDD+ D + + + + +E+ + F + P + + +
Sbjct: 446 -----LDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFS 499
Query: 640 LKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK-------------AYVA 686
L + G RVA+ G GSGKS++ + G SG + G A V
Sbjct: 500 LTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVD 559
Query: 687 QSPWIQSGNIEDNI-LFGKPMDREKYDRVLEACSLKKDLEI------LSFGDQTVIGERG 739
Q ++ G + DN+ L+ + ++ AC KD I G + E G
Sbjct: 560 QDIFLFEGTVRDNLTLWDPTIPDA---DLVRAC---KDAAIHDVITSRPGGYDAELAEGG 613
Query: 740 INLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSK-TVIYVT 798
NLSGGQ+QR++IARAL ++ I + D+ SA+D T K + L R T I V
Sbjct: 614 ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETE----KIIDDNLRRRGCTCIIVA 669
Query: 799 HQVEFLPAADLILVMKDGKITQAGKYNDILNSG 831
H++ + D I+V++ GK+ Q G + ++ G
Sbjct: 670 HRLSTIRDCDEIIVLERGKVVQRGTHEELWAVG 702
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 1e-23
Identities = 56/222 (25%), Positives = 94/222 (42%), Gaps = 41/222 (18%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------------ 682
L ++ +V G + G G+GK++LL + G + SG + + G
Sbjct: 21 LDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRI 80
Query: 683 AYVAQS----PWIQSGNIEDNI-----LFGKPMDREKYDRVLEACSLKKDLEILSFGDQT 733
YV Q P + + +N+ L+G E +R+ E L FG +
Sbjct: 81 GYVPQEPSLYPEL---TVRENLEFFARLYGLS-KEEAEERIEELLEL--------FGLED 128
Query: 734 VIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRS-- 791
++ LSGG KQR+ IA AL D ++ + D+P S +D + E+L L +
Sbjct: 129 KANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPES-RREIWELLRELAKEGG 187
Query: 792 KTVIYVTHQ---VEFLPAADLILVMKDGKITQAGKYNDILNS 830
T++ TH E L D ++++ DGKI G ++
Sbjct: 188 VTILLSTHILEEAEEL--CDRVIILNDGKIIAEGTPEELKEK 227
|
Length = 293 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 2e-23
Identities = 105/420 (25%), Positives = 180/420 (42%), Gaps = 36/420 (8%)
Query: 443 SIAALFATVLIMLTNFPLGRLQENFQDKLMGSKDKRMKVTSEILRNMRILKLQGWE---- 498
++ L L+ L G+ + ++L + K +V E L MR ++ E
Sbjct: 304 TMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEA 363
Query: 499 MKFLSKIIELRKIEAGWLKKFLYTGAMTSFVFWGAPTFVSVATFGACMLLGIPLESGKIL 558
+F + E ++ K Y G + + G V V +G ++L + SG ++
Sbjct: 364 SRFKEALEETLQL--NKRKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLV 421
Query: 559 SALATFRILQEPIYNLPDTISMIIQTKVSLDRIASFLCLD---DLQSDVVEKHPRGSSET 615
S L L E + L S ++Q + +++ +L D ++ E
Sbjct: 422 SFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYL--DRKPNIPLTGTLAPLN--LEG 477
Query: 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGT 675
IE D +F++ + P L+ + + G VA+ G GSGKS++ + + G
Sbjct: 478 LIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQ 537
Query: 676 LKLCGTK-------------AYVAQSPWIQSGNIEDNILFG-KPMDREKYDRVLEACSLK 721
+ L G A V Q P + SG++ +NI +G E+ +A +
Sbjct: 538 VLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAH 597
Query: 722 KDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLF 781
+ G T +GE+G LSGGQKQRI IARAL + + + D+ SA+DA
Sbjct: 598 DFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAEC----- 652
Query: 782 KEVLLGLLRS---KTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSGTDFMVLV 838
E LL RS +TV+ + H++ + AD ILV+K G + + G + ++ + LV
Sbjct: 653 -EQLLQESRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGCYKHLV 711
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 2e-23
Identities = 62/220 (28%), Positives = 101/220 (45%), Gaps = 2/220 (0%)
Query: 1053 GEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGE 1112
G + + N+ + LRG++ + G I+G +GSGKSTL + + I PT+G
Sbjct: 315 GHLSVENVTIVPPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGS 374
Query: 1113 IVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEEYKD-EEIWEALDKCQLG 1171
+ +DG ++ + +PQD +F GTV N+ E D E+I EA +
Sbjct: 375 VRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVH 434
Query: 1172 DEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDN-LI 1230
+ + D+ + G S GQRQ + L R L K++VLDE +++D + L
Sbjct: 435 ELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALA 494
Query: 1231 QQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEY 1270
TV+ I HR + + D +L+L G I +
Sbjct: 495 NAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARF 534
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 2e-23
Identities = 65/223 (29%), Positives = 103/223 (46%), Gaps = 55/223 (24%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT----------KAY 684
L+D++L + G VA+ G G+GKS+LL C+ G V SG++ + GT +
Sbjct: 17 LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQL 76
Query: 685 VAQSPWI-QSGN-IE-----DNILFGK---------------PMDREKYDRVLEACSLKK 722
Q I Q N IE +N+L G+ ++++ A + +
Sbjct: 77 RRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQR------ALAALE 130
Query: 723 DLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFK 782
+ +L Q R LSGGQ+QR+ IARAL Q + L D+P +++D +
Sbjct: 131 RVGLLDKAYQ-----RADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASS----- 180
Query: 783 EVLLGLLRS------KTVIYVTHQVEF-LPAADLILVMKDGKI 818
++ LL+ TVI HQV+ AD I+ +KDG+I
Sbjct: 181 RQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRI 223
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 99.7 bits (249), Expect = 3e-23
Identities = 73/229 (31%), Positives = 108/229 (47%), Gaps = 39/229 (17%)
Query: 633 PTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK---------- 682
+ ++NL++ G + + G GSGK++ + I + SG + + G
Sbjct: 15 KAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELR 74
Query: 683 ---AYVAQSPWIQSG-----NIEDNI-----LFGKPMDREKYD-RVLEACSLKKDLEILS 728
YV Q Q G +E+NI L P +EK R E +L L+
Sbjct: 75 RKIGYVIQ----QIGLFPHMTVEENIALVPKLLKWP--KEKIRERADELLALV-GLDPAE 127
Query: 729 FGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL-LG 787
F D+ E LSGGQ+QR+ +ARAL D + L D+PF A+D T L +E L
Sbjct: 128 FADRYP-HE----LSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQ 182
Query: 788 LLRSKTVIYVTHQV-EFLPAADLILVMKDGKITQAGKYNDILNS-GTDF 834
KT+++VTH + E AD I +MK+G+I Q G ++IL S DF
Sbjct: 183 QELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSPANDF 231
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 99.5 bits (249), Expect = 3e-23
Identities = 66/232 (28%), Positives = 106/232 (45%), Gaps = 31/232 (13%)
Query: 1059 NLQVRYAPHLPLV--LRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVID 1116
NL V + V L ++ + G G+VG +GSGKSTL + + +++PT+G I+ D
Sbjct: 6 NLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFD 65
Query: 1117 GINISSIGLHDL---RSRLSIIPQD------PTMFEGTVRNNL-DPLE----EYKDEEIW 1162
G ++ + R + ++ QD P M T+ + +PL K E
Sbjct: 66 GKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRM---TIGEQIAEPLRIHGKLSKKEARK 122
Query: 1163 EALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASV 1222
EA+ L V E L+ E S GQRQ V + R L K+L+ DE T+++
Sbjct: 123 EAV--LLLLVGVGLPEEVLNRYPHE----LSGGQRQRVAIARALALNPKLLIADEPTSAL 176
Query: 1223 DTATDNLIQQTLR--QHFSDCTVITIAHRITSVID--SDMVLLLSHG-IIEE 1269
D + I L+ Q T++ I H + V+ +D V ++ G I+EE
Sbjct: 177 DVSVQAQILDLLKKLQEELGLTLLFITHDL-GVVAKIADRVAVMYAGKIVEE 227
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 97.6 bits (244), Expect = 4e-23
Identities = 64/190 (33%), Positives = 92/190 (48%), Gaps = 34/190 (17%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSG 694
L D++L + G VA+ G GSGKS+LL CI G SG++ + G +
Sbjct: 16 LNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGED--------LTDL 67
Query: 695 NIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIAR 754
E P R + V + +L F TV+ + LSGGQ+QR+ +AR
Sbjct: 68 EDEL------PPLRRRIGMVFQDFAL--------FPHLTVLENIALGLSGGQQQRVALAR 113
Query: 755 ALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRS------KTVIYVTHQVEFLPA-A 807
AL D D+ L D+P SA+D T EV LL+S TV+ VTH ++ A
Sbjct: 114 ALAMDPDVLLLDEPTSALDPITRR----EVRA-LLKSLQAQLGITVVLVTHDLDEAARLA 168
Query: 808 DLILVMKDGK 817
D ++V++DGK
Sbjct: 169 DRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 98.7 bits (247), Expect = 6e-23
Identities = 66/220 (30%), Positives = 100/220 (45%), Gaps = 44/220 (20%)
Query: 631 NNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTLKLCGTK------- 682
L+D+NL++ G VA+ G GSGKS+LL+ + G + P SG + + G
Sbjct: 17 KVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT-SGEVLINGKDLTKLSEK 75
Query: 683 ----------AYVAQS-PWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGD 731
+V Q+ + + +N+ P+ + E+L
Sbjct: 76 ELAKLRRKKIGFVFQNFNLLPDLTVLENVEL--PL---LIAGKSAGRRKRAAEELLEVLG 130
Query: 732 QTVIGERGIN-----LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLL 786
+ +R + LSGGQ+QR+ IARAL + I L D+P +D+ T KEVL
Sbjct: 131 ---LEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTA----KEVLE 183
Query: 787 GLLRS------KTVIYVTHQVEFLPAADLILVMKDGKITQ 820
LLR KT+I VTH E AD ++ +KDGKI +
Sbjct: 184 -LLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222
|
Length = 226 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 96.5 bits (241), Expect = 8e-23
Identities = 57/202 (28%), Positives = 87/202 (43%), Gaps = 56/202 (27%)
Query: 631 NNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK-------- 682
P LR+++ + G +A+ G GSGKS+L ILG + SG ++L G
Sbjct: 14 EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNE 73
Query: 683 -----AYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGE 737
Y+ Q + SG+I +NIL
Sbjct: 74 LGDHVGYLPQDDELFSGSIAENIL------------------------------------ 97
Query: 738 RGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LRSKTVIY 796
SGGQ+QR+ +ARALY + I + D+P S +D G + + L T I
Sbjct: 98 -----SGGQRQRLGLARALYGNPRILVLDEPNSHLD-VEGERALNQAIAALKAAGATRIV 151
Query: 797 VTHQVEFLPAADLILVMKDGKI 818
+ H+ E L +AD ILV++DG++
Sbjct: 152 IAHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 96.2 bits (240), Expect = 1e-22
Identities = 55/206 (26%), Positives = 100/206 (48%), Gaps = 28/206 (13%)
Query: 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 676
+ I + +F++ L++++L++ G ++A+ G GSGKS+LL + G++ G +
Sbjct: 1 LSINNVSFSYP-EQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI 59
Query: 677 KLCGTKAYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIG 736
L G + + I +++ Y L +L+ +L
Sbjct: 60 TLDGVPVSDLE------KALSSLISV---LNQRPY---LFDTTLRNNL------------ 95
Query: 737 ERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIY 796
G SGG++QR+ +AR L QDA I L D+P +D T L ++ +L+ KT+I+
Sbjct: 96 --GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLL-SLIFEVLKDKTLIW 152
Query: 797 VTHQVEFLPAADLILVMKDGKITQAG 822
+TH + + D IL +++GKI G
Sbjct: 153 ITHHLTGIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 97.3 bits (243), Expect = 1e-22
Identities = 63/221 (28%), Positives = 102/221 (46%), Gaps = 26/221 (11%)
Query: 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIV 1114
+ + NL RY L G++ T GM G++G G+GK+TL++ L + P++G I
Sbjct: 1 LQLENLTKRY-GKK-RALDGVSLTLGPGM-YGLLGPNGAGKTTLMRILATLTPPSSGTIR 57
Query: 1115 IDGINISSIGLHDLRSRLSIIPQDPTMFEG-TVRNNLDPLEEYK-------DEEIWEALD 1166
IDG ++ LR R+ +PQ+ ++ TVR LD + K + E L+
Sbjct: 58 IDGQDVLKQP-QKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLE 116
Query: 1167 KCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTAT 1226
LGD + K G L S G R+ V + + L+ +L++DE TA +D
Sbjct: 117 LVNLGDRAKKKIGSL-----------SGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEE 165
Query: 1227 DNLIQQTLRQHFSDCTVITIAHRITSVIDS--DMVLLLSHG 1265
+ L + D VI H I ++S + V +L+ G
Sbjct: 166 RIRFRNLLSELGEDRIVILSTH-IVEDVESLCNQVAVLNKG 205
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 1e-22
Identities = 64/238 (26%), Positives = 105/238 (44%), Gaps = 37/238 (15%)
Query: 1069 PLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINI---SSIGL 1125
L ++ P G GI+G +G+GKSTL++ + + PT+G + +DG ++ S L
Sbjct: 19 VTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAEL 78
Query: 1126 HDLRSRLSIIPQDPTMFEG-TVRNNLD-PLE--EYKDEEI----WEALDKCQLGDEVRNK 1177
LR ++ +I Q + TV N+ PLE EI E L+ L D+
Sbjct: 79 RQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRY 138
Query: 1178 EGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDN-------LI 1230
+L S GQ+Q V + R L K+L+ DEAT+++D T I
Sbjct: 139 PAQL-----------SGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDI 187
Query: 1231 QQTLRQHFSDCTVITIAHRITSVIDS--DMVLLLSHGIIEEYDSPTKLLENKSSSFAQ 1286
+ L T++ I H + V+ D V +L G + E + +++ N + Q
Sbjct: 188 NREL-----GLTIVLITHEM-EVVKRICDRVAVLDQGRLVEEGTVSEVFANPKHAITQ 239
|
Length = 339 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 2e-22
Identities = 81/276 (29%), Positives = 130/276 (47%), Gaps = 21/276 (7%)
Query: 567 LQEPIYNLPDTISMIIQTKVSLDRIASFLCLDDLQSDVVEKHPRGSSETAIEIVDGNFAW 626
L EP+ L SM+ Q V+ +R+ F +D + R I+I + +FA+
Sbjct: 294 LNEPLIELTTQQSMLQQAVVAGERV--FELMDGPRQQYGNDD-RPLQSGRIDIDNVSFAY 350
Query: 627 DISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK---- 682
+N L++INL V VA+ G GSGKS+L S ++G P G ++L G
Sbjct: 351 R--DDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSL 408
Query: 683 ---------AYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQT 733
A V Q P + + N+ G+ + E+ + LE L + L G T
Sbjct: 409 SHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYT 468
Query: 734 VIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKT 793
+GE+G NLS GQKQ + +AR L Q I + D+ + +D+ T + + L +R T
Sbjct: 469 PLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQA--LAAVREHT 526
Query: 794 VIYV-THQVEFLPAADLILVMKDGKITQAGKYNDIL 828
+ V H++ + AD ILV+ G+ + G + +L
Sbjct: 527 TLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLL 562
|
Length = 592 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 93.5 bits (233), Expect = 2e-22
Identities = 45/129 (34%), Positives = 69/129 (53%), Gaps = 14/129 (10%)
Query: 1096 STLIQTLFRIVEPTAGEIVIDGINISSIG-LHDLRSRLSIIPQDPT-MFEGTVRNNLDP- 1152
STL++ + +++PT+G I++DG + + + LR R+ ++ QDP E TVR NL
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 1153 -LEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSK 1211
++ D EAL++ L D + V S GQ+Q V + R LLKK K
Sbjct: 61 LRDKEADARAEEALERVGLPDFLD------REPVGT----LSGGQKQRVAIARALLKKPK 110
Query: 1212 VLVLDEATA 1220
+L+LDE TA
Sbjct: 111 LLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 96.4 bits (240), Expect = 3e-22
Identities = 60/211 (28%), Positives = 105/211 (49%), Gaps = 19/211 (9%)
Query: 624 FAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK- 682
FA+ + L+D++ + G A+ G GSGKS++++ + G + L G
Sbjct: 19 FAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPI 78
Query: 683 ------------AYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACS---LKKDLEIL 727
+ V Q P + + +++DNI +G + ++ V EA + L
Sbjct: 79 SQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYG--LQSCSFECVKEAAQKAHAHSFISEL 136
Query: 728 SFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLG 787
+ G T +GE+G LSGGQKQR+ IARAL ++ + + D+ SA+DA + ++ L
Sbjct: 137 ASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAES-EQQVQQALYD 195
Query: 788 LLRSKTVIYVTHQVEFLPAADLILVMKDGKI 818
+TV+ + H++ + AD ILV+ G+I
Sbjct: 196 WPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 3e-22
Identities = 72/231 (31%), Positives = 120/231 (51%), Gaps = 23/231 (9%)
Query: 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 676
IE + F + P LR+IN K+ G VA+ G GSGKS++ + + G +
Sbjct: 342 IEFRNVTFTYP-GKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEI 400
Query: 677 KLCGTK-------------AYVAQSPWIQSGNIEDNILFGKPMDREKYDR--VLEACSLK 721
L G A V+Q+ + + I +NI + + E+Y R + EA +
Sbjct: 401 LLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYAR---TEQYSREQIEEAARMA 457
Query: 722 KDLEILSFGDQ---TVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGS 778
++ ++ D TVIGE G+ LSGGQ+QRI IARAL +D+ I + D+ SA+D +
Sbjct: 458 YAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTES-E 516
Query: 779 HLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILN 829
+ L L +++T + + H++ + AD ILV++DG+I + G + ++L
Sbjct: 517 RAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLA 567
|
Length = 582 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 3e-22
Identities = 64/214 (29%), Positives = 106/214 (49%), Gaps = 8/214 (3%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS 1130
+L+G++ G GI+G +GSGKSTL + L I PT+G + +DG ++ L
Sbjct: 351 ILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGR 410
Query: 1131 RLSIIPQDPTMFEGTVRNNLDPLEEYKD-EEIWEALDKCQLGDEVRNKEGKLDSRVTENG 1189
+ +PQD +F+GT+ N+ E D E++ EA + + + D+R+ E G
Sbjct: 411 HIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGG 470
Query: 1190 ENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDT----ATDNLIQQTLRQHFSDCTVIT 1245
S GQRQ + L R L ++VLDE +++D+ A I + TV+
Sbjct: 471 ATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKAR---GGTVVV 527
Query: 1246 IAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLEN 1279
IAHR +++ D +L+L G I + ++L
Sbjct: 528 IAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561
|
Length = 580 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 97.2 bits (243), Expect = 3e-22
Identities = 61/229 (26%), Positives = 112/229 (48%), Gaps = 32/229 (13%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGEIVIDGINI--SSI 1123
L+ + P T ++G +G GKSTL++ L R+ + GE+++DG NI +
Sbjct: 22 ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKV 81
Query: 1124 GLHDLRSRLSIIPQDPTMFEGTVRNNLD---PLEEYKDEEIWE----ALDKCQLGDEVRN 1176
+ +LR R+ ++ Q P F ++ +N+ L KD+E+ E +L K L DEV++
Sbjct: 82 DVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD 141
Query: 1177 KEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQ 1236
+ L ++ S GQ+Q +C+ R L K +VL++DE T+++D + I++ + +
Sbjct: 142 R---LH----KSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITE 194
Query: 1237 HFSDCTVITIAH------RITSVIDSDMVLLLSHGIIEEYDSPTKLLEN 1279
T++ + H R+ SD G + E+ K+ N
Sbjct: 195 LKKKYTIVIVTHNMQQAARV-----SDYTAFFYLGELVEFGPTDKIFTN 238
|
Length = 253 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 95.8 bits (239), Expect = 3e-22
Identities = 72/218 (33%), Positives = 106/218 (48%), Gaps = 42/218 (19%)
Query: 631 NNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTLKLCGTK------- 682
N L D+NL + G V + G G GK++ L I G E P SG + + G
Sbjct: 12 NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT-SGRIYIGGRDVTDLPPK 70
Query: 683 ----AYVAQS----PWIQSGNIEDNILFG---KPMDREKYD-RVLEACSLKKDLEILSFG 730
A V Q+ P + + DNI FG + + +++ D RV E L L+I
Sbjct: 71 DRDIAMVFQNYALYPHM---TVYDNIAFGLKLRKVPKDEIDERVREVAEL---LQI---- 120
Query: 731 DQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLR 790
+ ++ + LSGGQ+QR+ + RA+ ++ ++L D+P S +DA L ++ L R
Sbjct: 121 -EHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDA----KLRVQMRAELKR 175
Query: 791 -----SKTVIYVTH-QVEFLPAADLILVMKDGKITQAG 822
T IYVTH QVE + AD I VM DG+I Q G
Sbjct: 176 LQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 94.4 bits (236), Expect = 4e-22
Identities = 51/216 (23%), Positives = 96/216 (44%), Gaps = 46/216 (21%)
Query: 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIV 1114
+++ NL RY L ++ T G G++G G+GK+TLI+ + +++P +GEI
Sbjct: 1 IEVRNLSKRYGKKT--ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIK 58
Query: 1115 IDGINISSIGLHDLRSRLSIIPQDPTMFEG-TVRNNLDPLEEYKDEEIWEALDKCQLGDE 1173
+ G +I +++ R+ +P++P+++E TVR NL
Sbjct: 59 VLGKDIKKEP-EEVKRRIGYLPEEPSLYENLTVRENLK---------------------- 95
Query: 1174 VRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQT 1233
S G +Q + L + LL ++L+LDE T+ +D + +
Sbjct: 96 ------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWEL 137
Query: 1234 LRQH-FSDCTVITIAHRITSVID-SDMVLLLSHGII 1267
LR+ T++ +H + D V +L++G I
Sbjct: 138 LRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 94.9 bits (237), Expect = 7e-22
Identities = 68/214 (31%), Positives = 102/214 (47%), Gaps = 38/214 (17%)
Query: 631 NNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTLKLCGTKAYVAQSP 689
+ L+ I+L V G V + G GSGKS+LL CI E P SGT+ + G K +
Sbjct: 12 DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD-SGTIIIDGLKLTDDKKN 70
Query: 690 WI----------QSGN------IEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQT 733
Q N + +NI P+ + + EA ++ LE+L ++
Sbjct: 71 INELRQKVGMVFQQFNLFPHLTVLENITLA-PIKVKGMSKA-EA--EERALELL---EKV 123
Query: 734 VIGERG----INLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL---L 786
+ ++ LSGGQ+QR+ IARAL + + LFD+P SA+D L EVL
Sbjct: 124 GLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALD----PELVGEVLDVMK 179
Query: 787 GLLRSK-TVIYVTHQVEF-LPAADLILVMKDGKI 818
L T++ VTH++ F AD ++ M DG+I
Sbjct: 180 DLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 98.2 bits (245), Expect = 7e-22
Identities = 65/231 (28%), Positives = 105/231 (45%), Gaps = 42/231 (18%)
Query: 633 PTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTLKLCGTKAYVAQSPWI 691
L DI+L + G VA+ G G+GKS+LL I G E P +G ++L G + + +
Sbjct: 16 GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD-AGRIRLNGRVLFDVSNLAV 74
Query: 692 QSGNI---------------EDNILFG---------KPMDREKYDRVLEACSLKKDLEIL 727
+ + DNI FG + R + + +L L+
Sbjct: 75 RDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEG----- 129
Query: 728 SFGDQTVIGERGIN-LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLL 786
+ +R LSGGQ+QR+ +ARAL + + L D+PF A+DA L + +
Sbjct: 130 -------LADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRK 182
Query: 787 GLLRSK-TVIYVTH-QVEFLPAADLILVMKDGKITQAGKYNDIL-NSGTDF 834
R T ++VTH Q E L AD ++V+ G+I Q G +++ + + F
Sbjct: 183 LHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPASRF 233
|
Length = 345 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 96.2 bits (240), Expect = 1e-21
Identities = 67/233 (28%), Positives = 118/233 (50%), Gaps = 14/233 (6%)
Query: 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIV 1114
+ + N+ Y L+ ++ G I+G GSGKST+ + L +++P +GEI
Sbjct: 8 IKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIK 67
Query: 1115 IDGINISSIGLHDLRSRLSIIPQDP-TMFEG-TVRNNLD-PLEE--YKDEEIWEALDKCQ 1169
IDGI IS L ++R ++ II Q+P F G TV +++ LE +++ + +D
Sbjct: 68 IDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDD-- 125
Query: 1170 LGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNL 1229
L +V E LD + +N S GQ+Q V + VL ++++ DE+T+ +D
Sbjct: 126 LAKKV-GMEDYLD----KEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKRE 180
Query: 1230 IQQTLR--QHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENK 1280
I++ + + T+I+I H + I +D V++ S G + P ++L NK
Sbjct: 181 IKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNNK 233
|
Length = 271 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 95.5 bits (238), Expect = 1e-21
Identities = 67/201 (33%), Positives = 102/201 (50%), Gaps = 34/201 (16%)
Query: 633 PTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--------KAY 684
P L DINL + G + V G G GK++LL+ I G VP G++ L G +
Sbjct: 15 PALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGV 74
Query: 685 VAQS----PWIQSGNIEDNILFG---KPMDREKYDRVLEACSLKKDLEILSFGDQTVIGE 737
V Q+ PW N++DN+ FG +++ + + K LE +
Sbjct: 75 VFQNEGLLPWR---NVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLE--------GAEK 123
Query: 738 RGI-NLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLR--SKTV 794
R I LSGGQ+QR+ IARAL + + L D+PF A+DA T + + +LL L + K V
Sbjct: 124 RYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQM-QTLLLKLWQETGKQV 182
Query: 795 IYVTHQVE---FLPAADLILV 812
+ +TH +E F+ A +L+L+
Sbjct: 183 LLITHDIEEAVFM-ATELVLL 202
|
Length = 255 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 95.3 bits (237), Expect = 1e-21
Identities = 75/226 (33%), Positives = 109/226 (48%), Gaps = 36/226 (15%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKA----------- 683
L D+NL+V G VA+ G GSGKS+LL I G SG ++L G A
Sbjct: 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIG 75
Query: 684 YVAQS-PWIQSGNIEDNILFG----KPMDREKYDRVLEACSLKKDLEILSFGDQTVIGER 738
+V Q + + DNI FG K + RV E L +++ GD+
Sbjct: 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLEL---VQLEGLGDRY----- 127
Query: 739 GINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLR------SK 792
LSGGQ+QR+ +ARAL + + L D+PF A+DA ++ L LR
Sbjct: 128 PNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKV-----RKELRSWLRKLHDEVHV 182
Query: 793 TVIYVTH-QVEFLPAADLILVMKDGKITQAGKYNDILNSGTDFMVL 837
T ++VTH Q E + AD I+VM +GKI Q G +++ + + V+
Sbjct: 183 TTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDHPANPFVM 228
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 98.2 bits (245), Expect = 1e-21
Identities = 67/224 (29%), Positives = 105/224 (46%), Gaps = 40/224 (17%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-------------- 680
+ D +L V G + G GSGKS+L+ + + G + + G
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 681 ---TKAYVAQS----PWIQSGNIEDNILFGKPM----DREKYDRVLEACSLKKDLEILSF 729
+ V QS P + +N+ FG + E+ +R LEA L + + +
Sbjct: 104 RRKKISMVFQSFALLPHR---TVLENVAFGLEVQGVPKAEREERALEALEL---VGLEGY 157
Query: 730 GDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL 789
D+ E LSGG +QR+ +ARAL D DI L D+ FSA+D + + ++ LL L
Sbjct: 158 ADK-YPNE----LSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEM-QDELLELQ 211
Query: 790 RS--KTVIYVTHQV-EFLPAADLILVMKDGKITQAGKYNDILNS 830
KT++++TH + E L D I +MKDG+I Q G +IL +
Sbjct: 212 AKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLN 255
|
Length = 386 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 99.6 bits (249), Expect = 2e-21
Identities = 74/294 (25%), Positives = 129/294 (43%), Gaps = 39/294 (13%)
Query: 1032 ISSEPPLVIEESRPDCSWPTHGEVDIL---NLQVRYAP---------HLPLVLRGLTCTF 1079
+++ P L E+ +L NL RY + ++
Sbjct: 255 LAAVPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDL 314
Query: 1080 PGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDG--INISSIGLHDLRSRLSIIPQ 1137
G G+VG +GSGKSTL + L ++ P++G I+ DG ++++ L LR R+ ++ Q
Sbjct: 315 REGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQ 374
Query: 1138 DPTMF---EGTVRNNL-DPLEEYKDEEIWEALDK-CQLGDEVRNKEGKLDSRVTENGENW 1192
DP TV + L +PL + E + +L + V LD E
Sbjct: 375 DPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHE----L 430
Query: 1193 SMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATD----NLIQQTLRQHFSDCTVITIAH 1248
S GQRQ V + R L + K+L+LDE +++D + NL++ L++ T + I+H
Sbjct: 431 SGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKD-LQEEL-GLTYLFISH 488
Query: 1249 RITSVID--SDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLVAEYTQRSSSSLE 1300
+ +V+ +D V ++ G I E K+ EN YT++ +++
Sbjct: 489 DL-AVVRYIADRVAVMYDGRIVEEGPTEKVFENPQH-------PYTRKLLAAVP 534
|
Length = 539 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 95.0 bits (237), Expect = 2e-21
Identities = 63/234 (26%), Positives = 106/234 (45%), Gaps = 49/234 (20%)
Query: 630 SNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------- 682
+ L+D+NL++ G VA+ G G+GKS+LL + G V SG + G +
Sbjct: 15 GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGK 74
Query: 683 ---------AYVAQSP-WIQSGNIEDNILFGKP------------MDREKYDRVLEACSL 720
+ Q + ++ +N+L G+ +E + L+A L
Sbjct: 75 ELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDA--L 132
Query: 721 KKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHL 780
++ + IL Q R LSGGQ+QR+ IARAL Q I L D+P +++D +
Sbjct: 133 ER-VGILDKAYQ-----RASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESA--- 183
Query: 781 FKEVLLGLLR------SKTVIYVTHQVEF-LPAADLILVMKDGKITQAGKYNDI 827
+ ++ +L+ TVI HQV+ AD I+ +K G+I G +++
Sbjct: 184 --KKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASEL 235
|
Length = 258 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 101 bits (252), Expect = 2e-21
Identities = 53/158 (33%), Positives = 100/158 (63%), Gaps = 3/158 (1%)
Query: 1110 AGEIVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLD-PLEEYKDEEIWEALDKC 1168
+G+I++DG++I L DLR+ SI+ Q+P +F ++ N+ E+ E++ A
Sbjct: 1276 SGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFA 1335
Query: 1169 QLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDN 1228
+ + + + K D+ V G++ S GQ+Q + + R LL++ K+L+LDEAT+S+D+ ++
Sbjct: 1336 AIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEK 1395
Query: 1229 LIQQTLR--QHFSDCTVITIAHRITSVIDSDMVLLLSH 1264
LI++T+ + +D T+ITIAHRI S+ SD +++ ++
Sbjct: 1396 LIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNN 1433
|
Length = 1466 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 92.2 bits (230), Expect = 3e-21
Identities = 56/217 (25%), Positives = 93/217 (42%), Gaps = 46/217 (21%)
Query: 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIV 1114
+++ N+ RY VL ++ G ++G +GSGKSTL++ + + EP +G I+
Sbjct: 1 LELKNVSKRYGQKT--VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSIL 58
Query: 1115 IDGINISSIGLH--DLRSRLSIIPQDPTMFEG-TVRNNLDPLEEYKDEEIWEALDKCQLG 1171
IDG +++ + LR R+ ++ QD +F TV N I L
Sbjct: 59 IDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLEN-----------IALGL------ 101
Query: 1172 DEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQ 1231
S GQ+Q V L R L VL+LDE T+++D T ++
Sbjct: 102 ---------------------SGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVR 140
Query: 1232 QTLRQHF--SDCTVITIAHRITSVID-SDMVLLLSHG 1265
L+ TV+ + H + +D V++L G
Sbjct: 141 ALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 92.1 bits (230), Expect = 3e-21
Identities = 51/190 (26%), Positives = 89/190 (46%), Gaps = 30/190 (15%)
Query: 631 NNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPW 690
L DI+L V G + G G+GK++L+ ILG + SG +K+ G +
Sbjct: 12 KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLG------KDIK 65
Query: 691 IQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRI 750
+ ++ I + + E SL ++L TV + LSGG KQR+
Sbjct: 66 KEPEEVKRRIGY-----------LPEEPSLYENL--------TV--RENLKLSGGMKQRL 104
Query: 751 QIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRS-KTVIYVTHQVEFLPA-AD 808
+A+AL D ++ + D+P S +D + F E+L L + KT++ +H +E D
Sbjct: 105 ALAQALLHDPELLILDEPTSGLDPES-RREFWELLRELKKEGKTILLSSHILEEAERLCD 163
Query: 809 LILVMKDGKI 818
+ ++ +G+I
Sbjct: 164 RVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 94.3 bits (235), Expect = 5e-21
Identities = 50/269 (18%), Positives = 97/269 (36%), Gaps = 4/269 (1%)
Query: 307 ILALLYTLANYVGPYLIDTFVQYLNGE-REFKNEGYVLVSTFFVAKIVECLAQRHWMFRL 365
+L +L V P L+ F+ L + ++ L +++ L + +
Sbjct: 6 LLLILAGATALVFPLLLGRFLDSLIDGNGDERSSLISLAILLIAVGVLQGLLLQGSFYLG 65
Query: 366 QVAGIKMRSVLVSMVYNKGLTLSCQAKQSYTSGEIINFMTVDAERIGDFGWYMHDPWLVI 425
+ G ++R L + + L L + + GE+ + +T D +I D +
Sbjct: 66 ERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGDKLGLFFQS 125
Query: 426 LQVSLALLILYKNLG-LASIAALFATVLIMLTNFPLGRLQENFQDKLMGSKDKRMKVTSE 484
L + I+ G ++ L L++L + L + K + K V E
Sbjct: 126 LATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKAYAKAGSVAEE 185
Query: 485 ILRNMRILKLQGWEMKFLSKI-IELRKIEAGWLKKFLYTGAMTSFVFWGAPT-FVSVATF 542
L +R +K G E L + L E +KK + G + + F
Sbjct: 186 SLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGITQLISYLSYALALWF 245
Query: 543 GACMLLGIPLESGKILSALATFRILQEPI 571
GA +++ L G + + L+ L P+
Sbjct: 246 GAYLVISGGLSVGTVFAFLSLGLQLSGPL 274
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 93.1 bits (232), Expect = 7e-21
Identities = 63/241 (26%), Positives = 118/241 (48%), Gaps = 25/241 (10%)
Query: 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVE-----PT 1109
++I NL + Y L+ + P T ++G +G GKSTL+++L R+ +
Sbjct: 2 IEIENLNLFYGEKE--ALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRI 59
Query: 1110 AGEIVIDGINISS--IGLHDLRSRLSIIPQDPTMFEGTVRNN------LDPLEEYK--DE 1159
G+++ DG +I I + +LR R+ ++ Q P F ++ +N L +++ K DE
Sbjct: 60 EGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDE 119
Query: 1160 EIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEAT 1219
+ E+L K L DEV+ R+ ++ S GQ+Q +C+ R L + +VL+LDE T
Sbjct: 120 IVEESLKKAALWDEVK-------DRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPT 172
Query: 1220 ASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLE 1278
+++D I++ +++ T++ + H + SD G + EY ++
Sbjct: 173 SALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFT 232
Query: 1279 N 1279
N
Sbjct: 233 N 233
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 92.6 bits (231), Expect = 1e-20
Identities = 58/217 (26%), Positives = 102/217 (47%), Gaps = 42/217 (19%)
Query: 1059 NLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGI 1118
NL Y P+ L+ ++ + G ++G +G+GKSTL++ L +VEPT+G ++IDG
Sbjct: 5 NLSKTY-PNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGT 63
Query: 1119 NISSIG---LHDLRSRLSIIPQDPTMFE----------------GTVRN--NLDPLEEYK 1157
+I+ + L LR ++ +I Q + E T R+ L P EE
Sbjct: 64 DINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEK- 122
Query: 1158 DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDE 1217
+ AL++ L D+ + +L S GQ+Q V + R L+++ K+++ DE
Sbjct: 123 -QRALAALERVGLLDKAYQRADQL-----------SGGQQQRVAIARALMQQPKLILADE 170
Query: 1218 ATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVI 1254
AS+D A+ + L++ I IT ++
Sbjct: 171 PVASLDPASSRQVMDLLKR-------INREEGITVIV 200
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 93.1 bits (232), Expect = 1e-20
Identities = 67/227 (29%), Positives = 100/227 (44%), Gaps = 46/227 (20%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------------ 682
+ D++L V G + G GSGKS+LL CI + SG + + G
Sbjct: 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELREL 99
Query: 683 -----AYVAQS----PWIQSGNIEDNILFG-------KPMDREKYDRVLEACSLKKDLEI 726
+ V QS P + +N+ FG + E+ LE L+
Sbjct: 100 RRKKISMVFQSFALLP---HRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHK 156
Query: 727 LSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLL 786
E LSGG +QR+ +ARAL D DI L D+ FSA+D + ++ LL
Sbjct: 157 Y-------PDE----LSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREM-QDELL 204
Query: 787 GLLRS--KTVIYVTHQV-EFLPAADLILVMKDGKITQAGKYNDILNS 830
L KT++++TH + E L D I +MKDG++ Q G +IL +
Sbjct: 205 RLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 91.9 bits (228), Expect = 2e-20
Identities = 73/242 (30%), Positives = 121/242 (50%), Gaps = 36/242 (14%)
Query: 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVE--PTA-- 1110
++I +L+V + VL G+ P T ++G +GSGKSTL++ R++E P A
Sbjct: 4 IEIRDLKVSFGQ--VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARV 61
Query: 1111 -GEIVIDGINISSIGLHDLRSRLSIIPQDP------TMFE----GTVRNNLDPLEEYKDE 1159
GE+ +DG +I + + +LR R+ ++ Q P ++FE G N L ++ E
Sbjct: 62 SGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQE 121
Query: 1160 EIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEAT 1219
+ AL+K QL DEV+++ ++ S GQ+Q +C+ R L + +VL+ DE T
Sbjct: 122 RVRWALEKAQLWDEVKDRLDAPAGKL-------SGGQQQRLCIARALAFQPEVLLADEPT 174
Query: 1220 ASVDTATDNLIQQTLRQHFSDCTVITIAH------RITSVIDSDMVLLLSHGIIEEYDSP 1273
A++D I+ + D T++ + H RI SD V L G I E+ P
Sbjct: 175 ANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARI-----SDYVAFLYKGQIVEW-GP 228
Query: 1274 TK 1275
T+
Sbjct: 229 TR 230
|
Length = 250 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 2e-20
Identities = 68/256 (26%), Positives = 116/256 (45%), Gaps = 37/256 (14%)
Query: 1055 VDILNLQVRYAPH--LPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGE 1112
+ + NL + Y L ++ G GIVG +GSGKSTL + L + +P++G
Sbjct: 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGS 63
Query: 1113 IVIDGINISSIGLHDLRSR-LSIIPQDP--------TMFEGTVRNNLDPLEEYKDE-EIW 1162
I++DG ++ R + ++ QDP T+ + L P K + I
Sbjct: 64 ILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGR-ILSEPLRPHGLSKSQQRIA 122
Query: 1163 EALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASV 1222
E LD+ L LD R E S GQRQ + + R L+ + K+L+LDE T+++
Sbjct: 123 ELLDQVGLPPSF------LDRRPHE----LSGGQRQRIAIARALIPEPKLLILDEPTSAL 172
Query: 1223 DTATDNLIQ---QTLRQHFSDCTVITIAHRITSVID--SDMVLLLSHGIIEEYDSPTKLL 1277
D + I L++ T + I+H + ++++ D + ++ +G I E PT+ L
Sbjct: 173 DVSVQAQILNLLLELKKER-GLTYLFISHDL-ALVEHMCDRIAVMDNGQIVE-IGPTEEL 229
Query: 1278 ENKSSSFAQLVAEYTQ 1293
+ S YT+
Sbjct: 230 LSHPS------HPYTR 239
|
Length = 252 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 91.3 bits (227), Expect = 2e-20
Identities = 68/220 (30%), Positives = 100/220 (45%), Gaps = 44/220 (20%)
Query: 637 DINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTLKLCG---TKAYVAQSP--- 689
+L V G VA+ G G+GKS+LL+ I G E P SG + + G T + A+ P
Sbjct: 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPA-SGEILINGVDHTASPPAERPVSM 75
Query: 690 WIQSGN------IEDNILFG-KP------MDREKYDRVLEACSLKKDLEILSFGDQTVIG 736
Q N + NI G P REK + L L+ L G
Sbjct: 76 LFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLP-------G 128
Query: 737 ERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL------R 790
E LSGGQ+QR+ +AR L ++ I L D+PFSA+D + +L L+ R
Sbjct: 129 E----LSGGQRQRVALARCLVREQPILLLDEPFSALDP-----ALRAEMLALVSQLCDER 179
Query: 791 SKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDILN 829
T++ VTH E AD ++ + +G+I G ++L+
Sbjct: 180 KMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLS 219
|
Length = 231 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 91.7 bits (228), Expect = 2e-20
Identities = 64/213 (30%), Positives = 101/213 (47%), Gaps = 39/213 (18%)
Query: 633 PTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--------TKAY 684
L D++L + G V V G G GK++LL+ I G V G+++L G +
Sbjct: 19 SALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGV 78
Query: 685 VAQS----PWIQSGNIEDNILFG-------KPMDREKYDRVLEACSLKKDLEILSFGDQT 733
V Q+ PW+ N+ DN+ FG K RE ++L L+ +
Sbjct: 79 VFQNEALLPWL---NVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEG------AEHKY 129
Query: 734 VIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL--LRS 791
+ LSGG +QR+ IARAL + + L D+PF A+DA T + +E+LL L
Sbjct: 130 IW-----QLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQM-QELLLDLWQETG 183
Query: 792 KTVIYVTHQV-EFLPAADLILVMK--DGKITQA 821
K V+ +TH + E L A ++V+ G++ +
Sbjct: 184 KQVLLITHDIEEALFLATRLVVLSPGPGRVVER 216
|
Length = 259 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 88.6 bits (221), Expect = 4e-20
Identities = 47/192 (24%), Positives = 83/192 (43%), Gaps = 53/192 (27%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSG 694
L ++L V G A+ G G+GKS+L+ + G SG + + G +
Sbjct: 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKE------------ 63
Query: 695 NIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGIN----LSGGQKQRI 750
+ F P D + GI LS G++Q +
Sbjct: 64 -----VSFASPRDARR---------------------------AGIAMVYQLSVGERQMV 91
Query: 751 QIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRS--KTVIYVTHQV-EFLPAA 807
+IARAL ++A + + D+P +A+ LFK ++ LR+ VI+++H++ E A
Sbjct: 92 EIARALARNARLLILDEPTAALTPAEVERLFK--VIRRLRAQGVAVIFISHRLDEVFEIA 149
Query: 808 DLILVMKDGKIT 819
D + V++DG++
Sbjct: 150 DRVTVLRDGRVV 161
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 89.9 bits (224), Expect = 6e-20
Identities = 64/222 (28%), Positives = 108/222 (48%), Gaps = 28/222 (12%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINI---SSIGLHD 1127
VL+G+ G I+G +GSGKSTL++ + ++ P +GE++IDG +I S L+
Sbjct: 15 VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYR 74
Query: 1128 LRSRLSIIPQDPTMFEG-TVRNNLD-PLEEYKDEEIWEALDKCQLGDEVRNK------EG 1179
LR R+ ++ Q +F+ TV N+ PL E+ L + ++ + V K G
Sbjct: 75 LRRRMGMLFQSGALFDSLTVFENVAFPLREH------TRLSEEEIREIVLEKLEAVGLRG 128
Query: 1180 KLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVD----TATDNLIQQTLR 1235
D E S G ++ V L R L ++L+ DE TA +D D+LI ++L+
Sbjct: 129 AEDLYPAE----LSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLI-RSLK 183
Query: 1236 QHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKL 1276
+ T I + H + + +D + +L G I +P +L
Sbjct: 184 KEL-GLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEEL 224
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 89.1 bits (222), Expect = 8e-20
Identities = 56/224 (25%), Positives = 104/224 (46%), Gaps = 18/224 (8%)
Query: 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIV 1114
+++ L Y L L+ T G ++G +G GK+TL++ + + P +GEI+
Sbjct: 1 LELKGLSKTYGSVR--ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEIL 58
Query: 1115 IDGINISSIGLHDLRSRLSIIPQDPTMFEG-TVRNNLD-PLEEYK--DEEIWEALDKCQL 1170
IDG +++ + R + ++ QD +F TV N+ L+ EI + +L
Sbjct: 59 IDGRDVTGVPPE--RRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVR--EL 114
Query: 1171 GDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLI 1230
+ V EG L+ E S GQ+Q V L R L ++ +L+LDE +++D +
Sbjct: 115 LELVGL-EGLLNRYPHE----LSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREEL 169
Query: 1231 QQTLR--QHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYD 1271
++ L+ Q T I + H + +D + +++ G I +
Sbjct: 170 REELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 92.5 bits (230), Expect = 1e-19
Identities = 73/247 (29%), Positives = 108/247 (43%), Gaps = 49/247 (19%)
Query: 637 DINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYV----------- 685
+ +L + G + G GSGKS+LL + G P G++ + V
Sbjct: 42 NASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATLR 101
Query: 686 --------------AQSPWIQSGNIEDNILFGKPM----DREKYDRVLEACSLKKDLEIL 727
A PW +E+N+ FG M E+ RV E LE++
Sbjct: 102 RLRTHRVSMVFQQFALLPWR---TVEENVAFGLEMQGMPKAERRKRVDE------QLELV 152
Query: 728 SFGD--QTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL 785
GE LSGG +QR+ +ARA +A I L D+PFSA+D + L E L
Sbjct: 153 GLAQWADRKPGE----LSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDE-L 207
Query: 786 LGLLR--SKTVIYVTHQV-EFLPAADLILVMKDGKITQAGKYNDI-LNSGTDFMVLVGAH 841
L L KT+++V+H + E L + I +M+ G+I Q G +I LN D++ AH
Sbjct: 208 LELQSKLKKTIVFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYVADFVAH 267
Query: 842 QQALSAL 848
L+ L
Sbjct: 268 TNPLNVL 274
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 93.2 bits (232), Expect = 2e-19
Identities = 64/234 (27%), Positives = 112/234 (47%), Gaps = 25/234 (10%)
Query: 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCIL-------GE 668
A+ ++ +FA+D P L I+ + G VA+ G G+GKS++L + G
Sbjct: 262 AVAFINVSFAYD--PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGS 319
Query: 669 V---------PKISGTLKLCGTKAYVAQSPWIQSGNIEDNILFGKPM--DREKYDRVLEA 717
+ + G V Q + + I NI +G+P E EA
Sbjct: 320 ITIDGQDIRDVTQQSLRRAIGI---VPQDTVLFNDTIAYNIKYGRPDATAEEVG-AAAEA 375
Query: 718 CSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTG 777
+ ++ L G T +GERG+ LSGG+KQR+ IAR + ++ I + D+ SA+D HT
Sbjct: 376 AQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHT- 434
Query: 778 SHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSG 831
+ L + +T + + H++ + AD I+V+ +G+I + G + ++L +G
Sbjct: 435 EQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAAG 488
|
Length = 497 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 93.8 bits (233), Expect = 2e-19
Identities = 61/238 (25%), Positives = 120/238 (50%), Gaps = 19/238 (7%)
Query: 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGT 675
A+E F + ++++ + D++ + G VA+ G G+GK++L++ + G
Sbjct: 334 AVEFRHITF--EFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQ 391
Query: 676 LKLCGTK-------------AYVAQSPWIQSGNIEDNILFGK--PMDREKYDRVLEACSL 720
+ + G A V Q + + +I +NI G+ D E Y+ +A +
Sbjct: 392 ILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAA-KAAAA 450
Query: 721 KKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHL 780
+ S G T++GERG LSGG++QR+ IARA+ ++A I + D+ SA+D T + +
Sbjct: 451 HDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARV 510
Query: 781 FKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSGTDFMVLV 838
K + L +++T + H++ + ADL+L + G++ + G + +++ F L+
Sbjct: 511 -KNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKDGRFYKLL 567
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 95.1 bits (236), Expect = 2e-19
Identities = 66/256 (25%), Positives = 119/256 (46%), Gaps = 63/256 (24%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVI-DGINISSIGLHDLR 1129
+ + L T G VG +G GKST+++ + R+ +PT G+I+I D N+ I L R
Sbjct: 400 IYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWR 459
Query: 1130 SRLSIIPQDPTMFEGTVRNN----------LDPLEEY----------------------- 1156
S++ ++ QDP +F +++NN L+ L Y
Sbjct: 460 SKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCA 519
Query: 1157 -------------------------KDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGEN 1191
KD E+ + K + D V K ++ V N
Sbjct: 520 GDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASK 579
Query: 1192 WSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQT---LRQHFSDCTVITIAH 1248
S GQ+Q + + R +++ K+L+LDEAT+S+D ++ L+Q+T L+ + + T+I IAH
Sbjct: 580 LSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITII-IAH 638
Query: 1249 RITSVIDSDMVLLLSH 1264
R++++ ++ + +LS+
Sbjct: 639 RLSTIRYANTIFVLSN 654
|
Length = 1466 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 89.2 bits (222), Expect = 2e-19
Identities = 63/233 (27%), Positives = 100/233 (42%), Gaps = 49/233 (21%)
Query: 631 NNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK-------- 682
+ L ++L V G +A+ G GSGKS+LL ILG + G + + G
Sbjct: 20 DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEE 79
Query: 683 AYVAQSPW---IQSG------NIEDNILFGKPM-------DREKYDRV---LEACSLKKD 723
Y + Q G + +N+ F P+ + + V LE L+
Sbjct: 80 LYEIRKRMGVLFQQGALFSSLTVFENVAF--PLREHTKLPESLIRELVLMKLELVGLRGA 137
Query: 724 LEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTG---SHL 780
L + + LSGG ++R+ +ARA+ D ++ D+P S +D + L
Sbjct: 138 AADL-YPSE---------LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDEL 187
Query: 781 FKEVL--LGLLRSKTVIYVTHQV-EFLPAADLILVMKDGKITQAGKYNDILNS 830
+E+ LGL TVI VTH + L AD + V+ DGK+ G ++L S
Sbjct: 188 IRELNDALGL----TVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLAS 236
|
Length = 263 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.3 bits (220), Expect = 3e-19
Identities = 69/230 (30%), Positives = 104/230 (45%), Gaps = 55/230 (23%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTLKLCGTKAY--------- 684
L+ I+L V G V + G GSGKS+LL C+ G E P SG++ + G
Sbjct: 18 LKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD-SGSITVDGEDVGDKKDILKLR 76
Query: 685 -----VAQSPWIQSGN------IEDNILFG----KPMDREKYDRVLEACSLKKDLEILSF 729
V Q N + +N+ K + + EA +K LE+L
Sbjct: 77 RKVGMVFQQF-----NLFPHLTVLENVTLAPVKVKKLSKA------EA--REKALELL-- 121
Query: 730 GDQTVIGERG----INLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL 785
++ + ++ LSGGQ+QR+ IARAL D + LFD+P SA+D L EVL
Sbjct: 122 -EKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALD----PELVGEVL 176
Query: 786 LGLLRSK----TVIYVTHQVEF-LPAADLILVMKDGKITQAGKYNDILNS 830
+ T+I VTH++ F AD ++ M GKI + G + ++
Sbjct: 177 DVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDN 226
|
Length = 240 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 3e-19
Identities = 72/224 (32%), Positives = 109/224 (48%), Gaps = 29/224 (12%)
Query: 633 PTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTLKLCGTKA-------- 683
L D++L + G VA+ G GSGK++LL I G E P SGT+ G A
Sbjct: 16 VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD-SGTILFGGEDATDVPVQER 74
Query: 684 ---YVAQS-PWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERG 739
+V Q + + DN+ FG + + + +R EA K E+L + +R
Sbjct: 75 NVGFVFQHYALFRHMTVFDNVAFGLRV-KPRSERPPEAEIRAKVHELLKLVQLDWLADRY 133
Query: 740 IN-LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLR------SK 792
LSGGQ+QR+ +ARAL + + L D+PF A+DA ++ L LR
Sbjct: 134 PAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKV-----RKELRRWLRRLHDELHV 188
Query: 793 TVIYVTH-QVEFLPAADLILVMKDGKITQAGKYNDILNS-GTDF 834
T ++VTH Q E L AD ++VM G+I Q G +++ + + F
Sbjct: 189 TTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDHPASPF 232
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 87.6 bits (218), Expect = 4e-19
Identities = 67/240 (27%), Positives = 106/240 (44%), Gaps = 39/240 (16%)
Query: 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 676
IE+ ++ L+ ++L V G +A+ G GSGKS+LL I+G + SG +
Sbjct: 1 IELRGLTKSFG---GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEV 57
Query: 677 KLCGTKAYVAQSPWI-----------QSG------NIEDNILFGKPMDREKYDRVLEACS 719
+ G + QSG + +N+ F P+ RE E
Sbjct: 58 LIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAF--PL-REHTRLSEEEIR 114
Query: 720 LKKDLEILSFGDQTVIGERGI------NLSGGQKQRIQIARALYQDADIYLFDDPFSAVD 773
+ LE L +G RG LSGG K+R+ +ARAL D ++ L+D+P + +D
Sbjct: 115 -EIVLEKLEA-----VGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLD 168
Query: 774 AHTGSHLFKEVLLGLLRSK--TVIYVTHQVEF-LPAADLILVMKDGKITQAGKYNDILNS 830
S + +++ L + T I VTH ++ AD I V+ DGKI G ++ S
Sbjct: 169 PIA-SGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRAS 227
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 87.4 bits (217), Expect = 5e-19
Identities = 65/242 (26%), Positives = 112/242 (46%), Gaps = 25/242 (10%)
Query: 1066 PHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGL 1125
+ L G ++G +GSGK+T ++ + R++EPT+GEI IDG +I
Sbjct: 11 GGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDP 70
Query: 1126 HDLRSRLSIIPQDPTMF-EGTVRNN--LDP-LEEYKDEEIWEALDKCQLGDEVRNKEGKL 1181
+LR ++ + Q +F TV N L P L ++ E+I E D +L V +
Sbjct: 71 VELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERAD--ELLALVGLDPAEF 128
Query: 1182 DSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTAT-DNL------IQQTL 1234
R S GQ+Q V + R L +L++DE ++D T D L +QQ L
Sbjct: 129 ADRYP---HELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQEL 185
Query: 1235 RQHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLVAEYTQ 1293
+ T++ + H I +D + ++ +G I + +P ++L + ++ F VAE+
Sbjct: 186 GK-----TIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSPANDF---VAEFVG 237
Query: 1294 RS 1295
Sbjct: 238 AD 239
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 86.8 bits (215), Expect = 5e-19
Identities = 54/208 (25%), Positives = 96/208 (46%), Gaps = 22/208 (10%)
Query: 627 DISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK---- 682
++ + L +I+L V G +A+ G G GKS+LL + + SGTL G
Sbjct: 11 YLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTL 70
Query: 683 ---------AYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQT 733
+Y AQ+P + +EDN++F + + DR A L + +
Sbjct: 71 KPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAA-ALDLLARFAL----PDS 125
Query: 734 VIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSK- 792
++ + LSGG+KQRI + R L I L D+ SA+D +E++ +R +
Sbjct: 126 ILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESN-KRNIEEMIHRYVREQN 184
Query: 793 -TVIYVTH-QVEFLPAADLILVMKDGKI 818
V+++TH + + + AD ++ ++ G
Sbjct: 185 VAVLWITHDKDQAIRHADKVITLQPGHA 212
|
Length = 223 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 5e-19
Identities = 61/242 (25%), Positives = 104/242 (42%), Gaps = 30/242 (12%)
Query: 606 EKHPRGSSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCI 665
++HP +E IE+ + + + L D++ +V G A+ G G+GK++LLS +
Sbjct: 21 KRHPIEINEPLIELKNVSVRRN---GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLL 77
Query: 666 LGEVPKISGTLKLCGTK--------------AYVAQSPWIQ-----SGNIEDNILFGKPM 706
GE P SG + L G + V S + + D +L G
Sbjct: 78 TGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLV--SSELHERFRVRETVRDVVLSGFFA 135
Query: 707 DREKYDRVLEACSLKKDLEIL-SFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLF 765
Y L A L +L G + + +LS G+++R+ IARAL +D ++ +
Sbjct: 136 SIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLIL 195
Query: 766 DDPFSAVDAHTGSHLFKEVLLGLLRSK---TVIYVTHQVEFLPA-ADLILVMKDGKITQA 821
D+P +D L L S +++VTH E +P L++K+G++
Sbjct: 196 DEPAQGLDLI-AREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQ 254
Query: 822 GK 823
GK
Sbjct: 255 GK 256
|
Length = 257 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 90.1 bits (223), Expect = 6e-19
Identities = 63/211 (29%), Positives = 105/211 (49%), Gaps = 27/211 (12%)
Query: 632 NPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK--ISGTLKLCGTKAYVAQSP 689
N L D++L++ G +A+ G G GK++LL I G V ++G + + + +P
Sbjct: 18 NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRD--LTHAP 75
Query: 690 WIQSG--------------NIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVI 735
+ G +EDN+ FG + +K + A + L+++ GD
Sbjct: 76 PHKRGLALLFQNYALFPHLKVEDNVAFG--LRAQKMPKADIAERVADALKLVGLGDA--- 130
Query: 736 GER-GINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEV--LLGLLRSK 792
LSGG +QRI IARA+ + D+ L D+P SA+DA+ +++ +E+ L L
Sbjct: 131 AAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPEL 190
Query: 793 TVIYVTH-QVEFLPAADLILVMKDGKITQAG 822
T++ VTH Q + L AD +MKDG++ G
Sbjct: 191 TILCVTHDQDDALTLADKAGIMKDGRLAAHG 221
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 87.6 bits (217), Expect = 6e-19
Identities = 70/243 (28%), Positives = 119/243 (48%), Gaps = 27/243 (11%)
Query: 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVE--PTA-- 1110
++ +NL+V Y + V++G+ P ++G +G GKSTL++T R++E A
Sbjct: 5 IETVNLRVYYGSNH--VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARV 62
Query: 1111 -GEIVIDGINISSIGLH--DLRSRLSIIPQDP------TMFE----GTVRNNLDPLEEYK 1157
GE+ + G NI S + ++R + ++ Q P T+++ G N L ++
Sbjct: 63 EGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKEL 122
Query: 1158 DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDE 1217
DE + AL K L DEV++ R+ + N S GQRQ + + R L K K+L++DE
Sbjct: 123 DERVEWALKKAALWDEVKD-------RLNDYPSNLSGGQRQRLVIARALAMKPKILLMDE 175
Query: 1218 ATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKL 1276
TA++D I++ L + + T++ + H SD V L G + E K+
Sbjct: 176 PTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKV 235
Query: 1277 LEN 1279
EN
Sbjct: 236 FEN 238
|
Length = 253 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 6e-19
Identities = 64/225 (28%), Positives = 108/225 (48%), Gaps = 29/225 (12%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSI---GLHD 1127
L+ ++ + P G GI+GR+G+GKSTLI+ + + PT+G +++DG +++ + L
Sbjct: 20 ALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRK 79
Query: 1128 LRSRLSIIPQDPTMFEG-TVRNNLD-PLE------EYKDEEIWEALDKCQLGDEVRNKEG 1179
R R+ +I Q + TV N+ PLE +E + E L+ L D+
Sbjct: 80 ARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPA 139
Query: 1180 KLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLR---Q 1236
+L S GQ+Q V + R L KVL+ DEAT+++D T I LR +
Sbjct: 140 QL-----------SGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINR 188
Query: 1237 HFSDCTVITIAHRITSVIDS--DMVLLLSHGIIEEYDSPTKLLEN 1279
T++ I H + V+ D V ++ G + E + ++ N
Sbjct: 189 EL-GLTIVLITHEM-EVVKRICDRVAVMEKGEVVEEGTVEEVFAN 231
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.2 bits (222), Expect = 7e-19
Identities = 65/262 (24%), Positives = 119/262 (45%), Gaps = 55/262 (20%)
Query: 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEI 1113
E+++ N++ + VL+ + G ++G +G GKSTL++ + + EPT+GEI
Sbjct: 3 ELELKNVRKSFGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEI 60
Query: 1114 VIDGINISSIGLHDLRSRLSIIPQD----PTMFEGTVRNNLD-PLEEYK------DEEIW 1162
+IDG +++ L + ++++ Q+ P M TV N+ L+ D+ +
Sbjct: 61 LIDGRDVTD--LPPEKRGIAMVFQNYALYPHM---TVYENIAFGLKLRGVPKAEIDKRVK 115
Query: 1163 EALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASV 1222
E L + K +L S GQRQ V L R L++K KV +LDE +++
Sbjct: 116 EVAKLLGLEHLLNRKPLQL-----------SGGQRQRVALARALVRKPKVFLLDEPLSNL 164
Query: 1223 DTATDNLIQQTLRQHFSDCTVITIAHR---ITSVI---D-------SDMVLLLSHGIIEE 1269
D LR + I H T++ D +D +++++ G I++
Sbjct: 165 DAK--------LRVLMR--SEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQ 214
Query: 1270 YDSPTKLLENKSSSFAQLVAEY 1291
+P +L E ++ F VA +
Sbjct: 215 VGTPLELYERPANLF---VAGF 233
|
Length = 338 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 9e-19
Identities = 59/200 (29%), Positives = 94/200 (47%), Gaps = 28/200 (14%)
Query: 1059 NLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGI 1118
NL +R L L L G + I G +G+GK++L++ L + +G I +
Sbjct: 397 NLSLRTPDGQTL-LSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA- 454
Query: 1119 NISSIGLHDLRSRLSIIPQDPTMFEGTVRNNL---DPLEEYKDEEIWEALDKCQLGDEVR 1175
S L +PQ P + +GT+R L + ++ D E+ L K LGD
Sbjct: 455 ----------DSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGD--- 501
Query: 1176 NKEGKLDSRVTENGENWSM----GQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQ 1231
L R+ E W G++Q + R+LL K K + LDEAT+++D T++ +
Sbjct: 502 -----LAERLDEED-RWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLY 555
Query: 1232 QTLRQHFSDCTVITIAHRIT 1251
Q L++ D TVI++ HR T
Sbjct: 556 QLLKEELPDATVISVGHRPT 575
|
Length = 604 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 86.0 bits (214), Expect = 1e-18
Identities = 59/215 (27%), Positives = 94/215 (43%), Gaps = 36/215 (16%)
Query: 632 NPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK--------- 682
L D++ + G + + G GSGKS+L ILG + SG++ G
Sbjct: 18 VKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLR 77
Query: 683 -------AYVAQSPWIQSGN----IEDNILFGKPMDREKYDRVLEACSLKKDLEILSFG- 730
V Q P + S N I + I +P+ EA L ++ G
Sbjct: 78 KIRRKEIQMVFQDP-MSSLNPRMTIGEQIA--EPLRIHGKLSKKEARKEAVLLLLVGVGL 134
Query: 731 DQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGS---HLFKEVLLG 787
+ V+ LSGGQ+QR+ IARAL + + + D+P SA+D + L K+
Sbjct: 135 PEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKK---- 190
Query: 788 LLRSK---TVIYVTHQVEFLPA-ADLILVMKDGKI 818
L+ + T++++TH + + AD + VM GKI
Sbjct: 191 -LQEELGLTLLFITHDLGVVAKIADRVAVMYAGKI 224
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 85.4 bits (212), Expect = 1e-18
Identities = 67/220 (30%), Positives = 96/220 (43%), Gaps = 47/220 (21%)
Query: 635 LRDINLKV---FHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK--------- 682
L D LK+ + + G G+GKS+LL CI G GT+ L GT
Sbjct: 10 LPDFTLKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKIN 69
Query: 683 --------AYVAQS----PWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEIL-SF 729
V Q P + N+ +N+ FG R + DR+ E+L
Sbjct: 70 LPPQQRKIGLVFQQYALFPHL---NVRENLAFGLKRKRNREDRISVD-------ELLDLL 119
Query: 730 GDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL 789
G ++ LSGG+KQR+ +ARAL ++ L D+PFSA+D + LL L
Sbjct: 120 GLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRAL-----RLQLLPEL 174
Query: 790 RSK------TVIYVTHQ-VEFLPAADLILVMKDGKITQAG 822
+ VI+VTH E AD I+VM+DG++ G
Sbjct: 175 KQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 85.0 bits (211), Expect = 1e-18
Identities = 58/202 (28%), Positives = 100/202 (49%), Gaps = 27/202 (13%)
Query: 634 TLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKA---------- 683
L D++L ++ G +A+ G G+GK++L + G + + SG++ L G
Sbjct: 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIG 74
Query: 684 YVAQSPWIQ--SGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGIN 741
YV Q Q + ++ + +L G E +A ++ KDL++ + ++ ++
Sbjct: 75 YVMQDVDYQLFTDSVREELLLGLK---ELDAGNEQAETVLKDLDLYALKER-----HPLS 126
Query: 742 LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTG---SHLFKEVLLGLLRSKTVIYVT 798
LSGGQKQR+ IA AL D+ +FD+P S +D L +E+ + K VI +T
Sbjct: 127 LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIREL---AAQGKAVIVIT 183
Query: 799 HQVEFLP-AADLILVMKDGKIT 819
H EFL D +L++ +G I
Sbjct: 184 HDYEFLAKVCDRVLLLANGAIV 205
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 85.3 bits (212), Expect = 2e-18
Identities = 59/216 (27%), Positives = 102/216 (47%), Gaps = 30/216 (13%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDL-- 1128
L+ + G IVG +GSGKSTL+ L + +PT+GE++I+G +++ + +L
Sbjct: 20 ALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAK 79
Query: 1129 --RSRLSIIPQD----PTMFEGTVRNNLD-PLE------EYKDEEIWEALDKCQLGDEVR 1175
R ++ + Q+ P + TV N++ PL + E L+ L D +
Sbjct: 80 LRRKKIGFVFQNFNLLPDL---TVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLL 136
Query: 1176 NKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLR 1235
K + +E S GQ+Q V + R L+ K+++ DE T ++D+ T + + LR
Sbjct: 137 KK------KPSE----LSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLR 186
Query: 1236 Q--HFSDCTVITIAHRITSVIDSDMVLLLSHGIIEE 1269
+ T+I + H +D V+ L G IEE
Sbjct: 187 ELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222
|
Length = 226 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 2e-18
Identities = 60/229 (26%), Positives = 101/229 (44%), Gaps = 42/229 (18%)
Query: 632 NPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKA-------- 683
L +++L++ G + + G GSGKS+L + G SG++ L G
Sbjct: 20 FHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKA 79
Query: 684 ------YVAQSPWIQSGN----IEDNILFGKPMDREKYDRVLEACSLKKDLEIL-SFGDQ 732
V Q P S N + + +P+ + S ++ E+L G
Sbjct: 80 FYRPVQMVFQDP-YSSLNPRRTVGRIL--SEPLRPHGLSK-----SQQRIAELLDQVGLP 131
Query: 733 TVIGERGIN-LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-- 789
+R + LSGGQ+QRI IARAL + + + D+P SA+D ++L LL
Sbjct: 132 PSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQ----AQILNLLLEL 187
Query: 790 ---RSKTVIYVTHQ---VEFLPAADLILVMKDGKITQAGKYNDILNSGT 832
R T ++++H VE + D I VM +G+I + G ++L+ +
Sbjct: 188 KKERGLTYLFISHDLALVEHM--CDRIAVMDNGQIVEIGPTEELLSHPS 234
|
Length = 252 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.9 bits (224), Expect = 2e-18
Identities = 58/210 (27%), Positives = 99/210 (47%), Gaps = 36/210 (17%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPW--IQ 692
L ++L V G A+ G G+GKS+L+ + G P SG + + G K SP +
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDG-KPVAFSSPRDALA 82
Query: 693 SG--------------NIEDNILFG-------KPMDREKYDRVLEACSLKKDLEILSFGD 731
+G ++ +NI G +DR+ R A L L + D
Sbjct: 83 AGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRR--RARELLARLGLDIDPD 140
Query: 732 QTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRS 791
V +LS Q+Q ++IARAL DA + + D+P +A+ LF L+ L++
Sbjct: 141 TLVG-----DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFD--LIRRLKA 193
Query: 792 K--TVIYVTHQVEFLPA-ADLILVMKDGKI 818
+ +IY++H+++ + AD I V++DG++
Sbjct: 194 QGVAIIYISHRLDEVFEIADRITVLRDGRV 223
|
Length = 500 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 85.2 bits (212), Expect = 2e-18
Identities = 46/211 (21%), Positives = 91/211 (43%), Gaps = 33/211 (15%)
Query: 629 SSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQS 688
P + D++L V+ G + G G+GK++ L + GE+ SGT + G +
Sbjct: 12 KGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGY--SIRTD 69
Query: 689 PWIQSGNI----EDNILFGK--PMD------------REKYDRVLEACSLKKDLEILSFG 730
++ + + LF + + + + +E L + L +
Sbjct: 70 RKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVEL--LLRVLGLTDKA 127
Query: 731 DQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLR 790
++ LSGG K+++ +A AL + L D+P S +D + ++ +++L + +
Sbjct: 128 NKRA-----RTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIW-DLILEVRK 181
Query: 791 SKTVIYVTHQ---VEFLPAADLILVMKDGKI 818
+++I TH E L D I +M DGK+
Sbjct: 182 GRSIILTTHSMDEAEAL--CDRIAIMSDGKL 210
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 84.9 bits (211), Expect = 2e-18
Identities = 59/232 (25%), Positives = 96/232 (41%), Gaps = 23/232 (9%)
Query: 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIV 1114
+ I NL Y + L+ G G++G G+GK+T ++ L + PT+G
Sbjct: 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY 60
Query: 1115 IDGINISSIGLHDLRSRLSIIPQDPTMFEG-TVRNNLD--------PLEEYKDEEIWEAL 1165
I+G +I + R L PQ +F+ TVR +L P E K EE+ L
Sbjct: 61 INGYSIRT-DRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIK-EEVELLL 118
Query: 1166 DKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTA 1225
L D K + R S G ++ + L L+ VL+LDE T+ +D A
Sbjct: 119 RVLGLTD-------KANKRAR----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPA 167
Query: 1226 TDNLIQQTLRQHFSDCTVITIAHRITSV-IDSDMVLLLSHGIIEEYDSPTKL 1276
+ I + + ++I H + D + ++S G + SP +L
Sbjct: 168 SRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 84.9 bits (210), Expect = 2e-18
Identities = 62/206 (30%), Positives = 100/206 (48%), Gaps = 32/206 (15%)
Query: 639 NLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQ--SGNI 696
+L V G VA+ G G+GKS+LL+ I G + SG++K+ +++ +P+ + S
Sbjct: 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVND-QSHTGLAPYQRPVSMLF 76
Query: 697 EDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIG---ERGI---------NLSG 744
++N LF R+ L L++ + + V+ + GI LSG
Sbjct: 77 QENNLFAHLTVRQNI-----GLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSG 131
Query: 745 GQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL------RSKTVIYVT 798
GQ+QR+ +AR L + I L D+PFSA+D L +E +L L+ R +T++ VT
Sbjct: 132 GQRQRVALARCLVRPNPILLLDEPFSALDP-----LLREEMLALVKQLCSERQRTLLMVT 186
Query: 799 HQVEFLPA-ADLILVMKDGKITQAGK 823
H + A A I V+ GKI
Sbjct: 187 HHLSDARAIASQIAVVSQGKIKVVSD 212
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 86.3 bits (214), Expect = 2e-18
Identities = 59/238 (24%), Positives = 113/238 (47%), Gaps = 28/238 (11%)
Query: 1059 NLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGI 1118
N+ +Y L+ ++ P G T IVG GSGKST+ + + I + +GEI +
Sbjct: 12 NVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQ 71
Query: 1119 NISSIGLHDLRSRLSIIPQDP-TMFEGTV---------RNNLDPLEEYKDEEIWEALDKC 1168
I+ LR + I+ Q+P F G++ N+ P +E + EAL +
Sbjct: 72 AITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMH-RRVSEALKQV 130
Query: 1169 QLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATD- 1227
+ + + L S GQ+Q V + VL V++LDEAT+ +D
Sbjct: 131 DMLERADYEPNAL-----------SGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQ 179
Query: 1228 ---NLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSS 1282
+L+++ +H + T+I+I H ++ +++D V++++ G + + +PT++ ++
Sbjct: 180 NLLDLVRKVKSEH--NITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHAEE 235
|
Length = 269 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 87.0 bits (216), Expect = 3e-18
Identities = 64/249 (25%), Positives = 115/249 (46%), Gaps = 23/249 (9%)
Query: 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIV 1114
++ N+ RY + + T G ++G +GSGK+T ++ + R++EPT+GEI+
Sbjct: 2 IEFENVSKRYGNKK--AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEIL 59
Query: 1115 IDGINISSIGLHDLRSRLSIIPQDPTMFEG-TVRNN-------LDPLEEYKDEEIWEALD 1166
IDG +IS + +LR ++ + Q +F TV N L +E + E LD
Sbjct: 60 IDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLD 119
Query: 1167 KCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTAT 1226
L + R S GQ+Q V + R L +L++DE ++D T
Sbjct: 120 LVGLD------PSEYADRYP---HELSGGQQQRVGVARALAADPPILLMDEPFGALDPIT 170
Query: 1227 DNLIQQTLR--QHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENKSSS 1283
+Q+ ++ Q T++ + H I + +D + ++ G I +YD+P ++L N ++
Sbjct: 171 RKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPAND 230
Query: 1284 F-AQLVAEY 1291
F E
Sbjct: 231 FVEDFFGES 239
|
Length = 309 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 85.8 bits (212), Expect = 3e-18
Identities = 59/213 (27%), Positives = 113/213 (53%), Gaps = 23/213 (10%)
Query: 1085 TGIVGRTGSGKSTLIQTLFRIVE--PTA---GEIVIDGINI--SSIGLHDLRSRLSIIPQ 1137
T ++G +G GKST ++++ R+ + P+A GEI+ +G+NI S+I + +LR + ++ Q
Sbjct: 50 TALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQ 109
Query: 1138 DPTMFEGTVRNNLDPLEEYK--------DEEIWEALDKCQLGDEVRNKEGKLDSRVTENG 1189
P F ++ NN+ +Y DE + E+L K L DEV++ R+ +
Sbjct: 110 KPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKD-------RLHSSA 162
Query: 1190 ENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHR 1249
+ S GQ+Q +C+ R L K VL+LDE +++D ++ I++ + + + ++I + H
Sbjct: 163 LSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHN 222
Query: 1250 ITSVID-SDMVLLLSHGIIEEYDSPTKLLENKS 1281
+ + SD +G + EYD ++ +
Sbjct: 223 MQQALRVSDRTAFFLNGDLVEYDQTEQIFTSPK 255
|
Length = 268 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 5e-18
Identities = 59/216 (27%), Positives = 99/216 (45%), Gaps = 27/216 (12%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LGEVPKISGTLKLCGTKAY----- 684
L+DI+L + G A+ G G GKS+LL + L G + L G Y
Sbjct: 16 LKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVD 75
Query: 685 ----------VAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTV 734
V Q P G+I DN+ +G + K L+ +++ L + D+
Sbjct: 76 VLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDE-RVEEALRKAALWDEVK 134
Query: 735 IGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTV 794
+ LSGGQ+QR+ +ARAL + ++ L D+P SA+D + + +E++ L + T+
Sbjct: 135 DRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPIS-TAKIEELIAELKKEYTI 193
Query: 795 IYVTH---QVEFLPAADLILVMKDGKITQAGKYNDI 827
+ VTH Q + AD + +G++ + G I
Sbjct: 194 VIVTHNMQQAARV--ADRTAFLLNGRLVEFGPTEQI 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 87.0 bits (216), Expect = 5e-18
Identities = 75/211 (35%), Positives = 96/211 (45%), Gaps = 36/211 (17%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTLKLCG---------TKAY 684
L+DI+L V G V + G G GK++LL I G E +GT+ G + Y
Sbjct: 20 LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT-AGTIYQGGRDITRLPPQKRDY 78
Query: 685 --VAQS----PWIQSGNIEDNI---LFGKPMDREKYD-RVLEACSLKKDLEILSFGDQTV 734
V QS P + + DNI L + M R + RV E L G
Sbjct: 79 GIVFQSYALFP---NLTVADNIAYGLKNRGMGRAEVAERVAELLDL--------VGLPGS 127
Query: 735 IGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLR--SK 792
+ LSGGQ+QR+ +ARAL + L D+P SA+DA HL E + L R
Sbjct: 128 ERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTE-IRQLQRRLGV 186
Query: 793 TVIYVTH-QVEFLPAADLILVMKDGKITQAG 822
T I VTH Q E L AD I+VM G I Q G
Sbjct: 187 TTIMVTHDQEEALSMADRIVVMNHGVIEQVG 217
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 88.8 bits (221), Expect = 6e-18
Identities = 60/232 (25%), Positives = 97/232 (41%), Gaps = 47/232 (20%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILG----EVPKISGTLKLCGTK-------- 682
+RD++ +V G + + G GSGKS+L ++G SG + L G
Sbjct: 25 VRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84
Query: 683 ---------AYVAQSPW------IQSGN--IEDNILFGKPMDREKYDRVLEACSLKKDLE 725
A + Q P + G+ E L GK E R +E LE
Sbjct: 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVEL------LE 138
Query: 726 ILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL 785
+ D LSGG +QR+ IA AL + + D+P +A+D T + +
Sbjct: 139 QVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTT-----QAQI 193
Query: 786 LGLLRS------KTVIYVTHQVEFLP-AADLILVMKDGKITQAGKYNDILNS 830
L LL+ V+++TH + + AD ++VM G+I + G +IL++
Sbjct: 194 LDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSN 245
|
Length = 539 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 86.7 bits (215), Expect = 6e-18
Identities = 71/212 (33%), Positives = 103/212 (48%), Gaps = 24/212 (11%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK-----------A 683
L DI+L + G VA+ G GSGK++LL I G + SG ++ GT
Sbjct: 18 LNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVG 77
Query: 684 YVAQS-PWIQSGNIEDNILFGKPM--DREKYDRVLEACSLKKDLEILSFGDQTVIGER-G 739
+V Q + + DNI FG + RE+ + A K ++L + +R
Sbjct: 78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNA---AAIKAKVTQLLEMVQLAHLADRYP 134
Query: 740 INLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSK---TVIY 796
LSGGQKQR+ +ARAL + I L D+PF A+DA L + L L + T ++
Sbjct: 135 AQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRR--WLRQLHEELKFTSVF 192
Query: 797 VTH-QVEFLPAADLILVMKDGKITQAGKYNDI 827
VTH Q E + AD ++VM G I QAG + +
Sbjct: 193 VTHDQEEAMEVADRVVVMSQGNIEQAGTPDQV 224
|
Length = 353 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 86.1 bits (213), Expect = 1e-17
Identities = 72/300 (24%), Positives = 127/300 (42%), Gaps = 44/300 (14%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------------ 682
+ D +L + G + G GSGKS+ + + + +G + + G
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREV 68
Query: 683 -----AYVAQS-PWIQSGNIEDNILFGKPM----DREKYDRVLEACSLKKDLE--ILSFG 730
V Q I N G + ++E+ ++ LE L LE +
Sbjct: 69 RRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLV-GLEEYEHRYP 127
Query: 731 DQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLR 790
D+ LSGG +QR+ +ARAL + DI L D+ FSA+D + ++ L L
Sbjct: 128 DE---------LSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSM-QDELKKLQA 177
Query: 791 S--KTVIYVTHQV-EFLPAADLILVMKDGKITQAGKYNDILNSGTDFMVLVGAHQQALSA 847
+ KT++++TH + E + D I++MK G+I Q G ++IL + + V + LS
Sbjct: 178 TLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYVEEFIGKVDLSQ 237
Query: 848 LDSIEGGPVSERISMNKENGGMDTTNGVTMKEGNEDIQTDKVDEQYYIPSARELSRLVGV 907
+ ERI+ G + T + + ++ ++VD Y + +L +V V
Sbjct: 238 VFDA------ERIAQRMNTGPITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDV 291
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 82.5 bits (205), Expect = 2e-17
Identities = 58/215 (26%), Positives = 100/215 (46%), Gaps = 33/215 (15%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDL-- 1128
L+G++ + G IVG +GSGKSTL+ L + PT+GE+ +DG +IS + +L
Sbjct: 19 ALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAA 78
Query: 1129 --RSRLSIIPQD----PTMFEGTVRNNL--------DPLEEYKDEEIWEALDKCQLGDEV 1174
R + + Q P + T N+ P +E + E E L++ LGD +
Sbjct: 79 FRRRHIGFVFQSFNLLPDL---TALENVELPLLLAGVPKKERR-ERAEELLERVGLGDRL 134
Query: 1175 RNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTL 1234
+ +L S GQ+Q V + R L K+++ DE T ++D+ T + + L
Sbjct: 135 NHYPSEL-----------SGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELL 183
Query: 1235 RQ--HFSDCTVITIAHRITSVIDSDMVLLLSHGII 1267
R+ + T++ + H +D ++ L G I
Sbjct: 184 RELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.0 bits (211), Expect = 2e-17
Identities = 61/219 (27%), Positives = 100/219 (45%), Gaps = 37/219 (16%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTLKLCGTK----------- 682
L D++L++ G + G G+GKS+LL I E P SG++ + G
Sbjct: 22 LDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT-SGSVFVDGQDLTALSEAELRQ 80
Query: 683 -----AYVAQSP-WIQSGNIEDNILF-----GKPMDREKYDRVLEACSLKKDLEILSFGD 731
+ Q + S + +N+ F G P E RV E LE++ D
Sbjct: 81 LRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVP-KAEIKQRVAEL------LELVGLSD 133
Query: 732 QTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRS 791
+ LSGGQKQR+ IARAL + I L D+ SA+D T + E+L + R
Sbjct: 134 K--ADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSIL-ELLKDINRE 190
Query: 792 K--TVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDI 827
T++ +TH++E + D + V+ G++ + G +++
Sbjct: 191 LGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEV 229
|
Length = 339 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 84.1 bits (208), Expect = 2e-17
Identities = 70/244 (28%), Positives = 118/244 (48%), Gaps = 36/244 (14%)
Query: 1059 NLQVRYAPHLPLVLRGLT-CTFP--GGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVI 1115
N+ Y+P P+ +GL +F G +VG TGSGKSTL+Q +++P++G I I
Sbjct: 7 NVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITI 66
Query: 1116 DGINI----SSIGLHDLRSRLSIIPQDP--TMFEGTVRN-------NLDPLEEYKDEEIW 1162
G +I + L LR ++S++ Q P +FE TV N E+ E+
Sbjct: 67 AGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKAL 126
Query: 1163 EALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASV 1222
+ L K L +++ +K + S GQ + V + V+ + ++L LDE A +
Sbjct: 127 KWLKKVGLSEDLISK----------SPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGL 176
Query: 1223 DTATDNLIQQTLRQHFSDC-----TVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKL 1276
D ++ + Q F D TVI + H + V + +D VL+L HG + ++ SP ++
Sbjct: 177 DPEG----RKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEI 232
Query: 1277 LENK 1280
+K
Sbjct: 233 FSDK 236
|
Length = 287 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 2e-17
Identities = 66/210 (31%), Positives = 96/210 (45%), Gaps = 34/210 (16%)
Query: 636 RDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK-----------AY 684
+DINL + G V G G GKS+LL I G SG L + +
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGM 79
Query: 685 VAQS----PWIQSGNIEDNILFG----KPMDREKYDRVLEACSLKKDLEILSFGDQTVIG 736
V QS P + ++ +N+ FG E RV + E+L ++
Sbjct: 80 VFQSYALYPHL---SVAENMSFGLKLAGAKKEEINQRVNQVA------EVLQLAH--LLD 128
Query: 737 ERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEV--LLGLLRSKTV 794
+ LSGGQ+QR+ I R L + ++L D+P S +DA + E+ L L T+
Sbjct: 129 RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGR-TM 187
Query: 795 IYVTH-QVEFLPAADLILVMKDGKITQAGK 823
IYVTH QVE + AD I+V+ G++ Q GK
Sbjct: 188 IYVTHDQVEAMTLADKIVVLDAGRVAQVGK 217
|
Length = 369 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 2e-17
Identities = 68/241 (28%), Positives = 121/241 (50%), Gaps = 28/241 (11%)
Query: 1057 ILNLQVRYAPHLPL---VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEI 1113
I NL Y P L + G G++G TGSGKSTLIQ L +++PT+G+I
Sbjct: 5 IENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKI 64
Query: 1114 VIDGINIS--SIGLHDLRSRLSIIPQDP--TMFEGTVRN-------NLDPLEEYKDEEIW 1162
+IDG++I+ + L D+R ++ ++ Q P +FE T+ NL EE + +
Sbjct: 65 IIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVK 124
Query: 1163 EALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASV 1222
A++ L + E D E S GQ++ V + V+ + K+L+LDE TA +
Sbjct: 125 RAMNIVGL-----DYEDYKDKSPFE----LSGGQKRRVAIAGVVAMEPKILILDEPTAGL 175
Query: 1223 D-TATDNLIQQ--TLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLE 1278
D D ++ + L + + + T+I ++H + V +D +++++ G E +P ++ +
Sbjct: 176 DPKGRDEILNKIKELHKEY-NMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFK 234
Query: 1279 N 1279
Sbjct: 235 E 235
|
Length = 287 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 3e-17
Identities = 68/249 (27%), Positives = 108/249 (43%), Gaps = 50/249 (20%)
Query: 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LGEVP 670
AIEI + N + L++INL + A+ G G GKS+LL + L
Sbjct: 1 AIEIENLNLFY---GEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGV 57
Query: 671 KISGTLKLCGTKAY---------------VAQSPWIQSGNIEDNILFGKPM----DREKY 711
+I G + G Y V Q P +I DNI +G + D+++
Sbjct: 58 RIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKEL 117
Query: 712 DRVLEACSLKK---------DLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADI 762
D ++E SLKK L + G LSGGQ+QR+ IARAL + ++
Sbjct: 118 DEIVEE-SLKKAALWDEVKDRLHDSALG-----------LSGGQQQRLCIARALAVEPEV 165
Query: 763 YLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLP-AADLILVMKDGKITQA 821
L D+P SA+D + +E++ L + T++ VTH ++ +D DG++ +
Sbjct: 166 LLLDEPTSALDP-IATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEY 224
Query: 822 GKYNDILNS 830
G I +
Sbjct: 225 GPTEQIFTN 233
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 84.1 bits (208), Expect = 3e-17
Identities = 71/252 (28%), Positives = 104/252 (41%), Gaps = 50/252 (19%)
Query: 652 GTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSP--------WIQS------GNIE 697
G G GK++LL + G SG++ L G V P QS +E
Sbjct: 3 GPSGCGKTTLLRLLAGFEQPDSGSIMLDGED--VTNVPPHLRHINMVFQSYALFPHMTVE 60
Query: 698 DNILFGKPMDR----EKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIA 753
+N+ FG M + E RVLEA L +++ F D+ + LSGGQ+QR+ +A
Sbjct: 61 ENVAFGLKMRKVPRAEIKPRVLEALRL---VQLEEFADR-----KPHQLSGGQQQRVALA 112
Query: 754 RALYQDADIYLFDDPFSAVDAHTGSHLFKEVL-----LGLLRSKTVIYVTH-QVEFLPAA 807
RAL I L D+P SA+D + E+ LG+ T ++VTH Q E + +
Sbjct: 113 RALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGI----TFVFVTHDQEEAMTMS 168
Query: 808 DLILVMKDGKITQAGKYNDI------------LNSGTDFMVLVGAHQQALSALDSIEGGP 855
D I +M+ GKI Q G +I + F V + L +EG
Sbjct: 169 DRIAIMRKGKIAQIGTPEEIYEEPANLFVARFIGEINVFEATVIERKSEQVVLAGVEGRR 228
Query: 856 VSERISMNKENG 867
+ E
Sbjct: 229 CDIYTDVPVEKD 240
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 81.4 bits (202), Expect = 4e-17
Identities = 59/226 (26%), Positives = 107/226 (47%), Gaps = 26/226 (11%)
Query: 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIV 1114
++I NL + VL+G+ T G I+G +GSGKSTL++ + + EP +G I+
Sbjct: 1 IEIKNLHKSFGDFH--VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTII 58
Query: 1115 IDGINI--SSIGLHDLRSRLSIIPQDPTMFEG-TVRNN--LDPLEEYK------DEEIWE 1163
IDG+ + +++LR ++ ++ Q +F TV N L P++ +E E
Sbjct: 59 IDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALE 118
Query: 1164 ALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVD 1223
L+K L D+ +L S GQ+Q V + R L KV++ DE T+++D
Sbjct: 119 LLEKVGLADKADAYPAQL-----------SGGQQQRVAIARALAMNPKVMLFDEPTSALD 167
Query: 1224 TATDNLIQQTLRQHFSD-CTVITIAHRITSVID-SDMVLLLSHGII 1267
+ ++ + T++ + H + + +D V+ + G I
Sbjct: 168 PELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 86.1 bits (214), Expect = 4e-17
Identities = 51/215 (23%), Positives = 93/215 (43%), Gaps = 36/215 (16%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPW---- 690
+ D++ + G + + G GSGKS+L + G +P SG++ G +
Sbjct: 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLR 366
Query: 691 --IQ------------SGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIG 736
IQ + D + +P+ E + E+L + +
Sbjct: 367 RRIQMVFQDPYSSLNPRMTVGDIL--AEPLRIHGGGSGAER--RARVAELL---ELVGLP 419
Query: 737 ERGIN-----LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRS 791
++ LSGGQ+QR+ IARAL + + + D+P SA+D + + LL L+
Sbjct: 420 PEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLN--LLKDLQE 477
Query: 792 K---TVIYVTHQVEFLPA-ADLILVMKDGKITQAG 822
+ T ++++H + + AD + VM DG+I + G
Sbjct: 478 ELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEG 512
|
Length = 539 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 82.1 bits (204), Expect = 4e-17
Identities = 59/236 (25%), Positives = 103/236 (43%), Gaps = 41/236 (17%)
Query: 1059 NLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGI 1118
L R+ + L ++ + G G++G G+GK+TL + + PT+G ++ DG
Sbjct: 5 GLTKRFGGLV--ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGE 62
Query: 1119 NISSIGLHDLRSRLSIIP--QDPTMFEG-TVRNNLD---------------PLEEYKD-- 1158
+I+ + H+ +RL I Q P +F TV N+ E ++
Sbjct: 63 DITGLPPHE-IARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREAR 121
Query: 1159 EEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEA 1218
E E L++ L D D S GQ++ + + R L K+L+LDE
Sbjct: 122 ERAEELLERVGLAD-------LADRPA----GELSYGQQRRLEIARALATDPKLLLLDEP 170
Query: 1219 TASVDTA-TDNLIQ--QTLRQHFSDCTVITIAHRITSVID-SDMVLLLSHG-IIEE 1269
A ++ T+ L + + LR+ TV+ + H + V+ +D V +L G +I E
Sbjct: 171 AAGLNPEETEELAELIRELRER--GITVLLVEHDMDVVMSLADRVTVLDQGRVIAE 224
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 5e-17
Identities = 69/222 (31%), Positives = 100/222 (45%), Gaps = 44/222 (19%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTLKLCG-----TKAY---- 684
L ++L + G + G G GK++LL I G E P SG + L G +
Sbjct: 16 LDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT-SGEILLDGKDITNLPPHKRPV 74
Query: 685 --VAQS----PWIQSGNIEDNILFGKPMDREKYD----RVLEACSLKKDLEILSFGDQTV 734
V Q+ P + + +NI FG + + RV EA L+++
Sbjct: 75 NTVFQNYALFPHL---TVFENIAFGLRLKKLPKAEIKERVAEA------LDLVQLEGY-- 123
Query: 735 IGERGIN-LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSK- 792
R + LSGGQ+QR+ IARAL + + L D+P A+D L K++ L L R +
Sbjct: 124 -ANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDL----KLRKDMQLELKRLQK 178
Query: 793 ----TVIYVTH-QVEFLPAADLILVMKDGKITQAGKYNDILN 829
T ++VTH Q E L +D I VM GKI Q G +I
Sbjct: 179 ELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYE 220
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 82.2 bits (203), Expect = 6e-17
Identities = 61/217 (28%), Positives = 112/217 (51%), Gaps = 31/217 (14%)
Query: 1085 TGIVGRTGSGKSTLIQTLFRIVE-----PTAGEIVIDGINI--SSIGLHDLRSRLSIIPQ 1137
T I+G +G GKST I+TL R+VE T G+I+ NI S + +LR+ + ++ Q
Sbjct: 53 TAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQ 112
Query: 1138 DPTMFEGTVRNNL------DPLEEYK--DEEIWEALDKCQLGDEVRNKEGKLDSRVTENG 1189
P F ++ +N+ +++ K DE + ++L + DE+++ R+ +N
Sbjct: 113 KPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKD-------RLHDNA 165
Query: 1190 ENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTAT----DNLIQQTLRQHFSDCTVIT 1245
S GQ+Q +C+ R L + V+++DE T+++D + + L+Q+ L++ +S +I
Sbjct: 166 YGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQE-LKKDYS---III 221
Query: 1246 IAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENKS 1281
+ H + SD +G + EYD K+ N S
Sbjct: 222 VTHNMQQAARISDKTAFFLNGYVNEYDDTDKIFSNPS 258
|
Length = 271 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 7e-17
Identities = 58/230 (25%), Positives = 100/230 (43%), Gaps = 37/230 (16%)
Query: 1063 RYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISS 1122
Y P LR ++ P G + G +G+GKSTL++ ++ PT G+I+++G ++S
Sbjct: 10 AY-PGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSR 68
Query: 1123 IGLHD---LRSRLSIIPQD----PTMFEGTVRNNLD-PLE-------EYKDEEIWEALDK 1167
+ + LR ++ ++ QD P TV N+ PL E + + E LD
Sbjct: 69 LKGREIPFLRRQIGVVFQDFRLLPDR---TVYENVALPLRVIGKPPREIR-RRVSEVLDL 124
Query: 1168 CQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATD 1227
L + R +L S G++Q V + R ++ + VL+ DE T ++D
Sbjct: 125 VGLKHKARALPSQL-----------SGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLS 173
Query: 1228 NLIQQTL-RQHFSDCTVITIAHRITSVIDSDM---VLLLSHGIIEEYDSP 1273
I + + TV+ H + V + M VL L G + +S
Sbjct: 174 WEIMRLFEEINRLGTTVLMATHDLELV--NRMRHRVLALEDGRLVRDESR 221
|
Length = 223 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 83.5 bits (207), Expect = 9e-17
Identities = 68/222 (30%), Positives = 106/222 (47%), Gaps = 40/222 (18%)
Query: 631 NNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTLKLCGTKAYVAQSP 689
+ +++L + +G + + G G GK+++L I G E P SG + L G + P
Sbjct: 26 GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD-SGRIMLDGQD--ITHVP 82
Query: 690 --------WIQS------GNIEDNILFGKPMDR----EKYDRVLEACSLKKDLEILSFGD 731
QS + +N+ FG M + E RV+EA + + LE F
Sbjct: 83 AENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQ-LE--EFAQ 139
Query: 732 QTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL--L 789
+ + LSGGQ+QR+ IARA+ + L D+ SA+D L K++ L L
Sbjct: 140 R-----KPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDY----KLRKQMQNELKAL 190
Query: 790 RSK---TVIYVTH-QVEFLPAADLILVMKDGKITQAGKYNDI 827
+ K T ++VTH Q E L +D I+VM+DG+I Q G +I
Sbjct: 191 QRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREI 232
|
Length = 375 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.0 bits (201), Expect = 9e-17
Identities = 45/172 (26%), Positives = 85/172 (49%), Gaps = 24/172 (13%)
Query: 1059 NLQVRYAP-HLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDG 1117
NL Y LRG++ G ++GR G+GK+TL++T+ +V P +G I+ DG
Sbjct: 8 NLSAGYGKIQ---ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDG 64
Query: 1118 INISSIGLHDL-RSRLSIIPQDPTMF-EGTVRNNL------DPLEEYKDEEIWEALDKC- 1168
+I+ + H+ R ++ +P+ +F TV NL +E ++ ++ E +
Sbjct: 65 EDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFP 124
Query: 1169 QLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATA 1220
+L + + G L S G++Q++ + R L+ + K+L+LDE +
Sbjct: 125 RLKERRNQRAGTL-----------SGGEQQMLAIARALMSRPKLLLLDEPSE 165
|
Length = 237 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 9e-17
Identities = 69/229 (30%), Positives = 103/229 (44%), Gaps = 49/229 (21%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------------ 682
L++INL + G VA+ G G+GKS+LL CI V SG++ L GT
Sbjct: 18 LKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKL 77
Query: 683 ----AYVAQSPWIQSGNIE-----DNILFGK------------PMDREKYDRVLEACSLK 721
+ Q IE +N+L G+ E +R L A L+
Sbjct: 78 RRRIGMIFQ----HYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSA--LE 131
Query: 722 KDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLF 781
+ + + Q R LSGGQ+QR+ IARAL Q D+ L D+P +++D T S
Sbjct: 132 R-VGLADKAYQ-----RADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKT-SKQV 184
Query: 782 KEVLLGLLRSK--TVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDI 827
+ L + + TVI HQV+ AD I+ +K G+I G +++
Sbjct: 185 MDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 1e-16
Identities = 69/223 (30%), Positives = 110/223 (49%), Gaps = 23/223 (10%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINI---SSIGLHD 1127
+L G+ P G I+G +GSGKSTL++ + ++ P GEI+IDG +I S L++
Sbjct: 23 ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYE 82
Query: 1128 LRSRLSIIPQDPTMFEG-TVRNNLD-PLEEYKD---EEIWE-ALDKCQLGDEVRNKEGKL 1181
+R R+ ++ Q +F TV N+ PL E+ I E L K +L V +
Sbjct: 83 IRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLEL---VGLRGAAA 139
Query: 1182 DSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVD----TATDNLIQQTLRQH 1237
D +E S G R+ V L R + ++L LDE T+ +D D LI + L
Sbjct: 140 DLYPSE----LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELI-RELNDA 194
Query: 1238 FSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLEN 1279
TVI + H + S++ +D V +L+ G + +P +LL +
Sbjct: 195 L-GLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLAS 236
|
Length = 263 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 80.3 bits (199), Expect = 1e-16
Identities = 66/227 (29%), Positives = 103/227 (45%), Gaps = 45/227 (19%)
Query: 633 PTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTLKLCGT-------KAY 684
L+D++L V G + G G+GKS+L+ CI G E P SG++ + GT K
Sbjct: 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT-SGSVLVDGTDLTLLSGKEL 77
Query: 685 VAQSPWI----------QSGNIEDNILF-----GKPMDREKYDRVLEACSLKKDLEILSF 729
I S + +N+ G P E +RVLE LE++
Sbjct: 78 RKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKA-EIEERVLEL------LELVGL 130
Query: 730 GDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL 789
D+ LSGGQKQR+ IARAL + + L D+ SA+D T + +L LL
Sbjct: 131 EDK--ADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPET-----TQSILALL 183
Query: 790 RSK------TVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDILN 829
R T++ +TH++E + D + VM+ G++ + G ++
Sbjct: 184 RDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.9 bits (198), Expect = 2e-16
Identities = 57/233 (24%), Positives = 103/233 (44%), Gaps = 32/233 (13%)
Query: 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIV 1114
++I + + VL + + G I+G +G GKSTL++ + + +PT+GE++
Sbjct: 4 LEIEGVSKSFGGVE--VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVL 61
Query: 1115 IDGINISSIGLHDLRSRLSIIPQDPTMFEG-TVRNNLD-PLE------EYKDEEIWEALD 1166
+DG ++ G + + Q+ + TV +N+ LE E E L+
Sbjct: 62 LDGRPVTGPG-----PDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLE 116
Query: 1167 KCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTAT 1226
L E K ++ S G RQ V + R L + K+L+LDE ++D T
Sbjct: 117 LVGLAG----FEDKYPHQL-------SGGMRQRVAIARALATRPKLLLLDEPFGALDALT 165
Query: 1227 DNLIQQTLRQ--HFSDCTVITIAHRITSVID-SDMVLLLSHG---IIEEYDSP 1273
+Q L + + TV+ + H + + +D V++LS+ I EE +
Sbjct: 166 REELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIGEELEID 218
|
Length = 248 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 2e-16
Identities = 63/259 (24%), Positives = 103/259 (39%), Gaps = 53/259 (20%)
Query: 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEP----T 1109
EV+ L ++ +R ++ G GIVG +GSGKSTL L ++ T
Sbjct: 7 EVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRIT 66
Query: 1110 AGEIVIDGINISSIGLHDLRS----RLSIIPQDPT------------MFEGTVRNNLDPL 1153
+GE+++DG ++ + ++R R+++I QDP + E +
Sbjct: 67 SGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSR 126
Query: 1154 EEYKDEEIWEALDKCQLGDEVRNKE------GKLDSRVTENGENWSMGQRQLVCLGRVLL 1207
E + + E L++ L D R G G RQ V + L
Sbjct: 127 AEARKRAV-ELLEQVGLPDPERRDRYPHQLSG---------------GMRQRVMIAMALA 170
Query: 1208 KKSKVLVLDEATASVDTATDNLIQQTLRQHFSD------CTVITIAHRITSVID-SDMVL 1260
K K+L+ DE T TA D Q + D V+ I H + V + +D V+
Sbjct: 171 LKPKLLIADEPT----TALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVV 226
Query: 1261 LLSHGIIEEYDSPTKLLEN 1279
++ G I E ++L N
Sbjct: 227 VMYKGEIVETGPTEEILSN 245
|
Length = 539 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.2 bits (199), Expect = 2e-16
Identities = 60/238 (25%), Positives = 109/238 (45%), Gaps = 27/238 (11%)
Query: 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIV 1114
++I NL + VL+G++ + G I+G +GSGKSTL++ L + EP +G I
Sbjct: 3 IEIKNLSKSFGDKE--VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSIT 60
Query: 1115 IDGINIS-SIGLHDLRSRLSIIPQDPTMFEG-TVRNNL---------DPLEEYKDEEIWE 1163
+DG ++ + LR ++ ++ Q +F TV N+ E +++ + E
Sbjct: 61 VDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKAL-E 119
Query: 1164 ALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVD 1223
L+K L D+ +L S GQ+Q V + R L KV++ DE T+++D
Sbjct: 120 LLEKVGLADKADAYPAQL-----------SGGQQQRVAIARALAMDPKVMLFDEPTSALD 168
Query: 1224 TATDNLIQQTLRQ-HFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLEN 1279
+ ++ T+I + H + + +D V+ + G I E P + +N
Sbjct: 169 PELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDN 226
|
Length = 240 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 79.5 bits (196), Expect = 2e-16
Identities = 60/209 (28%), Positives = 90/209 (43%), Gaps = 36/209 (17%)
Query: 637 DINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTLKLCG---TKAYVAQSP--- 689
+L G A+ G GSGKS+LL+ I G E P+ SG + + G T A A P
Sbjct: 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ-SGRVLINGVDVTAAPPADRPVSM 74
Query: 690 WIQSGN------IEDNILFG-------KPMDREKYDRVLEACSLKKDLEILSFGDQTVIG 736
Q N +E N+ G DR+ + L G +
Sbjct: 75 LFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALA-----------RVGLAGLEK 123
Query: 737 ERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSK--TV 794
LSGG++QR+ +AR L +D + L D+PF+A+D +++L L TV
Sbjct: 124 RLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPAL-RAEMLDLVLDLHAETKMTV 182
Query: 795 IYVTHQVE-FLPAADLILVMKDGKITQAG 822
+ VTHQ E A ++ + +G+I G
Sbjct: 183 LMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 2e-16
Identities = 58/204 (28%), Positives = 97/204 (47%), Gaps = 14/204 (6%)
Query: 1070 LVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLR 1129
+ G++ T G TG++G G+GK+T ++ L ++EP AG +DG ++ + R
Sbjct: 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPA-EAR 77
Query: 1130 SRLSIIPQDPTMFEG-TVRNNLD---PLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRV 1185
RL + +++ T R NL+ L K +E+ L++ L D + +E LD RV
Sbjct: 78 RRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEE--LADRLGMEE-LLDRRV 134
Query: 1186 TENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVD-TATDNLIQQTLRQHFSDCTVI 1244
+S G RQ V + R L+ VL+LDE T +D AT L + + ++
Sbjct: 135 ----GGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCIL 190
Query: 1245 TIAHRITSVID-SDMVLLLSHGII 1267
H + V D V++L G +
Sbjct: 191 FSTHIMQEVERLCDRVVVLHRGRV 214
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 2e-16
Identities = 67/204 (32%), Positives = 100/204 (49%), Gaps = 25/204 (12%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSG 694
L DINL++ G V + G GSGK++LL+ I G G+LK+ G + Y A +
Sbjct: 21 LFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEK--ELV 78
Query: 695 NIEDNI--------LFG---------KPMDREKYDRVLEACSLKKD-LEILSFGDQTVIG 736
+ NI L G ++ + EA + LE + GD +
Sbjct: 79 QLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDH--LD 136
Query: 737 ERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSK--TV 794
NLSGGQKQR+ IARAL + L D+P +A+D+ +G + E++ L R + T+
Sbjct: 137 YYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVV-ELMQKLAREQGCTI 195
Query: 795 IYVTHQVEFLPAADLILVMKDGKI 818
+ VTH L AD I+ M+DGK+
Sbjct: 196 LIVTHDNRILDVADRIVHMEDGKL 219
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 79.4 bits (197), Expect = 2e-16
Identities = 44/166 (26%), Positives = 78/166 (46%), Gaps = 35/166 (21%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS 1130
+L G++ T P G ++GR G+GK+TL++T+ ++ P +G I DG +I+ + H+ R+
Sbjct: 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHE-RA 73
Query: 1131 RLSI--IPQDPTMFEG-TVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEG-------- 1179
R I +P+ +F TV NL LG R +
Sbjct: 74 RAGIGYVPEGRRIFPELTVEENL------------------LLGAYARRRAKRKARLERV 115
Query: 1180 -----KLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATA 1220
+L R + S G++Q++ + R L+ + K+L+LDE +
Sbjct: 116 YELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSE 161
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.0 bits (197), Expect = 2e-16
Identities = 56/223 (25%), Positives = 110/223 (49%), Gaps = 26/223 (11%)
Query: 1085 TGIVGRTGSGKSTLIQTLFRIVE-----PTAGEIVIDGINI--SSIGLHDLRSRLSIIPQ 1137
T I+G +G GK+TL++++ R+ + G+I G +I + + + R ++ ++ Q
Sbjct: 32 TAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQ 91
Query: 1138 DPTMFEGTVRNNLD--------PLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENG 1189
PT F ++ +N+ + D + E+L K L DEV+ S + + G
Sbjct: 92 KPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVK-------SELNKPG 144
Query: 1190 ENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHR 1249
S GQ+Q +C+ R L + +V++LDE T+++D I++ L + + T++ + H
Sbjct: 145 TRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHN 204
Query: 1250 ITSVID-SDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLVAEY 1291
I I +D + + G + EY +++E + +L EY
Sbjct: 205 IGQAIRIADYIAFMYRGELIEYGPTREIVERPKN---KLTEEY 244
|
Length = 250 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 80.0 bits (197), Expect = 3e-16
Identities = 58/228 (25%), Positives = 104/228 (45%), Gaps = 15/228 (6%)
Query: 629 SSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------ 682
++ P L+ + + G +V +CG GSGKSSL V G + + G
Sbjct: 31 NNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPL 90
Query: 683 -------AYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVI 735
+ + Q P + SG+I N+ ++ LE LK ++ L G V+
Sbjct: 91 HTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVV 150
Query: 736 GERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVI 795
E G N S GQ+Q +ARA + + I + D+ +++D T ++ ++V++ +TV+
Sbjct: 151 TEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMAT-ENILQKVVMTAFADRTVV 209
Query: 796 YVTHQVEFLPAADLILVMKDGKITQAGKYNDIL-NSGTDFMVLVGAHQ 842
+ H+V + ADL+LV+ G + + ++L F LV +
Sbjct: 210 TIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLVRTDK 257
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 3e-16
Identities = 55/211 (26%), Positives = 107/211 (50%), Gaps = 17/211 (8%)
Query: 1087 IVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDPTMFEG-T 1145
I+G TGSGKS L++T+ ++P +G+I+++G +I+ L + +S +PQ+ +F T
Sbjct: 30 ILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDIT--NLPPEKRDISYVPQNYALFPHMT 87
Query: 1146 VRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKL--DSRVTENGENWSMGQRQLVCLG 1203
V N+ Y ++ DK ++ +V L D + E S G++Q V +
Sbjct: 88 VYKNI----AYGLKKRKV--DKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIA 141
Query: 1204 RVLLKKSKVLVLDEATASVDTATDNLIQQTLR--QHFSDCTVITIAHRITSV-IDSDMVL 1260
R L+ K+L+LDE +++D T +++ L+ + TV+ + H +D V
Sbjct: 142 RALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVA 201
Query: 1261 LLSHGIIEEYDSPTKLLENKSSSFAQLVAEY 1291
++ +G + + P ++ + + F VAE+
Sbjct: 202 IMLNGKLIQVGKPEEVFKKPKNEF---VAEF 229
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 3e-16
Identities = 62/229 (27%), Positives = 104/229 (45%), Gaps = 31/229 (13%)
Query: 1067 HLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLH 1126
HLP+ T P G I+G +G+GKSTL+ + P +GEI+I+G++ +
Sbjct: 13 HLPMRF---DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHT--ASP 67
Query: 1127 DLRSRLSIIPQDPTMFEG-TVRNNLD----P---LEEYKDEEIWEALDKCQLGDEVRNKE 1178
+S++ Q+ +F TV N+ P L + E++ A + L ++
Sbjct: 68 PAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLP 127
Query: 1179 GKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDN----LIQQTL 1234
G+L S GQRQ V L R L+++ +L+LDE +++D A L+ Q
Sbjct: 128 GEL-----------SGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLC 176
Query: 1235 RQHFSDCTVITIAHRITSVIDS-DMVLLLSHGIIEEYDSPTKLLENKSS 1282
+ T++ + H D V+ L +G I S +LL K+S
Sbjct: 177 DE--RKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKAS 223
|
Length = 231 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 3e-16
Identities = 61/247 (24%), Positives = 107/247 (43%), Gaps = 55/247 (22%)
Query: 1070 LVLRGLTCTFPGGMK--------------TGIVGRTGSGKSTLIQTLFRIVEPTAGEIVI 1115
L + L+ +P G + I+G +G+GKSTL++ + R+VEP++G I++
Sbjct: 2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILL 61
Query: 1116 DGINISSIGLHDLRS---RLSIIPQDPTMFEG-TV-RNNLDP-----------LEEYKDE 1159
+G +I+ + LR R+ +I Q + E TV N L L + +E
Sbjct: 62 EGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEE 121
Query: 1160 EIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEAT 1219
+ AL + V K R + S GQ+Q V + R L ++ +++ DE
Sbjct: 122 DKERAL---SALERV-GLADKAYQRA----DQLSGGQQQRVAIARALAQQPDLILADEPI 173
Query: 1220 ASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVID----------SDMVLLLSHGIIEE 1269
AS+D T + L++ I IT +I+ +D ++ L G I
Sbjct: 174 ASLDPKTSKQVMDYLKR-------INKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVF 226
Query: 1270 YDSPTKL 1276
+P++L
Sbjct: 227 DGAPSEL 233
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 5e-16
Identities = 62/228 (27%), Positives = 112/228 (49%), Gaps = 35/228 (15%)
Query: 1085 TGIVGRTGSGKSTLIQTLFRIVE-----PTAGEIVIDGINISSIGLHD--LRSRLSIIPQ 1137
T +G +G GKST ++ R+ + GE+ IDGI++ S+ + LR+++ ++ Q
Sbjct: 34 TAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQ 93
Query: 1138 DPTMFEGTVRNN------LDPLEEYK---DEEIWEALDKCQLGDEVRNKEGKLDSRVTEN 1188
P F ++ +N L L + K DE + ++L L +E L R+ ++
Sbjct: 94 KPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEE-------LGDRLKDS 146
Query: 1189 GENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVD----TATDNLIQQTLRQHFSDCTVI 1244
S GQ+Q +C+ R + K +L++DE +++D +NLIQ+ L+++F T+I
Sbjct: 147 AFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQE-LKKNF---TII 202
Query: 1245 TIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLVAEY 1291
+ H + SD V G I EY++ ++ +N SS Y
Sbjct: 203 VVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFKNPQSS---KTKRY 247
|
Length = 251 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.2 bits (204), Expect = 6e-16
Identities = 57/226 (25%), Positives = 98/226 (43%), Gaps = 43/226 (19%)
Query: 1070 LVLRGLTCTFPG-------------GMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVID 1116
L LRG++ +F G G ++G G+GKSTL++ L + P +GEI+ID
Sbjct: 9 LELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILID 68
Query: 1117 GINISSIGLHDLRSR-LSIIPQDPTMFEG-TVRNNL-------------DPLEEYKDEEI 1161
G ++ D + ++ + Q+ ++ +V N+ D +
Sbjct: 69 GKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRAR- 127
Query: 1162 WEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATAS 1221
E L + L + G L S+ QRQ+V + R L ++VL+LDE TA+
Sbjct: 128 -ELLARLGLDIDPDTLVGDL-----------SIAQRQMVEIARALSFDARVLILDEPTAA 175
Query: 1222 VDTA-TDNLIQQTLRQHFSDCTVITIAHRITSVID-SDMVLLLSHG 1265
+ T+ L R +I I+HR+ V + +D + +L G
Sbjct: 176 LTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDG 221
|
Length = 500 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 6e-16
Identities = 51/192 (26%), Positives = 89/192 (46%), Gaps = 25/192 (13%)
Query: 1057 ILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVID 1116
+ N+ ++ + +L L T G I+G +GSGKSTL+ + + + +G++ ++
Sbjct: 1 LKNISKKFGDKV--ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLN 58
Query: 1117 G---INISSIGLHDL-RSRLSIIPQDPTMFEG-TVRNNLDPLEEY-------KDEEIWEA 1164
G ++S R +L + Q+ + E TV NLD +Y K E+ EA
Sbjct: 59 GQETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEA 118
Query: 1165 LDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDT 1224
L+K L KL ++ E S G++Q V L R +LK +++ DE T S+D
Sbjct: 119 LEKVGL-------NLKLKQKIYE----LSGGEQQRVALARAILKPPPLILADEPTGSLDP 167
Query: 1225 ATDNLIQQTLRQ 1236
+ + L +
Sbjct: 168 KNRDEVLDLLLE 179
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.5 bits (193), Expect = 7e-16
Identities = 61/236 (25%), Positives = 113/236 (47%), Gaps = 26/236 (11%)
Query: 1072 LRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVE-----PTAGEIVIDGINI--SSIG 1124
L G++ F T ++G +G GKST ++ L R+ + GEI +G NI S +
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79
Query: 1125 LHDLRSRLSIIPQDPTMFEGTVRNNLD--------PLEEYKDEEIWEALDKCQLGDEVRN 1176
L +LR + ++ Q PT F +V +N+ +E D+ + E+L + + E ++
Sbjct: 80 LVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKD 139
Query: 1177 KEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQ 1236
+ N + +S GQ+Q +C+ R L + KV++LDE T+++D + + I++TL +
Sbjct: 140 N-------LDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLME 192
Query: 1237 HFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLVAEY 1291
T I + H + SD L +G + E ++ Q+ ++Y
Sbjct: 193 LKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFIAPKK---QITSDY 245
|
Length = 251 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 8e-16
Identities = 46/203 (22%), Positives = 91/203 (44%), Gaps = 32/203 (15%)
Query: 633 PTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK---------- 682
P L++++ KV G ++ + G G+GKS+L+ + + G +++ G
Sbjct: 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLR 81
Query: 683 ---AYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERG 739
+ Q P + SG I N+ P D + + A + E G
Sbjct: 82 SSLTIIPQDPTLFSGTIRSNL---DPFDEYSDEEIYGALRVS---------------EGG 123
Query: 740 INLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTH 799
+NLS GQ+Q + +ARAL + + + D+ +++D T L ++ + + T++ + H
Sbjct: 124 LNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYAT-DALIQKTIREEFTNSTILTIAH 182
Query: 800 QVEFLPAADLILVMKDGKITQAG 822
++ + D ILVM G++ +
Sbjct: 183 RLRTIIDYDKILVMDAGEVKEYD 205
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 8e-16
Identities = 47/185 (25%), Positives = 90/185 (48%), Gaps = 15/185 (8%)
Query: 1061 QVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINI 1120
QV Y +L ++ + G I G +G GKSTL++ + ++ PT+G ++ +G ++
Sbjct: 8 QVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDV 67
Query: 1121 SSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKE-- 1178
S++ R ++S Q P +F TV +NL I+ + + D +
Sbjct: 68 STLKPEAYRQQVSYCAQTPALFGDTVEDNL----------IFPWQIRNRRPDRAAALDLL 117
Query: 1179 ---GKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLR 1235
DS +T+N S G++Q + L R L K+L+LDE T+++D + I++ +
Sbjct: 118 ARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIH 177
Query: 1236 QHFSD 1240
++ +
Sbjct: 178 RYVRE 182
|
Length = 223 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.9 bits (194), Expect = 9e-16
Identities = 66/233 (28%), Positives = 108/233 (46%), Gaps = 40/233 (17%)
Query: 623 NFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSL---LSCIL------------- 666
N ++ P L +INL + G + + G GSGKS+L L+ +L
Sbjct: 6 NVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGID 65
Query: 667 -GEVPKISGTLKLCGTKAYVAQSPWIQ--SGNIEDNILFGK------PMD-REKYDRVLE 716
G+ K+ G KL G V Q+P Q +E+++ FG P++ R++ DR L
Sbjct: 66 TGDFSKLQGIRKLVGI---VFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALA 122
Query: 717 ACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHT 776
L+K LSGGQ Q + +A L + + +FD+ S +D +
Sbjct: 123 EIGLEKYRH-----------RSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDS 171
Query: 777 GSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILN 829
G + + + + KT++Y+TH +E L AD I+VM GKI G+ ++L+
Sbjct: 172 GIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLS 224
|
Length = 274 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 9e-16
Identities = 51/201 (25%), Positives = 90/201 (44%), Gaps = 50/201 (24%)
Query: 1086 GIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDPTMFEGT 1145
G+VG +G GKSTL + + + EPT+GEI+ +G +I+ +
Sbjct: 43 GLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKL---------------------- 80
Query: 1146 VRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKE-GKLDSRVTENGENWSMGQRQLVCLGR 1204
+E + E + E L+K L +E + +L S GQRQ + + R
Sbjct: 81 -------SKEERRERVLELLEKVGLPEEFLYRYPHEL-----------SGGQRQRIGIAR 122
Query: 1205 VLLKKSKVLVLDEATASVDTATD----NLIQQTLRQHFSDCTVITIAHRITSVID--SDM 1258
L K++V DE +++D + NL++ L++ T + I+H + SV+ SD
Sbjct: 123 ALALNPKLIVADEPVSALDVSVQAQILNLLKD-LQEELG-LTYLFISHDL-SVVRYISDR 179
Query: 1259 VLLLSHGIIEEYDSPTKLLEN 1279
+ ++ G I E ++ N
Sbjct: 180 IAVMYLGKIVEIGPTEEVFSN 200
|
Length = 268 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 1e-15
Identities = 47/187 (25%), Positives = 87/187 (46%), Gaps = 34/187 (18%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSI---GLHD 1127
L+ + G I+G +G+GKSTL+++L +V+PT+GEI+ +G+ I+ + L
Sbjct: 19 ALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRK 78
Query: 1128 LRSRLSIIPQDP------TMFE----------GTVRN--NLDPLEEYKDEEIWEALDKCQ 1169
LR + +I Q ++ E T R+ L E+ +AL++
Sbjct: 79 LRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQ--ALDALERVG 136
Query: 1170 LGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNL 1229
+ D+ + L S GQ+Q V + R L+++ K+++ DE AS+D +
Sbjct: 137 ILDKAYQRASTL-----------SGGQQQRVAIARALVQQPKIILADEPVASLDPESAKK 185
Query: 1230 IQQTLRQ 1236
+ L+
Sbjct: 186 VMDILKD 192
|
Length = 258 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 76.3 bits (189), Expect = 1e-15
Identities = 55/197 (27%), Positives = 92/197 (46%), Gaps = 33/197 (16%)
Query: 630 SNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSP 689
S +RD++ +V G V + G VG+G++ L + G P SG + L G K +SP
Sbjct: 11 SVKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDG-KPVTRRSP 69
Query: 690 --WIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQK 747
I++G + P DR++ VL+ LS + + LSGG +
Sbjct: 70 RDAIRAG------IAYVPEDRKREGLVLD----------LSVAENIALSSL---LSGGNQ 110
Query: 748 QRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRS-----KTVIYVTHQVE 802
Q++ +AR L +D + + D+P VD K + L+R K V+ ++ +++
Sbjct: 111 QKVVLARWLARDPRVLILDEPTRGVDVGA-----KAEIYRLIRELADAGKAVLLISSELD 165
Query: 803 FLPA-ADLILVMKDGKI 818
L D ILVM +G+I
Sbjct: 166 ELLGLCDRILVMYEGRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 1e-15
Identities = 57/210 (27%), Positives = 95/210 (45%), Gaps = 40/210 (19%)
Query: 1059 NLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGI 1118
NL V Y +L L+ + P G T ++G G GKSTL++ R++ P +G + +
Sbjct: 7 NLTVGYGTKR--ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDK 64
Query: 1119 NISSIGLHDLRSRLSIIPQDPTMFEG-TVRNNLDPLEEY--------------KDEEIWE 1163
IS + L RL+++PQ EG TVR L Y +D
Sbjct: 65 PISMLSSRQLARRLALLPQHHLTPEGITVRE----LVAYGRSPWLSLWGRLSAEDNARVN 120
Query: 1164 -ALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASV 1222
A+++ ++ + + ++ R+T+ S GQRQ L VL + + V++LDE T +
Sbjct: 121 QAMEQTRI-NHLADR------RLTD----LSGGQRQRAFLAMVLAQDTPVVLLDEPTTYL 169
Query: 1223 DTATD----NLIQQTLRQHFSDCTVITIAH 1248
D L+++ L TV+T+ H
Sbjct: 170 DINHQVELMRLMRE-LNTQGK--TVVTVLH 196
|
Length = 255 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.6 bits (194), Expect = 1e-15
Identities = 62/203 (30%), Positives = 111/203 (54%), Gaps = 26/203 (12%)
Query: 1087 IVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDP-TMFEG- 1144
I+G GSGKST ++ + ++E +G+I+IDG ++ + D+R ++ ++ Q+P F G
Sbjct: 38 IIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGA 97
Query: 1145 TVRNNLD--------PLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQ 1196
TV +++ P EE K E + EAL+ + D + +E +R+ S GQ
Sbjct: 98 TVEDDVAFGLENKGIPHEEMK-ERVNEALELVGMQD-FKERE---PARL-------SGGQ 145
Query: 1197 RQLVCLGRVLLKKSKVLVLDEATASVD-TATDNLIQ--QTLRQHFSDCTVITIAHRITSV 1253
+Q V + + + K+++LDEAT+ +D LI+ + +R + TVI+I H + V
Sbjct: 146 KQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDY-QMTVISITHDLDEV 204
Query: 1254 IDSDMVLLLSHGIIEEYDSPTKL 1276
SD VL++ +G +E +P +L
Sbjct: 205 ALSDRVLVMKNGQVESTSTPREL 227
|
Length = 279 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 2e-15
Identities = 41/174 (23%), Positives = 74/174 (42%), Gaps = 22/174 (12%)
Query: 1056 DILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVI 1115
I N+ Y +L L+ G + G+ G+GK+TL + L +++ ++G I++
Sbjct: 1 RIENISFSY-KKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILL 59
Query: 1116 DGINISSIGLHDLRSRLSIIPQDPT--MFEGTVRN----NLDPLEEYKDEEIWEALDKCQ 1169
+G I + + R + + QD +F +VR L L+ E+ L
Sbjct: 60 NGKPIKA---KERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGN-EQAETVLKDLD 115
Query: 1170 LGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVD 1223
L KE + + S GQ+Q + + LL +L+ DE T+ +D
Sbjct: 116 LYAL---KE--------RHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 2e-15
Identities = 62/204 (30%), Positives = 94/204 (46%), Gaps = 40/204 (19%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKI-SGTLKLCGTK----------- 682
L D+NL + G A+ G GSGKS+LL+ I+G + K SG + L G +
Sbjct: 14 LDDLNLTIEKGKMYAIIGESGSGKSTLLN-IIGLLEKFDSGQVYLNGQETPPLNSKKASK 72
Query: 683 ------AYVAQS-PWIQSGNIEDNILFG-------KPMDREKYDRVLEACSLKKDLEILS 728
Y+ Q+ I++ +E+N+ G K REK LE L L+
Sbjct: 73 FRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLK--- 129
Query: 729 FGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL 788
I E LSGG++QR+ +ARA+ + + L D+P ++D ++LL L
Sbjct: 130 ----QKIYE----LSGGEQQRVALARAILKPPPLILADEPTGSLDPKN-RDEVLDLLLEL 180
Query: 789 LRS-KTVIYVTHQVEFLPAADLIL 811
KT+I VTH E AD ++
Sbjct: 181 NDEGKTIIIVTHDPEVAKQADRVI 204
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.6 bits (192), Expect = 2e-15
Identities = 51/202 (25%), Positives = 89/202 (44%), Gaps = 38/202 (18%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSG 694
+ ++ + G + + G G GKS+L ILG SG + G
Sbjct: 29 VDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEG-------------- 74
Query: 695 NIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIAR 754
+D K RE+ +LE L ++ + + + LSGGQ+QRI IAR
Sbjct: 75 --KDITKLSKEERRERVLELLEKVGLPEEF-LYRYPHE---------LSGGQRQRIGIAR 122
Query: 755 ALYQDADIYLFDDPFSAVDAHTGS---HLFKEVLLGLLRSK---TVIYVTHQVEFLPA-A 807
AL + + + D+P SA+D + +L K+ L+ + T ++++H + + +
Sbjct: 123 ALALNPKLIVADEPVSALDVSVQAQILNLLKD-----LQEELGLTYLFISHDLSVVRYIS 177
Query: 808 DLILVMKDGKITQAGKYNDILN 829
D I VM GKI + G ++ +
Sbjct: 178 DRIAVMYLGKIVEIGPTEEVFS 199
|
Length = 268 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.3 bits (193), Expect = 2e-15
Identities = 61/238 (25%), Positives = 115/238 (48%), Gaps = 31/238 (13%)
Query: 1072 LRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRI--------VEPTAGEIVIDGINI--S 1121
L ++ P T ++G +G GKST ++ + R+ VE GE+ G N+ +
Sbjct: 55 LDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVE---GELTFRGKNVYDA 111
Query: 1122 SIGLHDLRSRLSIIPQDPTMFEGTVRNN------LDPLEEYKDEEIWEALDKCQLGDEVR 1175
+ LR R+ ++ Q P F ++ +N + + DE + E+L + L DEV+
Sbjct: 112 DVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVK 171
Query: 1176 NKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLR 1235
++ LDS +G + S GQ+Q +C+ R + +V+++DE +++D + I+ +
Sbjct: 172 DQ---LDS----SGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIE 224
Query: 1236 QHFSDCTVITIAHRITSV--IDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLVAEY 1291
+ + TV+ + H + I + L+ G + E+D K+ EN S Q V +Y
Sbjct: 225 ELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIFENPES---QRVEDY 279
|
Length = 285 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 2e-15
Identities = 57/211 (27%), Positives = 98/211 (46%), Gaps = 36/211 (17%)
Query: 1059 NLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRI-----VEPTAGEI 1113
L Y L ++ F T ++G +G GKST ++ L R+ GEI
Sbjct: 11 GLSFFYGDFQ--ALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEI 68
Query: 1114 VIDGINISSIGLH--DLRSRLSIIPQDPTMFEGTVRNNL----------DPLEEYKDEEI 1161
++DG NI + +LR R+ ++ Q P F ++ N+ D + Y E +
Sbjct: 69 LLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKD--KAYLAERV 126
Query: 1162 WEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATAS 1221
+L L DEV++ R+ E+ S GQ+Q +C+ R L + +VL++DE ++
Sbjct: 127 ERSLRHAALWDEVKD-------RLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASA 179
Query: 1222 VD-TAT---DNLIQQTLRQHFSDCTVITIAH 1248
+D AT + LI + L+ + T+I + H
Sbjct: 180 LDPIATQKIEELIHE-LKARY---TIIIVTH 206
|
Length = 253 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.4 bits (190), Expect = 2e-15
Identities = 55/231 (23%), Positives = 101/231 (43%), Gaps = 23/231 (9%)
Query: 1072 LRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVE--PTA---GEIVIDGINI--SSIG 1124
L+G++ +G +G GKST ++ R+ + P GEI IDG NI +
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78
Query: 1125 LHDLRSRLSIIPQDPTMFEGTVRNNLD--------PLEEYKDEEIWEALDKCQLGDEVRN 1176
+ +LR + ++ Q P F ++ N+ + + + E L L DEV++
Sbjct: 79 VDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKD 138
Query: 1177 KEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQ 1236
K + E+ S GQ+Q +C+ R + VL++DE +++D + +++ + +
Sbjct: 139 K-------LKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHE 191
Query: 1237 HFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENKSSSFAQ 1286
D T++ + H + SD G + EYD K+ N Q
Sbjct: 192 LKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFTNPEKEATQ 242
|
Length = 250 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 79.0 bits (195), Expect = 2e-15
Identities = 69/266 (25%), Positives = 110/266 (41%), Gaps = 48/266 (18%)
Query: 1057 ILNLQVRYAPH-LPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVI 1115
R L T PG T I GR+GSGK+TLI+ + + P GEIV+
Sbjct: 2 SARFSKRLGDFSLDADF-----TLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVL 56
Query: 1116 DGINISS----IGLHDLRSRLSIIPQDPTMFEG-TVRNNLD--------PLEEYKDEEIW 1162
+G + I L + R+ + Q+ +F +VR NL E +
Sbjct: 57 NGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVI 116
Query: 1163 EALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASV 1222
E L +G + G+L S G++Q V +GR LL ++L++DE A++
Sbjct: 117 ELLG---IGHLLGRLPGRL-----------SGGEKQRVAIGRALLSSPRLLLMDEPLAAL 162
Query: 1223 DTATDNLIQ---QTLRQHFSDCTVITIAHRITSVI---DSDMVL----LLSHGIIEEY-- 1270
D I + L F ++ ++H + V+ D +VL + + G I E
Sbjct: 163 DDPRKYEILPYLERLHAEF-GIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWA 221
Query: 1271 --DSPTKLLENKSSSFAQLVAEYTQR 1294
D P E++ S +VAE+ Q
Sbjct: 222 SPDLPWLAREDQGSLIEGVVAEHDQH 247
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.0 bits (189), Expect = 2e-15
Identities = 59/225 (26%), Positives = 112/225 (49%), Gaps = 23/225 (10%)
Query: 1062 VRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAG-----EIVID 1116
V + H VL+ + FP T I+G +G GKSTL++ L R+ + +G +++D
Sbjct: 10 VNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLD 69
Query: 1117 GINISSIGLH--DLRSRLSIIPQDPTMFEGTVRNNLD--------PLEEYKDEEIWEALD 1166
NI S L +LR R+ ++ Q P F ++ +N+ + DE + ++L
Sbjct: 70 NENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLR 129
Query: 1167 KCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTAT 1226
+ L DEV++ + ++G S GQ+Q +C+ RVL + +V+++DE +++D +
Sbjct: 130 QAALWDEVKDN-------LHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVS 182
Query: 1227 DNLIQQTLRQHFSDCTVITIAHRITSVI-DSDMVLLLSHGIIEEY 1270
I++ +++ + T+ + H + SD L G + EY
Sbjct: 183 TMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEY 227
|
Length = 251 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 2e-15
Identities = 41/170 (24%), Positives = 71/170 (41%), Gaps = 14/170 (8%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS 1130
+ GL+ T G + G G GK+TL++ L ++ P +GE+ +G ++ R+
Sbjct: 15 LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRN 74
Query: 1131 RLSIIPQDPTMFEGTVRNNLD---PLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTE 1187
L + E + NL + I +AL L +L
Sbjct: 75 ILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQL------ 128
Query: 1188 NGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQH 1237
S GQ++ + L R+ L ++ + +LDE T ++D A L+ LR H
Sbjct: 129 -----SAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAH 173
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.1 bits (190), Expect = 3e-15
Identities = 57/229 (24%), Positives = 112/229 (48%), Gaps = 33/229 (14%)
Query: 1072 LRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRI-----VEPTAGEIVIDGINISS--IG 1124
++G+ F T ++G +GSGKST +++L R+ + G+I+ GI+I+ I
Sbjct: 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95
Query: 1125 LHDLRSRLSIIPQDPTMFEGTVRNNLD-PLE-------EYKDEEIWEALDKCQLGDEVRN 1176
++++R + ++ Q P F ++ N+ LE + DE + +L + L D+V++
Sbjct: 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKD 155
Query: 1177 KEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQ 1236
K S +T +G GQ+Q +C+ R + K +L++DE +++D + +++T+ +
Sbjct: 156 DLHK--SALTLSG-----GQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFE 208
Query: 1237 HFSDCTVITIAH------RITSVIDSDMVLLLSHGIIEEYDSPTKLLEN 1279
+ T+I + H R SD G + EYD + N
Sbjct: 209 LKKNYTIIIVTHNMQQAARA-----SDYTAFFYLGDLIEYDKTRNIFTN 252
|
Length = 267 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 3e-15
Identities = 52/206 (25%), Positives = 88/206 (42%), Gaps = 26/206 (12%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSG 694
+RD++ + G + G G+GK++LL I + SG + + G + P
Sbjct: 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDT--VRDPSFVRR 75
Query: 695 NIEDNILFGKPMDREKYDRV--------------LEACSLKKDLEILS--FGDQTVIGER 738
I +LFG +R Y R+ L +K + LS + R
Sbjct: 76 KI--GVLFG---ERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRR 130
Query: 739 GINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRS-KTVIYV 797
S G KQ++ IARAL D I + D+P S +D T F + + L + VI+
Sbjct: 131 VGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRT-RRKFHDFIKQLKNEGRAVIFS 189
Query: 798 THQVEFLPA-ADLILVMKDGKITQAG 822
+H ++ + A D ++V+ G++ G
Sbjct: 190 SHIMQEVEALCDRVIVLHKGEVVLEG 215
|
Length = 245 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 79.9 bits (198), Expect = 3e-15
Identities = 53/214 (24%), Positives = 97/214 (45%), Gaps = 43/214 (20%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPW--IQ 692
D++L V G A+ G G+GKS+L+ + G SG +++ G + + SP I+
Sbjct: 20 NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIK-SPRDAIR 78
Query: 693 SG--------------NIEDNILFGKPMD----------REKYDRVLEACSLKKDLEILS 728
G + +NI+ G R + + E L D +
Sbjct: 79 LGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPD--- 135
Query: 729 FGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL 788
+ + LS G++QR++I +ALY+ A + + D+P + + LF +L
Sbjct: 136 ----AKVAD----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELF--EILRR 185
Query: 789 LRS--KTVIYVTHQV-EFLPAADLILVMKDGKIT 819
L + KT+I++TH++ E + AD + V++ GK+
Sbjct: 186 LAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVV 219
|
Length = 501 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 3e-15
Identities = 61/193 (31%), Positives = 89/193 (46%), Gaps = 39/193 (20%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK----------AY 684
LRD + V G A+ G GSGKS+L ++G V SG + + G AY
Sbjct: 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAY 82
Query: 685 VAQSP---WIQSGNIEDNILFG-----------KPMDREKYDRVLEACSLKKDLEILSFG 730
V QS W +ED ++ G K DR+ L ++++ F
Sbjct: 83 VPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALAR------VDMVEFR 136
Query: 731 DQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLR 790
+ IGE LSGGQK+R+ +ARA+ Q + L D+PF+ VD T + + LL LR
Sbjct: 137 HRQ-IGE----LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIIS--LLRELR 189
Query: 791 S--KTVIYVTHQV 801
KT++ TH +
Sbjct: 190 DEGKTMLVSTHNL 202
|
Length = 272 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 4e-15
Identities = 56/228 (24%), Positives = 109/228 (47%), Gaps = 30/228 (13%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS 1130
L + P G ++G +GSGKSTL++ + + +P +G I ++G + + + D
Sbjct: 15 ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARD--R 72
Query: 1131 RLSIIPQDPTMFEG-TVRNNL---------DPLE-EYKDEEIWEALDKCQLGDEVRNKEG 1179
++ + Q +F+ TVR+N+ + + + EE+ E + LGD N+
Sbjct: 73 KIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQ-- 130
Query: 1180 KLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQ--H 1237
S GQRQ V L R L + +VL+LDE ++D ++ LR+
Sbjct: 131 ------------LSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHD 178
Query: 1238 FSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENKSSSF 1284
T + + H ++ +D ++++S+G IE+ SP ++ ++ ++ F
Sbjct: 179 EVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDHPANPF 226
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 4e-15
Identities = 62/245 (25%), Positives = 107/245 (43%), Gaps = 34/245 (13%)
Query: 1055 VDILNLQVRYAPHLPL---VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAG 1111
+ + N + PL L GL+ G ++G G+GKSTL+ + ++PT+G
Sbjct: 2 ISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSG 61
Query: 1112 EIVIDGINISSIGLHDLRSRLSIIPQDP---TMFEGTVRNNL--------------DPLE 1154
+I+IDG++++ + + L+ + QDP T E T+ NL E
Sbjct: 62 QILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNE 121
Query: 1155 EYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLV 1214
+ E L + LG E R L R+ S GQRQ + L L K+L+
Sbjct: 122 RRRSSFR-ERLARLGLGLENR-----LSDRI----GLLSGGQRQALSLLMATLHPPKILL 171
Query: 1215 LDEATASVDTATDNLIQQTLRQHFSD--CTVITIAHRITSVID--SDMVLLLSHGIIEEY 1270
LDE TA++D T + + + + T + + H + +D + +++L S I+ +
Sbjct: 172 LDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDV 231
Query: 1271 DSPTK 1275
K
Sbjct: 232 TGEEK 236
|
Length = 263 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 5e-15
Identities = 55/192 (28%), Positives = 101/192 (52%), Gaps = 22/192 (11%)
Query: 1072 LRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVE--P---TAGEIVIDGINI--SSIG 1124
L+ + T +G +G GKSTL++T R+ E P GEI++DG NI
Sbjct: 29 LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88
Query: 1125 LHDLRSRLSIIPQDPTMFEGTVRNNL-------DPLEEYK-DEEIWEALDKCQLGDEVRN 1176
+ LR+++ ++ Q PT F ++ +N+ + L + DE + AL K L +EV++
Sbjct: 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKD 148
Query: 1177 KEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQ 1236
K + ++G + S GQ+Q +C+ R + + +VL+LDE +++D + I++ + +
Sbjct: 149 K-------LHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITE 201
Query: 1237 HFSDCTVITIAH 1248
D TV+ + H
Sbjct: 202 LKQDYTVVIVTH 213
|
Length = 260 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.8 bits (186), Expect = 5e-15
Identities = 49/178 (27%), Positives = 96/178 (53%), Gaps = 19/178 (10%)
Query: 1085 TGIVGRTGSGKSTLIQTLFRIVEPTA---GEIVIDGINISSIGLHDLRSRLSIIPQDPTM 1141
T ++G +G GKST ++ R+ + A G + I+G ++ + + LR + ++ Q P +
Sbjct: 31 TALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNV 90
Query: 1142 FEGTVRNN------LDPLEEYKDEE---IWEALDKCQLGDEVRNKEGKLDSRVTENGENW 1192
F ++ N L + + KDEE + + L K L +EV++K + +N
Sbjct: 91 FVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDK-------LKQNALAL 143
Query: 1193 SMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRI 1250
S GQ+Q +C+ R L K K+L+LDE T+++D + +I++ L++ + ++I + H +
Sbjct: 144 SGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNM 201
|
Length = 246 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 6e-15
Identities = 67/211 (31%), Positives = 106/211 (50%), Gaps = 40/211 (18%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK-ISGTLKLCGT------------ 681
L+ I+L ++ G VA+ G GSGKS+L++ ILG + K SGT ++ G
Sbjct: 24 LKGISLDIYAGEMVAIVGASGSGKSTLMN-ILGCLDKPTSGTYRVAGQDVATLDADALAQ 82
Query: 682 ----------KAYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGD 731
+ Y S + N+E ++ E+ R+L A L L+ L D
Sbjct: 83 LRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA---GLERKQRLLRAQEL---LQRLGLED 136
Query: 732 QTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL--LGLL 789
+ + + LSGGQ+QR+ IARAL + L D+P A+D+H+G +EV+ L L
Sbjct: 137 R--VEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSG----EEVMAILHQL 190
Query: 790 RSK--TVIYVTHQVEFLPAADLILVMKDGKI 818
R + TVI VTH + A+ ++ ++DG+I
Sbjct: 191 RDRGHTVIIVTHDPQVAAQAERVIEIRDGEI 221
|
Length = 648 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 6e-15
Identities = 53/181 (29%), Positives = 81/181 (44%), Gaps = 22/181 (12%)
Query: 1066 PHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDG--INISSI 1123
P P VL+GL G ++G G+GKSTL+ L ++ P +G ++IDG ++ S
Sbjct: 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRK 61
Query: 1124 GLHDLRSRLSIIPQDP--TMFEGTVRN-------NLDPLEEYKDEEIWEALDKCQLGDEV 1174
GL + R R+ ++ QDP +F V NL E + + EAL
Sbjct: 62 GLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASG-- 119
Query: 1175 RNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTL 1234
L R T S G+++ V + + + VL+LDE TA +D A + L
Sbjct: 120 ------LRERPT---HCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAIL 170
Query: 1235 R 1235
R
Sbjct: 171 R 171
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.3 bits (187), Expect = 7e-15
Identities = 64/237 (27%), Positives = 117/237 (49%), Gaps = 27/237 (11%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAG-----EIVIDGINISSI-G 1124
VL ++ FP T ++G TGSGK+T ++TL R+ + +G ++++ G +I +
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 1125 LHDLRSRLSIIPQDPTMFEGTVRNN---------LDPLEEYKDEEIWEA-LDKCQLGDEV 1174
+ + R R+ ++ Q P F ++ +N L P +E++ + +A L + L D V
Sbjct: 96 VLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRG--VAQARLTEVGLWDAV 153
Query: 1175 RNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTL 1234
++ R++++ S GQ+QL+CL R L +VL+LDE T+++D T I++ +
Sbjct: 154 KD-------RLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFI 206
Query: 1235 RQHFSDCTVITIAHRITSV--IDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLVA 1289
R TVI + H + I L ++EE + K + A+ VA
Sbjct: 207 RSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSSPKHAETARYVA 263
|
Length = 276 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 8e-15
Identities = 64/209 (30%), Positives = 101/209 (48%), Gaps = 27/209 (12%)
Query: 1072 LRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDG--INISSIGLHDLR 1129
L+G+ G T I+G G+GKSTL Q L I++P++G I+ DG I+ S GL LR
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLR 81
Query: 1130 SRLSIIPQDP--TMFEGTVRN-------NLDPLEEYKDEEIWEALDKCQLGDEVRNKEGK 1180
+ ++ QDP +F +V NL E+ + + AL + + + +++K
Sbjct: 82 ESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGI-EHLKDKP-- 138
Query: 1181 LDSRVTENGENW-SMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLR--QH 1237
+ S GQ++ V + VL+ + KVLVLDE TA +D + I + L Q
Sbjct: 139 ---------THCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQK 189
Query: 1238 FSDCTVITIAHRITSV-IDSDMVLLLSHG 1265
T+I H I V + D V ++ G
Sbjct: 190 ELGLTIIIATHDIDIVPLYCDNVFVMKEG 218
|
Length = 283 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.5 bits (185), Expect = 1e-14
Identities = 60/232 (25%), Positives = 111/232 (47%), Gaps = 23/232 (9%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVID------GINISSIG 1124
+L+ +T P GI+G +GSGKSTL++ L R++E +I +D G +I I
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84
Query: 1125 LHDLRSRLSIIPQDPTMFEG-TVRNNLD-PLEEYKDEE-------IWEALDKCQLGDEVR 1175
LR + ++ Q P F ++ +N+ PL+ + +E + E L K L EV
Sbjct: 85 AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVY 144
Query: 1176 NKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLR 1235
+ R+ S GQ+Q + + R L K KVL++DE T+ +D I++ +
Sbjct: 145 D-------RLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLIT 197
Query: 1236 QHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENKSSSFAQ 1286
+ ++ ++ ++H V +D V L +G + E+ S ++ + + +
Sbjct: 198 ELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSPKNELTE 249
|
Length = 257 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 2e-14
Identities = 38/127 (29%), Positives = 53/127 (41%), Gaps = 23/127 (18%)
Query: 659 SSLLSCILGEVPKISGTLKLCGTK--------------AYVAQSPWIQSGN-IEDNILFG 703
S+LL I G + SGT+ L G V Q P + + +N+ FG
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 704 KPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIY 763
R EA + + F D+ E LSGGQKQR+ IARAL + +
Sbjct: 61 LRDKEAD-ARAEEALE---RVGLPDFLDR----EPVGTLSGGQKQRVAIARALLKKPKLL 112
Query: 764 LFDDPFS 770
L D+P +
Sbjct: 113 LLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 75.6 bits (186), Expect = 2e-14
Identities = 58/216 (26%), Positives = 106/216 (49%), Gaps = 27/216 (12%)
Query: 1087 IVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDPTMF-EGT 1145
++G +G GK+TL++ L +P +G I++DG +++++ H LR ++++ Q +F T
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPH-LRH-INMVFQSYALFPHMT 58
Query: 1146 VRNNLD-PLEEYK------DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQ 1198
V N+ L+ K + EAL QL + K +L S GQ+Q
Sbjct: 59 VEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQL-----------SGGQQQ 107
Query: 1199 LVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLR--QHFSDCTVITIAHRITSVID- 1255
V L R L+ K K+L+LDE +++D + +Q L+ Q T + + H +
Sbjct: 108 RVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTM 167
Query: 1256 SDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLVAEY 1291
SD + ++ G I + +P ++ E ++ F VA +
Sbjct: 168 SDRIAIMRKGKIAQIGTPEEIYEEPANLF---VARF 200
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.8 bits (184), Expect = 2e-14
Identities = 63/214 (29%), Positives = 98/214 (45%), Gaps = 29/214 (13%)
Query: 611 GSSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCI----- 665
S ET IE D N + + L D+++ + A+ G G GKS+ L CI
Sbjct: 34 SSGETVIEARDLNVFYG---DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMND 90
Query: 666 LGEVPKISGTLKLCGTKAY---------------VAQSPWIQSGNIEDNILFG-KPMDR- 708
L + ++ G L G Y V Q P +I DN+ +G K
Sbjct: 91 LIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYD 150
Query: 709 EKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDP 768
D +E SL++ DQ + G++LSGGQ+QR+ IARA+ D ++ L D+P
Sbjct: 151 GDIDERVEE-SLRRAALWDEVKDQ--LDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEP 207
Query: 769 FSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVE 802
SA+D S + ++++ L TV+ VTH ++
Sbjct: 208 ASALDPVATSKI-EDLIEELAEEYTVVIVTHNMQ 240
|
Length = 285 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 2e-14
Identities = 53/234 (22%), Positives = 102/234 (43%), Gaps = 23/234 (9%)
Query: 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIV 1114
+++ +L Y +R ++ G TG++G G+GK+TL++ + ++ P +G++
Sbjct: 2 LEVTDLTKSYGS-KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVT 60
Query: 1115 IDGINISSIGLHDLRSRLSIIP-QDPTMFEGTVRNNL-------DPLEEYKDEEIWEALD 1166
IDG++ +R ++ ++ + T R NL + I E
Sbjct: 61 IDGVDTVRDPS-FVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSK 119
Query: 1167 KCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTAT 1226
+ QL + LD RV E +S G +Q V + R L+ +LVLDE T+ +D T
Sbjct: 120 RLQLLE-------YLDRRVGE----FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRT 168
Query: 1227 DNLIQQTLRQHFSDCTVITIAHRITSVIDS--DMVLLLSHGIIEEYDSPTKLLE 1278
++Q ++ + + I +++ D V++L G + S L
Sbjct: 169 RRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDA 222
|
Length = 245 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 74.8 bits (184), Expect = 2e-14
Identities = 71/223 (31%), Positives = 109/223 (48%), Gaps = 50/223 (22%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCI-LGEVPKISGTLKLC-----GTKAYVAQS 688
L I+L+V G VA+ G GSGK++LL CI L E P+ +GT+++ ++ Q
Sbjct: 19 LHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPE-AGTIRVGDITIDTARSLSQQK 77
Query: 689 PWI-----------QSGNI------EDNILFG----KPMDREKYDRVLEACSLKKDL--E 725
I Q+ N+ +NI+ G K +E EA + ++L +
Sbjct: 78 GLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKE------EATARARELLAK 131
Query: 726 ILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL 785
+ G +T R LSGGQ+QR+ IARAL ++ LFD+P SA+D L EV
Sbjct: 132 VGLAGKETSYPRR---LSGGQQQRVAIARALAMRPEVILFDEPTSALD----PELVGEV- 183
Query: 786 LGLLRS-----KTVIYVTHQVEFL-PAADLILVMKDGKITQAG 822
L +R +T++ VTH++ F AD + M G+I + G
Sbjct: 184 LNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQG 226
|
Length = 250 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 2e-14
Identities = 64/236 (27%), Positives = 116/236 (49%), Gaps = 24/236 (10%)
Query: 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIV 1114
+ + ++ RY L+ ++ + G IVG GSGKSTL + L ++ P AG I
Sbjct: 6 IRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTIT 65
Query: 1115 IDGINISSIGLHDLRSRLSIIPQDP-TMFEG-TVR--------NNLDPLEEYKDEEIWEA 1164
+ G+ +S + D+R ++ ++ Q+P F G TV+ N P EE E + +A
Sbjct: 66 VGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMV-ERVDQA 124
Query: 1165 LDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDT 1224
L + + D + + +L S GQ+Q V + VL + +++LDEAT+ +D
Sbjct: 125 LRQVGMEDFLNREPHRL-----------SGGQKQRVAIAGVLALQPDIIILDEATSMLDP 173
Query: 1225 ATDNLIQQTLRQ--HFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLE 1278
+ +T+RQ TV++I H + +D V++++ G I E +P ++ +
Sbjct: 174 RGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFK 229
|
Length = 279 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.6 bits (186), Expect = 2e-14
Identities = 65/254 (25%), Positives = 115/254 (45%), Gaps = 49/254 (19%)
Query: 1072 LRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRI------------VEPTAGEIVIDGIN 1119
L+G++ P T ++G +G GKST ++ L R+ VE +I DG+N
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 1120 ISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLD--PL------------------EEYKDE 1159
L +LR R+ ++ Q P F ++R N+ P ++ +DE
Sbjct: 121 -----LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDE 175
Query: 1160 EIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEAT 1219
+ +L + L DEV + R+ +N S GQ+Q +C+ R L +V+++DE
Sbjct: 176 LVERSLRQAALWDEVND-------RLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPA 228
Query: 1220 ASVDTATDNLIQQTLRQHFSDCTVITIAHRITSV--IDSDMVLLLSHGIIEEYDSPTKLL 1277
+++D + I+ + + + TV+ + H + I + L+ G + EYD K+
Sbjct: 229 SALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVEYDDTDKIF 288
Query: 1278 ENKSSSFAQLVAEY 1291
EN S Q V +Y
Sbjct: 289 ENPES---QRVEDY 299
|
Length = 305 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 3e-14
Identities = 65/213 (30%), Positives = 100/213 (46%), Gaps = 31/213 (14%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--------KAYVA 686
L+ +NL + G +++ G G GKS+LL+ I G SG + L G + V
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60
Query: 687 QS----PWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILS-----FGDQTVIGE 737
Q+ PW+ + +NI DRVL S + I+ G +
Sbjct: 61 QNYSLLPWL---TVRENIALA-------VDRVLPDLSKSERRAIVEEHIALVGLTEAADK 110
Query: 738 RGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSK--TVI 795
R LSGG KQR+ IARAL + L D+PF A+DA T +L +E L+ + TV+
Sbjct: 111 RPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNL-QEELMQIWEEHRVTVL 169
Query: 796 YVTHQV-EFLPAADLILVMKDGKITQAGKYNDI 827
VTH V E L +D ++++ +G G+ ++
Sbjct: 170 MVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 3e-14
Identities = 48/165 (29%), Positives = 80/165 (48%), Gaps = 23/165 (13%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS 1130
VL G+ + G G+VG G+GK+TL++ + + PTAG +++ G ++ ++
Sbjct: 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASR 77
Query: 1131 RLSIIPQDPTM-FEGTVR-----------NNLDPLEEYKDEEIWEALDKCQLGDEVRNKE 1178
R++ +PQD ++ FE VR + D E + A+++ +
Sbjct: 78 RVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFA---- 133
Query: 1179 GKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVD 1223
D VT S G+RQ V L R L + + VL+LDE TAS+D
Sbjct: 134 ---DRPVTS----LSGGERQRVLLARALAQATPVLLLDEPTASLD 171
|
Length = 402 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 3e-14
Identities = 62/224 (27%), Positives = 105/224 (46%), Gaps = 27/224 (12%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGE---IVIDGINISSIGLHD 1127
L ++ + P G T ++G GSGKST+ + + ++ P I +DGI +++ + D
Sbjct: 22 ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWD 81
Query: 1128 LRSRLSIIPQDP-TMFEG-TV--------RNNLDPLEEYKDEEIWEALDKCQLGDEVRNK 1177
+R ++ I+ Q+P F G TV N P E ++ +V
Sbjct: 82 IREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMI-----------KIVRDVLAD 130
Query: 1178 EGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQH 1237
G LD +E N S GQ+Q V + +L + K+++LDE+T+ +D A I + +R+
Sbjct: 131 VGMLDYIDSEP-ANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKL 189
Query: 1238 FSD--CTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLEN 1279
TVI+I H I +D VL+L G + SP ++
Sbjct: 190 KKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSK 233
|
Length = 282 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 3e-14
Identities = 53/217 (24%), Positives = 97/217 (44%), Gaps = 33/217 (15%)
Query: 1066 PHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGL 1125
P+ L G+ + G +VG +G+GKSTL++ +++ PT+G I ++G ++S L
Sbjct: 11 PNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVS--DL 68
Query: 1126 HD-----LRSRLSIIPQDPTMF-EGTVRNNLD-PLE--EYKDEEIWE----ALDKCQLGD 1172
LR ++ ++ QD + + V N+ LE EI + AL+ L
Sbjct: 69 RGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSH 128
Query: 1173 EVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQ 1232
+ R +L S G++Q V + R ++ +L+ DE T ++D T I
Sbjct: 129 KHRALPAEL-----------SGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMN 177
Query: 1233 TLRQ-HFSDCTVITIAHRITSVIDSDMVLLLSHGIIE 1268
L++ + + TV+ H ++V H +I
Sbjct: 178 LLKKINKAGTTVVVATH------AKELVDTTRHRVIA 208
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 3e-14
Identities = 65/216 (30%), Positives = 99/216 (45%), Gaps = 28/216 (12%)
Query: 1078 TFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS-RLSIIP 1136
T G I+G GSGKSTL + L ++EPT+GEI+I+ + G + RS R+ +I
Sbjct: 35 TLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPL-HFGDYSFRSKRIRMIF 93
Query: 1137 QDP-----------TMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRV 1185
QDP + + +R N D E + ++I+E L G L
Sbjct: 94 QDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMV----------GLLPDHA 143
Query: 1186 TENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTAT-DNLIQQTLR-QHFSDCTV 1243
+ GQ+Q V L R L+ + K+++ DEA AS+D + LI L Q +
Sbjct: 144 NYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISY 203
Query: 1244 ITIAHRITSVID--SDMVLLLSHGIIEEYDSPTKLL 1277
I + I +I SD VL++ G + E S +L
Sbjct: 204 IYVTQHI-GMIKHISDQVLVMHEGEVVERGSTADVL 238
|
Length = 267 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 4e-14
Identities = 53/199 (26%), Positives = 95/199 (47%), Gaps = 14/199 (7%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS 1130
+LR ++ + P G T ++G TGSGKSTL+Q+L E + G + + RS
Sbjct: 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE------------RS 722
Query: 1131 RLSIIPQDPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGE 1190
++ +PQ + TVR N+ +E + +A+ QL ++ G L++ + E G
Sbjct: 723 -IAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGV 781
Query: 1191 NWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLI-QQTLRQHFSDCTVITIAHR 1249
N S GQ+ V L R + V +LD+ +++D + ++ + T + H+
Sbjct: 782 NLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQ 841
Query: 1250 ITSVIDSDMVLLLSHGIIE 1268
+ V +D V+ L G +E
Sbjct: 842 VHVVPRADYVVALGDGRVE 860
|
Length = 1560 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.4 bits (189), Expect = 4e-14
Identities = 56/219 (25%), Positives = 96/219 (43%), Gaps = 45/219 (20%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSP--WIQ 692
+RD++ V G + + G VG+G++ L + G P SG + L G K +SP I+
Sbjct: 275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDG-KPVRIRSPRDAIK 333
Query: 693 SG-----------------NIEDNILF--------GKPMDREKYDRVLEACSLKKDLEIL 727
+G +I +NI +DR K + E + L I
Sbjct: 334 AGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAER--YIRRLRIK 391
Query: 728 SFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLG 787
+ + IG LSGG +Q++ +AR L D + + D+P +D K +
Sbjct: 392 TPSPEQPIG----TLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGA-----KAEIYR 442
Query: 788 LLRS-----KTVIYVTHQV-EFLPAADLILVMKDGKITQ 820
L+R K ++ ++ ++ E L +D ILVM++G+I
Sbjct: 443 LIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVG 481
|
Length = 500 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.4 bits (189), Expect = 4e-14
Identities = 61/225 (27%), Positives = 105/225 (46%), Gaps = 42/225 (18%)
Query: 1070 LVLRGLTCTFPG-------------GMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVID 1116
L +RG+T FPG G ++G G+GKSTL++ LF + +P +GEI +D
Sbjct: 5 LEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVD 64
Query: 1117 G--INISSIGLHDLRSRLSIIPQDPTMFEG-TVRNNL--------DPLEEYKD--EEIWE 1163
G + I S +R + ++ Q + TV N+ L + + I E
Sbjct: 65 GKEVRIKSPR-DAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKE 123
Query: 1164 ALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASV- 1222
+ + G V D++V + S+G++Q V + + L + +++L+LDE TA +
Sbjct: 124 LSE--RYGLPV-----DPDAKV----ADLSVGEQQRVEILKALYRGARLLILDEPTAVLT 172
Query: 1223 DTATDNLIQQTLRQ-HFSDCTVITIAHRITSVID-SDMVLLLSHG 1265
D L + LR+ T+I I H++ V+ +D V +L G
Sbjct: 173 PQEADELF-EILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRG 216
|
Length = 501 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.5 bits (180), Expect = 4e-14
Identities = 61/226 (26%), Positives = 107/226 (47%), Gaps = 24/226 (10%)
Query: 1072 LRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVE--PTA---GEIVIDGINISSIGLH 1126
L+G+ F T ++G +G GKST ++TL R+ + P G + + G NI +
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 1127 --DLRSRLSIIPQDPTMFEGTVRNN------LDPLEEYK--DEEIWEALDKCQLGDEVRN 1176
LR ++ ++ Q P F ++ N L +++ DE + +L + + DEV++
Sbjct: 81 VVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKD 140
Query: 1177 KEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQ 1236
+ E+ + S GQ+Q VC+ RVL K V++LDE T+++D + I+ L +
Sbjct: 141 H-------LHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLE 193
Query: 1237 HFSDCTVITIAHRI--TSVIDSDMVLLLSHGIIEEYDSPTKLLENK 1280
T+I + H + S I L+ +IE D+ L K
Sbjct: 194 LRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMFLNPK 239
|
Length = 252 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 5e-14
Identities = 69/246 (28%), Positives = 111/246 (45%), Gaps = 39/246 (15%)
Query: 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 676
IE+ + F + TL D++ V G +++ G GSGKS+ + I G + SG +
Sbjct: 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64
Query: 677 KLCGTK-------------AYVAQSPWIQ--SGNIEDNILFG---KPMDREKY-DRVLEA 717
+ G V Q+P Q +ED++ FG K + E+ +RV EA
Sbjct: 65 IIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEA 124
Query: 718 CSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTG 777
L + + F ++ LSGGQKQR+ IA A+ I + D+ S +D
Sbjct: 125 LEL---VGMQDFKER-----EPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGR 176
Query: 778 SHLFKEVLLGLLRSK---TVIYVTHQVEFLPAADLILVMKDGKITQA-------GKYNDI 827
L K + +R TVI +TH ++ + +D +LVMK+G++ + ND+
Sbjct: 177 LELIKTI--KGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSRGNDL 234
Query: 828 LNSGTD 833
L G D
Sbjct: 235 LQLGLD 240
|
Length = 279 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 5e-14
Identities = 66/229 (28%), Positives = 116/229 (50%), Gaps = 25/229 (10%)
Query: 1072 LRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDL--- 1128
L ++ P G G++G +G+GKSTLI+ + + PT+G +++DG +++++ +L
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80
Query: 1129 RSRLSIIPQDPTMFEG-TVRNNLD-PLE------EYKDEEIWEALDKCQLGDEVRNKEGK 1180
R ++ +I Q + TV N+ PLE + ++ E L LGD K
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGD-------K 133
Query: 1181 LDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQ--HF 1238
DS + N S GQ+Q V + R L KVL+ DEAT+++D AT I + L++
Sbjct: 134 HDSYPS----NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRR 189
Query: 1239 SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENKSSSFAQ 1286
T++ I H + V D V ++S+G + E + +++ + + AQ
Sbjct: 190 LGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPKTPLAQ 238
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 72.0 bits (176), Expect = 6e-14
Identities = 51/218 (23%), Positives = 98/218 (44%), Gaps = 8/218 (3%)
Query: 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIV 1114
V + N + L L + P G T IVG+ G GKS+L+ + ++ G++
Sbjct: 1 VQVTNGYFSWGSGLA-TLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVH 59
Query: 1115 IDGINISSIGLHDLRSR----LSIIPQDPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQL 1170
N S RSR ++ Q P + TV N+ + + D C L
Sbjct: 60 WSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSL 119
Query: 1171 GDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDT-ATDNL 1229
++ + + E G N S GQRQ +C+ R L + + ++ LD+ +++D +D+L
Sbjct: 120 QPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHL 179
Query: 1230 IQQTLRQHFSD--CTVITIAHRITSVIDSDMVLLLSHG 1265
+Q+ + + D T++ + H++ + +D ++ + G
Sbjct: 180 MQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 6e-14
Identities = 65/240 (27%), Positives = 108/240 (45%), Gaps = 40/240 (16%)
Query: 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 676
IE + +++ S L+DI++K G + G G+GKS+L+ I + G++
Sbjct: 4 IEFKEVSYS---SFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSI 60
Query: 677 KLCGT--KAY-----------VAQSPWIQSGNIEDNILFG------KPMDREKYDRVLEA 717
+ G K V Q P + G ++DNI +G K +D E Y L
Sbjct: 61 LIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYY---LSI 117
Query: 718 CSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTG 777
L K+ + D NLSGG+ QR+ IAR L + ++ L D+P SA+D T
Sbjct: 118 VGLNKEY---ATRDVK-------NLSGGEAQRVSIARTLANNPEVLLLDEPTSALDP-TS 166
Query: 778 SHLFKEVLLGLLRSK--TVIYVTHQVEFLP-AADLILVMKDGKITQAGK-YNDILNSGTD 833
+ + +E+++ L TVI++TH +E D + G + + K Y+ N +
Sbjct: 167 TEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNE 226
|
Length = 241 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 6e-14
Identities = 64/243 (26%), Positives = 108/243 (44%), Gaps = 44/243 (18%)
Query: 1074 GLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHD---LRS 1130
G++ T G G+VG +GSGKSTL L R++ GEI DG +I + + LR
Sbjct: 305 GISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRR 363
Query: 1131 RLSIIPQDP------------TMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNK- 1177
R+ ++ QDP + EG + +D+ + EAL++ L RN+
Sbjct: 364 RMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRY 423
Query: 1178 --EGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLR 1235
E +S GQRQ + + R L+ K ++++LDE T+++D + + LR
Sbjct: 424 PHE-------------FSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLR 470
Query: 1236 --QHFSDCTVITIAHRITSVID--SDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLVAEY 1291
Q + + I+H + +V+ V+++ G I E + N EY
Sbjct: 471 DLQQKHGLSYLFISHDL-AVVRALCHRVIVMRDGKIVEQGPTEAVFANPQH-------EY 522
Query: 1292 TQR 1294
T+
Sbjct: 523 TRA 525
|
Length = 534 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 69.8 bits (172), Expect = 6e-14
Identities = 49/204 (24%), Positives = 82/204 (40%), Gaps = 63/204 (30%)
Query: 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 676
IE+ + + + L+DI+L + G R+ + G G+GKS+LL I GE+ G +
Sbjct: 1 IELENLSKTYG---GKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV 57
Query: 677 KLCGTKAYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIG 736
++I F +Q
Sbjct: 58 TW------------------------------------------GSTVKIGYF-EQ---- 70
Query: 737 ERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRS--KTV 794
LSGG+K R+ +A+ L ++ ++ L D+P + +D + E L L+ TV
Sbjct: 71 -----LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLES-----IEALEEALKEYPGTV 120
Query: 795 IYVTHQVEFLPA-ADLILVMKDGK 817
I V+H FL A I+ ++DGK
Sbjct: 121 ILVSHDRYFLDQVATKIIELEDGK 144
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 7e-14
Identities = 52/185 (28%), Positives = 84/185 (45%), Gaps = 25/185 (13%)
Query: 1075 LTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSI 1134
TF G T IVG +GSGKSTL+ + P +G ++I+G+++++ +S+
Sbjct: 17 FDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTA--APPADRPVSM 74
Query: 1135 IPQDPTMFEG-TVRNNLD-------PLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVT 1186
+ Q+ +F TV N+ L + I AL + L + G+L
Sbjct: 75 LFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGEL----- 129
Query: 1187 ENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQ---TLRQHFSDCTV 1243
S G+RQ V L RVL++ VL+LDE A++D A + L + TV
Sbjct: 130 ------SGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAE-TKMTV 182
Query: 1244 ITIAH 1248
+ + H
Sbjct: 183 LMVTH 187
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 7e-14
Identities = 68/244 (27%), Positives = 114/244 (46%), Gaps = 37/244 (15%)
Query: 614 ETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKIS 673
E I + +F + ++ L+D++ V+ G VA+ G GSGKS+L + G + +
Sbjct: 3 EEIIRVEHISFRYPDAAT-YALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEA 61
Query: 674 GTLKLCGTK-------------AYVAQSPWIQ--SGNIEDNILFG---KPMDREKY-DRV 714
GT+ + G V Q+P Q ++D++ FG + RE+ +RV
Sbjct: 62 GTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERV 121
Query: 715 LEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDA 774
+A + + + F ++ LSGGQKQR+ IA L DI + D+ S +D
Sbjct: 122 DQAL---RQVGMEDFLNR-----EPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDP 173
Query: 775 HTGSHLFKEVLLGLLRSK-----TVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILN 829
G +EVL + + K TV+ +TH ++ AD ++VM G+I + G +I
Sbjct: 174 -RGR---REVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFK 229
Query: 830 SGTD 833
SG
Sbjct: 230 SGHM 233
|
Length = 279 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 7e-14
Identities = 58/192 (30%), Positives = 101/192 (52%), Gaps = 22/192 (11%)
Query: 1072 LRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRI--VEP---TAGEIVIDGINISS--IG 1124
L ++ F T ++G +GSGKSTL++++ R+ + P G IV +G NI S
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTD 80
Query: 1125 LHDLRSRLSIIPQDPTMFEGTVRNNLD---PLEEYKDEEIW-EALDKCQLG----DEVRN 1176
DLR + ++ Q P F ++ N+ L+ KD+++ EA++K G DEV++
Sbjct: 81 TVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKD 140
Query: 1177 KEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQ 1236
R+ ++ S GQ+Q VC+ RVL K+++LDE T+++D + I++TL
Sbjct: 141 -------RLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLG 193
Query: 1237 HFSDCTVITIAH 1248
D T++ +
Sbjct: 194 LKDDYTMLLVTR 205
|
Length = 252 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 76.5 bits (188), Expect = 8e-14
Identities = 82/394 (20%), Positives = 163/394 (41%), Gaps = 42/394 (10%)
Query: 913 IQHFSETISGSTTIRSFDQESRFRDTNMKLVDG-----YSRPKFHIAGAMEWLCFRLDML 967
I+ +E ++G ++ + E F D + H G W+C ++
Sbjct: 496 IKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTPF-LV 554
Query: 968 SSLTFAFSLVLLISIPKGVIEPAIAGLAVTY----GLNLNMLQAWVIWNLCNLENKIISV 1023
+ +TFA V + +++ A +++ LN+L + ++ +S+
Sbjct: 555 ALITFA---VYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVI----SSIVQASVSL 607
Query: 1024 ERILQYTCISSEPPLVIEESRPDCSWPTHGEVDILNLQVRYAPHLPLVLRGLTCTFPGGM 1083
+R+ + P IE R + + N +A LP L G+T + P G
Sbjct: 608 KRLRIFLSHEELEPDSIE--RRTIKPGEGNSITVHNATFTWARDLPPTLNGITFSIPEGA 665
Query: 1084 KTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDPTMFE 1143
+VG+ G GKS+L+ L ++ G + + G ++ +PQ +
Sbjct: 666 LVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-------------SVAYVPQQAWIQN 712
Query: 1144 GTVRNNL---DPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLV 1200
++R N+ L E +++ EA C L ++ + + E G N S GQ+Q V
Sbjct: 713 DSLRENILFGKALNEKYYQQVLEA---CALLPDLEILPSGDRTEIGEKGVNLSGGQKQRV 769
Query: 1201 CLGRVLLKKSKVLVLDEATASVDTATDNLIQQTL---RQHFSDCTVITIAHRITSVIDSD 1257
L R + + + + D+ ++VD I + + + T I + H I+ + D
Sbjct: 770 SLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVD 829
Query: 1258 MVLLLSHGIIEEYDSPTKLLENKSSSFAQLVAEY 1291
+++++S G I E S +LL+ + +FA+ + Y
Sbjct: 830 VIIVMSGGKISEMGSYQELLQ-RDGAFAEFLRTY 862
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 8e-14
Identities = 58/253 (22%), Positives = 115/253 (45%), Gaps = 36/253 (14%)
Query: 1053 GEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGE 1112
++I N+ + + ++ G ++G +G GK+TL++ + +P++GE
Sbjct: 4 PALEIRNVSKSFGDFT--AVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGE 61
Query: 1113 IVIDGINISSIGLHDLRSRLSIIPQD----PTMFEGTVRNNL--------DPLEEYKDEE 1160
I++DG +I+ + + + ++ Q P M TV N+ +
Sbjct: 62 ILLDGEDITDVPPE--KRPIGMVFQSYALFPHM---TVEENVAFGLKVRKKLKKAEIKAR 116
Query: 1161 IWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATA 1220
+ EAL+ L EG D + + S GQ+Q V L R L+ + KVL+LDE +
Sbjct: 117 VEEALELVGL-------EGFADRKPHQ----LSGGQQQRVALARALVPEPKVLLLDEPLS 165
Query: 1221 SVDTATDNLIQQTLR--QHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLL 1277
++D +++ L+ Q T + + H + SD + +++ G IE+ +P ++
Sbjct: 166 ALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIY 225
Query: 1278 ENKSSSFAQLVAE 1290
E ++ F VA+
Sbjct: 226 ERPATRF---VAD 235
|
Length = 352 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 1e-13
Identities = 60/212 (28%), Positives = 105/212 (49%), Gaps = 20/212 (9%)
Query: 1087 IVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDL----RSRLSIIPQDPTMF 1142
I+G +GSGKST ++ L R++EPTAG+I IDG NI +L R ++ ++ Q +F
Sbjct: 24 IMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALF 83
Query: 1143 -EGTVRNNLD---PLEEYKDEEIWE-ALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQR 1197
T+ N L + ++E E AL+ +L E E S G +
Sbjct: 84 PHMTILQNTSLGPELLGWPEQERKEKALELLKLVG----LEEYEHRYPDE----LSGGMQ 135
Query: 1198 QLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLR--QHFSDCTVITIAHRITSVID 1255
Q V L R L + +L++DEA +++D + +Q L+ Q T++ I H + I
Sbjct: 136 QRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIR 195
Query: 1256 -SDMVLLLSHGIIEEYDSPTKLLENKSSSFAQ 1286
D ++++ G I + +P ++L N ++ + +
Sbjct: 196 IGDRIVIMKAGEIVQVGTPDEILRNPANEYVE 227
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 1e-13
Identities = 56/210 (26%), Positives = 97/210 (46%), Gaps = 46/210 (21%)
Query: 649 AVCGTVGSGKSSLLSCILGEVPKISGTLKLCG------TK-----------AYVAQS--- 688
A+ G GSGK+SL++ I G G ++L G K YV Q
Sbjct: 28 ALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARL 87
Query: 689 -PWIQSGNIEDNILFG-KPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQ 746
P + N+ +G R ++D++ +L G + ++ LSGG+
Sbjct: 88 FPHY---TVRGNLRYGMWKSMRAQFDQL---VAL--------LGIEHLLDRYPGTLSGGE 133
Query: 747 KQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL--LGLLRSKT---VIYVTHQV 801
KQR+ I RAL ++ L D+P +++D +E+L L LR + ++YV+H +
Sbjct: 134 KQRVAIGRALLTAPELLLMDEPLASLDLPRK----REILPYLERLRDEINIPILYVSHSL 189
Query: 802 -EFLPAADLILVMKDGKITQAGKYNDILNS 830
E L AD ++V+++GK+ +G ++ S
Sbjct: 190 DEVLRLADRVVVLENGKVKASGPLEEVWGS 219
|
Length = 352 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 1e-13
Identities = 68/217 (31%), Positives = 102/217 (47%), Gaps = 42/217 (19%)
Query: 639 NLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG---TKAYVAQSP---WIQ 692
+L V G RVA+ G G+GKS+LL+ I G + SG+L L G T ++ P Q
Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQ 78
Query: 693 SGN------IEDNILFG-------KPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERG 739
N + NI G REK + ++ L L G+
Sbjct: 79 ENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-------GQ-- 129
Query: 740 INLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL------RSKT 793
LSGGQ+QR+ +AR L ++ I L D+PFSA+D L +E +L L+ R T
Sbjct: 130 --LSGGQRQRVALARCLVREQPILLLDEPFSALD----PALRQE-MLTLVSQVCQERQLT 182
Query: 794 VIYVTHQVE-FLPAADLILVMKDGKITQAGKYNDILN 829
++ V+H +E A LV+ DG+I G +++L+
Sbjct: 183 LLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLS 219
|
Length = 232 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 1e-13
Identities = 65/272 (23%), Positives = 114/272 (41%), Gaps = 55/272 (20%)
Query: 1057 ILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVID 1116
+ NL + Y +L ++ T G + G+VGR G+GKSTL++ L +EP +GE+
Sbjct: 6 LENLSLAYGDRP--LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRP 63
Query: 1117 GINISSIGLHDLRSRLSIIPQDPTMFEG-TVRNNL--------DPLEEYKDEEIWEALDK 1167
+ R+ + Q+P + TV + + + L E ++ A
Sbjct: 64 K-GL----------RVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPD 112
Query: 1168 CQLGDEVRNKEGKLD-----SRVTE-------NGENWSM-----GQRQLVCLGRVLLKKS 1210
+L E+ +LD +R E E+ + G R+ V L R LL++
Sbjct: 113 DELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEP 172
Query: 1211 KVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSD-------MVLLLS 1263
+L+LDE T +D + ++ L+++ TVI ++H D +L L
Sbjct: 173 DLLLLDEPTNHLDLESIEWLEDYLKRY--PGTVIVVSH------DRYFLDNVATHILELD 224
Query: 1264 HGIIEEYDSP-TKLLENKSSSFAQLVAEYTQR 1294
G + Y + LE K+ Q A Y ++
Sbjct: 225 RGKLTPYKGNYSSYLEQKAERLRQEAAAYEKQ 256
|
Length = 530 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 1e-13
Identities = 62/256 (24%), Positives = 106/256 (41%), Gaps = 42/256 (16%)
Query: 597 LDDLQSDVVEKHPRGSSETA---------------IEIVDGNFAWDISSNNPTLRDINLK 641
L+ L++ + E+ P + +E + + +D L+D++ +
Sbjct: 287 LEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYD--GGRLLLKDLSFR 344
Query: 642 VFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK---AYVAQ--SPWIQSGNI 696
+ G R+A+ G G+GKS+LL + GE+ +SGT+K G Y Q +
Sbjct: 345 IDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVK-VGETVKIGYFDQHRDELDPDKTV 403
Query: 697 EDNILFGKPMDREKYDR-VLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARA 755
+ + G P E+ R L G+ + LSGG+K R+ +A+
Sbjct: 404 LEELSEGFPDGDEQEVRAYLGRFGFT--------GED--QEKPVGVLSGGEKARLLLAKL 453
Query: 756 LYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRS--KTVIYVTHQVEFLPA-ADLILV 812
L Q ++ L D+P + +D + E L L TV+ V+H FL A I +
Sbjct: 454 LLQPPNLLLLDEPTNHLDIES-----LEALEEALLDFEGTVLLVSHDRYFLDRVATRIWL 508
Query: 813 MKDGKITQAGKYNDIL 828
++D G Y D L
Sbjct: 509 VEDKVEEFEGGYEDYL 524
|
Length = 530 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 1e-13
Identities = 59/219 (26%), Positives = 92/219 (42%), Gaps = 46/219 (21%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS 1130
L ++ T G ++G G+GKSTL L R+ G+I + G HDLR
Sbjct: 16 ALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAG--------HDLRR 67
Query: 1131 -------RLSIIPQDPTM-FEGTVRNNLDPLEEY-----------KDEEIWEALDKCQLG 1171
RL ++ Q PT+ + +VR NL Y I E L + L
Sbjct: 68 APRAALARLGVVFQQPTLDLDLSVRQNL----RYHAALHGLSRAEARARIAELLARLGLA 123
Query: 1172 DEVRNKEGKLDSRVTE-NGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLI 1230
+ + D +V E NG G R+ V + R LL + +L+LDE T +D A+ I
Sbjct: 124 E-------RADDKVRELNG-----GHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAI 171
Query: 1231 QQTLRQHFSD--CTVITIAHRITSVIDSDMVLLLSHGII 1267
+R D +V+ H + + D +++L G +
Sbjct: 172 TAHVRALARDQGLSVLWATHLVDEIEADDRLVVLHRGRV 210
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 71.4 bits (176), Expect = 1e-13
Identities = 60/224 (26%), Positives = 101/224 (45%), Gaps = 61/224 (27%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------------ 682
LR ++L+V G V G G GK++LL ++G +P SG+++L G
Sbjct: 16 LRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARA 75
Query: 683 --AYVAQSPWIQSG-NIEDNILFG--------KPMDREKYDR--VLEACSLKKDLEILSF 729
AYV Q I +E+N+L G + + E Y+ VL+
Sbjct: 76 GIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKE------------ 123
Query: 730 GDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPF-----SAVDAHTGSHLFKEV 784
++G RG +LSGGQ+Q++ IARAL + L D+P S + K++
Sbjct: 124 ----MLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSII---------KDI 170
Query: 785 --LLGLLRSK---TVIYVTHQVEF-LPAADLILVMKDGKITQAG 822
++ LR++ ++ V ++F AD VM+ G++ +G
Sbjct: 171 GRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASG 214
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 1e-13
Identities = 59/228 (25%), Positives = 111/228 (48%), Gaps = 31/228 (13%)
Query: 1072 LRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVE-----PTAGEIVIDGINISSIGLH 1126
L +T + P T ++G +G GKSTL++ R+ + G+I+ +G NI G
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81
Query: 1127 --DLRSRLSIIPQDPTMFEGTVRNNL------DPLEEYK--DEEIWEALDKCQLGDEVRN 1176
LR ++ ++ Q P F ++ N+ + K D + ++L L DEV++
Sbjct: 82 VVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKD 141
Query: 1177 KEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVD-TAT---DNLIQQ 1232
R+ ++ + S GQ+Q +C+ R L +V+++DE +++D AT ++LI+
Sbjct: 142 -------RLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIED 194
Query: 1233 TLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLEN 1279
+++ TVI + H + SD + G + E+D T++ EN
Sbjct: 195 LKKEY----TVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFEN 238
|
Length = 253 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 1e-13
Identities = 59/221 (26%), Positives = 102/221 (46%), Gaps = 32/221 (14%)
Query: 633 PTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK---------- 682
+ D++L+V G V + G G+GK++ I+G V SG + L
Sbjct: 18 KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRA 77
Query: 683 ----AYVAQSPWIQSG-NIEDNIL-----FGKPMDREKYDRVLEACSLKKDLEILSFGDQ 732
Y+ Q I +EDNI+ K D +K +R E +L ++ I D
Sbjct: 78 RLGIGYLPQEASIFRKLTVEDNIMAVLEIREK--DLKKAERKEELDALLEEFHITHLRDS 135
Query: 733 TVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSK 792
+ +LSGG+++R++IARAL + L D+PF+ VD + + ++ L+ +
Sbjct: 136 -----KAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQR--IIKHLKDR 188
Query: 793 TV-IYVT-HQV-EFLPAADLILVMKDGKITQAGKYNDILNS 830
+ + +T H V E L D ++ DGK+ G +I+N+
Sbjct: 189 GIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN 229
|
Length = 243 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.9 bits (176), Expect = 1e-13
Identities = 52/213 (24%), Positives = 103/213 (48%), Gaps = 23/213 (10%)
Query: 1085 TGIVGRTGSGKSTLIQTLFRIVE-----PTAGEIVIDGINI--SSIGLHDLRSRLSIIPQ 1137
T ++G +G GKST ++ L R+ + GE+++DG NI + + +LR R+ ++ Q
Sbjct: 33 TALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQ 92
Query: 1138 DPTMFEGTVRNN------LDPLEEYK--DEEIWEALDKCQLGDEVRNKEGKLDSRVTENG 1189
P F ++ +N + +++ K D+ + AL K L DEV++ K +
Sbjct: 93 KPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKK-------SA 145
Query: 1190 ENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHR 1249
S GQ+Q +C+ R + K V+++DE T+++D + I+ + + + T++ + H
Sbjct: 146 LKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHN 205
Query: 1250 ITSVID-SDMVLLLSHGIIEEYDSPTKLLENKS 1281
+ SD G + E++ K+
Sbjct: 206 MQQASRVSDYTAFFLMGDLIEFNKTEKIFLEPQ 238
|
Length = 251 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 1e-13
Identities = 58/229 (25%), Positives = 103/229 (44%), Gaps = 37/229 (16%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS 1130
+L G++ G I+G G+GKSTL++ L + P +GE+ ++G+ ++S +L
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELAR 75
Query: 1131 RLSIIPQDPTM-FEGTVRN--------NLDPLEEYKDEEIWE-ALDKCQL----GDEVRN 1176
+++PQ+ ++ F TV+ + E +DE I AL L G + R
Sbjct: 76 HRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRT 135
Query: 1177 KEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKS------KVLVLDEATASVDTATDNLI 1230
G G++Q V L RVL + + L LDE T+++D A +
Sbjct: 136 LSG---------------GEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHT 180
Query: 1231 QQTLRQHFSD-CTVITIAHRIT-SVIDSDMVLLLSHGIIEEYDSPTKLL 1277
+ RQ + V+ + H + + +D ++LL G + SP +L
Sbjct: 181 LRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVL 229
|
Length = 259 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 70.6 bits (174), Expect = 2e-13
Identities = 59/237 (24%), Positives = 98/237 (41%), Gaps = 36/237 (15%)
Query: 1055 VDILNLQVRYAPHLP--LVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGE 1112
+++ N+ Y L ++ + G +VG +G GKSTL++ + + PT+GE
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 1113 IVIDGINISSIGLHDLRSRLSIIPQDPTMFE-GTVRNN-LDPLE------EYKDEEIWEA 1164
+++DG ++ G + Q + TV +N LE E E
Sbjct: 61 VLVDGEPVTGPG-----PDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEEL 115
Query: 1165 LDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDT 1224
L+ L +L S G RQ V L R L VL+LDE +++D
Sbjct: 116 LELVGLSGFENAYPHQL-----------SGGMRQRVALARALAVDPDVLLLDEPFSALDA 164
Query: 1225 ATDNLIQQTL----RQHFSDCTVITIAHRIT-SVIDSDMVLLLS---HGIIEEYDSP 1273
T +Q+ L R+ TV+ + H I +V +D V++LS I+ E +
Sbjct: 165 LTREQLQEELLDIWRET--GKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEVD 219
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.8 bits (177), Expect = 2e-13
Identities = 70/254 (27%), Positives = 112/254 (44%), Gaps = 53/254 (20%)
Query: 612 SSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----L 666
AIE+ D N + + L+DINL + A+ G G GKS+LL C+ L
Sbjct: 3 MKIPAIEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDL 59
Query: 667 GEVPKISGTLKLCGTKAY---------------VAQSPWIQSGNIEDNILFG---KPMDR 708
++ G + L G Y V Q P +I DN+ +G +
Sbjct: 60 IPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKD 119
Query: 709 EKYDRVLEACSLK--------KDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDA 760
++ D ++E+ SLK KD + + + LSGGQ+QR+ IARAL
Sbjct: 120 KELDEIVES-SLKKAALWDEVKDR----------LHKSALGLSGGQQQRLCIARALAVKP 168
Query: 761 DIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSK-TVIYVTHQVEFLPAA---DLILVMKDG 816
++ L D+P SA+D + + E L+ L+ K T++ VTH ++ AA D G
Sbjct: 169 EVLLMDEPTSALDPISTLKI--EELITELKKKYTIVIVTHNMQ--QAARVSDYTAFFYLG 224
Query: 817 KITQAGKYNDILNS 830
++ + G + I +
Sbjct: 225 ELVEFGPTDKIFTN 238
|
Length = 253 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 2e-13
Identities = 66/239 (27%), Positives = 107/239 (44%), Gaps = 42/239 (17%)
Query: 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LGEVP 670
AIE V+ + +N ++ ++LK+ A+ G G GKS+LL L E
Sbjct: 4 AIETVNLRVYY---GSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEA 60
Query: 671 KISGTLKLCGTKAYVAQSPWI----------QSGN------IEDNILFGKPMD-----RE 709
++ G ++L G Y I Q N I DN+ G ++ ++
Sbjct: 61 RVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKK 120
Query: 710 KYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPF 769
+ D +E +LKK D+ + + NLSGGQ+QR+ IARAL I L D+P
Sbjct: 121 ELDERVE-WALKKAALWDEVKDR--LNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPT 177
Query: 770 SAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPA-----ADLILVMKDGKITQAGK 823
+ +D G+ +E+L L + T++ VTH PA +D + + GK+ + G
Sbjct: 178 ANIDP-VGTAKIEELLFELKKEYTIVLVTHS----PAQAARVSDYVAFLYLGKLIEVGP 231
|
Length = 253 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.1 bits (174), Expect = 2e-13
Identities = 60/221 (27%), Positives = 107/221 (48%), Gaps = 33/221 (14%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCIL---GEVP--KISGTLKLCGTKAY----- 684
++++ +K+F A+ G G GK++LL I +P ++ G + G Y
Sbjct: 19 VKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLD 78
Query: 685 ----------VAQSPWIQSGNIEDNILFGKPM----DREKYDRVLEACSLKKDLEILSFG 730
V Q P +I DN+ FG + + K DR++E + L+ +
Sbjct: 79 VTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVE-----ESLKKAALW 133
Query: 731 DQTV--IGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL 788
D+ + + G LSGGQ+QR+ IARAL + ++ L D+P SA+D + +++L L
Sbjct: 134 DEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDP-IATQRIEKLLEEL 192
Query: 789 LRSKTVIYVTHQV-EFLPAADLILVMKDGKITQAGKYNDIL 828
+ T++ VTH + + + AD I M G++ + G +I+
Sbjct: 193 SENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIV 233
|
Length = 250 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 2e-13
Identities = 48/205 (23%), Positives = 87/205 (42%), Gaps = 24/205 (11%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS 1130
VL ++ G G +G G+GK+T ++ + +++P +GEI DG + +
Sbjct: 15 VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQK--NIEALR 72
Query: 1131 RLSIIPQDPTMF-EGTVRNNLDPLEEY---KDEEIWEALDKCQLGDEVRNKEGKLDSRVT 1186
R+ + + P + T R NL L + + I E LD L D + K
Sbjct: 73 RIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGF----- 127
Query: 1187 ENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVIT 1245
S+G +Q + + LL +L+LDE T +D +++ + TV+
Sbjct: 128 ------SLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVL- 180
Query: 1246 IAHRITSVIDSDMVLLLSH-GIIEE 1269
I+S + S++ + GII +
Sbjct: 181 ----ISSHLLSEIQKVADRIGIINK 201
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 2e-13
Identities = 58/192 (30%), Positives = 90/192 (46%), Gaps = 34/192 (17%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LGEVPKISGTLKLCGTKAY----- 684
L+ INL + A+ G G GKS+ L + L KI G + L G Y
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78
Query: 685 ----------VAQSPWIQSGNIEDNILFGKPM----DREKYDRVLEACSLKKDL---EIL 727
V Q P +I DN+ +G D++K D ++E SLK E+
Sbjct: 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEK-SLKGAALWDEVK 137
Query: 728 SFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLG 787
++ +G LSGGQ+QR+ IARAL + ++ L D+P SA+D + + +E++
Sbjct: 138 DRLKKSALG-----LSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKI-EELIQE 191
Query: 788 LLRSKTVIYVTH 799
L + T++ VTH
Sbjct: 192 LKKDYTIVIVTH 203
|
Length = 250 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 2e-13
Identities = 68/220 (30%), Positives = 101/220 (45%), Gaps = 46/220 (20%)
Query: 631 NNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTLKLCG---TKAYVA 686
+N + ++NL + G V + G G GK+++L + G E P G + + G T +
Sbjct: 18 SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT-EGQIFIDGEDVTHRSIQ 76
Query: 687 QSPW---IQS------GNIEDNILFGKPM----DREKYDRVLEACSLKKDLEILSFGDQT 733
Q QS ++ +N+ +G M E+ RV EA L DL F D+
Sbjct: 77 QRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELV-DLA--GFEDRY 133
Query: 734 VIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSK- 792
V +SGGQ+QR+ +ARAL + LFD+P S +DA+ L +R K
Sbjct: 134 VD-----QISGGQQQRVALARALILKPKVLLFDEPLSNLDAN---------LRRSMREKI 179
Query: 793 ---------TVIYVTH-QVEFLPAADLILVMKDGKITQAG 822
T +YVTH Q E +D ++VM GKI Q G
Sbjct: 180 RELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIG 219
|
Length = 351 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 2e-13
Identities = 57/240 (23%), Positives = 100/240 (41%), Gaps = 60/240 (25%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK-----ISGTL------------- 676
+ ++ ++ G + + G GSGKS L I+G +PK + G +
Sbjct: 21 VDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80
Query: 677 ---KLCGTK-AYVAQSPWIQSGN--------IEDNILFGKPMDREKY--DRVLEACSLKK 722
K+ G + A + Q P + S N I + + +K +R +E
Sbjct: 81 ELRKIRGKEIAMIFQDP-MTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIEL----- 134
Query: 723 DLEILSFGDQTVIGERGIN-----LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTG 777
LE++ D ER + LSGG +QR+ IA AL + + + D+P +A+D
Sbjct: 135 -LELVGIPDP----ERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTV- 188
Query: 778 SHLFKEVLLGLLRS------KTVIYVTHQVEFLP-AADLILVMKDGKITQAGKYNDILNS 830
+ +L LL+ +I +TH + + AD + VM G+I + G +I +
Sbjct: 189 ----QAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFKN 244
|
Length = 316 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 2e-13
Identities = 60/202 (29%), Positives = 94/202 (46%), Gaps = 43/202 (21%)
Query: 632 NPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LGEVPKISGTLKLCGTKAY-- 684
N L+ INL + A+ G G GKS+LL C+ L E KI+G L + G Y
Sbjct: 16 NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGN 75
Query: 685 ------------VAQSPWIQSGNIEDNILFGKPM----DREKYDRVLEAC--------SL 720
V Q P +I +N+ +G D++ D V+E +
Sbjct: 76 IDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEV 135
Query: 721 KKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHL 780
K L+ +FG LSGGQ+QR+ IAR + + D+ L D+P SA+D +H
Sbjct: 136 KDRLKSHAFG-----------LSGGQQQRLCIARTIAMEPDVILMDEPTSALDP-IATHK 183
Query: 781 FKEVLLGLLRSKTVIYVTHQVE 802
+E++ L ++ T++ VTH ++
Sbjct: 184 IEELMEELKKNYTIVIVTHSMQ 205
|
Length = 249 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 2e-13
Identities = 55/215 (25%), Positives = 90/215 (41%), Gaps = 30/215 (13%)
Query: 1070 LVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEP---TAGEIVIDGINISSIGLH 1126
+L ++ G I+G +GSGK+TL+ + VE T+G+I+ +G
Sbjct: 21 RILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP---D 77
Query: 1127 DLRSRLSIIPQDPTMFEG-TVRNNL---------DPLEEYKDEEIWEALDKCQLGDE-VR 1175
+ ++ + QD + G TVR L + ++ E + L +
Sbjct: 78 QFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIG 137
Query: 1176 NKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLR 1235
V + S G+R+ V + LL KVL+LDE T+ +D+ T + TL
Sbjct: 138 GN------LV----KGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLS 187
Query: 1236 QHF-SDCTVITIAHRITSVIDS--DMVLLLSHGII 1267
Q + VI H+ S + D +LLLS G I
Sbjct: 188 QLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEI 222
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 70.9 bits (174), Expect = 2e-13
Identities = 63/231 (27%), Positives = 98/231 (42%), Gaps = 52/231 (22%)
Query: 632 NPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWI 691
L +I+L + G V + G GSGKS+LL CI SG L + G K P +
Sbjct: 14 TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKV---NDPKV 70
Query: 692 QSGNIE-------------------DNILFG----KPMDREKYDRVLEACSLKKDLEILS 728
I +N++FG + +E EA ++L
Sbjct: 71 DERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKE------EAEKQARELL--- 121
Query: 729 FGDQTVIGERG----INLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEV 784
+ + ER LSGGQ+QR+ IARAL + LFD+P SA+D L EV
Sbjct: 122 --AKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALD----PELRHEV 175
Query: 785 LLGLLRS-----KTVIYVTHQVEFL-PAADLILVMKDGKITQAGKYNDILN 829
L +++ T++ VTH++ F A ++ + G+I + G ++
Sbjct: 176 -LKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIK 225
|
Length = 240 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 3e-13
Identities = 74/270 (27%), Positives = 120/270 (44%), Gaps = 31/270 (11%)
Query: 632 NPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT---------- 681
N L +I+ + G RV + G GSGKS+LLS L + G +++ G
Sbjct: 17 NAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFL-RLLNTEGDIQIDGVSWNSVPLQKW 75
Query: 682 -KAY--VAQSPWIQSGNIEDNI-LFGKPMDREKYDRVLEACSLKKDLEILSFGDQT--VI 735
KA+ + Q +I SG N+ +GK D E + +V E LK +E F Q V+
Sbjct: 76 RKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIW-KVAEEVGLKSVIE--QFPGQLDFVL 132
Query: 736 GERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVI 795
+ G LS G KQ + +AR++ A I L D+P + +D T + ++ L TVI
Sbjct: 133 VDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPIT-YQVIRKTLKQAFADCTVI 191
Query: 796 YVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSGTDFMVLVGAHQQALSALDSIEGGP 855
H++E + LV+++ K+ Q +LN + F +QA+S D ++ P
Sbjct: 192 LSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHF-------KQAISPSDRLKLFP 244
Query: 856 VSERISMNKENGGMDTTNGVTMKEGNEDIQ 885
+K +E E++Q
Sbjct: 245 RRNS---SKSKRKPRPQIQALQEETEEEVQ 271
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 3e-13
Identities = 57/228 (25%), Positives = 99/228 (43%), Gaps = 25/228 (10%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS 1130
L ++ G ++G +G+GKSTL++ + + P AG I ++G + + +R
Sbjct: 17 ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRD 76
Query: 1131 R-LSIIPQDPTMFEG-TVRNN---------LDPLEEYKDEEIWEALDKCQLGDEVRNKEG 1179
R + + Q +F TV +N P E + E L QL
Sbjct: 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPA 136
Query: 1180 KLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLR--QH 1237
+L S GQRQ V L R L + KVL+LDE ++D +++ LR
Sbjct: 137 QL-----------SGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHD 185
Query: 1238 FSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENKSSSF 1284
T + + H ++ +D V++L+ G IE+ P ++ ++ +S F
Sbjct: 186 RLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPASRF 233
|
Length = 345 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 3e-13
Identities = 60/233 (25%), Positives = 103/233 (44%), Gaps = 50/233 (21%)
Query: 630 SNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG------TKA 683
L D++L + G ++ G G+GKS+LLS + + K SG + + G
Sbjct: 12 GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSK 71
Query: 684 YVAQSPWI--QSGNI------EDNILFGK-PM--------DREKYDRVLEACSLKKDLEI 726
+A+ I Q +I D + FG+ P DR + +E
Sbjct: 72 ELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIE---------- 121
Query: 727 LSFGDQTVIGERGIN-LSGGQKQRIQIARALYQDADIYLFDDPFSAVD-AHTGSHLFKEV 784
+ + +R ++ LSGGQ+QR IA L QD D L D+P + +D H+
Sbjct: 122 --YLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQ------ 173
Query: 785 LLGLLR------SKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDILNS 830
++ +LR KT++ V H + F +D I+ +K+GK+ + G ++I+
Sbjct: 174 IMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP 226
|
Length = 252 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 4e-13
Identities = 49/191 (25%), Positives = 82/191 (42%), Gaps = 33/191 (17%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------------ 682
L+ +N G +A+ G G+GKS+LL + G + SG + + G
Sbjct: 8 LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERR 67
Query: 683 ---AYVAQSPWIQ--SGNIEDNILFGKPM-----DREKYDRVLEACSLKKDLEILSFGDQ 732
V Q P Q + +++ ++ FG P+ + E RV EA + + ++
Sbjct: 68 QRVGLVFQDPDDQLFAADVDQDVAFG-PLNLGLSEAEVERRVREALTA---VGASGLRER 123
Query: 733 TVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRS- 791
LSGG+K+R+ IA A+ D+ L D+P + +D G +L L
Sbjct: 124 PT-----HCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDP-AGREQMLAILRRLRAEG 177
Query: 792 KTVIYVTHQVE 802
TV+ TH V+
Sbjct: 178 MTVVISTHDVD 188
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.7 bits (173), Expect = 4e-13
Identities = 52/211 (24%), Positives = 109/211 (51%), Gaps = 24/211 (11%)
Query: 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRI--VEPT--- 1109
+++ NL + +L+ + P T ++G +G GKST I+TL R+ + P
Sbjct: 4 IEVENLNTYFDDAH--ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRH 61
Query: 1110 AGEIVIDGINI--SSIGLHDLRSRLSIIPQDPTMFEGTVRNNL--------DPLEEYKDE 1159
G I +DG++I ++ + +LR ++ ++ Q P F ++ +N+ + E++ +E
Sbjct: 62 EGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEE 121
Query: 1160 EIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEAT 1219
+ E+L L DEV++K LD ++ S GQ+Q +C+ R + +V+++DE
Sbjct: 122 RVEESLKAAALWDEVKDK---LD----KSALGLSGGQQQRLCIARTIAVSPEVILMDEPC 174
Query: 1220 ASVDTATDNLIQQTLRQHFSDCTVITIAHRI 1250
+++D + I+ + + D T++ + H +
Sbjct: 175 SALDPISTTKIEDLIHKLKEDYTIVIVTHNM 205
|
Length = 250 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 4e-13
Identities = 54/231 (23%), Positives = 96/231 (41%), Gaps = 40/231 (17%)
Query: 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIV 1114
++ N+ Y L ++ G + G +G+GK+TL++ L+ + P+ G++
Sbjct: 2 IEFHNVSKAYPGG-VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVR 60
Query: 1115 IDGINISSIGLHD-----LRSRLSIIPQD----PTMFEGTVRNNLD-PLE-EYKDEEIW- 1162
I G +++ L LR R+ ++ QD P TV N+ PLE K E
Sbjct: 61 IAGEDVNR--LRGRQLPLLRRRIGVVFQDFRLLPDR---TVYENVALPLEVRGKKEREIQ 115
Query: 1163 ----EALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEA 1218
AL + L + +L S G++Q V + R ++ +L+ DE
Sbjct: 116 RRVGAALRQVGLEHKADAFPEQL-----------SGGEQQRVAIARAIVNSPPLLLADEP 164
Query: 1219 TASVDTATDNLIQQTLRQ-HFSDCTVITIAHRITSVIDSDMVLLLSHGIIE 1268
T ++D I L++ + TVI H D +V ++H +I
Sbjct: 165 TGNLDPDLSERILDLLKRLNKRGTTVIVATH------DLSLVDRVAHRVII 209
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 69.1 bits (170), Expect = 4e-13
Identities = 53/207 (25%), Positives = 86/207 (41%), Gaps = 54/207 (26%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTL--FRIVEPTAGEIVIDGINISSIGLHDL 1128
+L+ ++ G T I+G +G+GKSTL+ L R +GE++I+G +
Sbjct: 24 LLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLD---KRSF 80
Query: 1129 RSRLSIIPQD----PTMFEGTVRNNLDPLEEYKDEEIWEALD---KCQLGDEVRNKEGKL 1181
R + +PQD PT+ TVR E L K +
Sbjct: 81 RKIIGYVPQDDILHPTL---TVR---------------ETLMFAAKLR------------ 110
Query: 1182 DSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSD- 1240
S G+R+ V + L+ +L LDE T+ +D+++ + LR+
Sbjct: 111 ---------GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTG 161
Query: 1241 CTVITIAHRITSVIDS--DMVLLLSHG 1265
T+I H+ +S I D +LLLS G
Sbjct: 162 RTIICSIHQPSSEIFELFDKLLLLSQG 188
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 4e-13
Identities = 61/217 (28%), Positives = 96/217 (44%), Gaps = 38/217 (17%)
Query: 634 TLRDINLKVFHGMRVAVCGTVGSGKSSLLSCI-LGEVPKISGTLKLCGTKAYVAQSP--- 689
L DI L G + + G G+GKSSLL + L E+P+ SGTL + G +++P
Sbjct: 17 ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPR-SGTLNIAGNHFDFSKTPSDK 75
Query: 690 ------------------WIQSGNIEDNI-----LFGKPMDREKYDRVLEACSLKKDLEI 726
W E+ I + G D+ A L K L +
Sbjct: 76 AIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALAR----AEKLLKRLRL 131
Query: 727 LSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLL 786
+ D+ ++LSGGQ+QR+ IARAL + + LFD+P +A+D + + +
Sbjct: 132 KPYADRY-----PLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKE 186
Query: 787 GLLRSKTVIYVTHQVEFL-PAADLILVMKDGKITQAG 822
T + VTH+VE A ++ M++G I + G
Sbjct: 187 LAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQG 223
|
Length = 242 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.4 bits (172), Expect = 4e-13
Identities = 55/182 (30%), Positives = 89/182 (48%), Gaps = 24/182 (13%)
Query: 1085 TGIVGRTGSGKSTLIQTLFRIVE---PTAGEIVID--GINI--SSIGLHDLRSRLSIIPQ 1137
T I+G +G GKST I+TL RI E P E V+D G NI I ++ LR ++ ++ Q
Sbjct: 36 TAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQ 95
Query: 1138 DPTMFEGTVRNNL---------DPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTEN 1188
P F ++ N+ P + DE + AL L EV++K K +
Sbjct: 96 RPNPFPMSIYENVAYGVRISAKLPQADL-DEIVESALKGAALWQEVKDKLNK-------S 147
Query: 1189 GENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAH 1248
S GQ+Q +C+ R L K KVL++DE +++D +++ + S+ T+ + H
Sbjct: 148 ALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTH 207
Query: 1249 RI 1250
+
Sbjct: 208 NM 209
|
Length = 259 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 4e-13
Identities = 59/204 (28%), Positives = 91/204 (44%), Gaps = 22/204 (10%)
Query: 1070 LVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLR 1129
+ ++ T P G++G G+GKSTL++ + I+ PT+GEI+ DG + DL
Sbjct: 14 TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTR---KDLH 70
Query: 1130 SRLSIIPQDPTMFEGTVRNNLD---PLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVT 1186
S+I P T R NL L D I E L+ L + + K +
Sbjct: 71 KIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQ------ 124
Query: 1187 ENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITI 1246
+S+G +Q + + LL K+L+LDE T +D + Q LR+ I
Sbjct: 125 -----FSLGMKQRLGIAIALLNHPKLLILDEPTNGLDP----IGIQELRELIRSFPEQGI 175
Query: 1247 AHRITSVIDSDMVLLLSH-GIIEE 1269
++S I S++ L H GII E
Sbjct: 176 TVILSSHILSEVQQLADHIGIISE 199
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 5e-13
Identities = 60/229 (26%), Positives = 111/229 (48%), Gaps = 43/229 (18%)
Query: 1087 IVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIG---LHDLRS-RLSIIPQD---- 1138
I+G +GSGKSTL++ + R++EPT+G+++IDG +I+++ L +LR ++S++ Q
Sbjct: 55 IMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALL 114
Query: 1139 PTMFEGTVRNNLD-PLE------EYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGEN 1191
P TV N+ LE ++E EAL+ L +L
Sbjct: 115 PHR---TVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDEL---------- 161
Query: 1192 WSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDC------TVIT 1245
S G +Q V L R L +L++DEA +A D LI++ ++ T++
Sbjct: 162 -SGGMQQRVGLARALAVDPDILLMDEAF----SALDPLIRREMQDELLRLQAELQKTIVF 216
Query: 1246 IAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLVAEYTQ 1293
I H + + D + ++ G + + +P ++L N ++ + V E+ +
Sbjct: 217 ITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNPANDY---VREFFR 262
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 5e-13
Identities = 47/176 (26%), Positives = 83/176 (47%), Gaps = 23/176 (13%)
Query: 1085 TGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDG--INISSIGLH--DLRSRLSIIPQDPT 1140
TGI G +G+GKSTL++ + + +P G IV++G + S ++ + ++ ++ Q
Sbjct: 26 TGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYA 85
Query: 1141 MFEG-TVRNNLD-PLEEYKDEEIW----EALDKCQLGDEVRNKEGKLDSRVTENGENWSM 1194
+F VR NL L+ ++ E E LD L + +L S
Sbjct: 86 LFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQL-----------SG 134
Query: 1195 GQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSD--CTVITIAH 1248
G++Q V L R L + ++L+LDE +++D A + L+Q + VI + H
Sbjct: 135 GEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTH 190
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 5e-13
Identities = 44/171 (25%), Positives = 70/171 (40%), Gaps = 15/171 (8%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS 1130
+ L+ T G I G G+GK+TL++ L ++ P AGE+ G I ++ ++
Sbjct: 17 LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQA 76
Query: 1131 RLSIIPQDPTMFEGTVRNNL----DPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVT 1186
L + Q E T NL IWEAL + L G+L
Sbjct: 77 LLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQL----- 131
Query: 1187 ENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQH 1237
S GQ++ V L R+ L + + +LDE ++D L+ + H
Sbjct: 132 ------SAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAH 176
|
Length = 209 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 5e-13
Identities = 69/225 (30%), Positives = 100/225 (44%), Gaps = 35/225 (15%)
Query: 621 DGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG 680
DG A D D++L ++ G A+ G G GKS+LL + G +G + L G
Sbjct: 30 DGQHAVD---------DVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDG 80
Query: 681 TK-AYVA--QSP---WIQS------GNIEDNILFGKPMDR----EKYDRVLEACSLKKDL 724
++V Q P QS +E NI FG D+ E RV E L +
Sbjct: 81 VDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGL---V 137
Query: 725 EILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEV 784
+ F + LSGGQ+QR+ +AR+L + + L D+P A+D + EV
Sbjct: 138 HMQEFA-----KRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEV 192
Query: 785 LLGLLR-SKTVIYVTH-QVEFLPAADLILVMKDGKITQAGKYNDI 827
+ L R T + VTH Q E + A I +M GK Q G+ +I
Sbjct: 193 VDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEI 237
|
Length = 377 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 6e-13
Identities = 66/250 (26%), Positives = 105/250 (42%), Gaps = 33/250 (13%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSI---GLHD 1127
VL ++ + G G++GR+G GKSTL + L + +P G + G ++ +
Sbjct: 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRA 85
Query: 1128 LRSRLSIIPQD-PTMF--EGTVRNNL-DPLEEYKD-------EEIWEALDKCQLGDEVRN 1176
R + ++ QD P+ TVR + +PL I E LD L E
Sbjct: 86 FRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSED-- 143
Query: 1177 KEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLR- 1235
D + S GQ Q + + R L K K++VLDEA +++D +I + LR
Sbjct: 144 ----ADKLPRQ----LSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRK 195
Query: 1236 -QHFSDCTVITIAHRITSVID-SDMVLLLSHG-IIEEYDSPTKLLENKSSSFAQLVA--- 1289
Q + I H + V V ++ G I+EE D +LL K + L +
Sbjct: 196 LQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDV-AQLLSFKHPAGRNLQSAVL 254
Query: 1290 -EYTQRSSSS 1298
E+ R S +
Sbjct: 255 PEHPVRRSIT 264
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 6e-13
Identities = 55/213 (25%), Positives = 99/213 (46%), Gaps = 7/213 (3%)
Query: 1070 LVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLR 1129
L++ G+ T P G TG++G GSGKSTL++ L + P AG + + G+++ +
Sbjct: 15 LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARA 74
Query: 1130 SRLSIIPQD-PTMFEGTVRNNLDPLEEYKDEEIW--EALDKCQLGDEVRNKEGKLDSRVT 1186
R++++ QD T TVR+ + L +W ++ + D + L
Sbjct: 75 RRVALVEQDSDTAVPLTVRDVV-ALGRIPHRSLWAGDSPHDAAVVDRALARTE-LSHLAD 132
Query: 1187 ENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSD-CTVIT 1245
+ S G+RQ V + R L ++ K+L+LDE T +D +R+ + TV+
Sbjct: 133 RDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVA 192
Query: 1246 IAHRIT-SVIDSDMVLLLSHGIIEEYDSPTKLL 1277
H + + D V++L G + P ++L
Sbjct: 193 ALHDLNLAASYCDHVVVLDGGRVVAAGPPREVL 225
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 6e-13
Identities = 58/193 (30%), Positives = 94/193 (48%), Gaps = 23/193 (11%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS 1130
+L L+ TFP G TG++G GSGKSTL++ L R P+ GEI++D + S
Sbjct: 26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFAR 85
Query: 1131 RLSIIPQDPTMFEG-TVRNNLDPLEEYKDEEIWE-ALDKCQLGDEVRNKEG-------KL 1181
+++ +PQ EG TVR L + Y W AL + D + +E L
Sbjct: 86 KVAYLPQQLPAAEGMTVRE-LVAIGRYP----WHGALGRFGAADREKVEEAISLVGLKPL 140
Query: 1182 DSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATD----NLIQQTLRQH 1237
R+ ++ S G+RQ + ++ + S+ L+LDE T+++D A L+ + ++
Sbjct: 141 AHRLVDS---LSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQER 197
Query: 1238 FSDCTVITIAHRI 1250
TVI + H I
Sbjct: 198 --GLTVIAVLHDI 208
|
Length = 265 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.7 bits (170), Expect = 7e-13
Identities = 58/215 (26%), Positives = 108/215 (50%), Gaps = 23/215 (10%)
Query: 1085 TGIVGRTGSGKSTLIQTLFR---IVE--PTAGEIVIDGINISS--IGLHDLRSRLSIIPQ 1137
T ++G +G GKST ++TL R +VE G ++ +G NI S + +LR ++ ++ Q
Sbjct: 36 TALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQ 95
Query: 1138 DPTMFEGTVRNNLD------PLEEYK--DEEIWEALDKCQLGDEVRNKEGKLDSRVTENG 1189
P F ++ +N+ ++ K DE + ++L K L +EV++K + N
Sbjct: 96 TPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDK-------LNTNA 148
Query: 1190 ENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHR 1249
+ S GQ+Q +C+ R L + V+++DE T+++D + I++ + T+I + H
Sbjct: 149 LSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHN 208
Query: 1250 ITSVID-SDMVLLLSHGIIEEYDSPTKLLENKSSS 1283
+ SD +G IEE S +L N ++
Sbjct: 209 MQQAGRISDRTAFFLNGCIEEESSTDELFFNPKNT 243
|
Length = 254 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 8e-13
Identities = 57/229 (24%), Positives = 104/229 (45%), Gaps = 30/229 (13%)
Query: 1072 LRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSR 1131
L ++ P G ++G +GSGK+TL++ + + P +G I+ G + + ++ R
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATD---VPVQER 74
Query: 1132 -LSIIPQDPTMFEG-TVRNNL-----------DPLEEYKDEEIWEALDKCQLGDEVRNKE 1178
+ + Q +F TV +N+ P E ++ E L QL
Sbjct: 75 NVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLD------- 127
Query: 1179 GKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF 1238
L R S GQRQ V L R L + KVL+LDE ++D +++ LR+
Sbjct: 128 -WLADRYPAQ---LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLH 183
Query: 1239 SDCTVITI--AHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENKSSSF 1284
+ V T+ H ++ +D V++++ G IE+ +P ++ ++ +S F
Sbjct: 184 DELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDHPASPF 232
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 72.4 bits (177), Expect = 1e-12
Identities = 52/169 (30%), Positives = 91/169 (53%), Gaps = 14/169 (8%)
Query: 685 VAQSPWIQSGNIEDNILFGKP-MDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLS 743
V+Q P + + +I +NI FGK RE R + ++ + +E L T +G G +LS
Sbjct: 1301 VSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLS 1360
Query: 744 GGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL-LGLLRSKTVIYVTHQVE 802
GGQKQRI IARAL ++ I L D+ S++D+++ + K ++ + KT+I + H++
Sbjct: 1361 GGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA 1420
Query: 803 FLPAADLILVMKDGKITQAGKYNDILNSGTDFMVLVGAHQQALSALDSI 851
+ +D I+V +N+ +G+ F+ G H++ LS D +
Sbjct: 1421 SIKRSDKIVV-----------FNNPDRTGS-FVQAHGTHEELLSVQDGV 1457
|
Length = 1466 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 1e-12
Identities = 57/227 (25%), Positives = 92/227 (40%), Gaps = 43/227 (18%)
Query: 631 NNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK-------- 682
LR ++L+V G VA+ G G+GK++LL I+G V SG + G
Sbjct: 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHE 74
Query: 683 ------AYVAQSPWI-QSGNIEDNILFG------KPMDREKYDRVLEACSLKKDLEILSF 729
AYV + I +E+N+L G K + V E K+
Sbjct: 75 RARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKER----- 129
Query: 730 GDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL 789
+R LSGG++Q + IARAL + L D+P + + E + +
Sbjct: 130 -----RNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL-----APKIVEEIFEAI 179
Query: 790 RS------KTVIYVTHQVEF-LPAADLILVMKDGKITQAGKYNDILN 829
+ T++ V F L AD V+++G+I +G ++L
Sbjct: 180 KELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLA 226
|
Length = 237 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.2 bits (169), Expect = 1e-12
Identities = 57/220 (25%), Positives = 102/220 (46%), Gaps = 20/220 (9%)
Query: 1072 LRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIG-LHDLRS 1130
L + G GI+G+ GSGKSTL L ++ P G++++ GI+ L +R
Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRK 77
Query: 1131 RLSIIPQDP-TMFEG-TVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNK------EGKLD 1182
+ I+ Q+P T F G TV +L + E + C E+R + E L+
Sbjct: 78 LVGIVFQNPETQFVGRTVEEDL----AFGPENL------CLPPIEIRKRVDRALAEIGLE 127
Query: 1183 SRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTAT-DNLIQQTLRQHFSDC 1241
+ + S GQ Q V L +L + + L+ DE T+ +D + ++++ + H
Sbjct: 128 KYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGK 187
Query: 1242 TVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKS 1281
T++ I H + + D+D ++++ G I P +L + S
Sbjct: 188 TIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSDVS 227
|
Length = 274 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 1e-12
Identities = 59/241 (24%), Positives = 104/241 (43%), Gaps = 32/241 (13%)
Query: 612 SSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----L 666
+ E + + N + L DI + + A+ G G GKS+LL C L
Sbjct: 2 TMEIILSTKNLNLWY---GEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDL 58
Query: 667 GEVPKISGTLKLCGTK---------------AYVAQSPWIQSGNIEDNILFGKPM----D 707
+I+G + G V Q P +I +N+ +G + +
Sbjct: 59 IPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKN 118
Query: 708 REKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDD 767
++ D ++E LK D+ + + ++LSGGQ+QR+ IAR L + ++ L D+
Sbjct: 119 KKTLDTIVEKS-LKGAALWDEVKDR--LHDSALSLSGGQQQRLCIARTLAVNPEVILMDE 175
Query: 768 PFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLP-AADLILVMKDGKITQAGKYND 826
P SA+D + + ++++ L + TVI VTH ++ +D M GK+ + K
Sbjct: 176 PCSALDPIATAKI-EDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQ 234
Query: 827 I 827
I
Sbjct: 235 I 235
|
Length = 253 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.8 bits (168), Expect = 1e-12
Identities = 56/192 (29%), Positives = 93/192 (48%), Gaps = 28/192 (14%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LGEVPKISGTLKLCGTKAY----- 684
L DINL ++ A+ G G GKS+ L C+ L KI G + L G Y
Sbjct: 20 LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVD 79
Query: 685 ----------VAQSPWIQSGNIEDNILFGKPM----DREKYDRVLEACSLKKDLEILSFG 730
V Q P +I DN+ +G + D+++ D+++E +LKK
Sbjct: 80 VVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEW-ALKKAALWDEVK 138
Query: 731 DQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLR 790
D + + + LSGGQ+QR+ IAR + D+ L D+P SA+D + +++++ L +
Sbjct: 139 DD--LKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDP-ISTLKIEDLMVELKK 195
Query: 791 SKTVIYVTHQVE 802
T++ VTH ++
Sbjct: 196 EYTIVIVTHNMQ 207
|
Length = 251 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 1e-12
Identities = 60/229 (26%), Positives = 113/229 (49%), Gaps = 33/229 (14%)
Query: 1072 LRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFR---IVE--PTAGEIVIDGINI--SSIG 1124
L+ + T ++G +G GKST ++TL R ++ GE+++DG +I S I
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78
Query: 1125 LHDLRSRLSIIPQDPTMFEGTVRNN------LDPLEEYK--DEEIWEALDKCQLGDEVRN 1176
++ LR R+ ++ Q P F ++ +N +++ K DE + ++L L DEV++
Sbjct: 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKD 138
Query: 1177 KEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQ 1236
R+ ++ S GQ+Q +C+ R L + +VL++DE T+++D + I++ +++
Sbjct: 139 -------RLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQE 191
Query: 1237 HFSDCTVITIAH------RITSVIDSDMVLLLSHGIIEEYDSPTKLLEN 1279
D T++ + H RI SD +G I E+ L N
Sbjct: 192 LKKDYTIVIVTHNMQQASRI-----SDKTAFFLNGEIVEFGDTVDLFTN 235
|
Length = 250 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 1e-12
Identities = 57/239 (23%), Positives = 115/239 (48%), Gaps = 24/239 (10%)
Query: 1056 DILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAG---- 1111
+I NL + Y + L+ + P T ++G +G GKSTL++ L R+ + G
Sbjct: 5 NIENLDLFYGENQ--ALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKIT 62
Query: 1112 -EIVIDGINI-SSIGLHDLRSRLSIIPQDPTMFEGTVRNNL------DPLEEYK--DEEI 1161
++ +DG +I +I + DLR ++ ++ Q P F ++ N+ +++ K DE +
Sbjct: 63 GKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVV 122
Query: 1162 WEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATAS 1221
+L L DEV++ R+ + S GQ+Q +C+ R + + V+++DE T++
Sbjct: 123 ERSLRGAALWDEVKD-------RLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSA 175
Query: 1222 VDTATDNLIQQTLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLEN 1279
+D + I++ + + + T++ + H + SD G + E+D + N
Sbjct: 176 LDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFSN 234
|
Length = 249 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 1e-12
Identities = 49/203 (24%), Positives = 86/203 (42%), Gaps = 38/203 (18%)
Query: 626 WDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILG--EVPKISGTLKLCGTKA 683
S L++++ K G A+ G G+GKS+LL+ + G +SG + + G
Sbjct: 16 SPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPL 75
Query: 684 YVAQSPWIQSGNI-EDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINL 742
+S G + +D+IL V E L F + RG+
Sbjct: 76 D-KRSFRKIIGYVPQDDILHP-------TLTVRET---------LMFAAKL----RGL-- 112
Query: 743 SGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRS-----KTVIYV 797
SGG+++R+ IA L + + D+P S +D+ + ++ LLR +T+I
Sbjct: 113 SGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQ-----VMSLLRRLADTGRTIICS 167
Query: 798 THQV--EFLPAADLILVMKDGKI 818
HQ E D +L++ G++
Sbjct: 168 IHQPSSEIFELFDKLLLLSQGRV 190
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 1e-12
Identities = 64/205 (31%), Positives = 94/205 (45%), Gaps = 34/205 (16%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS 1130
VL ++ G ++G G+GKSTL++ + +V P G I + +
Sbjct: 19 VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIK-----------RNGKL 67
Query: 1131 RLSIIPQ----DPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVT 1186
R+ +PQ D T+ TV L K E+I AL + Q G + KL
Sbjct: 68 RIGYVPQKLYLDTTL-PLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKL----- 121
Query: 1187 ENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDT----ATDNLIQQTLRQHFSDCT 1242
S G+ Q V L R LL + ++LVLDE T VD A +LI Q LR+ DC
Sbjct: 122 ------SGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQ-LRREL-DCA 173
Query: 1243 VITIAHRITSVI-DSDMVLLLSHGI 1266
V+ ++H + V+ +D VL L+H I
Sbjct: 174 VLMVSHDLHLVMAKTDEVLCLNHHI 198
|
Length = 251 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.1 bits (171), Expect = 1e-12
Identities = 63/230 (27%), Positives = 107/230 (46%), Gaps = 23/230 (10%)
Query: 1056 DILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRI---VEPTA-- 1110
+I N Y VL L T +G +G GKST ++ L ++ +E T+
Sbjct: 82 EIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHE 141
Query: 1111 GEIVIDGINISS--IGLHDLRSRLSIIPQDPTMFEGTVRNNL--DPLEE-YKDEEIWE-- 1163
GEI G N S I +LR+R+ ++ Q PT FE ++ +N+ P D +I E
Sbjct: 142 GEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKI 201
Query: 1164 ---ALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATA 1220
+L L DEV++ + + G S GQ+Q +C+ R + + +VL++DE T+
Sbjct: 202 VEKSLKSAALWDEVKDD-------LDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTS 254
Query: 1221 SVDTATDNLIQQTLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEE 1269
++D I++ + + ++I + H + SD + G IEE
Sbjct: 255 ALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEE 304
|
Length = 329 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 1e-12
Identities = 66/231 (28%), Positives = 104/231 (45%), Gaps = 47/231 (20%)
Query: 601 QSDVVEKHPRGSSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSS 660
+++ +TA+E+ + N + + L DI++++ A G G GKS+
Sbjct: 10 ALPLLDVLNLSDEQTALEVRNLNLFYG---DKQALFDISMRIPKNRVTAFIGPSGCGKST 66
Query: 661 LLSCI-----LGEVPKISGTLKLCGTKAY---------------VAQSPWIQSGNIEDNI 700
LL C L + +I G ++L G Y V Q P +I +N+
Sbjct: 67 LLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENV 126
Query: 701 LFGKPMDREKYDRVL-EAC--SLK--------KDLEILSFGDQTVIGERGINLSGGQKQR 749
++G + RVL EA SL+ KD + E LSGGQ+QR
Sbjct: 127 VYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDR----------LHENAFGLSGGQQQR 176
Query: 750 IQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSK-TVIYVTH 799
+ IARA+ + ++ L D+P SA+D S L E L+ L+SK T++ VTH
Sbjct: 177 LVIARAIAIEPEVLLLDEPTSALDPI--STLKIEELITELKSKYTIVIVTH 225
|
Length = 272 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 1e-12
Identities = 67/207 (32%), Positives = 99/207 (47%), Gaps = 37/207 (17%)
Query: 631 NNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTLKLCGTKAYVAQS- 688
L ++L + G VAV G G GKS+LL + G E P +G L L GT A +A++
Sbjct: 24 ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS-AGEL-LAGT-APLAEAR 80
Query: 689 -------------PWIQSGNIEDNILFGKPMD-REKYDRVLEACSLKKDLEILSFGDQTV 734
PW + DN+ G R+ + L A L D+
Sbjct: 81 EDTRLMFQDARLLPW---KKVIDNVGLGLKGQWRDAALQALAAVGL---------ADRA- 127
Query: 735 IGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSK-- 792
E LSGGQKQR+ +ARAL + L D+P A+DA T + ++++ L +
Sbjct: 128 -NEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEM-QDLIESLWQQHGF 185
Query: 793 TVIYVTHQV-EFLPAADLILVMKDGKI 818
TV+ VTH V E + AD +L++++GKI
Sbjct: 186 TVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
Length = 257 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 2e-12
Identities = 47/201 (23%), Positives = 83/201 (41%), Gaps = 37/201 (18%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK--AYVAQSPWIQ 692
L +++L + G R+ + G G+GKS+LL + GE+ SG + Y++Q P
Sbjct: 19 LENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEP--- 75
Query: 693 SGNIEDNIL------FGKPMDREK-YDRVLEACSLKKDLEILSFGDQTVIGER------- 738
+ E +L FG+ + + + D + +
Sbjct: 76 PLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARA 135
Query: 739 -------GI--------NLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKE 783
G +LSGG ++R+ +ARAL ++ D+ L D+P + +D + L ++
Sbjct: 136 EEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWL-ED 194
Query: 784 VLLGLLRSKTVIYVTHQVEFL 804
L TVI V+H FL
Sbjct: 195 YLKR--YPGTVIVVSHDRYFL 213
|
Length = 530 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.1 bits (170), Expect = 2e-12
Identities = 55/220 (25%), Positives = 92/220 (41%), Gaps = 36/220 (16%)
Query: 1086 GIVGRTGSGKSTLIQTLFRIVEP-----TAGEIVIDGINISSIG---LHDLR-SRLSIIP 1136
GIVG +GSGKS L + + ++ GEI+ DG ++ S+ L +R +++I
Sbjct: 35 GIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIF 94
Query: 1137 QDPTMFEGTVRNNLDPLEEYK-DEEIWEALDKCQLGD---EVRNKEGKLDSRV--TENGE 1190
QDP +L+P+ ++I E L G E + + +L V +
Sbjct: 95 QDP-------MTSLNPV--MTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPER 145
Query: 1191 NWSM-------GQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLR--QHFSDC 1241
G RQ V + L K+L+ DE T ++D I L+ Q
Sbjct: 146 RLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGT 205
Query: 1242 TVITIAHRITSVID--SDMVLLLSHGIIEEYDSPTKLLEN 1279
+I I H + V+ +D V ++ G I E ++ +N
Sbjct: 206 ALILITHDL-GVVAEIADRVAVMYAGRIVEEGPVEEIFKN 244
|
Length = 316 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.5 bits (167), Expect = 2e-12
Identities = 62/193 (32%), Positives = 95/193 (49%), Gaps = 30/193 (15%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LGEVPKISGTLKLCGTKAY----- 684
L +IN+K+ A+ G G GKS+ L + L E KI G + G Y
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82
Query: 685 ----------VAQSPWIQSGNIEDNILFGKPM----DREKYDRVLEACSLKKDLEILSFG 730
V Q+P +I DNI +G + D++K D ++E SLKK
Sbjct: 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQ-SLKKSALWNEVK 141
Query: 731 DQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDA-HTGSHLFKEVLLGLL 789
D+ + ++LSGGQ+QR+ IAR L + ++ L D+P SA+D TG +E+++ L
Sbjct: 142 DK--LNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGK--IEELIINLK 197
Query: 790 RSKTVIYVTHQVE 802
S T+I VTH ++
Sbjct: 198 ESYTIIIVTHNMQ 210
|
Length = 254 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.5 bits (167), Expect = 2e-12
Identities = 50/197 (25%), Positives = 103/197 (52%), Gaps = 27/197 (13%)
Query: 1072 LRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRI--VEPTA---GEIVIDGINISSIGLH 1126
++ ++ FP T I+G +G GKST+++++ R+ + P+A G+I++D +I G+
Sbjct: 20 VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79
Query: 1127 --DLRSRLSIIPQDPTMFEG-TVRNNLDPLEEYK----------DEEIWEALDKCQLGDE 1173
+R R+ ++ Q P F ++ +N+ + YK DE + +L + L DE
Sbjct: 80 PVSIRRRVGMVFQKPNPFPAMSIYDNV--IAGYKLNGRVNRSEADEIVESSLKRVALWDE 137
Query: 1174 VRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQT 1233
V++ R+ N S GQ+Q +C+ R + K +V+++DE +++D + I++
Sbjct: 138 VKD-------RLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEEL 190
Query: 1234 LRQHFSDCTVITIAHRI 1250
+ + T+I + H +
Sbjct: 191 IEELKEKYTIIIVTHNM 207
|
Length = 252 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.4 bits (172), Expect = 2e-12
Identities = 57/216 (26%), Positives = 109/216 (50%), Gaps = 28/216 (12%)
Query: 1087 IVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS----RLSIIPQD-PTM 1141
I+G +GSGKST+++ L R++EPT G+++IDG++I+ I +LR +++++ Q M
Sbjct: 59 IMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALM 118
Query: 1142 FEGTVRNNLD--------PLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWS 1193
TV +N EE + E+ +AL + L + + +L S
Sbjct: 119 PHMTVLDNTAFGMELAGINAEE-RREKALDALRQVGLENYAHSYPDEL-----------S 166
Query: 1194 MGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTL--RQHFSDCTVITIAHRIT 1251
G RQ V L R L +L++DEA +++D +Q L Q T++ I+H +
Sbjct: 167 GGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD 226
Query: 1252 SVID-SDMVLLLSHGIIEEYDSPTKLLENKSSSFAQ 1286
+ D + ++ +G + + +P ++L N ++ + +
Sbjct: 227 EAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVR 262
|
Length = 400 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 2e-12
Identities = 62/209 (29%), Positives = 98/209 (46%), Gaps = 32/209 (15%)
Query: 1087 IVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS-RLSIIPQDPTMFEGT 1145
I+G GSGKSTL + L ++EPT+GE++ID + G + RS R+ +I QDP+
Sbjct: 44 IIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPL-HFGDYSYRSQRIRMIFQDPS----- 97
Query: 1146 VRNNLDPLEEYKDEEIWEALD-----KCQLGDEVRNKE--------GKLDSRVTENGENW 1192
+L+P + I + LD L E R K+ G L +
Sbjct: 98 --TSLNP-----RQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHML 150
Query: 1193 SMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATD----NLIQQTLRQHFSDCTVITIAH 1248
+ GQ+Q + L R L+ + KV++ DEA AS+D + NL+ + + +T
Sbjct: 151 APGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHL 210
Query: 1249 RITSVIDSDMVLLLSHGIIEEYDSPTKLL 1277
+ I SD VL++ G + E S +L
Sbjct: 211 GMMKHI-SDQVLVMHQGEVVERGSTADVL 238
|
Length = 267 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 3e-12
Identities = 65/273 (23%), Positives = 106/273 (38%), Gaps = 37/273 (13%)
Query: 555 GKILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIASF-LCLDDLQSDVVEKHPRGSS 613
G++ S+L+ F D I + +L R+A F L+ Q D + G
Sbjct: 333 GQVHSSLSWFI----------DNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRR 382
Query: 614 ETAIEIVDG-----NFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGE 668
+ D N + L ++N +V G R+ + G G+GK+SLL + G
Sbjct: 383 IDFDDNADHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGL 442
Query: 669 VPKISGTLKLCGTKA--YVAQSPWIQSGNIEDNILFGKPMDREKYD-----RVLEACSLK 721
P SG + + A ++ Q P++ G + + + + P + VL L
Sbjct: 443 WPWGSGRISMPADSALLFLPQRPYLPQGTLREALCY--PNAAPDFSDAELVAVLHKVGLG 500
Query: 722 K---DLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGS 778
L+ D+ LSGG++QR+ AR L D+ SA+D T
Sbjct: 501 DLAERLDEEDRWDRV--------LSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETED 552
Query: 779 HLFKEVLLGLLRSKTVIYVTHQVEFLPAADLIL 811
L+ ++L L TVI V H+ L
Sbjct: 553 RLY-QLLKEELPDATVISVGHRPTLWNFHSRQL 584
|
Length = 604 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 3e-12
Identities = 58/222 (26%), Positives = 97/222 (43%), Gaps = 40/222 (18%)
Query: 637 DINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK-------------- 682
D + + A+ G GSGK++L+ I G G + L G
Sbjct: 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEK 74
Query: 683 ---AYVAQS----PWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVI 735
YV Q P + ++ N+ +G R R+ + +E+L G ++
Sbjct: 75 RRIGYVFQEARLFPHL---SVRGNLRYGMKRARPSERRISFE----RVIELLGIGH--LL 125
Query: 736 GERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL--LGLLRSKT 793
G LSGG+KQR+ I RAL + L D+P +A+D E+L L L ++
Sbjct: 126 GRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALD----DPRKYEILPYLERLHAEF 181
Query: 794 ---VIYVTHQV-EFLPAADLILVMKDGKITQAGKYNDILNSG 831
++YV+H + E L AD ++V++DG++ AG ++ S
Sbjct: 182 GIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASP 223
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 3e-12
Identities = 55/210 (26%), Positives = 90/210 (42%), Gaps = 28/210 (13%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK---ISGTLKLCGTK--------- 682
L D++L V G +A+ G+ GSGK++LL I G V SG + G
Sbjct: 23 LNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82
Query: 683 -AYVAQSP-WIQSGNIEDNILFGKPM-----DREKYDRVLEACSLKKDLEILSFGDQTVI 735
AYV Q + + + + + + + + L +DL + G V
Sbjct: 83 VAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVK 142
Query: 736 GERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRS-KTV 794
G +SGG+++R+ IA L D + + D+P S +D+ T + L L R + V
Sbjct: 143 G-----ISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFT-ALNLVSTLSQLARRNRIV 196
Query: 795 IYVTHQ--VEFLPAADLILVMKDGKITQAG 822
I HQ + D IL++ G+I +G
Sbjct: 197 ILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 3e-12
Identities = 56/219 (25%), Positives = 99/219 (45%), Gaps = 29/219 (13%)
Query: 1072 LRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSR 1131
+RG++ G G++G G+GK+T I+ L +++PT+G + G ++ ++R R
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR-EPREVRRR 74
Query: 1132 LSIIPQDPTMFEG-TVRNNLD--------PLEEYKDEEIWEALDKCQLGDEVRNKEGKLD 1182
+ I+ QD ++ + T NL P E + E I E LD L E ++ K
Sbjct: 75 IGIVFQDLSVDDELTGWENLYIHARLYGVPGAERR-ERIDELLDFVGLL-EAADRLVK-- 130
Query: 1183 SRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDN----LIQQTLRQHF 1238
+S G R+ + + R L+ + +VL LDE T +D T I++ +
Sbjct: 131 --------TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEF- 181
Query: 1239 SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKL 1276
T++ H + D V ++ HG I +P +L
Sbjct: 182 -GMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 3e-12
Identities = 51/188 (27%), Positives = 93/188 (49%), Gaps = 24/188 (12%)
Query: 1059 NLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGI 1118
NL RY V+ G++ + G G++G G+GK+T + +V+P +G+I++DG
Sbjct: 5 NLSKRYGKRK--VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQ 62
Query: 1119 NISSIGLHDLRSRLSII--PQDPTMFEG-TVRNNLD-------PLEEYKDEEIWEALDKC 1168
+I+ + +H R+RL I PQ+ ++F TV N+ ++ ++E++ E L++
Sbjct: 63 DITKLPMHK-RARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEF 121
Query: 1169 QLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDN 1228
+ +R + S G+R+ V + R L K L+LDE A VD
Sbjct: 122 HI-THLRKS----------KASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQ 170
Query: 1229 LIQQTLRQ 1236
IQ+ ++
Sbjct: 171 DIQKIIKI 178
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 3e-12
Identities = 60/220 (27%), Positives = 102/220 (46%), Gaps = 42/220 (19%)
Query: 633 PTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--------TKAY 684
L+ I+ + G A+ G G+GKS+L+ I G VP SGTL++ G KA+
Sbjct: 25 EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAH 84
Query: 685 ------VAQSPWI-QSGNIEDNILFGKPMDREKYDRVLE-----ACSLKKDLE--ILSFG 730
V Q P + + ++++NILFG P + ++ + C L D L
Sbjct: 85 QLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVA 144
Query: 731 DQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLR 790
D+ Q ++I R L +D+ I + D+P +++ LF + L
Sbjct: 145 DR---------------QIVEILRGLMRDSRILILDEPTASLTPAETERLFSR--IRELL 187
Query: 791 SKTV--IYVTHQV-EFLPAADLILVMKDGKITQAGKYNDI 827
++ V ++++H++ E AD I VM+DG I +GK D+
Sbjct: 188 AQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADL 227
|
Length = 510 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 4e-12
Identities = 49/203 (24%), Positives = 101/203 (49%), Gaps = 22/203 (10%)
Query: 1059 NLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVE--PTA---GEI 1113
NL V Y L ++ + P T +G +G GKST+++ R+ + P G++
Sbjct: 15 NLNVYYGSFL--AVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKV 72
Query: 1114 VIDGINI--SSIGLHDLRSRLSIIPQDPTMFEGTVRNNLD---PLEEYK---DEEIWEAL 1165
G N+ + ++R R+ ++ Q P F ++ +N+ + YK DE + +L
Sbjct: 73 TFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSL 132
Query: 1166 DKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTA 1225
+ L DEV++K + ++G + S GQ+Q +C+ R + + +V+++DE +++D
Sbjct: 133 RQAALWDEVKDK-------LKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPI 185
Query: 1226 TDNLIQQTLRQHFSDCTVITIAH 1248
+ I++ + + T+I + H
Sbjct: 186 STLRIEELMHELKEQYTIIIVTH 208
|
Length = 264 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 4e-12
Identities = 74/225 (32%), Positives = 106/225 (47%), Gaps = 50/225 (22%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSL---LSCIL----GEVPKISGT---------LKL 678
L+ IN K G VA+ G G+GKS+L + IL GEV I G L++
Sbjct: 18 LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV-LIKGEPIKYDKKSLLEV 76
Query: 679 CGTKAYVAQSPWIQ--SGNIEDNILFGKPMD-----REKYDRVLEACSLKKDLEILSFGD 731
T V Q+P Q + +E+++ FG P++ E RV EA LK
Sbjct: 77 RKTVGIVFQNPDDQLFAPTVEEDVAFG-PLNLGLSKEEVEKRVKEA--LKA--------- 124
Query: 732 QTVIGERGI------NLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL 785
+G G +LSGGQK+R+ IA L +I + D+P S +D S + K L
Sbjct: 125 ---VGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMK--L 179
Query: 786 LGLLRSK--TVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDI 827
L L + T+I TH V+ +P AD + VM DGKI + G ++
Sbjct: 180 LYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEV 224
|
Length = 275 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 5e-12
Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 40/167 (23%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS 1130
+LRG++ P G T ++GR G GK+TL++TL ++ +G I +DG +I+ + H+ R+
Sbjct: 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHE-RA 73
Query: 1131 RLSI--IPQD----PTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGK---- 1180
R I +PQ P + TV NL G + +
Sbjct: 74 RAGIAYVPQGREIFPRL---TVEENL------------------LTGLAALPRRSRKIPD 112
Query: 1181 --------LDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEAT 1219
L + G + S GQ+Q + + R L+ + K+L+LDE T
Sbjct: 113 EIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPT 159
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 5e-12
Identities = 43/156 (27%), Positives = 84/156 (53%), Gaps = 6/156 (3%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS 1130
V+ ++ G G++G G+GK+T + +V P +G+I++D +I+ + +H R+
Sbjct: 19 VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMH-KRA 77
Query: 1131 RLSI--IPQDPTMFEG-TVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTE 1187
RL I +PQ+ ++F TV +N+ + E +++++ +A K +L + +E +
Sbjct: 78 RLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALL--EEFHITHLRDS 135
Query: 1188 NGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVD 1223
+ S G+R+ V + R L K ++LDE A VD
Sbjct: 136 KAYSLSGGERRRVEIARALAANPKFILLDEPFAGVD 171
|
Length = 243 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 5e-12
Identities = 55/224 (24%), Positives = 102/224 (45%), Gaps = 33/224 (14%)
Query: 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIV 1114
+++ N+ R+ L ++ + G G++G G+GK+T I+ + I+ P +GE++
Sbjct: 1 LEVENVTKRFGRVT--ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVL 58
Query: 1115 IDGINISSIGLHDLRSRLSIIPQD----PTMFEGTVRNNLDPLEEYKD-------EEIWE 1163
DG + R+R+ +P++ P M V + L L + K I E
Sbjct: 59 FDGKPLDI----AARNRIGYLPEERGLYPKM---KVIDQLVYLAQLKGLKKEEARRRIDE 111
Query: 1164 ALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVD 1223
L++ +L + + RV E S G +Q V ++ ++L+LDE + +D
Sbjct: 112 WLERLELSE-------YANKRV----EELSKGNQQKVQFIAAVIHDPELLILDEPFSGLD 160
Query: 1224 TATDNLIQQTLR-QHFSDCTVITIAHRITSVID-SDMVLLLSHG 1265
L++ +R + TVI H++ V + D VLLL+ G
Sbjct: 161 PVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKG 204
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 5e-12
Identities = 58/211 (27%), Positives = 85/211 (40%), Gaps = 47/211 (22%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWI--- 691
L+D++ +V G R+ + G G+GKS+LL + G P SGT+ + G + +
Sbjct: 38 LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVS------SLLGL 91
Query: 692 -------QSGNIEDNILFG-------KPMDREKYDRVLEACSLKKDLEILSFGDQTVIGE 737
+G +NI + EK D ++E L F D V
Sbjct: 92 GGGFNPELTG--RENIYLNGRLLGLSRKEIDEKIDEIIEFSELGD------FIDLPV--- 140
Query: 738 RGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRS-----K 792
S G K R+ A A + DI L D+ + DA F+E LR K
Sbjct: 141 --KTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAA-----FQEKCQRRLRELLKQGK 193
Query: 793 TVIYVTHQVEFLPA-ADLILVMKDGKITQAG 822
TVI V+H + D LV++ GKI G
Sbjct: 194 TVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 6e-12
Identities = 56/191 (29%), Positives = 91/191 (47%), Gaps = 24/191 (12%)
Query: 634 TLRDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LGEVPKISGTLKLCGTKAY---- 684
L ++L + A+ G GSGKS+LL I L I+G++ G Y
Sbjct: 20 ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRT 79
Query: 685 -----------VAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQT 733
V Q P +I +N+++G + K +VL+ +++K L+ S D+
Sbjct: 80 DTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDE-AVEKSLKGASIWDEV 138
Query: 734 --VIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRS 791
+ + + LSGGQ+QR+ IAR L I L D+P SA+D + + +E LLGL
Sbjct: 139 KDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKI-EETLLGLKDD 197
Query: 792 KTVIYVTHQVE 802
T++ VT ++
Sbjct: 198 YTMLLVTRSMQ 208
|
Length = 252 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 70.0 bits (171), Expect = 8e-12
Identities = 80/349 (22%), Positives = 139/349 (39%), Gaps = 75/349 (21%)
Query: 968 SSLTFAFSLVLLISIP--------------KGVIEPAIAGLAVT------YGLNL--NML 1005
+ L AF+ +L SIP G + PA A +++ LN+ N+L
Sbjct: 519 AQLLSAFNSFILNSIPVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLL 578
Query: 1006 QAWVIWN--LCNLENKIISVERILQYTCISSEPPL-----VIEESRPDCSWPTHGEVDIL 1058
V N L +E ++S ERIL + PPL I SW + L
Sbjct: 579 SQVVNANVSLQRIEELLLSEERIL-----AQNPPLQPGAPAISIKNGYFSWDSKTSKPTL 633
Query: 1059 NLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGI 1118
+ + P G IVG TG GK++LI + + V
Sbjct: 634 S--------------DINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV---- 675
Query: 1119 NISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKE 1178
+R ++ +PQ +F TVR N+ +++ E W A+D L ++
Sbjct: 676 --------VIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLP 727
Query: 1179 GKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF 1238
G+ + + E G N S GQ+Q V + R + S + + D+ +++D Q F
Sbjct: 728 GRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDA-------HVAHQVF 780
Query: 1239 SDC--------TVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLEN 1279
C T + + +++ + D ++L+S G+I+E + +L ++
Sbjct: 781 DSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKS 829
|
Length = 1495 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 8e-12
Identities = 50/163 (30%), Positives = 72/163 (44%), Gaps = 22/163 (13%)
Query: 671 KISGTLKLCGTKAYVAQSPWIQ--SGNIEDNILFG-------KPMDREKYDRVLEACSLK 721
KI +L + V Q P Q IE +I+FG K ++ L L
Sbjct: 107 KIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLD 166
Query: 722 KD-LEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHL 780
LE FG LSGGQK+R+ IA L +I +FD+P + +D +
Sbjct: 167 DSYLERSPFG-----------LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEM 215
Query: 781 FKEVLLGLLRSKTVIYVTHQVE-FLPAADLILVMKDGKITQAG 822
+ +L +KTV +TH +E L AD ++VM GKI + G
Sbjct: 216 MQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTG 258
|
Length = 320 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 8e-12
Identities = 47/198 (23%), Positives = 82/198 (41%), Gaps = 53/198 (26%)
Query: 1070 LVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLR 1129
++L+ L+ G + I G +G+GKS+L + L + +G I +
Sbjct: 15 VLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPE-----------G 63
Query: 1130 SRLSIIPQDPTMFEGTVRNNLDPLEEYKDEEI---WEALDKCQLGDEVRNKEGKLDSRVT 1186
L +PQ P + GT+R E++ W
Sbjct: 64 EDLLFLPQRPYLPLGTLR-----------EQLIYPW------------------------ 88
Query: 1187 ENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITI 1246
+ S G++Q + R+LL K K + LDEAT+++D +++ + Q L++ TVI++
Sbjct: 89 --DDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELG--ITVISV 144
Query: 1247 AHRITSVIDSDMVLLLSH 1264
HR + D VL L
Sbjct: 145 GHRPSLWKFHDRVLDLDG 162
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.9 bits (167), Expect = 8e-12
Identities = 63/225 (28%), Positives = 105/225 (46%), Gaps = 50/225 (22%)
Query: 1072 LRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS- 1130
L ++ P G G++G +G+GKSTLI+ + + PT+G +++DG +++++ +LR
Sbjct: 21 LNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80
Query: 1131 RLSI--IPQ------DPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLD 1182
R I I Q T+F+ N PLE L K ++
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFD----NVALPLE----------LAG-------TPKA-EIK 118
Query: 1183 SRVTENGE-------------NWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNL 1229
+RVTE E S GQ+Q V + R L KVL+ DEAT+++D AT
Sbjct: 119 ARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRS 178
Query: 1230 IQQTLRQHFSD--CTVITIAHRITSVIDS--DMVLLLSHG-IIEE 1269
I + L+ + T++ I H + V+ D V ++ G ++E+
Sbjct: 179 ILELLKDINRELGLTIVLITHEM-DVVKRICDRVAVIDAGRLVEQ 222
|
Length = 343 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 8e-12
Identities = 61/219 (27%), Positives = 103/219 (47%), Gaps = 36/219 (16%)
Query: 631 NNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCI-LGEVPKISGTLKLCGTKAYVAQSP 689
+ L DI L G + + G G+GKSSLL + L E+P+ SGTL + G +++P
Sbjct: 14 AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPR-SGTLNIAGNHFDFSKTP 72
Query: 690 WIQSG--------------------NIEDNILFGKPMDREKYDRVL---EACSLKKDLEI 726
++ ++ N L P RVL + +L + ++
Sbjct: 73 SDKAIRELRRNVGMVFQQYNLWPHLTVQQN-LIEAPC------RVLGLSKDQALARAEKL 125
Query: 727 LSFGDQTVIGER-GINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL 785
L +R ++LSGGQ+QR+ IARAL + + LFD+P +A+D + + ++
Sbjct: 126 LERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVS-II 184
Query: 786 LGLLRSK-TVIYVTHQVEFL-PAADLILVMKDGKITQAG 822
L + T + VTH+VE A ++ M++G I + G
Sbjct: 185 RELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQG 223
|
Length = 242 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 9e-12
Identities = 62/225 (27%), Positives = 96/225 (42%), Gaps = 38/225 (16%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQS---PWI 691
L +N V G +VA+ G GSGKS++L ++ P G +++ G + Y P +
Sbjct: 16 LDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLV 75
Query: 692 QSG-----NIEDNI-----LFGKPMDREKYDRVLEACSLKKD-------------LEILS 728
+ + + I F + D V EA L L+++
Sbjct: 76 PADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVG 135
Query: 729 FGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL--- 785
D+ LSGGQ+QR+ IARAL + LFD+ SA+D L EVL
Sbjct: 136 LADKA--DHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALD----PELVGEVLNVI 189
Query: 786 --LGLLRSKTVIYVTHQVEFL-PAADLILVMKDGKITQAGKYNDI 827
L T++ VTH++ F AD + G+I + GK ++I
Sbjct: 190 RRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEI 234
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.6 bits (162), Expect = 9e-12
Identities = 56/205 (27%), Positives = 100/205 (48%), Gaps = 34/205 (16%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDG--------INISS 1122
+L G++ T I+G +G GKST ++ L R+ E E+ ++G I
Sbjct: 22 ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE-LESEVRVEGRVEFFNQNIYERR 80
Query: 1123 IGLHDLRSRLSIIPQDPTMFEGTVRNNL---------DPLEEYKDEEIWEALDKCQLGDE 1173
+ L+ LR ++S++ P +F +V +N+ P E D+ + AL L DE
Sbjct: 81 VNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEI-DDIVESALKDADLWDE 139
Query: 1174 VRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTAT----DNL 1229
+++K + ++ + S GQ+Q +C+ R L K KVL++DE +D ++L
Sbjct: 140 IKHK-------IHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESL 192
Query: 1230 IQQ-TLRQHFSDCTVITIAHRITSV 1253
IQ LR S+ T++ ++H + V
Sbjct: 193 IQSLRLR---SELTMVIVSHNLHQV 214
|
Length = 261 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 69.2 bits (169), Expect = 1e-11
Identities = 69/254 (27%), Positives = 118/254 (46%), Gaps = 32/254 (12%)
Query: 633 PTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCI--LGEVPKISGTLKLCGTKAY------ 684
P L ++ V +V V G G+GKSS+L+ + + E+ K + C +
Sbjct: 1250 PVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLR 1309
Query: 685 -----VAQSPWIQSGNIEDNI-LFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGER 738
+ QSP + SG + NI F + D + + LE +K ++ FG + E
Sbjct: 1310 RVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLW-EALERAHIKDVIDRNPFGLDAEVSEG 1368
Query: 739 GINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVT 798
G N S GQ+Q + +ARAL + + I + D+ ++VD T S L + + +S T++ +
Sbjct: 1369 GENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDS-LIQRTIREEFKSCTMLVIA 1427
Query: 799 HQVEFLPAADLILVMKDGKITQAGKYNDIL-NSGTDFMVLVG----AHQQALSALDSIEG 853
H++ + D ILV+ G++ + ++L + F +V A+ Q LS L
Sbjct: 1428 HRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTGPANAQYLSNL----- 1482
Query: 854 GPVSERISMNKENG 867
V ER +ENG
Sbjct: 1483 --VFER----RENG 1490
|
Length = 1495 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 64.4 bits (158), Expect = 1e-11
Identities = 47/218 (21%), Positives = 85/218 (38%), Gaps = 67/218 (30%)
Query: 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIV 1114
+++ + R+ L G++ + G ++G G+GKSTL++ L + +P +GEI+
Sbjct: 1 LELRGITKRFGGVK--ALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEIL 58
Query: 1115 IDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEEYKDEEIWEALDK-----CQ 1169
+G + P +A Q
Sbjct: 59 ---------------------------VDGKEVSFASP---------RDARRAGIAMVYQ 82
Query: 1170 LGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTA-TDN 1228
L S+G+RQ+V + R L + +++L+LDE TA++ A +
Sbjct: 83 L----------------------SVGERQMVEIARALARNARLLILDEPTAALTPAEVER 120
Query: 1229 LIQQTLRQHFSDCTVITIAHRITSVID-SDMVLLLSHG 1265
L + R VI I+HR+ V + +D V +L G
Sbjct: 121 LFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDG 158
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 1e-11
Identities = 61/222 (27%), Positives = 102/222 (45%), Gaps = 30/222 (13%)
Query: 632 NPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSC---ILGEVP--KISGTLKLCGTKAY-- 684
L DINL ++ A G G GKS+ L C + VP K+ G L + G Y
Sbjct: 18 KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSV 77
Query: 685 -------------VAQSPWIQSGNIEDNILFGKPM-----DREKYDRVLEACSLKKDLEI 726
V Q P +I DN+ +G + +++K D ++E SL
Sbjct: 78 DTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEK-SLTSVGLW 136
Query: 727 LSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLL 786
GD+ + + LSGGQ+QR+ IARA+ + L D+P SA+D +++ + ++
Sbjct: 137 EELGDR--LKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDP-VATNVIENLIQ 193
Query: 787 GLLRSKTVIYVTHQV-EFLPAADLILVMKDGKITQAGKYNDI 827
L ++ T+I VTH + + +D + + G+I + +I
Sbjct: 194 ELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235
|
Length = 251 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 1e-11
Identities = 60/233 (25%), Positives = 100/233 (42%), Gaps = 51/233 (21%)
Query: 633 PTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAY-------- 684
L ++L V G V + G G+GK++LL I G + +GT+ + G
Sbjct: 17 TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAAS 76
Query: 685 --VAQSPW-------------IQSGNIEDNILFGK--PMDREKYDRVLEACSLKKDLEIL 727
VA P ++ G F DR +R +E +
Sbjct: 77 RRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMER------TGVA 130
Query: 728 SFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLG 787
F D+ V +LSGG++QR+ +ARAL Q + L D+P +++D + H + L
Sbjct: 131 QFADRPVT-----SLSGGERQRVLLARALAQATPVLLLDEPTASLDIN---HQVRT--LE 180
Query: 788 LLRS-----KTVIYVTHQVEFLPAA---DLILVMKDGKITQAGKYNDILNSGT 832
L+R KT + H ++ AA D ++++ DG++ AG D+L + T
Sbjct: 181 LVRRLVDDGKTAVAAIHDLDL--AARYCDELVLLADGRVRAAGPPADVLTADT 231
|
Length = 402 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 1e-11
Identities = 48/201 (23%), Positives = 105/201 (52%), Gaps = 21/201 (10%)
Query: 1072 LRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVE-----PTAGEIVIDGINI--SSIG 1124
++ + C P G T ++G +G GKST++++L R+ + G ++ DG ++ +
Sbjct: 29 VKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88
Query: 1125 LHDLRSRLSIIPQDPTMFEGTVRNNLD---PLEEYK---DEEIWEALDKCQLGDEVRNKE 1178
++R R+ ++ Q P F ++ N+ + Y DE + +L K + DE ++K
Sbjct: 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDK- 147
Query: 1179 GKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF 1238
+ E+G + S GQ+Q +C+ R + + +V+++DE +++D + I++T+ +
Sbjct: 148 ------LNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELK 201
Query: 1239 SDCTVITIAHRITSVID-SDM 1258
+ T++ + H + + SDM
Sbjct: 202 KNFTIVIVTHNMQQAVRVSDM 222
|
Length = 269 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.7 bits (162), Expect = 1e-11
Identities = 69/233 (29%), Positives = 108/233 (46%), Gaps = 28/233 (12%)
Query: 1064 YAPHLPLVLRGL---TCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINI 1120
Y P+ P R L G T ++G TGSGKSTL+Q L +++PT G++ + I +
Sbjct: 11 YQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVV 70
Query: 1121 SSIG----LHDLRSRLSIIPQDP--TMFEGTV-------RNNLDPLEEYKDEEIWEALDK 1167
SS + +R ++ ++ Q P +FE TV N +E ++ E L+
Sbjct: 71 SSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEM 130
Query: 1168 CQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVD-TAT 1226
L DE K + S GQ + V + +L + +VLVLDE TA +D A
Sbjct: 131 VGLADEFWEK----------SPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKAR 180
Query: 1227 DNLIQQTLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLE 1278
++Q H S TV+ + H + V D +D V LL G I +P+ + +
Sbjct: 181 IEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQ 233
|
Length = 288 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 1e-11
Identities = 64/223 (28%), Positives = 100/223 (44%), Gaps = 30/223 (13%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKL------CGTKA----- 683
L D+N+ + G VA+ G GSGKS+LL + G + SGT+ + G K
Sbjct: 23 LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82
Query: 684 ------YVAQSPWIQ--SGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSF-G-DQT 733
V Q P Q +E +I FG PM+ V E + +K E++ G +
Sbjct: 83 LRKKVGIVFQFPEHQLFEETVEKDICFG-PMNFG----VSEEDAKQKAREMIELVGLPEE 137
Query: 734 VIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSK- 792
++ LSGGQ +R+ IA L + ++ + D+P + +D G E+ L + K
Sbjct: 138 LLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPK-GRKEMMEMFYKLHKEKG 196
Query: 793 -TVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDILNSGTD 833
T + VTH +E AD I+VM G + G +I +
Sbjct: 197 LTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFADPDE 239
|
Length = 290 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.5 bits (162), Expect = 1e-11
Identities = 63/215 (29%), Positives = 109/215 (50%), Gaps = 31/215 (14%)
Query: 1085 TGIVGRTGSGKSTLIQTLFRIVE--P---TAGEIVIDGINISSIGLHD--LRSRLSIIPQ 1137
T I+G +G GKST ++ + R+ + P T G ++ DG +I + LR ++ ++ Q
Sbjct: 68 TAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQ 127
Query: 1138 DPTMFEGTVRNNL---DPLEEYKD----EEIWE-ALDKCQLGDEVRNKEGKLDSRVTENG 1189
P F ++ +N+ L D EEI E +L K L DEV + R+ +N
Sbjct: 128 KPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSD-------RLDKNA 180
Query: 1190 ENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVD---TAT-DNLIQQTLRQHFSDCTVIT 1245
S GQ+Q +C+ R L + ++L+LDE T+++D TA ++LIQ+ LR + T++
Sbjct: 181 LGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQE-LRGSY---TIMI 236
Query: 1246 IAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLEN 1279
+ H + SD + G++ E+ +L N
Sbjct: 237 VTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLFTN 271
|
Length = 286 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 65.1 bits (160), Expect = 2e-11
Identities = 56/224 (25%), Positives = 93/224 (41%), Gaps = 43/224 (19%)
Query: 633 PTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK---------- 682
L ++L V G VA+ G G+GK++LL I+G +P SG+++ G
Sbjct: 14 QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERA 73
Query: 683 ----AYVAQSPWIQSG-NIEDNILFG-----KPMDREKYDRVLEACSLKKDLEILSFGDQ 732
YV + I +E+N+L G + + + +RV E K+
Sbjct: 74 RAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERR------- 126
Query: 733 TVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPF-----SAVDAHTGSHLFKEVLLG 787
+ LSGG++Q + IARAL + L D+P V+ +F E +
Sbjct: 127 ---KQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVE-----EIF-EAIRE 177
Query: 788 LLRSK-TVIYVTHQVEF-LPAADLILVMKDGKITQAGKYNDILN 829
L T++ V F L AD V++ G++ G ++L
Sbjct: 178 LRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.4 bits (159), Expect = 2e-11
Identities = 56/193 (29%), Positives = 86/193 (44%), Gaps = 26/193 (13%)
Query: 632 NPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LGEVPKISGTLKLCGTKAY-- 684
L+ I+L A+ G G GKS+ L + L I+G + L G Y
Sbjct: 18 FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAP 77
Query: 685 -------------VAQSPWIQSGNIEDNILFGKPMDREKYDRVLEAC---SLKKDLEILS 728
V Q P +I +N+++G + K VL+ SLK+
Sbjct: 78 NEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDE 137
Query: 729 FGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL 788
D + E ++LSGGQ+QR+ IAR L D+ L D+P SA+D + + + + +LL L
Sbjct: 138 VKDH--LHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQI-ENMLLEL 194
Query: 789 LRSKTVIYVTHQV 801
T+I VTH +
Sbjct: 195 RDQYTIILVTHSM 207
|
Length = 252 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 2e-11
Identities = 62/245 (25%), Positives = 102/245 (41%), Gaps = 52/245 (21%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-------------T 681
L ++L + G +A+ G G+GKS+LL + GE+ SG + L G
Sbjct: 17 LDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARH 76
Query: 682 KAYVAQSPWIQ-SGNIEDNILFG-----KPMDREKYDRVLEACSLKKDLEILSFGDQTVI 735
+A + Q+ + +++ + G + E+ +R+ DL L+
Sbjct: 77 RAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLA------- 129
Query: 736 GERGIN-LSGGQKQRIQIARALYQ------DADIYLFDDPFSAVDAHTGSHLFKEVLLGL 788
R LSGG++QR+Q+AR L Q D+P SA+D H + L L
Sbjct: 130 -GRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIA---H--QHHTLRL 183
Query: 789 LRSKT-----VIYVTHQVEFLPA--ADLILVMKDGKITQAGKYNDILNSGT-----DFMV 836
R V+ V H + L A AD I+++ G++ +G D+L T +
Sbjct: 184 ARQLAREGGAVLAVLHDLN-LAAQYADRIVLLHQGRVIASGSPQDVLTDETLERVYGADI 242
Query: 837 LVGAH 841
VG H
Sbjct: 243 RVGRH 247
|
Length = 259 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 2e-11
Identities = 53/209 (25%), Positives = 90/209 (43%), Gaps = 29/209 (13%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSI-----GL 1125
L+ ++ P G + G++GR G+GKSTL++ L I P +G + + G +SS+ G
Sbjct: 37 ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRG-RVSSLLGLGGGF 95
Query: 1126 H-DLRSRLSIIPQDPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSR 1184
+ +L R + G + + K +EI E +LGD +D
Sbjct: 96 NPELTGR------ENIYLNGRLLGLSRKEIDEKIDEIIEF---SELGD-------FIDLP 139
Query: 1185 VTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDC-TV 1243
V + +S G + + + +L++DE A D A Q+ LR+ TV
Sbjct: 140 V----KTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTV 195
Query: 1244 ITIAHRITSVID-SDMVLLLSHGIIEEYD 1271
I ++H +S+ D L+L G I
Sbjct: 196 ILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 2e-11
Identities = 55/177 (31%), Positives = 82/177 (46%), Gaps = 26/177 (14%)
Query: 1063 RYAPHLPLVLRGLT---CTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGIN 1119
RY P R L + P G I+G TGSGKSTL+Q L +++PT+G + I
Sbjct: 11 RYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERV 70
Query: 1120 ISS----IGLHDLRSRLSIIPQDP--TMFEGTVRN-------NLDPLEEYKDEEIWEALD 1166
I++ L LR ++ I+ Q P +FE TV N EE ++ E ++
Sbjct: 71 ITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIE 130
Query: 1167 KCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVD 1223
L +E+ + + S GQ + V + VL + +VLVLDE TA +D
Sbjct: 131 LVGLPEELLAR----------SPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLD 177
|
Length = 290 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 2e-11
Identities = 52/215 (24%), Positives = 93/215 (43%), Gaps = 22/215 (10%)
Query: 1072 LRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSR 1131
+ G+ G G +G G+GK+T I+ L ++ PT+G + G ++ +R
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRS 67
Query: 1132 LSIIPQDPTMFEG-TVRNNLDPL-------EEYKDEEIWEALDKCQLGDEVRNKEGKLDS 1183
+ I+PQ ++ E T R NL+ + ++ +E E L+ +LG+ D
Sbjct: 68 IGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGE-------AADR 120
Query: 1184 RVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQ-HFSDCT 1242
V +S G R+ + + L+ + VL LDE T +D T I +R T
Sbjct: 121 PV----GTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVT 176
Query: 1243 VITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKL 1276
++ H + D + ++ HG I +P +L
Sbjct: 177 ILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEEL 211
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.7 bits (160), Expect = 2e-11
Identities = 57/240 (23%), Positives = 107/240 (44%), Gaps = 25/240 (10%)
Query: 1056 DILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPT-----A 1110
I + + Y H L+ + + P T I+G +G GKST I+TL +++
Sbjct: 14 QINGMNLWYGQHH--ALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLT 71
Query: 1111 GEIVIDGINI--SSIGLHDLRSRLSIIPQDPTMFEGTVRNN------LDPLEEYKD--EE 1160
GE+ +G NI + L +LR + ++ Q F ++ +N + + K E
Sbjct: 72 GEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEI 131
Query: 1161 IWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATA 1220
+ ++L L DEV++ R+ + S GQ+Q +C+ R L VL++DE T+
Sbjct: 132 VEKSLKDVALWDEVKD-------RLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTS 184
Query: 1221 SVDTATDNLIQQTLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLEN 1279
++D + I++ + + T++ + H + SD G + E + K+ N
Sbjct: 185 ALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFSN 244
|
Length = 259 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 2e-11
Identities = 53/193 (27%), Positives = 94/193 (48%), Gaps = 22/193 (11%)
Query: 1080 PGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDP 1139
G K I G +G GKSTL++ + ++ PT+G ++ +G +IS++ R ++S Q P
Sbjct: 32 AGEFKL-ITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTP 90
Query: 1140 TMFEGTVRNNLD-PLEEYKD----EEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSM 1194
T+F TV +NL P + + L++ L D + L + E S
Sbjct: 91 TLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTI------LTKNIAE----LSG 140
Query: 1195 GQRQLVCLGRVLLKKSKVLVLDEATASVD----TATDNLIQQTLRQHFSDCTVITIAHRI 1250
G++Q + L R L KVL+LDE T+++D + +I + +R+ + V+ + H
Sbjct: 141 GEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQ--NIAVLWVTHDK 198
Query: 1251 TSVIDSDMVLLLS 1263
+ +D V+ L
Sbjct: 199 DEINHADKVITLQ 211
|
Length = 225 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 2e-11
Identities = 64/244 (26%), Positives = 111/244 (45%), Gaps = 23/244 (9%)
Query: 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIV 1114
+++ +L RY L+GL+ + P G KT ++G G+GKSTL+ L I P G +
Sbjct: 5 IEVEDLHFRY-KDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVK 63
Query: 1115 IDGINISSIGLHDLRSRLSIIPQDP--TMFEGTVRN-------NLDPLEEYKDEEIWEAL 1165
+ G +++ +RS++ ++ QDP +F TV + N+ ++ + + EAL
Sbjct: 64 VMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEAL 123
Query: 1166 DKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTA 1225
++ D R+K + S GQ++ V + VL V+VLDE A +D
Sbjct: 124 KAVRMWD-FRDKP----------PYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPR 172
Query: 1226 TDNLIQQTL-RQHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENKSSS 1283
+ + L R H TVI H + + +D V++L G + + L +
Sbjct: 173 GQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLTDEDIVE 232
Query: 1284 FAQL 1287
A L
Sbjct: 233 QAGL 236
|
Length = 274 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 2e-11
Identities = 61/227 (26%), Positives = 109/227 (48%), Gaps = 28/227 (12%)
Query: 1072 LRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIG----LHD 1127
+ + F G IVG+TGSGKSTLIQ + +++PT G + +D I I+ +
Sbjct: 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82
Query: 1128 LRSRLSIIPQDP--TMFEGTV--------RNNLDPLEEYKDEEIWEALDKCQLGDEVRNK 1177
+R R+ ++ Q P +FE TV +N L+E K+ + LG R+
Sbjct: 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLM---DLGFS-RDV 138
Query: 1178 EGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLR-- 1235
++++ S GQ + + + +L ++VLDE TA +D + + + L+
Sbjct: 139 -------MSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSL 191
Query: 1236 QHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENKS 1281
Q + T+I ++H + V +D V+++ G I SP +L ++K
Sbjct: 192 QTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDKK 238
|
Length = 286 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.4 bits (159), Expect = 2e-11
Identities = 68/260 (26%), Positives = 119/260 (45%), Gaps = 42/260 (16%)
Query: 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEI 1113
++++++L RY H VL+G++ G I+G +GSGKST ++ + + +P+ G I
Sbjct: 5 KLNVIDLHKRYGEHE--VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSI 62
Query: 1114 VIDGINISSI-------------GLHDLRSRLSIIPQD------PTMFEGTVRNNLDPLE 1154
V++G I+ + L LR+RL+++ Q T+ E + + L
Sbjct: 63 VVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG 122
Query: 1155 EYKDEEIWEA---LDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSK 1211
K E A L K + + + K + S GQ+Q V + R L + +
Sbjct: 123 LSKQEARERAVKYLAKVGIDERAQGKYPV----------HLSGGQQQRVSIARALAMEPE 172
Query: 1212 VLVLDEATASVDTATDNLIQQTLR--QHFSD--CTVITIAHRITSVID-SDMVLLLSHGI 1266
VL+ DE T+++D L+ + LR Q ++ T++ + H + S V+ L G
Sbjct: 173 VLLFDEPTSALDP---ELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGK 229
Query: 1267 IEEYDSPTKLLENKSSSFAQ 1286
IEE +P +L N S Q
Sbjct: 230 IEEEGAPEQLFGNPQSPRLQ 249
|
Length = 257 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.2 bits (160), Expect = 2e-11
Identities = 65/263 (24%), Positives = 99/263 (37%), Gaps = 85/263 (32%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-------------T 681
L D++L + G VA+ G G+GKS+LL + GE+ SG ++L G
Sbjct: 18 LDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARR 77
Query: 682 KAYVAQS------------------PWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKD 723
+A + Q P ED+ L L
Sbjct: 78 RAVLPQHSSLSFPFTVEEVVAMGRAPH-GLSRAEDDALV---------AAALAQV----- 122
Query: 724 LEILSFGD---QTVIGERGINLSGGQKQRIQIARALYQDADI-----YLF-DDPFSAVD- 773
++ LSGG++QR+Q+AR L Q + +L D+P SA+D
Sbjct: 123 -DLAHLAGRDYPQ--------LSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDL 173
Query: 774 AHTGSHLFKEVLLGLLRSKT------VIYVTHQVEFLPA--ADLILVMKDGKITQAGKYN 825
AH + +L L R VI V H + L A AD I+++ G++ G
Sbjct: 174 AH------QHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQGRLVADGTPA 226
Query: 826 DILNSGT-----DFMVLVGAHQQ 843
++L T VLV H +
Sbjct: 227 EVLTPETLRRVYGADVLVQPHPE 249
|
Length = 258 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.4 bits (159), Expect = 2e-11
Identities = 64/239 (26%), Positives = 107/239 (44%), Gaps = 24/239 (10%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDG--INISSIGLHDL 1128
VL+GL F TG+VG G GKSTL L ++ P G ++ G ++ S GL L
Sbjct: 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLAL 75
Query: 1129 RSRLSIIPQDP------TMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLD 1182
R +++ + QDP T + + +L L + E + L D + +
Sbjct: 76 RQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPI- 134
Query: 1183 SRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCT 1242
+ S GQ++ V + L+ +++ L+LDE TA +D A + +R+ +
Sbjct: 135 -------QCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGN 187
Query: 1243 -VITIAHRITSVID-SDMVLLLSHGIIEEYDSP------TKLLENKSSSFAQLVAEYTQ 1293
VI +H I + + SD V +L G I + +P T+ +E + LV +TQ
Sbjct: 188 HVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFACTEAMEQAGLTQPWLVKLHTQ 246
|
Length = 271 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 68.0 bits (166), Expect = 3e-11
Identities = 96/380 (25%), Positives = 160/380 (42%), Gaps = 56/380 (14%)
Query: 516 LKKFLYTGAMTSFVFWGAPTFVSVATFGACMLLGIPLESGKILS-ALATFRILQEPIYNL 574
L+ F + F+ A TF+++ T E G IL+ A+ LQ + +
Sbjct: 1108 LRWFQMRIDIIFVFFFIAVTFIAIGTNQDG-----EGEVGIILTLAMNILSTLQWAVNSS 1162
Query: 575 PDTISMIIQTKVSLDRIASFLCLDDLQSDVVEKHPRGSSETAIEIVDGNFAWDI------ 628
D ++ S+ R+ F+ L + + T + +++ A
Sbjct: 1163 IDVDGLM----RSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVL-VIENPHAQKCWPSGGQ 1217
Query: 629 -----------SSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCIL------GEVPK 671
+ L+D++ V G RV + G GSGKS+LLS +L GE+ +
Sbjct: 1218 MDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEI-Q 1276
Query: 672 ISG------TLKLCGTKAY--VAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKD 723
I G TL+ KA+ + Q +I SG N+ + E+ +V E LK
Sbjct: 1277 IDGVSWNSVTLQTW-RKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSV 1335
Query: 724 LEILSFGDQT--VIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLF 781
+E F D+ V+ + G LS G KQ + +AR++ A I L D+P + +D T +
Sbjct: 1336 IE--QFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVT-LQII 1392
Query: 782 KEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSGTDFMVLVGAH 841
++ L + TVI H+VE L LV++ + Q +LN + F
Sbjct: 1393 RKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNETSLF------- 1445
Query: 842 QQALSALDSIEGGPVSERIS 861
+QA+SA D ++ P+ R S
Sbjct: 1446 KQAMSAADRLKLFPLHRRNS 1465
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.3 bits (161), Expect = 3e-11
Identities = 65/234 (27%), Positives = 107/234 (45%), Gaps = 26/234 (11%)
Query: 618 EIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LGEVPKI 672
EI + NF W ++ L D+NL + A G G GKS+ L + L E
Sbjct: 82 EIRNFNF-WYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSH 140
Query: 673 SGTLKLCGTK---------------AYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEA 717
G + GT V Q P +I DN+ +G P + DR +
Sbjct: 141 EGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYG-PRNNGINDRKILE 199
Query: 718 CSLKKDLEILSFGDQTV--IGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAH 775
++K L+ + D+ + + G LSGGQ+QR+ IARA+ + ++ L D+P SA+D
Sbjct: 200 KIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPI 259
Query: 776 TGSHLFKEVLLGLLRSKTVIYVTHQV-EFLPAADLILVMKDGKITQAGKYNDIL 828
+ + +E++L L + ++I VTH + + +D + G I +AG+ I
Sbjct: 260 ATAKI-EELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIF 312
|
Length = 329 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 3e-11
Identities = 56/229 (24%), Positives = 96/229 (41%), Gaps = 44/229 (19%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG------TK------ 682
+ D+N + G A+ G GSGKS+L+ I + +GT+ + TK
Sbjct: 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82
Query: 683 -----AYVAQSPWIQ--SGNIEDNILFGKP---MDREK-----YDRVLEACSLKKDLEIL 727
V Q P Q +E I+FG M+ ++ + +++ L
Sbjct: 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMD----------L 132
Query: 728 SFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSH---LFKEV 784
F + V+ + +SGGQ ++I I L + DI + D+P + +D + L K
Sbjct: 133 GF-SRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKS- 190
Query: 785 LLGLLRSKTVIYVTHQV-EFLPAADLILVMKDGKITQAGKYNDILNSGT 832
L +KT+I V+H + E AD ++VMK+G I ++
Sbjct: 191 -LQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDKK 238
|
Length = 286 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 3e-11
Identities = 59/229 (25%), Positives = 98/229 (42%), Gaps = 45/229 (19%)
Query: 636 RDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLK-----------LCGTKA- 683
RD++ ++ G + + G GSGKS+LL C+ G + GT ++A
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79
Query: 684 --YVAQSPWIQSGNIEDNILFG-------------KPMD--REKYDRVLE-ACSLKKDLE 725
+ ++ W G + N G + M Y + A +++E
Sbjct: 80 RRRLMRTEW---GFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLEEVE 136
Query: 726 ILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL 785
I D T I + SGG +QR+QIAR L + D+P +D + L ++L
Sbjct: 137 I----DPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLL-DLL 191
Query: 786 LGLLRSK--TVIYVTHQ---VEFLPAADLILVMKDGKITQAGKYNDILN 829
GL+R VI VTH L A +LVM+ G++ ++G + +L+
Sbjct: 192 RGLVRDLGLAVIIVTHDLGVARLL--AQRLLVMQQGRVVESGLTDQVLD 238
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 3e-11
Identities = 63/214 (29%), Positives = 103/214 (48%), Gaps = 34/214 (15%)
Query: 631 NNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK-------- 682
++ I+L V G + + G G GKS+LL + G SG + + G
Sbjct: 16 KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPAD 75
Query: 683 ---AYVAQS----PWIQSGNIEDNILFG---KPMDREKYD-RVLEACSLKKDLEILSFGD 731
A V Q+ P + ++ +N+ +G + M + + + RV EA + LE+ D
Sbjct: 76 RDIAMVFQNYALYPHM---SVRENMAYGLKIRGMPKAEIEERVAEAA---RILELEPLLD 129
Query: 732 QTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRS 791
+ + LSGGQ+QR+ + RA+ ++ ++LFD+P S +DA + E + L R
Sbjct: 130 R-----KPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLE-IQRLHRR 183
Query: 792 --KTVIYVTH-QVEFLPAADLILVMKDGKITQAG 822
T +YVTH QVE + AD ++VM G Q G
Sbjct: 184 LKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIG 217
|
Length = 356 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 3e-11
Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 12/168 (7%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS 1130
+ GL+ T G + G GSGK+TL++ L + P AG ++++G + R
Sbjct: 15 LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARG 74
Query: 1131 RLSIIPQDPTMFEGTVRNNLDPL-EEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENG 1189
L + +V NL ++ DE++ EAL + L +L
Sbjct: 75 LLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQL-------- 126
Query: 1190 ENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQH 1237
S GQ++ V L R+LL + +LDE T ++D A + + H
Sbjct: 127 ---SAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGH 171
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 3e-11
Identities = 67/272 (24%), Positives = 124/272 (45%), Gaps = 26/272 (9%)
Query: 562 ATFRILQEPIYNLPDTISMIIQTKVSLDRIASFLCLDDLQSDVVEKHPRGSSETAIEIVD 621
L+ P+ + + ++ +V+ ++IA L ++D +T +E+ +
Sbjct: 270 LVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKL-ELAPYKADFPRPQAFPDWKT-LELRN 327
Query: 622 GNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT 681
FA+ N + INL + G V + G GSGKS+L + G SG + L G
Sbjct: 328 VRFAYQ--DNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGK 385
Query: 682 KAYVAQSPWIQSGNIED-NILFGKPM-DREKYDRVL--EACS----LKKDLEILSFGDQT 733
+ + +ED LF D +D++L E + ++K L+ L +T
Sbjct: 386 P--------VSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKT 437
Query: 734 VIGERGI---NLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLR 790
+ + LS GQK+R+ + AL ++ DI + D+ + D F +VLL LL+
Sbjct: 438 SLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAF-RREFYQVLLPLLK 496
Query: 791 S--KTVIYVTHQVEFLPAADLILVMKDGKITQ 820
KT+ ++H + AD +L M++G++++
Sbjct: 497 EQGKTIFAISHDDHYFIHADRLLEMRNGQLSE 528
|
Length = 546 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 3e-11
Identities = 50/212 (23%), Positives = 91/212 (42%), Gaps = 33/212 (15%)
Query: 640 LKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKA--------YVAQS--- 688
L G + + G G+GK++LL ILG +P GT+K+ G YV Q
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEF 60
Query: 689 PWIQSGNIEDNILFGK-----PMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLS 743
W ++ ++ G+ + R + + + D+ +GE LS
Sbjct: 61 AWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRP-VGE----LS 115
Query: 744 GGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRS-----KTVIYVT 798
GGQ+QR+ +ARAL + L D+PF+ +D T +E+L L ++ T
Sbjct: 116 GGQRQRVLVARALATRPSVLLLDEPFTGLDMPT-----QELLTELFIELAGAGTAILMTT 170
Query: 799 HQ-VEFLPAADLILVMKDGKITQAGKYNDILN 829
H + + D ++++ +G++ G + +
Sbjct: 171 HDLAQAMATCDRVVLL-NGRVIADGTPQQLQD 201
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 3e-11
Identities = 66/253 (26%), Positives = 111/253 (43%), Gaps = 43/253 (16%)
Query: 1057 ILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVID 1116
+ +L RY H VL+G++ G I+G +GSGKST ++ + + +P+AG I ++
Sbjct: 9 VEDLHKRYGEHE--VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVN 66
Query: 1117 GINI-------------SSIGLHDLRSRLSIIPQD------PTMFEGTVRNNLDPLEEYK 1157
G I L LR+RL ++ Q T+ E + + L K
Sbjct: 67 GEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSK 126
Query: 1158 DEEIWEA---LDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLV 1214
E I A L K + ++ L S GQ+Q V + R L + +V++
Sbjct: 127 AEAIERAEKYLAKVGIAEKADAYPAHL-----------SGGQQQRVAIARALAMEPEVML 175
Query: 1215 LDEATASVDTATDNLIQQTLR--QHFSD--CTVITIAHRITSVID-SDMVLLLSHGIIEE 1269
DE T+++D L+ + L+ Q ++ T++ + H + D S V+ L G IEE
Sbjct: 176 FDEPTSALDP---ELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEE 232
Query: 1270 YDSPTKLLENKSS 1282
P ++ N S
Sbjct: 233 EGPPEQVFGNPQS 245
|
Length = 256 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.3 bits (156), Expect = 4e-11
Identities = 65/234 (27%), Positives = 104/234 (44%), Gaps = 37/234 (15%)
Query: 628 ISSNNPTLRDINLKVFHGMRV--------AVCGTVGSGKSSLLSCIL---GEVP--KISG 674
IS+ + L N + HG+ + A+ G G GKS+ L C+ ++ KI+G
Sbjct: 5 ISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITG 64
Query: 675 TLKLCGTKAY---------------VAQSPWIQSGNIEDNILFGKPM----DREKYDRVL 715
+K G Y V Q P ++ DN+ +G + D+E D+ +
Sbjct: 65 EIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRV 124
Query: 716 EACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAH 775
E SLK+ D + SGGQ+QRI IARAL + L D+P SA+D
Sbjct: 125 EE-SLKQAAIWKETKDN--LDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPI 181
Query: 776 TGSHLFKEVLLGLLRSKTVIYVTHQVEFLP-AADLILVMKDGKITQAGKYNDIL 828
+ S + +E L+ L T I VTH ++ +D + +G + +AG ++
Sbjct: 182 SSSEI-EETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMF 234
|
Length = 251 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 4e-11
Identities = 43/190 (22%), Positives = 76/190 (40%), Gaps = 43/190 (22%)
Query: 630 SNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKA--YVAQ 687
L+D++ ++ G R+ + G G+GKSSL + G P SG + + + ++ Q
Sbjct: 12 DGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQ 71
Query: 688 SPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQK 747
P++ G + + +++ P D LSGG++
Sbjct: 72 RPYLPLGTLREQLIY--PWDDV--------------------------------LSGGEQ 97
Query: 748 QRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSK--TVIYVTHQVEFLP 805
QR+ AR L D+ SA+D + ++ L LL+ TVI V H+
Sbjct: 98 QRLAFARLLLHKPKFVFLDEATSALDEES-----EDRLYQLLKELGITVISVGHRPSLWK 152
Query: 806 AADLILVMKD 815
D +L +
Sbjct: 153 FHDRVLDLDG 162
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 4e-11
Identities = 54/190 (28%), Positives = 96/190 (50%), Gaps = 24/190 (12%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSL---LSCILGEVP--KISGTLKLCGTKAYVAQSP 689
L++INL + A+ G G GKS+ L+ ++ VP K++G + G+ +
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 690 WI----------QSGN-----IEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTV 734
+ Q GN I DN+ +G + K + L+ +K L+ ++ D+
Sbjct: 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIV-EKSLKDVALWDEVK 146
Query: 735 --IGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSK 792
+ + ++LSGGQ+QR+ IARAL + D+ L D+P SA+D + +E++L L
Sbjct: 147 DRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDP-VSTRKIEELILKLKEKY 205
Query: 793 TVIYVTHQVE 802
T++ VTH ++
Sbjct: 206 TIVIVTHNMQ 215
|
Length = 259 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 4e-11
Identities = 53/156 (33%), Positives = 74/156 (47%), Gaps = 20/156 (12%)
Query: 1082 GMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIG---LHDLRSRLSIIPQD 1138
G +VG +GSGKST + L R+VE GEI+ +G I ++ L LR + I QD
Sbjct: 350 GETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQD 409
Query: 1139 PTMFEGTVRNNLDPLEEYKDEEIWEALDKCQL--GDEVRNKEGKLDSRVTENGEN-W--- 1192
P +LDP + D I E L L G + L RV E+ W
Sbjct: 410 PYA-------SLDPRQTVGD-SIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYP 461
Query: 1193 ---SMGQRQLVCLGRVLLKKSKVLVLDEATASVDTA 1225
S GQRQ +C+ R L KV++ DEA +++D +
Sbjct: 462 HEFSGGQRQRICIARALALNPKVIIADEAVSALDVS 497
|
Length = 623 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 4e-11
Identities = 76/278 (27%), Positives = 114/278 (41%), Gaps = 56/278 (20%)
Query: 612 SSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK 671
S +++ +F N +I+L V G A+ G G GK++LL I G++
Sbjct: 3 SVANLVDMRGVSFT---RGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAP 59
Query: 672 ISGTL--------KLCGTKAYVAQ---SPWIQSG------NIEDNILFGKPMDREKY--- 711
G + + ++ Y + S QSG N+ DN+ + P+ RE
Sbjct: 60 DHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAY--PL-REHTQLP 116
Query: 712 DRVLEACSLKKDLEILSFGDQTVIGERGI------NLSGGQKQRIQIARALYQDADIYLF 765
+L + + K LE +G RG LSGG +R +ARA+ + D+ +F
Sbjct: 117 APLLHSTVMMK-LE--------AVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMF 167
Query: 766 DDPFSAVDAHTGSHLFKEVLLGLLRSK---TVIYVTHQV-EFLPAADLILVMKDGKITQA 821
D+PF D T L K L+ L S T + V+H V E L AD ++ D KI
Sbjct: 168 DEPFVGQDPITMGVLVK--LISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAH 225
Query: 822 GKYNDILNSGTDFMVLVGAHQQALSALDSIEGGPVSER 859
G L + D + LD I GPV R
Sbjct: 226 GSAQA-LQANPD--------PRVRQFLDGIADGPVPFR 254
|
Length = 269 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.0 bits (158), Expect = 4e-11
Identities = 60/190 (31%), Positives = 88/190 (46%), Gaps = 26/190 (13%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LGEVPKISGTL------------- 676
L D++LK+ +A G G GKS+LL C L K+ G L
Sbjct: 36 LVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95
Query: 677 --KLCGTKAYVAQSPWIQSGNIEDNILFGKPMDREK--YDRVLEACSLKKDLEILSFGDQ 732
KL V Q P +I +NI F + K D ++E SL++ D+
Sbjct: 96 SVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVED-SLRRAAIWEEVKDK 154
Query: 733 TVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSK 792
+ E+G LSGGQ+QR+ IARA+ D+ L D+P SA+D + +E+ L L
Sbjct: 155 --LKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDP-ISTRQVEELCLELKEQY 211
Query: 793 TVIYVTHQVE 802
T+I VTH ++
Sbjct: 212 TIIMVTHNMQ 221
|
Length = 274 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 4e-11
Identities = 55/226 (24%), Positives = 98/226 (43%), Gaps = 40/226 (17%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS 1130
+ ++ G G++G G+GK+TL + +P++G ++ G +I+ + H +
Sbjct: 19 AVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPH-RIA 77
Query: 1131 RLSIIP--QDPTMFEG-TVRNN--------------LDPLEEYKDEEI-----WEALDKC 1168
RL I Q +F G TV N L K+E E L+
Sbjct: 78 RLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFV 137
Query: 1169 QLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASV-DTATD 1227
LG+ D N S GQ++ + + R L + K+L+LDE A + T+
Sbjct: 138 GLGE-------LADRPA----GNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETE 186
Query: 1228 NLIQ--QTLRQHFSDCTVITIAHRITSVID-SDMVLLLSHG-IIEE 1269
L + + LR T++ I H + V+ +D +++L++G +I E
Sbjct: 187 ELAELIRELRDRG-GVTILLIEHDMKLVMGLADRIVVLNYGEVIAE 231
|
Length = 250 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 5e-11
Identities = 54/190 (28%), Positives = 90/190 (47%), Gaps = 24/190 (12%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LGEVPKISGTLKLCGTKAY----- 684
L DI+L+ A+ G G GKS+ L C+ L ++ G + L G Y
Sbjct: 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81
Query: 685 ----------VAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTV 734
V Q P +I +N+ +G ++ K D+ A +++ L + D+
Sbjct: 82 VVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVK-DKAYLAERVERSLRHAALWDEVK 140
Query: 735 --IGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSK 792
+ E + LSGGQ+QR+ IARAL + ++ L D+P SA+D + +E++ L
Sbjct: 141 DRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDP-IATQKIEELIHELKARY 199
Query: 793 TVIYVTHQVE 802
T+I VTH ++
Sbjct: 200 TIIIVTHNMQ 209
|
Length = 253 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 5e-11
Identities = 48/186 (25%), Positives = 86/186 (46%), Gaps = 11/186 (5%)
Query: 1072 LRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDG-INISSIGLHDLRS 1130
L L+ + G ++G G+GK+TL+ + P GE++ DG +++ + H +
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHR-IA 79
Query: 1131 RLSIIP--QDPTMFEG-TVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEG-----KLD 1182
R I Q PT+FE TVR NL+ L +D+ ++ +L +E R + L
Sbjct: 80 RAGIGRKFQKPTVFENLTVRENLE-LALNRDKSVFASLFARLRAEERRRIDELLATIGLG 138
Query: 1183 SRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCT 1242
S GQ+Q + +G +L + K+L+LDE A + A + L+ +
Sbjct: 139 DERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHS 198
Query: 1243 VITIAH 1248
++ + H
Sbjct: 199 ILVVEH 204
|
Length = 249 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 5e-11
Identities = 56/197 (28%), Positives = 99/197 (50%), Gaps = 31/197 (15%)
Query: 1072 LRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGEIVIDGINI--SSIG 1124
L + P T +G +G GKST ++ L R+ + G+I +DG +I +
Sbjct: 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94
Query: 1125 LHDLRSRLSIIPQDPTMFEGTVRNN------LDPLEEYKDE--EIWE-ALDKCQLGDEVR 1175
+ +LR+R+ ++ Q P F ++ N + L K E EI E +L K L +EV+
Sbjct: 95 VVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK 154
Query: 1176 NKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVD---TA-TDNLIQ 1231
+ R+ E G S GQ+Q +C+ R + +V+++DE +++D TA + LI
Sbjct: 155 D-------RLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELID 207
Query: 1232 QTLRQHFSDCTVITIAH 1248
+ LRQ++ T++ + H
Sbjct: 208 E-LRQNY---TIVIVTH 220
|
Length = 267 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 5e-11
Identities = 73/258 (28%), Positives = 118/258 (45%), Gaps = 50/258 (19%)
Query: 637 DINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG----TKAYVAQS---- 688
++ V G + G G+GK++ L +LG +G++ LCG ++A A+
Sbjct: 25 GLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGV 84
Query: 689 -PWIQSGNIE------DNIL-----FGKPMD--REKYDRVLEACSLKKDLEILSFGDQTV 734
P Q N++ +N+L FG R +LE L+ + D V
Sbjct: 85 VP--QFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLE------NKADAKV 136
Query: 735 IGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-RSKT 793
GE LSGG K+R+ +ARAL D D+ + D+P + +D HL E L LL R KT
Sbjct: 137 -GE----LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQ-ARHLMWERLRSLLARGKT 190
Query: 794 VIYVTHQVEFLPAA----DLILVMKDGKITQAGKYNDILNS--GTDFMVLVGAHQQALSA 847
++ TH F+ A D + V+++G+ G + ++ S G D + + G AL
Sbjct: 191 ILLTTH---FMEEAERLCDRLCVIEEGRKIAEGAPHALIESEIGCDVIEIYGPDPVALRD 247
Query: 848 LDSIEGGPVSERISMNKE 865
E P++ER ++ E
Sbjct: 248 ----ELAPLAERTEISGE 261
|
Length = 306 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 6e-11
Identities = 54/207 (26%), Positives = 94/207 (45%), Gaps = 30/207 (14%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKA----------- 683
L ++L + GM + G G+GK++L+ + P SGT+++ G
Sbjct: 16 LDGVSLTLGPGM-YGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRI 74
Query: 684 -YVAQSP-WIQSGNIED-----NILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIG 736
Y+ Q + + + L G P +E RV E LE+++ GD
Sbjct: 75 GYLPQEFGVYPNFTVREFLDYIAWLKGIP-SKEVKARVDEV------LELVNLGD--RAK 125
Query: 737 ERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIY 796
++ +LSGG ++R+ IA+AL D I + D+P + +D F+ +L L + VI
Sbjct: 126 KKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEE-RIRFRNLLSELGEDRIVIL 184
Query: 797 VTHQVEFLPA-ADLILVMKDGKITQAG 822
TH VE + + + + V+ GK+ G
Sbjct: 185 STHIVEDVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.9 bits (155), Expect = 6e-11
Identities = 54/189 (28%), Positives = 93/189 (49%), Gaps = 25/189 (13%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSC---ILGEVPKISGTLKLCGTK--------- 682
L DIN+++ A+ G G GKS+ L C + ++ KI G +++ G
Sbjct: 18 LFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVAL 77
Query: 683 ----AYVAQSPWIQSGNIEDNI-----LFGKPMDREKYDRVLEACSLKKDLEILSFGDQT 733
V Q P + +I +NI L G ++++ + ++ C L+K D+
Sbjct: 78 RKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDC-LQKVGLFEEVKDK- 135
Query: 734 VIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKT 793
+ + + LSGGQ+QR+ IARAL + L D+P SA+D S + +E+L L + +
Sbjct: 136 -LKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDP-ISSGVIEELLKELSHNLS 193
Query: 794 VIYVTHQVE 802
+I VTH ++
Sbjct: 194 MIMVTHNMQ 202
|
Length = 246 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 6e-11
Identities = 64/240 (26%), Positives = 115/240 (47%), Gaps = 30/240 (12%)
Query: 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIV 1114
+ I N+ Y + VL ++ P G T I+G G+GKSTL+ + R+++ +GEI
Sbjct: 2 ITIENVSKSYGTKV--VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEIT 59
Query: 1115 IDGINISSIGLHDLRSRLSIIPQD-PTMFEGTVRNNLD----------PLEEYKDEE-IW 1162
IDG+ ++S +L +LSI+ Q+ TVR+ + +E D I
Sbjct: 60 IDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKE--DRRIIN 117
Query: 1163 EALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASV 1222
EA++ L D + ++ LD S GQRQ + VL + + ++LDE ++
Sbjct: 118 EAIEYLHLED-LSDR--YLDE--------LSGGQRQRAFIAMVLAQDTDYVLLDEPLNNL 166
Query: 1223 DTATDNLIQQTLRQHFSDC--TVITIAHRIT-SVIDSDMVLLLSHGIIEEYDSPTKLLEN 1279
D I + LR+ + T++ + H I + SD ++ L +G + + SP ++++
Sbjct: 167 DMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP 226
|
Length = 252 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 6e-11
Identities = 57/220 (25%), Positives = 95/220 (43%), Gaps = 36/220 (16%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG---TK--------- 682
+ ++L V G V + G G+GK++ I+G V SG + L G TK
Sbjct: 16 VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARL 75
Query: 683 --AYVAQSPWIQSG-NIEDNIL-----FGKPMD--REKYDRVLEACSLKKDLEILSFGDQ 732
Y+ Q I +E+NIL G EK + +LE + I
Sbjct: 76 GIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLE------EFHITHLRKS 129
Query: 733 TVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSK 792
+ +LSGG+++R++IARAL + L D+PF+ VD + ++++ L
Sbjct: 130 -----KASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDI-QKIIKILKDRG 183
Query: 793 TVIYVT-HQV-EFLPAADLILVMKDGKITQAGKYNDILNS 830
+ +T H V E L D ++ +GK+ G +I +
Sbjct: 184 IGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAAN 223
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 63.6 bits (156), Expect = 7e-11
Identities = 51/234 (21%), Positives = 91/234 (38%), Gaps = 54/234 (23%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----KAY----- 684
L D++ V G + G G+GK++L + I G + SG++ G +
Sbjct: 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARL 75
Query: 685 ----------------------VAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKK 722
VA SG + + RE+ + +LE L
Sbjct: 76 GIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLAD 135
Query: 723 DLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFK 782
+ LS GQ++R++IARAL D + L D+P + + +
Sbjct: 136 LAD-----------RPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGL-----NPEET 179
Query: 783 EVLLGLLRS-----KTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDILNS 830
E L L+R TV+ V H ++ + + AD + V+ G++ G +++ N+
Sbjct: 180 EELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNN 233
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 7e-11
Identities = 58/185 (31%), Positives = 85/185 (45%), Gaps = 14/185 (7%)
Query: 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIV 1114
+D N++ RY L V+ GL+ G G++G G+GK+T ++ L + P AG I
Sbjct: 8 IDFRNVEKRYGDKL--VVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSIS 65
Query: 1115 IDGINISSIGLHDLRSRLSIIPQ----DPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQL 1170
+ G + S H R R+ ++PQ DP TVR NL Y A
Sbjct: 66 LCGEPVPSRARH-ARQRVGVVPQFDNLDPDF---TVRENLLVFGRYFGLSAAAARALVPP 121
Query: 1171 GDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLI 1230
E E K D++V E S G ++ + L R L+ VLVLDE T +D +L+
Sbjct: 122 LLEFAKLENKADAKVGE----LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLM 177
Query: 1231 QQTLR 1235
+ LR
Sbjct: 178 WERLR 182
|
Length = 306 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 7e-11
Identities = 51/187 (27%), Positives = 80/187 (42%), Gaps = 27/187 (14%)
Query: 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEI 1113
EV L+ V +L+G+ G IVG +GSGKSTL+ L + +P++GE+
Sbjct: 8 EVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEV 67
Query: 1114 VIDGINISSI---GLHDLRSR-LSIIPQD----PTMFEGTVRNNLDPLE---EYKDEEIW 1162
+ G + + LR+R + + Q P + + N PLE E +
Sbjct: 68 RLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNL--TALENVALPLELRGESSADSRA 125
Query: 1163 EA---LDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEAT 1219
A L+ LG + + +L S G++Q V L R + VL DE T
Sbjct: 126 GAKALLEAVGLGKRLTHYPAQL-----------SGGEQQRVALARAFAGRPDVLFADEPT 174
Query: 1220 ASVDTAT 1226
++D AT
Sbjct: 175 GNLDRAT 181
|
Length = 228 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 66.1 bits (161), Expect = 1e-10
Identities = 56/226 (24%), Positives = 106/226 (46%), Gaps = 15/226 (6%)
Query: 1064 YAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSI 1123
++ ++ VL+ ++ G + G TGSGKS+L+ + +EP+ G+I G
Sbjct: 434 FSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG------ 487
Query: 1124 GLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDS 1183
R+S PQ + GT+++N+ Y + + CQL +++ K +
Sbjct: 488 -------RISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKT 540
Query: 1184 RVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLI-QQTLRQHFSDCT 1242
+ E G S GQR + L R + K + + +LD +D T+ I + L + S+ T
Sbjct: 541 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKT 600
Query: 1243 VITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLV 1288
I + ++ + +D +LLL G+ Y + ++ L+ K F+ L+
Sbjct: 601 RILVTSKLEHLKKADKILLLHEGVCYFYGTFSE-LQAKRPDFSSLL 645
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 1e-10
Identities = 64/245 (26%), Positives = 108/245 (44%), Gaps = 40/245 (16%)
Query: 612 SSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSS---LLSCILGE 668
+ +E +F + S P L DI+ + G A+ G GSGKS+ L++ +L
Sbjct: 1 MKDNIVEFKHVSFTYP-DSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLP 59
Query: 669 VPKISGTLKLCGTK-------------AYVAQSPWIQ--SGNIEDNILFG---KPMDREK 710
+ + + G V Q+P Q + D++ FG + + R +
Sbjct: 60 DDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPE 119
Query: 711 YDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFS 770
+++ + D+ +L + D NLSGGQKQR+ IA L + I + D+ S
Sbjct: 120 MIKIVR--DVLADVGMLDYIDS-----EPANLSGGQKQRVAIAGILAVEPKIIILDESTS 172
Query: 771 AVDAHTGSHLFKEVLLGLLR------SKTVIYVTHQVEFLPAADLILVMKDGKITQAGKY 824
+D KE +L L+R + TVI +TH ++ AD +LV+ DGK+ G
Sbjct: 173 MLDPAG-----KEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSP 227
Query: 825 NDILN 829
+I +
Sbjct: 228 VEIFS 232
|
Length = 282 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 1e-10
Identities = 64/231 (27%), Positives = 107/231 (46%), Gaps = 34/231 (14%)
Query: 614 ETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKIS 673
+ IE+ D +F + L+ ++L + G + A+ G G+GKS+LL + G
Sbjct: 2 DNIIEVEDLHFRY--KDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQR 59
Query: 674 GTLKLCGTKAYVAQSPWIQ---------------SGNIEDNILFGKPMD-----REKYDR 713
G +K+ G + W++ S + D++ FG P++ E R
Sbjct: 60 GRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFG-PVNMGLDKDEVERR 118
Query: 714 VLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVD 773
V EA K + + F D+ +LS GQK+R+ IA L D D+ + D+P + +D
Sbjct: 119 VEEAL---KAVRMWDFRDKP-----PYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLD 170
Query: 774 AHTGSHLFKEVLLGL-LRSKTVIYVTHQVEF-LPAADLILVMKDGKITQAG 822
G E+L L + KTVI TH V+ AD ++V+K+G++ G
Sbjct: 171 P-RGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEG 220
|
Length = 274 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.1 bits (153), Expect = 1e-10
Identities = 59/230 (25%), Positives = 104/230 (45%), Gaps = 42/230 (18%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCI-LGEVPKISGTLKLCGTKAYVAQSPWIQS 693
L+ ++L+ G +++ G+ GSGKS+ L CI E P G++ + G + + Q
Sbjct: 21 LKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS-EGSIVVNGQTINLVRDKDGQL 79
Query: 694 GNIEDNILFGKPMDREKYDRVLEACSLKKDLEILS-----------------------FG 730
+ N L + R + V + +L + +L +
Sbjct: 80 KVADKNQL---RLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYL 136
Query: 731 DQTVIGERG-----INLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL 785
+ I ER ++LSGGQ+QR+ IARAL + ++ LFD+P SA+D L EVL
Sbjct: 137 AKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALD----PELVGEVL 192
Query: 786 LGLLR----SKTVIYVTHQVEFLP-AADLILVMKDGKITQAGKYNDILNS 830
+ + KT++ VTH++ F + ++ + GKI + G + +
Sbjct: 193 RIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGN 242
|
Length = 257 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 1e-10
Identities = 61/231 (26%), Positives = 99/231 (42%), Gaps = 39/231 (16%)
Query: 623 NFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-- 680
+ + S + L +IN R+AV G G+GKS+L G + SG++ + G
Sbjct: 8 DLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEP 67
Query: 681 -TKA----------YVAQSP--WIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEIL 727
TK V Q+P I S +E +I FG +L D E +
Sbjct: 68 ITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFG-------------PINLGLDEETV 114
Query: 728 SFGDQTVIGERGI---------NLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGS 778
+ + + G+ +LSGG+K+R+ IA + + + + D+P + +D
Sbjct: 115 AHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVK 174
Query: 779 HLFKEV-LLGLLRSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDI 827
L + L TVI+ THQ++ +P AD I VM G+I G +I
Sbjct: 175 ELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEI 225
|
Length = 277 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.0 bits (153), Expect = 1e-10
Identities = 58/218 (26%), Positives = 109/218 (50%), Gaps = 15/218 (6%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS 1130
V+ ++ T G G++G G+GK+T + IV AG I+ID +IS + LH R+
Sbjct: 18 VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHA-RA 76
Query: 1131 RLSI--IPQDPTMFEG-TVRNNLDPLEEYKDEEIWEALDKCQLGDEVRN--KEGKLDSRV 1185
R I +PQ+ ++F +V +NL + + +D+ L Q D +E ++
Sbjct: 77 RRGIGYLPQEASIFRRLSVYDNLMAVLQIRDD-----LSAEQREDRANELMEEFHIEHLR 131
Query: 1186 TENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSD--CTV 1243
G++ S G+R+ V + R L K ++LDE A VD + I++ + +H D V
Sbjct: 132 DSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRII-EHLRDSGLGV 190
Query: 1244 ITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENK 1280
+ H + + + ++S G + + +PT++L+++
Sbjct: 191 LITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDE 228
|
Length = 241 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.5 bits (154), Expect = 1e-10
Identities = 63/230 (27%), Positives = 106/230 (46%), Gaps = 49/230 (21%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSC-------------------------ILG-E 668
L++IN+ V A+ G G GKS+ L C IL E
Sbjct: 32 LKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE 91
Query: 669 VPKISGTLKLCGTKAYVAQSPWIQSGNIEDNILFG--------KPMDREKYDRVLEACSL 720
V I +++ + V Q P +I +N+ +G + + E+ + L +L
Sbjct: 92 VDPIEVRMRI----SMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAAL 147
Query: 721 KKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHL 780
+++ D+ +G+ NLSGGQ+QR+ IARAL D +I LFD+P SA+D + +
Sbjct: 148 WDEVK-----DR--LGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASI 200
Query: 781 FKEVLLGLLRSK-TVIYVTHQVEFLP-AADLILVMKDGKITQAGKYNDIL 828
E L+ L++K T++ VTH ++ +D M G++ + G + I
Sbjct: 201 --EELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTIF 248
|
Length = 265 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.6 bits (154), Expect = 1e-10
Identities = 52/216 (24%), Positives = 111/216 (51%), Gaps = 20/216 (9%)
Query: 1072 LRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSR 1131
L G++ + G I+G+ GSGKST + + + E G++ IDG +++ + +LR +
Sbjct: 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRK 82
Query: 1132 LSIIPQDP-TMFEG-TVRNNLDPLEEYKD---EEIWEALDKCQLGDEVRNKEGKLDSRVT 1186
+ ++ Q+P F G TV +++ E + EE+ + +D+ L + + + + +R+
Sbjct: 83 IGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARL- 141
Query: 1187 ENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQ-----HFSDC 1241
S GQ+Q V + ++ + ++++LDE+T+ +D I + + +
Sbjct: 142 ------SGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQL--- 192
Query: 1242 TVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLL 1277
TV++I H + SD +L++ G I + +P++L
Sbjct: 193 TVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELF 228
|
Length = 277 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 1e-10
Identities = 61/270 (22%), Positives = 117/270 (43%), Gaps = 47/270 (17%)
Query: 586 VSLDRIASFLCLDDLQSDVV---EKHPRGSSETAIEIVDGNFAWDISSNNPTLRDINLKV 642
VS D I + +LQ+ E + ET E+ + S + +RDI+ V
Sbjct: 232 VSNDDIVRLMVGRELQNRFNAMKENVSNLAHETVFEVRN-----VTSRDRKKVRDISFSV 286
Query: 643 FHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK--------------AYVAQS 688
G + G VGSG++ L++C+ G + G ++L G AY+ +S
Sbjct: 287 CRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITES 346
Query: 689 P----WIQSGNIEDNILFGKPMDREKY-------DRVLEACSLKKDLEILSFGDQTVIGE 737
+ + +I N+ + + Y V E + + E+L+ +V
Sbjct: 347 RRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSV--N 404
Query: 738 RGIN-LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRS----- 791
+ I LSGG +Q++ I++ L ++ +FD+P +D + ++K ++R
Sbjct: 405 QNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYK-----VMRQLADDG 459
Query: 792 KTVIYVTHQV-EFLPAADLILVMKDGKITQ 820
K ++ V+ ++ E + D I V +G++TQ
Sbjct: 460 KVILMVSSELPEIITVCDRIAVFCEGRLTQ 489
|
Length = 510 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 63.5 bits (154), Expect = 2e-10
Identities = 55/258 (21%), Positives = 111/258 (43%), Gaps = 32/258 (12%)
Query: 1053 GEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEP--TA 1110
G + I +L+V Y VL L+ G ++G++G GK+TL++ + V+
Sbjct: 4 GGIRIDHLRVAY--GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLT 61
Query: 1111 GEIVIDGINISSIGLHDLRSRLSIIPQDPTMF-----EGTVRNNLDPLEEYK---DEEIW 1162
G I I +++ H + L+++ Q+ +F E V L + K E +
Sbjct: 62 GRIAIADRDLTHAPPH--KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVA 119
Query: 1163 EALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASV 1222
+AL LGD + +L S G +Q + + R + + VL+LDE +++
Sbjct: 120 DALKLVGLGDAAAHLPAQL-----------SGGMQQRIAIARAIAIEPDVLLLDEPLSAL 168
Query: 1223 DTAT-DNLIQQTLRQH--FSDCTVITIAH-RITSVIDSDMVLLLSHGIIEEYDSPTKLLE 1278
D N+ ++ H + T++ + H + ++ +D ++ G + + P L +
Sbjct: 169 DANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYD 228
Query: 1279 NKSSSFAQLVAEYTQRSS 1296
+ F AE+ ++
Sbjct: 229 APADGF---AAEFLGAAN 243
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 2e-10
Identities = 62/233 (26%), Positives = 113/233 (48%), Gaps = 27/233 (11%)
Query: 1070 LVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLR 1129
+ L G++ G ++G +G GK+TL++ + PT+GEI++DG +I+++ H +
Sbjct: 14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPH--K 71
Query: 1130 SRLSIIPQDPTMFEG-TVRNNLD-PLEEYK------DEEIWEALDKCQLGDEVRNKEGKL 1181
++ + Q+ +F TV N+ L K E + EALD QL K +L
Sbjct: 72 RPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQL 131
Query: 1182 DSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLR--QHFS 1239
S GQ+Q V + R L+ + KVL+LDE ++D +Q L+ Q
Sbjct: 132 -----------SGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKEL 180
Query: 1240 DCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLVAEY 1291
T + + H + SD + +++ G I++ +P ++ E ++ F VA++
Sbjct: 181 GITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEPANRF---VADF 230
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 2e-10
Identities = 58/240 (24%), Positives = 95/240 (39%), Gaps = 69/240 (28%)
Query: 631 NNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK-------- 682
L D++L + G A+ G G GKS+LL C + SGT+ L
Sbjct: 14 TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQ 73
Query: 683 -----AYVAQ------------------SPWIQSGNIEDNILFGK--PMDREKYDRVLEA 717
A + Q SPW+ L+G+ D + ++ +E
Sbjct: 74 LARRLALLPQHHLTPEGITVRELVAYGRSPWLS--------LWGRLSAEDNARVNQAME- 124
Query: 718 CSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTG 777
I D+ + +LSGGQ+QR +A L QD + L D+P + +D
Sbjct: 125 -----QTRINHLADRRLT-----DLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDI--- 171
Query: 778 SHLFKEVLLGLLR-----SKTVIYVTHQVEFLPAA----DLILVMKDGKITQAGKYNDIL 828
+H + L+ L+R KTV+ V H L A D ++V+ +G + G +++
Sbjct: 172 NHQVE--LMRLMRELNTQGKTVVTVLHD---LNQASRYCDHLVVLANGHVMAQGTPEEVM 226
|
Length = 255 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.3 bits (156), Expect = 2e-10
Identities = 82/362 (22%), Positives = 145/362 (40%), Gaps = 74/362 (20%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------------ 682
++D +L + G + G GSGKS+++ + + G + + G
Sbjct: 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREV 103
Query: 683 -----AYVAQS-PWIQSGNIEDNILFGKPMD----REKYDRVLEACSLKKDLEILSFGDQ 732
A V QS + + DN FG + E+ ++ L+A + LE +
Sbjct: 104 RRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALR-QVGLENYAHSYP 162
Query: 733 TVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL-LGLLRS 791
LSGG +QR+ +ARAL + DI L D+ FSA+D + + E++ L
Sbjct: 163 D-------ELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQ 215
Query: 792 KTVIYVTHQV-EFLPAADLILVMKDGKITQAGKYNDILNS-----------GTDFMVLVG 839
+T+++++H + E + D I +M++G++ Q G ++ILN+ G D +
Sbjct: 216 RTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVRTFFRGVDISQVFS 275
Query: 840 AHQQALSALDSI---------------------EGGPVSERISMNKENGGMDTTNGVTMK 878
A A + + E G V ER NK G + + T
Sbjct: 276 AKDIARRTPNGLIRKTPGFGPRSALKLLQDEDREYGYVIER--GNKFVGAVSIDSLKTAL 333
Query: 879 EGNEDIQTDKVDEQYYIPSARELSRLV-----GVCKAPVI---QHFSETISGSTTIRSFD 930
+ + +D + + LS L+ C PV+ Q + IS +R+ D
Sbjct: 334 TQQQGLDAALIDAPLAVDAQTPLSELLSHVGQAPCAVPVVDEDQQYVGIISKGMLLRALD 393
Query: 931 QE 932
+E
Sbjct: 394 RE 395
|
Length = 400 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 2e-10
Identities = 54/206 (26%), Positives = 88/206 (42%), Gaps = 25/206 (12%)
Query: 633 PTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK---------- 682
L+ + L V G VA+ G GSGKS+LL+ + G SG ++L G
Sbjct: 24 SILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARA 83
Query: 683 -------AYVAQS-PWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTV 734
+V QS I + +N+ + E K LE + G +
Sbjct: 84 ALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGA--KALLEAVGLGKR-- 139
Query: 735 IGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSK-- 792
+ LSGG++QR+ +ARA D+ D+P +D TG + ++L L R +
Sbjct: 140 LTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKI-ADLLFALNRERGT 198
Query: 793 TVIYVTHQVEFLPAADLILVMKDGKI 818
T++ VTH + D L ++ G++
Sbjct: 199 TLVLVTHDPQLAARCDRQLRLRSGRL 224
|
Length = 228 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 2e-10
Identities = 57/215 (26%), Positives = 94/215 (43%), Gaps = 39/215 (18%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAY-----VAQSP 689
L+DI+ +++ G RV + G G+GKS+LL I G SG +K+ G A P
Sbjct: 43 LKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDP 102
Query: 690 WIQSGNIEDNILF--------GKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGIN 741
+G +NI K +D EK D ++E E+ F DQ V
Sbjct: 103 -ELTG--RENIYLRGLILGLTRKEID-EKVDEIIEFA------ELGDFIDQPV-----KT 147
Query: 742 LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLR-----SKTVIY 796
S G R+ + A + + DI L D+ + DA F+E L L +KT++
Sbjct: 148 YSSGMYARLAFSVATHVEPDILLLDEVLAVGDAA-----FQEKCLERLNELVEKNKTIVL 202
Query: 797 VTHQVEFLP-AADLILVMKDGKITQAGKYNDILNS 830
V+H + + D + ++ G+I G +++ +
Sbjct: 203 VSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPA 237
|
Length = 249 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 2e-10
Identities = 55/169 (32%), Positives = 87/169 (51%), Gaps = 12/169 (7%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS 1130
V+ GL+ T G G++G G+GKST+ + + + P AG+I + G+ + + R+
Sbjct: 56 VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARA 114
Query: 1131 RLSIIPQ-DPTMFEGTVRNNLDPLEEY---KDEEIWEALDKCQLGDEVRNKEGKLDSRVT 1186
R+ ++PQ D E TVR NL Y EI EA+ L E E K D+RV+
Sbjct: 115 RIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREI-EAVIPSLL--EFARLESKADARVS 171
Query: 1187 ENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLR 1235
+ S G ++ + L R L+ ++L+LDE T +D +LI + LR
Sbjct: 172 D----LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLR 216
|
Length = 340 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 3e-10
Identities = 48/202 (23%), Positives = 91/202 (45%), Gaps = 34/202 (16%)
Query: 1082 GMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDPTM 1141
G I+G +G+GKSTL+ + +EP +G I ++ + + GL + +S++ Q+ +
Sbjct: 24 GEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHT--GLAPYQRPVSMLFQENNL 81
Query: 1142 FEG-TVRNN----------LDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGE 1190
F TVR N L+ ++ K + Q+G + + E
Sbjct: 82 FAHLTVRQNIGLGLHPGLKLNAEQQEKVVDA-----AQQVG---------IADYLDRLPE 127
Query: 1191 NWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDN----LIQQTLRQHFSDCTVITI 1246
S GQRQ V L R L++ + +L+LDE +++D L++Q + T++ +
Sbjct: 128 QLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSER--QRTLLMV 185
Query: 1247 AHRITSVIDS-DMVLLLSHGII 1267
H ++ + ++S G I
Sbjct: 186 THHLSDARAIASQIAVVSQGKI 207
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 3e-10
Identities = 52/194 (26%), Positives = 90/194 (46%), Gaps = 26/194 (13%)
Query: 631 NNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LGEVPKISGTLKLCGTKAY- 684
+ ++++ L + A G G GKS++L C L ++ G + G Y
Sbjct: 22 SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYA 81
Query: 685 --------------VAQSPWIQSGNIEDNILFGKPMDREK--YDRVLEACSLKKDLEILS 728
V Q P +I DNI +G ++ K D ++E SL++
Sbjct: 82 PDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVER-SLRQAALWDE 140
Query: 729 FGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL 788
D+ + + G++LSGGQ+QR+ IARA+ ++ L D+P SA+D + +E++ L
Sbjct: 141 VKDK--LKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDP-ISTLRIEELMHEL 197
Query: 789 LRSKTVIYVTHQVE 802
T+I VTH ++
Sbjct: 198 KEQYTIIIVTHNMQ 211
|
Length = 264 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 3e-10
Identities = 54/191 (28%), Positives = 88/191 (46%), Gaps = 31/191 (16%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LGEVPKISGTLKLCGTKAY----- 684
L D++L + A G G GKS+ L C+ + +++G + L G Y
Sbjct: 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94
Query: 685 ----------VAQSPWIQSGNIEDNILFGKPM-----DREKYDRVLEACSLKKDLEILSF 729
V Q P +I +N+ +G + + + D ++E SL+K
Sbjct: 95 VVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVET-SLRKAGLWEEV 153
Query: 730 GDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL 789
D+ + E G LSGGQ+QR+ IARA+ ++ L D+P SA+D + + E L+ L
Sbjct: 154 KDR--LHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKV--EELIDEL 209
Query: 790 RSK-TVIYVTH 799
R T++ VTH
Sbjct: 210 RQNYTIVIVTH 220
|
Length = 267 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 3e-10
Identities = 52/211 (24%), Positives = 100/211 (47%), Gaps = 23/211 (10%)
Query: 1069 PLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIG-LHD 1127
L L + G I+GR GSGKST+ + + ++ P+ G++ +DG++ S L D
Sbjct: 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWD 82
Query: 1128 LRSRLSIIPQDP------TMFEGTVR---NNLDPLEEYKDEEIWEALDKCQLGDEVRNKE 1178
+R++ ++ Q+P T+ E V NL E E + E+L K + + R+
Sbjct: 83 IRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP 142
Query: 1179 GKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQ-- 1236
L S GQ+Q V + +L + + ++ DE TA +D + + T+++
Sbjct: 143 HLL-----------SGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELN 191
Query: 1237 HFSDCTVITIAHRITSVIDSDMVLLLSHGII 1267
T+I I H + +++D ++++ G +
Sbjct: 192 KKYGITIILITHYMEEAVEADRIIVMDSGKV 222
|
Length = 280 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.3 bits (151), Expect = 3e-10
Identities = 41/156 (26%), Positives = 73/156 (46%), Gaps = 5/156 (3%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS 1130
V LT P G T I+G G GKSTL++TL R++ P G + +DG +I ++
Sbjct: 22 VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVAR 81
Query: 1131 RLSIIPQDPTMFEGTVRNNLDPLEEYKDEEI---WEALDKCQLGDEVRNKEGKLDSRVTE 1187
R+ ++ Q+ T L Y + + W D+ + ++ + +
Sbjct: 82 RIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQAT--GITHLADQ 139
Query: 1188 NGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVD 1223
+ + S GQRQ + VL +++ +++LDE T +D
Sbjct: 140 SVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175
|
Length = 265 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 3e-10
Identities = 70/268 (26%), Positives = 117/268 (43%), Gaps = 58/268 (21%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTL--FRIVEPTAGEIV-------------- 1114
VL+ ++ T G GI+GR+G+GKS L+ L EPT+G I+
Sbjct: 15 VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVER 74
Query: 1115 -------------------IDGINISSIGLHDLRSRLSIIPQDPTMFEGTVR---NNLDP 1152
+D N+S +R R++I+ Q G N L+
Sbjct: 75 PSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEA 134
Query: 1153 LEE--YK-DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKK 1209
LEE Y+ E + A+D L + V +L R+T + S G++Q V L R L K+
Sbjct: 135 LEEIGYEGKEAVGRAVD---LIEMV-----QLSHRITHIARDLSGGEKQRVVLARQLAKE 186
Query: 1210 SKVLVLDEATASVDTATDNLIQQTLRQHF--SDCTVITIAHRITSVID--SDMVLLLSHG 1265
+ + DE T ++D T L+ L + S +++ +H VI+ SD + L +G
Sbjct: 187 PFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSH-WPEVIEDLSDKAIWLENG 245
Query: 1266 IIEEYDSPTKLLENKSSSFAQLVAEYTQ 1293
I+E +P ++ + F + V+E +
Sbjct: 246 EIKEEGTPDEV----VAVFMEGVSEVEK 269
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 4e-10
Identities = 54/226 (23%), Positives = 98/226 (43%), Gaps = 37/226 (16%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KA 683
+ D++L+V G V + G G+GK++L + I G SGT+ G +
Sbjct: 20 VNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARL 79
Query: 684 YVA---QSPWIQSG-NIEDNILFGKPMDREKYDRVL--------EACSLKKDLEILSFGD 731
+A Q + G + +N+ G R +L E + ++ E+L F
Sbjct: 80 GIARTFQITRLFPGLTVLENVAVG-AHARLGLSGLLGRPRARKEEREARERARELLEFVG 138
Query: 732 QT-VIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLR 790
+ NLS GQ++R++IARAL + L D+P + + + E L L+R
Sbjct: 139 LGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGL-----NPEETEELAELIR 193
Query: 791 S------KTVIYVTHQVEFL-PAADLILVMKDGKITQAGKYNDILN 829
T++ + H ++ + AD I+V+ G++ G ++ N
Sbjct: 194 ELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRN 239
|
Length = 250 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 4e-10
Identities = 72/290 (24%), Positives = 132/290 (45%), Gaps = 47/290 (16%)
Query: 602 SDVVEKHPRGSSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSL 661
S+ P S AI++ + ++ + + ++ V G + G G+GKS++
Sbjct: 27 SEAKASIPGSMSTVAIDLAGVSKSY---GDKAVVNGLSFTVASGECFGLLGPNGAGKSTI 83
Query: 662 LSCILGEVPKISGTLKLCG----TKAYVAQS-----PWIQSGNIE------DNIL-FGK- 704
ILG +G + + G +A +A++ P Q N++ +N+L FG+
Sbjct: 84 ARMILGMTSPDAGKITVLGVPVPARARLARARIGVVP--QFDNLDLEFTVRENLLVFGRY 141
Query: 705 -PMDREKYDRVLEACSLKKDLEILSFGD-QTVIGERGINLSGGQKQRIQIARALYQDADI 762
M + + V+ + +L F ++ R +LSGG K+R+ +ARAL D +
Sbjct: 142 FGMSTREIEAVIPS--------LLEFARLESKADARVSDLSGGMKRRLTLARALINDPQL 193
Query: 763 YLFDDPFSAVDAHTGSHLFKEVLLGLL-RSKTVIYVTHQVEFLPAA----DLILVMKDGK 817
+ D+P + +D H HL E L LL R KT++ TH F+ A D + V++ G+
Sbjct: 194 LILDEPTTGLDPH-ARHLIWERLRSLLARGKTILLTTH---FMEEAERLCDRLCVLEAGR 249
Query: 818 ITQAGKYNDILNS--GTDFMVLVGAHQQALSALDSIEGGPVSERISMNKE 865
G+ + +++ G + + G LS+L P + RI ++ E
Sbjct: 250 KIAEGRPHALIDEHIGCQVIEIYGGDPHELSSLV----KPYARRIEVSGE 295
|
Length = 340 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 4e-10
Identities = 52/183 (28%), Positives = 87/183 (47%), Gaps = 33/183 (18%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIG---LHD 1127
VL+G++ + G IVG +GSGKSTL+ L + PT+GE++ +G ++S +
Sbjct: 20 VLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAK 79
Query: 1128 LRSR-LSIIPQ------DPTMFEGTVRNNLDPL-------EEYKDEEIWEALDKCQLGDE 1173
LR++ L I Q D T E N PL +E K E +E L+K L
Sbjct: 80 LRNKKLGFIYQFHHLLPDFTALE----NVAMPLLIGKKSVKEAK-ERAYEMLEKVGLEHR 134
Query: 1174 VRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQT 1233
+ ++ +L S G+RQ V + R L+ + +++ DE T ++D +I
Sbjct: 135 INHRPSEL-----------SGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDL 183
Query: 1234 LRQ 1236
+ +
Sbjct: 184 MLE 186
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (149), Expect = 4e-10
Identities = 53/212 (25%), Positives = 93/212 (43%), Gaps = 32/212 (15%)
Query: 619 IVDGNFAWDIS------SNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LG 667
+ + D N +RD ++ + G G GKS++L + L
Sbjct: 2 VSEAPIVMDCKLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLV 61
Query: 668 EVPKISGTLKLCGTKAY---------------VAQSPWIQSGNIEDNILFGKPMDREKYD 712
+ + G + G Y V Q P S +I DN+ FG ++R K D
Sbjct: 62 KGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGD 121
Query: 713 RVLEACSLKKDLEILSFGDQTV--IGERGINLSGGQKQRIQIARALYQDADIYLFDDPFS 770
+K L+ + D+ + G++LSGGQ+QR+ IARA+ + ++ L D+P S
Sbjct: 122 ---LGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCS 178
Query: 771 AVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVE 802
A+D + +E+++ L + T+ VTH ++
Sbjct: 179 ALDP-IATRRVEELMVELKKDYTIALVTHNMQ 209
|
Length = 261 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 5e-10
Identities = 60/204 (29%), Positives = 91/204 (44%), Gaps = 51/204 (25%)
Query: 1072 LRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLR-- 1129
+ + G I+G +GSGKSTL++ L R++EPT GEI++DG +I+ + +LR
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 1130 --SRLSIIPQD----PTMFEGTVRNNLD--------PLEEYKDEEIWEALDKCQLGDEVR 1175
++S++ Q P TV N+ P E ++E EAL+ L
Sbjct: 104 RRKKISMVFQSFALLPHR---TVLENVAFGLEVQGVPKAE-REERALEALELVGL----- 154
Query: 1176 NKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLI----- 1230
EG D E S G +Q V L R L +L++DEA +A D LI
Sbjct: 155 --EGYADKYPNE----LSGGMQQRVGLARALANDPDILLMDEAF----SALDPLIRTEMQ 204
Query: 1231 ------QQTLRQHFSDCTVITIAH 1248
Q L++ T++ I H
Sbjct: 205 DELLELQAKLKK-----TIVFITH 223
|
Length = 386 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 5e-10
Identities = 53/207 (25%), Positives = 92/207 (44%), Gaps = 46/207 (22%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-----EVPKISGTLKLCGTKAY----- 684
L+ +++ + A+ G G GKS+ L C+ + +I G+++L G Y
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 685 ----------VAQSPWIQSGNIEDNI-----------------LFGKPMDREKYDRVLEA 717
V QSP +I +NI L G+ D++ D ++E
Sbjct: 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRD-DKDAEDELVER 179
Query: 718 CSLKKDL--EILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAH 775
+ L E+ + + + LSGGQ+QR+ IAR L D ++ L D+P SA+D
Sbjct: 180 SLRQAALWDEV-----NDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPI 234
Query: 776 TGSHLFKEVLLGLLRSKTVIYVTHQVE 802
S + ++++ L TV+ VTH ++
Sbjct: 235 ATSKI-EDLIEELAEEYTVVVVTHNMQ 260
|
Length = 305 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (149), Expect = 5e-10
Identities = 60/241 (24%), Positives = 110/241 (45%), Gaps = 25/241 (10%)
Query: 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 676
+E+ + F ++ S+ L ++ + G V++ G GSGKS+ I G + G +
Sbjct: 5 LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV 64
Query: 677 KLCGTK-------------AYVAQSPWIQ--SGNIEDNILFGKPMDREKYDRVLEACSLK 721
K+ G V Q+P Q +ED++ FG M+ + R E +
Sbjct: 65 KIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFG--MENQGIPR--EEMIKR 120
Query: 722 KDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLF 781
D +L+ LSGGQKQR+ +A + +I + D+ S +D +
Sbjct: 121 VDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIM 180
Query: 782 KEVLLGLLRSK---TVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSGTDFMVLV 838
+ ++ ++ K TV+ +TH ++ ++D ILVMK G+I + +++ + D MV +
Sbjct: 181 R--VIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATSED-MVEI 237
Query: 839 G 839
G
Sbjct: 238 G 238
|
Length = 277 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 5e-10
Identities = 59/209 (28%), Positives = 99/209 (47%), Gaps = 45/209 (21%)
Query: 648 VAVCGTVGSGKSSLLSCILGEVPK---ISGTLKLCGTK----------AYVAQSP-WIQS 693
+AV G+ G+GK++L++ + PK SG++ L G AYV Q +I +
Sbjct: 54 LAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPT 113
Query: 694 GNIEDNILF----------GKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGI--N 741
+ ++++F K RE+ D VL+A L+K T IG G
Sbjct: 114 LTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRK-------CANTRIGVPGRVKG 166
Query: 742 LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LRSKTVIYVTHQ 800
LSGG+++R+ A L D + D+P S +D+ + + VL GL + KT+I HQ
Sbjct: 167 LSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQ-VLKGLAQKGKTIICTIHQ 225
Query: 801 VEFLPAADL------ILVMKDGKITQAGK 823
P+++L I++M +G++ G
Sbjct: 226 ----PSSELFELFDKIILMAEGRVAYLGS 250
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 6e-10
Identities = 53/211 (25%), Positives = 98/211 (46%), Gaps = 24/211 (11%)
Query: 1059 NLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGI 1118
NL + AP VL+ + G I G TGSGK++L+ + +EP+ G+I G
Sbjct: 44 NLCLVGAP----VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG- 98
Query: 1119 NISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLD---PLEEYKDEEIWEALDKCQLGDEVR 1175
R+S Q + GT++ N+ +EY+ + + +A CQL +++
Sbjct: 99 ------------RISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKA---CQLEEDIT 143
Query: 1176 NKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLI-QQTL 1234
K ++ + E G S GQR + L R + K + + +LD +D T+ I + +
Sbjct: 144 KFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCV 203
Query: 1235 RQHFSDCTVITIAHRITSVIDSDMVLLLSHG 1265
+ ++ T I + ++ + +D +L+L G
Sbjct: 204 CKLMANKTRILVTSKMEHLKKADKILILHEG 234
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 6e-10
Identities = 54/222 (24%), Positives = 92/222 (41%), Gaps = 61/222 (27%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSG 694
L DI+ V G + G G+GK++ + ILG + SG +
Sbjct: 16 LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEV------------------ 57
Query: 695 NIEDNILFGKPMDREKYDRV---LEACSLKKDLEILSFGDQTV-IGE-RGIN-------- 741
+ GKP+D +R+ E L ++++ DQ V + + +G+
Sbjct: 58 -----LFDGKPLDIAARNRIGYLPEERGLYPKMKVI---DQLVYLAQLKGLKKEEARRRI 109
Query: 742 -------------------LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFK 782
LS G +Q++Q A+ D ++ + D+PFS +D L K
Sbjct: 110 DEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDP-VNVELLK 168
Query: 783 EVLLGLLRS-KTVIYVTHQVEFLPA-ADLILVMKDGKITQAG 822
+V+ L R+ KTVI THQ+E + D +L++ G+ G
Sbjct: 169 DVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (148), Expect = 6e-10
Identities = 51/214 (23%), Positives = 98/214 (45%), Gaps = 22/214 (10%)
Query: 1050 PTHGEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPT 1109
P H ++ ++V Y L LV + P +G +G GKSTL++ R+ +
Sbjct: 16 PDHSVFEVEGVKVFYGGFLALV--DVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLI 73
Query: 1110 AGEIVIDGINISSIGLHD-------LRSRLSIIPQDPTMFEGTVRNNL--DPLEE-YK-- 1157
G V + ++D LR ++ ++ Q P F ++ N+ P YK
Sbjct: 74 PGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGN 133
Query: 1158 -DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLD 1216
DE + ++L + + +EV++K + E G S GQ+Q +C+ R + K VL++D
Sbjct: 134 LDELVEDSLRRAAIWEEVKDK-------LKEKGTALSGGQQQRLCIARAIAMKPDVLLMD 186
Query: 1217 EATASVDTATDNLIQQTLRQHFSDCTVITIAHRI 1250
E +++D + +++ + T+I + H +
Sbjct: 187 EPCSALDPISTRQVEELCLELKEQYTIIMVTHNM 220
|
Length = 274 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 6e-10
Identities = 59/215 (27%), Positives = 96/215 (44%), Gaps = 43/215 (20%)
Query: 634 TLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILG--EVPKISGTLKLCG----------- 680
L+ ++L + G VA+ G+ GSGKS+LL +LG + P SG + G
Sbjct: 20 VLKGVSLSIGKGEIVAIVGSSGSGKSTLLH-LLGGLDNPT-SGEVLFNGQSLSKLSSNER 77
Query: 681 ------TKAYVAQ-SPWIQSGNIEDNI----LFGKPMDREKYDR---VLEACSLKKDLEI 726
++ Q + +N+ L GK +E +R +LE L+ +
Sbjct: 78 AKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRIN- 136
Query: 727 LSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLL 786
R LSGG++QR+ IARAL + L D+P +D + +F +++L
Sbjct: 137 ----------HRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIF-DLML 185
Query: 787 GLLRSK--TVIYVTHQVEFLPAADLILVMKDGKIT 819
L R + + VTH +E D +L MKDG++
Sbjct: 186 ELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (148), Expect = 6e-10
Identities = 54/241 (22%), Positives = 106/241 (43%), Gaps = 24/241 (9%)
Query: 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVE-----P 1108
++ + NL + Y L+ ++ P T ++G +G GKST I+ L R+ +
Sbjct: 12 QIKVENLNLWYGEKQ--ALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCR 69
Query: 1109 TAGEIVIDGINISSIGLH--DLRSRLSIIPQDPTMFEGTVRNNL-------DPLEEYKDE 1159
G++ I+G +I + +LR + ++ Q P F ++ +N+ ++ D
Sbjct: 70 IEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDG 129
Query: 1160 EIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEAT 1219
+ AL L DE + R+ + S GQ+Q +C+ R L K K+++ DE T
Sbjct: 130 VVENALRSAALWDETSD-------RLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPT 182
Query: 1220 ASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLE 1278
+++D + I+ + D T++ + H + SD G + E+ ++
Sbjct: 183 SALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFH 242
Query: 1279 N 1279
N
Sbjct: 243 N 243
|
Length = 258 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (148), Expect = 7e-10
Identities = 48/183 (26%), Positives = 89/183 (48%), Gaps = 24/183 (13%)
Query: 1085 TGIVGRTGSGKSTLIQTLFRI--VEPT---AGEIVI--DGINISSIGLH--DLRSRLSII 1135
T ++G +G GKST ++ R+ + P GEI++ D +NI S + ++R R+S++
Sbjct: 45 TALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMV 104
Query: 1136 PQDPTMFEGTVRNNLD--------PLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTE 1187
Q P F ++ N+ +E + AL L DEV+++ G L
Sbjct: 105 FQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDL------ 158
Query: 1188 NGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIA 1247
N S GQ+Q +C+ R L ++L+ DE T+++D I++ + + T++ +
Sbjct: 159 -AFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVT 217
Query: 1248 HRI 1250
H +
Sbjct: 218 HNM 220
|
Length = 265 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 7e-10
Identities = 55/231 (23%), Positives = 96/231 (41%), Gaps = 49/231 (21%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSG 694
L+ +NL V+ G A+ G G+GKS+L+ + G GT+ + Y + +
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINN-INYNKLDHKLAAQ 79
Query: 695 N----------------IEDNILFG---------------KPMDREKYDRVLEACSLKKD 723
+ +N+ G + M R + +L LK D
Sbjct: 80 LGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREM-RVRAAMMLLRVGLKVD 138
Query: 724 LEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKE 783
L+ E+ NLS KQ ++IA+ L DA + + D+P S++ +LF
Sbjct: 139 LD-----------EKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLF-- 185
Query: 784 VLLGLLRS--KTVIYVTHQV-EFLPAADLILVMKDGKITQAGKYNDILNSG 831
+++ LR ++Y++H++ E D VMKDG +G +D+ N
Sbjct: 186 LIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSNDD 236
|
Length = 510 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 8e-10
Identities = 62/221 (28%), Positives = 102/221 (46%), Gaps = 42/221 (19%)
Query: 1069 PLVLRGLTCTF-------------PGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVI 1115
PL+L ++ + P G +VGR+G GKSTL++ L + P+AGE++
Sbjct: 12 PLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELL- 70
Query: 1116 DGINISSIGLHDLRSRLSIIPQDPTMFE-GTVRNN--LDPLEEYKDEEIWEALDKCQLGD 1172
+ L + R ++ QD + V +N L +++D + +AL L D
Sbjct: 71 ----AGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAAL-QALAAVGLAD 125
Query: 1173 EVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTAT----DN 1228
R E S GQ+Q V L R L+ + +L+LDE ++D T +
Sbjct: 126 -----------RANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQD 174
Query: 1229 LIQQTLRQH-FSDCTVITIAHRIT-SVIDSDMVLLLSHGII 1267
LI+ +QH F TV+ + H ++ +V +D VLL+ G I
Sbjct: 175 LIESLWQQHGF---TVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
Length = 257 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 8e-10
Identities = 45/173 (26%), Positives = 75/173 (43%), Gaps = 20/173 (11%)
Query: 1070 LVLRGLT-CTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDL 1128
++ GL+ G + G GSGK+TL++ + ++ P AG I +DG I D+
Sbjct: 16 VLFSGLSFTLAAGE-ALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDG---GDIDDPDV 71
Query: 1129 RSRLSII-PQDPTMFEGTVRNNLDPLEEYK---DEEIWEALDKCQLGDEVRNKEGKLDSR 1184
+ ++ TV NL+ + + +I AL+ L G L
Sbjct: 72 AEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYL--- 128
Query: 1185 VTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQH 1237
S GQ++ V L R+L+ + +LDE TA++D A L + +R H
Sbjct: 129 --------SAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAH 173
|
Length = 207 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 8e-10
Identities = 48/202 (23%), Positives = 80/202 (39%), Gaps = 35/202 (17%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVP---KISGTLKLCGTK--------- 682
L ++N + G V + G G GKS+LLS ++G + +G L L +
Sbjct: 18 LANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQR 77
Query: 683 --AYVAQSPWI-QSGNIEDNILFGKPMD------REKYDRVLEACSLKKDLEILSFGDQT 733
+ Q + ++ N+LF P R + LE L
Sbjct: 78 QIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFH--QDPAT- 134
Query: 734 VIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKT 793
LSGGQ+ R+ + RAL L D+PFS +D F++ + +R+
Sbjct: 135 --------LSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQ-FRQWVFSEVRAAG 185
Query: 794 --VIYVTHQVEFLPAADLILVM 813
+ VTH ++ +PA ++ M
Sbjct: 186 IPTVQVTHDLQDVPAGSRVIEM 207
|
Length = 213 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 63.0 bits (153), Expect = 1e-09
Identities = 54/208 (25%), Positives = 94/208 (45%), Gaps = 16/208 (7%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------------ 682
LR IN+ + G +V + G G+GKSSL + G + + G
Sbjct: 1302 LRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFK 1361
Query: 683 -AYVAQSPWIQSGNIEDNI-LFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGI 740
+ Q P + SG++ N+ F + D E + LE LK + L E G
Sbjct: 1362 ITIIPQDPVLFSGSLRMNLDPFSQYSDEEVW-WALELAHLKTFVSALPDKLDHECAEGGE 1420
Query: 741 NLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQ 800
NLS GQ+Q + +ARAL + I + D+ +AVD T +L + + TV+ + H+
Sbjct: 1421 NLSVGQRQLVCLARALLRKTKILVLDEATAAVDLET-DNLIQSTIRTQFEDCTVLTIAHR 1479
Query: 801 VEFLPAADLILVMKDGKITQAGKYNDIL 828
+ + ++V+ G++ + G +++L
Sbjct: 1480 LNTIMDYTRVIVLDKGEVAEFGAPSNLL 1507
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 1e-09
Identities = 59/232 (25%), Positives = 96/232 (41%), Gaps = 56/232 (24%)
Query: 634 TLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTLKLCGTKAYVAQSPWIQ 692
TL+D++ + G ++ G GSGKS++ ++G E K SG + + I
Sbjct: 24 TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVK-SGEI-------FYNNQA-IT 74
Query: 693 SGNIED-----NILFGKPMDR-----EKYD-----------------RVLEACSLKKDLE 725
N E I+F P ++ KYD RV EA ++
Sbjct: 75 DDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALK---QVD 131
Query: 726 ILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL 785
+L D LSGGQKQR+ IA L + + + D+ S +D ++ L
Sbjct: 132 MLERAD-----YEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDA-----RQNL 181
Query: 786 LGLLR------SKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSG 831
L L+R + T+I +TH + AD ++VM G + + G +I +
Sbjct: 182 LDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHA 233
|
Length = 269 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (148), Expect = 1e-09
Identities = 56/230 (24%), Positives = 99/230 (43%), Gaps = 40/230 (17%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS 1130
+L ++ T G I+G G+GKSTL++ L + P +GE+ ++G ++ +L
Sbjct: 17 LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELAR 76
Query: 1131 RLSIIPQDPTM-FEGTVRN----NLDPLEEYKDEE---IWEALDKCQLGDEVRNKEGKLD 1182
R +++PQ ++ F TV P + E+ + AL + L
Sbjct: 77 RRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDL-------AHLAG 129
Query: 1183 SRVTENGENWSMGQRQLVCLGRVLL------KKSKVLVLDEATASVDTATDNLIQQTLRQ 1236
+ S G++Q V L RVL + L+LDE T+++D A + + + RQ
Sbjct: 130 RDYPQ----LSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQ 185
Query: 1237 --HFSDCTVITIAHRITSVID-------SDMVLLLSHGIIEEYDSPTKLL 1277
H VI + H D +D ++LL G + +P ++L
Sbjct: 186 LAHERGLAVIVVLH------DLNLAARYADRIVLLHQGRLVADGTPAEVL 229
|
Length = 258 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 1e-09
Identities = 47/162 (29%), Positives = 78/162 (48%), Gaps = 20/162 (12%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS 1130
L + P + ++G G+GKSTL + I++PT+G ++I G I+ + ++R
Sbjct: 19 ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRK 78
Query: 1131 RLSIIPQDP--TMFEGTVRN-------NLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKL 1181
+ ++ Q+P +F TV NL EE + AL LG E +L
Sbjct: 79 FVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALH--MLGLE------EL 130
Query: 1182 DSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVD 1223
RV + S G+++ V + V+ + +VLVLDE TA +D
Sbjct: 131 RDRVP---HHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLD 169
|
Length = 277 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 1e-09
Identities = 55/207 (26%), Positives = 102/207 (49%), Gaps = 33/207 (15%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKA-YVAQSPWIQS 693
L ++NLKV A+ G G+GKS+LL C+ G K SG++ G + + + +++
Sbjct: 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALEN 73
Query: 694 G--------------NIEDNILFGK-PM-----DREKYDRVLEACSLKKDLEILSFGDQT 733
G ++ DN+ G+ P D++K R +A + D++I D
Sbjct: 74 GISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDI----DPR 129
Query: 734 VIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSK- 792
+ LS Q Q I+IA+A +A I + D+P S++ +HLF ++ L+ +
Sbjct: 130 ---AKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFT--IIRKLKERG 184
Query: 793 -TVIYVTHQV-EFLPAADLILVMKDGK 817
++Y++H++ E D I +++DG+
Sbjct: 185 CGIVYISHKMEEIFQLCDEITILRDGQ 211
|
Length = 491 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 1e-09
Identities = 54/195 (27%), Positives = 96/195 (49%), Gaps = 28/195 (14%)
Query: 1086 GIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDG---INISSIGLHDLRSRLSIIPQD---- 1138
G+VG +G GKST + + +V+ T GE+ G + + +RS + +I QD
Sbjct: 51 GVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLAS 110
Query: 1139 --PTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRN---KEGKLDSRVTENGENWS 1193
P M G + +PL Y + L + ++ D V+ K G L + + +S
Sbjct: 111 LNPRMTIGEIIA--EPLRTYHPK-----LSRQEVKDRVKAMMLKVGLLPNLINRYPHEFS 163
Query: 1194 MGQRQLVCLGRVLLKKSKVLVLDEATASVDTATD----NLIQQTLRQHFSDCTVITIAHR 1249
GQ Q + + R L+ + K+++ DE +++D + NL+QQ R+ ++I IAH
Sbjct: 164 GGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQRE--MGLSLIFIAHD 221
Query: 1250 ITSVID--SDMVLLL 1262
+ +V+ SD VL++
Sbjct: 222 L-AVVKHISDRVLVM 235
|
Length = 331 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 2e-09
Identities = 59/221 (26%), Positives = 100/221 (45%), Gaps = 35/221 (15%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGT------------LKLCGTK 682
L ++N+++ G V + G GSGKS+L+ + G + SG +KL +
Sbjct: 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82
Query: 683 AYVA---QSPWIQ--SGNIEDNILFGKPM-----DREKYDRVLEACSLKKDLEILSFGDQ 732
V Q P Q IE +I FG P+ + E +RV A ++ L+ + D+
Sbjct: 83 KKVGLVFQYPEYQLFEETIEKDIAFG-PINLGLSEEEIENRVKRAMNIVG-LDYEDYKDK 140
Query: 733 TVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSK 792
+ LSGGQK+R+ IA + + I + D+P + +D + ++ L +
Sbjct: 141 S-----PFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKI--KELHKE 193
Query: 793 ---TVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDILN 829
T+I V+H +E + AD I+VM GK G ++
Sbjct: 194 YNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFK 234
|
Length = 287 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.3 bits (146), Expect = 2e-09
Identities = 65/223 (29%), Positives = 104/223 (46%), Gaps = 43/223 (19%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCI-LGEVPKISGTLKLCGTKAYVAQSP---- 689
L +++L V G V G G+GKS+L+ C+ L E P SG++ + G +
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT-SGSVIVDGQDLTTLSNSELTK 79
Query: 690 -------------WIQSGNIEDNI-----LFGKPMDREKYDRVLEACSLKKDLEILSFGD 731
+ S + N+ L P D K +V E +L + GD
Sbjct: 80 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIK-RKVTELLAL------VGLGD 132
Query: 732 QTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVD-AHTGS--HLFKEV--LL 786
+ NLSGGQKQR+ IARAL + + L D+ SA+D A T S L KE+ L
Sbjct: 133 KH--DSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRL 190
Query: 787 GLLRSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDIL 828
GL T++ +TH+++ + D + V+ +G++ + G ++I
Sbjct: 191 GL----TILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIF 229
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 2e-09
Identities = 55/200 (27%), Positives = 95/200 (47%), Gaps = 36/200 (18%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRI--------VEPTAGEIVIDGINISS 1122
L ++ P T +G +G GKSTL++ R+ +E GEI +DG NI
Sbjct: 40 ALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIE---GEIRLDGQNIYD 96
Query: 1123 IGLH--DLRSRLSIIPQDPTMFEGTVRNN------LDPLEEYK--DEEIWEALDKCQLGD 1172
+ +LR R+ ++ Q P F ++ N L + + DE + +L L D
Sbjct: 97 KKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWD 156
Query: 1173 EVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVD---TAT-DN 1228
EV++ R+ EN S GQ+Q + + R + + +VL+LDE T+++D T +
Sbjct: 157 EVKD-------RLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEE 209
Query: 1229 LIQQTLRQHFSDCTVITIAH 1248
LI + L+ + T++ + H
Sbjct: 210 LITE-LKSKY---TIVIVTH 225
|
Length = 272 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 2e-09
Identities = 48/185 (25%), Positives = 76/185 (41%), Gaps = 35/185 (18%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKA----YVAQSPW 690
++ + G + + G GSGK++LL I G +P +GT+KL G +
Sbjct: 18 FSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHY 77
Query: 691 IQSGN-------IEDNILFGKPM---DREKYDRVLEACSLKKDLEILSFGDQTVIGERGI 740
+ N + +N+ F + LEA L L L FG
Sbjct: 78 LGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLA-PLAHLPFG---------- 126
Query: 741 NLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSK-----TVI 795
LS GQK+R+ +AR L + I++ D+P +A+DA + L+R+ VI
Sbjct: 127 YLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAA-----VALFAELIRAHLAQGGIVI 181
Query: 796 YVTHQ 800
TH
Sbjct: 182 AATHI 186
|
Length = 207 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 2e-09
Identities = 45/148 (30%), Positives = 72/148 (48%), Gaps = 17/148 (11%)
Query: 696 IEDNILFGKPMD-----REKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRI 750
IE +I+FG P+ E R K +E++ D++ + LSGGQK+R+
Sbjct: 123 IEKDIIFG-PVSMGVSKEEAKKRA------AKYIELVGL-DESYLQRSPFELSGGQKRRV 174
Query: 751 QIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRS-KTVIYVTHQVE-FLPAAD 808
+A L + D +FD+P + +D G E+ L + KT+I VTH ++ L
Sbjct: 175 ALAGILAMEPDFLVFDEPTAGLDPQ-GVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTK 233
Query: 809 LILVMKDGKITQAGKYNDILNSGTDFMV 836
+ KDGKI + G DIL+ F++
Sbjct: 234 RTIFFKDGKIIKDGDTYDILSD-NKFLI 260
|
Length = 305 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 2e-09
Identities = 31/97 (31%), Positives = 55/97 (56%), Gaps = 10/97 (10%)
Query: 740 INLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLR-SKTV---- 794
+LSGG+KQR+ I RAL ++ L D+P +++D +E+L L R ++ +
Sbjct: 127 GSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRK----RELLPYLERLAREINIPI 182
Query: 795 IYVTHQV-EFLPAADLILVMKDGKITQAGKYNDILNS 830
+YV+H + E L AD ++V++ GK+ G ++ S
Sbjct: 183 LYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWAS 219
|
Length = 352 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.8 bits (142), Expect = 3e-09
Identities = 60/225 (26%), Positives = 98/225 (43%), Gaps = 41/225 (18%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LGEVPKISGTLKLCGTKAY----- 684
L +NL++ A+ G GSGKS+LL L ++SG + L G +
Sbjct: 19 LDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVI 78
Query: 685 --------VAQSP-WIQSGNIEDNILFGKPMDR------EKYDRVLEACSLKKDLEILSF 729
V Q P I + +I +N+ G ++R E +RV A LE
Sbjct: 79 ELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWA------LEKAQL 132
Query: 730 GDQTV--IGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLG 787
D+ + LSGGQ+QR+ IARAL ++ L D+P + +D + + + + L
Sbjct: 133 WDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKI-ESLFLE 191
Query: 788 LLRSKTVIYVTHQVEFLPAA----DLILVMKDGKITQAGKYNDIL 828
L + T++ VTH F A D + + G+I + G ++
Sbjct: 192 LKKDMTIVLVTH---FPQQAARISDYVAFLYKGQIVEWGPTREVF 233
|
Length = 250 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 3e-09
Identities = 48/218 (22%), Positives = 92/218 (42%), Gaps = 43/218 (19%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSI-----GL 1125
L+ ++ G + GI+G G+GKSTL++ + I +PT+G++ + G ++ + G
Sbjct: 42 ALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTG-KVAPLIELGAGF 100
Query: 1126 -HDLRSRLSIIPQDPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSR 1184
+L R +I G + + K +EI ++ +LGD +D
Sbjct: 101 DPELTGRENIY------LRGLILGLTRKEIDEKVDEI---IEFAELGD-------FIDQP 144
Query: 1185 VTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTA--------TDNLIQQTLRQ 1236
V + +S G + + +L+LDE A D A + L+++
Sbjct: 145 V----KTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNK-- 198
Query: 1237 HFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSP 1273
T++ ++H + ++ D + L HG I SP
Sbjct: 199 -----TIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSP 231
|
Length = 249 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (143), Expect = 3e-09
Identities = 45/183 (24%), Positives = 90/183 (49%), Gaps = 20/183 (10%)
Query: 1085 TGIVGRTGSGKSTLIQTLFRIVEPTAG-----EIVIDGINISSIGLHDL--RSRLSIIPQ 1137
TG +G +G GKST++++L R+ + G + G ++ G+ + R + ++ Q
Sbjct: 37 TGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQ 96
Query: 1138 DPTMFEGTVRNNLD---PLEEYKD---EEIWEALDKCQLGDEVRNKEGKLDSRVTENGEN 1191
P F ++ +N+ L YK + + AL L DEV++K + +G +
Sbjct: 97 QPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDK-------LKVSGLS 149
Query: 1192 WSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRIT 1251
S GQ+Q +C+ R + + +VL+LDE +++D +++ + + D T+ + H +
Sbjct: 150 LSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQ 209
Query: 1252 SVI 1254
I
Sbjct: 210 QAI 212
|
Length = 261 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.5 bits (141), Expect = 4e-09
Identities = 63/241 (26%), Positives = 106/241 (43%), Gaps = 45/241 (18%)
Query: 614 ETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LGE 668
+ I+I NF + + L++IN+ A+ G G GKS+LL + +
Sbjct: 2 DPKIKIRGVNFFY---HKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVS 58
Query: 669 VPKISGTLKLCGTKAY---------------VAQSPWIQSGNIEDNILFGKPM----DRE 709
++ G + L Y V Q P +I DN+ FG M +
Sbjct: 59 GARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQS 118
Query: 710 KYDRVLEACSLKKDLEILSFGDQTV--IGERGINLSGGQKQRIQIARALYQDADIYLFDD 767
+ D V+E K L + D+ + + G+ LSGGQ+QR+ IAR L + ++ L D+
Sbjct: 119 RLDEVVE-----KSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDE 173
Query: 768 PFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVE----------FLPAADLILVMKDGK 817
P SA+D + +E++ L ++ T+ VTH ++ FL DL+ + G+
Sbjct: 174 PCSALDP-VSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGE 232
Query: 818 I 818
I
Sbjct: 233 I 233
|
Length = 251 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 4e-09
Identities = 48/196 (24%), Positives = 85/196 (43%), Gaps = 33/196 (16%)
Query: 1059 NLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGI 1118
N+ Y L L+ L+ G + IVG G+GKSTL++ L + P +G + + G
Sbjct: 326 NVSKGYDGGRLL-LKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKV-GE 383
Query: 1119 NISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEEYKDEEIWEAL-DKCQLGDE--VR 1175
+ ++ Q R+ LDP D+ + E L + GDE VR
Sbjct: 384 TV----------KIGYFDQH--------RDELDP-----DKTVLEELSEGFPDGDEQEVR 420
Query: 1176 NKEGKLD---SRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQ 1232
G+ + S G++ + L ++LL+ +L+LDE T +D + +++
Sbjct: 421 AYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEE 480
Query: 1233 TLRQHFSDCTVITIAH 1248
L + TV+ ++H
Sbjct: 481 ALLDF--EGTVLLVSH 494
|
Length = 530 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 4e-09
Identities = 54/227 (23%), Positives = 89/227 (39%), Gaps = 47/227 (20%)
Query: 633 PTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK---------- 682
+ +++ G + G GSGKS+LL + G + +GT+ L G
Sbjct: 15 LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARA 74
Query: 683 ---AYVAQ-SPWIQSGNIEDNILFGK-----------PMDREKYDRVLEACSLKKDLEIL 727
A V Q S + D + G+ P D DR L L
Sbjct: 75 RRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELS------ 128
Query: 728 SFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLG 787
D+ + LSGG++QR+ +ARAL Q+ + L D+P + +D + L
Sbjct: 129 HLADRDMS-----TLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRA-----QLETLA 178
Query: 788 LLRSK-----TVIYVTHQVEF-LPAADLILVMKDGKITQAGKYNDIL 828
L+R TV+ H + D ++V+ G++ AG ++L
Sbjct: 179 LVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVL 225
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 4e-09
Identities = 50/173 (28%), Positives = 86/173 (49%), Gaps = 27/173 (15%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDG---INISSIGLHD 1127
VL+G+ T G ++G G+GKSTL++ + IV P +G + I G ++ H
Sbjct: 26 VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQ 85
Query: 1128 LRSRLSIIPQDPTMFEG-TVRNNL------DPLEEYKDEEIWEALDKCQLGDEVRNKEGK 1180
L + ++PQ+P +F +V+ N+ K +++ AL CQL + G
Sbjct: 86 L--GIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALG-CQLDLDS--SAGS 140
Query: 1181 LDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTA-TDNLIQQ 1232
L+ + RQ+V + R L++ S++L+LDE TAS+ A T+ L +
Sbjct: 141 LE-----------VADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSR 182
|
Length = 510 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 4e-09
Identities = 50/154 (32%), Positives = 69/154 (44%), Gaps = 28/154 (18%)
Query: 637 DINLKVFHGMRVAVCGTVGSGKSSLLSCILGEV-PKISGTLKLCGTKA------YVAQSP 689
++ +V G + +CG G GKSSL ILGE+ P G L TK YV Q P
Sbjct: 470 SLSFEVPSGNNLLICGPNGCGKSSLFR-ILGELWPVYGGRL----TKPAKGKLFYVPQRP 524
Query: 690 WIQSGNIEDNILFGKPMDREKY-DRVLEACSLKKDLEILSFGDQTVIGERGIN------- 741
++ G + D I++ P E R L L++ L+ + I ER
Sbjct: 525 YMTLGTLRDQIIY--PDSSEDMKRRGLSDKDLEQILDNVQLTH---ILEREGGWSAVQDW 579
Query: 742 ---LSGGQKQRIQIARALYQDADIYLFDDPFSAV 772
LSGG+KQRI +AR Y + D+ SAV
Sbjct: 580 MDVLSGGEKQRIAMARLFYHKPQFAILDECTSAV 613
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 4e-09
Identities = 64/246 (26%), Positives = 104/246 (42%), Gaps = 37/246 (15%)
Query: 1072 LRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIG----LHD 1127
L + T G T +G TGSGKST++Q L + PT G + +D I+S +
Sbjct: 23 LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82
Query: 1128 LRSRLSIIPQDP--TMFEGTV-------RNNLDPLEEYKDEEIWEALDKCQLGDEVRNKE 1178
+R ++ ++ Q P +FE TV N +E + E L + + + K
Sbjct: 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEK- 141
Query: 1179 GKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQ-H 1237
N S GQ + V + +L + K+LVLDE TA +D + ++ H
Sbjct: 142 ---------NPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLH 192
Query: 1238 FSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTK------LLENKS------SSF 1284
S T++ + H + V + +D V +L G + P LE K + F
Sbjct: 193 QSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQDVDFLEEKQLGVPKITKF 252
Query: 1285 AQLVAE 1290
AQ +A+
Sbjct: 253 AQRLAD 258
|
Length = 280 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 5e-09
Identities = 42/121 (34%), Positives = 65/121 (53%), Gaps = 12/121 (9%)
Query: 685 VAQSPWIQSGNIEDNILFGKPM----DREKYDRVLEACSLKKDLEILSFGDQTV--IGER 738
V Q P + +I +NI F D++ D ++E SLK+ + DQ + +
Sbjct: 106 VFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVET-SLKQ----AALWDQVKDDLHKS 160
Query: 739 GINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVT 798
+ LSGGQ+QR+ IARA+ DI L D+P SA+D + L +E + L ++ T+I VT
Sbjct: 161 ALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQL-EETMFELKKNYTIIIVT 219
Query: 799 H 799
H
Sbjct: 220 H 220
|
Length = 267 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.8 bits (142), Expect = 5e-09
Identities = 56/196 (28%), Positives = 90/196 (45%), Gaps = 36/196 (18%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LGEVPKISGTLKLCGTKAY----- 684
++ +N + A+ G G GKS+ L I L +G L G Y
Sbjct: 55 VKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114
Query: 685 ----------VAQSPWIQSGNIEDNILFGKPM----DREKYDRVLEACSLKKDL---EIL 727
V Q P +I DNI +G + D+++ + ++E SL+K E+
Sbjct: 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEK-SLRKAALWDEVS 173
Query: 728 SFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLG 787
D+ +G LSGGQ+QR+ +AR L + +I L D+P SA+D + + E L+
Sbjct: 174 DRLDKNALG-----LSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKI--EDLIQ 226
Query: 788 LLR-SKTVIYVTHQVE 802
LR S T++ VTH ++
Sbjct: 227 ELRGSYTIMIVTHNMQ 242
|
Length = 286 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 5e-09
Identities = 53/193 (27%), Positives = 83/193 (43%), Gaps = 23/193 (11%)
Query: 632 NPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK--------- 682
L +I+ + G + G G GKS+LL + + SGTL G
Sbjct: 20 AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIY 79
Query: 683 ----AYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGER 738
+Y AQ+P + + DN++F + ++ D DLE F I +
Sbjct: 80 RQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPA----IFLDDLE--RFALPDTILTK 133
Query: 739 GIN-LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSK--TVI 795
I LSGG+KQRI + R L + L D+ SA+D H E++ +R + V+
Sbjct: 134 NIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESN-KHNVNEIIHRYVREQNIAVL 192
Query: 796 YVTHQVEFLPAAD 808
+VTH + + AD
Sbjct: 193 WVTHDKDEINHAD 205
|
Length = 225 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 6e-09
Identities = 46/164 (28%), Positives = 81/164 (49%), Gaps = 27/164 (16%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS 1130
L L G ++G +G GK+T ++ + + EPT+G I I G +++ + D R
Sbjct: 15 ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKD-RD 73
Query: 1131 RLSIIPQD----PTMFEGTVRNNLD-PLEEYK------DEEIWEALDKCQLGDEVRNKEG 1179
++++ Q+ P M TV +N+ L+ K DE + E + Q+ E
Sbjct: 74 -IAMVFQNYALYPHM---TVYDNIAFGLKLRKVPKDEIDERVREVAELLQI-------EH 122
Query: 1180 KLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVD 1223
LD + + S GQRQ V LGR ++++ KV ++DE +++D
Sbjct: 123 LLDRKPKQ----LSGGQRQRVALGRAIVREPKVFLMDEPLSNLD 162
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.1 bits (140), Expect = 6e-09
Identities = 52/215 (24%), Positives = 103/215 (47%), Gaps = 34/215 (15%)
Query: 613 SETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LG 667
++ I++ + N + L+++++++ A+ G G GKS+ + C+ L
Sbjct: 9 AQPQIKVENLNLWY---GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLI 65
Query: 668 EVPKISGTLKLCGTKAY---------------VAQSPWIQSGNIEDNILFGKPM---DRE 709
+ +I G + + G Y V Q P +I DN+ +G + +++
Sbjct: 66 KNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKK 125
Query: 710 KYDRVLEACSLKKDLEILSFGDQTV--IGERGINLSGGQKQRIQIARALYQDADIYLFDD 767
D V+E L + D+T + ++LSGGQ+QR+ IAR L I LFD+
Sbjct: 126 DLDGVVENA-----LRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDE 180
Query: 768 PFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVE 802
P SA+D + + + +++++ L + T++ VTH ++
Sbjct: 181 PTSALDPISTARI-EDLIMNLKKDYTIVIVTHNMQ 214
|
Length = 258 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 7e-09
Identities = 48/203 (23%), Positives = 84/203 (41%), Gaps = 25/203 (12%)
Query: 631 NNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPW 690
L DI+L V G G G+GK++ + ILG + SG + G
Sbjct: 12 KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEAL 71
Query: 691 IQSGNI------------EDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGER 738
+ G + +N+ + + R+ E L+++ D ++
Sbjct: 72 RRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEV------LDVVGLKD---SAKK 122
Query: 739 GI-NLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRS-KTVIY 796
+ S G KQR+ IA AL + D+ + D+P + +D G +E++L L TV+
Sbjct: 123 KVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDP-DGIKELRELILSLRDQGITVLI 181
Query: 797 VTHQV-EFLPAADLILVMKDGKI 818
+H + E AD I ++ GK+
Sbjct: 182 SSHLLSEIQKVADRIGIINKGKL 204
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 7e-09
Identities = 54/232 (23%), Positives = 92/232 (39%), Gaps = 54/232 (23%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK-------AYVA- 686
L D++ V G + G G+GK++L+ I G+ G + G +A
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIAR 80
Query: 687 -------QSPWI-QSGNIEDN-------------ILFGKPMDREKYDRVLEACSLKKDLE 725
Q P + ++ + +N LF + + E+ R+ E L
Sbjct: 81 AGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFAR-LRAEERRRIDEL------LA 133
Query: 726 ILSFGDQTVIGERGI---NLSGGQKQRIQIARALYQDADIYLFDDPFS----AVDAHTGS 778
+ GD ER LS GQKQ ++I L QD + L D+P + A T
Sbjct: 134 TIGLGD-----ERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTA- 187
Query: 779 HLFKEVLLGLLRSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDILN 829
E+L L +++ V H + F+ AD + V+ +G + G +++ N
Sbjct: 188 ----ELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQN 235
|
Length = 249 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 7e-09
Identities = 62/231 (26%), Positives = 103/231 (44%), Gaps = 49/231 (21%)
Query: 636 RDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL------------------- 676
RD++ ++ G + + G GSGK++LL CI G + +GT+
Sbjct: 23 RDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82
Query: 677 --KLCGTK-AYVAQSPW-------IQSGNIEDNILFGKPM---DREKYDRVLEACSLKKD 723
+L T+ +V Q+P GNI + + M R + EA ++
Sbjct: 83 RRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGE-----RLMAIGARHYGNIRAEAQDWLEE 137
Query: 724 LEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKE 783
+EI D I + SGG +QR+QIAR L + D+P +D + L +
Sbjct: 138 VEI----DLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLL-D 192
Query: 784 VLLGLLRSK--TVIYVTHQ---VEFLPAADLILVMKDGKITQAGKYNDILN 829
+L GL+R V+ VTH L AD ++VMK G++ ++G + +L+
Sbjct: 193 LLRGLVRELGLAVVIVTHDLAVARLL--ADRLMVMKQGQVVESGLTDRVLD 241
|
Length = 258 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (139), Expect = 8e-09
Identities = 55/225 (24%), Positives = 98/225 (43%), Gaps = 37/225 (16%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPW---- 690
L+DI +K+ + + G GSGKS+LL + + +K+ G Y + +
Sbjct: 26 LKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDA 85
Query: 691 ----------IQSGN------IEDNILFGKPM------DREKYDRVLEACSLKKDL--EI 726
Q N I DNI + P+ ++ + +++E C K L E+
Sbjct: 86 IKLRKEVGMVFQQPNPFPHLSIYDNIAY--PLKSHGIKEKREIKKIVEECLRKVGLWKEV 143
Query: 727 LSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLL 786
+ LSGGQ+QR+ IARAL + L D+P S +D S ++++
Sbjct: 144 -----YDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDI-VNSQAIEKLIT 197
Query: 787 GLLRSKTVIYVTHQVEFLP-AADLILVMKDGKITQAGKYNDILNS 830
L ++ V+H + + AD + + +G++ + G N+I S
Sbjct: 198 ELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTS 242
|
Length = 257 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (139), Expect = 8e-09
Identities = 57/225 (25%), Positives = 102/225 (45%), Gaps = 46/225 (20%)
Query: 631 NNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILG----------EVPKISGTLKLCG 680
+ L ++L + HG VA+ G GSGKS+LL + G + + T++ G
Sbjct: 16 QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREG 75
Query: 681 TKAYVAQSPWIQSG------------NIEDNILFG------------KPMDREKYDRVLE 716
A + +G ++ +N+L G RE+ R L+
Sbjct: 76 RLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQ 135
Query: 717 ACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHT 776
A + + ++ F Q V LSGGQ+QR+ IARAL Q A + L D+P +++D +
Sbjct: 136 ALT---RVGMVHFAHQRVS-----TLSGGQQQRVAIARALMQQAKVILADEPIASLDPES 187
Query: 777 GSHLFKEVLLGLLRSK--TVIYVTHQVEF-LPAADLILVMKDGKI 818
+ + + L + ++ TV+ HQV++ L + I+ ++ G +
Sbjct: 188 -ARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHV 231
|
Length = 262 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 60.0 bits (145), Expect = 8e-09
Identities = 54/199 (27%), Positives = 95/199 (47%), Gaps = 8/199 (4%)
Query: 1069 PLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDL 1128
P V R L TF T +G G+GK+T + L ++ PT+G +++ G +I + L +
Sbjct: 944 PAVDR-LNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAV 1001
Query: 1129 RSRLSIIPQDPTMFEG-TVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTE 1187
R L + PQ +F TV ++ + K WE + QL E ++ L + E
Sbjct: 1002 RQSLGMCPQHNILFHHLTVAEHILFYAQLKGRS-WE---EAQLEMEAMLEDTGLHHKRNE 1057
Query: 1188 NGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIA 1247
++ S G ++ + + + +KV+VLDE T+ VD + I L ++ S T+I
Sbjct: 1058 EAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMST 1117
Query: 1248 HRITSV-IDSDMVLLLSHG 1265
H + + D + ++S G
Sbjct: 1118 HHMDEADLLGDRIAIISQG 1136
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 9e-09
Identities = 33/93 (35%), Positives = 55/93 (59%), Gaps = 10/93 (10%)
Query: 741 NLSGGQKQRIQIARALYQDADIYLFDDPFSAVD-AHTGS--HLFKEV--LLGLLRSKTVI 795
LSGGQKQR+ IARAL + + L D+ SA+D A T S L K++ LGL T++
Sbjct: 140 QLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGL----TIV 195
Query: 796 YVTHQVEFLPA-ADLILVMKDGKITQAGKYNDI 827
+TH+++ + D + V+ G++ + G +++
Sbjct: 196 LITHEMDVVKRICDRVAVIDAGRLVEQGTVSEV 228
|
Length = 343 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 1e-08
Identities = 54/195 (27%), Positives = 85/195 (43%), Gaps = 25/195 (12%)
Query: 1072 LRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSR 1131
LR + T PGG +VG GSGKSTL + L V +G+I I G L+
Sbjct: 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQA----LQKN 78
Query: 1132 L-SIIPQD-------PTMFEGTVR----NNLDPLEEYKDEEIWEALDKCQLGDEVRNKEG 1179
L + +PQ P + E V ++ L K + Q+ +
Sbjct: 79 LVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDR-------QIVTAALARVD 131
Query: 1180 KLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS 1239
++ R + GE S GQ++ V L R + ++ +V++LDE VD T+ I LR+
Sbjct: 132 MVEFRHRQIGE-LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRD 190
Query: 1240 D-CTVITIAHRITSV 1253
+ T++ H + SV
Sbjct: 191 EGKTMLVSTHNLGSV 205
|
Length = 272 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 1e-08
Identities = 61/225 (27%), Positives = 103/225 (45%), Gaps = 26/225 (11%)
Query: 1059 NLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDG- 1117
+L+ Y P L+G+ G ++G G+GKSTL I++PT+GE++I G
Sbjct: 6 DLKYSY-PDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGE 64
Query: 1118 -INISSIGLHDLRSRLSIIPQDP--TMFEGTVRN-------NLDPLEEYKDEEIWEALDK 1167
I L ++R + I+ Q+P +F TV NL +E ++ + EAL
Sbjct: 65 PIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKA 124
Query: 1168 CQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATD 1227
+ L S GQ++ V + +L K +++VLDE T+ +D
Sbjct: 125 VGMEGFENKPPHHL-----------SGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGA 173
Query: 1228 NLIQQTLRQ-HFSDCTVITIAHRITSV-IDSDMVLLLSHG-IIEE 1269
+ I + L + T+I H + V + +D V ++S G II+E
Sbjct: 174 SQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKE 218
|
Length = 275 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 1e-08
Identities = 34/90 (37%), Positives = 54/90 (60%), Gaps = 15/90 (16%)
Query: 742 LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRS-----KTVIY 796
LSGGQ+QR+ IARAL + ++ LFD+P SA+D L EV L +++ +T++
Sbjct: 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALD----PELVGEV-LKVMQDLAEEGRTMVV 207
Query: 797 VTHQVEFLPAADL---ILVMKDGKITQAGK 823
VTH++ F A D+ ++ + GKI + G
Sbjct: 208 VTHEMGF--ARDVSSHVIFLHQGKIEEEGP 235
|
Length = 256 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 1e-08
Identities = 44/155 (28%), Positives = 71/155 (45%), Gaps = 25/155 (16%)
Query: 1084 KT-GIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINI---SSIGLHDLRSRLSIIPQDP 1139
KT +VG +G GKSTL + L I PT GE+ G ++ LR ++ I+ Q+P
Sbjct: 42 KTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNP 101
Query: 1140 TMFEGTVRNNLDP-------LEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENW 1192
+L+P LEE I +L + ++ K+ R E+ + +
Sbjct: 102 Y-------GSLNPRKKVGQILEE--PLLINTSLSAAERREKALAMMAKVGLR-PEHYDRY 151
Query: 1193 ----SMGQRQLVCLGRVLLKKSKVLVLDEATASVD 1223
S GQRQ + + R L+ V+V DE +++D
Sbjct: 152 PHMFSGGQRQRIAIARALMLDPDVVVADEPVSALD 186
|
Length = 327 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 1e-08
Identities = 36/138 (26%), Positives = 70/138 (50%), Gaps = 11/138 (7%)
Query: 1087 IVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTV 1146
++G GSGKSTL L + +P +GEI++DG +++ D R S + D +F+
Sbjct: 354 LIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQL- 412
Query: 1147 RNNLDPLEEYKDEEIWEA-LDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRV 1205
L P + + + E L++ ++ ++ ++G++ + S GQ++ + L
Sbjct: 413 ---LGPEGKPANPALVEKWLERLKMAHKLELEDGRISNL------KLSKGQKKRLALLLA 463
Query: 1206 LLKKSKVLVLDEATASVD 1223
L ++ +L+LDE A D
Sbjct: 464 LAEERDILLLDEWAADQD 481
|
Length = 547 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 1e-08
Identities = 48/157 (30%), Positives = 80/157 (50%), Gaps = 23/157 (14%)
Query: 1080 PGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHD---LRSRLSIIP 1136
PG M + G +G+GKSTL++ + I P+AG+I G +I+ + + LR ++ +I
Sbjct: 27 PGEMAF-LTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIF 85
Query: 1137 QD-PTMFEGTVRNNLD-PL------EEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTEN 1188
QD + + TV +N+ PL + + ALDK L D+ +N +L
Sbjct: 86 QDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQL------- 138
Query: 1189 GENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTA 1225
S G++Q V + R ++ K VL+ DE T ++D A
Sbjct: 139 ----SGGEQQRVGIARAVVNKPAVLLADEPTGNLDDA 171
|
Length = 222 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 1e-08
Identities = 65/238 (27%), Positives = 97/238 (40%), Gaps = 43/238 (18%)
Query: 637 DINLKVFHGMRVAVCGTVGSGKSSLLSCILG----EVPKISGTLKLCGTK---------- 682
D+NL + G +A+ G GSGKS ILG + + SG + L G
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRH 63
Query: 683 -AYVAQSPW--------IQSGNIEDNILFGKPMD--REKYDRVLEACSLKKDLEIL-SFG 730
A + Q+P + + IE GK R LEA L E+L +
Sbjct: 64 IATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYP 123
Query: 731 DQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLR 790
Q LSGG QR+ IA AL + + D+P + +D + + K LL LR
Sbjct: 124 FQ---------LSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLK--LLRELR 172
Query: 791 SK---TVIYVTHQVEFLP-AADLILVMKDGKITQAGKYNDILNSGTDFMV--LVGAHQ 842
++ +TH + + AD + VM DG+I + G +I + L+ AH
Sbjct: 173 QLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTRKLLSAHL 230
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 2e-08
Identities = 49/198 (24%), Positives = 87/198 (43%), Gaps = 27/198 (13%)
Query: 1080 PGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDP 1139
P G IVG TG GK++LI + + P + V+ +R ++ +PQ
Sbjct: 641 PVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVV------------IRGTVAYVPQVS 688
Query: 1140 TMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQL 1199
+F TVR+N+ + E A+D L ++ G + + E G N S GQ+Q
Sbjct: 689 WIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQR 748
Query: 1200 VCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDC--------TVITIAHRIT 1251
V + R + S V + D+ +++D RQ F C T + + +++
Sbjct: 749 VSMARAVYSNSDVYIFDDPLSALDA-------HVGRQVFDKCIKDELRGKTRVLVTNQLH 801
Query: 1252 SVIDSDMVLLLSHGIIEE 1269
+ D ++L+ G+I+E
Sbjct: 802 FLSQVDRIILVHEGMIKE 819
|
Length = 1622 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 2e-08
Identities = 59/257 (22%), Positives = 103/257 (40%), Gaps = 57/257 (22%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDL-- 1128
VL+G++ G IVG +GSGKSTL+ L + +PT+G + G +++++ L
Sbjct: 23 VLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQ 82
Query: 1129 --RSRLSIIPQD---------------PTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLG 1171
R I Q P ++ G R + E L + L
Sbjct: 83 LRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQ-------RLLRAQELLQRLGLE 135
Query: 1172 DEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQ 1231
D V + +L S GQ+Q V + R L+ +V++ DE T ++D+ + +
Sbjct: 136 DRVEYQPSQL-----------SGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVM 184
Query: 1232 QTLRQ-----HFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKL---------- 1276
L Q H TVI + H ++ V+ + G I + P +
Sbjct: 185 AILHQLRDRGH----TVIIVTHDPQVAAQAERVIEIRDGEIVR-NPPAQEKVNVAGGTEP 239
Query: 1277 LENKSSSFAQLVAEYTQ 1293
+ N +S + Q V+ + +
Sbjct: 240 VVNTASGWRQFVSGFRE 256
|
Length = 648 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 2e-08
Identities = 52/207 (25%), Positives = 101/207 (48%), Gaps = 29/207 (14%)
Query: 1072 LRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSR 1131
L+G+ T G ++G +G GKSTL+ + + +PT+G ++++G I+ G +
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRM--- 57
Query: 1132 LSIIPQDPTMFEG-TVRNNL---------DPLEEYKDEEIWEALDKCQLGDEVRNKEGKL 1181
++ Q+ ++ TVR N+ D + + + E + L + + G+L
Sbjct: 58 --VVFQNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQL 115
Query: 1182 DSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSD- 1240
S G +Q V + R L + KVL+LDE ++D T +Q+ L Q + +
Sbjct: 116 -----------SGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEH 164
Query: 1241 -CTVITIAHRI-TSVIDSDMVLLLSHG 1265
TV+ + H + +++ SD V++L++G
Sbjct: 165 RVTVLMVTHDVDEALLLSDRVVMLTNG 191
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 2e-08
Identities = 53/196 (27%), Positives = 82/196 (41%), Gaps = 41/196 (20%)
Query: 631 NNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK-------- 682
L IN+ + G V + G G+GKS+LL I E SGT+++ G
Sbjct: 13 GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRA 72
Query: 683 -AYVAQS--------PWIQSGNIEDNILF-----GKPMDREKYDRVLEACSLKKDLEILS 728
Y+ + + N+ +N+ F G P RE RV A LE++
Sbjct: 73 IPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVP-PREIRKRVPAA------LELVG 125
Query: 729 FGDQTVIGERGI--NLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGS---HLFKE 783
+ R + LSGG++QR+ IARA+ I + D+P +D T +L K+
Sbjct: 126 LSHK----HRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKK 181
Query: 784 VLLGLLRSKTVIYVTH 799
+ TV+ TH
Sbjct: 182 I---NKAGTTVVVATH 194
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 2e-08
Identities = 54/210 (25%), Positives = 93/210 (44%), Gaps = 34/210 (16%)
Query: 1078 TFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIP- 1136
T P T + G +GSGK++LI + + P G I ++G L D + + P
Sbjct: 20 TLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRV-----LVDAEKGIFLPPE 74
Query: 1137 --------QDPTMFEG-TVRNNLDPLEEYKDEEIWEALDKCQLGDEVR--NKEGKLDSRV 1185
QD +F TVR NL Y +W++ + Q V E LD
Sbjct: 75 KRRIGYVFQDARLFPHYTVRGNL----RYG---MWKS-MRAQFDQLVALLGIEHLLDRY- 125
Query: 1186 TENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTAT-DNLIQ--QTLRQHFSDCT 1242
S G++Q V +GR LL ++L++DE AS+D ++ + LR +
Sbjct: 126 ---PGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEI-NIP 181
Query: 1243 VITIAHRITSVID-SDMVLLLSHGIIEEYD 1271
++ ++H + V+ +D V++L +G ++
Sbjct: 182 ILYVSHSLDEVLRLADRVVVLENGKVKASG 211
|
Length = 352 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (135), Expect = 2e-08
Identities = 54/199 (27%), Positives = 94/199 (47%), Gaps = 35/199 (17%)
Query: 632 NPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LGEVPKISGTLKLCGTKAY-- 684
N ++D+++ A+ G G GKS++L I L +++G + L T Y
Sbjct: 17 NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDR 76
Query: 685 -------------VAQSP-WIQSGNIEDNILFGKPMD----REKYDRVLEACSLKKDLEI 726
V Q P + +I DN++ G ++ R + D ++E+ L+
Sbjct: 77 GVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESS-----LKR 131
Query: 727 LSFGDQTV--IGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEV 784
++ D+ + + LSGGQ+QR+ IAR + ++ L D+P SA+D S L E
Sbjct: 132 VALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPI--STLKIEE 189
Query: 785 LLGLLRSK-TVIYVTHQVE 802
L+ L+ K T+I VTH ++
Sbjct: 190 LIEELKEKYTIIIVTHNMQ 208
|
Length = 252 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (136), Expect = 2e-08
Identities = 58/247 (23%), Positives = 106/247 (42%), Gaps = 33/247 (13%)
Query: 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGT 675
AI++ + +F +D L ++++++ A+ G G GKS+ L C L + ++
Sbjct: 7 AIKVNNLSFYYDTQK---ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKC-LNRMNELESE 62
Query: 676 LKLCGTKAYVAQSPWIQSGNI-----EDNILFGKP--MDREKYDRVLEACSL---KKDLE 725
+++ G + Q+ + + N+ + +++ KP YD V + + LE
Sbjct: 63 VRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLE 122
Query: 726 ILSFGDQTV------------IGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVD 773
I + + I + ++LSGGQ+QR+ IARAL + L D+P +D
Sbjct: 123 IDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLD 182
Query: 774 AHTGSHLFKEVLLGLLRSK-TVIYVTH---QVEFLPAADLILVMKDGKITQA---GKYND 826
+ + LRS+ T++ V+H QV L + +I Q G
Sbjct: 183 PIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFGLTKK 242
Query: 827 ILNSGTD 833
I NS D
Sbjct: 243 IFNSPHD 249
|
Length = 261 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 58.4 bits (141), Expect = 2e-08
Identities = 115/572 (20%), Positives = 201/572 (35%), Gaps = 75/572 (13%)
Query: 293 ALFFSAWKEIVFTAI-LALLYTLANYVGPYLIDTFVQYLNGERE---FKNEGYVLVSTFF 348
AL S + I +I L L LA I+ + N + F G L++ F
Sbjct: 10 ALLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFLGQGSLFSFGGLCLLALLF 69
Query: 349 --VAKIVECLAQRHWMFRLQVAGIKMRSVLVSMVYNKGLTLSCQAKQSYTSGEIINFMTV 406
A I A H + L++A + K L + + +I +T
Sbjct: 70 RIGADIFPAYAGMHIIANLRIA-----------LCEKILGAPIEEIDRRGAHNLIPLLTH 118
Query: 407 DAERIGDFGWYMHDPWLVILQVSLALLILYKNLGLASIAALFATVLIMLTNFPLGRLQE- 465
D ++I F + P + L + + L + A + ++I L +
Sbjct: 119 DIDQINAFLFIF-PPIAIALAIFFFCIAYLAYLSVPMFAITISAIIIGTAAQLLAFMGGF 177
Query: 466 NFQDKLMGSKDKRMKVTSEILRNMRILKLQGWEMKFLS---------KIIELRKIEAGWL 516
F +D + T I + LK+ G + I +L IE
Sbjct: 178 KFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIF 237
Query: 517 KKFLYTGAMTSFVFWGAPTFVSVATFGACMLLGIPLESGKILSALATFRI-LQEPIYNLP 575
G + F+ + A F A M +SA + ++ P+ L
Sbjct: 238 IAAENFGQLLFFLL------IGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLV 288
Query: 576 DTISMIIQTKVSLDRIASFLCLDDLQSDVVEKHPRGSSETAIEIVDGNFAWDI------- 628
+ ++ Q +++ R+A F + + E S + ++ + + D
Sbjct: 289 SALPILAQAQIACQRLADF----GERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVH 344
Query: 629 -------SSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT 681
S L I+L++ G V + G G GKS+L G G + L G
Sbjct: 345 MNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDG- 403
Query: 682 KAYVAQSP----WIQSGNIEDNILF--------GKPMDREKYDRVLEACSLKKDLEILSF 729
A A S + S D LF G+ + + L+ + ++I
Sbjct: 404 AAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDG 463
Query: 730 GDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL 789
G T LS GQ++R+ + A +D I LFD+ + D ++E+L L
Sbjct: 464 GFSTTT-----ALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLK 518
Query: 790 R-SKTVIYVTHQVEFLPAADLILVMKDGKITQ 820
R KT+I ++H ++ AD I+ + G I +
Sbjct: 519 RQGKTIIIISHDDQYFELADQIIKLAAGCIVK 550
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 56.9 bits (137), Expect = 2e-08
Identities = 51/170 (30%), Positives = 78/170 (45%), Gaps = 12/170 (7%)
Query: 1070 LVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLR 1129
+V+ L+ T G G++G G+GKST+ + L ++ P G+I + G + S R
Sbjct: 18 VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPS-RARLAR 76
Query: 1130 SRLSIIPQ-DPTMFEGTVRNNLDPLEEY---KDEEIWEALDKCQLGDEVRNKEGKLDSRV 1185
+ ++PQ D E TVR NL Y EI + E E K D RV
Sbjct: 77 VAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLL---EFARLESKADVRV 133
Query: 1186 TENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLR 1235
S G ++ + L R L+ ++L+LDE T +D +LI + LR
Sbjct: 134 AL----LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLR 179
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 2e-08
Identities = 59/220 (26%), Positives = 102/220 (46%), Gaps = 55/220 (25%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT---KAYVAQSPWI 691
L I+L+V G V +CG G+GKS+L+ + G P GT + Y + SP +
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYP--------HGTWDGEIYWSGSP-L 67
Query: 692 QSGNIED-----------------------NILFGK----PMDREKYDR-VLEACSLKKD 723
++ NI D NI G P R Y+ L A +L ++
Sbjct: 68 KASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRE 127
Query: 724 LEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKE 783
L++ + +G+ G GGQ+Q ++IA+AL + A + + D+P S++ E
Sbjct: 128 LQLDADNVTRPVGDYG----GGQQQLVEIAKALNKQARLLILDEPSSSLTEKE-----TE 178
Query: 784 VLLGLLR-----SKTVIYVTHQVEFLPA-ADLILVMKDGK 817
+LL ++R +Y++H++ + A D I V++DG+
Sbjct: 179 ILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQ 218
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 2e-08
Identities = 62/247 (25%), Positives = 105/247 (42%), Gaps = 45/247 (18%)
Query: 628 ISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSC--ILGEVP----KISGTLKLCG- 680
+ + P + ++L + G +A+ G GSGKS L+C LG +P + +G + L G
Sbjct: 12 LQAAQPLVHGVSLTLQRGRVLALVGGSGSGKS--LTCAAALGILPAGVRQTAGRVLLDGK 69
Query: 681 ----------TKAYVAQSP--------WIQSGNIEDNILFGKPMDREKYDRVLEACSLKK 722
A + Q+P + + E + GKP D LEA L+
Sbjct: 70 PVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLEN 129
Query: 723 DLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFK 782
+L +SGG QR+ IA AL +A + D+P + +D + +
Sbjct: 130 AARVLKL--------YPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARIL- 180
Query: 783 EVLLGLLRSKT--VIYVTHQ---VEFLPAADLILVMKDGKITQAGKYNDILNSGTDFMV- 836
++L +++ + ++ VTH V L AD + VM G+I + G + N+ +
Sbjct: 181 DLLESIVQKRALGMLLVTHDMGVVARL--ADDVAVMSHGRIVEQGDVETLFNAPKHAVTR 238
Query: 837 -LVGAHQ 842
LV AH
Sbjct: 239 SLVSAHL 245
|
Length = 254 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 55.2 bits (134), Expect = 2e-08
Identities = 53/206 (25%), Positives = 83/206 (40%), Gaps = 52/206 (25%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK---ISGTLKLCGTKAYVAQSPWI 691
L+ +NL + G A+ G GSGKS+L I+G PK G + G
Sbjct: 16 LKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMG-HPKYEVTEGEILFKG----------- 63
Query: 692 QSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEI-LSFGDQTVIGERGINL-------- 742
++I P +R + L I L+F Q G+
Sbjct: 64 ------EDITDLPPEERAR-------------LGIFLAF--QYPPEIPGVKNADFLRYVN 102
Query: 743 ---SGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKT-VIYVT 798
SGG+K+R +I + L + D+ + D+P S +D L EV+ L V+ +T
Sbjct: 103 EGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDI-DALRLVAEVINKLREEGKSVLIIT 161
Query: 799 HQVEFL--PAADLILVMKDGKITQAG 822
H L D + V+ DG+I ++G
Sbjct: 162 HYQRLLDYIKPDRVHVLYDGRIVKSG 187
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 2e-08
Identities = 64/233 (27%), Positives = 93/233 (39%), Gaps = 37/233 (15%)
Query: 1057 ILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTL--FRIVEPTAGEIV 1114
I +L V +L+G+ T G I+G GSGKSTL T+ E T GEI+
Sbjct: 6 IKDLHVEVEGKKE-ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEIL 64
Query: 1115 IDGINISSIGLHDLRSRLSIIP--QDPTMFEGTVRNNLDPL-----EEYKDEEIWEALDK 1167
DG +I + + R+R I Q P G N D L I K
Sbjct: 65 FDGEDILELSPDE-RARAGIFLAFQYPVEIPGV--TNSDFLRAAMNARRGARGILPEFIK 121
Query: 1168 CQLGDEVRNKEGKLD------SRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATAS 1221
E++ K L R E +S G+++ + ++LL + K+ +LDE +
Sbjct: 122 -----ELKEKAELLGLDEEFLER--YVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSG 174
Query: 1222 VDTATDNLIQ-----QTLRQHFSDCTVITIAH--RITSVIDSDMVLLLSHGII 1267
+D D L LR+ V+ I H R+ I D V +L G I
Sbjct: 175 LD--IDALKIVAEGINALRE--EGRGVLIITHYQRLLDYIKPDKVHVLYDGRI 223
|
Length = 251 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 3e-08
Identities = 54/235 (22%), Positives = 99/235 (42%), Gaps = 38/235 (16%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDG------------- 1117
VL GL + G K ++G +GSGKST+++ L + G+I ++G
Sbjct: 15 VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPL 74
Query: 1118 INISSIGLHDLRSRLSIIPQDPTMF-EGTVRNNLD---------PLEEYKDEEIWEALDK 1167
+ L +R+++ ++ Q +F TV +N+ E + + E LD
Sbjct: 75 VPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAM-ELLDM 133
Query: 1168 CQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATD 1227
L D+ + +L S GQ+Q V + R L + KV++ DE T+++D
Sbjct: 134 VGLADKADHMPAQL-----------SGGQQQRVAIARALAMRPKVMLFDEVTSALDPELV 182
Query: 1228 NLIQQTLRQ--HFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLEN 1279
+ +R+ D T++ + H + + +D V G I E P ++
Sbjct: 183 GEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFRQ 237
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 3e-08
Identities = 60/224 (26%), Positives = 111/224 (49%), Gaps = 38/224 (16%)
Query: 1085 TGIVGRTGSGKSTLIQTLFRI--VEPTA---GEIVIDGINISSIGLH--DLRSRLSIIPQ 1137
T +G +G GKST+++TL R+ V P A GE+++DG ++ G+ +R + ++ Q
Sbjct: 33 TAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQ 92
Query: 1138 DPTMFEG-TVRNN------LDPLEEYK--DEEIWEALDKCQLGDEVRNKEGKLDSRVTEN 1188
P F ++R+N L+ + K DE + ++L L +EV++ R+ +
Sbjct: 93 RPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKD-------RLDKP 145
Query: 1189 GENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDT----ATDNLIQQTLRQHFSDCTVI 1244
G S GQ+Q +C+ R + + VL++DE +++D A ++LI + L+Q + T++
Sbjct: 146 GGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINE-LKQDY---TIV 201
Query: 1245 TIAHRI---TSVIDSDMVLLLSH----GIIEEYDSPTKLLENKS 1281
+ H + V D L G + E D K+ N +
Sbjct: 202 IVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTEKIFSNPT 245
|
Length = 258 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (135), Expect = 3e-08
Identities = 63/245 (25%), Positives = 106/245 (43%), Gaps = 41/245 (16%)
Query: 618 EIVDGNFAWDISSNNP----TLRDINLKVFHGMRVAVCGTVGSGKSSLLS---------- 663
+I+ N ++ + P L + +L V GT GSGKS+++
Sbjct: 6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISET 65
Query: 664 --CILGE------VPKISGTLKLCGTKAYVAQSPWIQ--SGNIEDNILFGKPMD-----R 708
I+G+ + KI +L V Q P Q IE +I FG P++ +
Sbjct: 66 GQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFG-PVNLGENKQ 124
Query: 709 EKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDP 768
E Y +V E L+++ + V LSGGQK+R+ +A + D + + D+P
Sbjct: 125 EAYKKVPEL------LKLVQLPEDYV-KRSPFELSGGQKRRVALAGIIAMDGNTLVLDEP 177
Query: 769 FSAVDAHTGSHLFKEVLLGLLRS--KTVIYVTHQV-EFLPAADLILVMKDGKITQAGKYN 825
+D G F + L + K +I VTH + + L AD ++VM +GK+ G
Sbjct: 178 TGGLDP-KGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPF 236
Query: 826 DILNS 830
+I ++
Sbjct: 237 EIFSN 241
|
Length = 289 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 3e-08
Identities = 57/236 (24%), Positives = 100/236 (42%), Gaps = 28/236 (11%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWI--- 691
+ +I+ +V G + G G+GK++ ILG + G + G I
Sbjct: 18 VDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYL 77
Query: 692 -------QSGNIEDNILFG---KPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGIN 741
+ED + + K M + + + L+A + LEI I E
Sbjct: 78 PEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQA--WLERLEI-VGKKTKKIKE---- 130
Query: 742 LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-RSKTVIYVTHQ 800
LS G +Q+IQ A+ + ++ + D+PFS +D L K+ + L T+I+ +H+
Sbjct: 131 LSKGNQQKIQFISAVIHEPELLILDEPFSGLDP-VNVELLKDAIFELKEEGATIIFSSHR 189
Query: 801 ---VEFLPAADLILVMKDGKITQAGKYNDILNSGTDFMVLVGAHQQALSALDSIEG 853
VE L D +L++K G+ G DI S +++ + +L L +I G
Sbjct: 190 MEHVEEL--CDRLLMLKKGQTVLYGTVEDIRRSFGKKRLVIES-DLSLEELANIPG 242
|
Length = 300 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 3e-08
Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 26/168 (15%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIG---LHD 1127
V++ ++ T G G+VG +GSGKST L R++ + GEI DG + ++ L
Sbjct: 301 VVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLNRRQLLP 359
Query: 1128 LRSRLSIIPQDPTMFEGTVRNNLDPLEE------------YKDEEIWEALDKCQLGDEVR 1175
+R R+ ++ QDP N L +EE +++++ +++ L E R
Sbjct: 360 VRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETR 419
Query: 1176 NKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVD 1223
++ E +S GQRQ + + R L+ K +++LDE T+S+D
Sbjct: 420 HR------YPAE----FSGGQRQRIAIARALILKPSLIILDEPTSSLD 457
|
Length = 529 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 4e-08
Identities = 50/215 (23%), Positives = 87/215 (40%), Gaps = 50/215 (23%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVA-----QSP 689
L D++L + G + + G G+GK++LL + G + G +++ G V Q P
Sbjct: 18 LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGED--VNRLRGRQLP 75
Query: 690 WIQSG--------------NIEDNILF-----GKPMD--REKYDRVLEACSL--KKDLEI 726
++ + +N+ GK + + L L K D
Sbjct: 76 LLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKAD--- 132
Query: 727 LSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGS---HLFKE 783
+F +Q LSGG++QR+ IARA+ + L D+P +D L K
Sbjct: 133 -AFPEQ---------LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKR 182
Query: 784 VLLGLLRSKTVIYVTHQVEFLPA-ADLILVMKDGK 817
+ R TVI TH + + A ++++ DG+
Sbjct: 183 L---NKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 4e-08
Identities = 51/185 (27%), Positives = 86/185 (46%), Gaps = 12/185 (6%)
Query: 1087 IVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTV 1146
++G GSGKSTL L + +P +GEI++DG +S+ L D R S + D +F+ +
Sbjct: 354 LIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL 413
Query: 1147 RNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVL 1206
+ ++ + + L E+ +K D R + S GQ++ + L L
Sbjct: 414 GPEGKASPQLIEKWL-QRL-------ELAHKTSLNDGRFSNL--KLSTGQKKRLALLLAL 463
Query: 1207 LKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDC--TVITIAHRITSVIDSDMVLLLSH 1264
L++ +LVLDE A D A Q L + T+ I+H I +D +L + +
Sbjct: 464 LEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRN 523
Query: 1265 GIIEE 1269
G + E
Sbjct: 524 GQLSE 528
|
Length = 546 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (134), Expect = 4e-08
Identities = 63/251 (25%), Positives = 111/251 (44%), Gaps = 38/251 (15%)
Query: 1053 GEVDILNLQVRYAPHLPLVLRGL---TCTFPGGMKTGIVGRTGSGKSTLIQ-TLFRIVEP 1108
++ + N+ YA P + L + TF T ++G TGSGKST+IQ T I+
Sbjct: 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE 64
Query: 1109 TAGEIVID---GINISSIG-LHDLRSRLSIIPQDP--TMFEGTVRNNL---------DPL 1153
T IV D N+ I + LR + ++ Q P +F+ T+ ++ +
Sbjct: 65 TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQ 124
Query: 1154 EEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVL 1213
E YK ++ E L QL ++ V + S GQ++ V L ++ L
Sbjct: 125 EAYK--KVPELLKLVQLPEDY----------VKRSPFELSGGQKRRVALAGIIAMDGNTL 172
Query: 1214 VLDEATASVDTATD----NLIQQTLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGIIE 1268
VLDE T +D + NL ++ +++ +I + H + V+ +D V+++ G +
Sbjct: 173 VLDEPTGGLDPKGEEDFINLFERLNKEYKK--RIIMVTHNMDQVLRIADEVIVMHEGKVI 230
Query: 1269 EYDSPTKLLEN 1279
SP ++ N
Sbjct: 231 SIGSPFEIFSN 241
|
Length = 289 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (134), Expect = 4e-08
Identities = 45/199 (22%), Positives = 91/199 (45%), Gaps = 31/199 (15%)
Query: 1072 LRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPT-----AGEIVIDGINISSIGLH 1126
++ + G ++G +G GK+T ++ + R+ + T G I++DG +I +
Sbjct: 20 VKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVD 79
Query: 1127 D--LRSRLSIIPQDP------TMFEGTVR-------NNLDPLEEYKDEEIWEALDKCQLG 1171
+R R+ ++ Q P ++F+ V + D L E + +L L
Sbjct: 80 PVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAER----SLRGAALW 135
Query: 1172 DEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQ 1231
DEV++ R+ S GQ+Q +C+ R L + ++L++DE T+++D A+ I+
Sbjct: 136 DEVKD-------RLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIE 188
Query: 1232 QTLRQHFSDCTVITIAHRI 1250
+ T+I + H +
Sbjct: 189 DLMTDLKKVTTIIIVTHNM 207
|
Length = 252 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 5e-08
Identities = 58/221 (26%), Positives = 108/221 (48%), Gaps = 19/221 (8%)
Query: 633 PTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKL--CGTKAY------ 684
P L ++ ++ +V + G G+GKSS+L+ + V G + + C +
Sbjct: 1253 PVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLR 1312
Query: 685 -----VAQSPWIQSGNIEDNI-LFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGER 738
+ Q+P + SG + N+ F + D + ++ LE LK + S G + E
Sbjct: 1313 KVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWE-SLERAHLKDVIRRNSLGLDAEVSEA 1371
Query: 739 GINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVT 798
G N S GQ+Q + +ARAL + + I + D+ +AVD T + L ++ + +S T++ +
Sbjct: 1372 GENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDA-LIQKTIREEFKSCTMLIIA 1430
Query: 799 HQVEFLPAADLILVMKDGKITQAGKYNDIL-NSGTDF--MV 836
H++ + D ILV+ G++ + ++L N G+ F MV
Sbjct: 1431 HRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMV 1471
|
Length = 1622 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 5e-08
Identities = 52/232 (22%), Positives = 87/232 (37%), Gaps = 43/232 (18%)
Query: 633 PTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT----------- 681
P L +++L + G V + G G GKS+L +LG GT+ G
Sbjct: 25 PVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRR 84
Query: 682 -----------KAYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFG 730
+ A +P + I G+P+ + E+ + E+L
Sbjct: 85 AFRRDVQLVFQDSPSAVNPRMTVRQI-----IGEPL--RHLTSLDESEQKARIAELLDMV 137
Query: 731 D--QTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL 788
+ LSGGQ QRI IARAL + + D+ S +D + V+L L
Sbjct: 138 GLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMV-----LQAVILEL 192
Query: 789 LRS------KTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDILNSGTD 833
LR +++TH + + + + VM G+I + +L+
Sbjct: 193 LRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLSFKHP 244
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 56.1 bits (135), Expect = 5e-08
Identities = 67/252 (26%), Positives = 116/252 (46%), Gaps = 38/252 (15%)
Query: 637 DINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG----TKAYVAQS---- 688
D++ + G + G G+GKS++ +LG + G + + G ++A +A+
Sbjct: 22 DLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGV 81
Query: 689 -PWIQSGNIE----DNIL-FGKPMDREKYDRVLEAC--SLKKDLEILSFGDQTVIGERGI 740
P + + E +N+L FG+ R +EA SL + + S D V
Sbjct: 82 VPQFDNLDPEFTVRENLLVFGRYFGMST--REIEAVIPSLLEFARLESKADVRVA----- 134
Query: 741 NLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-RSKTVIYVTH 799
LSGG K+R+ +ARAL D + + D+P + +D H HL E L LL R KT++ TH
Sbjct: 135 LLSGGMKRRLTLARALINDPQLLILDEPTTGLDPH-ARHLIWERLRSLLARGKTILLTTH 193
Query: 800 QVEFLPAA----DLILVMKDGKITQAGKYNDILNS--GTDFMVLVGAHQQALSALDSIEG 853
F+ A D + V++ G+ G+ + +++ G + + + G L L
Sbjct: 194 ---FMEEAERLCDRLCVLESGRKIAEGRPHALIDEQIGCNVIEIYGGDPDELRELI---- 246
Query: 854 GPVSERISMNKE 865
P + RI ++ E
Sbjct: 247 RPYARRIEVSGE 258
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 6e-08
Identities = 52/240 (21%), Positives = 96/240 (40%), Gaps = 33/240 (13%)
Query: 633 PTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-----TKAYVAQ 687
+ +N KV G G G+GK++ + + + SGT ++ G V +
Sbjct: 7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRR 66
Query: 688 SPWI--QSGNIEDNI-----------LFGKPMD--REKYDRVLEACSLKKDLEILSFGDQ 732
S I Q ++++++ L+G P D E+ + +LE L + D+
Sbjct: 67 SIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGE------AADR 120
Query: 733 TVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSK 792
V SGG ++R+ IA +L D+ D+P + +D T ++ +
Sbjct: 121 PVGT-----YSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGV 175
Query: 793 TVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDILNS-GTDFMVLVGAHQQALSALDS 850
T++ TH +E D I ++ G+I G ++ G D + Q+L S
Sbjct: 176 TILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLGKDTLESRPRDIQSLKVEVS 235
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 6e-08
Identities = 63/225 (28%), Positives = 98/225 (43%), Gaps = 49/225 (21%)
Query: 629 SSNNPTLRDINLKVFHGMRVAVCGTVGSGKS-------SLLSCILGEV-------PKISG 674
S+ L D+NL+V G + + G GSGKS +LL G+V
Sbjct: 20 STEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEEN 79
Query: 675 TLKLCGTKAYVAQSP--WIQSGNIEDNILFG------KPMD-REKYDRVLEACSL---KK 722
+ V Q+P I + +E+++ FG P + RE+ D L+ + ++
Sbjct: 80 LWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRR 139
Query: 723 DLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFK 782
L LSGGQKQR+ IA L + +FD+P + +D +G +
Sbjct: 140 HAPHL--------------LSGGQKQRVAIAGILAMRPECIIFDEPTAMLDP-SGR---R 181
Query: 783 EVLLGL--LRSK---TVIYVTHQVEFLPAADLILVMKDGKITQAG 822
EV+ + L K T+I +TH +E AD I+VM GK+ G
Sbjct: 182 EVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEG 226
|
Length = 280 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 6e-08
Identities = 50/219 (22%), Positives = 95/219 (43%), Gaps = 34/219 (15%)
Query: 629 SSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQS 688
S P++RD++ + G + + G VG+ ++ ++ + G K +GT+ L G K +
Sbjct: 258 SLRQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHG-KKINNHN 316
Query: 689 PW--IQSG-----------------NIEDNILFGKPMDREKYD-RVLEACSLKKD----- 723
I G +I N L + K +L+ +K D
Sbjct: 317 ANEAINHGFALVTEERRSTGIYAYLDIGFNSLISN-IRNYKNKVGLLDNSRMKSDTQWVI 375
Query: 724 --LEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLF 781
+ + + G +T IG +LSGG +Q++ I R L +I + D+P +D ++
Sbjct: 376 DSMRVKTPGHRTQIG----SLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIY 431
Query: 782 KEVLLGLLRSKTVIYVTHQV-EFLPAADLILVMKDGKIT 819
+ + + K +I ++ ++ E L D ILVM +G +
Sbjct: 432 QLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVA 470
|
Length = 491 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 7e-08
Identities = 46/211 (21%), Positives = 88/211 (41%), Gaps = 35/211 (16%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKA----------- 683
+R ++ +V G + G G+GK++ + + + SG + G
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRI 75
Query: 684 -YVAQSPWIQSG-NIEDNI-----LFGKPMD--REKYDRVLEACSLKKDLEILSFGDQTV 734
V Q + +N+ L+G P RE+ D +L+ + +L D+ V
Sbjct: 76 GIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDF------VGLLEAADRLV 129
Query: 735 IGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSK-- 792
SGG ++R++IAR+L ++ D+P +D T +H++ E + L
Sbjct: 130 K-----TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVW-EYIEKLKEEFGM 183
Query: 793 TVIYVTHQVEFLPA-ADLILVMKDGKITQAG 822
T++ TH +E D + ++ G+I G
Sbjct: 184 TILLTTHYMEEAEQLCDRVAIIDHGRIIAEG 214
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 7e-08
Identities = 58/212 (27%), Positives = 107/212 (50%), Gaps = 27/212 (12%)
Query: 1086 GIVGRTGSGKSTLIQTLFRIVEPTAGEIVI----DGINISSIGLHDLRSR----LSIIPQ 1137
GIVG +G+GK+TL + + ++EPT+GE+ + + ++++ G D R R + I+ Q
Sbjct: 314 GIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGP-DGRGRAKRYIGILHQ 372
Query: 1138 DPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQ-------LGDEVRNKEGKLDSRVTENGE 1190
+ ++ R LD L E E+ + L + + +G + E LD E
Sbjct: 373 EYDLY--PHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDE--- 427
Query: 1191 NWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTL---RQHFSDCTVITIA 1247
S G+R V L +VL+K+ ++++LDE T ++D T + ++ R+ T I ++
Sbjct: 428 -LSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQ-TFIIVS 485
Query: 1248 HRITSVID-SDMVLLLSHGIIEEYDSPTKLLE 1278
H + V+D D L+ G I + P +++E
Sbjct: 486 HDMDFVLDVCDRAALMRDGKIVKIGDPEEIVE 517
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 8e-08
Identities = 55/194 (28%), Positives = 91/194 (46%), Gaps = 26/194 (13%)
Query: 632 NPTLRDINLKVFHGMRVAVCGTVGSGKSSL---LSCILGEVP--KISGTL---------- 676
+ L++INL + A+ G G GKS+ L+ ++ VP K +G +
Sbjct: 37 DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDK 96
Query: 677 -----KLCGTKAYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGD 731
+L V Q P +I DN+ +G + K + L+ ++K L + D
Sbjct: 97 SYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEI-VEKSLRGAAIWD 155
Query: 732 QTV--IGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL 789
+ + + LSGGQ+QR+ IAR L + D+ L D+P SA+D S L E L+ L
Sbjct: 156 ELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPI--STLKVEELVQEL 213
Query: 790 RSK-TVIYVTHQVE 802
+ ++I VTH ++
Sbjct: 214 KKDYSIIIVTHNMQ 227
|
Length = 271 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 8e-08
Identities = 51/195 (26%), Positives = 81/195 (41%), Gaps = 43/195 (22%)
Query: 633 PTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG---TKAYVAQSP 689
LRD++ + G V + G G+GKS+LL I GE G + + G ++ + P
Sbjct: 16 EALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIP 75
Query: 690 W--------------IQSGNIEDNILF-----GKPMD--REKYDRVLEACSLKKDLEILS 728
+ + + +N+ GKP R + VL+ LK + +
Sbjct: 76 FLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKH--KARA 133
Query: 729 FGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGS---HLFKEV- 784
Q LSGG++QR+ IARA+ + L D+P +D LF+E+
Sbjct: 134 LPSQ---------LSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN 184
Query: 785 LLGLLRSKTVIYVTH 799
LG TV+ TH
Sbjct: 185 RLGT----TVLMATH 195
|
Length = 223 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 8e-08
Identities = 63/215 (29%), Positives = 93/215 (43%), Gaps = 37/215 (17%)
Query: 612 SSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCI------ 665
++ + I++ + NF + L++INL + A G G GKS+LL
Sbjct: 9 TAPSKIQVRNLNFYYG---KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYEL 65
Query: 666 ------LGEV---------PKISGTLKLCGTKAYVAQSPWIQSGNIEDNILFG-----KP 705
GE+ PK L L V Q P +I DNI FG K
Sbjct: 66 YPEQRAEGEILLDGENILTPKQDIAL-LRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKL 124
Query: 706 MDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLF 765
E +RV A L K D+ + + G +LSGGQ+QR+ IAR + ++ L
Sbjct: 125 SRAEMDERVEWA--LTKAALWNEVKDK--LHQSGYSLSGGQQQRLCIARGIAIRPEVLLL 180
Query: 766 DDPFSAVDAHTGSHLFKEVLLGLLRSK-TVIYVTH 799
D+P SA+D + + E L+ L+ TV+ VTH
Sbjct: 181 DEPCSALDPISTGRI--EELITELKQDYTVVIVTH 213
|
Length = 260 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (131), Expect = 8e-08
Identities = 53/194 (27%), Positives = 91/194 (46%), Gaps = 33/194 (17%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LGEVPKISGTLKLCGTKAY----- 684
++++NL V G A+ G G GK++ L I L +++G + L G Y
Sbjct: 20 VKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVD 79
Query: 685 ----------VAQSP-WIQSGNIEDNILFGKPM----DREKYDRVLEACSLKKDLEILSF 729
V Q P + ++ DN++ G + DR+ V E + L +
Sbjct: 80 PVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAE-----RSLRGAAL 134
Query: 730 GDQTV--IGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLG 787
D+ + LSGGQ+QR+ IARAL + +I L D+P SA+D + + + ++++
Sbjct: 135 WDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARI-EDLMTD 193
Query: 788 LLRSKTVIYVTHQV 801
L + T+I VTH +
Sbjct: 194 LKKVTTIIIVTHNM 207
|
Length = 252 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 8e-08
Identities = 56/218 (25%), Positives = 95/218 (43%), Gaps = 39/218 (17%)
Query: 633 PTLR-DINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSP-- 689
P LR I+ V G V + G VG+G+S L+ + G + +G + L G K +SP
Sbjct: 266 PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDG-KPIDIRSPRD 324
Query: 690 WIQSG-----------------NIEDNI---------LFGKPMDREKYDRVLEACSLKKD 723
I++G ++ DNI G ++ A +
Sbjct: 325 AIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAE--NADRFIRS 382
Query: 724 LEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKE 783
L I + + +I NLSGG +Q+ + R L +D + L D+P +D ++
Sbjct: 383 LNIKTPSREQLIM----NLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIY-N 437
Query: 784 VLLGLL-RSKTVIYVTHQV-EFLPAADLILVMKDGKIT 819
V+ L + V++V+ + E L AD I+VM++G+I
Sbjct: 438 VIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIA 475
|
Length = 501 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 8e-08
Identities = 69/274 (25%), Positives = 120/274 (43%), Gaps = 62/274 (22%)
Query: 645 GMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGNI-EDNILFG 703
G +AV G GSGKS+LL+ + G + + T + + ++G + +D+IL+
Sbjct: 94 GEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYP 153
Query: 704 KPMDRE---------------KYDRVLEACSLKKDLEILSFGDQTVIGE---RGINLSGG 745
RE K +++L A S+ +L L+ + T+IG RGI SGG
Sbjct: 154 HLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELG-LTKCENTIIGNSFIRGI--SGG 210
Query: 746 QKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-RSKTVIYVTHQVEFL 804
+++R+ IA + + + + D+P S +DA T ++ L L + KT++ HQ
Sbjct: 211 ERKRVSIAHEMLINPSLLILDEPTSGLDA-TAAYRLVLTLGSLAQKGKTIVTSMHQ---- 265
Query: 805 PAA------DLILVMKDGKITQAGKYNDILNSGTDFMVLVGAHQQALSALDSIEGGPVSE 858
P++ D +LV+ +G+ + G A++ +S+ S
Sbjct: 266 PSSRVYQMFDSVLVLSEGRC-----------------LFFGKGSDAMAYFESVG---FSP 305
Query: 859 RISMNKENGGMDTTNGVTMKEGNEDIQTDKVDEQ 892
MN + +D NGV QTD V E+
Sbjct: 306 SFPMNPADFLLDLANGVC--------QTDGVSER 331
|
Length = 659 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 9e-08
Identities = 47/210 (22%), Positives = 83/210 (39%), Gaps = 40/210 (19%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------KAYVAQS 688
D++ + G + + G G+GK++LL + G + +G + G ++Y
Sbjct: 18 FSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQAL 77
Query: 689 PWI--QSG-----NIEDNILFGKPM----DREKYDRVLEACSLKKDLEILSFGDQTVIGE 737
++ Q G +N+ F + + L L LE L G
Sbjct: 78 LYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLA-GLEDLPVG------- 129
Query: 738 RGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKT---- 793
LS GQ++R+ +AR A +++ D+PF+A+D +L L+ +
Sbjct: 130 ---QLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEG-----VALLTALMAAHAAQGG 181
Query: 794 -VIYVTHQVEFLPAADLILVMKDGKITQAG 822
V+ THQ LP A + D T+A
Sbjct: 182 IVLLTTHQP--LPIASAQIRRLDLTATKAT 209
|
Length = 209 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.2 bits (134), Expect = 1e-07
Identities = 50/246 (20%), Positives = 97/246 (39%), Gaps = 38/246 (15%)
Query: 604 VVEKHPRGSSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLS 663
V K P E +E+ D + ++D++ +V G V + G G+G+S L+
Sbjct: 245 RVVKPPSTPGEVVLEVED--LSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVE 302
Query: 664 CILGEVPKISGTLKLCGTKAYVAQSP--WIQSG-----------------NIEDNILFG- 703
I G SG + L G SP + G ++ +N++ G
Sbjct: 303 AISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGR 362
Query: 704 ---KPM------DREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIAR 754
KP DR + L ++ ++ + +LSGG +Q++ +AR
Sbjct: 363 HDKKPFSRGGFLDRRAIRKFAR--ELIEEFDVRAPSPDAPAR----SLSGGNQQKLILAR 416
Query: 755 ALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPA-ADLILVM 813
L + D+ + P +D + + +L K V+ ++ ++ + +D I V+
Sbjct: 417 ELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVI 476
Query: 814 KDGKIT 819
+G+I
Sbjct: 477 YEGRIV 482
|
Length = 501 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (130), Expect = 1e-07
Identities = 53/209 (25%), Positives = 93/209 (44%), Gaps = 29/209 (13%)
Query: 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LGEVPK 671
IE+ + N +D + L+++NL + A+ G G GKS+ + + L +
Sbjct: 4 IEVENLNTYFD---DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFR 60
Query: 672 ISGTLKLCGTKAY---------------VAQSPWIQSGNIEDNILFGKPMDREKYDRVLE 716
G + L G Y V Q P +I DN+ +G + E D
Sbjct: 61 HEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGED-DEDFI 119
Query: 717 ACSLKKDLEILSFGDQT--VIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDA 774
+++ L+ + D+ + + + LSGGQ+QR+ IAR + ++ L D+P SA+D
Sbjct: 120 EERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDP 179
Query: 775 HTGSHLFKEVLLGLLRSK-TVIYVTHQVE 802
S E L+ L+ T++ VTH ++
Sbjct: 180 I--STTKIEDLIHKLKEDYTIVIVTHNMQ 206
|
Length = 250 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 1e-07
Identities = 56/234 (23%), Positives = 105/234 (44%), Gaps = 31/234 (13%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHD--- 1127
L ++ TF I+G +GSGKSTL+ +++ G I + I I +
Sbjct: 41 ALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100
Query: 1128 -------------LRSRLSIIPQDP--TMFEGTVRNNLD----PLEEYKDEEIWEALDKC 1168
LR R+S++ Q P +F+ T+ ++ L K E
Sbjct: 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSE-------AK 153
Query: 1169 QLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDN 1228
+L NK G DS + + S GQ++ V + +L + ++L+ DE TA +D ++
Sbjct: 154 KLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEH 213
Query: 1229 -LIQQTLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENK 1280
++Q L ++ TV I H + V++ +D V+++ G I + +P ++ ++
Sbjct: 214 EMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQ 267
|
Length = 320 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 1e-07
Identities = 53/225 (23%), Positives = 99/225 (44%), Gaps = 31/225 (13%)
Query: 1040 IEESRPDCSWPTHGEVDILNLQVRYAPHLPLV-------LRGLTCTFPGGMKTGIVGRTG 1092
E R P G V+ + +++ ++PLV + L+ P G I G G
Sbjct: 430 REGGRNSNLVPGRGIVEYQDNGIKFE-NIPLVTPNGDVLIESLSFEVPSGNNLLICGPNG 488
Query: 1093 SGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNL-- 1150
GKS+L + L + G + + +L +PQ P M GT+R+ +
Sbjct: 489 CGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIY 537
Query: 1151 -DPLEEYK-----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGR 1204
D E+ K D+++ + LD QL + +EG + V + + S G++Q + + R
Sbjct: 538 PDSSEDMKRRGLSDKDLEQILDNVQLTHILE-REGGWSA-VQDWMDVLSGGEKQRIAMAR 595
Query: 1205 VLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHR 1249
+ K + +LDE T++V + + + R+ T+ +++HR
Sbjct: 596 LFYHKPQFAILDECTSAVSVDVEGYMYRLCREF--GITLFSVSHR 638
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 1e-07
Identities = 30/79 (37%), Positives = 52/79 (65%), Gaps = 5/79 (6%)
Query: 742 LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRS--KTVIYVTH 799
LS GQ+Q ++IA+AL ++A + FD+P S++ A LF+ ++ LR+ + ++YV+H
Sbjct: 141 LSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFR--VIRELRAEGRVILYVSH 198
Query: 800 QVEFLPA-ADLILVMKDGK 817
++E + A D I V KDG+
Sbjct: 199 RMEEIFALCDAITVFKDGR 217
|
Length = 501 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 1e-07
Identities = 55/216 (25%), Positives = 96/216 (44%), Gaps = 49/216 (22%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT---KAYVAQSPWI 691
L +++LKV G V++CG G+GKS+L+ + G P GT + +
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYP--------HGTYEGEIIFEGEE-L 71
Query: 692 QSGNIED-----------------------NILFGK---PMDREKYDRV-LEACSLKKDL 724
Q+ NI D NI G P YD + L A L L
Sbjct: 72 QASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQL 131
Query: 725 EILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEV 784
++ D NL GQ+Q ++IA+AL + A + + D+P +++ + L
Sbjct: 132 KL----DINP-ATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLD-- 184
Query: 785 LLGLLRSKTV--IYVTHQVEFLPA-ADLILVMKDGK 817
++ L++ + IY++H++ + A +D I V++DG+
Sbjct: 185 IIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGR 220
|
Length = 506 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 1e-07
Identities = 59/240 (24%), Positives = 107/240 (44%), Gaps = 57/240 (23%)
Query: 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGT 675
A+E+ + +D N P +++NL + G R+A+ G G GK++LL ++GE+ SGT
Sbjct: 319 ALEVENLTKGFD---NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGT 375
Query: 676 LKLCGTKAYVAQSPWIQSGNI------------EDNILF------GKPMDREKYDRVLEA 717
+K W ++ NI D LF + D E+
Sbjct: 376 VK------------WSENANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQ------- 416
Query: 718 CSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTG 777
+++ L L F Q I + LSGG+K R+ + + Q ++ + D+P
Sbjct: 417 -AVRGTLGRLLFS-QDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEP--------T 466
Query: 778 SHLFKEVL----LGLLRSK-TVIYVTHQVEFLPA-ADLILVMKDGKITQ-AGKYNDILNS 830
+H+ E + + L + + T+I+V+H EF+ + A I+ + + +G Y + L S
Sbjct: 467 NHMDMESIESLNMALEKYEGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526
|
Length = 530 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 1e-07
Identities = 42/201 (20%), Positives = 85/201 (42%), Gaps = 39/201 (19%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVI----DGINISSIGLH 1126
VL+ ++ T G + G +G+GKSTL+++L+ P +G I++ ++++
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPR 82
Query: 1127 D---LRSR--------LSIIPQDPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVR 1175
+ +R + L +IP+ L+ + E E + R
Sbjct: 83 EVLEVRRKTIGYVSQFLRVIPRVSA---------LEVVAEPLLERGVPR-------EAAR 126
Query: 1176 NKEGKLDSRVTENGENWSM-------GQRQLVCLGRVLLKKSKVLVLDEATASVDTATDN 1228
+ +L +R+ W + G++Q V + R + +L+LDE TAS+D A
Sbjct: 127 ARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQ 186
Query: 1229 LIQQTLRQ-HFSDCTVITIAH 1248
++ + + + +I I H
Sbjct: 187 VVVELIAEAKARGAALIGIFH 207
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 2e-07
Identities = 50/236 (21%), Positives = 93/236 (39%), Gaps = 44/236 (18%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS 1130
L ++ T G ++G +G GK+TL+ + V P+ G I ++G I G +
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPG-----A 74
Query: 1131 RLSIIPQDPTMFEG-TVRNN---------LDPLEEYKDEEIWEALDKCQLGDEVRNKEGK 1180
++ Q+ + V +N ++ + + E + L L +
Sbjct: 75 ERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQ--RREIAHQMLALVGLEGAEHKYIWQ 132
Query: 1181 LDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTL-----R 1235
L S G RQ V + R L + ++L+LDE ++D T +Q+ L
Sbjct: 133 L-----------SGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQE 181
Query: 1236 QHFSDCTVITIAHRI-TSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLVAE 1290
V+ I H I ++ + +++LS G P +++E FA+ A
Sbjct: 182 TGKQ---VLLITHDIEEALFLATRLVVLSPG-------PGRVVERLPLDFARRYAA 227
|
Length = 259 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 2e-07
Identities = 58/222 (26%), Positives = 96/222 (43%), Gaps = 53/222 (23%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGT---------------LKLC 679
L+ IN+ + G A+ G G+GKS+L + G + SG +KL
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLR 81
Query: 680 GTKAYVAQSPWIQ--SGNIEDNILFGK-----PMD--REKYDRVLEACSLK----KDLEI 726
+ V Q P Q S ++ ++ FG P D R++ D L+ ++ K
Sbjct: 82 ESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHC 141
Query: 727 LSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL- 785
LSFG QK+R+ IA L + + + D+P + +D S + K ++
Sbjct: 142 LSFG---------------QKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVE 186
Query: 786 ----LGLLRSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAG 822
LGL T+I TH ++ +P D + VMK+G++ G
Sbjct: 187 MQKELGL----TIIIATHDIDIVPLYCDNVFVMKEGRVILQG 224
|
Length = 283 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 2e-07
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 18/98 (18%)
Query: 743 SGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEV---LLGLLRSK------T 793
SGGQ+QRI IARAL ++ L D+P SA+D + V +L LLR +
Sbjct: 428 SGGQRQRIAIARALILKPELILLDEPTSALD--------RSVQAQVLDLLRDLQQKHGLS 479
Query: 794 VIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDILNS 830
++++H + + A ++VM+DGKI + G + +
Sbjct: 480 YLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFAN 517
|
Length = 534 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 2e-07
Identities = 50/176 (28%), Positives = 83/176 (47%), Gaps = 36/176 (20%)
Query: 1070 LVLRGLTCTFPG-------------GMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVID 1116
L +R LT +F G G ++G +G GKSTL++ L +PTAG+I++D
Sbjct: 20 LEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLD 79
Query: 1117 GINISSIGLHDLRSRLSIIPQDPTMF-EGTVRNNLD--------PLEEYKDEEIWEALDK 1167
G+++S + + + ++++ Q +F TV N+ P E + E L
Sbjct: 80 GVDLSHVPPY--QRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIAS-RVNEMLGL 136
Query: 1168 CQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVD 1223
+ + + K +L S GQRQ V L R L K+ K+L+LDE ++D
Sbjct: 137 VHMQEFAKRKPHQL-----------SGGQRQRVALARSLAKRPKLLLLDEPMGALD 181
|
Length = 377 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 52.5 bits (127), Expect = 2e-07
Identities = 51/207 (24%), Positives = 88/207 (42%), Gaps = 43/207 (20%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTL--FRIVEPTAGEIVIDGINISSIGLHDL 1128
+L+G+ T G ++G GSGKSTL +T+ E T GEI+ G +I+ + +
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEE- 73
Query: 1129 RSRLSII--PQDPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVT 1186
R+RL I Q P G V+N D +R
Sbjct: 74 RARLGIFLAFQYPPEIPG-VKNA----------------------DFLRYV--------- 101
Query: 1187 ENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQ-HFSDCTVIT 1245
E +S G+++ + ++LL + + +LDE + +D L+ + + + +V+
Sbjct: 102 --NEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLI 159
Query: 1246 IAH--RITSVIDSDMVLLLSHG-IIEE 1269
I H R+ I D V +L G I++
Sbjct: 160 ITHYQRLLDYIKPDRVHVLYDGRIVKS 186
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 2e-07
Identities = 63/227 (27%), Positives = 109/227 (48%), Gaps = 44/227 (19%)
Query: 1070 LVLRGLTCTFPG-------------GMKTGIVGRTGSGKSTLIQTLFRIVEPTA---GEI 1113
L ++ +T TF G G + G G+GKSTL++ L V P GEI
Sbjct: 6 LEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSG-VYPHGTYEGEI 64
Query: 1114 VIDGINISSIGLHDL-RSRLSIIPQDPTMFEG-TVRNNLDPLEEYKDEEI-------WEA 1164
+ +G + + + D R+ ++II Q+ + + +V N+ + EI ++A
Sbjct: 65 IFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENI-----FLGNEITPGGIMDYDA 119
Query: 1165 L-DKCQ-LGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASV 1222
+ + Q L ++ KLD N +GQ+QLV + + L K++++L+LDE TAS+
Sbjct: 120 MYLRAQKLLAQL-----KLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASL 174
Query: 1223 ---DTATDNLIQQTLRQHFSDCTVITIAHRITSVID-SDMVLLLSHG 1265
+TA I + L+ H C I I+H++ V SD + ++ G
Sbjct: 175 TESETAVLLDIIRDLKAHGIAC--IYISHKLNEVKAISDTICVIRDG 219
|
Length = 506 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 2e-07
Identities = 59/232 (25%), Positives = 95/232 (40%), Gaps = 58/232 (25%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSI---GLHD 1127
VL ++ + G ++GR+G GKSTL + L + P+ G + G ++ +
Sbjct: 27 VLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKA 86
Query: 1128 LRSRLSIIPQD-PTMF--EGTVRNNLD-PL-------EEYKDEEIWEALDKCQLGDEVRN 1176
R + ++ QD + TVR + PL + + E L L D V +
Sbjct: 87 FRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLD 146
Query: 1177 K-EGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQT-- 1233
K +L S GQ Q VCL R L + K+L+LDEA +++D L+ Q
Sbjct: 147 KRPPQL-----------SGGQLQRVCLARALAVEPKLLILDEAVSNLD-----LVLQAGV 190
Query: 1234 ------LRQHF-SDCTVIT--------IAHRITSVIDSDMVLLLSHG-IIEE 1269
L+Q F + C IT R V+++ +G I+E
Sbjct: 191 IRLLKKLQQQFGTACLFITHDLRLVERFCQR---------VMVMDNGQIVET 233
|
Length = 268 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 2e-07
Identities = 45/211 (21%), Positives = 90/211 (42%), Gaps = 32/211 (15%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS 1130
L+G++ T G G +G G+GK+T ++ L +++PT+GE+ + G +
Sbjct: 36 ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAG-LVPWKRRKKFLR 94
Query: 1131 RLSIIPQDPTMFEGTVRNNLDPLEEY---------KDEEIWEALDKC----QLGDEVRNK 1177
R+ ++ T + +L ++ + + LD+ L +
Sbjct: 95 RIGVVFGQKT----QLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEEL---- 146
Query: 1178 EGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQH 1237
LD+ V S+GQR + LL + ++L LDE T +D I+ L+++
Sbjct: 147 ---LDTPV----RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEY 199
Query: 1238 FSD--CTVITIAHRITSVID-SDMVLLLSHG 1265
+ TV+ +H + + + VL++ G
Sbjct: 200 NRERGTTVLLTSHYMKDIEALARRVLVIDKG 230
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 52.9 bits (128), Expect = 2e-07
Identities = 52/210 (24%), Positives = 88/210 (41%), Gaps = 43/210 (20%)
Query: 1070 LVLRGLTCTFPG---------GMKTG----IVGRTGSGKSTLIQTLFRIVEPTAGEIVID 1116
L L GL+ +F G + G I+G G+GK+T++ + P G ++
Sbjct: 3 LYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFG 62
Query: 1117 GINISSIGLHDLRSRLSIIP--QDPTMFEG-TVRNNLD---------------PLEEYKD 1158
G +++ + H + +R I Q PT+FE TV NL+ L +
Sbjct: 63 GTDLTGLPEHQI-ARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEK 121
Query: 1159 EEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEA 1218
+ I E L+ L DE G L S GQ+Q + +G +L++ K+L+LDE
Sbjct: 122 DRIEEVLETIGLADEADRLAGLL-----------SHGQKQWLEIGMLLMQDPKLLLLDEP 170
Query: 1219 TASVDTATDNLIQQTLRQHFSDCTVITIAH 1248
A + + L+ +V+ + H
Sbjct: 171 VAGMTDEETEKTAELLKSLAGKHSVVVVEH 200
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 3e-07
Identities = 53/216 (24%), Positives = 93/216 (43%), Gaps = 44/216 (20%)
Query: 645 GMRVAVCGTVGSGKSSLLSCILGEVPKISGTLK------LCGTKAYVAQ----------- 687
G +A+ G GSGKS+L + G + SG + G ++ ++
Sbjct: 39 GQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNT 98
Query: 688 --SPWIQSGNIEDNIL----FGKPMDREKYDRVLEACSLKKDL-EILSFGDQTVIGERGI 740
+P ++ G I D L +P R K ++ E + L + ++
Sbjct: 99 SLNPRLRIGQILDFPLRLNTDLEPEQRRK--QIFETLRMVGLLPDHANYYPHM------- 149
Query: 741 NLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL-----LGLLRSKTVI 795
L+ GQKQR+ +ARAL I + D+ +++D S L +L G+ + I
Sbjct: 150 -LAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGI----SYI 204
Query: 796 YVTHQVEFLP-AADLILVMKDGKITQAGKYNDILNS 830
YVT + + +D +LVM +G++ + G D+L S
Sbjct: 205 YVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLAS 240
|
Length = 267 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 3e-07
Identities = 52/226 (23%), Positives = 96/226 (42%), Gaps = 31/226 (13%)
Query: 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGT 675
A+E+ +F + L D++ V G VA+ G G+GKS+L S + G
Sbjct: 1 ALEVAGLSFRY---GARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQ 57
Query: 676 LKLCGTKA------------YVAQSPWIQSG-NIEDNILF-----GKPMDREKYDRVLEA 717
+ + G V Q P + ++ N+ + G E R+ E
Sbjct: 58 ISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLS-RAEARARIAEL 116
Query: 718 CSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTG 777
L L ++ ++ L+GG ++R++IARAL + L D+P +D +
Sbjct: 117 ------LARLGLAERA--DDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASR 168
Query: 778 SHLFKEV-LLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAG 822
+ + V L + +V++ TH V+ + A D ++V+ G++ G
Sbjct: 169 AAITAHVRALARDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADG 214
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (127), Expect = 3e-07
Identities = 51/209 (24%), Positives = 96/209 (45%), Gaps = 27/209 (12%)
Query: 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGT 675
AI++ D +F ++ S + I++ ++ A+ G G GKS+ + L + ++ G
Sbjct: 7 AIKVKDLSFYYNTSK---AIEGISMDIYRNKVTAIIGPSGCGKSTFIK-TLNRISELEGP 62
Query: 676 LKLCGTKAYVAQSPWIQSGNI-----EDNILFGKP-------MDREKYDRVLEACSLKKD 723
+K+ G + Q+ + NI + ++F +P + Y + A + D
Sbjct: 63 VKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQAD 122
Query: 724 L-EILSFGDQTV---------IGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVD 773
L EI+ + + + + LSGGQ+QR+ IARAL + L D+P SA+D
Sbjct: 123 LDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALD 182
Query: 774 AHTGSHLFKEVLLGLLRSKTVIYVTHQVE 802
+ +E++ L T+ VTH ++
Sbjct: 183 P-IATMKVEELIHSLRSELTIAIVTHNMQ 210
|
Length = 259 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 55.0 bits (132), Expect = 3e-07
Identities = 52/203 (25%), Positives = 91/203 (44%), Gaps = 11/203 (5%)
Query: 630 SNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSP 689
S P + +N+ + A G G+GK++ LS + G +P SGT+ + G
Sbjct: 941 SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDA 1000
Query: 690 WIQSGNI--EDNILFGKPMDREKY-------DRVLEACSLKKDLEILSFGDQTVIGERGI 740
QS + + NILF E R E L+ + + G E
Sbjct: 1001 VRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQ 1060
Query: 741 NLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQ 800
+LSGG ++++ +A A DA + + D+P S VD ++ ++ ++LL +T+I TH
Sbjct: 1061 DLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIW-DLLLKYRSGRTIIMSTHH 1119
Query: 801 V-EFLPAADLILVMKDGKITQAG 822
+ E D I ++ G++ +G
Sbjct: 1120 MDEADLLGDRIAIISQGRLYCSG 1142
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 4e-07
Identities = 47/208 (22%), Positives = 86/208 (41%), Gaps = 30/208 (14%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSG 694
+ ++ V G + G G+GK++ L + G + +G + G V + P
Sbjct: 21 VDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFD--VVKEPAEARR 78
Query: 695 NIEDNILFGKPMDREKYDRV--------------LEACSLKKDLEILS--FGDQTVIGER 738
+ + YDR+ L+ L LE L+ G + ++ R
Sbjct: 79 RL--GFVSDS---TGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRR 133
Query: 739 GINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRS-KTVIYV 797
S G +Q++ IARAL D + L D+P + +D + +E + L K +++
Sbjct: 134 VGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDV-MATRALREFIRQLRALGKCILFS 192
Query: 798 TH---QVEFLPAADLILVMKDGKITQAG 822
TH +VE L D ++V+ G++ G
Sbjct: 193 THIMQEVERL--CDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 53.8 bits (129), Expect = 4e-07
Identities = 62/246 (25%), Positives = 99/246 (40%), Gaps = 21/246 (8%)
Query: 1033 SSEPPLVIEESRPDCSWPTHGEVDILNLQ-VRYAP-----HLPLVLRGLTCTFPGGMKTG 1086
EP L + ++ VD + L+ V P L + G
Sbjct: 313 EPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVF 372
Query: 1087 IVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTV 1146
IVG G GKSTL + + P GEI++DG +S+ D R S I D +F+ +
Sbjct: 373 IVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLI 432
Query: 1147 RNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVL 1206
D E + + L + ++ D+V+ ++G S T S GQ++ + L
Sbjct: 433 GP--DEGEHASLDNAQQYLQRLEIADKVKIEDGGF-STTTA----LSTGQQKRLALICAW 485
Query: 1207 LKKSKVLVLDEATASVDTATDNLIQQTL-----RQHFSDCTVITIAHRITSVIDSDMVLL 1261
L+ +L+ DE A D A + L RQ T+I I+H +D ++
Sbjct: 486 LEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQ---GKTIIIISHDDQYFELADQIIK 542
Query: 1262 LSHGII 1267
L+ G I
Sbjct: 543 LAAGCI 548
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 4e-07
Identities = 59/214 (27%), Positives = 90/214 (42%), Gaps = 41/214 (19%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT---------KA-- 683
L +++ + G +A+ G+ GSGKS+LL + G SG + G KA
Sbjct: 25 LHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84
Query: 684 ------YVAQ-----SPWIQSGNIEDNILFGKPMDREKYDRVLE---ACSLKKDLEILSF 729
++ Q + N+ +L GK E R LE A L+
Sbjct: 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRAN---- 140
Query: 730 GDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL 789
R LSGG++QR+ IARAL + + L D+P +DA +F+ LLG L
Sbjct: 141 -------HRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQ--LLGEL 191
Query: 790 --RSKTV-IYVTHQVEFLPAADLILVMKDGKITQ 820
T + VTH ++ L M+DG++T
Sbjct: 192 NRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTA 225
|
Length = 233 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 4e-07
Identities = 30/170 (17%), Positives = 56/170 (32%), Gaps = 44/170 (25%)
Query: 648 VAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGNIEDNILFGKPMD 707
+ + G GSGK++L + E+ G + + + +
Sbjct: 5 ILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL-------------- 50
Query: 708 REKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDD 767
++G + + SG + R+ +A A D+ + D+
Sbjct: 51 ------------------------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDE 86
Query: 768 PFSAVDAHTGSHLFKEVLLGLL------RSKTVIYVTHQVEFLPAADLIL 811
S +DA + L L LL ++ TVI T+ + L A L
Sbjct: 87 ITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR 136
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 4e-07
Identities = 48/214 (22%), Positives = 80/214 (37%), Gaps = 56/214 (26%)
Query: 630 SNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVP---KISGTLKLCG------ 680
S P L+D + V G V V G GSG S+LL + + G + G
Sbjct: 18 SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEF 77
Query: 681 ------TKAYVAQSPW-IQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQT 733
YV++ + + + + F A K G++
Sbjct: 78 AEKYPGEIIYVSEEDVHFPTLTVRETLDF--------------ALRCK--------GNEF 115
Query: 734 VIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKT 793
V RGI SGG+++R+ IA AL A + +D+ +D+ T + K +R+
Sbjct: 116 V---RGI--SGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILK-----CIRTMA 165
Query: 794 VIY-VTHQVEFLPAA-------DLILVMKDGKIT 819
+ T V A+ D +LV+ +G+
Sbjct: 166 DVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQI 199
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 5e-07
Identities = 47/190 (24%), Positives = 90/190 (47%), Gaps = 24/190 (12%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LGEVPKISGTLKLCGTKAY----- 684
L+ I++++ VA G G GKS+ L L ++ G +++ G Y
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78
Query: 685 ----------VAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTV 734
V Q P +I +N+ +G ++ K + + +++ L+ + D+
Sbjct: 79 VDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQ-RVEETLKGAALWDEVK 137
Query: 735 --IGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSK 792
+ E LSGGQ+QR+ IARA+ + L D+P SA+D + + + +E++ L +
Sbjct: 138 DKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKV-EELIHELKKDY 196
Query: 793 TVIYVTHQVE 802
T++ VTH ++
Sbjct: 197 TIVIVTHNMQ 206
|
Length = 250 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 5e-07
Identities = 52/190 (27%), Positives = 91/190 (47%), Gaps = 26/190 (13%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LGEVPKISGTLKLCGTKAY----- 684
++++ + G A+ G G GKS++L + L E + G + GT Y
Sbjct: 29 VKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88
Query: 685 ----------VAQSPWIQSGNIEDNILFGKPMDREK--YDRVLEACSLKKDLEILSFGDQ 732
V Q P +I +NI FG ++ D ++E SL+K D+
Sbjct: 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVER-SLRKAAVWDECKDK 147
Query: 733 TVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSK 792
+ E G +LSGGQ+QR+ IAR + + ++ L D+P SA+D + + +E + L ++
Sbjct: 148 --LNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKI-EETMHELKKNF 204
Query: 793 TVIYVTHQVE 802
T++ VTH ++
Sbjct: 205 TIVIVTHNMQ 214
|
Length = 269 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (126), Expect = 5e-07
Identities = 50/218 (22%), Positives = 98/218 (44%), Gaps = 18/218 (8%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-TKAYVAQSPWIQS 693
L DI+L+V G A+ G GSGKS+LL + G + G + + + ++ I+
Sbjct: 22 LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81
Query: 694 GNIEDNILFGKPMDREKYDRVLEACSL--------KKDLEILSFGDQTVIG-------ER 738
+ ++F P + + VL+ + K+ E ++ ++G +
Sbjct: 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKS 141
Query: 739 GINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVT 798
LSGGQ +R+ IA L + ++ + D+P + +D + + +TV+ VT
Sbjct: 142 PFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVT 201
Query: 799 HQVEFLPA-ADLILVMKDGKITQAGKYNDILNSGTDFM 835
H ++ + AD + +++ G I G +D+ DF+
Sbjct: 202 HLMDDVADYADYVYLLEKGHIISCGTPSDVFQE-VDFL 238
|
Length = 288 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 5e-07
Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 3/65 (4%)
Query: 739 GINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSK-TVIYV 797
G LSGGQ+QR+ IARA+ + D+ L D+P SA+D S L E L+ L+ T++ V
Sbjct: 146 GGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPI--STLAIEDLINELKQDYTIVIV 203
Query: 798 THQVE 802
TH ++
Sbjct: 204 THNMQ 208
|
Length = 258 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 5e-07
Identities = 59/222 (26%), Positives = 93/222 (41%), Gaps = 50/222 (22%)
Query: 631 NNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLC-GTKA-YVAQS 688
L+DI+L F G ++ V G G+GKS+LL + G + +G + G K Y+ Q
Sbjct: 17 KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQE 76
Query: 689 PWIQS-----GNIED---------------NILFGKP---MDR-----EKYDRVLEAC-- 718
P + N+E+ + F +P MD + +++A
Sbjct: 77 PQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADA 136
Query: 719 -SLKKDLEI------LSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSA 771
L + LEI D V LSGG+++R+ + R L D+ L D+P +
Sbjct: 137 WDLDRKLEIAMDALRCPPWDADVT-----KLSGGERRRVALCRLLLSKPDMLLLDEPTNH 191
Query: 772 VDAHTGSHLFKEVLLGLLRSK-TVIYVTHQVEFLP-AADLIL 811
+DA + + L + L TV+ VTH FL A IL
Sbjct: 192 LDAESVAWLEQH----LQEYPGTVVAVTHDRYFLDNVAGWIL 229
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 50.5 bits (122), Expect = 6e-07
Identities = 43/157 (27%), Positives = 65/157 (41%), Gaps = 43/157 (27%)
Query: 1086 GIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDG--INISSIGLHDLRSRLSIIPQDPTMFE 1143
GI G G+G++ L + LF + P +GEI +DG + S +R+ ++ +P+D
Sbjct: 30 GIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPR-DAIRAGIAYVPED----- 83
Query: 1144 GTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEG-KLDSRVTEN---GENWSMGQRQL 1199
R +EG LD V EN S G +Q
Sbjct: 84 -------------------------------RKREGLVLDLSVAENIALSSLLSGGNQQK 112
Query: 1200 VCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQ 1236
V L R L + +VL+LDE T VD I + +R+
Sbjct: 113 VVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRE 149
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 6e-07
Identities = 46/170 (27%), Positives = 80/170 (47%), Gaps = 25/170 (14%)
Query: 645 GMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------------AYVAQSPWIQ 692
G + V G GSGK++LL + G P ++G + L G Y+ +P I+
Sbjct: 26 GEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIK 85
Query: 693 SG-NIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQ 751
+ ++ +N+ F + ++V EA + + + F D+ V LS GQ++R+
Sbjct: 86 TTLSVLENLRFWHADHSD--EQVEEALA---RVGLNGFEDRPVA-----QLSAGQQRRVA 135
Query: 752 IARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLG-LLRSKTVIYVTHQ 800
+AR L +++ D+P +A+D G F E + G R V+ THQ
Sbjct: 136 LARLLLSGRPLWILDEPTTALDK-AGVARFAEAMAGHCARGGMVVLTTHQ 184
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 6e-07
Identities = 49/190 (25%), Positives = 77/190 (40%), Gaps = 46/190 (24%)
Query: 633 PTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGT---------LKLCG--- 680
P L++++L V G VA+ G G+GKS+LL + SG + L
Sbjct: 22 PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81
Query: 681 ---------TKAYVAQ----SPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEIL 727
T YV+Q P + + + L + + RE A L L I
Sbjct: 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREA--ARARARELLARLNI- 138
Query: 728 SFGDQTVIGERGINL-----SGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFK 782
ER +L SGG++QR+ IAR D I L D+P +++DA +
Sbjct: 139 --------PERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAAN-----R 185
Query: 783 EVLLGLLRSK 792
+V++ L+
Sbjct: 186 QVVVELIAEA 195
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 6e-07
Identities = 51/174 (29%), Positives = 80/174 (45%), Gaps = 19/174 (10%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGI---NISSIGLHD 1127
VL ++ + G IVG +GSGKSTL+ L + PT+G+++ +G +SS +
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83
Query: 1128 LRSR-LSIIPQ------DPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGK 1180
LR++ L I Q D T E N PL K + E + E+ G
Sbjct: 84 LRNQKLGFIYQFHHLLPDFTALE----NVAMPLLIGKKKPA-EINSRAL---EMLAAVG- 134
Query: 1181 LDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTL 1234
L+ R S G+RQ V + R L+ ++++ DE T ++D + I Q L
Sbjct: 135 LEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLL 188
|
Length = 233 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 7e-07
Identities = 47/227 (20%), Positives = 82/227 (36%), Gaps = 33/227 (14%)
Query: 1059 NLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDG- 1117
N+ VR +L L+ G IVG G+GK+TL+ L P++G++ + G
Sbjct: 36 NVSVRRNGKK--ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGR 93
Query: 1118 --------------INISSIGLH-DLRSRLSIIPQDPTMFEGTVRNNLDPLEEYKDEEIW 1162
I + S LH R R ++ + F ++ + L
Sbjct: 94 RFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTA------- 146
Query: 1163 EALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASV 1222
E L Q E + S G+++ V + R L+K ++L+LDE +
Sbjct: 147 EDLAAAQWLLE----LLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGL 202
Query: 1223 DTATDNLIQQTLRQHFSDC---TVITIAHRITSVIDS-DMVLLLSHG 1265
D + L + + ++ + H + LLL G
Sbjct: 203 DLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEG 249
|
Length = 257 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 7e-07
Identities = 63/229 (27%), Positives = 109/229 (47%), Gaps = 32/229 (13%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINI--SSIGLHDL 1128
V+ L T G ++G +G GK+T+++ + + +PT G+I IDG ++ SI D+
Sbjct: 21 VIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDI 80
Query: 1129 RSRLSIIPQDPTMF-EGTVRNNLD--------PLEEYKDEEIWEALDKCQLGDEVRNKEG 1179
++ Q +F ++ N+ P EE K + + EAL+ L G
Sbjct: 81 ----CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERK-QRVKEALELVDL-------AG 128
Query: 1180 KLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLR---Q 1236
D V + S GQ+Q V L R L+ K KVL+ DE +++D +++ +R Q
Sbjct: 129 FEDRYV----DQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQ 184
Query: 1237 HFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENKSSSF 1284
F + T + + H + SD V++++ G I + SP +L +S F
Sbjct: 185 QF-NITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPASRF 232
|
Length = 351 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 7e-07
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 15/91 (16%)
Query: 684 YVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGI-NL 742
YV P G + + L K +R K D +++ L+ L+ R I L
Sbjct: 95 YVDLIPKAVKGKVGE--LLKKKDERGKLDELVDQLELRHVLD------------RNIDQL 140
Query: 743 SGGQKQRIQIARALYQDADIYLFDDPFSAVD 773
SGG+ QR+ IA AL +DAD Y FD+P S +D
Sbjct: 141 SGGELQRVAIAAALARDADFYFFDEPSSYLD 171
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 8e-07
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 737 ERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIY 796
++LSGGQ+QR+ IAR L + L D+P SA+D + + + +E++ L ++I
Sbjct: 160 SSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKI-EELITELKEEYSIII 218
Query: 797 VTHQV-EFLPAADLILVMKDGKITQAGKYNDILNS 830
VTH + + L +D +G + + + I S
Sbjct: 219 VTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIFTS 253
|
Length = 268 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 9e-07
Identities = 57/215 (26%), Positives = 98/215 (45%), Gaps = 24/215 (11%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINIS---SIG--- 1124
VL G+ G I+G +GSGK+TL++ + + +P AG I + I I S+
Sbjct: 18 VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQK 77
Query: 1125 --LHDLRSRLSIIPQDPTMF-EGTVRNNL--DPL---EEYKDEEIWEALDKCQLGDEVRN 1176
+ LR + + Q+ +F TV N+ P+ E K+E E+
Sbjct: 78 GLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEAT-------ARARELLA 130
Query: 1177 KEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQ 1236
K G L + T S GQ+Q V + R L + +V++ DE T+++D + T+RQ
Sbjct: 131 KVG-LAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQ 189
Query: 1237 HFSDC-TVITIAHRITSVID-SDMVLLLSHGIIEE 1269
+ T++ + H ++ D +D + + G I E
Sbjct: 190 LAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVE 224
|
Length = 250 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 1e-06
Identities = 44/198 (22%), Positives = 81/198 (40%), Gaps = 32/198 (16%)
Query: 1086 GIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQD------- 1138
G++G G+GK+TL++ + ++ P G + + G + H + +PQ
Sbjct: 10 GLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRH-----IGYVPQRHEFAWDF 64
Query: 1139 PTMFEGTVRNN----LDPLEEYKDEE---IWEALDKCQLGDEVRNKEGKLDSRVTENGEN 1191
P TV + + L + + +AL + L + G+L
Sbjct: 65 PISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGEL---------- 114
Query: 1192 WSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSD-CTVITIAHRI 1250
S GQRQ V + R L + VL+LDE +D T L+ + + ++ H +
Sbjct: 115 -SGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDL 173
Query: 1251 TSVIDS-DMVLLLSHGII 1267
+ + D V+LL+ +I
Sbjct: 174 AQAMATCDRVVLLNGRVI 191
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 1e-06
Identities = 54/214 (25%), Positives = 97/214 (45%), Gaps = 29/214 (13%)
Query: 637 DINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKL---------CGTKA---- 683
D++L V G V + G G+GK++ ++G VP+ +G + + +A
Sbjct: 21 DVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI 80
Query: 684 -YVAQSPWI-QSGNIEDNIL----FGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGE 737
Y+ Q I + ++ DN++ + E+ R A L ++ I D
Sbjct: 81 GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQ--REDRANELMEEFHIEHLRDSM---- 134
Query: 738 RGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYV 797
G +LSGG+++R++IARAL + L D+PF+ VD + + K ++ L S + +
Sbjct: 135 -GQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDI-KRIIEHLRDSGLGVLI 192
Query: 798 T-HQV-EFLPAADLILVMKDGKITQAGKYNDILN 829
T H V E L + ++ G + G +IL
Sbjct: 193 TDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226
|
Length = 241 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 1e-06
Identities = 50/201 (24%), Positives = 94/201 (46%), Gaps = 17/201 (8%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS 1130
+ ++ P G G++G G+GK+T + + ++EPT GEI +G +S +++
Sbjct: 17 AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQE----IKN 72
Query: 1131 RLSIIPQD----PTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVT 1186
R+ +P++ P M TV + L L E K E K Q E GK ++
Sbjct: 73 RIGYLPEERGLYPKM---TVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKI- 128
Query: 1187 ENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQ-HFSDCTVIT 1245
+ S G +Q + ++ + ++L+LDE + +D L++ + + T+I
Sbjct: 129 ---KELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIF 185
Query: 1246 IAHRITSVID-SDMVLLLSHG 1265
+HR+ V + D +L+L G
Sbjct: 186 SSHRMEHVEELCDRLLMLKKG 206
|
Length = 300 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 1e-06
Identities = 54/211 (25%), Positives = 91/211 (43%), Gaps = 47/211 (22%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVI-DGINISSIGLHDLR 1129
+L+ ++ +F G K G++G G+GKSTL++ + + + GE GI +
Sbjct: 20 ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKV--------- 70
Query: 1130 SRLSIIPQDPTMFEG-TVRNN-----------LDPLEE----YKDE------------EI 1161
+PQ+P + TVR N LD E + + E+
Sbjct: 71 ---GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAEL 127
Query: 1162 WEALDKCQLGDEVRNKEGKLDS-RVTENG---ENWSMGQRQLVCLGRVLLKKSKVLVLDE 1217
E +D D R E +D+ R S G+R+ V L R+LL K +L+LDE
Sbjct: 128 QEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDE 187
Query: 1218 ATASVDTATDNLIQQTLRQHFSDCTVITIAH 1248
T +D + ++Q L+++ TV+ + H
Sbjct: 188 PTNHLDAESVAWLEQHLQEYPG--TVVAVTH 216
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 1e-06
Identities = 46/171 (26%), Positives = 71/171 (41%), Gaps = 39/171 (22%)
Query: 633 PTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGE---------VPKISGTLKLCG--- 680
P LR+++L V G V + G GSGKS+LL + V + L
Sbjct: 25 PVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEP 84
Query: 681 ---------TKAYVAQ----SPWIQSGNI--EDNILFGKPMD--REKYDRVLEACSLKKD 723
T YV+Q P + + ++ E + G P + R K +L +L +
Sbjct: 85 REVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPER 144
Query: 724 LEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDA 774
L L+ SGG++QR+ IAR D I L D+P +++DA
Sbjct: 145 LWSLAPA----------TFSGGEQQRVNIARGFIVDYPILLLDEPTASLDA 185
|
Length = 235 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 1e-06
Identities = 56/213 (26%), Positives = 85/213 (39%), Gaps = 53/213 (24%)
Query: 633 PTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGE-VPKI------------------- 672
PT R G V + G G GKS+ L + GE P +
Sbjct: 95 PTPRP-------GKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGT 147
Query: 673 ----------SGTLKLCGTKAYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKK 722
G L+ YV P + G + + L K +R K+D V+E L+
Sbjct: 148 ELQNYFKKLYEGELRAVHKPQYVDLIPKVVKGKVGE--LLKKVDERGKFDEVVERLGLEN 205
Query: 723 DLEILSFGDQTVIGERGIN-LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLF 781
L+ R ++ LSGG+ QR+ IA AL +DAD+Y FD+P S +D +
Sbjct: 206 VLD------------RDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAA 253
Query: 782 KEVLLGLLRSKTVIYVTHQVEFLPA-ADLILVM 813
+ + K VI V H + L +D + ++
Sbjct: 254 RVIRELAEDGKYVIVVEHDLAVLDYLSDFVHIL 286
|
Length = 591 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 1e-06
Identities = 47/178 (26%), Positives = 75/178 (42%), Gaps = 27/178 (15%)
Query: 1070 LVLRGLTCTF-PGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDL 1128
++ GL+ T G + I G G+GK++L++ L + P AGE++ G I
Sbjct: 15 ILFSGLSFTLNAGEL-VQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYH 73
Query: 1129 RSRLSI-----IPQDPTMFEGTVRNNLDPL----EEYKDEEIWEALDKCQLGDEVRNKEG 1179
+ L + I + T E NL DE +WEAL + L G
Sbjct: 74 QDLLYLGHQPGIKTELTALE-----NLRFYQRLHGPGDDEALWEALAQVGLA-------G 121
Query: 1180 KLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQH 1237
D V S GQ++ V L R+ L ++ + +LDE ++D ++ L QH
Sbjct: 122 FEDVPV----RQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQH 175
|
Length = 204 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 2e-06
Identities = 57/221 (25%), Positives = 101/221 (45%), Gaps = 39/221 (17%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK-----ISGTLKLCGT---KAYVA 686
++ I+ + G +A+ G GSGKS ILG +P SG++ G A
Sbjct: 26 VKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85
Query: 687 QSPWIQSGNIEDNILFGKPMDR-------EKYDRVLEACSLKKDL-------EILSFGDQ 732
Q ++ I ++F +PM K ++ E L + L L +
Sbjct: 86 QLRGVRGNKI--GMIFQEPMTSLNPLHTIGK--QLAEVLRLHRGLSRAAARARALELLEL 141
Query: 733 TVI--GERGIN-----LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL 785
I E+ ++ LSGGQ+QR+ IA AL + D+ + D+P +A+D + + L
Sbjct: 142 VGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILD--L 199
Query: 786 LGLLRSK---TVIYVTHQVEFLPA-ADLILVMKDGKITQAG 822
L L+++ ++++TH + + AD + VM+ G+I + G
Sbjct: 200 LKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETG 240
|
Length = 534 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 2e-06
Identities = 48/180 (26%), Positives = 94/180 (52%), Gaps = 26/180 (14%)
Query: 1087 IVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRL--SIIPQDPTMF-E 1143
++G G+GKSTL++ L I EPT G I I+ IN + + H L ++L II Q+ ++ E
Sbjct: 36 LLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLD-HKLAAQLGIGIIYQELSVIDE 94
Query: 1144 GTVRNNL------------DPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGEN 1191
TV NL + ++++ + A+ ++G +V LD +V N
Sbjct: 95 LTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKV-----DLDEKV----AN 145
Query: 1192 WSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCT-VITIAHRI 1250
S+ +Q++ + + L+ +KV+++DE T+S+ + + + Q + T ++ I+H++
Sbjct: 146 LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKL 205
|
Length = 510 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 2e-06
Identities = 62/261 (23%), Positives = 113/261 (43%), Gaps = 39/261 (14%)
Query: 580 MIIQTKVSLDRIASFLCLDDLQSDVVEKHPRGSSETAIEIVDGNFAWDISSNNPTLRDIN 639
++ +V+ +++ L +++ + +E+ + FA+ N ++ IN
Sbjct: 288 TLLSAQVAFNKLNKL-ALAPYKAEF-PRPQAFPDWQTLELRNVTFAYQ--DNGFSVGPIN 343
Query: 640 LKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGNIE-- 697
L + G + + G GSGKS+L + G SG + L G + + E
Sbjct: 344 LTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKP--------VTAEQPEDY 395
Query: 698 ---------DNILF-------GKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGIN 741
D LF GKP + ++ LE + LE D + +
Sbjct: 396 RKLFSAVFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLE---LEDGRI---SNLK 449
Query: 742 LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRS--KTVIYVTH 799
LS GQK+R+ + AL ++ DI L D+ + D H F +VLL LL+ KT+ ++H
Sbjct: 450 LSKGQKKRLALLLALAEERDILLLDEWAADQDPHF-RREFYQVLLPLLQEMGKTIFAISH 508
Query: 800 QVEFLPAADLILVMKDGKITQ 820
+ AD +L M++G++++
Sbjct: 509 DDHYFIHADRLLEMRNGQLSE 529
|
Length = 547 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 2e-06
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Query: 740 INLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL-LGLLRSKTVIYVT 798
I+LSGG+ QR+ IA AL ++A YLFD+P + +D + + + L KT + V
Sbjct: 70 IDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVE 129
Query: 799 HQVEFLP-AADLILVM--KDGKITQAGKYNDILNSGTDFMVLVG 839
H + L +D I V + G A + F+
Sbjct: 130 HDLAVLDYLSDRIHVFEGEPGVYGIASQPKGTREGINRFLRGYL 173
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 2e-06
Identities = 43/186 (23%), Positives = 79/186 (42%), Gaps = 20/186 (10%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS 1130
L ++ G G +G G+GKST ++ + + P +G + + G ++ +++
Sbjct: 17 ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPK-EVQR 75
Query: 1131 RLSIIPQ-DPTMFEGTVRNNLDPL-------EEYKDEEIWEALDKCQLGDEVRNKEGKLD 1182
+ +P+ +P + VR L + + + + E ++ L E K G+L
Sbjct: 76 NIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQL- 134
Query: 1183 SRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCT 1242
S G RQ V L + L+ KVL+LDE T +D I+ ++ D T
Sbjct: 135 ----------SKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKT 184
Query: 1243 VITIAH 1248
+I H
Sbjct: 185 IILSTH 190
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 2e-06
Identities = 39/142 (27%), Positives = 59/142 (41%), Gaps = 27/142 (19%)
Query: 1086 GIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDPTM-FEG 1144
GI+G G GK+T I+ L +++P G+I I+ + S PQ +EG
Sbjct: 29 GILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTV------------SYKPQYIKADYEG 76
Query: 1145 TVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNK---EGKLDSRVTENGENWSMGQRQLVC 1201
TVR+ L + E+ E LD V E S G+ Q V
Sbjct: 77 TVRDLL-------SSITKDFYTHPYFKTEIAKPLQIEQILDREVPE----LSGGELQRVA 125
Query: 1202 LGRVLLKKSKVLVLDEATASVD 1223
+ L K + + +LDE +A +D
Sbjct: 126 IAACLSKDADIYLLDEPSAYLD 147
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 3e-06
Identities = 60/236 (25%), Positives = 101/236 (42%), Gaps = 36/236 (15%)
Query: 1059 NLQVRY---APHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEI-- 1113
NL + + + V R L+ + G IVG +GSGKS L R++E G +
Sbjct: 17 NLNIAFMQEQQKIAAV-RNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQC 75
Query: 1114 -----------VIDGINISSIGLHDLR-SRLSIIPQDPTMFEGTVRNNLDPLEEYKDEEI 1161
VI+ S+ + +R + +++I Q+P T N + + E E I
Sbjct: 76 DKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPM----TSLNPVFTVGEQIAESI 131
Query: 1162 W--------EALDKCQ-LGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKV 1212
EA+ + + + D+VR E + + ++ S G RQ V + L + V
Sbjct: 132 RLHQGASREEAMVEAKRMLDQVRIPEAQ--TILSRYPHQLSGGMRQRVMIAMALSCRPAV 189
Query: 1213 LVLDEATASVDTATDNLIQQTLR--QHFSDCTVITIAHRITSVID-SDMVLLLSHG 1265
L+ DE T ++D I Q ++ Q VI I H + V + +D VL++ G
Sbjct: 190 LIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQG 245
|
Length = 623 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 3e-06
Identities = 59/231 (25%), Positives = 94/231 (40%), Gaps = 52/231 (22%)
Query: 628 ISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILG----EVPKISGTLKLCGT-- 681
+ L+ +NL V G A+ G GSGKS+L I+G EV G + G
Sbjct: 13 VEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEV--TEGEILFDGEDI 70
Query: 682 -------KA----YVA-QSPW-IQSGNIED-------NILFGKPMDREKYDRVLEACSLK 721
+A ++A Q P I D + + E + E
Sbjct: 71 LELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEK---- 126
Query: 722 KDLEILSFGDQTVIGERGIN--LSGGQKQRIQIARALYQDADIYLFDDPFSA--VDAHTG 777
E+L ++ ER +N SGG+K+R +I + L + + + D+P S +DA
Sbjct: 127 --AELLGLDEE--FLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDA--- 179
Query: 778 SHLFKEVLLGL--LRSK--TVIYVTHQVEFLPA--ADLILVMKDGKITQAG 822
K V G+ LR + V+ +TH L D + V+ DG+I ++G
Sbjct: 180 ---LKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSG 227
|
Length = 251 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 3e-06
Identities = 56/208 (26%), Positives = 88/208 (42%), Gaps = 33/208 (15%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------------ 682
L + L V G +A+ G GSGKS+LL+ + G SG + L G
Sbjct: 26 LTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85
Query: 683 -----AYVAQS----PWIQS-GNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQ 732
+V QS P + + N+E L R+ + LE L G +
Sbjct: 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKAL------LEQLGLGKR 139
Query: 733 TVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLR-- 790
+ LSGG++QR+ +ARA D+ D+P +D TG + ++L L R
Sbjct: 140 --LDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKI-ADLLFSLNREH 196
Query: 791 SKTVIYVTHQVEFLPAADLILVMKDGKI 818
T+I VTH ++ D L + +G++
Sbjct: 197 GTTLILVTHDLQLAARCDRRLRLVNGQL 224
|
Length = 228 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 3e-06
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 742 LSGGQKQRIQIARALYQDAD--IYLFDDPFSAVDAHTGSHLFKEVLLGLLRSK-TVIYVT 798
LSGG+ QR+++A L+ + +++ D+P + + + L EV+ GL+ TVI +
Sbjct: 88 LSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLL-EVIKGLIDLGNTVILIE 146
Query: 799 HQVEFLPAADLILVMKDGKITQAGK 823
H ++ L +AD I+ G GK
Sbjct: 147 HNLDVLSSADWIIDFGPGSGKSGGK 171
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 4e-06
Identities = 59/207 (28%), Positives = 101/207 (48%), Gaps = 27/207 (13%)
Query: 1070 LVLRGLTCTFPGGMKT--------------GIVGRTGSGKSTLIQTLFRIVEPTA---GE 1112
L ++G+ TF GG+K G+ G G+GKSTL++ L + P GE
Sbjct: 2 LEMKGIVKTF-GGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGV-YPHGTWDGE 59
Query: 1113 IVIDGINISSIGLHDL-RSRLSIIPQDPTMF-EGTVRNNLDPLEEYKDEEIWEALDKCQL 1170
I G + + + D R+ + II Q+ T+ E +V N+ E A + L
Sbjct: 60 IYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYL 119
Query: 1171 GDEVRNKEGKLD-SRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTA-TDN 1228
+ +E +LD VT ++ GQ+QLV + + L K++++L+LDE ++S+ T+
Sbjct: 120 RAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEI 179
Query: 1229 L--IQQTLRQHFSDCTVITIAHRITSV 1253
L I + L+ H C + I+H++ V
Sbjct: 180 LLDIIRDLKAHGVAC--VYISHKLNEV 204
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 4e-06
Identities = 56/246 (22%), Positives = 96/246 (39%), Gaps = 45/246 (18%)
Query: 1075 LTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSI 1134
++ P G G +G G+GKST ++ L ++ PT+G++ ++G D R
Sbjct: 43 ISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNG--------KDPFRRREE 94
Query: 1135 IPQDPTMFEGT---------VRNNLDPLEEYKD----------EEIWEALDKCQLGDEVR 1175
+ + G ++L+ L+ + + + E LD L ++
Sbjct: 95 YLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILD---LEGFLK 151
Query: 1176 NKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLR 1235
KL S+GQR L LL KVL LDE T +D I++ L+
Sbjct: 152 WPVRKL-----------SLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLK 200
Query: 1236 QHFS--DCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLVAEYT 1292
++ TV+ H + D VLL+ G + +D L+ + + + E
Sbjct: 201 EYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQL-VFDGTLAQLQEQFGPYKEFSVELK 259
Query: 1293 QRSSSS 1298
Q S S
Sbjct: 260 QAKSLS 265
|
Length = 325 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 4e-06
Identities = 52/207 (25%), Positives = 96/207 (46%), Gaps = 13/207 (6%)
Query: 1087 IVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHD-LRSRLSIIPQDPTMFEG- 1144
++G G+GK+TL+ TL T+G IV DG +I+ +R ++I+P+ +F
Sbjct: 36 LIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRM 95
Query: 1145 TVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGR 1204
TV NL + + + ++ + V +L R + S G++Q++ +GR
Sbjct: 96 TVEENLAMGGFFAERDQFQ-----ERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGR 150
Query: 1205 VLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITI----AHRITSVIDSDMVL 1260
L+ + ++L+LDE + + I T+ Q I + A++ + D VL
Sbjct: 151 ALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVL 210
Query: 1261 LLSHGIIEEYDSPTKLLENKSSSFAQL 1287
H ++E D+ LL N++ A L
Sbjct: 211 ENGHVVLE--DTGDALLANEAVRSAYL 235
|
Length = 237 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 4e-06
Identities = 48/201 (23%), Positives = 88/201 (43%), Gaps = 30/201 (14%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGL----- 1125
L L+ TF T I G G GKS+L++ + I++P++G I NI++I
Sbjct: 15 NLFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTY 74
Query: 1126 --HDLRSRLSIIPQDPTMFEGTVRNNLDPLEEYKD--EEIWEALDKCQLGDEVRNKEGKL 1181
H+L +L E TV NL E + E ++ A+ +L D + K L
Sbjct: 75 IGHNLGLKL----------EMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSL 124
Query: 1182 DSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDC 1241
S G +++V + R++ +S + +LDE ++ +L+ + +
Sbjct: 125 SS-----------GMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSG 173
Query: 1242 TVITIAHRITSVIDSDMVLLL 1262
++ ++ + S I S +L L
Sbjct: 174 GIVLLSSHLESSIKSAQILQL 194
|
Length = 195 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 4e-06
Identities = 61/238 (25%), Positives = 99/238 (41%), Gaps = 55/238 (23%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVP--------KISGTLKLCGT----- 681
LRD++L++ G A+ G G+GKS+LL + G++ +++G + L G
Sbjct: 17 LRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAI 76
Query: 682 --------KAYVAQSPWIQSG---NIEDNILFGK-PMDR-----EKYDRVLEACSLKKDL 724
+A + Q+ Q + + +L G+ P R D + +L
Sbjct: 77 DAPRLARLRAVLPQAA--QPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALA- 133
Query: 725 EILSFGDQTVIGERGINLSGGQKQRIQIARALYQ---------DADIYLFDDPFSAVD-A 774
G ++G LSGG+ R+Q AR L Q L D+P +A+D A
Sbjct: 134 -----GATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLA 188
Query: 775 HTGSHLFKEVLLGLLR--SKTVIYVTHQVEFLPA--ADLILVMKDGKITQAGKYNDIL 828
H H + + L R + V+ + H L A AD I ++ DG I G D+L
Sbjct: 189 H--QHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHADRIAMLADGAIVAHGAPADVL 243
|
Length = 272 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 5e-06
Identities = 49/172 (28%), Positives = 80/172 (46%), Gaps = 26/172 (15%)
Query: 1070 LVLRGLTCTFPG-------------GMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVID 1116
L G+ TFPG G ++G G+GKSTL++ L +P AG I+ID
Sbjct: 5 LSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILID 64
Query: 1117 GINISSIGLHD-LRSRLSIIPQD----PTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLG 1171
G + L + ++II Q+ P M TV NL L + + +++ L
Sbjct: 65 GQEMRFASTTAALAAGVAIIYQELHLVPEM---TVAENL-YLGQLPHKGGI--VNRRLLN 118
Query: 1172 DEVRNKEGKLDSRVTENG--ENWSMGQRQLVCLGRVLLKKSKVLVLDEATAS 1221
E R + L + + + S+GQRQ+V + + L + ++V+ DE T+S
Sbjct: 119 YEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSS 170
|
Length = 501 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 6e-06
Identities = 53/217 (24%), Positives = 87/217 (40%), Gaps = 38/217 (17%)
Query: 632 NPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK--------- 682
L ++L++ G V V G+ G+GKS+LL+ I G++ SG + + G
Sbjct: 19 KRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKR 78
Query: 683 ----AYVAQSPWIQSG---NIEDNIL------------FGKPMDREKYDRVLEACSLKKD 723
A V Q P + IE+N+ R R
Sbjct: 79 ANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRER-------- 130
Query: 724 LEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKE 783
L L G + + +R LSGGQ+Q + + A I L D+ +A+D T + +
Sbjct: 131 LARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMEL 190
Query: 784 VLLGLLRSK-TVIYVTHQVE-FLPAADLILVMKDGKI 818
+ K T + VTH +E L + ++++ GKI
Sbjct: 191 TAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKI 227
|
Length = 263 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 6e-06
Identities = 44/135 (32%), Positives = 62/135 (45%), Gaps = 23/135 (17%)
Query: 684 YVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGI-NL 742
YV P + G + + L K +R K D V+E L+ L+ R I L
Sbjct: 168 YVDLIPKVFKGKVRE--LLKKVDERGKLDEVVERLGLENILD------------RDISEL 213
Query: 743 SGGQKQRIQIARALYQDADIYLFDDPFSAVDAH---TGSHLFKEVLLGLLRSKTVIYVTH 799
SGG+ QR+ IA AL +DAD Y FD+P S +D + L +E L K V+ V H
Sbjct: 214 SGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRE----LAEGKYVLVVEH 269
Query: 800 QVEFLPA-ADLILVM 813
+ L AD + +
Sbjct: 270 DLAVLDYLADNVHIA 284
|
Length = 590 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 7e-06
Identities = 54/212 (25%), Positives = 91/212 (42%), Gaps = 39/212 (18%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------------ 682
L +I+ ++ G VA+ G GSGKS+L+ + SGT+ + G
Sbjct: 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKK 82
Query: 683 -----AYVAQSPWIQ--SGNIEDNILFGKPMD--------REKYDRVLEACSLKKDLEIL 727
+ V Q P Q + ++ FG P + +EK + L+ L +DL
Sbjct: 83 LRKKVSLVFQFPEAQLFENTVLKDVEFG-PKNFGFSEDEAKEKALKWLKKVGLSEDL--- 138
Query: 728 SFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLG 787
I + LSGGQ +R+ IA + + +I D+P + +D + +
Sbjct: 139 -------ISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDY 191
Query: 788 LLRSKTVIYVTHQVEFLPA-ADLILVMKDGKI 818
TVI VTH ++ + AD +LV++ GK+
Sbjct: 192 QKAGHTVILVTHNMDDVAEYADDVLVLEHGKL 223
|
Length = 287 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 7e-06
Identities = 59/217 (27%), Positives = 93/217 (42%), Gaps = 21/217 (9%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQS- 693
+ +I+L V + G G+GKS+LL I G + SG + G PW +
Sbjct: 16 VNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDG-------HPWTRKD 68
Query: 694 ----GN-IEDNILFGKPMDRE--KYDRVLEACSLKKDLEILSFGDQTVIGERGI-NLSGG 745
G+ IE L+ RE K L + E+L+ D T G++ S G
Sbjct: 69 LHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLG 128
Query: 746 QKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTH---QVE 802
KQR+ IA AL + + D+P + +D L + + + TVI +H +V+
Sbjct: 129 MKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQ 188
Query: 803 FLPAADLILVMKDGKITQAGKYNDILNSGTDFMVLVG 839
L AD I ++ +G + GK N N F+ +V
Sbjct: 189 QL--ADHIGIISEGVLGYQGKINKSENLEKLFVEVVK 223
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 7e-06
Identities = 57/190 (30%), Positives = 85/190 (44%), Gaps = 14/190 (7%)
Query: 633 PTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQ 692
LR++NL++ G VAV G G+GK++LL ILG K G K V
Sbjct: 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQ-KGRGEEKYRPDSGKVEVPKNTV 455
Query: 693 SGNI--EDNILFGKPMDREKYDRVLEACSLKKDLEILS---FGDQTVIGERGINLSGGQK 747
S I E FG+ E L +EIL+ D + + LS GQK
Sbjct: 456 SALIPGEYEPEFGEVTILEHLRSKTG--DLNAAVEILNRAGLSDAVLYRRKFSELSTGQK 513
Query: 748 QRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSK--TVIYVTHQVEFLP 805
+R ++A+ L + ++ L D+ + +D T + ++ + L R T+I VTH+ E
Sbjct: 514 ERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARK-ISELAREAGITLIVVTHRPEVGN 572
Query: 806 AAD---LILV 812
A LILV
Sbjct: 573 ALRPDTLILV 582
|
Length = 593 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 9e-06
Identities = 56/222 (25%), Positives = 99/222 (44%), Gaps = 39/222 (17%)
Query: 1087 IVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINIS--SIGLHDLRSRLSIIPQDPTMFEG 1144
++G +G GK+TL++ + + TAG I G +I+ D I+ Q +F
Sbjct: 35 LLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDY----GIVFQSYALFPN 90
Query: 1145 -TVRNN----LDPLEEYKDE---EIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQ 1196
TV +N L + E + E LD L R G+L S GQ
Sbjct: 91 LTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQL-----------SGGQ 139
Query: 1197 RQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSD------CTVITIAH-R 1249
+Q V L R L +L+LDE +A D +++ LR T I + H +
Sbjct: 140 QQRVALARALATSPGLLLLDEPL----SALDARVREHLRTEIRQLQRRLGVTTIMVTHDQ 195
Query: 1250 ITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLVAEY 1291
++ +D +++++HG+IE+ +P ++ + ++ F VA++
Sbjct: 196 EEALSMADRIVVMNHGVIEQVGTPQEIYRHPATPF---VADF 234
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 9e-06
Identities = 56/215 (26%), Positives = 95/215 (44%), Gaps = 43/215 (20%)
Query: 635 LRDINLKVFHG-MRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------AYVA- 686
L D++L V G +RV + G G+GK++++ I G+ G++ GT +A
Sbjct: 18 LNDLSLYVDPGELRV-IIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIAR 76
Query: 687 -------QSPWI-QSGNIEDN-------------ILFGKPMDREKYDRVLEACSLKKDLE 725
Q P + ++ + +N LF + + E+ DR+ E LE
Sbjct: 77 AGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFR-LSAEEKDRIEEV------LE 129
Query: 726 ILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAV-DAHTGSHLFKEV 784
+ D+ LS GQKQ ++I L QD + L D+P + + D T E+
Sbjct: 130 TIGLADE--ADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEET--EKTAEL 185
Query: 785 LLGLLRSKTVIYVTHQVEFLPA-ADLILVMKDGKI 818
L L +V+ V H +EF+ + AD + V+ G +
Sbjct: 186 LKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSV 220
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 1e-05
Identities = 54/229 (23%), Positives = 103/229 (44%), Gaps = 28/229 (12%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS 1130
VL ++ P G ++G +GSGK+TL++ + + T+G I G ++S LH
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVS--RLHARDR 74
Query: 1131 RLSIIPQDPTMFEG-TVRNNLD-----------PLEEYKDEEIWEALDKCQLGDEVRNKE 1178
++ + Q +F TV +N+ P ++ + L+ QL
Sbjct: 75 KVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP 134
Query: 1179 GKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF 1238
+L S GQ+Q V L R L + ++L+LDE ++D +++ LRQ
Sbjct: 135 AQL-----------SGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLH 183
Query: 1239 SDC--TVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENKSSSF 1284
+ T + + H ++ +D V+++S G IE+ +P ++ ++ F
Sbjct: 184 EELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPATRF 232
|
Length = 353 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 59/241 (24%), Positives = 107/241 (44%), Gaps = 38/241 (15%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINI--SSIGLHDL 1128
VL + G I+G +GSGKSTL++ + ++ E T+G++++DG+ + + +
Sbjct: 16 VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLI 75
Query: 1129 R-------SRLSIIPQ----DPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNK 1177
R + + P + MF G +R EE + + E L K L + +
Sbjct: 76 RQEAGMVFQQFYLFPHLTALENVMF-GPLRVRGASKEEAEKQAR-ELLAKVGLAERAHHY 133
Query: 1178 EGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLR-- 1235
+L S GQ+Q V + R L K K+++ DE T+++D L + L+
Sbjct: 134 PSEL-----------SGGQQQRVAIARALAVKPKLMLFDEPTSALDP---ELRHEVLKVM 179
Query: 1236 QHFSD--CTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENKSS----SFAQLV 1288
Q ++ T++ + H I + ++ + G I E P L++N S F Q V
Sbjct: 180 QDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNPPSQRLQEFLQHV 239
Query: 1289 A 1289
+
Sbjct: 240 S 240
|
Length = 240 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 1e-05
Identities = 54/223 (24%), Positives = 93/223 (41%), Gaps = 55/223 (24%)
Query: 636 RDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG---TKAYVAQSPWIQ 692
R+I+L+V G + + G VG+G++ L + G P G + L G AQ +
Sbjct: 280 RNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQR--LA 337
Query: 693 SGNIEDNILFGKPMDREKYDRVLEA------CSL-----------KKDLEIL-------- 727
G L P DR+ L+A C+L ++ +L
Sbjct: 338 RG------LVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALN 391
Query: 728 ---SFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEV 784
+ +Q R LSGG +Q++ IA+ L + + D+P VD + +++
Sbjct: 392 IKFNHAEQAA---RT--LSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQ-- 444
Query: 785 LLGLLRS-----KTVIYVTHQV-EFLPAADLILVMKDGKITQA 821
L+RS V++++ + E AD +LVM G+I+ A
Sbjct: 445 ---LIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGA 484
|
Length = 510 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 1e-05
Identities = 45/199 (22%), Positives = 96/199 (48%), Gaps = 37/199 (18%)
Query: 1087 IVGRTGSGKSTLIQTLFRIVEPTAGEIVIDG--INISSIGLHDLRSRLSIIPQDPTMF-E 1143
++G G+GKSTL++ LF I + +G I+ G I+ S L + +S++ Q+ + +
Sbjct: 29 LMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKS-SKEALENGISMVHQELNLVLQ 87
Query: 1144 GTVRNNL------------DPLEEYKD-EEIWEALDKCQLGDEVRNKEGKLDSRVTENGE 1190
+V +N+ D + Y+D + I++ LD +D R
Sbjct: 88 RSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDI------------DIDPR--AKVA 133
Query: 1191 NWSMGQRQLVCLGRVLLKKSKVLVLDEATASV-DTATDNL--IQQTLRQHFSDCTVITIA 1247
S+ Q Q++ + + +K++++DE T+S+ + ++L I + L++ C ++ I+
Sbjct: 134 TLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKE--RGCGIVYIS 191
Query: 1248 HRITSVID-SDMVLLLSHG 1265
H++ + D + +L G
Sbjct: 192 HKMEEIFQLCDEITILRDG 210
|
Length = 491 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 1e-05
Identities = 52/228 (22%), Positives = 90/228 (39%), Gaps = 45/228 (19%)
Query: 1085 TGIVGRTGSGKSTLIQTLFRIVEP----TAGEIVIDGINISSIGLHDLRSR-LSIIPQDP 1139
+VG +GSGKS + ++ P T+GEI++DG + + +R R ++ I Q+P
Sbjct: 15 LALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLS---IRGRHIATIMQNP 71
Query: 1140 TMFEGTVRNNLDPLEEYKD-----------------EEIWEALDKCQLGDEVRNKEGKLD 1182
R +PL + I EAL+ L + E L
Sbjct: 72 -------RTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGL----PDPEEVLK 120
Query: 1183 SRVTE-NGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLR--QHFS 1239
+ +G M QR ++ L LL + L+ DE T +D + + LR +
Sbjct: 121 KYPFQLSG---GMLQRVMIALA--LLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLF 175
Query: 1240 DCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENKSSSFAQ 1286
++ I H + V +D V ++ G I E + ++ N +
Sbjct: 176 GTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTR 223
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 1e-05
Identities = 58/215 (26%), Positives = 94/215 (43%), Gaps = 52/215 (24%)
Query: 1070 LVLRGLTCTFPG-------------GMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVID 1116
L L+G+ FPG G +VG G+GKST+++ L I AG I+
Sbjct: 5 LQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYL 64
Query: 1117 GINISSIGLHDLR-SRLSIIPQDPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVR 1175
G ++ G + + + II Q+ NL P + E I+ LG E
Sbjct: 65 GKEVTFNGPKSSQEAGIGIIHQEL---------NLIP-QLTIAENIF-------LGREFV 107
Query: 1176 NKEGKLD-------------------SRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLD 1216
N+ G++D S GE S+G++Q+V + +VL +SKV+++D
Sbjct: 108 NRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGE-LSIGEQQMVEIAKVLSFESKVIIMD 166
Query: 1217 EAT-ASVDTATDNLIQQTLRQHFSDCTVITIAHRI 1250
E T A DT T++L + ++ I+HR+
Sbjct: 167 EPTDALTDTETESLFRVIRELKSQGRGIVYISHRL 201
|
Length = 501 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 1e-05
Identities = 59/222 (26%), Positives = 101/222 (45%), Gaps = 48/222 (21%)
Query: 633 PTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQ 692
P + D++ + G + V G +G+G++ L+ + G +P+ SG + L G V +SP Q
Sbjct: 266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDG-HEVVTRSP--Q 322
Query: 693 SGNIEDNILFGKPMDREKYDRVLE------------------ACSLKKDLEILSFGD--- 731
G + + I++ DR++ VL SLK E + D
Sbjct: 323 DG-LANGIVYISE-DRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIR 380
Query: 732 ---------QTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFK 782
+ IG LSGG +Q++ IAR L + + D+P VD G+ K
Sbjct: 381 LFNIKTPSMEQAIG----LLSGGNQQKVAIARGLMTRPKVLILDEPTRGVD--VGAK--K 432
Query: 783 EVLLGLLRSK----TVIYVTHQV-EFLPAADLILVMKDGKIT 819
E+ + + K ++I V+ ++ E L +D ILVM +G+I+
Sbjct: 433 EIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRIS 474
|
Length = 501 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 1e-05
Identities = 60/237 (25%), Positives = 90/237 (37%), Gaps = 46/237 (19%)
Query: 1075 LTCTFPGGMKTGIVGRTGSGKSTLIQTLFRI--VEPTAGEIVIDGINISSIGLHDL-RSR 1131
L+ G +VG G+GKSTL L R+ + P +G I G + + +L R R
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTL---LARMAGLLPGSGSIQFAGQPLEAWSAAELARHR 71
Query: 1132 LSIIPQDPTMFEGTVRNNL-----DPLEEYKDE----EIWEALDKCQLGDEVRNKEGKLD 1182
+ Q F V L D E+ EAL L D KL
Sbjct: 72 AYLSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEAL---GLDD-------KLG 121
Query: 1183 SRVTENGENWSMGQRQLVCLGRVLLK-------KSKVLVLDEATASVDTATDNLIQQTLR 1235
V S G+ Q V L V+L+ ++L+LDE S+D A + + L
Sbjct: 122 RSVN----QLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLS 177
Query: 1236 QHFSDC----TVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLL--ENKSSSFA 1285
+ C V+ +H + + +D V LL G + ++L EN + F
Sbjct: 178 EL---CQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTPENLAQVFG 231
|
Length = 248 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 2e-05
Identities = 44/198 (22%), Positives = 77/198 (38%), Gaps = 30/198 (15%)
Query: 1086 GIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDG--INISS--------IGL-HDLRSRLSI 1134
GI G G+G++ L + LF ++GEI++DG + I S I + R +
Sbjct: 289 GIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGL 348
Query: 1135 IPQDPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLD---SRVTENGEN 1191
+ + N+ L + +D+ + +L +
Sbjct: 349 VLDMS------IAENIT-LASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGT 401
Query: 1192 WSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRIT 1251
S G +Q V L R L KVL+LDE T +D I + +R+ + +
Sbjct: 402 LSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRE-LAAEGKAIL----- 455
Query: 1252 SVIDSDM--VLLLSHGII 1267
+I S++ +L LS I+
Sbjct: 456 -MISSELPELLGLSDRIL 472
|
Length = 500 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 2e-05
Identities = 49/262 (18%), Positives = 106/262 (40%), Gaps = 59/262 (22%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILG--EVPKISGT----LKLCGTKAYVA-- 686
L++I+ + G + + G G+GKS L+ + G + SG + LC YV
Sbjct: 16 LKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERP 75
Query: 687 -----QSPWIQSGNIEDNILFGKPMDREKY-------------------DRVLEAC---- 718
P + + F D+ + D VL+
Sbjct: 76 SKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEAL 135
Query: 719 ---------SLKKDLEILSFGDQTVIGER----GINLSGGQKQRIQIARALYQDADIYLF 765
++ + ++++ + + R +LSGG+KQR+ +AR L ++ ++L
Sbjct: 136 EEIGYEGKEAVGRAVDLI---EMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLA 192
Query: 766 DDPFSAVDAHTGSHLFKEVLLGLLRSK--TVIYVTHQVEFLP-AADLILVMKDGKITQAG 822
D+P +D T + L L +++ +++ +H E + +D + +++G+I + G
Sbjct: 193 DEPTGTLDPQT-AKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIKEEG 251
Query: 823 KYNDILNSGTDFMVLVGAHQQA 844
++++ FM V ++
Sbjct: 252 TPDEVVAV---FMEGVSEVEKE 270
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 39/164 (23%), Positives = 65/164 (39%), Gaps = 31/164 (18%)
Query: 1087 IVGRTGSGKSTLIQTLFRIVEPT---AGEIVIDGINISSIGLHDLRSRLSIIPQDPTMFE 1143
++G +G GKSTL+ + + GE+ ++ + + + ++ I+ QD +F
Sbjct: 33 LMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA--QRQIGILFQDALLFP 90
Query: 1144 G-TVRNNL------DPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQ 1196
+V NL + AL++ LD ++ S GQ
Sbjct: 91 HLSVGQNLLFALPATLKGNARRNAANAALERS-----------GLDGAFHQDPATLSGGQ 139
Query: 1197 RQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSD 1240
R V L R LL + K L+LDE + +D A LR F
Sbjct: 140 RARVALLRALLAQPKALLLDEPFSRLDVA--------LRDQFRQ 175
|
Length = 213 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 55/217 (25%), Positives = 106/217 (48%), Gaps = 17/217 (7%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSG 694
L +++ + G V G G+GKS+ + I G +P SG++++CG V Q+P
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGED--VLQNPKEVQR 75
Query: 695 NI----EDNILFGKPMDREKYDRV------LEACSLKKDL-EILSFGDQTVIGERGIN-L 742
NI E N L+ RE Y + ++ LK+ + E++ + I L
Sbjct: 76 NIGYLPEHNPLYLDMYVRE-YLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQL 134
Query: 743 SGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVE 802
S G +QR+ +A+AL D + + D+P + +D + + + V+ + + KT+I TH ++
Sbjct: 135 SKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEI-RNVIKNIGKDKTIILSTHIMQ 193
Query: 803 FLPA-ADLILVMKDGKITQAGKYNDILNSGTDFMVLV 838
+ A D ++++ GKI K +++ + ++ V
Sbjct: 194 EVEAICDRVIIINKGKIVADKKLDELSAANKKQVIEV 230
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 2e-05
Identities = 52/213 (24%), Positives = 91/213 (42%), Gaps = 51/213 (23%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVI-DGINISSIGLHDLR 1129
+L+ ++ +F G K G++G G+GKSTL++ + + + GE GI +
Sbjct: 22 ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKV--------- 72
Query: 1130 SRLSIIPQDPTMFEG-TVRNN--------LDPLEEYKDEEIWEAL-------DKC----- 1168
+PQ+P + TVR N L+ + EI+ A D
Sbjct: 73 ---GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRF--NEIYAAYAEPDADFDALAAEQG 127
Query: 1169 QLGDEVRNKEG-KLDSRVT------------ENGENWSMGQRQLVCLGRVLLKKSKVLVL 1215
+L + + + LDS++ S G+R+ V L R+LL+K +L+L
Sbjct: 128 ELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLL 187
Query: 1216 DEATASVDTATDNLIQQTLRQHFSDCTVITIAH 1248
DE T +D + ++Q L + TV+ + H
Sbjct: 188 DEPTNHLDAESVAWLEQFLHDY--PGTVVAVTH 218
|
Length = 556 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 3e-05
Identities = 45/174 (25%), Positives = 70/174 (40%), Gaps = 31/174 (17%)
Query: 645 GMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------------AYVAQSPWIQ 692
G + V G G GK++LL + G + SG ++ GT Y+ P ++
Sbjct: 26 GEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLK 85
Query: 693 SG-NIEDNILF----GKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQK 747
+ +N+ F R D L A L E L LS GQ+
Sbjct: 86 PELSALENLHFWAAIHGGAQRTIED-ALAAVGLT-GFEDLPAA----------QLSAGQQ 133
Query: 748 QRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLG-LLRSKTVIYVTHQ 800
+R+ +AR A +++ D+P +A+D G L +L L R V+ THQ
Sbjct: 134 RRLALARLWLSRAPLWILDEPTTALDK-AGVALLAGLLRAHLARGGIVLLTTHQ 186
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (112), Expect = 3e-05
Identities = 60/249 (24%), Positives = 103/249 (41%), Gaps = 51/249 (20%)
Query: 625 AWDISSNNPTLRDINLKV-FHGMRV--------------AVCGTVGSGKSSLLSCILGEV 669
A D+ + P + +NL + F G V ++ G GSGK++ L +
Sbjct: 12 AADVDAAAPAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMN 71
Query: 670 PKISG-------------------TLKLCGTKAYVAQSPWIQSGNIEDNILFG----KPM 706
K+SG L+ + Q P +I DN+L G K +
Sbjct: 72 DKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLV 131
Query: 707 DREKYDRVLEACSLKKDLEILSFGDQTVIGER----GINLSGGQKQRIQIARALYQDADI 762
R+++ V +A + G + +R LSGGQ+Q + +AR L + ++
Sbjct: 132 PRKEFRGVAQA-------RLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEV 184
Query: 763 YLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQV-EFLPAADLILVMKDGKITQA 821
L D+P SA+D T + +E + L TVI VTH + + +D + DG++ +
Sbjct: 185 LLLDEPTSALDPTTTEKI-EEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEE 243
Query: 822 GKYNDILNS 830
G + +S
Sbjct: 244 GPTEQLFSS 252
|
Length = 276 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 3e-05
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 5/87 (5%)
Query: 1075 LTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINI---SSIGLHDLRSR 1131
++ T P G T I+G +G GK+TL++ + + P GEI+ DG NI S L+ +R R
Sbjct: 26 ISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKR 85
Query: 1132 LSIIPQDPTMF-EGTVRNNLD-PLEEY 1156
+S++ Q +F + V +N+ PL E+
Sbjct: 86 MSMLFQSGALFTDMNVFDNVAYPLREH 112
|
Length = 269 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 3e-05
Identities = 44/180 (24%), Positives = 73/180 (40%), Gaps = 39/180 (21%)
Query: 1068 LPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEI-------VIDGINI 1120
LP VLR ++ + G + G +GSGKSTL+++L+ P G+I +D +
Sbjct: 24 LP-VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTA 82
Query: 1121 SSIGLHDLRSR--------LSIIPQDPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGD 1172
+ ++R L +IP+ LD + E +
Sbjct: 83 EPREVLEVRRTTIGYVSQFLRVIPRVSA---------LDVVAEPLLARGVPR-------E 126
Query: 1173 EVRNKEGKLDSRVTENGENWSM-------GQRQLVCLGRVLLKKSKVLVLDEATASVDTA 1225
R K L +R+ WS+ G++Q V + R + +L+LDE TAS+D
Sbjct: 127 VARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDAT 186
|
Length = 235 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 4e-05
Identities = 55/227 (24%), Positives = 104/227 (45%), Gaps = 47/227 (20%)
Query: 1087 IVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDP----TMF 1142
++G +G GK+T+++ + P +G I++DG +I+ + P + T+F
Sbjct: 45 LLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHV------------PAENRHVNTVF 92
Query: 1143 EG-------TVRNNLD--------PLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTE 1187
+ TV N+ P E + EAL QL + + K +L
Sbjct: 93 QSYALFPHMTVFENVAFGLRMQKTPAAEIT-PRVMEALRMVQLEEFAQRKPHQL------ 145
Query: 1188 NGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLR--QHFSDCTVIT 1245
S GQ+Q V + R ++ K KVL+LDE+ +++D +Q L+ Q T +
Sbjct: 146 -----SGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVF 200
Query: 1246 IAH-RITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSF-AQLVAE 1290
+ H + ++ SD ++++ G IE+ +P ++ E + F A+ + E
Sbjct: 201 VTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPKNLFVARFIGE 247
|
Length = 375 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 4e-05
Identities = 44/177 (24%), Positives = 79/177 (44%), Gaps = 15/177 (8%)
Query: 1089 GRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIG---LHDLRSRLSIIPQDPTMFEG- 1144
G +GSGK+TL+ + + G + + G + L LR + I Q +
Sbjct: 38 GPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFL 97
Query: 1145 TVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGR 1204
T R N+ E + ++ + + + G L + N S GQ+Q V + R
Sbjct: 98 TARQNVQMALELQPNLSYQ--EARERARAMLEAVG-LGDHLDYYPHNLSGGQKQRVAIAR 154
Query: 1205 VLLKKSKVLVLDEATASVDTATD----NLIQQTLRQHFSDCTVITIAH--RITSVID 1255
L+ + K+++ DE TA++D+ + L+Q+ R+ CT++ + H RI V D
Sbjct: 155 ALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQ--GCTILIVTHDNRILDVAD 209
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 4e-05
Identities = 57/226 (25%), Positives = 107/226 (47%), Gaps = 43/226 (19%)
Query: 1082 GMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDL----RSRLSIIPQ 1137
G + I+G +G+GKSTL+ + + P +G + ++G + H R +S++ Q
Sbjct: 25 GERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQD------HTTTPPSRRPVSMLFQ 78
Query: 1138 DPTMFEG-TVRNN----LDP---LEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENG 1189
+ +F TV N L+P L + E++ + + D + G+L
Sbjct: 79 ENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQL-------- 130
Query: 1190 ENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDN----LIQQTLRQHFSDCTVIT 1245
S GQRQ V L R L+++ +L+LDE +++D A L+ Q ++ T++
Sbjct: 131 ---SGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQER--QLTLLM 185
Query: 1246 IAHRITSVIDSDMV----LLLSHGIIEEYDSPTKLLENKSSSFAQL 1287
++H S+ D+ + L+++ G I +D PT L + +S + L
Sbjct: 186 VSH---SLEDAARIAPRSLVVADGRI-AWDGPTDELLSGKASASAL 227
|
Length = 232 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 4e-05
Identities = 59/249 (23%), Positives = 106/249 (42%), Gaps = 38/249 (15%)
Query: 1059 NLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDG- 1117
+ Y H L L C P G ++G +G+GKS+L++ L + P +G + I G
Sbjct: 7 GINCFYGAHQALFDITLDC--PEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGN 64
Query: 1118 -INISSI----GLHDLRSRLSIIPQD----PTMFEGTVRNNLDPLEEYKDEEIWEALDKC 1168
+ S + DLR + ++ Q P + TV+ NL EA +
Sbjct: 65 HFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHL---TVQENL-----------IEAPCRV 110
Query: 1169 QLG---DEVRNKEGKLDS--RVTENGENW----SMGQRQLVCLGRVLLKKSKVLVLDEAT 1219
LG D+ + KL R+ + + S GQ+Q V + R L+ + +VL+ DE T
Sbjct: 111 -LGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPT 169
Query: 1220 ASVDTATDNLIQQTLRQ-HFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLL 1277
A++D I +++ + T + + H + + V+ + +G I E +
Sbjct: 170 AALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFT 229
Query: 1278 ENKSSSFAQ 1286
E ++ +F
Sbjct: 230 EPQTEAFKN 238
|
Length = 242 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 4e-05
Identities = 19/31 (61%), Positives = 24/31 (77%)
Query: 743 SGGQKQRIQIARALYQDADIYLFDDPFSAVD 773
SGGQ+QRI IARAL D D+ + D+P SA+D
Sbjct: 156 SGGQRQRIAIARALMLDPDVVVADEPVSALD 186
|
Length = 327 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 4e-05
Identities = 59/286 (20%), Positives = 113/286 (39%), Gaps = 56/286 (19%)
Query: 576 DTISMIIQTKVSLDRIASFLCLDDLQSDVVEK-----HPRGSSETAIEIVDGNF--AWDI 628
DTI +I + + S + DD+ + +V + +P E I++ WD+
Sbjct: 209 DTICVIRDGQHVATKDMSTMSEDDIITMMVGREITSLYPHEPHEIGDVILEARNLTCWDV 268
Query: 629 SSNNPTLR---DINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYV 685
NP + D++ + G + V G VG+G++ L+ + G P ++
Sbjct: 269 I--NPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPG------KFEGNVFI 320
Query: 686 AQSPWIQSGNIEDNILFG---KPMDREKY-----------------------DRVLEACS 719
P + N I G P DR+++ R+ A
Sbjct: 321 NGKP-VDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAE 379
Query: 720 LK------KDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVD 773
L+ + L++ + IG LSGG +Q+ +A+ L + + + D+P VD
Sbjct: 380 LQIIGSAIQRLKVKTASPFLPIG----RLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVD 435
Query: 774 AHTGSHLFKEVLLGLLRSKTVIYVTHQV-EFLPAADLILVMKDGKI 818
++K + +I V+ ++ E L +D +LV+ +GK+
Sbjct: 436 VGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKL 481
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 4e-05
Identities = 29/92 (31%), Positives = 52/92 (56%), Gaps = 4/92 (4%)
Query: 742 LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSK--TVIYVTH 799
LSGG QR+ IA A+ + + D+P +A+D + + E+LL L + + ++ +TH
Sbjct: 154 LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQII-ELLLELQQKENMALVLITH 212
Query: 800 QVEFLP-AADLILVMKDGKITQAGKYNDILNS 830
+ + AA I+VM G++ + GK +DI +
Sbjct: 213 DLALVAEAAHKIIVMYAGQVVETGKAHDIFRA 244
|
Length = 326 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 4e-05
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 743 SGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVE 802
SGG + RI +ARAL+ + D+ L D+P + +D H + L+ E L L KT I V+H E
Sbjct: 346 SGGWRMRIALARALFIEPDLLLLDEPTNHLDLH--AVLWLETYL-LKWPKTFIVVSHARE 402
Query: 803 FLPA--ADLILVMKDGKITQAGKYN 825
FL D++ + +T G Y+
Sbjct: 403 FLNTVVTDILHLHGQKLVTYKGDYD 427
|
Length = 718 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 4e-05
Identities = 66/245 (26%), Positives = 106/245 (43%), Gaps = 45/245 (18%)
Query: 1056 DILNLQVRYAPHLPLV--LRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEI 1113
D+ +L+V ++ V + L + G GIVG +GSGKS QT F ++ A
Sbjct: 14 DVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKS---QTAFALMGLLAANG 70
Query: 1114 VIDG---------INISSIGLHDLRS-RLSIIPQDPTMFEGTVRNNLDP-------LEE- 1155
I G +N+ L+ LR+ ++S+I QDP +L+P L E
Sbjct: 71 RIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPM-------TSLNPYMRVGEQLMEV 123
Query: 1156 ------YKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKK 1209
E +E + ++ D V+ E + R+ +S G RQ V + LL +
Sbjct: 124 LMLHKGMSKAEAFE--ESVRMLDAVKMPEAR--KRMKMYPHEFSGGMRQRVMIAMALLCR 179
Query: 1210 SKVLVLDEATASVDTATDNLIQQ---TLRQHFSDCTVITIAHRITSVIDS-DMVLLLSHG 1265
K+L+ DE T ++D I L++ F + +I I H + V D VL++ G
Sbjct: 180 PKLLIADEPTTALDVTVQAQIMTLLNELKREF-NTAIIMITHDLGVVAGICDKVLVMYAG 238
Query: 1266 IIEEY 1270
EY
Sbjct: 239 RTMEY 243
|
Length = 330 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 5e-05
Identities = 57/225 (25%), Positives = 104/225 (46%), Gaps = 28/225 (12%)
Query: 633 PTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQS--PW 690
L D+NL + G A G GSGKS+++ + G G++++ T + S
Sbjct: 21 RALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLI-TSTSKNKD 79
Query: 691 IQSGNIEDNILFGKPMDREKYDRVLEACSL--------KKDLEILSFGDQTVIG------ 736
I+ + ++F P + + VL+ + +++ E L+ ++G
Sbjct: 80 IKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLF 139
Query: 737 ERG-INLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHL---FKEV-LLGLLRS 791
E+ LSGGQ +R+ IA L + I + D+P + +D L FK++ G+
Sbjct: 140 EKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGM--- 196
Query: 792 KTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDILNSGTDFM 835
T++ VTH ++ + AD + V++ GK+ +GK DI DF+
Sbjct: 197 -TIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQD-VDFL 239
|
Length = 280 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 5e-05
Identities = 53/253 (20%), Positives = 104/253 (41%), Gaps = 60/253 (23%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------- 681
L ++ +V G + + G G+GKS+LL+ + G SG+++ G
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG-SGSIQFAGQPLEAWSATELARH 73
Query: 682 KAYVAQSPWIQSGNIEDNILFGKPM---------DREKYDRVLEACSLKKDLEILSFGDQ 732
+AY++Q + F P+ D+ + + + + L+ D+
Sbjct: 74 RAYLSQ---------QQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGA------LALDDK 118
Query: 733 TVIGERGIN-LSGGQKQRIQIARALYQ-------DADIYLFDDPFSAVDAHTGSHLFKEV 784
R N LSGG+ QR+++A + Q + L D+P +++D S L + +
Sbjct: 119 L---GRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDR-L 174
Query: 785 LLGLLRS-KTVIYVTHQVEF-LPAADLILVMKDGKITQAGKYNDILNS-------GTDFM 835
L L + ++ +H + L A ++K GK+ +G+ ++L G +F
Sbjct: 175 LSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTPPVLAQAYGMNFR 234
Query: 836 VL-VGAHQQALSA 847
L + H +S
Sbjct: 235 RLDIEGHPMLIST 247
|
Length = 248 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 7e-05
Identities = 56/218 (25%), Positives = 93/218 (42%), Gaps = 49/218 (22%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVP---KIS------GTLKLCGTKAY 684
L +++L + G VA+ G G GKS+L ++G E P +S L KA+
Sbjct: 28 LNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAF 87
Query: 685 ------VAQSPWIQSGNIEDNI--LFGKPM-------DREKYDRV---LEACSLKKDLEI 726
V Q I + N + + +P+ E+ R L A L D +
Sbjct: 88 RRDIQMVFQDS-ISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDL--DDSV 144
Query: 727 LSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLL 786
L +R LSGGQ QR+ +ARAL + + + D+ S +D + + + LL
Sbjct: 145 LD--------KRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIR--LL 194
Query: 787 GLLRSKT---VIYVTHQ---VEFLPAADLILVMKDGKI 818
L+ + +++TH VE ++VM +G+I
Sbjct: 195 KKLQQQFGTACLFITHDLRLVERF--CQRVMVMDNGQI 230
|
Length = 268 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 7e-05
Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 16/89 (17%)
Query: 743 SGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKT------VIY 796
SGG +QR+QIAR L + D+P +D + LL LLR V+
Sbjct: 153 SGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQAR-----LLDLLRGLVRELGLAVVI 207
Query: 797 VTHQ---VEFLPAADLILVMKDGKITQAG 822
VTH L A +LVMK G++ ++G
Sbjct: 208 VTHDLAVARLL--AHRLLVMKQGRVVESG 234
|
Length = 258 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 8e-05
Identities = 26/86 (30%), Positives = 50/86 (58%), Gaps = 3/86 (3%)
Query: 732 QTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-- 789
+T++G LSGGQKQRI IARA+ ++ I + D+ S++D + +L ++ + L
Sbjct: 570 ETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLD-NKSEYLVQKTINNLKGN 628
Query: 790 RSKTVIYVTHQVEFLPAADLILVMKD 815
++ I + H++ + A+ I V+ +
Sbjct: 629 ENRITIIIAHRLSTIRYANTIFVLSN 654
|
Length = 1466 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 8e-05
Identities = 59/220 (26%), Positives = 90/220 (40%), Gaps = 55/220 (25%)
Query: 650 VCGTVG---SGKSSLLSCILGEVPKISGTLKLCGT-------KAY---VA----QSPWIQ 692
V G +G SGKS+LL + P G + L KA+ VA Q P +
Sbjct: 39 VTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAE 98
Query: 693 SGNIEDNILFGK-----------PMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGIN 741
+ + + G+ DREK + + LK + V +
Sbjct: 99 GMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLK------PLAHRLVD-----S 147
Query: 742 LSGGQKQRIQIARALYQDADIYLFDDPFSAVD-AHTGSHLFKEVL-----LGLLRSKTVI 795
LSGG++QR IA + QD+ L D+P SA+D AH +VL L R TVI
Sbjct: 148 LSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQ-----VDVLALVHRLSQERGLTVI 202
Query: 796 YVTHQVEFLPAA---DLILVMKDGKITQAGKYNDILNSGT 832
V H + AA D ++ ++ G++ G +++ T
Sbjct: 203 AVLHDINM--AARYCDYLVALRGGEMIAQGTPAELMRGET 240
|
Length = 265 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 8e-05
Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 6/103 (5%)
Query: 732 QTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLR- 790
QT++ LSGG +QR+ IA AL + + D+P +A+D + + + L+ +L+
Sbjct: 159 QTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQ--LIKVLQK 216
Query: 791 --SKTVIYVTHQVEFLP-AADLILVMKDGKITQAGKYNDILNS 830
S VI++TH + + AD +LVM G+ + G I ++
Sbjct: 217 EMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQIFHA 259
|
Length = 623 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 8e-05
Identities = 51/213 (23%), Positives = 87/213 (40%), Gaps = 40/213 (18%)
Query: 633 PTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQ 692
L+ I+ + G V G G+GK++ L + G + SG +++ G V PW +
Sbjct: 35 EALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAG---LV---PWKR 88
Query: 693 SGNIEDNI--LFGK---------PMD-----REKYD--------RVLEACSLKKDLEILS 728
I +FG+ +D YD R+ E L L++
Sbjct: 89 RKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSEL---LDLEE 145
Query: 729 FGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL-LG 787
D V R LS GQ+ R +IA AL + +I D+P +D ++ +
Sbjct: 146 LLDTPV---R--QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYN 200
Query: 788 LLRSKTVIYVTHQVEFLPA-ADLILVMKDGKIT 819
R TV+ +H ++ + A A +LV+ G++
Sbjct: 201 RERGTTVLLTSHYMKDIEALARRVLVIDKGRLL 233
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 8e-05
Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 14/130 (10%)
Query: 648 VAVCGTVGSGKSSLLSCILGEV-PKISGTLKLCGTKAYVAQSPWI---QSGNIEDNILFG 703
+ + G G GK++ + + G + P T +Y Q +I G + D +L
Sbjct: 28 IGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQ--YIKADYEGTVRD-LLSS 84
Query: 704 KPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIY 763
++ Y + K L+I D+ V LSGG+ QR+ IA L +DADIY
Sbjct: 85 I--TKDFYTHPYFKTEIAKPLQIEQILDREVP-----ELSGGELQRVAIAACLSKDADIY 137
Query: 764 LFDDPFSAVD 773
L D+P + +D
Sbjct: 138 LLDEPSAYLD 147
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 8e-05
Identities = 43/192 (22%), Positives = 78/192 (40%), Gaps = 22/192 (11%)
Query: 1087 IVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDL-RSRLSIIPQDPTMFEGT 1145
+VG G+GKSTL+ + + +G I G + + +L R R + Q F
Sbjct: 30 LVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMP 88
Query: 1146 VRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRV 1205
V + L + D+ E L+ +V LD ++ + S G+ Q V L V
Sbjct: 89 VWHYLTLHQP--DKTRTELLN------DVAGALA-LDDKLGRSTNQLSGGEWQRVRLAAV 139
Query: 1206 LLK-------KSKVLVLDEATASVDTATDNLIQQTLRQHF--SDCTVITIAHRITSVI-D 1255
+L+ ++L+LDE S+D A + + + L ++ +H + +
Sbjct: 140 VLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLL-SALCQQGLAIVMSSHDLNHTLRH 198
Query: 1256 SDMVLLLSHGII 1267
+ LL G +
Sbjct: 199 AHRAWLLKRGKL 210
|
Length = 248 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 9e-05
Identities = 46/173 (26%), Positives = 76/173 (43%), Gaps = 46/173 (26%)
Query: 1075 LTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDG--------INISSIGLH 1126
L C P G ++G +G+GKS+L++ L + P +G + I G + +I
Sbjct: 23 LDC--PQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE- 79
Query: 1127 DLRSRLSIIPQD----PTMFEGTVRNNLDPLEEYKDEEIWEA------LDKCQLGDEVRN 1176
LR + ++ Q P + TV+ NL EA L K D+
Sbjct: 80 -LRRNVGMVFQQYNLWPHL---TVQQNL-----------IEAPCRVLGLSK----DQALA 120
Query: 1177 KEGKLDSR--VTENGENW----SMGQRQLVCLGRVLLKKSKVLVLDEATASVD 1223
+ KL R + + + S GQ+Q V + R L+ + +VL+ DE TA++D
Sbjct: 121 RAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALD 173
|
Length = 242 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (111), Expect = 9e-05
Identities = 18/31 (58%), Positives = 24/31 (77%), Gaps = 1/31 (3%)
Query: 741 NLSGGQKQRIQIARALYQDADIYLFDDPFSA 771
+LSGG+ QR+ IA L +DAD+YL D+P SA
Sbjct: 453 DLSGGELQRVAIAACLSRDADLYLLDEP-SA 482
|
Length = 590 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 1e-04
Identities = 56/269 (20%), Positives = 105/269 (39%), Gaps = 55/269 (20%)
Query: 1059 NLQVRYAPHLPL---VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEI-- 1113
N+ + LP L ++ G I+G+TGSGK+T I+ L ++ P G I
Sbjct: 7 NIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEW 66
Query: 1114 ----------------VIDGINISSI------GLHDLRSRLSIIPQ--DPTMFEGTVRNN 1149
V++ + I + ++R R+ ++ Q + +FE T+ +
Sbjct: 67 IFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKD 126
Query: 1150 L--DPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLL 1207
+ P+ +E EA + + G +S + + S GQ++ V L +L
Sbjct: 127 IIFGPVSMGVSKE--EAK---KRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILA 181
Query: 1208 KKSKVLVLDEATASVDTA-TDNLIQQTLRQHFSDCTVITIAHRITSVID-SDMVLLLSHG 1265
+ LV DE TA +D +++ + T+I + H + +V++ + + G
Sbjct: 182 MEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDG 241
Query: 1266 -----------------IIEEYDSPTKLL 1277
+IE P KLL
Sbjct: 242 KIIKDGDTYDILSDNKFLIENNMEPPKLL 270
|
Length = 305 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 1e-04
Identities = 17/33 (51%), Positives = 25/33 (75%)
Query: 741 NLSGGQKQRIQIARALYQDADIYLFDDPFSAVD 773
LSGG+ QR+ IA AL ++AD+YL D+P + +D
Sbjct: 455 ELSGGELQRVAIAAALSREADLYLLDEPSAYLD 487
|
Length = 591 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 1e-04
Identities = 54/217 (24%), Positives = 85/217 (39%), Gaps = 63/217 (29%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLC-GTK-AYVAQSPWIQ 692
L+DI+L F G ++ V G G+GKS+LL + G + G + G K Y+ Q P +
Sbjct: 23 LKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLD 82
Query: 693 S-----GNIED---------------NILFGKPMDREKYDRVLE-------------ACS 719
N+E+ + +P +D + A
Sbjct: 83 PEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDA--DFDALAAEQGELQEIIDAADAWD 140
Query: 720 LKKDLEI------LSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVD 773
L LEI D V LSGG+++R+ + R L + D+ L D+P + +D
Sbjct: 141 LDSQLEIAMDALRCPPWDAKVT-----KLSGGERRRVALCRLLLEKPDMLLLDEPTNHLD 195
Query: 774 AHTGS----HL--FKEVLLGLLRSKTVIYVTHQVEFL 804
A + + L + G TV+ VTH FL
Sbjct: 196 AESVAWLEQFLHDYP----G-----TVVAVTHDRYFL 223
|
Length = 556 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 2e-04
Identities = 62/273 (22%), Positives = 108/273 (39%), Gaps = 56/273 (20%)
Query: 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRI------VE 1107
+ L++ ++G++ G +VG +GSGKS ++ +
Sbjct: 8 SIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAH 67
Query: 1108 PTAGEIVIDGINI---SSIGLHDLR-SRLSIIPQDPTMFEGTVRNNLDPL--------EE 1155
P+ G I+ DG ++ S L +R +++ +I Q+P M +L+PL E
Sbjct: 68 PS-GSILFDGEDLLAASERQLRGVRGNKIGMIFQEP-M------TSLNPLHTIGKQLAEV 119
Query: 1156 YK----------DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRV 1205
+ E L+ + E +LD+ E S GQRQ V +
Sbjct: 120 LRLHRGLSRAAARARALELLELVGI----PEPEKRLDAYPHE----LSGGQRQRVMIAMA 171
Query: 1206 LLKKSKVLVLDEATASVDTATDNLIQQTLR--QHFSDCTVITIAHRITSVID-SDMVLLL 1262
L + +L+ DE T ++D I L+ Q ++ I H + V +D V ++
Sbjct: 172 LANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVM 231
Query: 1263 SHG-IIEEYDSPTKLLENKSSSFAQLVAEYTQR 1294
HG I+E T+ L FA YT++
Sbjct: 232 QHGEIVET--GTTETL------FAAPQHPYTRK 256
|
Length = 534 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 2e-04
Identities = 50/197 (25%), Positives = 91/197 (46%), Gaps = 24/197 (12%)
Query: 1086 GIVGRTGSGKSTLIQTLFRIVEPT-AGEIVIDG--INISSIGLHDLRSRLSIIPQD---- 1138
G+ G G+G++ L+Q LF G + I+G ++I + +R+ ++++P+D
Sbjct: 290 GVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNP-AQAIRAGIAMVPEDRKRH 348
Query: 1139 ---PTMFEGTVRN-NLDPLEEY-KDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWS 1193
P + G +N L L+ + I A + +G ++ + K S G S
Sbjct: 349 GIVPIL--GVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIG-RLS 405
Query: 1194 MGQRQLVCLGRVLLKKSKVLVLDEATASVDTATD----NLIQQTLRQHFSDCTVITIAHR 1249
G +Q L ++LL +VL+LDE T VD LI Q ++ + +I ++
Sbjct: 406 GGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVA---IIVVSSE 462
Query: 1250 ITSVID-SDMVLLLSHG 1265
+ V+ SD VL++ G
Sbjct: 463 LAEVLGLSDRVLVIGEG 479
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 62/242 (25%), Positives = 103/242 (42%), Gaps = 49/242 (20%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLF-RIVEPTA-------GEIVIDGINISS 1122
+LR L+ G T ++GR G+GKSTL++ L + A G++ ++G +++
Sbjct: 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAA 75
Query: 1123 IGLHDLRSRLSIIPQ--DPTMFEGTVRNNLDPLEEY-----------KDEEI-WEALDKC 1168
I L +++PQ P F + R + L Y +D EI W+AL
Sbjct: 76 IDAPRLARLRAVLPQAAQPA-FAFSAR-EIVLLGRYPHARRAGALTHRDGEIAWQALA-- 131
Query: 1169 QLGDEVRNKEGKLDSR-VTENGENWSMGQRQLVCLGRVLLK---------KSKVLVLDEA 1218
L R VT S G+ V RVL + + L+LDE
Sbjct: 132 ------LAGATALVGRDVT----TLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEP 181
Query: 1219 TASVDTATDNLIQQTLRQHFSD--CTVITIAHRIT-SVIDSDMVLLLSHGIIEEYDSPTK 1275
TA++D A + + T+R+ D V+ I H + +D + +L+ G I + +P
Sbjct: 182 TAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPAD 241
Query: 1276 LL 1277
+L
Sbjct: 242 VL 243
|
Length = 272 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 742 LSGGQKQRIQIARAL----YQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYV 797
LSGG+K+ +A L + +Y+ D+ +D G L + +L L++ VI +
Sbjct: 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVI 137
Query: 798 THQVEFLPAADLILVMK 814
TH E AD ++ +K
Sbjct: 138 THLPELAELADKLIHIK 154
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 3e-04
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEI- 1113
+++ NL Y L +L+ ++ T G + G+VGR G+GKSTL++ + +EP G +
Sbjct: 1 IELENLSKTYGGKL--LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVT 58
Query: 1114 VIDGINIS 1121
+ I
Sbjct: 59 WGSTVKIG 66
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 3e-04
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 9/105 (8%)
Query: 735 IGERGINLSGGQKQRIQIARALY---QDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRS 791
+G+ +LS +K I+IA+ LY + ++L D+ +++D S L ++ +
Sbjct: 1693 LGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLG 1752
Query: 792 KTVIYVTHQVEFLPAADLILVM------KDGKITQAGKYNDILNS 830
+VIY+ H L AD ++ M GKI +G DI S
Sbjct: 1753 HSVIYIDHDPALLKQADYLIEMGPGSGKTGGKILFSGPPKDISAS 1797
|
Length = 1809 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 4e-04
Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 6/93 (6%)
Query: 742 LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSK---TVIYVT 798
L+ GQKQR+ +ARAL + + D+ +++D S L L+ L+ K + IYVT
Sbjct: 150 LAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLIN--LMLELQEKQGISYIYVT 207
Query: 799 HQVEFLP-AADLILVMKDGKITQAGKYNDILNS 830
+ + +D +LVM G++ + G D+L S
Sbjct: 208 QHLGMMKHISDQVLVMHQGEVVERGSTADVLAS 240
|
Length = 267 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 4e-04
Identities = 52/193 (26%), Positives = 82/193 (42%), Gaps = 44/193 (22%)
Query: 1070 LVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLR 1129
L++ L+ P G G++G G+GKSTL + + +P +G I I G +
Sbjct: 336 LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKI-GETV--------- 385
Query: 1130 SRLSIIPQDPTMFEGTVRNNLDPLEEYKDEEIWEA----LDKCQLGDEVRN--------- 1176
+L+ + Q R+ LDP ++ +WE LD QLG
Sbjct: 386 -KLAYVDQS--------RDALDP-----NKTVWEEISGGLDIIQLGKREVPSRAYVGRFN 431
Query: 1177 -KEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLR 1235
K +V + S G+R V L + L VL+LDE T +D T +++ L
Sbjct: 432 FKGSDQQKKVGQ----LSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEAL- 486
Query: 1236 QHFSDCTVITIAH 1248
F+ C V+ I+H
Sbjct: 487 LEFAGCAVV-ISH 498
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 4e-04
Identities = 53/208 (25%), Positives = 97/208 (46%), Gaps = 34/208 (16%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSP----- 689
L L V+ G +A+ G G+GKS+++ + G + +G++ G K P
Sbjct: 20 LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLG-KEVTFNGPKSSQE 78
Query: 690 -----------WIQSGNIEDNILFGK----PMDREKYDRVL-EACSLKKDLEILSFGDQT 733
I I +NI G+ R + ++ EA L L L F
Sbjct: 79 AGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLN-LRFSSDK 137
Query: 734 VIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAV-DAHTGSHLFKEVLLGLLRSK 792
++GE LS G++Q ++IA+ L ++ + + D+P A+ D T S LF+ ++ L+S+
Sbjct: 138 LVGE----LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETES-LFR--VIRELKSQ 190
Query: 793 T--VIYVTHQV-EFLPAADLILVMKDGK 817
++Y++H++ E D + V +DG+
Sbjct: 191 GRGIVYISHRLKEIFEICDDVTVFRDGQ 218
|
Length = 501 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 6e-04
Identities = 54/218 (24%), Positives = 91/218 (41%), Gaps = 21/218 (9%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLF--RIVEPTAGEIVIDGINISSIGLHDL 1128
+L+G+ T G I+G GSGKSTL +T+ E T+G I+ G ++ + D
Sbjct: 15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLEL-EPDE 73
Query: 1129 RSRLSII--PQDPTMFEG-TVRNNL-DPLEEYKDEEIWEALDKCQLGDEVRNKEGKLD-- 1182
R+R + Q P G + L L + E LD ++ K L
Sbjct: 74 RARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMD 133
Query: 1183 ----SRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDT----ATDNLIQQTL 1234
+R G +S G+++ + ++ L + K+ +LDE + +D I +
Sbjct: 134 EEFLNRSVNEG--FSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLR 191
Query: 1235 RQHFSDCTVITIAHRITSVIDSDMVLLLSHG-IIEEYD 1271
S +IT R+ + I D V +L G I++ D
Sbjct: 192 EPDRSFL-IITHYQRLLNYIKPDYVHVLLDGRIVKSGD 228
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 7e-04
Identities = 55/222 (24%), Positives = 102/222 (45%), Gaps = 18/222 (8%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK--AY-------- 684
LR ++ ++ +V + G GSGKS+LL + V G +++ G + AY
Sbjct: 1326 LRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQ 1385
Query: 685 ---VAQSPWIQSGNIEDNI-LFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGI 740
+ Q P + G + N+ F + E + LE L++ + S G + + E G
Sbjct: 1386 FSMIPQDPVLFDGTVRQNVDPFLEASSAEVW-AALELVGLRERVASESEGIDSRVLEGGS 1444
Query: 741 NLSGGQKQRIQIARALYQ-DADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTH 799
N S GQ+Q + +ARAL + + L D+ + +D + ++ + TVI + H
Sbjct: 1445 NYSVGQRQLMCMARALLKKGSGFILMDEATANID-PALDRQIQATVMSAFSAYTVITIAH 1503
Query: 800 QVEFLPAADLILVMKDGKITQAGKYND-ILNSGTDFMVLVGA 840
++ + D I+VM G + + G + ++N + F +V A
Sbjct: 1504 RLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEA 1545
|
Length = 1560 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 7e-04
Identities = 54/217 (24%), Positives = 90/217 (41%), Gaps = 28/217 (12%)
Query: 636 RDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWI---- 691
++ +++ G A+ G G GKS+LL + + G + L G S +
Sbjct: 24 ENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83
Query: 692 ----QSGNIEDNILFGKPMDREKYDRVLEACSLKKDLE-----------ILSFGDQTVIG 736
Q+ +I + + R +Y +K+ E I DQ+V
Sbjct: 84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVD- 142
Query: 737 ERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSK--TV 794
LSGGQ+QR IA L Q+ I L D+P + +D L E+L L R K T+
Sbjct: 143 ----TLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLL-ELLSELNREKGYTL 197
Query: 795 IYVTHQV-EFLPAADLILVMKDGKITQAGKYNDILNS 830
V H + + A ++ +++GKI G +I+ +
Sbjct: 198 AAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVTA 234
|
Length = 265 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 7e-04
Identities = 35/189 (18%), Positives = 53/189 (28%), Gaps = 60/189 (31%)
Query: 1084 KTGIVGRTGSGKSTLIQTLFRIVEPT-AGEIVIDGINISSIGLHDLRSRLSIIPQDPTMF 1142
IVG GSGK+TL + L R + P G I IDG +I L L + +
Sbjct: 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSG 63
Query: 1143 EGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCL 1202
E + R L
Sbjct: 64 E--------------------------------------------------LRLRLA--L 71
Query: 1203 GRVLLKKSKVLVLDEATASVDTATDNLIQQTLR-------QHFSDCTVITIAHRITSVID 1255
K VL+LDE T+ +D + L+ + + TVI + +
Sbjct: 72 ALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGP 131
Query: 1256 SDMVLLLSH 1264
+ +
Sbjct: 132 ALLRRRFDR 140
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 8e-04
Identities = 52/221 (23%), Positives = 93/221 (42%), Gaps = 40/221 (18%)
Query: 637 DINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG---TKAYVAQ------ 687
+ L+++ G + V G G GKS+ I+G V G + G +
Sbjct: 39 GVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRS 98
Query: 688 -------------SPWIQSGNI--EDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQ 732
+P + G I E + + R++ ++A LK L
Sbjct: 99 DIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLL------P 152
Query: 733 TVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGS---HLFKEVL--LG 787
+I SGGQ QRI IARAL + + + D+P SA+D + +L +++ +G
Sbjct: 153 NLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMG 212
Query: 788 LLRSKTVIYVTHQVEFLP-AADLILVMKDGKITQAGKYNDI 827
L ++I++ H + + +D +LVM G + G Y+++
Sbjct: 213 L----SLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEV 249
|
Length = 331 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 8e-04
Identities = 44/164 (26%), Positives = 67/164 (40%), Gaps = 49/164 (29%)
Query: 637 DINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK--AYVAQSPWIQSG 694
D++ K+ G V V G G+GKS+L I G+ SGT+K+ T AYV QS
Sbjct: 340 DLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQS------ 393
Query: 695 NIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFG-DQTVIGERGIN------------ 741
R+ D K E +S G D +G+R +
Sbjct: 394 -------------RDALD------PNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKG 434
Query: 742 ---------LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHT 776
LSGG++ R+ +A+ L ++ L D+P + +D T
Sbjct: 435 SDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVET 478
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 9e-04
Identities = 51/189 (26%), Positives = 91/189 (48%), Gaps = 44/189 (23%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK---AYVAQSPWI 691
++D + +V G ++A+ G G GK++LL +LG++ SG + CGTK AY Q
Sbjct: 335 VKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIH-CGTKLEVAYFDQ---- 389
Query: 692 QSGNIEDNILFGKPMDREK--YDRVLEACSLKKDLEILSFGDQTVIG---------ERGI 740
+D EK D + E K+++ + + + V+G +R +
Sbjct: 390 ----------HRAELDPEKTVMDNLAEG---KQEVMV-NGRPRHVLGYLQDFLFHPKRAM 435
Query: 741 N----LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRS--KTV 794
LSGG++ R+ +AR + +++ + D+P + +D T E+L LL S TV
Sbjct: 436 TPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVET-----LELLEELLDSYQGTV 490
Query: 795 IYVTHQVEF 803
+ V+H +F
Sbjct: 491 LLVSHDRQF 499
|
Length = 635 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.001
Identities = 53/233 (22%), Positives = 89/233 (38%), Gaps = 46/233 (19%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS 1130
L + T G ++G +G GK+TL+ + V G I +DG +
Sbjct: 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVE--------- 66
Query: 1131 RLSIIPQDPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLG--------DEVRNKEGKLD 1182
P G V N + L +++ D G + ++
Sbjct: 67 -------GPGAERGVVFQN-EGLLPWRN-----VQDNVAFGLQLAGVEKMQRLEIAHQML 113
Query: 1183 SRVTENGEN----W--SMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQ 1236
+V G W S GQRQ V + R L ++L+LDE ++D T +Q L +
Sbjct: 114 KKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLK 173
Query: 1237 --HFSDCTVITIAHRI-TSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQ 1286
+ V+ I H I +V + ++LLS G P +++E +FA+
Sbjct: 174 LWQETGKQVLLITHDIEEAVFMATELVLLSPG-------PGRVVERLPLNFAR 219
|
Length = 255 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.001
Identities = 52/193 (26%), Positives = 84/193 (43%), Gaps = 41/193 (21%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK--AYVAQSPWIQ 692
L D++L++ G + + G G+GKS+L+ +LG V G +K G YV Q ++
Sbjct: 20 LSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYL- 78
Query: 693 SGNIEDNILFGKPMDREKYDR---------VLEACSLKKDLEILSFGDQTVIGERGINLS 743
D L P+ ++ R +L A + ++ Q LS
Sbjct: 79 -----DTTL---PLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQ--------KLS 122
Query: 744 GGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSK---TVIYVTHQ 800
GG+ QR+ +ARAL + + D+P VD + L+ L+ LR + V+ V+H
Sbjct: 123 GGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYD--LIDQLRRELDCAVLMVSH- 179
Query: 801 VEFLPAADLILVM 813
DL LVM
Sbjct: 180 -------DLHLVM 185
|
Length = 251 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 0.001
Identities = 67/276 (24%), Positives = 117/276 (42%), Gaps = 54/276 (19%)
Query: 1051 THGEVDILNLQV--RYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRI--- 1105
T + I NL V R + V+ ++ G +VG +GSGKS ++ R+
Sbjct: 2 TQPLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPS 61
Query: 1106 --VEPTAGEIVIDG---INISSIGLHDLR-SRLSIIPQDPTMFEGTVRNNLDPL------ 1153
V +G+I G ++ S L +R +++++I Q+P + +L+PL
Sbjct: 62 PPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMV-------SLNPLHTLEKQ 114
Query: 1154 ------------EEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVC 1201
E EI LD+ +G +R R+T+ S G+RQ V
Sbjct: 115 LYEVLSLHRGMRREAARGEILNCLDR--VG--IRQAAK----RLTDYPHQLSGGERQRVM 166
Query: 1202 LGRVLLKKSKVLVLDEATASVDTATDNLIQQTLR--QHFSDCTVITIAHRITSVID-SDM 1258
+ LL + ++L+ DE T ++D + I Q LR Q + ++ I H ++ V +D
Sbjct: 167 IAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADR 226
Query: 1259 VLLLSHGIIEEYDSPTKLLENKSSSFAQLVAEYTQR 1294
V ++ +G E + L F+ YTQ+
Sbjct: 227 VAVMQNGRCVEQNRAATL-------FSAPTHPYTQK 255
|
Length = 529 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 0.001
Identities = 56/210 (26%), Positives = 94/210 (44%), Gaps = 22/210 (10%)
Query: 617 IEIVDGNFAWDISSNNPTL-RDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGT 675
I D +F + P L +++N + R+A+ G G GKS++L I GE+ SGT
Sbjct: 509 ISFSDASFGY---PGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGT 565
Query: 676 L-KLCGTKAYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTV 734
+ + + V + ++ N L M R + V E K + SFG V
Sbjct: 566 VFRSAKVRMAVFSQHHVDGLDLSSNPLL--YMMR-CFPGVPEQ---KLRAHLGSFG---V 616
Query: 735 IGERGIN----LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLR 790
G + LSGGQK R+ A+ ++ I L D+P + +D L + + +L
Sbjct: 617 TGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGL---VLF 673
Query: 791 SKTVIYVTHQVEFLPAA-DLILVMKDGKIT 819
V+ V+H + + D + V+ +GK+T
Sbjct: 674 QGGVLMVSHDEHLISGSVDELWVVSEGKVT 703
|
Length = 718 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 0.001
Identities = 51/206 (24%), Positives = 98/206 (47%), Gaps = 29/206 (14%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSC---------ILGEVPKISGTLKLCGTKA-- 683
LR++ G+ A+ G G+GK++L+ I G++ +ISG K T A
Sbjct: 896 LREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDI-RISGFPKKQETFARI 954
Query: 684 --YVAQ----SPWIQSGNIEDNILFGK----PMDREKYDRVLEACSLKKDLEILSFGDQT 733
Y Q SP + + +++++ P + K ++++ + + +E+ + D
Sbjct: 955 SGYCEQNDIHSPQV---TVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKD-A 1010
Query: 734 VIGERGIN-LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSK 792
++G G+ LS Q++R+ IA L + I D+P S +DA + + + V + +
Sbjct: 1011 IVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1070
Query: 793 TVIYVTHQ--VEFLPAADLILVMKDG 816
TV+ HQ ++ A D +L+MK G
Sbjct: 1071 TVVCTIHQPSIDIFEAFDELLLMKRG 1096
|
Length = 1470 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.002
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 1193 SMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLR--QHFSDCTVITIAHRI 1250
S GQ+Q V + R L++++KV++ DE AS+D + ++ TLR TV+ H++
Sbjct: 154 SGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQV 213
|
Length = 262 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.002
Identities = 49/176 (27%), Positives = 73/176 (41%), Gaps = 54/176 (30%)
Query: 1087 IVGRTGSGKSTLIQTLFRIVEPTAGEIVIDG--INISSIGLHDLR-SRLSIIPQDP---- 1139
+VGR G+GKSTL++ L GE+++D I DL +RL QDP
Sbjct: 34 LVGRNGAGKSTLMKIL-------NGEVLLDDGRIIYEQ----DLIVARL---QQDPPRNV 79
Query: 1140 --TMF----EGTVRNNLDPLEEYKD----------EEIWEALDKCQLGDEVRNKEG--KL 1181
T++ EG + + L+ Y D E+ L K Q E + +L
Sbjct: 80 EGTVYDFVAEG-IEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQ---EQLDHHNLWQL 135
Query: 1182 DSRVTENGE-----------NWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTAT 1226
++R+ E + S G + LGR L+ VL+LDE T +D T
Sbjct: 136 ENRINEVLAQLGLDPDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIET 191
|
Length = 635 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.002
Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 19/143 (13%)
Query: 1082 GMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVI-DGINISSIGLHDLRSRLSIIPQDPT 1140
G + G++GR G+GKSTLI+ L + P +GEI + GI + H +L + D +
Sbjct: 338 GSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQH----QLEFLRADES 393
Query: 1141 MFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLV 1200
+ R L P E + +L D + + D +VTE +S G++ +
Sbjct: 394 PLQHLAR--LAPQELEQ-----------KLRDYLGGFGFQGD-KVTEETRRFSGGEKARL 439
Query: 1201 CLGRVLLKKSKVLVLDEATASVD 1223
L ++ ++ +L+LDE T +D
Sbjct: 440 VLALIVWQRPNLLLLDEPTNHLD 462
|
Length = 638 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.003
Identities = 68/254 (26%), Positives = 107/254 (42%), Gaps = 33/254 (12%)
Query: 626 WDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSL---LSCIL----------GEVPKI 672
W + P L+ +NL + G G GKS+L LS +L G+
Sbjct: 8 WFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDY 67
Query: 673 S--GTLKLCGTKAYVAQSP--WIQSGNIEDNILF-----GKPMDREKYDRVLEACSLKKD 723
S G L L A V Q P I +I+ +I F G P E RV EA +L
Sbjct: 68 SKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEA-EITRRVDEALTL--- 123
Query: 724 LEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKE 783
++ F Q + LS GQK+R+ IA AL A L D+P + +D + +
Sbjct: 124 VDAQHFRHQPIQC-----LSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAI 178
Query: 784 VLLGLLRSKTVIYVTHQVEFL-PAADLILVMKDGKITQAGKYNDILNSGTDFMVLVGAHQ 842
+ + + VI +H ++ + +D + V++ G+I G ++ + T+ M G Q
Sbjct: 179 IRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVF-ACTEAMEQAGLTQ 237
Query: 843 QALSALDSIEGGPV 856
L L + G P+
Sbjct: 238 PWLVKLHTQLGLPL 251
|
Length = 271 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.003
Identities = 50/203 (24%), Positives = 93/203 (45%), Gaps = 32/203 (15%)
Query: 1086 GIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDG--INISSIGLHDLRSRLSIIPQDPTMFE 1143
G+ G G+G+S L++ L+ TAG++ +DG I+I S +R+ + + P+D E
Sbjct: 283 GLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPR-DAIRAGIMLCPED-RKAE 340
Query: 1144 G-----TVRNNLD--------PLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGE 1190
G +V +N++ + WEA + D L+ + T + E
Sbjct: 341 GIIPVHSVADNINISARRHHLRAGCLINNR-WEA----ENADRFI---RSLNIK-TPSRE 391
Query: 1191 ----NWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSD-CTVIT 1245
N S G +Q LGR L + KV++LDE T +D + I + + + V+
Sbjct: 392 QLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLF 451
Query: 1246 IAHRITSVID-SDMVLLLSHGII 1267
++ + V+ +D ++++ G I
Sbjct: 452 VSSDLPEVLGVADRIVVMREGRI 474
|
Length = 501 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.003
Identities = 51/205 (24%), Positives = 91/205 (44%), Gaps = 14/205 (6%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPT--AGEIVIDGINISSIGLHDL 1128
+L G+T G ++G +GSGKSTL+ L ++ G I+ + + +
Sbjct: 83 ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK----QI 138
Query: 1129 RSRLSIIPQDPTMFEG-TVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEG--KLDSRV 1185
R + QD ++ TVR L + + +K + + V ++ G K ++ +
Sbjct: 139 LKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTI 198
Query: 1186 TENG--ENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVD-TATDNLIQQTLRQHFSDCT 1242
N S G+R+ V + +L +L+LDE T+ +D TA L+ T
Sbjct: 199 IGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKT 258
Query: 1243 VITIAHRITSVIDS--DMVLLLSHG 1265
++T H+ +S + D VL+LS G
Sbjct: 259 IVTSMHQPSSRVYQMFDSVLVLSEG 283
|
Length = 659 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 0.003
Identities = 37/144 (25%), Positives = 62/144 (43%), Gaps = 33/144 (22%)
Query: 1086 GIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQ----DPTM 1141
GIVG G GK+T + L +++P GE+ + ++S PQ D
Sbjct: 369 GIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKISYKPQYIKPD--- 412
Query: 1142 FEGTVRNNLDPLEEYKDEEIW--EALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQL 1199
++GTV + L + + + E + QL E LD V + S G+ Q
Sbjct: 413 YDGTVEDLLRSITDDLGSSYYKSEIIKPLQL-------ERLLDKNVKD----LSGGELQR 461
Query: 1200 VCLGRVLLKKSKVLVLDEATASVD 1223
V + L + + + +LDE +A +D
Sbjct: 462 VAIAACLSRDADLYLLDEPSAHLD 485
|
Length = 590 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 0.003
Identities = 44/189 (23%), Positives = 82/189 (43%), Gaps = 23/189 (12%)
Query: 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIV 1114
+D++ L Y H +L+ ++ P G + G G+GK+TL++ + ++ P GEI+
Sbjct: 2 LDVIELDFDY--HDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEIL 59
Query: 1115 IDGINISSIGLHDLRSRLSIIPQ----DPTMFEGTVRNN--LDPLEEYKDEEIWEALDKC 1168
+ +I L + +L + +P + T+R N D I E
Sbjct: 60 FERQSIKK-DLCTYQKQLCFVGHRSGINPYL---TLRENCLYDIHFSPGAVGITELCRLF 115
Query: 1169 QLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDN 1228
L + G L S GQ++ V L R+ + K+K+ +LDE ++D +
Sbjct: 116 SLEHLIDYPCGLL-----------SSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLL 164
Query: 1229 LIQQTLRQH 1237
I +++H
Sbjct: 165 TIITKIQEH 173
|
Length = 200 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.004
Identities = 48/193 (24%), Positives = 74/193 (38%), Gaps = 66/193 (34%)
Query: 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIV----EPTA 1110
+ + ++ Y V++G+ G +VG +G GKSTL+ R+V T+
Sbjct: 4 LKLQAVRKSYDGKTQ-VIKGIDLDVADGEFIVLVGPSGCGKSTLL----RMVAGLERITS 58
Query: 1111 GEIVIDG--INISSIGLHDLRSRLSIIPQD-------------PTMFEGTVRNNLDPLEE 1155
GEI I G +N +L P D P M +VR N+
Sbjct: 59 GEIWIGGRVVN-------ELE------PADRDIAMVFQNYALYPHM---SVRENM----A 98
Query: 1156 Y--------KDE---EIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGR 1204
Y K E + EA +L + K +L S GQRQ V +GR
Sbjct: 99 YGLKIRGMPKAEIEERVAEAARILELEPLLDRKPREL-----------SGGQRQRVAMGR 147
Query: 1205 VLLKKSKVLVLDE 1217
++++ V + DE
Sbjct: 148 AIVREPAVFLFDE 160
|
Length = 356 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.004
Identities = 53/204 (25%), Positives = 90/204 (44%), Gaps = 34/204 (16%)
Query: 1086 GIVGRTGSGKSTLIQTLFRIVEPTA--GEIVIDG--INISSIGLHDLRSRLSIIPQD--- 1138
GI G G+G++ L+Q LF P GEI IDG + I + + ++++P+D
Sbjct: 292 GIAGLVGAGRTELVQCLFG-AYPGRWEGEIFIDGKPVKIRNP-QQAIAQGIAMVPEDRKR 349
Query: 1139 ----PTMFEGTVRNN--LDPLEEY-KDEEIWEALDKCQLGDEVRN---KEGKLDSRVTEN 1188
P M V N L L+ + I +A + + + ++ K + +
Sbjct: 350 DGIVPVM---GVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIA-- 404
Query: 1189 GENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATD----NLIQQTLRQHFSDCTVI 1244
S G +Q L + LL K+L+LDE T +D LI Q ++Q + +I
Sbjct: 405 --RLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVA---II 459
Query: 1245 TIAHRITSVID-SDMVLLLSHGII 1267
I+ + V+ SD VL++ G +
Sbjct: 460 VISSELPEVLGLSDRVLVMHEGKL 483
|
Length = 506 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1300 | |||
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-233 Score=2199.17 Aligned_cols=1073 Identities=48% Similarity=0.799 Sum_probs=1003.3
Q ss_pred CCCccCch--hHHHHHHhHHHHHHhcccCCCCCCCCCCCCCCCchhhHHHHHHHHHHHhhhhcCCCccchhHHHHHHHhH
Q 000755 222 TPYSNASL--FSVLTFSWMGSLISLGNKKTLDLEDVPQLDSGDSVVGCFPIFRNKLEANRVEGNKVTAFKLTKALFFSAW 299 (1300)
Q Consensus 222 ~p~~~a~~--~s~~~f~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 299 (1300)
+|.+.++. +|++||||++|++++|||++|+.+|+|+|+++|+++.++++|++.|+++. ++ +.++|+++++++++||
T Consensus 123 ~~~~~~~~~~~S~~~f~W~~~l~~~g~k~~L~~~Dl~~l~~~d~s~~l~~~~~~~w~~~~-~~-~~~~psl~~al~~~f~ 200 (1381)
T KOG0054|consen 123 NPLPEASAGFLSRLTFSWMTPLLRKGYKKPLELKDLWSLSPEDSSETLVKRLESLWEKEL-GR-SGKKPSLLRALLRTFG 200 (1381)
T ss_pred CcccccchhHHHHHHHHHHHHHHHhhccCCCChhhcccCChhhhhhHHHHHHHHHHHHHh-cc-ccCCcHHHHHHHHHHH
Confidence 44455555 99999999999999999999999999999999999999999999999875 22 2257899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 300 KEIVFTAILALLYTLANYVGPYLIDTFVQYLNGEREFKNEGYVLVSTFFVAKIVECLAQRHWMFRLQVAGIKMRSVLVSM 379 (1300)
Q Consensus 300 ~~~~~~~l~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~g~~ir~~L~~~ 379 (1300)
+++++.+++..+...+.+++|++++.+|+++++++...+.||+++++++++.++++++.++|+|..++.|+|+|+++.++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~P~lL~~li~~~~~~~~~~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~~~ 280 (1381)
T KOG0054|consen 201 RTFLLSGIFLFLRDLAGFVGPLLLKKLILFFSEKRLPLNNGYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALISA 280 (1381)
T ss_pred HHHHHHHHHHHHHHHHccccHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHH
Confidence 99999999999999999999999999999999876566789999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCchhhcCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 380 VYNKGLTLSCQAKQSYTSGEIINFMTVDAERIGDFGWYMHDPWLVILQVSLALLILYKNLGLASIAALFATVLIMLTNFP 459 (1300)
Q Consensus 380 Iy~K~L~ls~~~~~~~~~G~Ivnl~s~Dv~~i~~~~~~~~~~~~~~l~i~~~l~lL~~~lg~~~l~~l~~~~l~~~~~~~ 459 (1300)
||+|+|+++..+++.+++|+|+|+|++|++++.++++++|.+|..|+|+++++++||..+|+++++|++++++++|+|.+
T Consensus 281 IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~~h~~w~~Plqi~~~l~lLy~~LG~sa~~G~~~~il~~p~n~~ 360 (1381)
T KOG0054|consen 281 IYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACFLHLLWSAPLQIILALYLLYGLLGPSALAGVAVMVLLIPLNSF 360 (1381)
T ss_pred HHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 460 LGRLQENFQDKLMGSKDKRMKVTSEILRNMRILKLQGWEMKFLSKIIELRKIEAGWLKKFLYTGAMTSFVFWGAPTFVSV 539 (1300)
Q Consensus 460 ~~k~~~~~~~~~~~~~d~r~~~~~E~L~~ir~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~~p~~v~~ 539 (1300)
++++++++|++.|+.+|+|++.++|+|+|||+||+|+||+.|.++|++.|++|++++++..+..+++.+.++++|+++++
T Consensus 361 ~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~lv~~ 440 (1381)
T KOG0054|consen 361 LAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSPVLVSV 440 (1381)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-HhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCCCCCcceEE
Q 000755 540 ATFGACM-LLGIPLESGKILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIASFLCLDDLQSDVVEKHPRGSSETAIE 618 (1300)
Q Consensus 540 ~~f~~~~-~~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~~~~~~~~~~I~ 618 (1300)
++|++|+ ..++.+++..+|+++++|++++.|+..+|+.++.+.|+++|++|+++||..+|.+.+..+..+....+.+|+
T Consensus 441 ~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~~~~~~~~~~i~ 520 (1381)
T KOG0054|consen 441 VTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVERSPDEAGENAIE 520 (1381)
T ss_pred HHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccccccCCCCCCCceEE
Confidence 9999999 778899999999999999999999999999999999999999999999999998876655334445567899
Q ss_pred EEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCeEEEEecCCcCCCCCHHH
Q 000755 619 IVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGNIED 698 (1300)
Q Consensus 619 i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~~ayv~Q~~~l~~~Ti~e 698 (1300)
++|++|+|+++++.++|+||||+|++|+++||||++||||||||++|+||+++.+|++.++|++|||||+||||||||||
T Consensus 521 i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~ngTvre 600 (1381)
T KOG0054|consen 521 IKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNGTVRE 600 (1381)
T ss_pred EeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhCCcHHH
Confidence 99999999976667799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHH
Q 000755 699 NILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGS 778 (1300)
Q Consensus 699 NI~fg~~~~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLARAly~~~~illLDep~saLD~~t~~ 778 (1300)
||+||.|||++||++|+++|+|++|++.||.||+|+|||||.||||||||||+||||+|+|+||||||||+||||+|+++
T Consensus 601 NILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~ 680 (1381)
T KOG0054|consen 601 NILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGK 680 (1381)
T ss_pred hhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHhcCchHHHHHHHHHHHhhh---hcccCCC-
Q 000755 779 HLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSGTDFMVLVGAHQQALSA---LDSIEGG- 854 (1300)
Q Consensus 779 ~i~~~~~~~~l~~~TvIlvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~---~~~~~~~- 854 (1300)
|||++|+++.+++||+|+|||++++|++||+|++|+||+|.+.|+|+|+++.+.+|.++..+.....+. .+..+..
T Consensus 681 ~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 760 (1381)
T KOG0054|consen 681 HIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKSGGDFAELAHEEESEQEEEASEKDLESGE 760 (1381)
T ss_pred HHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHhcchhHHHHhhccchhhccccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999888873322111111 0000000
Q ss_pred --------C-c----cccc----c-ccc-cCCCccccccc----------------------------------------
Q 000755 855 --------P-V----SERI----S-MNK-ENGGMDTTNGV---------------------------------------- 875 (1300)
Q Consensus 855 --------~-~----~~~~----~-~~~-~~~~e~~~~g~---------------------------------------- 875 (1300)
. . ..+. + ..+ ..++|+++.|.
T Consensus 761 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~G~v~~~vY~~Y~~a~~g~~~~~~~~~~~v~~~~~~~~~~~WL 840 (1381)
T KOG0054|consen 761 SSRESESRSLESLSSEEEKSKDEKEEEDKLVQEEERETGKVSWSVYKKYIKAAGGFLLVLLILLLFVLTQVLQIASNYWL 840 (1381)
T ss_pred cccchhhhhhhhhcccccccccccchhhHHHHHHHHhcCEeeHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 0000 0 000 01122223332
Q ss_pred ----------------------------------------------------------------------cccCcc--cc
Q 000755 876 ----------------------------------------------------------------------TMKEGN--ED 883 (1300)
Q Consensus 876 ----------------------------------------------------------------------~lp~gr--nr 883 (1300)
+.|.|| ||
T Consensus 841 s~W~~~~~~~~~~~~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNR 920 (1381)
T KOG0054|consen 841 SYWTDDGEDNGTTTVSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNR 920 (1381)
T ss_pred HHhcCCcccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCCCCccchhhh
Confidence 229999 99
Q ss_pred ccccc--h---------------------------------------------hhhhhhHHHHHHHHHHhhhhhhHHHHH
Q 000755 884 IQTDK--V---------------------------------------------DEQYYIPSARELSRLVGVCKAPVIQHF 916 (1300)
Q Consensus 884 ~s~D~--v---------------------------------------------~~~~y~~~~r~l~rl~~~~~sp~~~~~ 916 (1300)
||+|+ + +++||++++||++|++++++||+++||
T Consensus 921 FSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~ 1000 (1381)
T KOG0054|consen 921 FSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHF 1000 (1381)
T ss_pred cccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhH
Confidence 99999 3 789999999999999999999999999
Q ss_pred HHHhhchHHHHHhcchHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Q 000755 917 SETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFHIAGAMEWLCFRLDMLSSLTFAFSLVLLISIPKGVIEPAIAGLAV 996 (1300)
Q Consensus 917 ~E~l~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~gl~l 996 (1300)
+|+++|+.|||||+++++|.+++..++|.+++++|...+++||+++|+|+++++++.+++++.+..+.+.++||.+|+++
T Consensus 1001 ~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~~~~~~~~g~vGLsl 1080 (1381)
T KOG0054|consen 1001 SETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVLLPSGLISPGLVGLSL 1080 (1381)
T ss_pred HHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988887777668899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccCCCCCCCCCCceEEEEeeeeeeCCCCCcceeeee
Q 000755 997 TYGLNLNMLQAWVIWNLCNLENKIISVERILQYTCISSEPPLVIEESRPDCSWPTHGEVDILNLQVRYAPHLPLVLRGLT 1076 (1300)
Q Consensus 997 ~~~~~~~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~i~~~~v~~~y~~~~~~vL~~is 1076 (1300)
+|+++++..++|++++.+++|+.|+||||+.||+++|+|+|+..+..+||++||++|+|+|+|++++|+++.|+||||||
T Consensus 1081 syal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~lp~VLk~is 1160 (1381)
T KOG0054|consen 1081 SYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPNLPLVLKGIS 1160 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCCCcchhcCce
Confidence 99999999999999999999999999999999999999977777776699999999999999999999999999999999
Q ss_pred EEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEEEcCCCCCCcccHHHhcCCCCCC
Q 000755 1077 CTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEEY 1156 (1300)
Q Consensus 1077 l~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~vpQ~~~lf~gTvr~Nl~~~~~~ 1156 (1300)
|+|+||||||||||||||||||+++|+|+.+|.+|+|.|||+||+++++++||+++++|||||+||+||+|.||||++++
T Consensus 1161 ~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e~ 1240 (1381)
T KOG0054|consen 1161 FTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFDEY 1240 (1381)
T ss_pred EEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHH
Q 000755 1157 KDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQ 1236 (1300)
Q Consensus 1157 ~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~ 1236 (1300)
+|++||+||++|+|++.|+++|+|||++|.|+|.|||.||||++||||||||+++|||||||||++|++||..||++||+
T Consensus 1241 sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~ 1320 (1381)
T KOG0054|consen 1241 SDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIRE 1320 (1381)
T ss_pred CHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCcEEEEEeCChhhhhccCEEEEEeCCEEEEecChhhHHhcCCChHHHHHHHHhhhcc
Q 000755 1237 HFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLVAEYTQRSS 1296 (1300)
Q Consensus 1237 ~~~~~Tvi~iaHrl~~i~~~D~v~vl~~G~i~e~g~~~~l~~~~~~~f~~l~~~~~~~~~ 1296 (1300)
.|++||||+||||++|++|||||+|||+|+|+|+|+|++|+++++|.|++++.++..++.
T Consensus 1321 ~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~~~S~f~~~l~~~~~~~~ 1380 (1381)
T KOG0054|consen 1321 EFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLSDKDSLFSSLLKEAALSSR 1380 (1381)
T ss_pred HhcCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHHHHhCCcchHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999999999887653
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-186 Score=1869.15 Aligned_cols=1258 Identities=33% Similarity=0.541 Sum_probs=1030.6
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccchhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhccc
Q 000755 7 FLLKPAFLRGISGSLHLVLLLGLFVSWVWKKLRVGVSDSEGYKERFKKKSVLRHKLILFCCFAVSVFNLVLCLLDYFSWF 86 (1300)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (1300)
|-||+++.+..++..++++++.....+..++..+.. ..............+.+++|....+++...+... ....
T Consensus 29 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 102 (1622)
T PLN03130 29 YTPCATDSLVINISHLVLLGLCLYRIWLIKKDHKVQ-----RFCLRSKWYNYFLALLAAYCTAEPLFRLVMGISV-LNLD 102 (1622)
T ss_pred CCccHHhhHHHHHHHHHHHHHHHHHHHHhccccccC-----CccccchHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccc
Confidence 779999988888777775444433333332210111 0000111112233445555555555443333332 2222
Q ss_pred CC-CCCcchhhHHHHHHHHHHHHHHHHHHHhhccccCCccccchhHHHHHHHH---HHhhhhhhhhhh-hhhhccccchh
Q 000755 87 GN-DWSGDKLVTLADLVLRTLGWGAICVYLHSQFFNSGQQRFPLLLRLWWGFY---LCLSCYCLVSDI-VLYAQHVSLSV 161 (1300)
Q Consensus 87 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~ 161 (1300)
+. .+.......+...++..+++++.......++. ... .+++.+++||++. .++.++ ... ..+... ...
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~- 175 (1622)
T PLN03130 103 GQTSLPPFEIVSLIVEALTWCSMLVMIGVETKIYI-REF-RWYVRFAVIYVLVGDAVMLNLV---LSVKEYYSSF-VLY- 175 (1622)
T ss_pred cccccccchhHHhHHHHHHHHHHHHHHHHHHHHHH-hcC-CCcceeehhHHHhhHHHHHHHH---HHHHHHHhcc-ccc-
Confidence 21 22223333244445555555555543323332 222 5688999999887 555444 222 222220 011
Q ss_pred hhhHHHHHHHHHHHHHHHhhhccccCCCccccccccccCCCCCCCCCccccccCCCCCCCCCCccCchhHHHHHHhHHHH
Q 000755 162 HYLVSDVVSVISGFVFCYVGFLKRDKGEDTLLLQETLLDGDSSIGNGEVSSIKSRGTDNVTPYSNASLFSVLTFSWMGSL 241 (1300)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~~s~~~f~W~~pl 241 (1300)
.......+++..+++.+ +.+...++.. ...|... +... + .+-++.+...+.+||++||+|||++|+|++|+
T Consensus 176 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~-~~~~-~--~~~~~~~~~~~~~pe~~a~~~s~~~F~W~~pl 246 (1622)
T PLN03130 176 LYISEVAAQVLFGILLL-VYFPNLDPYP----GYTPIGS-ESVD-D--YEYEELPGGEQICPERHANIFSRIFFGWMTPL 246 (1622)
T ss_pred eehhHHHHHHHHHHHHH-HHHhcCCCCc----ccccccc-cccc-c--ccccCCcccCCCCcccccCHHHHHHHHHHHHH
Confidence 12222233333333331 1121111100 1111100 0000 0 00011233467789999999999999999999
Q ss_pred HHhcccCCCCCCCCCCCCCCCchhhHHHHHHHHHHHhhhhcCCCccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 242 ISLGNKKTLDLEDVPQLDSGDSVVGCFPIFRNKLEANRVEGNKVTAFKLTKALFFSAWKEIVFTAILALLYTLANYVGPY 321 (1300)
Q Consensus 242 ~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ 321 (1300)
+++||+++|+.+|||+|+++|+++.++++|++.|+++. +.++++++++++++||+.++..+++.++..++.+++|+
T Consensus 247 ~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~----~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~P~ 322 (1622)
T PLN03130 247 MQLGYKRPLTEKDVWKLDTWDQTETLYRSFQKCWDEEL----KKPKPWLLRALNNSLGGRFWLGGFFKIGNDLSQFVGPL 322 (1622)
T ss_pred HHHHhcCCCChhhccCCChhhhHHHHHHHHHHHHHHHh----ccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998764 22457899999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhcCCCHHHHH
Q 000755 322 LIDTFVQYLNGEREFKNEGYVLVSTFFVAKIVECLAQRHWMFRLQVAGIKMRSVLVSMVYNKGLTLSCQAKQSYTSGEII 401 (1300)
Q Consensus 322 ll~~li~~l~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~g~~ir~~L~~~Iy~K~L~ls~~~~~~~~~G~Iv 401 (1300)
+++.+++++.+.. ....++++++++++..++.+++.+++.+...+++.++|..++..+|+|.++++...+++.++|+++
T Consensus 323 ll~~li~~v~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~i~~k~L~l~~~~~~~~~~G~iv 401 (1622)
T PLN03130 323 LLNLLLESMQNGE-PAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKIT 401 (1622)
T ss_pred HHHHHHHHHhcCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHH
Confidence 9999999997543 223467777766776677777777888888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 402 NFMTVDAERIGDFGWYMHDPWLVILQVSLALLILYKNLGLASIAALFATVLIMLTNFPLGRLQENFQDKLMGSKDKRMKV 481 (1300)
Q Consensus 402 nl~s~Dv~~i~~~~~~~~~~~~~~l~i~~~l~lL~~~lg~~~l~~l~~~~l~~~~~~~~~k~~~~~~~~~~~~~d~r~~~ 481 (1300)
|+|++|++++.+++..+|.+|..|++++++++++|..+|+++++++++++++++++.++.++.++.+++.++.+|+|.+.
T Consensus 402 nl~s~Dv~~i~~~~~~l~~l~~~pl~ii~~~~lL~~~lg~~~l~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~ 481 (1622)
T PLN03130 402 NLMTTDAEALQQICQQLHTLWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGL 481 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988888899999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHH
Q 000755 482 TSEILRNMRILKLQGWEMKFLSKIIELRKIEAGWLKKFLYTGAMTSFVFWGAPTFVSVATFGACMLLGIPLESGKILSAL 561 (1300)
Q Consensus 482 ~~E~L~~ir~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~~p~~v~~~~f~~~~~~~~~Lt~g~vft~l 561 (1300)
++|+++||++||+|+||+.|.+++++.|++|.+..++..+...+..++....|.++++++|++|.+.++.+|++.+|+++
T Consensus 482 ~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fg~~~~~~g~Lt~g~vf~~l 561 (1622)
T PLN03130 482 MNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIPVLVTVVSFGVFTLLGGDLTPARAFTSL 561 (1622)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999988888777777777788888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCCCCCcceEEEEeEEEEecCCCCCCceecceeE
Q 000755 562 ATFRILQEPIYNLPDTISMIIQTKVSLDRIASFLCLDDLQSDVVEKHPRGSSETAIEIVDGNFAWDISSNNPTLRDINLK 641 (1300)
Q Consensus 562 al~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~~~~~~~~~~I~i~~~~fs~~~~~~~~~L~~i~l~ 641 (1300)
++++.+..|+..+|..+..+.++++|++||++|+..+|....... +.......|+++|++|+|+...++++|+|+||+
T Consensus 562 ~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~~~--~~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~ 639 (1622)
T PLN03130 562 SLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLPNP--PLEPGLPAISIKNGYFSWDSKAERPTLSNINLD 639 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCC--cccCCCCceEEEeeEEEccCCCCCceeeceeEE
Confidence 999999999999999999999999999999999987654321111 111122469999999999854457899999999
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhccccCCc-cEEEEcCeEEEEecCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcc
Q 000755 642 VFHGMRVAVCGTVGSGKSSLLSCILGEVPKIS-GTLKLCGTKAYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSL 720 (1300)
Q Consensus 642 i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~-G~i~~~g~~ayv~Q~~~l~~~Ti~eNI~fg~~~~~~~~~~vl~~~~l 720 (1300)
|++|++++|+||+|||||||+++|+|+++|++ |+|.+.++++||+|+||+|++||||||+||+|+|+++|++++++|+|
T Consensus 640 i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L 719 (1622)
T PLN03130 640 VPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTAL 719 (1622)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCc
Confidence 99999999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred hHHHhhccCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecC
Q 000755 721 KKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQ 800 (1300)
Q Consensus 721 ~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~ 800 (1300)
++|++.+|+||+|+|||+|.+|||||||||+||||+|++||||||||||||||++++++++++|+.+.+++||+|+|||+
T Consensus 720 ~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~ 799 (1622)
T PLN03130 720 QHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQ 799 (1622)
T ss_pred HHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999888899999999999
Q ss_pred CCccccCCEEEEEeCCeEEEecChHHHHhcCchHHHHHHHHHHHhhhh----cc----cCCCCccc--------ccc---
Q 000755 801 VEFLPAADLILVMKDGKITQAGKYNDILNSGTDFMVLVGAHQQALSAL----DS----IEGGPVSE--------RIS--- 861 (1300)
Q Consensus 801 ~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~----~~----~~~~~~~~--------~~~--- 861 (1300)
+++++.||+|++|++|+|++.|+|+|+++.++.|..+...+....+.. +. .+..+..+ ...
T Consensus 800 l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 879 (1622)
T PLN03130 800 LHFLSQVDRIILVHEGMIKEEGTYEELSNNGPLFQKLMENAGKMEEYVEENGEEEDDQTSSKPVANGNANNLKKDSSSKK 879 (1622)
T ss_pred HhHHHhCCEEEEEeCCEEEEeCCHHHHHhcchhHHHHHHhcccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999988877877765432100000 00 00000000 000
Q ss_pred cc-----ccCCCccccccc-------------------------------------------------------------
Q 000755 862 MN-----KENGGMDTTNGV------------------------------------------------------------- 875 (1300)
Q Consensus 862 ~~-----~~~~~e~~~~g~------------------------------------------------------------- 875 (1300)
.. ...++|+++.|.
T Consensus 880 ~~~~~~~~~~~~e~~~~g~v~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~i~ 959 (1622)
T PLN03130 880 KSKEGKSVLIKQEERETGVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPKTHGPLFYNLIY 959 (1622)
T ss_pred cccccchhhhhHHHHhcCccCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCchhHHHHHH
Confidence 00 001112222221
Q ss_pred ----------------------------------------------cccCcc--ccccccc--h----------------
Q 000755 876 ----------------------------------------------TMKEGN--EDIQTDK--V---------------- 889 (1300)
Q Consensus 876 ----------------------------------------------~lp~gr--nr~s~D~--v---------------- 889 (1300)
+.|+|| |||++|+ +
T Consensus 960 ~~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~ 1039 (1622)
T PLN03130 960 ALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIF 1039 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 118999 9999998 3
Q ss_pred -----------------------------hhhhhhHHHHHHHHHHhhhhhhHHHHHHHHhhchHHHHHhcchHHHHHHHH
Q 000755 890 -----------------------------DEQYYIPSARELSRLVGVCKAPVIQHFSETISGSTTIRSFDQESRFRDTNM 940 (1300)
Q Consensus 890 -----------------------------~~~~y~~~~r~l~rl~~~~~sp~~~~~~E~l~G~~tIraf~~e~~f~~~~~ 940 (1300)
++.+|.+++|+++|++..+++|+++|+.|+++|+.|||+|+++++|.+.+.
T Consensus 1040 ~~i~~~i~i~~~~~~~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~ 1119 (1622)
T PLN03130 1040 QLLSTFVLIGIVSTISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEING 1119 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHH
Confidence 356788999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 941 KLVDGYSRPKFHIAGAMEWLCFRLDMLSSLTFAFSLVLLISIPKGV-----IEPAIAGLAVTYGLNLNMLQAWVIWNLCN 1015 (1300)
Q Consensus 941 ~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~~~~~~g~-----~~~~~~gl~l~~~~~~~~~~~~~~~~~~~ 1015 (1300)
+..|...+..+.....++|+..++++++++++.+...+.+.. .+. ..++.+|++++|++.+...+.++.+.+..
T Consensus 1120 ~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~i~~~~~~~v~~-~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~ 1198 (1622)
T PLN03130 1120 RSMDNNIRFTLVNMSSNRWLAIRLETLGGLMIWLTASFAVMQ-NGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASL 1198 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-ccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998877665544433322 221 22678999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCccccCCCCCCCCCCceEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcH
Q 000755 1016 LENKIISVERILQYTCISSEPPLVIEESRPDCSWPTHGEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGK 1095 (1300)
Q Consensus 1016 le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGK 1095 (1300)
+|+.++|+||+.+|++.|+|++...+...+++.||..|.|+|+||+++|+++.++||+|+||+|++||++||||||||||
T Consensus 1199 ~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGK 1278 (1622)
T PLN03130 1199 AENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGK 1278 (1622)
T ss_pred HHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCH
Confidence 99999999999999999888754333445666899999999999999998877789999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEEEcCCCCCCcccHHHhcCCCCCCCHHHHHHHHHHcCCcHHHH
Q 000755 1096 STLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVR 1175 (1300)
Q Consensus 1096 STLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~vpQ~~~lf~gTvr~Nl~~~~~~~d~~i~~~l~~~~l~~~i~ 1175 (1300)
|||+++|+|+++|++|+|.|||+||++++++++|++|++|||||.+|+||||+||+|+.+++|+++|++++++++++++.
T Consensus 1279 STLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~ 1358 (1622)
T PLN03130 1279 SSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIR 1358 (1622)
T ss_pred HHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhc
Q 000755 1176 NKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVID 1255 (1300)
Q Consensus 1176 ~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~ 1255 (1300)
++|+||||+|+|+|.|||||||||+||||||+++|+|||||||||+||.+|++.|+++|++.+++||||+||||++++.+
T Consensus 1359 ~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~ 1438 (1622)
T PLN03130 1359 RNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID 1438 (1622)
T ss_pred hCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCEEEEEeCCEEEEecChhhHHhcCCChHHHHHHHHhhh
Q 000755 1256 SDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLVAEYTQR 1294 (1300)
Q Consensus 1256 ~D~v~vl~~G~i~e~g~~~~l~~~~~~~f~~l~~~~~~~ 1294 (1300)
||||+||++|+|+|+|+|++|+++++|.|++|+++....
T Consensus 1439 ~DrIlVLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~~~~~ 1477 (1622)
T PLN03130 1439 CDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQSTGAA 1477 (1622)
T ss_pred CCEEEEEECCEEEEeCCHHHHHhCCCCHHHHHHHHcChh
Confidence 999999999999999999999987789999999987653
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-182 Score=1833.29 Aligned_cols=1257 Identities=31% Similarity=0.521 Sum_probs=1023.8
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhccCCCCCccchhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 000755 7 FLLKPAFLRGISGSLHLVLLLGLFVSWVWK-KLRVGVSDSEGYKERFKKKSVLRHKLILFCCFAVSVFNLVLCLLDYFSW 85 (1300)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (1300)
|-||+++.+..++..++++++.....+... +. +.. ..............+.++|+....+++...+... ..+
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 101 (1495)
T PLN03232 29 YTPCAIDSLVMIVSHSVLLGLCFYRIWIILDNA-KAQ-----IYVLRKKYYNCVLGILACYCVVEPVLRLVMGISL-FDM 101 (1495)
T ss_pred CCccHHhhHHHHHHHHHHHHHHHHHHHHHhhcc-ccC-----CccccchHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcc
Confidence 679999988777777774444433333221 11 111 0000111111233444555555444443333222 222
Q ss_pred cCC-CCCcchhhHHHHHHHHHHHHHHHHHHHhhccccCCccccchhHHHHHHHH---HHhhhhhhhhhh-hhhhccccch
Q 000755 86 FGN-DWSGDKLVTLADLVLRTLGWGAICVYLHSQFFNSGQQRFPLLLRLWWGFY---LCLSCYCLVSDI-VLYAQHVSLS 160 (1300)
Q Consensus 86 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~ 160 (1300)
.+. .+.......+...++..++++++......++. ... .+++.+++||++. .++.+. ... ...... ...
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~ 175 (1495)
T PLN03232 102 DEETDLPPFEVASLMVEAFAWFSMLVLIGLETKQYV-KEF-RWYVRFGVVYVLVADAVLLDLV---LPLKNSINRT-ALY 175 (1495)
T ss_pred ccccccccchhHHhHHHHHHHHHHHHHHHHHHHHHH-hcC-CCCceeeehhHhhhhHHHHHHH---HHHHHHHhcc-ccc
Confidence 221 22222333244455555666655553323332 222 4588999999887 555444 222 222220 011
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhccccCCCccccccccccCCCCCCCCCccccccCCCCCCCCCCccCchhHHHHHHhHHH
Q 000755 161 VHYLVSDVVSVISGFVFCYVGFLKRDKGEDTLLLQETLLDGDSSIGNGEVSSIKSRGTDNVTPYSNASLFSVLTFSWMGS 240 (1300)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~~s~~~f~W~~p 240 (1300)
......++.+..+++. +..+...++.........+..+ + .+.+..|.+...+||++||+|||+||+|++|
T Consensus 176 -~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~~pe~~a~~~s~~~f~w~~p 245 (1495)
T PLN03232 176 -LCISSRCCQALFGILL-LVYIPELDPYPGYHILNNESLD-N-------VEYDALRGGENICPERYASIFSRIYFSWMTP 245 (1495)
T ss_pred -eehhHHHHHHHHHHHH-HHhcccCCCCCccccccccccc-c-------cccccccccCCCCccccCCHHHHHHHHHHHH
Confidence 1122222232222222 1111111110000000000000 0 0112234456789999999999999999999
Q ss_pred HHHhcccCCCCCCCCCCCCCCCchhhHHHHHHHHHHHhhhhcCCCccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 000755 241 LISLGNKKTLDLEDVPQLDSGDSVVGCFPIFRNKLEANRVEGNKVTAFKLTKALFFSAWKEIVFTAILALLYTLANYVGP 320 (1300)
Q Consensus 241 l~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P 320 (1300)
++++||+++|+.+|||+|+++|+++.++++|++.|+++. +.++++++++++++|++.++.++++.++.+++.+++|
T Consensus 246 l~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~~~~w~~~~----~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~P 321 (1495)
T PLN03232 246 LMQLGYRKPITEKDVWQLDQWDQTETLIKRFQRCWTEES----RRPKPWLLRALNNSLGGRFWLGGIFKIGHDLSQFVGP 321 (1495)
T ss_pred HHHHHhcCCCChhhccCCChhhhHHHHHHHHHHHHHHhh----ccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998764 2245789999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhcCCCHHHH
Q 000755 321 YLIDTFVQYLNGEREFKNEGYVLVSTFFVAKIVECLAQRHWMFRLQVAGIKMRSVLVSMVYNKGLTLSCQAKQSYTSGEI 400 (1300)
Q Consensus 321 ~ll~~li~~l~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~g~~ir~~L~~~Iy~K~L~ls~~~~~~~~~G~I 400 (1300)
++++.+++++++.+. ...++.++++++++.++.+++.+++.+...+++.++|..++..+|+|.++++...++++++|++
T Consensus 322 ~ll~~li~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~l~~~i~~k~l~l~~~~~~~~~~G~i 400 (1495)
T PLN03232 322 VILSHLLQSMQEGDP-AWVGYVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKV 400 (1495)
T ss_pred HHHHHHHHHHhcCCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHH
Confidence 999999999975432 3357778888888888888888888888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 401 INFMTVDAERIGDFGWYMHDPWLVILQVSLALLILYKNLGLASIAALFATVLIMLTNFPLGRLQENFQDKLMGSKDKRMK 480 (1300)
Q Consensus 401 vnl~s~Dv~~i~~~~~~~~~~~~~~l~i~~~l~lL~~~lg~~~l~~l~~~~l~~~~~~~~~k~~~~~~~~~~~~~d~r~~ 480 (1300)
+|+|++|++++.+++..+|.+|..|++++++++++|..+|++++++++++++++|++.+++++.++.+++.++.+|+|.+
T Consensus 401 ~n~ls~Dv~~i~~~~~~l~~l~~~p~~ii~~~~~l~~~lg~~~l~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~ 480 (1495)
T PLN03232 401 TNMITTDANALQQIAEQLHGLWSAPFRIIVSMVLLYQQLGVASLFGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVG 480 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888888888888999999999999999999999999
Q ss_pred HHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHH
Q 000755 481 VTSEILRNMRILKLQGWEMKFLSKIIELRKIEAGWLKKFLYTGAMTSFVFWGAPTFVSVATFGACMLLGIPLESGKILSA 560 (1300)
Q Consensus 481 ~~~E~L~~ir~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~~p~~v~~~~f~~~~~~~~~Lt~g~vft~ 560 (1300)
.++|+++|||+||+|+||+.+.+++++.|++|.+..++.........++....|.++.+++|++|.+.++++|++.+|++
T Consensus 481 ~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~~~v~~~~lt~g~vf~~ 560 (1495)
T PLN03232 481 IINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIPVVVTLVSFGVFVLLGGDLTPARAFTS 560 (1495)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999998887777766666677888888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCCCCCcceEEEEeEEEEecCCCCCCceeccee
Q 000755 561 LATFRILQEPIYNLPDTISMIIQTKVSLDRIASFLCLDDLQSDVVEKHPRGSSETAIEIVDGNFAWDISSNNPTLRDINL 640 (1300)
Q Consensus 561 lal~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~~~~~~~~~~I~i~~~~fs~~~~~~~~~L~~i~l 640 (1300)
+++++.+..|+..+|..+..+.++++|++||++|++.++....... +.......|+++|++|+|+...++++|+|+||
T Consensus 561 l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~~--~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl 638 (1495)
T PLN03232 561 LSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQNP--PLQPGAPAISIKNGYFSWDSKTSKPTLSDINL 638 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccC--CcCCCCCcEEEEeeEEEcCCCCCCceeeeeEE
Confidence 9999999999999999999999999999999999987653221111 11112346999999999985445789999999
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhccccCCccE-EEEcCeEEEEecCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhc
Q 000755 641 KVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGT-LKLCGTKAYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACS 719 (1300)
Q Consensus 641 ~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~-i~~~g~~ayv~Q~~~l~~~Ti~eNI~fg~~~~~~~~~~vl~~~~ 719 (1300)
+|++|++++|+|++|||||||+++|+|+++|++|. +.+.+.++||+|+||+|++||||||+||+++++++|++++++|+
T Consensus 639 ~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~ 718 (1495)
T PLN03232 639 EIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTA 718 (1495)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhC
Confidence 99999999999999999999999999999999974 56789999999999999999999999999999999999999999
Q ss_pred chHHHhhccCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEec
Q 000755 720 LKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTH 799 (1300)
Q Consensus 720 l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH 799 (1300)
|++|++.+|+||+|+|||+|.+|||||||||+||||+|++||||||||||||||++++++++++++.+.++++|+|+|||
T Consensus 719 L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH 798 (1495)
T PLN03232 719 LQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTN 798 (1495)
T ss_pred CHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999988889999999999
Q ss_pred CCCccccCCEEEEEeCCeEEEecChHHHHhcCchHHHHHHHHHHHhhhh------cccCC-----------CC--ccccc
Q 000755 800 QVEFLPAADLILVMKDGKITQAGKYNDILNSGTDFMVLVGAHQQALSAL------DSIEG-----------GP--VSERI 860 (1300)
Q Consensus 800 ~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~------~~~~~-----------~~--~~~~~ 860 (1300)
+++.++.||+|++|++|+|++.|+|+|+++.++.|..+...+....+.. +.... .. ...+.
T Consensus 799 ~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 878 (1495)
T PLN03232 799 QLHFLPLMDRIILVSEGMIKEEGTFAELSKSGSLFKKLMENAGKMDATQEVNTNDENILKLGPTVTIDVSERNLGSTKQG 878 (1495)
T ss_pred ChhhHHhCCEEEEEeCCEEEEecCHHHHHhcchhHHHHHHhccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999988877877764432100000 00000 00 00000
Q ss_pred cccc--cCCCccccccc---------------------------------------------------------------
Q 000755 861 SMNK--ENGGMDTTNGV--------------------------------------------------------------- 875 (1300)
Q Consensus 861 ~~~~--~~~~e~~~~g~--------------------------------------------------------------- 875 (1300)
+..+ ..++|+++.|.
T Consensus 879 ~~~~~~~~~~e~~~~g~v~~~vy~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~l~~y~~ 958 (1495)
T PLN03232 879 KRGRSVLVKQEERETGIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVLRVSSSTWLSIWTDQSTPKSYSPGFYIVVYAL 958 (1495)
T ss_pred ccchhhhhhHHHHhcCcccHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcchHHHHHHH
Confidence 0000 00011111111
Q ss_pred --------------------------------------------cccCcc--ccccccc--h------------------
Q 000755 876 --------------------------------------------TMKEGN--EDIQTDK--V------------------ 889 (1300)
Q Consensus 876 --------------------------------------------~lp~gr--nr~s~D~--v------------------ 889 (1300)
+.|.|+ ||+++|+ +
T Consensus 959 l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~ 1038 (1495)
T PLN03232 959 LGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQL 1038 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 118899 9999998 3
Q ss_pred ---------------------------hhhhhhHHHHHHHHHHhhhhhhHHHHHHHHhhchHHHHHhcchHHHHHHHHHH
Q 000755 890 ---------------------------DEQYYIPSARELSRLVGVCKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKL 942 (1300)
Q Consensus 890 ---------------------------~~~~y~~~~r~l~rl~~~~~sp~~~~~~E~l~G~~tIraf~~e~~f~~~~~~~ 942 (1300)
.+.+|.+++|+++|.+..+++|+++++.|+++|+.|||+|+++++|.+++.+.
T Consensus 1039 i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~ 1118 (1495)
T PLN03232 1039 LSTFALIGTVSTISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKS 1118 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHH
Confidence 35678889999999999999999999999999999999999999999999999
Q ss_pred HHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 943 VDGYSRPKFHIAGAMEWLCFRLDMLSSLTFAFSLVLLISIPKGVI-----EPAIAGLAVTYGLNLNMLQAWVIWNLCNLE 1017 (1300)
Q Consensus 943 ~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~~~~~~g~~-----~~~~~gl~l~~~~~~~~~~~~~~~~~~~le 1017 (1300)
.|.+.+..+.....+.|+..++++++.+++.+...+.+. ..+.+ .++.+|++++|+..+..++.++++.+.++|
T Consensus 1119 ~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~ 1197 (1495)
T PLN03232 1119 MDNNIRFTLANTSSNRWLTIRLETLGGVMIWLTATFAVL-RNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAE 1197 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888899999999988876655444333322 22322 256788899999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCccccCCCCCCCCCCceEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHH
Q 000755 1018 NKIISVERILQYTCISSEPPLVIEESRPDCSWPTHGEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKST 1097 (1300)
Q Consensus 1018 ~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKST 1097 (1300)
+.++|+||+.+|.+.|+|++...+...+++.||..|.|+|+||+++|+++.++||+|+||+|++||++||||||||||||
T Consensus 1198 ~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKST 1277 (1495)
T PLN03232 1198 NSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSS 1277 (1495)
T ss_pred HHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHH
Confidence 99999999999999888765322333456679999999999999999877778999999999999999999999999999
Q ss_pred HHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEEEcCCCCCCcccHHHhcCCCCCCCHHHHHHHHHHcCCcHHHHhh
Q 000755 1098 LIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNK 1177 (1300)
Q Consensus 1098 Ll~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~vpQ~~~lf~gTvr~Nl~~~~~~~d~~i~~~l~~~~l~~~i~~~ 1177 (1300)
|+++|+|+++|++|+|.|||+|+++++++++|++|++|||||.+|+||||+||+|..+++|+|+|++++++++++++.++
T Consensus 1278 L~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~l 1357 (1495)
T PLN03232 1278 MLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRN 1357 (1495)
T ss_pred HHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999899999999999999999999999
Q ss_pred cCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhccC
Q 000755 1178 EGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSD 1257 (1300)
Q Consensus 1178 ~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~~D 1257 (1300)
|+||||.++|+|.|||||||||+||||||+++|+|||||||||+||++|++.|++.|++.+++||||+||||++++.+||
T Consensus 1358 p~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~D 1437 (1495)
T PLN03232 1358 PFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCD 1437 (1495)
T ss_pred cCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCEEEEecChhhHHhcCCChHHHHHHHHhhh
Q 000755 1258 MVLLLSHGIIEEYDSPTKLLENKSSSFAQLVAEYTQR 1294 (1300)
Q Consensus 1258 ~v~vl~~G~i~e~g~~~~l~~~~~~~f~~l~~~~~~~ 1294 (1300)
||+||++|+|+|+|+|++|+++++|.|++|+++....
T Consensus 1438 rIlVL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~~~~~ 1474 (1495)
T PLN03232 1438 KILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTGPA 1474 (1495)
T ss_pred EEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhChh
Confidence 9999999999999999999988778999999987653
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-179 Score=1799.01 Aligned_cols=1069 Identities=38% Similarity=0.654 Sum_probs=955.5
Q ss_pred CCCCCccCchhHHHHHHhHHHHHHhcccCCCCCCCCCCCCCCCchhhHHHHHHHHHHHhhhhc-----------------
Q 000755 220 NVTPYSNASLFSVLTFSWMGSLISLGNKKTLDLEDVPQLDSGDSVVGCFPIFRNKLEANRVEG----------------- 282 (1300)
Q Consensus 220 ~~~p~~~a~~~s~~~f~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~f~~~~~~~~~~~----------------- 282 (1300)
..+||++||+|||++|||+||++++||+++|+.+|||+++++++++.++++|++.|+++..+.
T Consensus 200 ~~~~e~~a~~~s~~~f~W~~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 279 (1522)
T TIGR00957 200 NPCPESSASFLSRITFWWITGMAVYGYRQPLEESDLWSLNKEDTSEMVVPVLVENWKKECKKTRKQPVSAVYGKKDPSKP 279 (1522)
T ss_pred CCCCcccCCHHHHHHHHHhHHHHHHHhcCCCChhhccCCCHhHhHHHHHHHHHHHHHHHHhhcccccccccccccccccc
Confidence 357999999999999999999999999999999999999999999999999999998752100
Q ss_pred --------------------CCCccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhHHH
Q 000755 283 --------------------NKVTAFKLTKALFFSAWKEIVFTAILALLYTLANYVGPYLIDTFVQYLNGEREFKNEGYV 342 (1300)
Q Consensus 283 --------------------~~~~~~~l~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~g~~ 342 (1300)
++.++++++++++++||+.++..+++.++..++.+++|++++.+++++.+.......||+
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~~~~~~l~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~ 359 (1522)
T TIGR00957 280 KGSSQLDANEEVEALIVKSPHKPRKPSLFKVLYKTFGPYFLMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMAPDWQGYF 359 (1522)
T ss_pred cccccccccccccccccccccccCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccchHHH
Confidence 112347899999999999999999999999999999999999999998765433446888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhcCCCHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 000755 343 LVSTFFVAKIVECLAQRHWMFRLQVAGIKMRSVLVSMVYNKGLTLSCQAKQSYTSGEIINFMTVDAERIGDFGWYMHDPW 422 (1300)
Q Consensus 343 l~~~l~~~~~~~~l~~~~~~~~~~~~g~~ir~~L~~~Iy~K~L~ls~~~~~~~~~G~Ivnl~s~Dv~~i~~~~~~~~~~~ 422 (1300)
++++++++.++.+++.++|.+...++++++|..|+..||+|+++++...+++.++|+++|+|++|++++.++..++|.+|
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~~~~~ 439 (1522)
T TIGR00957 360 YTGLLFVCACLQTLILHQYFHICFVSGMRIKTAVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLATYINMIW 439 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhcCCCCHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 88888888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHH
Q 000755 423 LVILQVSLALLILYKNLGLASIAALFATVLIMLTNFPLGRLQENFQDKLMGSKDKRMKVTSEILRNMRILKLQGWEMKFL 502 (1300)
Q Consensus 423 ~~~l~i~~~l~lL~~~lg~~~l~~l~~~~l~~~~~~~~~k~~~~~~~~~~~~~d~r~~~~~E~L~~ir~IK~~~~E~~f~ 502 (1300)
..|++++++++++|..+|+++++++++++++++++..++++.++.++++++.+|+|++.++|+++|||+||+|+||+.|.
T Consensus 440 ~~~~~i~~~~~ll~~~~g~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~ 519 (1522)
T TIGR00957 440 SAPLQVILALYFLWLNLGPSVLAGVAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFL 519 (1522)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 503 SKIIELRKIEAGWLKKFLYTGAMTSFVFWGAPTFVSVATFGACMLL--GIPLESGKILSALATFRILQEPIYNLPDTISM 580 (1300)
Q Consensus 503 ~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~~p~~v~~~~f~~~~~~--~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~ 580 (1300)
+++++.|++|.+..++..+......+..+..|.++.+++|++|.+. ++.++++.+|+++++++.+..|+..+|..+..
T Consensus 520 ~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~ 599 (1522)
T TIGR00957 520 DKVEGIRQEELKVLKKSAYLHAVGTFTWVCTPFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISS 599 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988888777777777778888888899988776 46799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcccccCCCC-CCCcceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChH
Q 000755 581 IIQTKVSLDRIASFLCLDDLQSDVVEKHPR-GSSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKS 659 (1300)
Q Consensus 581 ~~~a~vs~~RI~~fL~~~e~~~~~~~~~~~-~~~~~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKS 659 (1300)
+.++++|++||++|++.++.++...+.... ......|+++|++|+|+. .++++|+|+||+|++|++++|+|+||||||
T Consensus 600 ~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~l~~isl~i~~G~~v~IvG~~GsGKS 678 (1522)
T TIGR00957 600 IVQASVSLKRLRIFLSHEELEPDSIERRTIKPGEGNSITVHNATFTWAR-DLPPTLNGITFSIPEGALVAVVGQVGCGKS 678 (1522)
T ss_pred HHHHHHHHHHHHHHHcCcccccccccccccCCCCCCcEEEEEeEEEcCC-CCCceeeeeEEEEcCCCEEEEECCCCCCHH
Confidence 999999999999999876543321111111 111236999999999973 246799999999999999999999999999
Q ss_pred HHHHHHhccccCCccEEEEcCeEEEEecCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhhccCCCcccccCCC
Q 000755 660 SLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERG 739 (1300)
Q Consensus 660 TLl~~llG~~~~~~G~i~~~g~~ayv~Q~~~l~~~Ti~eNI~fg~~~~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g 739 (1300)
||+++|+|+++|++|+|.++|.++||+|+||++++||+|||.||.++++++|++++++|++.+|++.+|+||+|.+||+|
T Consensus 679 TLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g 758 (1522)
T TIGR00957 679 SLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKG 758 (1522)
T ss_pred HHHHHHhCCCccCCcEEEECCEEEEEcCCccccCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH--HhhcCCcEEEEEecCCCccccCCEEEEEeCCe
Q 000755 740 INLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL--LGLLRSKTVIYVTHQVEFLPAADLILVMKDGK 817 (1300)
Q Consensus 740 ~~LSGGQkqRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~--~~~l~~~TvIlvtH~~~~l~~~d~i~~l~~G~ 817 (1300)
.+|||||||||+||||+|++|+|||||||||+||+++++++++.++ .+.++++|+|+|||+++.++.||+|++|++|+
T Consensus 759 ~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~ 838 (1522)
T TIGR00957 759 VNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGK 838 (1522)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCe
Confidence 9999999999999999999999999999999999999999998876 34667899999999999999999999999999
Q ss_pred EEEecChHHHHhcCchHHHHHHHHHHHhhh---h---------cccC---------------C----------C---C--
Q 000755 818 ITQAGKYNDILNSGTDFMVLVGAHQQALSA---L---------DSIE---------------G----------G---P-- 855 (1300)
Q Consensus 818 i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~---~---------~~~~---------------~----------~---~-- 855 (1300)
|++.|+++++.+..+.|..+...+...... . +..+ + . .
T Consensus 839 i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 918 (1522)
T TIGR00957 839 ISEMGSYQELLQRDGAFAEFLRTYAPDEQQGHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGDQS 918 (1522)
T ss_pred EEeeCCHHHHHhcchhHHHHHHhhccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccc
Confidence 999999999998777776665422110000 0 0000 0 0 0
Q ss_pred ----cc---cccccc---cc-CCCccccccc-------------------------------------------------
Q 000755 856 ----VS---ERISMN---KE-NGGMDTTNGV------------------------------------------------- 875 (1300)
Q Consensus 856 ----~~---~~~~~~---~~-~~~e~~~~g~------------------------------------------------- 875 (1300)
.. ...+.. .+ .++|+++.|.
T Consensus 919 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~ 998 (1522)
T TIGR00957 919 RHHGSSAELQKAEAKEETWKLMEADKAQTGQVELSVYWDYMKAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVN 998 (1522)
T ss_pred ccccccccccccccccchhhhHHHHHHhcCcccHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 00 000000 00 0011111121
Q ss_pred -----------------------------------------------------------cccCcc--ccccccc--h---
Q 000755 876 -----------------------------------------------------------TMKEGN--EDIQTDK--V--- 889 (1300)
Q Consensus 876 -----------------------------------------------------------~lp~gr--nr~s~D~--v--- 889 (1300)
..|.|+ |||++|+ +
T Consensus 999 ~~~~~~~~~~~iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~ 1078 (1522)
T TIGR00957 999 GTQNNTSLRLSVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSM 1078 (1522)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHH
Confidence 118899 9999998 2
Q ss_pred ------------------------------------------hhhhhhHHHHHHHHHHhhhhhhHHHHHHHHhhchHHHH
Q 000755 890 ------------------------------------------DEQYYIPSARELSRLVGVCKAPVIQHFSETISGSTTIR 927 (1300)
Q Consensus 890 ------------------------------------------~~~~y~~~~r~l~rl~~~~~sp~~~~~~E~l~G~~tIr 927 (1300)
++++|.+++|+++|++..+++|+++++.|+++|+.|||
T Consensus 1079 l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIr 1158 (1522)
T TIGR00957 1079 IPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIR 1158 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHH
Confidence 57889999999999999999999999999999999999
Q ss_pred HhcchHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHH
Q 000755 928 SFDQESRFRDTNMKLVDGYSRPKFHIAGAMEWLCFRLDMLSSLTFAFSLVLLISIPKGVIEPAIAGLAVTYGLNLNMLQA 1007 (1300)
Q Consensus 928 af~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~gl~l~~~~~~~~~~~ 1007 (1300)
+|+++++|.+++.+..|.++++.+.....++|+..++++++.+++.++..+.+ ...|.+++|.+|++++|+..+..++.
T Consensus 1159 af~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~g~l~~~l~~~~~~~~~l~ 1237 (1522)
T TIGR00957 1159 AFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFAALFAV-ISRHSLSAGLVGLSVSYSLQVTFYLN 1237 (1522)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987765444433332 33577899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccCCCCCCCCCCceEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEE
Q 000755 1008 WVIWNLCNLENKIISVERILQYTCISSEPPLVIEESRPDCSWPTHGEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGI 1087 (1300)
Q Consensus 1008 ~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgI 1087 (1300)
++++.+.++|+.++|+||+.+|.+.|+|++...+...++..||..|.|+|+||+++|+++.++||+|+||+|++||++||
T Consensus 1238 ~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaI 1317 (1522)
T TIGR00957 1238 WLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGI 1317 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEE
Confidence 99999999999999999999999988776533333445668999999999999999987767899999999999999999
Q ss_pred ECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEEEcCCCCCCcccHHHhcCCCCCCCHHHHHHHHHH
Q 000755 1088 VGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEEYKDEEIWEALDK 1167 (1300)
Q Consensus 1088 vG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~vpQ~~~lf~gTvr~Nl~~~~~~~d~~i~~~l~~ 1167 (1300)
|||||||||||+++|+|+++|++|+|.|||+||++++++++|++|++|||||++|+||||+||+|+++++|+++|+++++
T Consensus 1318 VGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~ 1397 (1522)
T TIGR00957 1318 VGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALEL 1397 (1522)
T ss_pred ECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEe
Q 000755 1168 CQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIA 1247 (1300)
Q Consensus 1168 ~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~ia 1247 (1300)
+++++++.++|+||||.|+|+|.|||||||||+||||||+++|+|||||||||+||.+|++.|+++|++.+++||||+||
T Consensus 1398 a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IA 1477 (1522)
T TIGR00957 1398 AHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIA 1477 (1522)
T ss_pred cCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhhhccCEEEEEeCCEEEEecChhhHHhcCCChHHHHHHHH
Q 000755 1248 HRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLVAEY 1291 (1300)
Q Consensus 1248 Hrl~~i~~~D~v~vl~~G~i~e~g~~~~l~~~~~~~f~~l~~~~ 1291 (1300)
||++++.+||||+||++|+|+|+|+|++|+++ +|.|++|+++.
T Consensus 1478 HRl~ti~~~DrIlVld~G~IvE~G~~~eLl~~-~~~f~~l~~~~ 1520 (1522)
T TIGR00957 1478 HRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQ-RGIFYSMAKDA 1520 (1522)
T ss_pred cCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHHHc
Confidence 99999999999999999999999999999986 69999999884
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-170 Score=1709.50 Aligned_cols=1061 Identities=29% Similarity=0.491 Sum_probs=941.9
Q ss_pred CCCCccCchhHHHHHHhHHHHHHhcccCCCCCCCCCCCCCCCchhhHHHHHHHHHHHhhhhcCCCccchhHHHHHHHhHH
Q 000755 221 VTPYSNASLFSVLTFSWMGSLISLGNKKTLDLEDVPQLDSGDSVVGCFPIFRNKLEANRVEGNKVTAFKLTKALFFSAWK 300 (1300)
Q Consensus 221 ~~p~~~a~~~s~~~f~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 300 (1300)
.+||++||+|||++|||++|++++||+++|+.+|||+|+++++++.++++|++.|+++. . ++.+.++++++++++|++
T Consensus 3 ~~pe~~a~~~s~~~F~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~-~-~~~~~~~L~~~l~~~~~~ 80 (1490)
T TIGR01271 3 RSPVEKANFLSKLFFWWTRPILRKGYRQKLELSDIYQIPSFDSADNLSERLEREWDREL-A-SAKKNPKLLNALRRCFFW 80 (1490)
T ss_pred CCccccCCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChHHhHHHHHHHHHHHHHHHH-h-ccCCCChHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999998754 1 123457899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 301 EIVFTAILALLYTLANYVGPYLIDTFVQYLNGERE-FKNEGYVLVSTFFVAKIVECLAQRHWMFRLQVAGIKMRSVLVSM 379 (1300)
Q Consensus 301 ~~~~~~l~~l~~~~~~~~~P~ll~~li~~l~~~~~-~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~g~~ir~~L~~~ 379 (1300)
.+++.+++.++.+++.+++|++++.+|++++.... ....+|.++++++++.++.+++.+++.|...++++++|.+|+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~ 160 (1490)
T TIGR01271 81 RFVFYGILLYFGEATKAVQPLLLGRIIASYDPFNAPEREIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSL 160 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999854322 22357888889999999999999999999999999999999999
Q ss_pred HHHHHhcCCchhhcCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 380 VYNKGLTLSCQAKQSYTSGEIINFMTVDAERIGDFGWYMHDPWLVILQVSLALLILYKNLGLASIAALFATVLIMLTNFP 459 (1300)
Q Consensus 380 Iy~K~L~ls~~~~~~~~~G~Ivnl~s~Dv~~i~~~~~~~~~~~~~~l~i~~~l~lL~~~lg~~~l~~l~~~~l~~~~~~~ 459 (1300)
||+|+++++...+++.++|+++|+|++|++++.+++.++|.+|..|++++++++++|..+|+++++++++++++++++.+
T Consensus 161 iy~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~~~~~~~ 240 (1490)
T TIGR01271 161 IYKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALAHFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQAC 240 (1490)
T ss_pred HHHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 460 LGRLQENFQDKLMGSKDKRMKVTSEILRNMRILKLQGWEMKFLSKIIELRKIEAGWLKKFLYTGAMTSFVFWGAPTFVSV 539 (1300)
Q Consensus 460 ~~k~~~~~~~~~~~~~d~r~~~~~E~L~~ir~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~~p~~v~~ 539 (1300)
++++..++++++|+.+|+|++.++|+++|||+||+|+||+.|.+++++.|+.|++..++..+......++++..|.++.+
T Consensus 241 ~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (1490)
T TIGR01271 241 LGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFFSGFFVVF 320 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888877777788888999999
Q ss_pred HHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCCCCCcceEE
Q 000755 540 ATFGACMLLGIPLESGKILSALATFRILQEPIY-NLPDTISMIIQTKVSLDRIASFLCLDDLQSDVVEKHPRGSSETAIE 618 (1300)
Q Consensus 540 ~~f~~~~~~~~~Lt~g~vft~lal~~~l~~pl~-~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~~~~~~~~~~I~ 618 (1300)
++|++|.+.++ ++++.+|+++++++++..|+. .+|..+..+.++.+|++||++||..+|.+.... ......++
T Consensus 321 ~~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~-----~~~~~~i~ 394 (1490)
T TIGR01271 321 LSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLEY-----NLTTTEVE 394 (1490)
T ss_pred HHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc-----cCCCCceE
Confidence 99999887754 789999999999999999985 799999999999999999999998776543211 01123699
Q ss_pred EEeEEEEecCC-------------------------------CCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhc
Q 000755 619 IVDGNFAWDIS-------------------------------SNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILG 667 (1300)
Q Consensus 619 i~~~~fs~~~~-------------------------------~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG 667 (1300)
++|++|+|+.. ..+++|+|+||+|++|++++|+|||||||||||++|+|
T Consensus 395 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G 474 (1490)
T TIGR01271 395 MVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMG 474 (1490)
T ss_pred EecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 99999999631 01468999999999999999999999999999999999
Q ss_pred cccCCccEEEEcCeEEEEecCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHH
Q 000755 668 EVPKISGTLKLCGTKAYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQK 747 (1300)
Q Consensus 668 ~~~~~~G~i~~~g~~ayv~Q~~~l~~~Ti~eNI~fg~~~~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQk 747 (1300)
+++|++|+|.++|.++||+|+||++++||+|||+||.++++++|++++++|+|.+|++.+|.||+|.+|++|.+||||||
T Consensus 475 ~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqk 554 (1490)
T TIGR01271 475 ELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQR 554 (1490)
T ss_pred CCCCCCceEEECCEEEEEeCCCccCCccHHHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHH
Q 000755 748 QRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDI 827 (1300)
Q Consensus 748 qRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l 827 (1300)
|||+||||+|++|+||||||||||||+++++++++.|+.+.++++|+|+|||+++.++.||+|++|++|+|++.|+++++
T Consensus 555 qRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l 634 (1490)
T TIGR01271 555 ARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSEL 634 (1490)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999999999999999999999999888877789999999999999999999999999999999999999
Q ss_pred HhcCchHHHHHHHHH-----------------------H-------------------Hhh-------------------
Q 000755 828 LNSGTDFMVLVGAHQ-----------------------Q-------------------ALS------------------- 846 (1300)
Q Consensus 828 ~~~~~~~~~l~~~~~-----------------------~-------------------~~~------------------- 846 (1300)
...+..|........ . ..+
T Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (1490)
T TIGR01271 635 QAKRPDFSSLLLGLEAFDNFSAERRNSILTETLRRVSIDGDSTVFSGPETIKQSFKQPPPEFAEKRKQSIILNPIASARK 714 (1490)
T ss_pred HhcChHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 865444433221000 0 000
Q ss_pred ----------------h--hc----------cc---------------------------------C-------------
Q 000755 847 ----------------A--LD----------SI---------------------------------E------------- 852 (1300)
Q Consensus 847 ----------------~--~~----------~~---------------------------------~------------- 852 (1300)
. .. +. .
T Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (1490)
T TIGR01271 715 FSFVQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGEESLPRGNQYHHGLQHQAQRRQSVLQLMTHSNRGENRREQLQT 794 (1490)
T ss_pred cccccccccccccccccchhcccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccc
Confidence 0 00 00 0
Q ss_pred -------------------------CCCc----------c---------cccc--ccc----------------------
Q 000755 853 -------------------------GGPV----------S---------ERIS--MNK---------------------- 864 (1300)
Q Consensus 853 -------------------------~~~~----------~---------~~~~--~~~---------------------- 864 (1300)
..+. . ++.. ...
T Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vY~~Y~~~~g~~~~~~~~~~ 874 (1490)
T TIGR01271 795 SFRKKSSITQQNELASELDIYSRRLSKDSVYEISEEINEEDLKECFADERENVFETTTWNTYLRYITTNRNLVFVLIFCL 874 (1490)
T ss_pred ccccccccccccccccccccccccccccccccccccchhhhhhhhhhHHHHhhcCcccHHHHHHHHHhcCcHHHHHHHHH
Confidence 0000 0 0000 000
Q ss_pred ------------------cCCC-------ccc---------------cccc-----------------------------
Q 000755 865 ------------------ENGG-------MDT---------------TNGV----------------------------- 875 (1300)
Q Consensus 865 ------------------~~~~-------e~~---------------~~g~----------------------------- 875 (1300)
...+ ... ..+.
T Consensus 875 ~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 954 (1490)
T TIGR01271 875 VIFLAEVAASLLGLWLITDNPSAPNYVDQQHANASSPDVQKPVIITPTSAYYIFYIYVGTADSVLALGFFRGLPLVHTLL 954 (1490)
T ss_pred HHHHHHHHHHHhhHHHHhcccccccccccccccCCCccccccccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 000 0000
Q ss_pred -----------------------cccCcc--ccccccc--h---------------------------------------
Q 000755 876 -----------------------TMKEGN--EDIQTDK--V--------------------------------------- 889 (1300)
Q Consensus 876 -----------------------~lp~gr--nr~s~D~--v--------------------------------------- 889 (1300)
+.|.|+ |||++|+ +
T Consensus 955 ~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~l~~~~l 1034 (1490)
T TIGR01271 955 TVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIAAIPV 1034 (1490)
T ss_pred HHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 118899 9999998 3
Q ss_pred ------hhhhhhHHHHHHHHHHhhhhhhHHHHHHHHhhchHHHHHhcchHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Q 000755 890 ------DEQYYIPSARELSRLVGVCKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFHIAGAMEWLCFR 963 (1300)
Q Consensus 890 ------~~~~y~~~~r~l~rl~~~~~sp~~~~~~E~l~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~ 963 (1300)
++.+|.+++|+++|++..+++|+++|+.|+++|+.|||+|+++++|.+++.+..+.+.+..+.....++|+..+
T Consensus 1035 ~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~ 1114 (1490)
T TIGR01271 1035 AVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQMR 1114 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccc--
Q 000755 964 LDMLSSLTFAFSLVLLISIPKGVIEPAIAGLAVTYGLNLNMLQAWVIWNLCNLENKIISVERILQYTCISSEPPLVIE-- 1041 (1300)
Q Consensus 964 l~~~~~~~~~~~~~~~~~~~~g~~~~~~~gl~l~~~~~~~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~-- 1041 (1300)
+++++.+.+..++++.+. ...++++.+|++++|++.+...+.++++.+.++|+.+.|+||+.+|.+.|+|++...+
T Consensus 1115 ~~~i~~~~~~~~~~l~~~--~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~~~~~ 1192 (1490)
T TIGR01271 1115 IDIIFVFFFIAVTFIAIG--TNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGG 1192 (1490)
T ss_pred HHHHHHHHHHHHHHHHHH--HhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccc
Confidence 999876654433333222 2235678899999999999999999999999999999999999999988877542111
Q ss_pred ------------cCCCCCCCCCCceEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCC
Q 000755 1042 ------------ESRPDCSWPTHGEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPT 1109 (1300)
Q Consensus 1042 ------------~~~~~~~wp~~g~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~ 1109 (1300)
...+++.||..|.|+|+||+++|+++.+++|+|+||+|++||++|||||||||||||+++|+|+++ .
T Consensus 1193 ~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~ 1271 (1490)
T TIGR01271 1193 GKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-T 1271 (1490)
T ss_pred cccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C
Confidence 123455799999999999999998877889999999999999999999999999999999999997 7
Q ss_pred cceEEECCeecCCCCHHHHhcccEEEcCCCCCCcccHHHhcCCCCCCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCC
Q 000755 1110 AGEIVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENG 1189 (1300)
Q Consensus 1110 ~G~I~idg~di~~i~~~~lr~~i~~vpQ~~~lf~gTvr~Nl~~~~~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G 1189 (1300)
+|+|.|||+|+++++++++|++|+||||||++|+||||+||+|+.+++|+++|++|+++++++++.++|+||||+|+|+|
T Consensus 1272 ~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G 1351 (1490)
T TIGR01271 1272 EGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGG 1351 (1490)
T ss_pred CcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhccCEEEEEeCCEEEE
Q 000755 1190 ENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEE 1269 (1300)
Q Consensus 1190 ~~LSgGqrQrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~~D~v~vl~~G~i~e 1269 (1300)
.|||||||||+||||||+++|+|||||||||+||.+|++.|++.|++.+++||||+||||++++.+||||+||++|+|+|
T Consensus 1352 ~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE 1431 (1490)
T TIGR01271 1352 YVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQ 1431 (1490)
T ss_pred CcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecChhhHHhcCCChHHHHHHHHhh
Q 000755 1270 YDSPTKLLENKSSSFAQLVAEYTQ 1293 (1300)
Q Consensus 1270 ~g~~~~l~~~~~~~f~~l~~~~~~ 1293 (1300)
+|+|++|++ ++|.|++|+++...
T Consensus 1432 ~g~p~~Ll~-~~~~f~~l~~~~~~ 1454 (1490)
T TIGR01271 1432 YDSIQKLLN-ETSLFKQAMSAADR 1454 (1490)
T ss_pred eCCHHHHHc-CCcHHHHHHHHhCh
Confidence 999999996 58999999997764
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-161 Score=1626.51 Aligned_cols=1075 Identities=31% Similarity=0.504 Sum_probs=935.8
Q ss_pred CCCCCCccCchhHHHHHHhHHHHHHhcccCCCCCCCCCCCCCCCchhhHHHHHHHH----------HHHhhhh-------
Q 000755 219 DNVTPYSNASLFSVLTFSWMGSLISLGNKKTLDLEDVPQLDSGDSVVGCFPIFRNK----------LEANRVE------- 281 (1300)
Q Consensus 219 ~~~~p~~~a~~~s~~~f~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~f~~~----------~~~~~~~------- 281 (1300)
....||+++|||.++++.|++|++.+..|..|+++|+|+...+.|+-++.-++.+. |+...+.
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (1560)
T PTZ00243 57 YTPVPEETASWFQRYYYGWVYEYVLLASKEQLTEEDLPPPTRDVRAHECGLRLSRAVQAAMYERNAWNCMVGAEVVSTLD 136 (1560)
T ss_pred CCCCccchhhHHHHHHHHHHHHHHHHHHHhhcccccCCCCcchhhHHHHhHHHHHHHHHHHHhhcccccccccEEEeecc
Confidence 45678999999999999999999999999999999999999999886665544433 3311000
Q ss_pred --------------------------------------------------------------------------c-----
Q 000755 282 --------------------------------------------------------------------------G----- 282 (1300)
Q Consensus 282 --------------------------------------------------------------------------~----- 282 (1300)
.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (1560)
T PTZ00243 137 ASSRGVLRWVGVPQQGGYTRMMAGVEWSVPPALRTAARSDDSGASPFFNGVAHGEHLFTPEQSNMSTLEEPTDVRLYLSS 216 (1560)
T ss_pred ccccceEEeecccccCCCcceeeeeeeccCchhhhcccCCCCCCccccccccccccccCcccCCceeeeeeheeeEeecc
Confidence 0
Q ss_pred ----------CCCccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHH
Q 000755 283 ----------NKVTAFKLTKALFFSAWKEIVFTAILALLYTLANYVGPYLIDTFVQYLNGEREFKNEGYVLVSTFFVAKI 352 (1300)
Q Consensus 283 ----------~~~~~~~l~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~g~~l~~~l~~~~~ 352 (1300)
..++..++++++++++|+.++..++++++.+++.+++|++++.+++++++.......+++++++++++.+
T Consensus 217 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~~~~~~g~~l~~~l~~~~~ 296 (1560)
T PTZ00243 217 TGSVVRPGPPPTPKRLSLLRTLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNATWGRGLGLVLTLFLTQL 296 (1560)
T ss_pred cccccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHH
Confidence 0022347999999999999999999999999999999999999999996544333457788888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhc--CCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 000755 353 VECLAQRHWMFRLQVAGIKMRSVLVSMVYNKGLTLSCQAKQ--SYTSGEIINFMTVDAERIGDFGWYMHDPWLVILQVSL 430 (1300)
Q Consensus 353 ~~~l~~~~~~~~~~~~g~~ir~~L~~~Iy~K~L~ls~~~~~--~~~~G~Ivnl~s~Dv~~i~~~~~~~~~~~~~~l~i~~ 430 (1300)
+++++.+++++...+.+.++|.+|...+|+|+++++..+.. +.++|+++|+|++|++++.+++.++|.+|..|+++++
T Consensus 297 ~~~~~~~~~~~~~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~~~~l~~~Pl~li~ 376 (1560)
T PTZ00243 297 IQSVCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQYCMYLWSSPMVLLL 376 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987765 5689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHH
Q 000755 431 ALLILYKNLGLASIAALFATVLIMLTNFPLGRLQENFQDKLMGSKDKRMKVTSEILRNMRILKLQGWEMKFLSKIIELRK 510 (1300)
Q Consensus 431 ~l~lL~~~lg~~~l~~l~~~~l~~~~~~~~~k~~~~~~~~~~~~~d~r~~~~~E~L~~ir~IK~~~~E~~f~~~i~~~R~ 510 (1300)
++++||..+|+++++|+++++++++++.+++|++.++++++|+.+|+|++.++|+++|||+||+++||+.|.+++++.|+
T Consensus 377 ~~~lL~~~lG~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~ 456 (1560)
T PTZ00243 377 SILLLSRLVGWCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRA 456 (1560)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 511 IEAGWLKKFLYTGAMTSFVFWGAPTFVSVATFGACMLLGIPLESGKILSALATFRILQEPIYNLPDTISMIIQTKVSLDR 590 (1300)
Q Consensus 511 ~E~~~l~~~~~~~~~~~~~~~~~p~~v~~~~f~~~~~~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vs~~R 590 (1300)
+|++.+++..+...+..++.+.+|.++.+++|++|.+.|++||++.+|+++++|+++..|+..+|..++.+.++.+|++|
T Consensus 457 ~El~~l~~~~~~~~~~~~~~~~~p~l~~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~R 536 (1560)
T PTZ00243 457 RELRYLRDVQLARVATSFVNNATPTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKR 536 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCcccc----c-----------------------------CCC-------------------------CCC
Q 000755 591 IASFLCLDDLQSDVV----E-----------------------------KHP-------------------------RGS 612 (1300)
Q Consensus 591 I~~fL~~~e~~~~~~----~-----------------------------~~~-------------------------~~~ 612 (1300)
|++||..+|...... + ..+ ...
T Consensus 537 I~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (1560)
T PTZ00243 537 ISTFLECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRH 616 (1560)
T ss_pred HHHHHcCccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccc
Confidence 999998765211000 0 000 000
Q ss_pred CcceEEEEeEEEEecCC-------------------------------------CCCCceecceeEEeCCcEEEEEcCCC
Q 000755 613 SETAIEIVDGNFAWDIS-------------------------------------SNNPTLRDINLKVFHGMRVAVCGTVG 655 (1300)
Q Consensus 613 ~~~~I~i~~~~fs~~~~-------------------------------------~~~~~L~~i~l~i~~G~~~~ivG~~G 655 (1300)
....+.++|++|+|+.. .++++|+|+||+|++|++++|+|+||
T Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nG 696 (1560)
T PTZ00243 617 PSPSVVVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATG 696 (1560)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCC
Confidence 11246677777765410 13468999999999999999999999
Q ss_pred CChHHHHHHHhccccCCccEEEEcCeEEEEecCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhhccCCCcccc
Q 000755 656 SGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVI 735 (1300)
Q Consensus 656 sGKSTLl~~llG~~~~~~G~i~~~g~~ayv~Q~~~l~~~Ti~eNI~fg~~~~~~~~~~vl~~~~l~~dl~~l~~Gd~t~i 735 (1300)
||||||+++|+|+++|++|+|.+++.++||+|+||++++||+|||.|+.++++++|++++++|++++|++.+|+|++|.+
T Consensus 697 sGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i 776 (1560)
T PTZ00243 697 SGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEI 776 (1560)
T ss_pred CcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHh
Confidence 99999999999999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCccccCCEEEEEeC
Q 000755 736 GERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKD 815 (1300)
Q Consensus 736 ge~g~~LSGGQkqRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~~d~i~~l~~ 815 (1300)
|++|.+|||||||||+||||+|++|+|||||||||+||++++++++++++.+.++++|+|+|||+++.++.||+|++|++
T Consensus 777 ~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~ 856 (1560)
T PTZ00243 777 GEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGD 856 (1560)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999999888777789999999999999999999999999
Q ss_pred CeEEEecChHHHHhcCchHHHHHHHHHHHhh--h--h--c--ccCC---------CC--cccc--ccc---c-----cc-
Q 000755 816 GKITQAGKYNDILNSGTDFMVLVGAHQQALS--A--L--D--SIEG---------GP--VSER--ISM---N-----KE- 865 (1300)
Q Consensus 816 G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~--~--~--~--~~~~---------~~--~~~~--~~~---~-----~~- 865 (1300)
|++++.|+++++++.+ .+..+........+ . . + ..+. .+ .... ... . .+
T Consensus 857 G~i~~~G~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 935 (1560)
T PTZ00243 857 GRVEFSGSSADFMRTS-LYATLAAELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAEGGDGAALDAAAGRL 935 (1560)
T ss_pred CEEEEecCHHHHHhCh-HHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccchh
Confidence 9999999999998753 35544432111000 0 0 0 0000 00 0000 000 0 00
Q ss_pred CCCccccccc----------------------------------------------------------------------
Q 000755 866 NGGMDTTNGV---------------------------------------------------------------------- 875 (1300)
Q Consensus 866 ~~~e~~~~g~---------------------------------------------------------------------- 875 (1300)
..+|++..|.
T Consensus 936 ~~~e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~l~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~l~~y~~~~~~~~~~~ 1015 (1560)
T PTZ00243 936 MTREEKASGSVPWSTYVAYLRFCGGLHAAGFVLATFAVTELVTVSSGVWLSMWSTRSFKLSAATYLYVYLGIVLLGTFSV 1015 (1560)
T ss_pred hhHHHHhcCcccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcccHHHHHHHHHHHHHHHH
Confidence 1112222221
Q ss_pred -----------------------------------cccCcc--ccccccc--h---------------------------
Q 000755 876 -----------------------------------TMKEGN--EDIQTDK--V--------------------------- 889 (1300)
Q Consensus 876 -----------------------------------~lp~gr--nr~s~D~--v--------------------------- 889 (1300)
+.|.|+ |||++|+ +
T Consensus 1016 ~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~ 1095 (1560)
T PTZ00243 1016 PLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSA 1095 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 118899 9999999 3
Q ss_pred ------------------hhhhhhHHHHHHHHHHhhhhhhHHHHHHHHhhchHHHHHhcchHHHHHHHHHHHHhhcchHH
Q 000755 890 ------------------DEQYYIPSARELSRLVGVCKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKF 951 (1300)
Q Consensus 890 ------------------~~~~y~~~~r~l~rl~~~~~sp~~~~~~E~l~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~ 951 (1300)
+..+|.+..|+++|+...+++|++++++|+++|+.|||+|++++.|.+++.+..|.+.+..+
T Consensus 1096 ~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~ 1175 (1560)
T PTZ00243 1096 SQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSY 1175 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHH
Confidence 35678889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 952 HIAGAMEWLCFRLDMLSSLTFAFSLVLLI---SIPKGVIEPAIAGLAVTYGLNLNMLQAWVIWNLCNLENKIISVERILQ 1028 (1300)
Q Consensus 952 ~~~~~~~wl~~~l~~~~~~~~~~~~~~~~---~~~~g~~~~~~~gl~l~~~~~~~~~~~~~~~~~~~le~~~~sveRi~~ 1028 (1300)
.....++|+..+++++..+++++++++.+ ....+.+++|.++++++|+..+..++.++++.+.++|+.+.|+||+.+
T Consensus 1176 ~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~ 1255 (1560)
T PTZ00243 1176 LENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLY 1255 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988776544433322 223455789999999999999999999999999999999999999999
Q ss_pred hhc-CCCCCCCc-----------------------cccCCCC---CCCCCCceEEEEeeeeeeCCCCCcceeeeeEEeeC
Q 000755 1029 YTC-ISSEPPLV-----------------------IEESRPD---CSWPTHGEVDILNLQVRYAPHLPLVLRGLTCTFPG 1081 (1300)
Q Consensus 1029 ~~~-~~~e~~~~-----------------------~~~~~~~---~~wp~~g~i~~~~v~~~y~~~~~~vL~~isl~i~~ 1081 (1300)
|++ .|+|+... .+...++ +.||..|.|+|+||+++|+++.+++|+||||+|++
T Consensus 1256 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~ 1335 (1560)
T PTZ00243 1256 YTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRGVSFRIAP 1335 (1560)
T ss_pred HHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCceeecceEEECC
Confidence 996 44432110 0011122 23556789999999999988777899999999999
Q ss_pred CcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEEEcCCCCCCcccHHHhcCCCCCCCHHHH
Q 000755 1082 GMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEEYKDEEI 1161 (1300)
Q Consensus 1082 Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~vpQ~~~lf~gTvr~Nl~~~~~~~d~~i 1161 (1300)
||+||||||||||||||+++|+|+++|++|+|.|||+||++++++++|++|++|||||++|+||||+||+|+.+++|+++
T Consensus 1336 GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI 1415 (1560)
T PTZ00243 1336 REKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEV 1415 (1560)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999989999999
Q ss_pred HHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccC-CCEEEEeCCCcCCCHHHHHHHHHHHHHhcCC
Q 000755 1162 WEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKK-SKVLVLDEATASVDTATDNLIQQTLRQHFSD 1240 (1300)
Q Consensus 1162 ~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~-~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~ 1240 (1300)
|+|++++++++++.++|+||||.|+|+|.|||||||||+||||||+++ |+|||||||||+||++|++.|+++|++.+++
T Consensus 1416 ~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~ 1495 (1560)
T PTZ00243 1416 WAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSA 1495 (1560)
T ss_pred HHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCC
Confidence 999999999999999999999999999999999999999999999996 8999999999999999999999999999999
Q ss_pred cEEEEEeCChhhhhccCEEEEEeCCEEEEecChhhHHhcCCChHHHHHHHHhhh
Q 000755 1241 CTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLVAEYTQR 1294 (1300)
Q Consensus 1241 ~Tvi~iaHrl~~i~~~D~v~vl~~G~i~e~g~~~~l~~~~~~~f~~l~~~~~~~ 1294 (1300)
+|||+||||++++.+||+|+||++|+|+|+|+|++|+++++|.|++|+++....
T Consensus 1496 ~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~~~~ 1549 (1560)
T PTZ00243 1496 YTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALGRS 1549 (1560)
T ss_pred CEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhChh
Confidence 999999999999999999999999999999999999987789999999887643
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-128 Score=1206.64 Aligned_cols=923 Identities=23% Similarity=0.292 Sum_probs=712.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhcCCCHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHH
Q 000755 359 RHWMFRLQVAGIKMRSVLVSMVYNKGLTLSCQAKQSYTSGEIINFMTVDAERIGDFGWY-MHDPWLVILQVSLALLILYK 437 (1300)
Q Consensus 359 ~~~~~~~~~~g~~ir~~L~~~Iy~K~L~ls~~~~~~~~~G~Ivnl~s~Dv~~i~~~~~~-~~~~~~~~l~i~~~l~lL~~ 437 (1300)
..|.+...|...++|. ...+..||.....++.+.+|++++.|+.|++++.+.+.. +-.+......++..+++-+.
T Consensus 93 ~c~~~~geRq~~riR~----~yl~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~ 168 (1228)
T KOG0055|consen 93 SCWMRTGERQTARIRS----KYLKAILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFY 168 (1228)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHhCccceeecccccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555 455566666778888888999999999999999987532 11111112222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Q 000755 438 NLGLASIAALFATVLIMLTNFPLGRLQENFQDKLMGSKDKRMKVTSEILRNMRILKLQGWEMKFLSKIIELRKIEAGWLK 517 (1300)
Q Consensus 438 ~lg~~~l~~l~~~~l~~~~~~~~~k~~~~~~~~~~~~~d~r~~~~~E~L~~ir~IK~~~~E~~f~~~i~~~R~~E~~~l~ 517 (1300)
.-...+++++.+.+++......+++.+.+...+.+++..+--+...|.+.++|++-.|+-|+...++..+.-+.-.+.-.
T Consensus 169 ~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi 248 (1228)
T KOG0055|consen 169 YGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGI 248 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHH
Confidence 22234556666777777777788888888888888888888899999999999999999999888877654333333322
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000755 518 KFLYTGAMTSFV--FWGAPTFVSVATFGACMLLGIPLESGKILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIASFL 595 (1300)
Q Consensus 518 ~~~~~~~~~~~~--~~~~p~~v~~~~f~~~~~~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL 595 (1300)
+......+.... ++........++||..++..+..++|.+++.+...-+-...+.+....+..+..+++|..+|.+.+
T Consensus 249 ~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i 328 (1228)
T KOG0055|consen 249 KKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETI 328 (1228)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHh
Confidence 222222222211 223333445677887777778899999888776555566778888888999999999999999988
Q ss_pred cCCCCC-cccccCCCCCCCcceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCcc
Q 000755 596 CLDDLQ-SDVVEKHPRGSSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISG 674 (1300)
Q Consensus 596 ~~~e~~-~~~~~~~~~~~~~~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G 674 (1300)
+..+.. .............+.|+++|+.|+||..++.++|+|+||+|++|+.+|+||+|||||||++++|.|+|+|++|
T Consensus 329 ~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G 408 (1228)
T KOG0055|consen 329 DRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSG 408 (1228)
T ss_pred cCCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCc
Confidence 654332 2211222233456789999999999987778999999999999999999999999999999999999999999
Q ss_pred EEEEcC-------------eEEEEecCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhhccCCCcccccCCCC
Q 000755 675 TLKLCG-------------TKAYVAQSPWIQSGNIEDNILFGKP-MDREKYDRVLEACSLKKDLEILSFGDQTVIGERGI 740 (1300)
Q Consensus 675 ~i~~~g-------------~~ayv~Q~~~l~~~Ti~eNI~fg~~-~~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~ 740 (1300)
+|.++| +++.|.|+|.+|++||+|||.||+| .+.++..++++.+...+++..+|+|++|.+||+|.
T Consensus 409 ~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~ 488 (1228)
T KOG0055|consen 409 EVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGV 488 (1228)
T ss_pred eEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCC
Confidence 999998 3699999999999999999999997 58899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCccccCCEEEEEeCCeEEE
Q 000755 741 NLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQ 820 (1300)
Q Consensus 741 ~LSGGQkqRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~~d~i~~l~~G~i~~ 820 (1300)
.|||||||||||||||.+||+||||||||||||++.++.+ ++++....+|+|.|+|+||++.+++||+|++|++|+|+|
T Consensus 489 qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~V-q~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE 567 (1228)
T KOG0055|consen 489 QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVV-QEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVE 567 (1228)
T ss_pred CCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHH-HHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999996655 788999999999999999999999999999999999999
Q ss_pred ecChHHHHhcCchHHHHHHHHHHHhhhhc--ccCCC----Ccc----------cccc-c--------ccc-----CCCcc
Q 000755 821 AGKYNDILNSGTDFMVLVGAHQQALSALD--SIEGG----PVS----------ERIS-M--------NKE-----NGGMD 870 (1300)
Q Consensus 821 ~g~~~~l~~~~~~~~~l~~~~~~~~~~~~--~~~~~----~~~----------~~~~-~--------~~~-----~~~e~ 870 (1300)
.|+|+||++.++.|.+++..++......+ ..++. ..+ .+.. . ..+ ..+++
T Consensus 568 ~G~h~ELi~~~G~Y~~lv~~Q~~~~~~~~~~~~~~~~~~~~~s~~~s~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 647 (1228)
T KOG0055|consen 568 QGTHDELIALGGIYSSLVRLQELEKAAEDEEEEESLKEERSRSLKSSSSSPSLSRGSNRSNLLSVKPEGEDPEEPVSEED 647 (1228)
T ss_pred ecCHHHHHhccchHHHHHHHHhhhhhhhccccccchhhhhhhccccccccccccCCcccccccccccccccccccccccc
Confidence 99999999999999999887653332110 00000 000 0000 0 000 00000
Q ss_pred ccccc---------------------------------------------------------------------------
Q 000755 871 TTNGV--------------------------------------------------------------------------- 875 (1300)
Q Consensus 871 ~~~g~--------------------------------------------------------------------------- 875 (1300)
...+-
T Consensus 648 ~~~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~~q 727 (1228)
T KOG0055|consen 648 EKVSFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNFLQ 727 (1228)
T ss_pred ccccHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000
Q ss_pred -------------cc--------------------cCcc--ccccccc--h-----------------------------
Q 000755 876 -------------TM--------------------KEGN--EDIQTDK--V----------------------------- 889 (1300)
Q Consensus 876 -------------~l--------------------p~gr--nr~s~D~--v----------------------------- 889 (1300)
++ -+|+ +|+++|. +
T Consensus 728 ~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~ 807 (1228)
T KOG0055|consen 728 HYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENSGALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYG 807 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 1266 7888887 2
Q ss_pred ---------------hhhhh-hHHHHHHHHHHhhhhhhHHHHHHHHhhchHHHHHhcchHHHHHHHHHHHHhhcchHHHH
Q 000755 890 ---------------DEQYY-IPSARELSRLVGVCKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFHI 953 (1300)
Q Consensus 890 ---------------~~~~y-~~~~r~l~rl~~~~~sp~~~~~~E~l~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~ 953 (1300)
+..|. ........+-.............|+++.++||++|+.|++|.+.+.+..+.-.+..+..
T Consensus 808 W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~ 887 (1228)
T KOG0055|consen 808 WRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKR 887 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 00000011111111223446678999999999999999999999988887766555443
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHH-HHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000755 954 AGAMEWLCFRLDMLSS---LTFAFSLVL-LISIPKGVIEPAIAGLAVTYGLNLNMLQAWVIWNLCNLENKIISVERILQY 1029 (1300)
Q Consensus 954 ~~~~~wl~~~l~~~~~---~~~~~~~~~-~~~~~~g~~~~~~~gl~l~~~~~~~~~~~~~~~~~~~le~~~~sveRi~~~ 1029 (1300)
. .|-++...+-.+ +..+++..+ ...+..|..++..+-..+.....-...+........+.-+...|+.++++.
T Consensus 888 ~---~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i 964 (1228)
T KOG0055|consen 888 G---LISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEI 964 (1228)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHH
Confidence 3 233333222222 222333333 234567778877666555555555555666777778889999999999999
Q ss_pred hcCCCCCCCccccCCCCCCCCCCceEEEEeeeeeeCCCC-CcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCC
Q 000755 1030 TCISSEPPLVIEESRPDCSWPTHGEVDILNLQVRYAPHL-PLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEP 1108 (1300)
Q Consensus 1030 ~~~~~e~~~~~~~~~~~~~wp~~g~i~~~~v~~~y~~~~-~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p 1108 (1300)
++.+++-+...+.. ....+-+|+|+++||+|+|+... .+||+|+|++|++|+.+||||||||||||.+.+|-|+|+|
T Consensus 965 ~dr~~~i~~~~~~~--~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp 1042 (1228)
T KOG0055|consen 965 LDRKPTIDPDSTSG--GKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDP 1042 (1228)
T ss_pred hcCCCCCCCCCCCC--CccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 98765322111111 01113579999999999997432 3699999999999999999999999999999999999999
Q ss_pred CcceEEECCeecCCCCHHHHhcccEEEcCCCCCCcccHHHhcCCC-CCCCHHHHHHHHHHcCCcHHHHhhcCCCcccccc
Q 000755 1109 TAGEIVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPL-EEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTE 1187 (1300)
Q Consensus 1109 ~~G~I~idg~di~~i~~~~lr~~i~~vpQ~~~lf~gTvr~Nl~~~-~~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e 1187 (1300)
++|.|.|||.||.+++++.||++|++|.|||.||++|||||+.+. ...+.+|+.+|++.++.++||.++|+||||.|||
T Consensus 1043 ~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGe 1122 (1228)
T KOG0055|consen 1043 DAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGE 1122 (1228)
T ss_pred CCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCc
Confidence 999999999999999999999999999999999999999999987 4579999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhccCEEEEEeCCEE
Q 000755 1188 NGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGII 1267 (1300)
Q Consensus 1188 ~G~~LSgGqrQrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~~D~v~vl~~G~i 1267 (1300)
+|.+||||||||+|||||++|||+|||||||||+||.++++.+|++|++...++|.|+||||++|+.+||.|.|+++|+|
T Consensus 1123 rG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~V 1202 (1228)
T KOG0055|consen 1123 RGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKV 1202 (1228)
T ss_pred ccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecChhhHHhcCCChHHHHHHHHh
Q 000755 1268 EEYDSPTKLLENKSSSFAQLVAEYT 1292 (1300)
Q Consensus 1268 ~e~g~~~~l~~~~~~~f~~l~~~~~ 1292 (1300)
+|.|+|++|++ ++|.|++|++.+.
T Consensus 1203 vE~GtH~~L~~-~~G~Y~~Lv~~q~ 1226 (1228)
T KOG0055|consen 1203 VEQGTHDELLA-KRGIYFRLVQLQS 1226 (1228)
T ss_pred EecccHHHHHh-CCCchHHHhhhcc
Confidence 99999999998 6899999998653
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-121 Score=1222.08 Aligned_cols=997 Identities=19% Similarity=0.215 Sum_probs=750.7
Q ss_pred chhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 288 FKLTKALFFSAWKEIVFTAILALLYTLANYVGPYLIDTFVQYLNGEREFKNEGYVLVSTFFVAKIVECLAQRHWMFRLQV 367 (1300)
Q Consensus 288 ~~l~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~ 367 (1300)
+.+++...+.+++.++++.+++++..++..+.|+++..+++.+..... ...+++.+++..++..++...+.+...+
T Consensus 48 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 123 (1466)
T PTZ00265 48 FLPFKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGEN----VNDIIFSLVLIGIFQFILSFISSFCMDV 123 (1466)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556678888888999999999999999999999997642211 1112233333444455556666677788
Q ss_pred HHHHHHHHHHHHHHHHHhcCCchhhcCCCHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 000755 368 AGIKMRSVLVSMVYNKGLTLSCQAKQSYTSGEIINFMTVDAERIGDFGW-YMHDPWLVILQVSLALLI-LYKNLGLASIA 445 (1300)
Q Consensus 368 ~g~~ir~~L~~~Iy~K~L~ls~~~~~~~~~G~Ivnl~s~Dv~~i~~~~~-~~~~~~~~~l~i~~~l~l-L~~~lg~~~l~ 445 (1300)
++.++...++..+|+|.++++...+++.++|++++.++.|++.+.+.+. .+..+...++.++.++++ ++..+.++. +
T Consensus 124 ~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw~Lal-v 202 (1466)
T PTZ00265 124 VTTKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTL-C 202 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-H
Confidence 8999999999999999999999999999999999999999999988653 344444444444444443 444555543 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 446 ALFATVLIMLTNFPLGRLQENFQDKLMGSKDKRMKVTSEILRNMRILKLQGWEMKFLSKIIELRKIEAGWLKKFLYTGAM 525 (1300)
Q Consensus 446 ~l~~~~l~~~~~~~~~k~~~~~~~~~~~~~d~r~~~~~E~L~~ir~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~~~~~ 525 (1300)
.++++++++++..++.++.++..++..+..++..+.+.|.++||++||.|+.|+.+.+++.+..+...+...+......+
T Consensus 203 ~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~ 282 (1466)
T PTZ00265 203 ITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESL 282 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555566677788888888888888889999999999999999999999999988865433333322222222222
Q ss_pred HHHHHH--HHHHHHHHHHHHHHHHhcC--------CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000755 526 TSFVFW--GAPTFVSVATFGACMLLGI--------PLESGKILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIASFL 595 (1300)
Q Consensus 526 ~~~~~~--~~p~~v~~~~f~~~~~~~~--------~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL 595 (1300)
...+.. .....+.++++|++.+..+ .+++|.+++++....+...++..+...+..+..+.+|.+||.+++
T Consensus 283 ~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii 362 (1466)
T PTZ00265 283 HIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEII 362 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 1122344556777777653 578888887665554445556666667889999999999999999
Q ss_pred cCCCCCcccccCCCCCCCcceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccE
Q 000755 596 CLDDLQSDVVEKHPRGSSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGT 675 (1300)
Q Consensus 596 ~~~e~~~~~~~~~~~~~~~~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~ 675 (1300)
+.++..+......... ....|+++|++|+|+...+.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+
T Consensus 363 ~~~~~~~~~~~~~~~~-~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~ 441 (1466)
T PTZ00265 363 NRKPLVENNDDGKKLK-DIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGD 441 (1466)
T ss_pred cCCCCCCCCCCCccCC-CCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCe
Confidence 7654322111111111 123699999999997543457999999999999999999999999999999999999999999
Q ss_pred EEEc-C-------------eEEEEecCCcCCCCCHHHHHhcCCC------------------------------------
Q 000755 676 LKLC-G-------------TKAYVAQSPWIQSGNIEDNILFGKP------------------------------------ 705 (1300)
Q Consensus 676 i~~~-g-------------~~ayv~Q~~~l~~~Ti~eNI~fg~~------------------------------------ 705 (1300)
|.++ | .++||+|+|.+|++||+|||.+|.+
T Consensus 442 I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (1466)
T PTZ00265 442 IIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGD 521 (1466)
T ss_pred EEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccch
Confidence 9994 3 2699999999999999999999741
Q ss_pred ----------------------CCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCEE
Q 000755 706 ----------------------MDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIY 763 (1300)
Q Consensus 706 ----------------------~~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLARAly~~~~il 763 (1300)
.++++..++++.+++++++..+|+|++|.+|++|.+|||||||||+||||++++|+||
T Consensus 522 ~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~IL 601 (1466)
T PTZ00265 522 LNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKIL 601 (1466)
T ss_pred hhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 2456788899999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEecCCCccccCCEEEEEeCC-------------------------
Q 000755 764 LFDDPFSAVDAHTGSHLFKEVLLGLL--RSKTVIYVTHQVEFLPAADLILVMKDG------------------------- 816 (1300)
Q Consensus 764 lLDep~saLD~~t~~~i~~~~~~~~l--~~~TvIlvtH~~~~l~~~d~i~~l~~G------------------------- 816 (1300)
|||||||+||++++..+.+ .+..+. +++|+|+||||++.+..||+|++|++|
T Consensus 602 lLDEpTSaLD~~se~~i~~-~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 680 (1466)
T PTZ00265 602 ILDEATSSLDNKSEYLVQK-TINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNK 680 (1466)
T ss_pred EEeCcccccCHHHHHHHHH-HHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCccccccccccccccccccccccccc
Confidence 9999999999999888864 555554 489999999999999999999999986
Q ss_pred ----------------------eEEEecChHHHHh-cCchHHHHHHHHHHHhhhh-----c--c----c--C-CC-Cc--
Q 000755 817 ----------------------KITQAGKYNDILN-SGTDFMVLVGAHQQALSAL-----D--S----I--E-GG-PV-- 856 (1300)
Q Consensus 817 ----------------------~i~~~g~~~~l~~-~~~~~~~l~~~~~~~~~~~-----~--~----~--~-~~-~~-- 856 (1300)
+|+++|+|+||++ .++.|..++..+....... + . . . .. ..
T Consensus 681 ~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 760 (1466)
T PTZ00265 681 NNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSDMKSSAYKDSERGYDP 760 (1466)
T ss_pred cccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhcccccccccccccccccccccccccccccccc
Confidence 5999999999997 5788888875542110000 0 0 0 0 00 00
Q ss_pred ---c----cc-c--------cc--c--ccCCCc------------ccccc-c----------------------------
Q 000755 857 ---S----ER-I--------SM--N--KENGGM------------DTTNG-V---------------------------- 875 (1300)
Q Consensus 857 ---~----~~-~--------~~--~--~~~~~e------------~~~~g-~---------------------------- 875 (1300)
. .+ . .. . .+..++ ....+ .
T Consensus 761 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 840 (1466)
T PTZ00265 761 DEMNGNSKHENESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYKKDVTIIALSILVAGGL 840 (1466)
T ss_pred ccccccccccccccccccccccccccccchhccccchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00 0 00 0 000000 00011 0
Q ss_pred ----------------------------------------------------------------------c---------
Q 000755 876 ----------------------------------------------------------------------T--------- 876 (1300)
Q Consensus 876 ----------------------------------------------------------------------~--------- 876 (1300)
.
T Consensus 841 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~ 920 (1466)
T PTZ00265 841 YPVFALLYAKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQD 920 (1466)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC
Confidence 0
Q ss_pred -ccCcc--ccccccc--h------------------------------------------hhhhhhHHHHHHH--H---H
Q 000755 877 -MKEGN--EDIQTDK--V------------------------------------------DEQYYIPSARELS--R---L 904 (1300)
Q Consensus 877 -lp~gr--nr~s~D~--v------------------------------------------~~~~y~~~~r~l~--r---l 904 (1300)
.++|+ +|++.|. + +...+....+... + .
T Consensus 921 ~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1000 (1466)
T PTZ00265 921 KHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAIRARLTANKDVEKK 1000 (1466)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 02355 6777776 2 0011111111111 0 0
Q ss_pred -------------HhhhhhhHHHHHHHHhhchHHHHHhcchHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHH
Q 000755 905 -------------VGVCKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFHIAGAMEWLCFRLDMLSSLT 971 (1300)
Q Consensus 905 -------------~~~~~sp~~~~~~E~l~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~ 971 (1300)
+....+.....+.|+++|++|||+|+.|+.+.+++.+..+...+..........++....+.+..+.
T Consensus 1001 ~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1080 (1466)
T PTZ00265 1001 EINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFI 1080 (1466)
T ss_pred hccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111334577899999999999999999999999988887776655544444333333344443333
Q ss_pred HHHHHHH-HHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccCCC-CCCC
Q 000755 972 FAFSLVL-LISIPKGVIEPAIAGLAVTYGLNLNMLQAWVIWNLCNLENKIISVERILQYTCISSEPPLVIEESRP-DCSW 1049 (1300)
Q Consensus 972 ~~~~~~~-~~~~~~g~~~~~~~gl~l~~~~~~~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~-~~~w 1049 (1300)
.++++++ ...+..|.++.+.+..++.+.+........+...+.++++...|.+|+.++++.+++.+.......+ +...
T Consensus 1081 ~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~ 1160 (1466)
T PTZ00265 1081 NSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKN 1160 (1466)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCC
Confidence 3333333 2345578888887766665554444456667788889999999999999999876542211011110 0012
Q ss_pred CCCceEEEEeeeeeeCCC-CCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCC--------------------
Q 000755 1050 PTHGEVDILNLQVRYAPH-LPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEP-------------------- 1108 (1300)
Q Consensus 1050 p~~g~i~~~~v~~~y~~~-~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p-------------------- 1108 (1300)
+..|.|+|+||+|+|+++ ..+||+|+||+|++|+++||||+||||||||+++|.|+|+|
T Consensus 1161 ~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~ 1240 (1466)
T PTZ00265 1161 DIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQ 1240 (1466)
T ss_pred CCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccc
Confidence 345789999999999743 24699999999999999999999999999999999999999
Q ss_pred ----------------------------------CcceEEECCeecCCCCHHHHhcccEEEcCCCCCCcccHHHhcCCC-
Q 000755 1109 ----------------------------------TAGEIVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPL- 1153 (1300)
Q Consensus 1109 ----------------------------------~~G~I~idg~di~~i~~~~lr~~i~~vpQ~~~lf~gTvr~Nl~~~- 1153 (1300)
++|+|++||+|+++++.+++|++|+||||||+||+|||||||.+.
T Consensus 1241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~ 1320 (1466)
T PTZ00265 1241 DYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGK 1320 (1466)
T ss_pred ccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCC
Confidence 699999999999999999999999999999999999999999886
Q ss_pred CCCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHH
Q 000755 1154 EEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQT 1233 (1300)
Q Consensus 1154 ~~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~ 1233 (1300)
.+.+|+++++|++.++++++|.++|+||||.|||+|.+||||||||+||||||+++|+|||||||||+||+++++.|+++
T Consensus 1321 ~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~ 1400 (1466)
T PTZ00265 1321 EDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKT 1400 (1466)
T ss_pred CCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhc--CCcEEEEEeCChhhhhccCEEEEEeC----CEE-EEecChhhHHhcCCChHHHHHHHH
Q 000755 1234 LRQHF--SDCTVITIAHRITSVIDSDMVLLLSH----GII-EEYDSPTKLLENKSSSFAQLVAEY 1291 (1300)
Q Consensus 1234 l~~~~--~~~Tvi~iaHrl~~i~~~D~v~vl~~----G~i-~e~g~~~~l~~~~~~~f~~l~~~~ 1291 (1300)
|++.. +++|+|+||||++++..||+|+||++ |++ +|.|+|++|+++++|.|++|++.+
T Consensus 1401 L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g~Y~~l~~~~ 1465 (1466)
T PTZ00265 1401 IVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYVKLA 1465 (1466)
T ss_pred HHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhcCCChHHHHHhhc
Confidence 99874 68999999999999999999999999 995 489999999975679999999764
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-76 Score=701.56 Aligned_cols=548 Identities=23% Similarity=0.292 Sum_probs=453.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 291 TKALFFSAWKEIVFTAILALLYTLANYVGPYLIDTFVQYLNG-EREFKNEGYVLVSTFFVAKIVECLAQRHWMFRLQVAG 369 (1300)
Q Consensus 291 ~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~l~~-~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~g 369 (1300)
++.+.+..|+.+..+.++.++..+.....|.++.+++|.+.. .+... .-.-...++....++.+++.....+..+..+
T Consensus 138 l~~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~-~~~~~~~~l~~l~~~~a~~~~~r~~~~~~a~ 216 (716)
T KOG0058|consen 138 LLGLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSAD-ALKRACTILLGLFLIGALANAIRGGLLQYAG 216 (716)
T ss_pred HHHHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667789999999999999999999999999999998866 22211 1111122233334445666666666677788
Q ss_pred HHHHHHHHHHHHHHHhcCCchhhcCCCHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 000755 370 IKMRSVLVSMVYNKGLTLSCQAKQSYTSGEIINFMTVDAERIGDFG-WYMHDPWLVILQVSLALLI-LYKNLGLASIAAL 447 (1300)
Q Consensus 370 ~~ir~~L~~~Iy~K~L~ls~~~~~~~~~G~Ivnl~s~Dv~~i~~~~-~~~~~~~~~~l~i~~~l~l-L~~~lg~~~l~~l 447 (1300)
.++-..|+..+|+++++....+++++.+||++|+++.|++.+.+.+ .++....-..++.+.++.+ ++..+.++. +.+
T Consensus 217 ~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltl-v~~ 295 (716)
T KOG0058|consen 217 ERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTL-VTL 295 (716)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHH-HHH
Confidence 8888999999999999999999999999999999999999998854 4566666666666665554 455666554 445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Q 000755 448 FATVLIMLTNFPLGRLQENFQDKLMGSKDKRMKVTSEILRNMRILKLQGWEMKFLSKIIELRKIEAGWLKKFLYTGA--M 525 (1300)
Q Consensus 448 ~~~~l~~~~~~~~~k~~~~~~~~~~~~~d~r~~~~~E~L~~ir~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~~~~--~ 525 (1300)
+.+.+++.+...+++.+++..++..++..+-.+...|.|++||+||.|+.|+...++..+.-+.-.+..+|...... .
T Consensus 296 i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f~ 375 (716)
T KOG0058|consen 296 IVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYGIFF 375 (716)
T ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHhH
Confidence 55666666778899999999999999999999999999999999999999987666654432211121122111111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc
Q 000755 526 TSFVFWGAPTFVSVATFGACMLLGIPLESGKILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIASFLCLDDLQSDVV 605 (1300)
Q Consensus 526 ~~~~~~~~p~~v~~~~f~~~~~~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~ 605 (1300)
...-+......++++.+|.+++.++.||.|.+.+++.+-..+..++..+...++.++++..|.+|+.++++.++.-+...
T Consensus 376 ~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~G 455 (716)
T KOG0058|consen 376 GSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLTG 455 (716)
T ss_pred hHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCCC
Confidence 11112223346778889999999999999999999999999999999999999999999999999999998755433222
Q ss_pred cCCCCCCCcceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe----
Q 000755 606 EKHPRGSSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT---- 681 (1300)
Q Consensus 606 ~~~~~~~~~~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~---- 681 (1300)
...|. ...+.|+|+||+|+||..++.++|+|+||+|+|||.+|+||||||||||+.++|+.+|+|++|+|.+||.
T Consensus 456 ~~~p~-~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~ 534 (716)
T KOG0058|consen 456 TLAPD-HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISD 534 (716)
T ss_pred ccccc-cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhh
Confidence 22332 4567899999999999888899999999999999999999999999999999999999999999999993
Q ss_pred ---------EEEEecCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHH
Q 000755 682 ---------KAYVAQSPWIQSGNIEDNILFGKP-MDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQ 751 (1300)
Q Consensus 682 ---------~ayv~Q~~~l~~~Ti~eNI~fg~~-~~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRia 751 (1300)
||+|.|+|.+|++||+|||.+|.+ .++|+++++.+.+..++++..+|+|++|.+||+|..||||||||||
T Consensus 535 ~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIA 614 (716)
T KOG0058|consen 535 INHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIA 614 (716)
T ss_pred cCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHH
Confidence 699999999999999999999987 6889999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHhcC
Q 000755 752 IARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSG 831 (1300)
Q Consensus 752 LARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 831 (1300)
|||||++||.||||||+|||||++++. +.++.+...++++|||+|+||++++++||+|+|+++|+++|.|+|+|+++..
T Consensus 615 IARALlr~P~VLILDEATSALDaeSE~-lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~~~ 693 (716)
T KOG0058|consen 615 IARALLRNPRVLILDEATSALDAESEY-LVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLSKP 693 (716)
T ss_pred HHHHHhcCCCEEEEechhhhcchhhHH-HHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHhhCc
Confidence 999999999999999999999999965 4588888889999999999999999999999999999999999999999887
Q ss_pred -chHHHHHHHHH
Q 000755 832 -TDFMVLVGAHQ 842 (1300)
Q Consensus 832 -~~~~~l~~~~~ 842 (1300)
+.|.+++..+.
T Consensus 694 ~gly~~Lv~~q~ 705 (716)
T KOG0058|consen 694 NGLYAKLVQRQL 705 (716)
T ss_pred ccHHHHHHHHhc
Confidence 67888876543
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-74 Score=724.10 Aligned_cols=546 Identities=24% Similarity=0.274 Sum_probs=430.5
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 289 KLTKALFFSAWKEIVFTAILALLYTLANYVGPYLIDTFVQYLNGEREFKNEGYVLVSTFFVAKIVECLAQRHWMFRLQVA 368 (1300)
Q Consensus 289 ~l~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~ 368 (1300)
+.++.+.+.+++.+++..++.++..++..+.|++++.++|.+...+......+.+++++++..++..++.....+...+.
T Consensus 11 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (588)
T PRK11174 11 RWLKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVGFKA 90 (588)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666778889999999999999999999999999999997642111111223334445555566677777777778889
Q ss_pred HHHHHHHHHHHHHHHHhcCCchhhcCCCHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 000755 369 GIKMRSVLVSMVYNKGLTLSCQAKQSYTSGEIINFMTVDAERIGDFGW-YMHDPWLVILQVSLALLIL-YKNLGLASIAA 446 (1300)
Q Consensus 369 g~~ir~~L~~~Iy~K~L~ls~~~~~~~~~G~Ivnl~s~Dv~~i~~~~~-~~~~~~~~~l~i~~~l~lL-~~~lg~~~l~~ 446 (1300)
+.++...++..+|+|.++++...++++++|+++|++++|++++.+++. .+..++...+.++++++++ +..+.++ ++.
T Consensus 91 ~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~-l~~ 169 (588)
T PRK11174 91 GQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAG-LIL 169 (588)
T ss_pred HHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 999999999999999999999999999999999999999999998764 4445555555444444433 3333333 333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 000755 447 LFATVLIMLTNFPLGRLQENFQDKLMGSKDKRMKVTSEILRNMRILKLQGWEMKFLSKIIE----LRKIEAGWLKKFLYT 522 (1300)
Q Consensus 447 l~~~~l~~~~~~~~~k~~~~~~~~~~~~~d~r~~~~~E~L~~ir~IK~~~~E~~f~~~i~~----~R~~E~~~l~~~~~~ 522 (1300)
++++++.+++..++.++.++..++.++..++..+.+.|.++|+++||.|++|+.+.+++.+ .++.+.+..+.....
T Consensus 170 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (588)
T PRK11174 170 LGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLS 249 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455566788888888899999999999999999999999999999998887744 344443333322222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 523 GAMTSFVFWGAPTFVSVATFGACMLLGIPLESG---------KILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIAS 593 (1300)
Q Consensus 523 ~~~~~~~~~~~p~~v~~~~f~~~~~~~~~Lt~g---------~vft~lal~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~ 593 (1300)
..+..+.. ..+. +.++.++++.+. +.++.| .+++++.+...+..|+..++..+..+.+++++.+||.+
T Consensus 250 ~~~~~~~~-~~~~-~~~~~~~~~~~~-g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ 326 (588)
T PRK11174 250 SAVLEFFA-SISI-ALVAVYFGFSYL-GELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVT 326 (588)
T ss_pred HHHHHHHH-HHHH-HHHHHHHHHHHh-cccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222111 1111 122233333333 344444 34555566677889999999999999999999999999
Q ss_pred HhcCCCCCcccccCCCCCCCcceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCc
Q 000755 594 FLCLDDLQSDVVEKHPRGSSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKIS 673 (1300)
Q Consensus 594 fL~~~e~~~~~~~~~~~~~~~~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~ 673 (1300)
+++.++.++..............|+++|++|.|++ ++++|+|+||+|++|+++||+|+||||||||+++|+|++ |++
T Consensus 327 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~ 403 (588)
T PRK11174 327 FLETPLAHPQQGEKELASNDPVTIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQ 403 (588)
T ss_pred HHcCCCcccCCCccccCCCCCceEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCC
Confidence 99876532211111001112346999999998753 367999999999999999999999999999999999999 999
Q ss_pred cEEEEcC-------------eEEEEecCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhhccCCCcccccCCC
Q 000755 674 GTLKLCG-------------TKAYVAQSPWIQSGNIEDNILFGKP-MDREKYDRVLEACSLKKDLEILSFGDQTVIGERG 739 (1300)
Q Consensus 674 G~i~~~g-------------~~ayv~Q~~~l~~~Ti~eNI~fg~~-~~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g 739 (1300)
|+|.++| .++||||+||+|++||+|||++|+| .++++++++++.|+++++++.+|+|++|.+||+|
T Consensus 404 G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G 483 (588)
T PRK11174 404 GSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQA 483 (588)
T ss_pred cEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCC
Confidence 9999998 4799999999999999999999976 8999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCccccCCEEEEEeCCeEE
Q 000755 740 INLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKIT 819 (1300)
Q Consensus 740 ~~LSGGQkqRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~~d~i~~l~~G~i~ 819 (1300)
.+|||||||||+||||+++||+||||||||||||+++++++.+ .+....+++|+|+||||++.+..||+|++|++|+|+
T Consensus 484 ~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~-~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~ 562 (588)
T PRK11174 484 AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQ-ALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIV 562 (588)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHH-HHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEe
Confidence 9999999999999999999999999999999999999999975 667777899999999999999999999999999999
Q ss_pred EecChHHHHhcCchHHHHHHHHH
Q 000755 820 QAGKYNDILNSGTDFMVLVGAHQ 842 (1300)
Q Consensus 820 ~~g~~~~l~~~~~~~~~l~~~~~ 842 (1300)
+.|+|+|+++.++.|.++...+.
T Consensus 563 e~G~~~eL~~~~~~y~~l~~~q~ 585 (588)
T PRK11174 563 QQGDYAELSQAGGLFATLLAHRQ 585 (588)
T ss_pred ecCCHHHHHhcchHHHHHHHHhh
Confidence 99999999999888888875543
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-73 Score=706.82 Aligned_cols=548 Identities=24% Similarity=0.315 Sum_probs=464.7
Q ss_pred cchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 287 AFKLTKALFFSAWKEIVFTAILALLYTLANYVGPYLIDTFVQYLNGEREFKNEGYVLVSTFFVAKIVECLAQRHWMFRLQ 366 (1300)
Q Consensus 287 ~~~l~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~ 366 (1300)
..+.++..++.+|+.++..++..++..++.++.|++.+.++|.+-.... .....++++++.+..+++.+......+...
T Consensus 141 ~~~~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~-~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~ 219 (709)
T COG2274 141 GLSWFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDAS-RSTLTVLAIGLLLAALFEALLRLLRTYLIA 219 (709)
T ss_pred chHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777788899999999999999999999999999999998865432 233456677777788888888888888889
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCchhhcCCCHHHHHHHHHHHHHHHHHHHHH-hh-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 367 VAGIKMRSVLVSMVYNKGLTLSCQAKQSYTSGEIINFMTVDAERIGDFGWY-MH-DPWLVILQVSLALLILYKNLGLASI 444 (1300)
Q Consensus 367 ~~g~~ir~~L~~~Iy~K~L~ls~~~~~~~~~G~Ivnl~s~Dv~~i~~~~~~-~~-~~~~~~l~i~~~l~lL~~~lg~~~l 444 (1300)
.++.|+...+...+|+|.+++|..+++++++|++++++. |.++|.++... +. .+...++-++...+|+++.+. .++
T Consensus 220 ~~~~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~-L~l 297 (709)
T COG2274 220 HLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWK-LTL 297 (709)
T ss_pred HHHHHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 999999999999999999999999999999999999996 99999998642 22 233344444444445555544 455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 445 AALFATVLIMLTNFPLGRLQENFQDKLMGSKDKRMKVTSEILRNMRILKLQGWEMKFLSKIIELRKIEAGWLKKFLYTGA 524 (1300)
Q Consensus 445 ~~l~~~~l~~~~~~~~~k~~~~~~~~~~~~~d~r~~~~~E~L~~ir~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~~~~ 524 (1300)
++++.+++.+++..++.+..++..++.++...++.+.+.|.++||++||..+.|+.+..++++.-.+..+...+......
T Consensus 298 i~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~ 377 (709)
T COG2274 298 IVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLAL 377 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 66667777777778888888999999999999999999999999999999999999999998765555544333333322
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q 000755 525 MTSFVFWG--APTFVSVATFGACMLLGIPLESGKILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIASFLCLDDLQS 602 (1300)
Q Consensus 525 ~~~~~~~~--~p~~v~~~~f~~~~~~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~ 602 (1300)
........ .-.-+.+++||++.++.+.+|.|.++++.++.+.+..|+.++.+.+..+++++++.+|+.++++.|.+++
T Consensus 378 ~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~ 457 (709)
T COG2274 378 ILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQE 457 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 22222111 2223566889999999999999999999999999999999999999999999999999999998876543
Q ss_pred ccccCCCCCCCcceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC--
Q 000755 603 DVVEKHPRGSSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-- 680 (1300)
Q Consensus 603 ~~~~~~~~~~~~~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g-- 680 (1300)
............+.|+++|++|+|+++ ++++|+|+||+|++||++||+|+||||||||+|+|+|.|+|++|+|.+||
T Consensus 458 ~~~~~~~~~~~~g~I~~~nvsf~y~~~-~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~d 536 (709)
T COG2274 458 GDKTLIHLPKLQGEIEFENVSFRYGPD-DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVD 536 (709)
T ss_pred cccccccccccCceEEEEEEEEEeCCC-CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEe
Confidence 322112223456789999999999854 34899999999999999999999999999999999999999999999999
Q ss_pred -----------eEEEEecCCcCCCCCHHHHHhcCCCC-CHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHH
Q 000755 681 -----------TKAYVAQSPWIQSGNIEDNILFGKPM-DREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQ 748 (1300)
Q Consensus 681 -----------~~ayv~Q~~~l~~~Ti~eNI~fg~~~-~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkq 748 (1300)
.++||+|++.+|+|||+|||.+|.|. +.|+..++++.++.++++..+|.|++|.+||+|.||||||||
T Consensus 537 l~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQ 616 (709)
T COG2274 537 LNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQ 616 (709)
T ss_pred HHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHH
Confidence 36999999999999999999999995 568999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHH
Q 000755 749 RIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDIL 828 (1300)
Q Consensus 749 RiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~ 828 (1300)
||+||||++++|+|+||||||||||+++++.+.++ +.....++|+|+||||++.+..||+|+||++|+|+++|+++|++
T Consensus 617 rlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~-L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell 695 (709)
T COG2274 617 RLALARALLSKPKILLLDEATSALDPETEAIILQN-LLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELL 695 (709)
T ss_pred HHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHH-HHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHH
Confidence 99999999999999999999999999999999765 56677889999999999999999999999999999999999999
Q ss_pred hcCchHHHHHH
Q 000755 829 NSGTDFMVLVG 839 (1300)
Q Consensus 829 ~~~~~~~~l~~ 839 (1300)
+.++.|..+..
T Consensus 696 ~~~g~y~~l~~ 706 (709)
T COG2274 696 AQGGLYARLYQ 706 (709)
T ss_pred HhcChHHHHHh
Confidence 99888887764
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-71 Score=703.77 Aligned_cols=542 Identities=22% Similarity=0.260 Sum_probs=440.7
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 289 KLTKALFFSAWKEIVFTAILALLYTLANYVGPYLIDTFVQYLNGEREFKNEGYVLVSTFFVAKIVECLAQRHWMFRLQVA 368 (1300)
Q Consensus 289 ~l~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~ 368 (1300)
.+++..++.+++.++...++.++..++.++.|++++.++|.+..... ....+.+++++++..++..++.....+...++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (686)
T TIGR03797 125 DLLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDAD-RSLLVQIALALLAAAVGAAAFQLAQSLAVLRL 203 (686)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555567788888889999999999999999999999998753322 12233445555555666677777777788899
Q ss_pred HHHHHHHHHHHHHHHHhcCCchhhcCCCHHHHHHHHHHHHHHHHHHHHH-hhH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 369 GIKMRSVLVSMVYNKGLTLSCQAKQSYTSGEIINFMTVDAERIGDFGWY-MHD-PWLVILQVSLALLILYKNLGLASIAA 446 (1300)
Q Consensus 369 g~~ir~~L~~~Iy~K~L~ls~~~~~~~~~G~Ivnl~s~Dv~~i~~~~~~-~~~-~~~~~l~i~~~l~lL~~~lg~~~l~~ 446 (1300)
+.++...++..+|+|.++++...++++++|+++++++ |++.+.+++.. +.. +...++.++..+++++.. ++.+++.
T Consensus 204 ~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~l~li~ 281 (686)
T TIGR03797 204 ETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYS-WKLALVA 281 (686)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 9999999999999999999999999999999999997 89999887543 222 223333333333333333 3344455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 447 LFATVLIMLTNFPLGRLQENFQDKLMGSKDKRMKVTSEILRNMRILKLQGWEMKFLSKIIELRKIEAGWLKKFLYTGAMT 526 (1300)
Q Consensus 447 l~~~~l~~~~~~~~~k~~~~~~~~~~~~~d~r~~~~~E~L~~ir~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~~~~~~ 526 (1300)
++++++.+++...+.+..++..++.++..+++.+.+.|.++|+++||.++.|+.+.+++++..+...+...+........
T Consensus 282 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (686)
T TIGR03797 282 VALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLL 361 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555556667778888888889999999999999999999999999999999998888775444333333322222222
Q ss_pred HHHHHHH--HHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc
Q 000755 527 SFVFWGA--PTFVSVATFGACMLLGIPLESGKILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIASFLCLDDLQSDV 604 (1300)
Q Consensus 527 ~~~~~~~--p~~v~~~~f~~~~~~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~ 604 (1300)
..+.... -..+.++.++++.+.++.+|.|.++++.+++..+..|+..++..+..+.+++++++|+.++++.++..+..
T Consensus 362 ~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~ 441 (686)
T TIGR03797 362 TVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEA 441 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccC
Confidence 2221111 12234456677888889999999999999999999999999999999999999999999999765432211
Q ss_pred ccCCCCCCCcceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC----
Q 000755 605 VEKHPRGSSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG---- 680 (1300)
Q Consensus 605 ~~~~~~~~~~~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g---- 680 (1300)
. .........|+++|++|+|+++ ++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|
T Consensus 442 ~--~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~ 518 (686)
T TIGR03797 442 K--TDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLA 518 (686)
T ss_pred c--CCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcC
Confidence 1 1111223579999999999743 46899999999999999999999999999999999999999999999998
Q ss_pred ---------eEEEEecCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHH
Q 000755 681 ---------TKAYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQ 751 (1300)
Q Consensus 681 ---------~~ayv~Q~~~l~~~Ti~eNI~fg~~~~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRia 751 (1300)
.++||+|+|++|++||+|||.+|+|.++++++++++.|+++++++.+|+|++|.+||+|.+|||||||||+
T Consensus 519 ~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRia 598 (686)
T TIGR03797 519 GLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLL 598 (686)
T ss_pred cCCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHH
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHhcC
Q 000755 752 IARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSG 831 (1300)
Q Consensus 752 LARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 831 (1300)
||||++++|+|++||||||+||+++++++.+. +... ++|+|+||||++.++.||+|++|++|+|++.|+|+|+++.+
T Consensus 599 lARAll~~p~iLiLDEpTS~LD~~te~~i~~~-L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~~ 675 (686)
T TIGR03797 599 IARALVRKPRILLFDEATSALDNRTQAIVSES-LERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMARE 675 (686)
T ss_pred HHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH-HHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhCC
Confidence 99999999999999999999999999999765 4443 68999999999999999999999999999999999999988
Q ss_pred chHHHHHH
Q 000755 832 TDFMVLVG 839 (1300)
Q Consensus 832 ~~~~~l~~ 839 (1300)
+.|..+..
T Consensus 676 ~~y~~l~~ 683 (686)
T TIGR03797 676 GLFAQLAR 683 (686)
T ss_pred cHHHHHHH
Confidence 88887764
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-71 Score=707.33 Aligned_cols=544 Identities=19% Similarity=0.238 Sum_probs=446.3
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 289 KLTKALFFSAWKEIVFTAILALLYTLANYVGPYLIDTFVQYLNGEREFKNEGYVLVSTFFVAKIVECLAQRHWMFRLQVA 368 (1300)
Q Consensus 289 ~l~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~ 368 (1300)
+.++..++.+++.++..+++.++..++.++.|++++.++|.+..... ....+.+++++++..++..++.....+...++
T Consensus 143 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (710)
T TIGR03796 143 RALWRRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGR-QDWLRPLLLGMGLTALLQGVLTWLQLYYLRRL 221 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677788888888899999999999999999999997654322 12233444555555666777777777888899
Q ss_pred HHHHHHHHHHHHHHHHhcCCchhhcCCCHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 369 GIKMRSVLVSMVYNKGLTLSCQAKQSYTSGEIINFMTVDAERIGDFGW-YMHDPWLVILQVSLALLILYKNLGLASIAAL 447 (1300)
Q Consensus 369 g~~ir~~L~~~Iy~K~L~ls~~~~~~~~~G~Ivnl~s~Dv~~i~~~~~-~~~~~~~~~l~i~~~l~lL~~~lg~~~l~~l 447 (1300)
+.++...++..+|+|.++++...+.++++|+++++++.| +.+.+++. .+.......+.+++.+++++..-++.+++.+
T Consensus 222 ~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l 300 (710)
T TIGR03796 222 QIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGI 300 (710)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988 67887654 3344444444444444444443334445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 448 FATVLIMLTNFPLGRLQENFQDKLMGSKDKRMKVTSEILRNMRILKLQGWEMKFLSKIIELRKIEAGWLKKFLYTGAMTS 527 (1300)
Q Consensus 448 ~~~~l~~~~~~~~~k~~~~~~~~~~~~~d~r~~~~~E~L~~ir~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~~~~~~~ 527 (1300)
+.+++.+.+..++.+...+..++.++..+++.+.+.|.++|+++||.+++|+.+.+++.+....+.+...+.........
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (710)
T TIGR03796 301 AFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILG 380 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666777788888888888999999999999999999999999999999999998876666655444333322222
Q ss_pred HHHHHH--HHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc
Q 000755 528 FVFWGA--PTFVSVATFGACMLLGIPLESGKILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIASFLCLDDLQSDVV 605 (1300)
Q Consensus 528 ~~~~~~--p~~v~~~~f~~~~~~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~ 605 (1300)
...... ...+.+++++++.+.++.+|.|.++++..++..+..|+..++..+..+.+++++++|+.++++.++..+...
T Consensus 381 ~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~ 460 (710)
T TIGR03796 381 VLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEE 460 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Confidence 211111 123345677888888999999999999999999999999999999999999999999999998764432211
Q ss_pred ----c--CCCCCCCcceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEc
Q 000755 606 ----E--KHPRGSSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLC 679 (1300)
Q Consensus 606 ----~--~~~~~~~~~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~ 679 (1300)
. ..+.......|+++|++|+|+.+ ++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++
T Consensus 461 ~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~id 539 (710)
T TIGR03796 461 EEAPAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFD 539 (710)
T ss_pred ccccccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEC
Confidence 0 01101224579999999999743 4689999999999999999999999999999999999999999999999
Q ss_pred C-------------eEEEEecCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHH
Q 000755 680 G-------------TKAYVAQSPWIQSGNIEDNILFGKP-MDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGG 745 (1300)
Q Consensus 680 g-------------~~ayv~Q~~~l~~~Ti~eNI~fg~~-~~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGG 745 (1300)
| .++||||+|++|++||+|||.++.+ .++++++++++.++++++++.+|+|++|.+||+|.+||||
T Consensus 540 g~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGG 619 (710)
T TIGR03796 540 GIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGG 619 (710)
T ss_pred CEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHH
Confidence 8 3699999999999999999999875 7899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChH
Q 000755 746 QKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYN 825 (1300)
Q Consensus 746 QkqRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~~d~i~~l~~G~i~~~g~~~ 825 (1300)
|||||+||||++++|+|+||||||||||+++++++++.+.. .++|+|+||||++.+..||+|++|++|+|++.|+|+
T Consensus 620 QrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~ 696 (710)
T TIGR03796 620 QRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHE 696 (710)
T ss_pred HHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHH
Confidence 99999999999999999999999999999999999876533 589999999999999999999999999999999999
Q ss_pred HHHhcCchHHHHH
Q 000755 826 DILNSGTDFMVLV 838 (1300)
Q Consensus 826 ~l~~~~~~~~~l~ 838 (1300)
|+++.++.|.+++
T Consensus 697 ~Ll~~~~~y~~l~ 709 (710)
T TIGR03796 697 ELWAVGGAYARLI 709 (710)
T ss_pred HHHHcCCcHHHHh
Confidence 9998888887654
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-70 Score=697.99 Aligned_cols=537 Identities=24% Similarity=0.314 Sum_probs=439.3
Q ss_pred chhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 288 FKLTKALFFSAWKEIVFTAILALLYTLANYVGPYLIDTFVQYLNGEREFKNEGYVLVSTFFVAKIVECLAQRHWMFRLQV 367 (1300)
Q Consensus 288 ~~l~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~ 367 (1300)
.+.++..++.+++.+....++.++..++.++.|++++.++|.+..... ....+.+++++++..++..+......+...+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (694)
T TIGR03375 135 KHWFWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQA-FETLWVLAIGVALAIVFDFVLKTLRSYFLDV 213 (694)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677888889989999999999999999999999998653322 1222334444444555666777667777888
Q ss_pred HHHHHHHHHHHHHHHHHhcCCchhhcCCCHHHHHHHHHHHHHHHHHHHHH-hh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 368 AGIKMRSVLVSMVYNKGLTLSCQAKQSYTSGEIINFMTVDAERIGDFGWY-MH-DPWLVILQVSLALLILYKNLGLASIA 445 (1300)
Q Consensus 368 ~g~~ir~~L~~~Iy~K~L~ls~~~~~~~~~G~Ivnl~s~Dv~~i~~~~~~-~~-~~~~~~l~i~~~l~lL~~~lg~~~l~ 445 (1300)
++.++...++..+|+|.++++... .+.++|++++++ +|++.+.+++.. +. .+...++.++..+++++.. ++.+++
T Consensus 214 ~~~~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~l~li 290 (694)
T TIGR03375 214 AGKKADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIG-GPLVWV 290 (694)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-hHHHHH
Confidence 999999999999999999999887 678999999999 799999987543 22 2333333333333444433 334455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 446 ALFATVLIMLTNFPLGRLQENFQDKLMGSKDKRMKVTSEILRNMRILKLQGWEMKFLSKIIELRKIEAGWLKKFLYTGAM 525 (1300)
Q Consensus 446 ~l~~~~l~~~~~~~~~k~~~~~~~~~~~~~d~r~~~~~E~L~~ir~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~~~~~ 525 (1300)
.++++++.+++..++.++.++..++.++..+++.+.+.|.++|+++||.+++|+.+.+++.+..+...+...+.......
T Consensus 291 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (694)
T TIGR03375 291 PLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNL 370 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666667777888889999999999999999999999999999999999999999987766555544444333332
Q ss_pred HHHHHHHHH--HHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Q 000755 526 TSFVFWGAP--TFVSVATFGACMLLGIPLESGKILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIASFLCLDDLQSD 603 (1300)
Q Consensus 526 ~~~~~~~~p--~~v~~~~f~~~~~~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~ 603 (1300)
......... ..+.+++++++.+.++.+|.|.+++++.++..+..|+..++..+..+.+++++++|+.++++.++..+.
T Consensus 371 ~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~ 450 (694)
T TIGR03375 371 ATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPE 450 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 222222211 223456678888889999999999999999999999999999999999999999999999987654322
Q ss_pred cccCCCCCCCcceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC---
Q 000755 604 VVEKHPRGSSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--- 680 (1300)
Q Consensus 604 ~~~~~~~~~~~~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g--- 680 (1300)
.....+.......|+++|++|+|+. .++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|
T Consensus 451 ~~~~~~~~~~~~~I~~~~vsf~Y~~-~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l 529 (694)
T TIGR03375 451 GTRFLHRPRLQGEIEFRNVSFAYPG-QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDI 529 (694)
T ss_pred CCCCCCCCCccceEEEEEEEEEeCC-CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEh
Confidence 1111111122357999999999973 346899999999999999999999999999999999999999999999998
Q ss_pred ----------eEEEEecCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHH
Q 000755 681 ----------TKAYVAQSPWIQSGNIEDNILFGKP-MDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQR 749 (1300)
Q Consensus 681 ----------~~ayv~Q~~~l~~~Ti~eNI~fg~~-~~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqR 749 (1300)
.++||+|+|++|++||+|||.++++ .+++++.++++.|+++++++.+|+|++|.+||+|.+||||||||
T Consensus 530 ~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQR 609 (694)
T TIGR03375 530 RQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQA 609 (694)
T ss_pred hhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHH
Confidence 4699999999999999999999987 79999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHh
Q 000755 750 IQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILN 829 (1300)
Q Consensus 750 iaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 829 (1300)
|+||||++++|+|++||||||+||+++++.+.+ .+....+++|+|+||||++.+..||+|++|++|+|++.|+|+|+++
T Consensus 610 lalARall~~p~iliLDE~Ts~LD~~te~~i~~-~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~ 688 (694)
T TIGR03375 610 VALARALLRDPPILLLDEPTSAMDNRSEERFKD-RLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLE 688 (694)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence 999999999999999999999999999999865 5666678999999999999999999999999999999999999975
Q ss_pred c
Q 000755 830 S 830 (1300)
Q Consensus 830 ~ 830 (1300)
.
T Consensus 689 ~ 689 (694)
T TIGR03375 689 A 689 (694)
T ss_pred H
Confidence 4
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-70 Score=695.47 Aligned_cols=540 Identities=21% Similarity=0.236 Sum_probs=424.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 293 ALFFSAWKEIVFTAILALLYTLANYVGPYLIDTFVQYLNGEREFKNEGYVLVSTFFVAKIVECLAQRHWMFRLQVAGIKM 372 (1300)
Q Consensus 293 ~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~g~~i 372 (1300)
.+++.+|+.++..+++.++..++..+.|++++.++|.+......... ...+..+++..++..++.....+.....+.++
T Consensus 154 ~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 232 (711)
T TIGR00958 154 GLSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPAL-ASAIFFMCLLSIASSVSAGLRGGSFNYTMARI 232 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777888888999999999999999999999988643221111 11111222222333343333344455667777
Q ss_pred HHHHHHHHHHHHhcCCchhhcCCCHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 373 RSVLVSMVYNKGLTLSCQAKQSYTSGEIINFMTVDAERIGDFGW-YMHDPWLVILQVSLALLILYKNLGLASIAALFATV 451 (1300)
Q Consensus 373 r~~L~~~Iy~K~L~ls~~~~~~~~~G~Ivnl~s~Dv~~i~~~~~-~~~~~~~~~l~i~~~l~lL~~~lg~~~l~~l~~~~ 451 (1300)
...++..+|++.++.+...+++.++|+++|++++|++.+.+++. .+..++...+.+++++++++..-+..+++.++.++
T Consensus 233 ~~~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l~~~~ 312 (711)
T TIGR00958 233 NLRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLP 312 (711)
T ss_pred HHHHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 78888899999999999999999999999999999999998654 34555555555555554443322233334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 000755 452 LIMLTNFPLGRLQENFQDKLMGSKDKRMKVTSEILRNMRILKLQGWEMKFLSKIIELRKIEAGWLKKFLYTGAMTSFVF- 530 (1300)
Q Consensus 452 l~~~~~~~~~k~~~~~~~~~~~~~d~r~~~~~E~L~~ir~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~- 530 (1300)
+...+...+.+..++..++.++..++..+...|.++|+++||.|++|+.+.+++.+..++-.+...+............
T Consensus 313 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (711)
T TIGR00958 313 LVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTS 392 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666778888888888888999999999999999999999999999887776554332222222111111111111
Q ss_pred -HHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCC
Q 000755 531 -WGAPTFVSVATFGACMLLGIPLESGKILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIASFLCLDDLQSDVVEKHP 609 (1300)
Q Consensus 531 -~~~p~~v~~~~f~~~~~~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~~~ 609 (1300)
......+.++.++.+.+..+.++.|.+++++.+...+..|+..++..+..+.+++++.+||.++++.++..+......+
T Consensus 393 ~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~ 472 (711)
T TIGR00958 393 VLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGTLAP 472 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 1111233445677788888999999999999999999999999999999999999999999999976543322111111
Q ss_pred CCCCcceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC---------
Q 000755 610 RGSSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--------- 680 (1300)
Q Consensus 610 ~~~~~~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g--------- 680 (1300)
......|+++|++|+|+..+++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|
T Consensus 473 -~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~ 551 (711)
T TIGR00958 473 -LNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHH 551 (711)
T ss_pred -CCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHH
Confidence 1223579999999999854456899999999999999999999999999999999999999999999998
Q ss_pred ----eEEEEecCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHHHH
Q 000755 681 ----TKAYVAQSPWIQSGNIEDNILFGKP-MDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARA 755 (1300)
Q Consensus 681 ----~~ayv~Q~~~l~~~Ti~eNI~fg~~-~~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLARA 755 (1300)
.++||+|+|++|++||||||.+|.+ .+++++.++++.++++++++.+|+|++|.+||+|.+|||||||||+||||
T Consensus 552 ~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARA 631 (711)
T TIGR00958 552 YLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARA 631 (711)
T ss_pred HHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHH
Confidence 4699999999999999999999976 67899999999999999999999999999999999999999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHhcCchHH
Q 000755 756 LYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSGTDFM 835 (1300)
Q Consensus 756 ly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 835 (1300)
++++|+|+|||||||+||+++++.+.+ ....+++|+|+||||++.+..||+|++|++|+|++.|+|+|+++.++.|.
T Consensus 632 Ll~~p~ILILDEpTSaLD~~te~~i~~---~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~~~~y~ 708 (711)
T TIGR00958 632 LVRKPRVLILDEATSALDAECEQLLQE---SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGCYK 708 (711)
T ss_pred HhcCCCEEEEEccccccCHHHHHHHHH---hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhCCCchH
Confidence 999999999999999999999998876 22347899999999999999999999999999999999999998877776
Q ss_pred HH
Q 000755 836 VL 837 (1300)
Q Consensus 836 ~l 837 (1300)
++
T Consensus 709 ~l 710 (711)
T TIGR00958 709 HL 710 (711)
T ss_pred hc
Confidence 54
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-69 Score=689.94 Aligned_cols=539 Identities=23% Similarity=0.304 Sum_probs=434.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 291 TKALFFSAWKEIVFTAILALLYTLANYVGPYLIDTFVQYLNGEREFKNEGYVLVSTFFVAKIVECLAQRHWMFRLQVAGI 370 (1300)
Q Consensus 291 ~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~g~ 370 (1300)
++..++.+++.++...++.++..++.++.|++++.++|.+..... ....+.+++++++..++..++.....+...+++.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (708)
T TIGR01193 147 FIPLITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKM-MGTLGIISIGLIIAYIIQQILSYIQIFLLNVLGQ 225 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444567788888888888999999999999999999997654322 1122333344444555566666666677888999
Q ss_pred HHHHHHHHHHHHHHhcCCchhhcCCCHHHHHHHHHHHHHHHHHHHHHh-hHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 371 KMRSVLVSMVYNKGLTLSCQAKQSYTSGEIINFMTVDAERIGDFGWYM-HDPW-LVILQVSLALLILYKNLGLASIAALF 448 (1300)
Q Consensus 371 ~ir~~L~~~Iy~K~L~ls~~~~~~~~~G~Ivnl~s~Dv~~i~~~~~~~-~~~~-~~~l~i~~~l~lL~~~lg~~~l~~l~ 448 (1300)
++...++..+|+|.++++...+++.++|+++++++ |++.+.+++... .... ..++.++..+++++..+.++ ++.++
T Consensus 226 ~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~-li~l~ 303 (708)
T TIGR01193 226 RLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLF-LLSLL 303 (708)
T ss_pred HHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHH
Confidence 99999999999999999999999999999999998 999998875432 2222 33333333334444444433 34444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHH----HH
Q 000755 449 ATVLIMLTNFPLGRLQENFQDKLMGSKDKRMKVTSEILRNMRILKLQGWEMKFLSKIIELRKIEAGWLKKFLYT----GA 524 (1300)
Q Consensus 449 ~~~l~~~~~~~~~k~~~~~~~~~~~~~d~r~~~~~E~L~~ir~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~~----~~ 524 (1300)
++++..++...+.+..++..++.++..+++.+.+.|.++|+++||.+++|+.+.+++++..+...+...+.... ..
T Consensus 304 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (708)
T TIGR01193 304 SIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQA 383 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556667788888889999999999999999999999999999999999888866544333322222111 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc
Q 000755 525 MTSFVFWGAPTFVSVATFGACMLLGIPLESGKILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIASFLCLDDLQSDV 604 (1300)
Q Consensus 525 ~~~~~~~~~p~~v~~~~f~~~~~~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~ 604 (1300)
+..++.. ...+.++++|++.+..+.+|.|.++++..++..+..|+..+...+..+.+++++++|+.++++.++..+..
T Consensus 384 ~~~~~~~--~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~ 461 (708)
T TIGR01193 384 IKAVTKL--ILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINK 461 (708)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccc
Confidence 2221111 12344567888888999999999999999999999999999999999999999999999999766443221
Q ss_pred ccCCCCCCCcceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC----
Q 000755 605 VEKHPRGSSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG---- 680 (1300)
Q Consensus 605 ~~~~~~~~~~~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g---- 680 (1300)
....+.....+.|+++|++|+|+. ++++|+|+||+|++|+++||+|+||||||||+++|+|+++|++|+|.++|
T Consensus 462 ~~~~~~~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~ 539 (708)
T TIGR01193 462 KKRTELNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLK 539 (708)
T ss_pred ccccCCCCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHH
Confidence 111111223457999999999963 36899999999999999999999999999999999999999999999998
Q ss_pred ---------eEEEEecCCcCCCCCHHHHHhcCC-C-CCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHH
Q 000755 681 ---------TKAYVAQSPWIQSGNIEDNILFGK-P-MDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQR 749 (1300)
Q Consensus 681 ---------~~ayv~Q~~~l~~~Ti~eNI~fg~-~-~~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqR 749 (1300)
.++||||+|++|++||+|||.+|. + .+++++.++++.++++++++.+|.|++|.+||+|.+||||||||
T Consensus 540 ~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQR 619 (708)
T TIGR01193 540 DIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQR 619 (708)
T ss_pred HcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHH
Confidence 369999999999999999999983 3 78899999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHh
Q 000755 750 IQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILN 829 (1300)
Q Consensus 750 iaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 829 (1300)
|+||||++++|+|+|||||||+||+++++++.+.+ .. ++++|+|+||||++.+..||+|++|++|++++.|+|+|+++
T Consensus 620 ialARall~~p~iliLDE~Ts~LD~~te~~i~~~L-~~-~~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 620 IALARALLTDSKVLILDESTSNLDTITEKKIVNNL-LN-LQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred HHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHH-HH-hcCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999987654 44 37899999999999999999999999999999999999998
Q ss_pred cCchHHHHH
Q 000755 830 SGTDFMVLV 838 (1300)
Q Consensus 830 ~~~~~~~l~ 838 (1300)
.++.|.+++
T Consensus 698 ~~~~y~~l~ 706 (708)
T TIGR01193 698 RNGFYASLI 706 (708)
T ss_pred cCCcHHHHh
Confidence 888887765
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-68 Score=670.10 Aligned_cols=545 Identities=17% Similarity=0.212 Sum_probs=433.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 291 TKALFFSAWKEIVFTAILALLYTLANYVGPYLIDTFVQYLNGEREFKNEGYVLVSTFFVAKIVECLAQRHWMFRLQVAGI 370 (1300)
Q Consensus 291 ~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~g~ 370 (1300)
++.+++.+++.++..+++.++..++..+.|++++.+++.+.+.... .....+++++++..++..+......+...+++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 94 (582)
T PRK11176 16 LWPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKADR-SVLKWMPLVVIGLMILRGITSFISSYCISWVSG 94 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777787777888888888888999999999876543221 111222222333444455555555566778888
Q ss_pred HHHHHHHHHHHHHHhcCCchhhcCCCHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 371 KMRSVLVSMVYNKGLTLSCQAKQSYTSGEIINFMTVDAERIGDFGW-YMHDPWLVILQVSLALLILYKNLGLASIAALFA 449 (1300)
Q Consensus 371 ~ir~~L~~~Iy~K~L~ls~~~~~~~~~G~Ivnl~s~Dv~~i~~~~~-~~~~~~~~~l~i~~~l~lL~~~lg~~~l~~l~~ 449 (1300)
++...++..+|+|.++++...+.+.+.|++++++++|++.+.++.. .+..++..++.+++.+++++..-++.+++.+++
T Consensus 95 ~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~ 174 (582)
T PRK11176 95 KVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIVI 174 (582)
T ss_pred HHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998643 344455555555555554443333333344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 450 TVLIMLTNFPLGRLQENFQDKLMGSKDKRMKVTSEILRNMRILKLQGWEMKFLSKIIELRKIEAGWLKKFLYTGAMTSFV 529 (1300)
Q Consensus 450 ~~l~~~~~~~~~k~~~~~~~~~~~~~d~r~~~~~E~L~~ir~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~ 529 (1300)
+++.+++...+.++.++..++.++..++..+...|.++|+++||.+++|+.+.+++++.-+.-.+...+...........
T Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (582)
T PRK11176 175 APIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPI 254 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556677888888888899999999999999999999999999999988888665333322222222211111111
Q ss_pred HH--HHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccC
Q 000755 530 FW--GAPTFVSVATFGACMLLGIPLESGKILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIASFLCLDDLQSDVVEK 607 (1300)
Q Consensus 530 ~~--~~p~~v~~~~f~~~~~~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~ 607 (1300)
.. ..-..+.++.++.+.+..+.+++|.+.++..++..+..|+..+...+..+.+++.+++|+.++++.++..+.....
T Consensus 255 ~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~ 334 (582)
T PRK11176 255 IQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEGKRV 334 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCcC
Confidence 11 1112334456667777888999999999999999999999999999999999999999999999766442211111
Q ss_pred CCCCCCcceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe------
Q 000755 608 HPRGSSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------ 681 (1300)
Q Consensus 608 ~~~~~~~~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~------ 681 (1300)
.......|+++|++|+|++ .++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 335 --~~~~~~~i~~~~vsf~y~~-~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~ 411 (582)
T PRK11176 335 --IERAKGDIEFRNVTFTYPG-KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYT 411 (582)
T ss_pred --CCCCCCeEEEEEEEEecCC-CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcC
Confidence 1112346999999999974 3468999999999999999999999999999999999999999999999984
Q ss_pred -------EEEEecCCcCCCCCHHHHHhcCCC--CCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHH
Q 000755 682 -------KAYVAQSPWIQSGNIEDNILFGKP--MDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQI 752 (1300)
Q Consensus 682 -------~ayv~Q~~~l~~~Ti~eNI~fg~~--~~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaL 752 (1300)
++||||+|++|++||+|||.+|++ +++++++++++.++++++++.+|+|++|.+||+|.+|||||||||+|
T Consensus 412 ~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~L 491 (582)
T PRK11176 412 LASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAI 491 (582)
T ss_pred HHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHH
Confidence 599999999999999999999864 78999999999999999999999999999999999999999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHhcCc
Q 000755 753 ARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSGT 832 (1300)
Q Consensus 753 ARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 832 (1300)
|||+|++|+|++|||||||||+++++.+++. +....+++|+|+||||++.++.||+|++|++|+|++.|+|+++++.++
T Consensus 492 ARall~~~~ililDEptsaLD~~t~~~i~~~-l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~~~ 570 (582)
T PRK11176 492 ARALLRDSPILILDEATSALDTESERAIQAA-LDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQNG 570 (582)
T ss_pred HHHHHhCCCEEEEECccccCCHHHHHHHHHH-HHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhCCC
Confidence 9999999999999999999999999998754 555567899999999999999999999999999999999999999988
Q ss_pred hHHHHHHH
Q 000755 833 DFMVLVGA 840 (1300)
Q Consensus 833 ~~~~l~~~ 840 (1300)
.|.++...
T Consensus 571 ~y~~l~~~ 578 (582)
T PRK11176 571 VYAQLHKM 578 (582)
T ss_pred hHHHHHHH
Confidence 88887653
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-71 Score=651.35 Aligned_cols=466 Identities=27% Similarity=0.388 Sum_probs=363.4
Q ss_pred eEEEEeEEEEecCCCC-CCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCC----ccEEEEcCe---------
Q 000755 616 AIEIVDGNFAWDISSN-NPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKI----SGTLKLCGT--------- 681 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~~~-~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~----~G~i~~~g~--------- 681 (1300)
-++++|++..|..... .++++||||+|.+||.+||||+|||||||++++|+|.+++. +|+|.++|+
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 5899999999975532 25999999999999999999999999999999999999987 899988873
Q ss_pred --------EEEEecCCcC-CC--CCHHHHHh----cCCCC----CHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCC
Q 000755 682 --------KAYVAQSPWI-QS--GNIEDNIL----FGKPM----DREKYDRVLEACSLKKDLEILSFGDQTVIGERGINL 742 (1300)
Q Consensus 682 --------~ayv~Q~~~l-~~--~Ti~eNI~----fg~~~----~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~L 742 (1300)
+||++|+|+- +| .||.+-|. ..... ..++..+.++..++.+.... +.-...|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---------~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---------DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---------ccCCccc
Confidence 6999999963 44 46666554 23222 12334445555665443322 3345789
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEecCCCcccc-CCEEEEEeCCeEE
Q 000755 743 SGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL--RSKTVIYVTHQVEFLPA-ADLILVMKDGKIT 819 (1300)
Q Consensus 743 SGGQkqRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l--~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~ 819 (1300)
|||||||+.||+||..+|+++|+||||+|||+.+.++|.+ +++.+. .|.++|+|||+++.+.. ||+|+||.+|+++
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~-llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iV 234 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILD-LLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIV 234 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHH-HHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEE
Confidence 9999999999999999999999999999999999999986 455443 47899999999999876 9999999999999
Q ss_pred EecChHHHHhcCchHHHHHHHHHHHhhhhcccCCCCccccccccccCCCccccccccccCccccccccchhhhhhhHHHH
Q 000755 820 QAGKYNDILNSGTDFMVLVGAHQQALSALDSIEGGPVSERISMNKENGGMDTTNGVTMKEGNEDIQTDKVDEQYYIPSAR 899 (1300)
Q Consensus 820 ~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~~lp~grnr~s~D~v~~~~y~~~~r 899 (1300)
+.|+.++++++...- |-+.
T Consensus 235 E~G~~~~i~~~p~hp-----------------------------------------------------------YT~~-- 253 (539)
T COG1123 235 ETGPTEEILSNPQHP-----------------------------------------------------------YTRG-- 253 (539)
T ss_pred EecCHHHHHhccCCc-----------------------------------------------------------ccHH--
Confidence 999999998653210 0000
Q ss_pred HHHHHHhhhhhhHHHHHHHHhhchHHHHHhcchHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 900 ELSRLVGVCKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFHIAGAMEWLCFRLDMLSSLTFAFSLVLL 979 (1300)
Q Consensus 900 ~l~rl~~~~~sp~~~~~~E~l~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~ 979 (1300)
+ +
T Consensus 254 -L-----------------------------------------------------------------------------l 255 (539)
T COG1123 254 -L-----------------------------------------------------------------------------L 255 (539)
T ss_pred -H-----------------------------------------------------------------------------H
Confidence 0 0
Q ss_pred HHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccCCCCCCCCCCceEEEEe
Q 000755 980 ISIPKGVIEPAIAGLAVTYGLNLNMLQAWVIWNLCNLENKIISVERILQYTCISSEPPLVIEESRPDCSWPTHGEVDILN 1059 (1300)
Q Consensus 980 ~~~~~g~~~~~~~gl~l~~~~~~~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~i~~~~ 1059 (1300)
. + .|...............-+....++++|
T Consensus 256 ~-----------------------------------------a---------~p~~~~~~~~~~~~~~~~~~~~ll~V~~ 285 (539)
T COG1123 256 A-----------------------------------------A---------VPRLGDEKIIRLPRRGPLRAEPLLSVRN 285 (539)
T ss_pred h-----------------------------------------h---------CCCcccccccccccccccccCceeEeee
Confidence 0 0 0000000000000000001344689999
Q ss_pred eeeeeCC---------CCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCee--cCCCCHHHH
Q 000755 1060 LQVRYAP---------HLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGIN--ISSIGLHDL 1128 (1300)
Q Consensus 1060 v~~~y~~---------~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~d--i~~i~~~~l 1128 (1300)
++++|.. +...+++||||++++||++||||.||||||||.++|+|+++|++|+|.++|.| .+.-....+
T Consensus 286 l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~ 365 (539)
T COG1123 286 LSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRL 365 (539)
T ss_pred eeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhh
Confidence 9999974 12468999999999999999999999999999999999999999999999987 222224457
Q ss_pred hcccEEEcCCCCC--C-cccHHHhcC-CCC---C----CCHHHHHHHHHHcCCcH-HHHhhcCCCccccccCCCCCChhH
Q 000755 1129 RSRLSIIPQDPTM--F-EGTVRNNLD-PLE---E----YKDEEIWEALDKCQLGD-EVRNKEGKLDSRVTENGENWSMGQ 1196 (1300)
Q Consensus 1129 r~~i~~vpQ~~~l--f-~gTvr~Nl~-~~~---~----~~d~~i~~~l~~~~l~~-~i~~~~~gLdt~v~e~G~~LSgGq 1196 (1300)
|+++-+|+|||+- - ..||++++. |.. . ...+.+.+.|++++|.+ +..+.| ..|||||
T Consensus 366 r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP-----------~elSGGQ 434 (539)
T COG1123 366 RRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYP-----------HELSGGQ 434 (539)
T ss_pred hhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCc-----------hhcCcch
Confidence 7899999999963 2 359999984 221 1 12234777899999975 344444 5679999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecCh
Q 000755 1197 RQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSP 1273 (1300)
Q Consensus 1197 rQrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~ 1273 (1300)
|||+||||||..+|++||+|||||+||+.+.+.|.+.|.+..+ +.|.|+||||+..+.. ||||+||++|+|+|.|+.
T Consensus 435 rQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~ 514 (539)
T COG1123 435 RQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPT 514 (539)
T ss_pred hHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCH
Confidence 9999999999999999999999999999999999999988653 6899999999999998 999999999999999999
Q ss_pred hhHHhcCCChHHHHHHHH
Q 000755 1274 TKLLENKSSSFAQLVAEY 1291 (1300)
Q Consensus 1274 ~~l~~~~~~~f~~l~~~~ 1291 (1300)
+++++++...|.+...+.
T Consensus 515 ~~v~~~p~h~Ytr~L~~a 532 (539)
T COG1123 515 EKVFENPQHPYTRKLLAA 532 (539)
T ss_pred HHHhcCCCChHHHHHHHh
Confidence 999998887777665543
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-68 Score=663.88 Aligned_cols=543 Identities=21% Similarity=0.262 Sum_probs=441.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 291 TKALFFSAWKEIVFTAILALLYTLANYVGPYLIDTFVQYLNGEREFKNEGYVLVSTFFVAKIVECLAQRHWMFRLQVAGI 370 (1300)
Q Consensus 291 ~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~g~ 370 (1300)
++.+++.+++.+++..++.++..++....|++++.+++....... ....+.+++++++..++..+......+...+.+.
T Consensus 5 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 83 (571)
T TIGR02203 5 LWSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRD-RSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSN 83 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788889999999999999999999999999986543221 1122223333444445556666666677888899
Q ss_pred HHHHHHHHHHHHHHhcCCchhhcCCCHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 000755 371 KMRSVLVSMVYNKGLTLSCQAKQSYTSGEIINFMTVDAERIGDFGW-YMHDPWLVILQVSLALLIL-YKNLGLASIAALF 448 (1300)
Q Consensus 371 ~ir~~L~~~Iy~K~L~ls~~~~~~~~~G~Ivnl~s~Dv~~i~~~~~-~~~~~~~~~l~i~~~l~lL-~~~lg~~~l~~l~ 448 (1300)
++...++..+|+|.++.+...+.+.+.|+++++++.|++++.+++. .+..++...+.++++++++ +..+.+ +++.++
T Consensus 84 ~~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l-~~i~l~ 162 (571)
T TIGR02203 84 KVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQL-TLIVVV 162 (571)
T ss_pred HHHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHH
Confidence 9999999999999999999999999999999999999999998764 3444454444455544444 434433 344445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 449 ATVLIMLTNFPLGRLQENFQDKLMGSKDKRMKVTSEILRNMRILKLQGWEMKFLSKIIELRKIEAGWLKKFLYTGAMTSF 528 (1300)
Q Consensus 449 ~~~l~~~~~~~~~k~~~~~~~~~~~~~d~r~~~~~E~L~~ir~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~ 528 (1300)
++++.+.+..++.++.++..++..+..+++.+.++|.++|+++||.++.|+.+.+++++..+...+...+..........
T Consensus 163 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (571)
T TIGR02203 163 MLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSP 242 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666677888888899999999999999999999999999999999998888877655444433333222222222
Q ss_pred HHHHHH--HHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc
Q 000755 529 VFWGAP--TFVSVATFGACMLLGIPLESGKILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIASFLCLDDLQSDVVE 606 (1300)
Q Consensus 529 ~~~~~p--~~v~~~~f~~~~~~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~ 606 (1300)
+..... ..+.++.++++.+..+.+|+|.+++++.++..+..|+..+...+..+.+++++++|+.++++.++..+....
T Consensus 243 ~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~ 322 (571)
T TIGR02203 243 ITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGTR 322 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC
Confidence 222221 223445677777888999999999999999999999999999999999999999999999976554322111
Q ss_pred CCCCCCCcceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe-----
Q 000755 607 KHPRGSSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT----- 681 (1300)
Q Consensus 607 ~~~~~~~~~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~----- 681 (1300)
+.......|+++|++|+|++. ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 323 --~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~ 399 (571)
T TIGR02203 323 --AIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADY 399 (571)
T ss_pred --CCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhc
Confidence 111223469999999999743 468999999999999999999999999999999999999999999999983
Q ss_pred --------EEEEecCCcCCCCCHHHHHhcCCC--CCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHH
Q 000755 682 --------KAYVAQSPWIQSGNIEDNILFGKP--MDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQ 751 (1300)
Q Consensus 682 --------~ayv~Q~~~l~~~Ti~eNI~fg~~--~~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRia 751 (1300)
++||||+|++|++||+|||.++++ .++++++++++.|+++++++.+|+|++|.+||+|.+|||||||||+
T Consensus 400 ~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRia 479 (571)
T TIGR02203 400 TLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLA 479 (571)
T ss_pred CHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHH
Confidence 699999999999999999999964 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHhcC
Q 000755 752 IARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSG 831 (1300)
Q Consensus 752 LARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 831 (1300)
||||++++|+|++||||||+||+++++++.+ .+....+++|+|+|||+++.+..||+|++|++|++++.|+++++++..
T Consensus 480 LARall~~~~illLDEpts~LD~~~~~~i~~-~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~~ 558 (571)
T TIGR02203 480 IARALLKDAPILILDEATSALDNESERLVQA-ALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARN 558 (571)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHH-HHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHcC
Confidence 9999999999999999999999999999965 455666789999999999999999999999999999999999999877
Q ss_pred chHHHHHH
Q 000755 832 TDFMVLVG 839 (1300)
Q Consensus 832 ~~~~~l~~ 839 (1300)
..|.++..
T Consensus 559 ~~~~~~~~ 566 (571)
T TIGR02203 559 GLYAQLHN 566 (571)
T ss_pred CHHHHHHH
Confidence 77776654
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-67 Score=662.97 Aligned_cols=542 Identities=20% Similarity=0.248 Sum_probs=424.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 291 TKALFFSAWKEIVFTAILALLYTLANYVGPYLIDTFVQYLNGEREFKNE-GYVLVSTFFVAKIVECLAQRHWMFRLQVAG 369 (1300)
Q Consensus 291 ~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~-g~~l~~~l~~~~~~~~l~~~~~~~~~~~~g 369 (1300)
+..+++.+++.++...++.++..++..+.|+++..++|.+......... ...+++++++..++..+......+...+.+
T Consensus 14 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (592)
T PRK10790 14 LLAYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAA 93 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566778888888899999999999999999999976432221111 112233344444455666666677778888
Q ss_pred HHHHHHHHHHHHHHHhcCCchhhcCCCHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 000755 370 IKMRSVLVSMVYNKGLTLSCQAKQSYTSGEIINFMTVDAERIGDFGWYMH-DPWLVILQVSLALL-ILYKNLGLASIAAL 447 (1300)
Q Consensus 370 ~~ir~~L~~~Iy~K~L~ls~~~~~~~~~G~Ivnl~s~Dv~~i~~~~~~~~-~~~~~~l~i~~~l~-lL~~~lg~~~l~~l 447 (1300)
.++...++..+|+|.++++...+.+.++|+++|++++|++.+.+++.... .+....+.++++++ +++..+.++ ++.+
T Consensus 94 ~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-li~l 172 (592)
T PRK10790 94 VGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMA-LVAI 172 (592)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 99999999999999999999999999999999999999999998765432 33333333333333 333333333 2233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-
Q 000755 448 FATVLIMLTNFPLGRLQENFQDKLMGSKDKRMKVTSEILRNMRILKLQGWEMKFLSKIIELRKIEAGW-LKKFLYTGAM- 525 (1300)
Q Consensus 448 ~~~~l~~~~~~~~~k~~~~~~~~~~~~~d~r~~~~~E~L~~ir~IK~~~~E~~f~~~i~~~R~~E~~~-l~~~~~~~~~- 525 (1300)
+++++.+++..+..+..++..++..+..++..+.+.|.++|+++||.|+.|+.+.+++.+..+...+. .+........
T Consensus 173 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (592)
T PRK10790 173 MIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLL 252 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334445556666777777778888888999999999999999999999998887654433222 2211111110
Q ss_pred HHH--HHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Q 000755 526 TSF--VFWGAPTFVSVATFGACMLLGIPLESGKILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIASFLCLDDLQSD 603 (1300)
Q Consensus 526 ~~~--~~~~~p~~v~~~~f~~~~~~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~ 603 (1300)
..+ .......++ ++.++.+ ...+.++.|.+++++.++..+..|+..++..+..+.+++.+.+||.++++.++.+..
T Consensus 253 ~~~~~~~~~~~~~~-~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~ 330 (592)
T PRK10790 253 RPLLSLFSALILCG-LLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYG 330 (592)
T ss_pred HHHHHHHHHHHHHH-HHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCC
Confidence 111 111111111 1122223 457789999999999999999999999999999999999999999999976543221
Q ss_pred cccCCCCCCCcceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe--
Q 000755 604 VVEKHPRGSSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-- 681 (1300)
Q Consensus 604 ~~~~~~~~~~~~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-- 681 (1300)
.. .. ......|+++|++|+|+. ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 331 ~~-~~--~~~~~~i~~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i 405 (592)
T PRK10790 331 ND-DR--PLQSGRIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPL 405 (592)
T ss_pred CC-cc--CCCCCeEEEEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEh
Confidence 11 11 112346999999999973 357999999999999999999999999999999999999999999999983
Q ss_pred -----------EEEEecCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHH
Q 000755 682 -----------KAYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRI 750 (1300)
Q Consensus 682 -----------~ayv~Q~~~l~~~Ti~eNI~fg~~~~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRi 750 (1300)
++||||+|++|++||+|||.+|++.++++.+++++.++++++++.+|+|++|.+||+|.+|||||||||
T Consensus 406 ~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRi 485 (592)
T PRK10790 406 SSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLL 485 (592)
T ss_pred hhCCHHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 699999999999999999999998999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHhc
Q 000755 751 QIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNS 830 (1300)
Q Consensus 751 aLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 830 (1300)
+||||++++|+|+|||||||+||+++++.+.+ .+....+++|+|+||||++.++.||+|++|++|++++.|+|+|+++.
T Consensus 486 alARaLl~~~~illlDEpts~LD~~t~~~i~~-~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~ 564 (592)
T PRK10790 486 ALARVLVQTPQILILDEATANIDSGTEQAIQQ-ALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAA 564 (592)
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHH-HHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999998865 55666678999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHH
Q 000755 831 GTDFMVLVGAH 841 (1300)
Q Consensus 831 ~~~~~~l~~~~ 841 (1300)
++.|.++...+
T Consensus 565 ~~~y~~l~~~~ 575 (592)
T PRK10790 565 QGRYWQMYQLQ 575 (592)
T ss_pred CCHHHHHHHHH
Confidence 99999887644
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-70 Score=688.58 Aligned_cols=482 Identities=24% Similarity=0.366 Sum_probs=359.6
Q ss_pred ceEEEEeEEEEecCCC-CCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC-------------
Q 000755 615 TAIEIVDGNFAWDISS-NNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG------------- 680 (1300)
Q Consensus 615 ~~I~i~~~~fs~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g------------- 680 (1300)
..++++|++++|.... ..++|+||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 11 ~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~ 90 (623)
T PRK10261 11 DVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIEL 90 (623)
T ss_pred ceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccccc
Confidence 3699999999996322 34799999999999999999999999999999999999999999998754
Q ss_pred --------------eEEEEecCC--cCC-CCCHHHHHhcCCC----CCH----HHHHHHHHHhcchHHHhhccCCCcccc
Q 000755 681 --------------TKAYVAQSP--WIQ-SGNIEDNILFGKP----MDR----EKYDRVLEACSLKKDLEILSFGDQTVI 735 (1300)
Q Consensus 681 --------------~~ayv~Q~~--~l~-~~Ti~eNI~fg~~----~~~----~~~~~vl~~~~l~~dl~~l~~Gd~t~i 735 (1300)
.++||+|+| -++ ..||.|||.++.. .+. ++..++++..++.+. ....
T Consensus 91 ~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~--------~~~~ 162 (623)
T PRK10261 91 SEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEA--------QTIL 162 (623)
T ss_pred ccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------hhHH
Confidence 379999998 354 4699999987521 222 234444544444210 1223
Q ss_pred cCCCCCCCHHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc-C-CcEEEEEecCCCcccc-CCEEEE
Q 000755 736 GERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-R-SKTVIYVTHQVEFLPA-ADLILV 812 (1300)
Q Consensus 736 ge~g~~LSGGQkqRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l-~-~~TvIlvtH~~~~l~~-~d~i~~ 812 (1300)
.....+|||||||||+|||||+.+|++|||||||++||+.+.+.+.+ ++..+. + ++|+|+|||+++.+.. ||+|++
T Consensus 163 ~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~-ll~~l~~~~g~tvi~itHdl~~~~~~adri~v 241 (623)
T PRK10261 163 SRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQ-LIKVLQKEMSMGVIFITHDMGVVAEIADRVLV 241 (623)
T ss_pred hCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHH-HHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEE
Confidence 55677899999999999999999999999999999999999888875 555543 3 7899999999998765 999999
Q ss_pred EeCCeEEEecChHHHHhcCc-hHHH-HHHHHHHHhhhhcccCCCCccccccccccCCCccccccccccCccccccccchh
Q 000755 813 MKDGKITQAGKYNDILNSGT-DFMV-LVGAHQQALSALDSIEGGPVSERISMNKENGGMDTTNGVTMKEGNEDIQTDKVD 890 (1300)
Q Consensus 813 l~~G~i~~~g~~~~l~~~~~-~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~~lp~grnr~s~D~v~ 890 (1300)
|++|+|++.|++++++.... .|.. +.. ..
T Consensus 242 l~~G~i~~~g~~~~~~~~~~~~~~~~l~~-------~~------------------------------------------ 272 (623)
T PRK10261 242 MYQGEAVETGSVEQIFHAPQHPYTRALLA-------AV------------------------------------------ 272 (623)
T ss_pred eeCCeecccCCHHHhhcCCCChhhhhhhh-------cc------------------------------------------
Confidence 99999999999988754221 0000 000 00
Q ss_pred hhhhhHHHHHHHHHHhhhhhhHHHHHHHHhhchHHHHHhcchHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHH
Q 000755 891 EQYYIPSARELSRLVGVCKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFHIAGAMEWLCFRLDMLSSL 970 (1300)
Q Consensus 891 ~~~y~~~~r~l~rl~~~~~sp~~~~~~E~l~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~ 970 (1300)
| ...+ ..| . .
T Consensus 273 --------------------~---~~~~-~~~--------~---------------~----------------------- 282 (623)
T PRK10261 273 --------------------P---QLGA-MKG--------L---------------D----------------------- 282 (623)
T ss_pred --------------------C---cccc-ccc--------c---------------c-----------------------
Confidence 0 0000 000 0 0
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CCCCccccCCCCCCC
Q 000755 971 TFAFSLVLLISIPKGVIEPAIAGLAVTYGLNLNMLQAWVIWNLCNLENKIISVERILQYTCISS-EPPLVIEESRPDCSW 1049 (1300)
Q Consensus 971 ~~~~~~~~~~~~~~g~~~~~~~gl~l~~~~~~~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~-e~~~~~~~~~~~~~w 1049 (1300)
.+ +.. ++.. ...+. +.+...... .+
T Consensus 283 -----------~~-~~~------------------------------------~~~~--~~~~~~~~~~~~~~~-~~--- 308 (623)
T PRK10261 283 -----------YP-RRF------------------------------------PLIS--LEHPAKQEPPIEQDT-VV--- 308 (623)
T ss_pred -----------CC-ccc------------------------------------cccc--cccccccCccccccc-cc---
Confidence 00 000 0000 00000 000000000 00
Q ss_pred CCCceEEEEeeeeeeCCC---------CCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeec
Q 000755 1050 PTHGEVDILNLQVRYAPH---------LPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINI 1120 (1300)
Q Consensus 1050 p~~g~i~~~~v~~~y~~~---------~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di 1120 (1300)
+....++++|+++.|+.. ...+|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus 309 ~~~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i 388 (623)
T PRK10261 309 DGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRI 388 (623)
T ss_pred CCCceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEEC
Confidence 112359999999999621 13589999999999999999999999999999999999999999999999999
Q ss_pred CCCCHH---HHhcccEEEcCCC--CCCcc-cHHHhcCC-C---CCCC----HHHHHHHHHHcCCc-HHHHhhcCCCcccc
Q 000755 1121 SSIGLH---DLRSRLSIIPQDP--TMFEG-TVRNNLDP-L---EEYK----DEEIWEALDKCQLG-DEVRNKEGKLDSRV 1185 (1300)
Q Consensus 1121 ~~i~~~---~lr~~i~~vpQ~~--~lf~g-Tvr~Nl~~-~---~~~~----d~~i~~~l~~~~l~-~~i~~~~~gLdt~v 1185 (1300)
...+.. .+|++++||||+| .++.. ||.+|+.. . .... ++++.++|+.+++. +...+.
T Consensus 389 ~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~-------- 460 (623)
T PRK10261 389 DTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRY-------- 460 (623)
T ss_pred CcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCC--------
Confidence 876543 3567899999998 36654 99999852 1 1111 24567788888885 333332
Q ss_pred ccCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhc-cCEEEEE
Q 000755 1186 TENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVID-SDMVLLL 1262 (1300)
Q Consensus 1186 ~e~G~~LSgGqrQrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~-~D~v~vl 1262 (1300)
...||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++..+ +.|||+|||+++.+.. ||||++|
T Consensus 461 ---~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl 537 (623)
T PRK10261 461 ---PHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVM 537 (623)
T ss_pred ---cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 356899999999999999999999999999999999999999999988643 6899999999999987 9999999
Q ss_pred eCCEEEEecChhhHHhcCCChHH-HHHH
Q 000755 1263 SHGIIEEYDSPTKLLENKSSSFA-QLVA 1289 (1300)
Q Consensus 1263 ~~G~i~e~g~~~~l~~~~~~~f~-~l~~ 1289 (1300)
++|+|++.|++++++.++...|. .++.
T Consensus 538 ~~G~iv~~g~~~~i~~~p~~~~~~~l~~ 565 (623)
T PRK10261 538 YLGQIVEIGPRRAVFENPQHPYTRKLMA 565 (623)
T ss_pred ECCEEEEecCHHHHhcCCCCHHHHHHHh
Confidence 99999999999999876655454 3444
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-70 Score=654.36 Aligned_cols=402 Identities=26% Similarity=0.356 Sum_probs=349.9
Q ss_pred hhhhhhHHHHHHHHHHhhhhhhHHHHHHHHhhchHHHHHhcchHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Q 000755 890 DEQYYIPSARELSRLVGVCKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFHIAGAMEWLCFRLDMLSS 969 (1300)
Q Consensus 890 ~~~~y~~~~r~l~rl~~~~~sp~~~~~~E~l~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~ 969 (1300)
..++|-+..|++.+....+-+...+...|.+++++|+|+|+.|+.-.+++.+.++.-.+.......+...+....++.+.
T Consensus 304 ~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f~~~~~~~~~ 383 (716)
T KOG0058|consen 304 VAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYGIFFGSTNLLGN 383 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHhHhHHHHHHh
Confidence 45677777788888888888889999999999999999999998777777666655444443333333333333344444
Q ss_pred HHHHHHHHH-HHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccCCCCCC
Q 000755 970 LTFAFSLVL-LISIPKGVIEPAIAGLAVTYGLNLNMLQAWVIWNLCNLENKIISVERILQYTCISSEPPLVIEESRPDCS 1048 (1300)
Q Consensus 970 ~~~~~~~~~-~~~~~~g~~~~~~~gl~l~~~~~~~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~ 1048 (1300)
+....++.. ...+..|.+++|....++.|...+...+.++...+.++-+.+.|.+|++||++.++.-+.. ....| .
T Consensus 384 ~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~--G~~~p-~ 460 (716)
T KOG0058|consen 384 LAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLT--GTLAP-D 460 (716)
T ss_pred HHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCC--Ccccc-c
Confidence 443333333 3456788999999999999999999999999999999999999999999999976544322 11111 1
Q ss_pred CCCCceEEEEeeeeeeCCC-CCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHH
Q 000755 1049 WPTHGEVDILNLQVRYAPH-LPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHD 1127 (1300)
Q Consensus 1049 wp~~g~i~~~~v~~~y~~~-~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~ 1127 (1300)
.-+|.|+|+||+|.|+.+ ..+||||+||+|+|||+||+|||||+||||++++|.|+|+|++|+|.+||+||++++.+.
T Consensus 461 -~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~ 539 (716)
T KOG0058|consen 461 -HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKY 539 (716)
T ss_pred -cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHH
Confidence 458999999999999765 236999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcccEEEcCCCCCCcccHHHhcCCC-CCCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHH
Q 000755 1128 LRSRLSIIPQDPTMFEGTVRNNLDPL-EEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVL 1206 (1300)
Q Consensus 1128 lr~~i~~vpQ~~~lf~gTvr~Nl~~~-~~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARal 1206 (1300)
||++||+|.|||.||++||+|||.+. ...+||+|..|.++++.++||.++|+|+||.|||.|..||||||||+||||||
T Consensus 540 lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARAL 619 (716)
T KOG0058|consen 540 LRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARAL 619 (716)
T ss_pred HHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHH
Confidence 99999999999999999999999865 46899999999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhccCEEEEEeCCEEEEecChhhHHhcCCChHHH
Q 000755 1207 LKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQ 1286 (1300)
Q Consensus 1207 l~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~~D~v~vl~~G~i~e~g~~~~l~~~~~~~f~~ 1286 (1300)
++||+|||||||||+||.++|..++++|.+..+++|||+||||++|++.+|+|+|+++|+|+|.|+|+||+++++|.|++
T Consensus 620 lr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~~~~gly~~ 699 (716)
T KOG0058|consen 620 LRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLSKPNGLYAK 699 (716)
T ss_pred hcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHhhCcccHHHH
Confidence 99999999999999999999999999999998999999999999999999999999999999999999999998899999
Q ss_pred HHHHHhhhc
Q 000755 1287 LVAEYTQRS 1295 (1300)
Q Consensus 1287 l~~~~~~~~ 1295 (1300)
|++++....
T Consensus 700 Lv~~q~~~~ 708 (716)
T KOG0058|consen 700 LVQRQLDSG 708 (716)
T ss_pred HHHHhcccC
Confidence 999876543
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-70 Score=675.25 Aligned_cols=450 Identities=24% Similarity=0.414 Sum_probs=349.4
Q ss_pred eEEEEeEEEEecCC-CCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccC-----CccEEEEcC---------
Q 000755 616 AIEIVDGNFAWDIS-SNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK-----ISGTLKLCG--------- 680 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~-~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~-----~~G~i~~~g--------- 680 (1300)
.++++|++++|+.. ..+++|+|+||+|++||+++|+||||||||||+++|+|.++| ++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999632 135799999999999999999999999999999999999986 799998865
Q ss_pred --------eEEEEecCCc--CC-CCCHHHHHhcCC----CCC----HHHHHHHHHHhcchHHHhhccCCCcccccCCCCC
Q 000755 681 --------TKAYVAQSPW--IQ-SGNIEDNILFGK----PMD----REKYDRVLEACSLKKDLEILSFGDQTVIGERGIN 741 (1300)
Q Consensus 681 --------~~ayv~Q~~~--l~-~~Ti~eNI~fg~----~~~----~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~ 741 (1300)
.++|++|+|. ++ ..|+++|+.++. ..+ .++.+++++.+++.+.. ........+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~--------~~~~~~~~~ 156 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAA--------KRLTDYPHQ 156 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--------HHHhhCCcc
Confidence 3799999985 33 358999987421 122 23445556655553211 012445678
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEecCCCcccc-CCEEEEEeCCeE
Q 000755 742 LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL--RSKTVIYVTHQVEFLPA-ADLILVMKDGKI 818 (1300)
Q Consensus 742 LSGGQkqRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l--~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i 818 (1300)
||||||||++|||||+.+|+++||||||++||+.+.+.+.+ ++..+. .++|+|+|||+++.+.. ||+|++|++|++
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~-~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i 235 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQ-LLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRC 235 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHH-HHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEE
Confidence 99999999999999999999999999999999999988875 454442 37899999999998765 999999999999
Q ss_pred EEecChHHHHhcCchHHHHHHHHHHHhhhhcccCCCCccccccccccCCCccccccccccCccccccccchhhhhhhHHH
Q 000755 819 TQAGKYNDILNSGTDFMVLVGAHQQALSALDSIEGGPVSERISMNKENGGMDTTNGVTMKEGNEDIQTDKVDEQYYIPSA 898 (1300)
Q Consensus 819 ~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~~lp~grnr~s~D~v~~~~y~~~~ 898 (1300)
++.|+++++...... . + .
T Consensus 236 ~~~g~~~~~~~~~~~--~---------------------------------------------------------~---~ 253 (529)
T PRK15134 236 VEQNRAATLFSAPTH--P---------------------------------------------------------Y---T 253 (529)
T ss_pred EEeCCHHHHhhCCCC--H---------------------------------------------------------H---H
Confidence 999988776431100 0 0 0
Q ss_pred HHHHHHHhhhhhhHHHHHHHHhhchHHHHHhcchHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 899 RELSRLVGVCKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFHIAGAMEWLCFRLDMLSSLTFAFSLVL 978 (1300)
Q Consensus 899 r~l~rl~~~~~sp~~~~~~E~l~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~ 978 (1300)
+ .+.
T Consensus 254 ----------------------------~------~~~------------------------------------------ 257 (529)
T PRK15134 254 ----------------------------Q------KLL------------------------------------------ 257 (529)
T ss_pred ----------------------------H------HHH------------------------------------------
Confidence 0 000
Q ss_pred HHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccCCCCCCCCCCceEEEE
Q 000755 979 LISIPKGVIEPAIAGLAVTYGLNLNMLQAWVIWNLCNLENKIISVERILQYTCISSEPPLVIEESRPDCSWPTHGEVDIL 1058 (1300)
Q Consensus 979 ~~~~~~g~~~~~~~gl~l~~~~~~~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~i~~~ 1058 (1300)
+. .+...+. ..++ +....|+++
T Consensus 258 --------------------------------------~~-------------~~~~~~~----~~~~---~~~~~l~~~ 279 (529)
T PRK15134 258 --------------------------------------NS-------------EPSGDPV----PLPE---PASPLLDVE 279 (529)
T ss_pred --------------------------------------Hh-------------Ccccccc----ccCC---CCCCccccc
Confidence 00 0000000 0000 012258999
Q ss_pred eeeeeeCC---------CCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHH--
Q 000755 1059 NLQVRYAP---------HLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHD-- 1127 (1300)
Q Consensus 1059 ~v~~~y~~---------~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~-- 1127 (1300)
|++++|+. +...+|+|+||+|++||++||+||||||||||+++|+|++ |++|+|.+||.++...+..+
T Consensus 280 ~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~~~g~~i~~~~~~~~~ 358 (529)
T PRK15134 280 QLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLNRRQLL 358 (529)
T ss_pred CcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCcEEEECCEEccccchhhHH
Confidence 99999952 1246999999999999999999999999999999999998 48999999999987766543
Q ss_pred -HhcccEEEcCCC--CCCcc-cHHHhcCCC---C--CCC----HHHHHHHHHHcCCcH-HHHhhcCCCccccccCCCCCC
Q 000755 1128 -LRSRLSIIPQDP--TMFEG-TVRNNLDPL---E--EYK----DEEIWEALDKCQLGD-EVRNKEGKLDSRVTENGENWS 1193 (1300)
Q Consensus 1128 -lr~~i~~vpQ~~--~lf~g-Tvr~Nl~~~---~--~~~----d~~i~~~l~~~~l~~-~i~~~~~gLdt~v~e~G~~LS 1193 (1300)
+|++++|+||++ .+|.. |+++|+... . ... ++.+.++++.+++.+ ...+ ...+||
T Consensus 359 ~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~~LS 427 (529)
T PRK15134 359 PVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHR-----------YPAEFS 427 (529)
T ss_pred HhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhc-----------CCccCC
Confidence 467899999998 36654 999998531 1 111 234667888888752 3222 335789
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhc-cCEEEEEeCCEEEEe
Q 000755 1194 MGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGIIEEY 1270 (1300)
Q Consensus 1194 gGqrQrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~ 1270 (1300)
||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++..+ ++|||+|||+++.+.. ||+|++|++|++++.
T Consensus 428 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~ 507 (529)
T PRK15134 428 GGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQ 507 (529)
T ss_pred HHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999998642 6899999999999987 999999999999999
Q ss_pred cChhhHHhcCCC
Q 000755 1271 DSPTKLLENKSS 1282 (1300)
Q Consensus 1271 g~~~~l~~~~~~ 1282 (1300)
|+++++++++..
T Consensus 508 ~~~~~~~~~~~~ 519 (529)
T PRK15134 508 GDCERVFAAPQQ 519 (529)
T ss_pred cCHHHHhcCCCC
Confidence 999999875443
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-67 Score=655.87 Aligned_cols=547 Identities=22% Similarity=0.266 Sum_probs=432.0
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 289 KLTKALFFSAWKEIVFTAILALLYTLANYVGPYLIDTFVQYLNGEREFKNEGYVLVSTFFVAKIVECLAQRHWMFRLQVA 368 (1300)
Q Consensus 289 ~l~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~ 368 (1300)
+.++.+++.+++.+++..++.++..++.++.|++++.++|.+-....... ...+++.+++..++..+......+...++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (576)
T TIGR02204 7 AALWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDSSGL-LNRYFAFLLVVALVLALGTAARFYLVTWL 85 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667778888888889999999999999999999997432221111 11122223333334445555566777889
Q ss_pred HHHHHHHHHHHHHHHHhcCCchhhcCCCHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 000755 369 GIKMRSVLVSMVYNKGLTLSCQAKQSYTSGEIINFMTVDAERIGDFGW-YMHDPWLVILQVSLALL-ILYKNLGLASIAA 446 (1300)
Q Consensus 369 g~~ir~~L~~~Iy~K~L~ls~~~~~~~~~G~Ivnl~s~Dv~~i~~~~~-~~~~~~~~~l~i~~~l~-lL~~~lg~~~l~~ 446 (1300)
+.++...++..+|+|.++++...+++.+.|++++++++|++.+.+++. .+..++...+.++++++ +++..+.++.++.
T Consensus 86 ~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 165 (576)
T TIGR02204 86 GERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVL 165 (576)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 999999999999999999999988999999999999999999988754 33343444444444433 3334444443333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 447 LFATVLIMLTNFPLGRLQENFQDKLMGSKDKRMKVTSEILRNMRILKLQGWEMKFLSKIIELRKIEAGWLKKFLYTGAMT 526 (1300)
Q Consensus 447 l~~~~l~~~~~~~~~k~~~~~~~~~~~~~d~r~~~~~E~L~~ir~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~~~~~~ 526 (1300)
+.+++.+.+..++.+..++..++.++..+++.+.+.|.++|+++||.+++|+.+.+++.+..+...+...+........
T Consensus 166 -~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (576)
T TIGR02204 166 -LAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALL 244 (576)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444557777888888889999999999999999999999999999988888765443333322222111111
Q ss_pred HHHH--HHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc
Q 000755 527 SFVF--WGAPTFVSVATFGACMLLGIPLESGKILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIASFLCLDDLQSDV 604 (1300)
Q Consensus 527 ~~~~--~~~p~~v~~~~f~~~~~~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~ 604 (1300)
.... ......+.++.++++.+..+.++.|.++++..++..+..|+..++..+..+.+++++++|+.++++.++..+..
T Consensus 245 ~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~ 324 (576)
T TIGR02204 245 TAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAP 324 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCC
Confidence 1111 11122344456677888889999999999999999999999999999999999999999999999765432211
Q ss_pred ccCC-CCCCCcceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC---
Q 000755 605 VEKH-PRGSSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--- 680 (1300)
Q Consensus 605 ~~~~-~~~~~~~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g--- 680 (1300)
.... ........|+++|++|+|+.++++++|+|+||+++|||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 325 ~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i 404 (576)
T TIGR02204 325 AHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDL 404 (576)
T ss_pred CCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEH
Confidence 1111 111123469999999999754346899999999999999999999999999999999999999999999998
Q ss_pred ----------eEEEEecCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHH
Q 000755 681 ----------TKAYVAQSPWIQSGNIEDNILFGKP-MDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQR 749 (1300)
Q Consensus 681 ----------~~ayv~Q~~~l~~~Ti~eNI~fg~~-~~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqR 749 (1300)
.++||||+|++|++||+|||.+|.| .++++.+++++.+++.++++.+|.|++|.+||+|.+||||||||
T Consensus 405 ~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qr 484 (576)
T TIGR02204 405 RQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQR 484 (576)
T ss_pred HhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHH
Confidence 3699999999999999999999886 57889999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHh
Q 000755 750 IQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILN 829 (1300)
Q Consensus 750 iaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 829 (1300)
++||||++++|++++||||||+||+++++.+++ .+....+++|+|+|||+++.++.||+|++|++|++++.|+++++.+
T Consensus 485 l~laRal~~~~~ililDEpts~lD~~~~~~i~~-~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~ 563 (576)
T TIGR02204 485 IAIARAILKDAPILLLDEATSALDAESEQLVQQ-ALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIA 563 (576)
T ss_pred HHHHHHHHhCCCeEEEeCcccccCHHHHHHHHH-HHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHH
Confidence 999999999999999999999999999888765 5566667899999999999999999999999999999999999998
Q ss_pred cCchHHHHH
Q 000755 830 SGTDFMVLV 838 (1300)
Q Consensus 830 ~~~~~~~l~ 838 (1300)
.++.|.++.
T Consensus 564 ~~~~~~~l~ 572 (576)
T TIGR02204 564 KGGLYARLA 572 (576)
T ss_pred cCChHHHHH
Confidence 888887765
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-67 Score=652.84 Aligned_cols=542 Identities=21% Similarity=0.263 Sum_probs=421.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCc--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 293 ALFFSAWKEIVFTAILALLYTLANYVGPYLIDTFVQYLN-GERE--FKNEGYVLVSTFFVAKIVECLAQRHWMFRLQVAG 369 (1300)
Q Consensus 293 ~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~l~-~~~~--~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~g 369 (1300)
.+++.+++.++++.++.++..++..+.|++++.+++... .... ........++++++..++..++.....+...+.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (574)
T PRK11160 9 KLYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVSHDAT 88 (574)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888999999999999999999999999642 2110 0011111122333344455666666667788899
Q ss_pred HHHHHHHHHHHHHHHhcCCchhhcCCCHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 000755 370 IKMRSVLVSMVYNKGLTLSCQAKQSYTSGEIINFMTVDAERIGDFGWY-MHDPWLVILQVSLALL-ILYKNLGLASIAAL 447 (1300)
Q Consensus 370 ~~ir~~L~~~Iy~K~L~ls~~~~~~~~~G~Ivnl~s~Dv~~i~~~~~~-~~~~~~~~l~i~~~l~-lL~~~lg~~~l~~l 447 (1300)
.++...++..+|+|.++++...+++.++|++++++++|++.+++++.. +..+....+.++++++ +++..+.++.++.+
T Consensus 89 ~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~ 168 (574)
T PRK11160 89 FRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLALTLGG 168 (574)
T ss_pred HHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999997654 3333444444444333 33444444443333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 448 FATVLIMLTNFPLGRLQENFQDKLMGSKDKRMKVTSEILRNMRILKLQGWEMKFLSKIIELRKIEAGWLKKFLYTGAMTS 527 (1300)
Q Consensus 448 ~~~~l~~~~~~~~~k~~~~~~~~~~~~~d~r~~~~~E~L~~ir~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~~~~~~~ 527 (1300)
++.++.+++...+.++.++..++.++..++..+.+.|.++|+++||.|+.|+.+.+++.+..++-.+...+.........
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (574)
T PRK11160 169 ILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGLSQ 248 (574)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33222233334556777777888888899999999999999999999999999888886654433332222222222111
Q ss_pred HH-HHHH-HHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc
Q 000755 528 FV-FWGA-PTFVSVATFGACMLLGIPLESGKILSALATFRI-LQEPIYNLPDTISMIIQTKVSLDRIASFLCLDDLQSDV 604 (1300)
Q Consensus 528 ~~-~~~~-p~~v~~~~f~~~~~~~~~Lt~g~vft~lal~~~-l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~ 604 (1300)
.+ .... ...+.++.++++. .++.++.|.+++++.+... ...|+..++..+..+.+++.|.+||.++++.++..+..
T Consensus 249 ~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~~ 327 (574)
T PRK11160 249 ALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTFP 327 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 11 1111 1222334455555 4678899998887766544 45788999999999999999999999999765432211
Q ss_pred ccCCCCCCCcceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe---
Q 000755 605 VEKHPRGSSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--- 681 (1300)
Q Consensus 605 ~~~~~~~~~~~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~--- 681 (1300)
... ........|+++|++|+|+++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 328 ~~~-~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~ 405 (574)
T PRK11160 328 TTS-TAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIA 405 (574)
T ss_pred ccc-CCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhh
Confidence 111 111223579999999999742 357999999999999999999999999999999999999999999999984
Q ss_pred ----------EEEEecCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHH
Q 000755 682 ----------KAYVAQSPWIQSGNIEDNILFGKP-MDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRI 750 (1300)
Q Consensus 682 ----------~ayv~Q~~~l~~~Ti~eNI~fg~~-~~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRi 750 (1300)
++||+|+|++|++||+|||.+|.+ .++++++++++.++++++++. |+|++|.+||+|.+|||||||||
T Consensus 406 ~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrqRi 484 (574)
T PRK11160 406 DYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRL 484 (574)
T ss_pred hCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHHHHHH
Confidence 699999999999999999999986 688999999999999999999 99999999999999999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHhc
Q 000755 751 QIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNS 830 (1300)
Q Consensus 751 aLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 830 (1300)
+||||++++|+|++||||||+||+++++.+.+ .+....+++|+|+||||++.++.||+|++|++|++++.|+|+|+++.
T Consensus 485 alARall~~~~ililDE~ts~lD~~t~~~i~~-~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 563 (574)
T PRK11160 485 GIARALLHDAPLLLLDEPTEGLDAETERQILE-LLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQ 563 (574)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHhc
Confidence 99999999999999999999999999998865 56666679999999999999999999999999999999999999999
Q ss_pred CchHHHHHH
Q 000755 831 GTDFMVLVG 839 (1300)
Q Consensus 831 ~~~~~~l~~ 839 (1300)
++.|.++..
T Consensus 564 ~g~y~~l~~ 572 (574)
T PRK11160 564 QGRYYQLKQ 572 (574)
T ss_pred CcHHHHHHh
Confidence 988887753
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-70 Score=671.20 Aligned_cols=438 Identities=23% Similarity=0.359 Sum_probs=341.6
Q ss_pred eEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccC--CccEEEEcCe------------
Q 000755 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK--ISGTLKLCGT------------ 681 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~--~~G~i~~~g~------------ 681 (1300)
.++++|++++|+ +.++|+|+||+|++|++++|+||||||||||+++|+|.++| ++|+|.++|.
T Consensus 5 ~l~~~nl~~~~~---~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 5 LLEMKNITKTFG---GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred eEEEeeeEEEeC---CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 489999999995 35799999999999999999999999999999999999996 8999999762
Q ss_pred --EEEEecCCcCCC-CCHHHHHhcCCC------CCHH----HHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHH
Q 000755 682 --KAYVAQSPWIQS-GNIEDNILFGKP------MDRE----KYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQ 748 (1300)
Q Consensus 682 --~ayv~Q~~~l~~-~Ti~eNI~fg~~------~~~~----~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkq 748 (1300)
++||+|++.++. .|++||+.++.. .+.+ +.+++++..++ .........+|||||||
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgGqkq 150 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKL-----------DINPATPVGNLGLGQQQ 150 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCC-----------CCCcccchhhCCHHHHH
Confidence 799999998765 599999998743 1222 22223333222 22335566789999999
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhh-cCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHH
Q 000755 749 RIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LRSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYND 826 (1300)
Q Consensus 749 RiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~-l~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 826 (1300)
|++||||++.+|+++||||||++||+.+...+++ .+..+ .+++|+|++||+++.+.. ||+|++|++|++++.|+.++
T Consensus 151 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 229 (506)
T PRK13549 151 LVEIAKALNKQARLLILDEPTASLTESETAVLLD-IIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAG 229 (506)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeeccccc
Confidence 9999999999999999999999999999988875 44443 357899999999999875 99999999999998886544
Q ss_pred HHhcCchHHHHHHHHHHHhhhhcccCCCCccccccccccCCCccccccccccCccccccccchhhhhhhHHHHHHHHHHh
Q 000755 827 ILNSGTDFMVLVGAHQQALSALDSIEGGPVSERISMNKENGGMDTTNGVTMKEGNEDIQTDKVDEQYYIPSARELSRLVG 906 (1300)
Q Consensus 827 l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~~lp~grnr~s~D~v~~~~y~~~~r~l~rl~~ 906 (1300)
+... .. +
T Consensus 230 ~~~~-----~~---------------------------------------------------------------~----- 236 (506)
T PRK13549 230 MTED-----DI---------------------------------------------------------------I----- 236 (506)
T ss_pred CCHH-----HH---------------------------------------------------------------H-----
Confidence 3100 00 0
Q ss_pred hhhhhHHHHHHHHhhchHHHHHhcchHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 000755 907 VCKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFHIAGAMEWLCFRLDMLSSLTFAFSLVLLISIPKGV 986 (1300)
Q Consensus 907 ~~~sp~~~~~~E~l~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~~~~~~g~ 986 (1300)
+.. + +.
T Consensus 237 -----------~~~--------~-------------------------------------------------------~~ 242 (506)
T PRK13549 237 -----------TMM--------V-------------------------------------------------------GR 242 (506)
T ss_pred -----------HHh--------h-------------------------------------------------------Cc
Confidence 000 0 00
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccCCCCCCCCCCceEEEEeeeeeeCC
Q 000755 987 IEPAIAGLAVTYGLNLNMLQAWVIWNLCNLENKIISVERILQYTCISSEPPLVIEESRPDCSWPTHGEVDILNLQVRYAP 1066 (1300)
Q Consensus 987 ~~~~~~gl~l~~~~~~~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~i~~~~v~~~y~~ 1066 (1300)
.. .+ . .+.++ ++ +....|+++|++++|+.
T Consensus 243 -~~----------------------------------~~---~--~~~~~--------~~---~~~~~l~~~~l~~~~~~ 271 (506)
T PRK13549 243 -EL----------------------------------TA---L--YPREP--------HT---IGEVILEVRNLTAWDPV 271 (506)
T ss_pred -Cc----------------------------------cc---c--ccccc--------cC---CCCceEEEecCcccccc
Confidence 00 00 0 00000 00 11235999999999952
Q ss_pred -CCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCC-CCcceEEECCeecCCCCH-HHHhcccEEEcCCC---C
Q 000755 1067 -HLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVE-PTAGEIVIDGINISSIGL-HDLRSRLSIIPQDP---T 1140 (1300)
Q Consensus 1067 -~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~-p~~G~I~idg~di~~i~~-~~lr~~i~~vpQ~~---~ 1140 (1300)
+..++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++...+. +..|.+++|+||++ .
T Consensus 272 ~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 351 (506)
T PRK13549 272 NPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDG 351 (506)
T ss_pred ccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCC
Confidence 12359999999999999999999999999999999999999 599999999999865543 34567899999996 3
Q ss_pred CCc-ccHHHhcCCC--CC------CC----HHHHHHHHHHcCCc-HHHHhhcCCCccccccCCCCCChhHHHHHHHHHHH
Q 000755 1141 MFE-GTVRNNLDPL--EE------YK----DEEIWEALDKCQLG-DEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVL 1206 (1300)
Q Consensus 1141 lf~-gTvr~Nl~~~--~~------~~----d~~i~~~l~~~~l~-~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARal 1206 (1300)
+|. .|+.+|+... .. .. .+++.++++++++. +.. ......||||||||++||||+
T Consensus 352 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~~LSgG~kqrv~lA~al 420 (506)
T PRK13549 352 IVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASP-----------ELAIARLSGGNQQKAVLAKCL 420 (506)
T ss_pred CcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCc-----------ccccccCCHHHHHHHHHHHHH
Confidence 565 4999998632 11 11 12456677777763 221 223457999999999999999
Q ss_pred ccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHH
Q 000755 1207 LKKSKVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLL 1277 (1300)
Q Consensus 1207 l~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~ 1277 (1300)
+.+|++|||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||++++|++|+++..|+++++.
T Consensus 421 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 493 (506)
T PRK13549 421 LLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHNLT 493 (506)
T ss_pred hhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEeccccCC
Confidence 99999999999999999999999999998764 47899999999999987 9999999999999999888764
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-67 Score=650.76 Aligned_cols=505 Identities=20% Similarity=0.214 Sum_probs=389.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 292 KALFFSAWKEIVFTAILALLYTLANYVGPYLIDTFVQYLNGEREFKNEGYVLVSTFFVAKIVECLAQRHWMFRLQVAGIK 371 (1300)
Q Consensus 292 ~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~g~~ 371 (1300)
+.+++.+++.++...++.++..++..+.|++++.++|.+..... ....+.+++++++..++..+......+...+.+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (529)
T TIGR02868 5 LPLLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPP-VLYLSVAAVAVRAFGIGRAVFRYLERLVGHDAALR 83 (529)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677778888888899999999999999999997653221 11111111112223344555555556667788889
Q ss_pred HHHHHHHHHHHHHhcCCchhhcCCCHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 000755 372 MRSVLVSMVYNKGLTLSCQAKQSYTSGEIINFMTVDAERIGDFGWY-MHDPWLVILQVSLALLI-LYKNLGLASIAALFA 449 (1300)
Q Consensus 372 ir~~L~~~Iy~K~L~ls~~~~~~~~~G~Ivnl~s~Dv~~i~~~~~~-~~~~~~~~l~i~~~l~l-L~~~lg~~~l~~l~~ 449 (1300)
+...++..+|+|.++++...++++++|+++|++++|++.+.+++.. +..+....+.+++++++ ++..+.++ ++.++.
T Consensus 84 ~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~-l~~l~~ 162 (529)
T TIGR02868 84 SLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAA-LVLAAG 162 (529)
T ss_pred HHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHH
Confidence 9999999999999999999999999999999999999999987654 33334334433334333 33333333 232332
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 450 TVLIMLT-NFPLGRLQENFQDKLMGSKDKRMKVTSEILRNMRILKLQGWEMKFLSKIIELRKIEAGWLKKFLYTGAMTSF 528 (1300)
Q Consensus 450 ~~l~~~~-~~~~~k~~~~~~~~~~~~~d~r~~~~~E~L~~ir~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~ 528 (1300)
++++.++ .....+..++..++..+..++..+.+.|.++|+++||.|++|+.+.+++.+..+...+...+..........
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (529)
T TIGR02868 163 LLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAA 242 (529)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222 233334445556677788899999999999999999999999999999877655444433333322222222
Q ss_pred HHHHHH--HHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc
Q 000755 529 VFWGAP--TFVSVATFGACMLLGIPLESGKILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIASFLCLDDLQSDVVE 606 (1300)
Q Consensus 529 ~~~~~p--~~v~~~~f~~~~~~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~ 606 (1300)
+..... ..+.++.++.+.+.++.++.|.+.+++.+...+..|+..++..+..+.+++++.+|+.++++.++..+....
T Consensus 243 ~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~ 322 (529)
T TIGR02868 243 AQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGVV 322 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCC
Confidence 222222 223344567777788899999999999999999999999999999999999999999999976653221111
Q ss_pred CC--CCCCCcceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC----
Q 000755 607 KH--PRGSSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG---- 680 (1300)
Q Consensus 607 ~~--~~~~~~~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g---- 680 (1300)
.. +.......|+++|++|+|++ ++++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|
T Consensus 323 ~~~~~~~~~~~~I~~~~vsf~Y~~--~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~ 400 (529)
T TIGR02868 323 PAAGALGLGKPTLELRDLSFGYPG--SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVS 400 (529)
T ss_pred CCCcccCCCCceEEEEEEEEecCC--CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhh
Confidence 00 01112346999999999973 24799999999999999999999999999999999999999999999998
Q ss_pred --------eEEEEecCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHH
Q 000755 681 --------TKAYVAQSPWIQSGNIEDNILFGKP-MDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQ 751 (1300)
Q Consensus 681 --------~~ayv~Q~~~l~~~Ti~eNI~fg~~-~~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRia 751 (1300)
.++||||+|++|++||+|||.+|.| .++++++++++.|+++++++.+|+|++|.+||+|.+|||||||||+
T Consensus 401 ~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRia 480 (529)
T TIGR02868 401 SLQDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLA 480 (529)
T ss_pred hHHHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHH
Confidence 6899999999999999999999976 6899999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCC
Q 000755 752 IARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQV 801 (1300)
Q Consensus 752 LARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~ 801 (1300)
||||++++|+|+||||||||||+++++.|.+. +....+++|+|+||||+
T Consensus 481 iARall~~~~iliLDE~TSaLD~~te~~I~~~-l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 481 LARALLADAPILLLDEPTEHLDAGTESELLED-LLAALSGKTVVVITHHL 529 (529)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHHhcCCCEEEEEecCC
Confidence 99999999999999999999999999999765 45666899999999985
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-70 Score=670.53 Aligned_cols=436 Identities=21% Similarity=0.342 Sum_probs=339.0
Q ss_pred eEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC--------------e
Q 000755 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--------------T 681 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g--------------~ 681 (1300)
.++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 5 ~l~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 5 YISMAGIGKSFG---PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred eEEEeeeEEEcC---CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 489999999995 35799999999999999999999999999999999999999999999876 2
Q ss_pred EEEEecCCcCCC-CCHHHHHhcCCC----------CCH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHH
Q 000755 682 KAYVAQSPWIQS-GNIEDNILFGKP----------MDR----EKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQ 746 (1300)
Q Consensus 682 ~ayv~Q~~~l~~-~Ti~eNI~fg~~----------~~~----~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQ 746 (1300)
++||+|++.++. .|++||+.++.. .+. ++..++++.+++. ........+|||||
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LSgG~ 150 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLK-----------VDLDEKVANLSISH 150 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCC-----------CCcccchhhCCHHH
Confidence 799999987765 599999987632 011 1223333333332 22345667899999
Q ss_pred HHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhh-cCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecCh
Q 000755 747 KQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LRSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKY 824 (1300)
Q Consensus 747 kqRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~-l~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 824 (1300)
|||++|||||+.+|+++||||||++||+.+...+.+ .+..+ .+++|+|+|||+++++.. ||+|++|++|++++.|++
T Consensus 151 ~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~ 229 (510)
T PRK09700 151 KQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFL-IMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMV 229 (510)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecch
Confidence 999999999999999999999999999999988875 44443 347999999999999875 999999999999998887
Q ss_pred HHHHhcCchHHHHHHHHHHHhhhhcccCCCCccccccccccCCCccccccccccCccccccccchhhhhhhHHHHHHHHH
Q 000755 825 NDILNSGTDFMVLVGAHQQALSALDSIEGGPVSERISMNKENGGMDTTNGVTMKEGNEDIQTDKVDEQYYIPSARELSRL 904 (1300)
Q Consensus 825 ~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~~lp~grnr~s~D~v~~~~y~~~~r~l~rl 904 (1300)
+++... ...
T Consensus 230 ~~~~~~-----~~~------------------------------------------------------------------ 238 (510)
T PRK09700 230 SDVSND-----DIV------------------------------------------------------------------ 238 (510)
T ss_pred hhCCHH-----HHH------------------------------------------------------------------
Confidence 664210 000
Q ss_pred HhhhhhhHHHHHHHHhhchHHHHHhcchHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000755 905 VGVCKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFHIAGAMEWLCFRLDMLSSLTFAFSLVLLISIPK 984 (1300)
Q Consensus 905 ~~~~~sp~~~~~~E~l~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~~~~~~ 984 (1300)
+.+ ++.
T Consensus 239 -------------~~~--------~~~----------------------------------------------------- 244 (510)
T PRK09700 239 -------------RLM--------VGR----------------------------------------------------- 244 (510)
T ss_pred -------------HHh--------cCC-----------------------------------------------------
Confidence 000 000
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccCCCCCCCCCCceEEEEeeeeee
Q 000755 985 GVIEPAIAGLAVTYGLNLNMLQAWVIWNLCNLENKIISVERILQYTCISSEPPLVIEESRPDCSWPTHGEVDILNLQVRY 1064 (1300)
Q Consensus 985 g~~~~~~~gl~l~~~~~~~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~i~~~~v~~~y 1064 (1300)
... .+ + +...+ ...++ +....++++|+++.|
T Consensus 245 -~~~-----------------------------------~~---~---~~~~~----~~~~~---~~~~~l~~~~l~~~~ 275 (510)
T PRK09700 245 -ELQ-----------------------------------NR---F---NAMKE----NVSNL---AHETVFEVRNVTSRD 275 (510)
T ss_pred -Ccc-----------------------------------cc---c---ccccc----ccccC---CCCcEEEEeCccccC
Confidence 000 00 0 00000 00000 112369999999876
Q ss_pred CCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCH-HHHhcccEEEcCCC---C
Q 000755 1065 APHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGL-HDLRSRLSIIPQDP---T 1140 (1300)
Q Consensus 1065 ~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~-~~lr~~i~~vpQ~~---~ 1140 (1300)
. .+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|++++|+||++ .
T Consensus 276 ~----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 351 (510)
T PRK09700 276 R----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNG 351 (510)
T ss_pred C----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCC
Confidence 3 28999999999999999999999999999999999999999999999999865543 35677899999984 5
Q ss_pred CCcc-cHHHhcCCCCC------------CC----HHHHHHHHHHcCCc-HHHHhhcCCCccccccCCCCCChhHHHHHHH
Q 000755 1141 MFEG-TVRNNLDPLEE------------YK----DEEIWEALDKCQLG-DEVRNKEGKLDSRVTENGENWSMGQRQLVCL 1202 (1300)
Q Consensus 1141 lf~g-Tvr~Nl~~~~~------------~~----d~~i~~~l~~~~l~-~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~L 1202 (1300)
+|+. |+++|+..... .. .+++.++++++++. +. . ......||||||||++|
T Consensus 352 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~----~~~~~~LSgGq~qrv~l 420 (510)
T PRK09700 352 FFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHS-------V----NQNITELSGGNQQKVLI 420 (510)
T ss_pred CcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCC-------c----cCccccCChHHHHHHHH
Confidence 6765 99999864211 01 12355667777663 22 2 22345699999999999
Q ss_pred HHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhh
Q 000755 1203 GRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTK 1275 (1300)
Q Consensus 1203 ARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~ 1275 (1300)
||||+.+|+||||||||++||+.+.+.+.+.|++.. ++.|||+|||+++.+.. ||||++|++|++++.+++.+
T Consensus 421 Aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~ 495 (510)
T PRK09700 421 SKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTNRD 495 (510)
T ss_pred HHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecCcc
Confidence 999999999999999999999999999999998764 47899999999999887 99999999999999887633
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-66 Score=651.27 Aligned_cols=538 Identities=24% Similarity=0.343 Sum_probs=422.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 293 ALFFSAWKEIVFTAILALLYTLANYVGPYLIDTFVQYLNGEREFKNEGYVLVSTFFVAKIVECLAQRHWMFRLQVAGIKM 372 (1300)
Q Consensus 293 ~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~g~~i 372 (1300)
.+++ ++ .++...++.++..++....|+++..+++.+... ......+...+++..++..+......+.....+.++
T Consensus 9 ~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 83 (567)
T COG1132 9 KYLK-YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLAD---LGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKI 83 (567)
T ss_pred HHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 67 788888888999999999999999999987611 111111222222222234444444555566667889
Q ss_pred HHHHHHHHHHHHhcCCchhhcCCCHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 000755 373 RSVLVSMVYNKGLTLSCQAKQSYTSGEIINFMTVDAERIGDFGWYMHDPWL-VILQVSLALLILYK-NLGLASIAALFAT 450 (1300)
Q Consensus 373 r~~L~~~Iy~K~L~ls~~~~~~~~~G~Ivnl~s~Dv~~i~~~~~~~~~~~~-~~l~i~~~l~lL~~-~lg~~~l~~l~~~ 450 (1300)
...++..+|+|.++++...++++++|++++++++|++.+..++.....+.. .++.++..+++++. .+-++ ++.+++.
T Consensus 84 ~~~lr~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-l~~~~~~ 162 (567)
T COG1132 84 VADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLA-LILLLIL 162 (567)
T ss_pred HHHHHHHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHH
Confidence 999999999999999999999999999999999999999998766533333 33333333333332 23233 3333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 000755 451 VLIMLTNFPLGRLQENFQDKLMGSKDKRMKVTSEILRNMRILKLQGWEMKFLSKIIELRKIEAGWL-KKFLYTGAMTSFV 529 (1300)
Q Consensus 451 ~l~~~~~~~~~k~~~~~~~~~~~~~d~r~~~~~E~L~~ir~IK~~~~E~~f~~~i~~~R~~E~~~l-~~~~~~~~~~~~~ 529 (1300)
+++..+...+.++.++...+..+..++..+.+.|.++|+++||.|+.|+...++..+..+...+.. +............
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (567)
T COG1132 163 PLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLM 242 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455565567888888888899999999999999999999999977666554433222221 1111111111111
Q ss_pred H-HHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCC
Q 000755 530 F-WGAPTFVSVATFGACMLLGIPLESGKILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIASFLCLDDLQSDVVEKH 608 (1300)
Q Consensus 530 ~-~~~p~~v~~~~f~~~~~~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~~ 608 (1300)
. ...-..+.++.++.+.+..+.++.|.+.+++.++..+..|+..+...+..+.++..|.+|+.++++.++...+....
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~- 321 (567)
T COG1132 243 LLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDP- 321 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCC-
Confidence 1 12222344455666777788899999999999999999999999999999999999999999999875532221111
Q ss_pred CCCCCcceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe-------
Q 000755 609 PRGSSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------- 681 (1300)
Q Consensus 609 ~~~~~~~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~------- 681 (1300)
.......|+++|++|+|++ ++++|+|+||++++||++|||||+|||||||+++|+|+++|++|+|.+||.
T Consensus 322 -~~~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~ 398 (567)
T COG1132 322 -LKDTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISL 398 (567)
T ss_pred -CCCCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCH
Confidence 1223456999999999974 468999999999999999999999999999999999999999999999883
Q ss_pred ------EEEEecCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHHH
Q 000755 682 ------KAYVAQSPWIQSGNIEDNILFGKP-MDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIAR 754 (1300)
Q Consensus 682 ------~ayv~Q~~~l~~~Ti~eNI~fg~~-~~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLAR 754 (1300)
++||+|+|++|++||+|||.+|+| .++|+..++++.++++++++.+|+|++|.+||+|.+|||||||||+|||
T Consensus 399 ~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiAR 478 (567)
T COG1132 399 DSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIAR 478 (567)
T ss_pred HHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHH
Confidence 699999999999999999999998 6999999999999999999999999999999999999999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHhcCchH
Q 000755 755 ALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSGTDF 834 (1300)
Q Consensus 755 Aly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 834 (1300)
|+++||+|++||||||+||+++++.|.+. +..+.++||+|+|+||++.+..||+|+||++|+|++.|+|+||++.++.|
T Consensus 479 all~~~~ILILDEaTSalD~~tE~~I~~~-l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~~g~y 557 (567)
T COG1132 479 ALLRNPPILILDEATSALDTETEALIQDA-LKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAKGGLY 557 (567)
T ss_pred HHhcCCCEEEEeccccccCHHhHHHHHHH-HHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHcCCHH
Confidence 99999999999999999999999988654 55566889999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 000755 835 MVLVGAH 841 (1300)
Q Consensus 835 ~~l~~~~ 841 (1300)
.+++..+
T Consensus 558 ~~l~~~~ 564 (567)
T COG1132 558 ARLYQAQ 564 (567)
T ss_pred HHHHHHh
Confidence 9887654
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-66 Score=663.88 Aligned_cols=546 Identities=21% Similarity=0.244 Sum_probs=440.2
Q ss_pred chhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 288 FKLTKALFFSAWKEIVFTAILALLYTLANYVGPYLIDTFVQYLNGEREFKNEGYVLVSTFFVAKIVECLAQRHWMFRLQV 367 (1300)
Q Consensus 288 ~~l~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~ 367 (1300)
.+.++..++.+++.+....++.++..++.++.|++++.++|.+-.... ....+.+++++++..++..++.....+...+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~-~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~ 205 (694)
T TIGR01846 127 FSWFIPAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHRG-LSTLSVLALAMLAVAIFEPALGGLRTYLFAH 205 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555667788888888899999999999999999999997753222 1222334444555555666777777777888
Q ss_pred HHHHHHHHHHHHHHHHHhcCCchhhcCCCHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 000755 368 AGIKMRSVLVSMVYNKGLTLSCQAKQSYTSGEIINFMTVDAERIGDFGW-YMHDPWLVILQVSLALL-ILYKNLGLASIA 445 (1300)
Q Consensus 368 ~g~~ir~~L~~~Iy~K~L~ls~~~~~~~~~G~Ivnl~s~Dv~~i~~~~~-~~~~~~~~~l~i~~~l~-lL~~~lg~~~l~ 445 (1300)
++.++...++..+|+|.++++...+++.++|++++++ +|++.+.+++. .+.......+.+++.++ +++..+.+ +++
T Consensus 206 ~~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l-~li 283 (694)
T TIGR01846 206 LTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTL-TGV 283 (694)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 9999999999999999999999999999999999999 69999998753 23333333333333333 33433333 344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 446 ALFATVLIMLTNFPLGRLQENFQDKLMGSKDKRMKVTSEILRNMRILKLQGWEMKFLSKIIELRKIEAGWLKKFLYTGAM 525 (1300)
Q Consensus 446 ~l~~~~l~~~~~~~~~k~~~~~~~~~~~~~d~r~~~~~E~L~~ir~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~~~~~ 525 (1300)
.++++++..++..++.+..++..++.++..+++.+.+.|.++|+++||.++.|+.+.+++.+..+...+...+.......
T Consensus 284 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (694)
T TIGR01846 284 VIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNI 363 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555556666777778888888889999999999999999999999999999988876544433333332222222
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Q 000755 526 TSFVFWGA--PTFVSVATFGACMLLGIPLESGKILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIASFLCLDDLQSD 603 (1300)
Q Consensus 526 ~~~~~~~~--p~~v~~~~f~~~~~~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~ 603 (1300)
........ ...+.++.+|++.+..+.+|.|.++++..+...+..|+..+...+..+.+++++++|+.++++.++..+.
T Consensus 364 ~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~ 443 (694)
T TIGR01846 364 AGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRS 443 (694)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccC
Confidence 22211111 1223456678888888999999999999999999999999999999999999999999999987654322
Q ss_pred cccCCCCCCCcceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe--
Q 000755 604 VVEKHPRGSSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-- 681 (1300)
Q Consensus 604 ~~~~~~~~~~~~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-- 681 (1300)
. ...+.......|+++|++|+|+++ ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 444 ~-~~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i 521 (694)
T TIGR01846 444 A-GLAALPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDL 521 (694)
T ss_pred C-CCCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeh
Confidence 1 111111224579999999999743 457999999999999999999999999999999999999999999999984
Q ss_pred -----------EEEEecCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHH
Q 000755 682 -----------KAYVAQSPWIQSGNIEDNILFGKP-MDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQR 749 (1300)
Q Consensus 682 -----------~ayv~Q~~~l~~~Ti~eNI~fg~~-~~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqR 749 (1300)
++||+|+|++|++||+|||.++.+ .++++..++++.++++++++.+|+|++|.+||+|.+||||||||
T Consensus 522 ~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qr 601 (694)
T TIGR01846 522 AIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQR 601 (694)
T ss_pred hhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHH
Confidence 599999999999999999999876 68899999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHh
Q 000755 750 IQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILN 829 (1300)
Q Consensus 750 iaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 829 (1300)
|+||||++++|+|+|||||||+||+++++.+.+. +....+++|+|+||||++.++.||+|++|++|+|++.|+++++++
T Consensus 602 i~lARall~~~~ililDEpts~LD~~~~~~i~~~-l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~ 680 (694)
T TIGR01846 602 IAIARALVGNPRILIFDEATSALDYESEALIMRN-MREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLA 680 (694)
T ss_pred HHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHH-HHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 9999999999999999999999999999998764 555567899999999999999999999999999999999999999
Q ss_pred cCchHHHHHH
Q 000755 830 SGTDFMVLVG 839 (1300)
Q Consensus 830 ~~~~~~~l~~ 839 (1300)
.++.|.++..
T Consensus 681 ~~~~y~~l~~ 690 (694)
T TIGR01846 681 LQGLYARLWQ 690 (694)
T ss_pred cCChHHHHHH
Confidence 8888888764
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-66 Score=650.02 Aligned_cols=540 Identities=19% Similarity=0.261 Sum_probs=422.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 293 ALFFSAWKEIVFTAILALLYTLANYVGPYLIDTFVQYLNGEREFKNEGYVLVSTFFVAKIVECLAQRHWMFRLQVAGIKM 372 (1300)
Q Consensus 293 ~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~g~~i 372 (1300)
.+++.+++.+.+.+++.++..++.++.|+++..++|.+..... .. .+++.+++..++..+......+...++..++
T Consensus 12 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (588)
T PRK13657 12 QYLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGKGD---IF-PLLAAWAGFGLFNIIAGVLVARHADRLAHRR 87 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888888889999999999999999999998764321 11 1111112222223333333445567778888
Q ss_pred HHHHHHHHHHHHhcCCchhhcCCCHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 373 RSVLVSMVYNKGLTLSCQAKQSYTSGEIINFMTVDAERIGDFGW-YMHDPWLVILQVSLALLILYKNLGLASIAALFATV 451 (1300)
Q Consensus 373 r~~L~~~Iy~K~L~ls~~~~~~~~~G~Ivnl~s~Dv~~i~~~~~-~~~~~~~~~l~i~~~l~lL~~~lg~~~l~~l~~~~ 451 (1300)
+..++..+|+|.++++...+.+.+.|++++++++|++.+.+... .+.......+..++.+++++..-.+.+++.+++++
T Consensus 88 ~~~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~ 167 (588)
T PRK13657 88 RLAVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVLGI 167 (588)
T ss_pred HHHHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999976533 22233322222222222222222222333344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 000755 452 LIMLTNFPLGRLQENFQDKLMGSKDKRMKVTSEILRNMRILKLQGWEMKFLSKIIELRKI----EAGWLKKFLYTGAMTS 527 (1300)
Q Consensus 452 l~~~~~~~~~k~~~~~~~~~~~~~d~r~~~~~E~L~~ir~IK~~~~E~~f~~~i~~~R~~----E~~~l~~~~~~~~~~~ 527 (1300)
+...+...+.++.++.+++.++..++..+...|.++|+++||.|+.|+.+.+++.+.-+. +.+..+.......+..
T Consensus 168 l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (588)
T PRK13657 168 VYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNR 247 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677788888888889999999999999999999999999999888777554332 2222211111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccC
Q 000755 528 FVFWGAPTFVSVATFGACMLLGIPLESGKILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIASFLCLDDLQSDVVEK 607 (1300)
Q Consensus 528 ~~~~~~p~~v~~~~f~~~~~~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~ 607 (1300)
.......+.+++++++.+..+.+|.|.+++++.++..+..|+..+...+..+.+++.+++|+.++++.++..+.....
T Consensus 248 --~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~ 325 (588)
T PRK13657 248 --AASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPGA 325 (588)
T ss_pred --HHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCC
Confidence 112223345567788888899999999999999999999999999999999999999999999998765432211111
Q ss_pred CCCCCCcceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC-------
Q 000755 608 HPRGSSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG------- 680 (1300)
Q Consensus 608 ~~~~~~~~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g------- 680 (1300)
.+.......|+++|++|+|+. ++++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 326 ~~~~~~~~~I~~~~vsf~y~~--~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~ 403 (588)
T PRK13657 326 IDLGRVKGAVEFDDVSFSYDN--SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVT 403 (588)
T ss_pred CCcCCCCCeEEEEEEEEEeCC--CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCC
Confidence 111112346999999999973 35799999999999999999999999999999999999999999999998
Q ss_pred ------eEEEEecCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHH
Q 000755 681 ------TKAYVAQSPWIQSGNIEDNILFGKP-MDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIA 753 (1300)
Q Consensus 681 ------~~ayv~Q~~~l~~~Ti~eNI~fg~~-~~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLA 753 (1300)
.++||||+|++|++||+|||.+++| .++++.+++++.++++++++.+|+|++|.+|++|.+|||||||||+||
T Consensus 404 ~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialA 483 (588)
T PRK13657 404 RASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIA 483 (588)
T ss_pred HHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHH
Confidence 4699999999999999999999975 678999999999999999999999999999999999999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHhcCch
Q 000755 754 RALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSGTD 833 (1300)
Q Consensus 754 RAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~ 833 (1300)
||++++|+|++||||||+||+++++.+++. +....+++|+|+||||++.++.||+|++|++|++++.|+++++++..+.
T Consensus 484 Rall~~~~iliLDEpts~LD~~t~~~i~~~-l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~~~~ 562 (588)
T PRK13657 484 RALLKDPPILILDEATSALDVETEAKVKAA-LDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVARGGR 562 (588)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHH-HHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHCCCh
Confidence 999999999999999999999999999764 4555578999999999999999999999999999999999999988888
Q ss_pred HHHHHHHH
Q 000755 834 FMVLVGAH 841 (1300)
Q Consensus 834 ~~~l~~~~ 841 (1300)
|.++....
T Consensus 563 y~~l~~~~ 570 (588)
T PRK13657 563 FAALLRAQ 570 (588)
T ss_pred HHHHHHHh
Confidence 88877543
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-69 Score=666.16 Aligned_cols=437 Identities=23% Similarity=0.381 Sum_probs=342.0
Q ss_pred EEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccc--cCCccEEEEc---------------
Q 000755 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEV--PKISGTLKLC--------------- 679 (1300)
Q Consensus 617 I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~--~~~~G~i~~~--------------- 679 (1300)
|+++|++++|+ ++++|+|+||++.+|++++|+|+||||||||+++|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFD---GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEEC---CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 46899999995 357999999999999999999999999999999999997 7999999885
Q ss_pred --------C-----------------------eEEEEecC-CcCCC-CCHHHHHhcCCC---CC----HHHHHHHHHHhc
Q 000755 680 --------G-----------------------TKAYVAQS-PWIQS-GNIEDNILFGKP---MD----REKYDRVLEACS 719 (1300)
Q Consensus 680 --------g-----------------------~~ayv~Q~-~~l~~-~Ti~eNI~fg~~---~~----~~~~~~vl~~~~ 719 (1300)
| .++|++|+ +.++. .|++||+.|+.. .+ .++..++++.++
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g 157 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQ 157 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 1 26999997 55554 699999987531 22 234445566665
Q ss_pred chHHHhhccCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc--CCcEEEEE
Q 000755 720 LKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL--RSKTVIYV 797 (1300)
Q Consensus 720 l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l--~~~TvIlv 797 (1300)
+.... .....+||||||||++|||||+.+|+++||||||++||+++.+.+.+ .+..+. .++|||+|
T Consensus 158 l~~~~-----------~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~~g~tviiv 225 (520)
T TIGR03269 158 LSHRI-----------THIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHN-ALEEAVKASGISMVLT 225 (520)
T ss_pred Chhhh-----------hcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHH-HHHHHHHhcCcEEEEE
Confidence 54322 34567899999999999999999999999999999999999998875 454443 37899999
Q ss_pred ecCCCcccc-CCEEEEEeCCeEEEecChHHHHhcCchHHHHHHHHHHHhhhhcccCCCCccccccccccCCCcccccccc
Q 000755 798 THQVEFLPA-ADLILVMKDGKITQAGKYNDILNSGTDFMVLVGAHQQALSALDSIEGGPVSERISMNKENGGMDTTNGVT 876 (1300)
Q Consensus 798 tH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~~ 876 (1300)
||+++++.. ||+|++|++|+++..|+++++... .
T Consensus 226 tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~------~--------------------------------------- 260 (520)
T TIGR03269 226 SHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAV------F--------------------------------------- 260 (520)
T ss_pred eCCHHHHHHhcCEEEEEeCCEEeeecCHHHHHHH------H---------------------------------------
Confidence 999999875 999999999999988877654210 0
Q ss_pred ccCccccccccchhhhhhhHHHHHHHHHHhhhhhhHHHHHHHHhhchHHHHHhcchHHHHHHHHHHHHhhcchHHHHHHH
Q 000755 877 MKEGNEDIQTDKVDEQYYIPSARELSRLVGVCKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFHIAGA 956 (1300)
Q Consensus 877 lp~grnr~s~D~v~~~~y~~~~r~l~rl~~~~~sp~~~~~~E~l~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~ 956 (1300)
.+.
T Consensus 261 ----------------------------------------~~~------------------------------------- 263 (520)
T TIGR03269 261 ----------------------------------------MEG------------------------------------- 263 (520)
T ss_pred ----------------------------------------Hhh-------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 000755 957 MEWLCFRLDMLSSLTFAFSLVLLISIPKGVIEPAIAGLAVTYGLNLNMLQAWVIWNLCNLENKIISVERILQYTCISSEP 1036 (1300)
Q Consensus 957 ~~wl~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~gl~l~~~~~~~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~ 1036 (1300)
. .++.. + .+
T Consensus 264 ------------------------------~------------------------------------~~~~~----~-~~ 272 (520)
T TIGR03269 264 ------------------------------V------------------------------------SEVEK----E-CE 272 (520)
T ss_pred ------------------------------c------------------------------------hhhcc----c-cc
Confidence 0 00000 0 00
Q ss_pred CCccccCCCCCCCCCCceEEEEeeeeeeCC---CCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceE
Q 000755 1037 PLVIEESRPDCSWPTHGEVDILNLQVRYAP---HLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEI 1113 (1300)
Q Consensus 1037 ~~~~~~~~~~~~wp~~g~i~~~~v~~~y~~---~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I 1113 (1300)
.+ +....++++|++++|+. +..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|
T Consensus 273 -------~~----~~~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i 341 (520)
T TIGR03269 273 -------VE----VGEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEV 341 (520)
T ss_pred -------cC----CCCceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE
Confidence 00 01236999999999953 22469999999999999999999999999999999999999999999
Q ss_pred EEC-Ce---ecCCCC---HHHHhcccEEEcCCCCCCcc-cHHHhcCCC-C-CC----CHHHHHHHHHHcCCcHHHHhhcC
Q 000755 1114 VID-GI---NISSIG---LHDLRSRLSIIPQDPTMFEG-TVRNNLDPL-E-EY----KDEEIWEALDKCQLGDEVRNKEG 1179 (1300)
Q Consensus 1114 ~id-g~---di~~i~---~~~lr~~i~~vpQ~~~lf~g-Tvr~Nl~~~-~-~~----~d~~i~~~l~~~~l~~~i~~~~~ 1179 (1300)
.++ |. ++...+ ...+|++++|+||++.+|.. |+++|+... . .. .++++.++++.+++.+.-
T Consensus 342 ~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----- 416 (520)
T TIGR03269 342 NVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEK----- 416 (520)
T ss_pred EEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCcc-----
Confidence 996 64 333332 23456789999999988875 999998531 1 11 123466778888875310
Q ss_pred CCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhc-c
Q 000755 1180 KLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVID-S 1256 (1300)
Q Consensus 1180 gLdt~v~e~G~~LSgGqrQrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~-~ 1256 (1300)
.+.........||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|++..+ +.|||+|||+++.+.. |
T Consensus 417 -~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~ 495 (520)
T TIGR03269 417 -AEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVC 495 (520)
T ss_pred -chhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhC
Confidence 00001223457899999999999999999999999999999999999999999988642 6899999999999987 9
Q ss_pred CEEEEEeCCEEEEecChhhHHh
Q 000755 1257 DMVLLLSHGIIEEYDSPTKLLE 1278 (1300)
Q Consensus 1257 D~v~vl~~G~i~e~g~~~~l~~ 1278 (1300)
|||++|++|++++.|+++++.+
T Consensus 496 d~i~~l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 496 DRAALMRDGKIVKIGDPEEIVE 517 (520)
T ss_pred CEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999988764
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-69 Score=662.24 Aligned_cols=445 Identities=22% Similarity=0.352 Sum_probs=344.4
Q ss_pred eEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC--------------e
Q 000755 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--------------T 681 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g--------------~ 681 (1300)
.++++|++++|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 11 ~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 11 LLCARSISKQYS---GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred eEEEEeEEEEeC---CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 599999999996 35799999999999999999999999999999999999999999999987 2
Q ss_pred EEEEecCCcCCC-CCHHHHHhcCCCCC---HHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHHHHHc
Q 000755 682 KAYVAQSPWIQS-GNIEDNILFGKPMD---REKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALY 757 (1300)
Q Consensus 682 ~ayv~Q~~~l~~-~Ti~eNI~fg~~~~---~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLARAly 757 (1300)
++|++|++.++. .|++||+.|+.... +++..++++..++.. .......+||||||||++|||||+
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~~qrv~la~aL~ 156 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQL-----------DLDSSAGSLEVADRQIVEILRGLM 156 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCc-----------cccCChhhCCHHHHHHHHHHHHHH
Confidence 789999998765 59999999875422 234444555554432 234556789999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHhh-cCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHHHhcCchHH
Q 000755 758 QDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LRSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDILNSGTDFM 835 (1300)
Q Consensus 758 ~~~~illLDep~saLD~~t~~~i~~~~~~~~-l~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 835 (1300)
.+|+++||||||++||+.+...+.+. +..+ .+++|+|++||+++.+.. ||+|++|++|++++.|+++++....
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~---- 231 (510)
T PRK15439 157 RDSRILILDEPTASLTPAETERLFSR-IRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTDD---- 231 (510)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCHHH----
Confidence 99999999999999999999988764 4443 347899999999998865 9999999999999999887753210
Q ss_pred HHHHHHHHHhhhhcccCCCCccccccccccCCCccccccccccCccccccccchhhhhhhHHHHHHHHHHhhhhhhHHHH
Q 000755 836 VLVGAHQQALSALDSIEGGPVSERISMNKENGGMDTTNGVTMKEGNEDIQTDKVDEQYYIPSARELSRLVGVCKAPVIQH 915 (1300)
Q Consensus 836 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~~lp~grnr~s~D~v~~~~y~~~~r~l~rl~~~~~sp~~~~ 915 (1300)
.... .
T Consensus 232 -~~~~---------------------------------------------------------------~----------- 236 (510)
T PRK15439 232 -IIQA---------------------------------------------------------------I----------- 236 (510)
T ss_pred -HHHH---------------------------------------------------------------H-----------
Confidence 0000 0
Q ss_pred HHHHhhchHHHHHhcchHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Q 000755 916 FSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFHIAGAMEWLCFRLDMLSSLTFAFSLVLLISIPKGVIEPAIAGLA 995 (1300)
Q Consensus 916 ~~E~l~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~gl~ 995 (1300)
++.. ...+ .
T Consensus 237 -------------~~~~------------~~~~--------------------------------------~-------- 245 (510)
T PRK15439 237 -------------TPAA------------REKS--------------------------------------L-------- 245 (510)
T ss_pred -------------hCcc------------cccc--------------------------------------c--------
Confidence 0000 0000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccCCCCCCCCCCceEEEEeeeeeeCCCCCcceeee
Q 000755 996 VTYGLNLNMLQAWVIWNLCNLENKIISVERILQYTCISSEPPLVIEESRPDCSWPTHGEVDILNLQVRYAPHLPLVLRGL 1075 (1300)
Q Consensus 996 l~~~~~~~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~i~~~~v~~~y~~~~~~vL~~i 1075 (1300)
.+.++. .+ ..|...+ .++ +....++++|++. .+|+|+
T Consensus 246 -------------------------~~~~~~-~~-~~~~~~~------~~~---~~~~~l~~~~l~~-------~~l~~i 282 (510)
T PRK15439 246 -------------------------SASQKL-WL-ELPGNRR------QQA---AGAPVLTVEDLTG-------EGFRNI 282 (510)
T ss_pred -------------------------cccccc-cc-ccccccc------ccC---CCCceEEEeCCCC-------CCccce
Confidence 000000 00 0000000 000 1123589999983 169999
Q ss_pred eEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHH-HhcccEEEcCCC---CCCcc-cHHHhc
Q 000755 1076 TCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHD-LRSRLSIIPQDP---TMFEG-TVRNNL 1150 (1300)
Q Consensus 1076 sl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~-lr~~i~~vpQ~~---~lf~g-Tvr~Nl 1150 (1300)
||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... .|.+++|+||++ .+|.. |+.+|+
T Consensus 283 sl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l 362 (510)
T PRK15439 283 SLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNV 362 (510)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHH
Confidence 9999999999999999999999999999999999999999999998776554 456899999986 36654 999997
Q ss_pred CCC-----CC--CC---HHHHHHHHHHcCCc-HHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEeCCC
Q 000755 1151 DPL-----EE--YK---DEEIWEALDKCQLG-DEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEAT 1219 (1300)
Q Consensus 1151 ~~~-----~~--~~---d~~i~~~l~~~~l~-~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~~iLlLDEpT 1219 (1300)
... .. .. ++++.++++.+++. +. .......||||||||++|||||+.+|+||||||||
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt 431 (510)
T PRK15439 363 CALTHNRRGFWIKPARENAVLERYRRALNIKFNH-----------AEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPT 431 (510)
T ss_pred HhhhhhhhccccChHHHHHHHHHHHHHcCCCCCC-----------ccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCC
Confidence 421 00 01 12355667776653 21 22334679999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHHhc
Q 000755 1220 ASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLEN 1279 (1300)
Q Consensus 1220 s~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~~~ 1279 (1300)
++||+.+.+.+.+.|++.. +++|||+|||+++.+.+ ||+|++|++|+++..|+++++.++
T Consensus 432 ~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~~ 493 (510)
T PRK15439 432 RGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAINVD 493 (510)
T ss_pred cCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCCHH
Confidence 9999999999999998864 47899999999999987 999999999999999999887643
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-69 Score=661.92 Aligned_cols=431 Identities=22% Similarity=0.362 Sum_probs=337.9
Q ss_pred eEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC--------------e
Q 000755 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--------------T 681 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g--------------~ 681 (1300)
.|+++|++++|+ +.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 4 ~i~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 4 LLQLKGIDKAFP---GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred eEEEeeeEEEeC---CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 489999999995 35799999999999999999999999999999999999999999999986 2
Q ss_pred EEEEecCCcCCC-CCHHHHHhcCCC-------CCHH----HHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHH
Q 000755 682 KAYVAQSPWIQS-GNIEDNILFGKP-------MDRE----KYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQR 749 (1300)
Q Consensus 682 ~ayv~Q~~~l~~-~Ti~eNI~fg~~-------~~~~----~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqR 749 (1300)
++|++|++.++. .|++||+.|+.. .+.+ +..++++.+++. ........+||||||||
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgG~~qr 149 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLR-----------FSSDKLVGELSIGEQQM 149 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCC-----------CCccCchhhCCHHHHHH
Confidence 699999987764 599999998743 1222 223333333332 22345567899999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhh-cCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHH
Q 000755 750 IQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LRSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDI 827 (1300)
Q Consensus 750 iaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~-l~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 827 (1300)
++|||||..+|+++||||||++||+.+...+.+ .+..+ ..++|+|++||+++.+.. ||+|++|++|++++.|+.+++
T Consensus 150 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 150 VEIAKVLSFESKVIIMDEPTDALTDTETESLFR-VIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADL 228 (501)
T ss_pred HHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcC
Confidence 999999999999999999999999999988875 44433 347899999999999865 999999999999987765432
Q ss_pred HhcCchHHHHHHHHHHHhhhhcccCCCCccccccccccCCCccccccccccCccccccccchhhhhhhHHHHHHHHHHhh
Q 000755 828 LNSGTDFMVLVGAHQQALSALDSIEGGPVSERISMNKENGGMDTTNGVTMKEGNEDIQTDKVDEQYYIPSARELSRLVGV 907 (1300)
Q Consensus 828 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~~lp~grnr~s~D~v~~~~y~~~~r~l~rl~~~ 907 (1300)
... ..
T Consensus 229 ~~~-----~~---------------------------------------------------------------------- 233 (501)
T PRK10762 229 TED-----SL---------------------------------------------------------------------- 233 (501)
T ss_pred CHH-----HH----------------------------------------------------------------------
Confidence 100 00
Q ss_pred hhhhHHHHHHHHhhchHHHHHhcchHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 000755 908 CKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFHIAGAMEWLCFRLDMLSSLTFAFSLVLLISIPKGVI 987 (1300)
Q Consensus 908 ~~sp~~~~~~E~l~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~~~~~~g~~ 987 (1300)
.+.. .+.
T Consensus 234 ---------~~~~---------------------------------------------------------------~~~- 240 (501)
T PRK10762 234 ---------IEMM---------------------------------------------------------------VGR- 240 (501)
T ss_pred ---------HHHh---------------------------------------------------------------cCC-
Confidence 0000 000
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccCCCCCCCCCCceEEEEeeeeeeCCC
Q 000755 988 EPAIAGLAVTYGLNLNMLQAWVIWNLCNLENKIISVERILQYTCISSEPPLVIEESRPDCSWPTHGEVDILNLQVRYAPH 1067 (1300)
Q Consensus 988 ~~~~~gl~l~~~~~~~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~i~~~~v~~~y~~~ 1067 (1300)
+ .+...+. ...+ +....++++|+++
T Consensus 241 -------------------------------------~------~~~~~~~----~~~~---~~~~~l~~~~l~~----- 265 (501)
T PRK10762 241 -------------------------------------K------LEDQYPR----LDKA---PGEVRLKVDNLSG----- 265 (501)
T ss_pred -------------------------------------C------ccccccc----cccC---CCCcEEEEeCccc-----
Confidence 0 0000000 0000 1122589999984
Q ss_pred CCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHH-HHhcccEEEcCCC---CCCc
Q 000755 1068 LPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLH-DLRSRLSIIPQDP---TMFE 1143 (1300)
Q Consensus 1068 ~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~-~lr~~i~~vpQ~~---~lf~ 1143 (1300)
.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.. .+|++++|+||++ .+|.
T Consensus 266 --~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~ 343 (501)
T PRK10762 266 --PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVL 343 (501)
T ss_pred --CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcC
Confidence 279999999999999999999999999999999999999999999999998766543 4677899999997 3554
Q ss_pred -ccHHHhcCCCC-----C----CC----HHHHHHHHHHcCCc-HHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHcc
Q 000755 1144 -GTVRNNLDPLE-----E----YK----DEEIWEALDKCQLG-DEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLK 1208 (1300)
Q Consensus 1144 -gTvr~Nl~~~~-----~----~~----d~~i~~~l~~~~l~-~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~ 1208 (1300)
.|+++|+.... . .. ++++.++++.+++. +. .......||||||||++|||||+.
T Consensus 344 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~~LSgGekqrv~lA~al~~ 412 (501)
T PRK10762 344 GMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPS-----------MEQAIGLLSGGNQQKVAIARGLMT 412 (501)
T ss_pred CCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCC-----------ccCchhhCCHHHHHHHHHHHHHhh
Confidence 59999986411 0 11 23456677777663 21 223446799999999999999999
Q ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHH
Q 000755 1209 KSKVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLL 1277 (1300)
Q Consensus 1209 ~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~ 1277 (1300)
+|++|||||||++||+.+.+.+.+.|++.. +++|||++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 413 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 483 (501)
T PRK10762 413 RPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQAT 483 (501)
T ss_pred CCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEeccccCC
Confidence 999999999999999999999999999865 47899999999999987 9999999999999999887764
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-66 Score=650.98 Aligned_cols=543 Identities=22% Similarity=0.289 Sum_probs=428.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 295 FFSAWKEIVFTAILALLYTLANYVGPYLIDTFVQYLNGERE--FKNEGYVLVSTFFVAKIVECLAQRHWMFRLQVAGIKM 372 (1300)
Q Consensus 295 ~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~l~~~~~--~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~g~~i 372 (1300)
.+..|+.++++.+.+++..+..-+..+++..++..+...+. .......+++.+++..++..+......|....+|.++
T Consensus 659 ~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~~q~~~f~~~ge~L 738 (1228)
T KOG0055|consen 659 NKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNFLQHYFFGIAGEKL 738 (1228)
T ss_pred ccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888888888877777777778888776653321 1222223555555555556665555556667889999
Q ss_pred HHHHHHHHHHHHhcCCchhhc--CCCHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 000755 373 RSVLVSMVYNKGLTLSCQAKQ--SYTSGEIINFMTVDAERIGDFGWY-MHDPWLVILQVSLALLI-LYKNLGLASIAALF 448 (1300)
Q Consensus 373 r~~L~~~Iy~K~L~ls~~~~~--~~~~G~Ivnl~s~Dv~~i~~~~~~-~~~~~~~~l~i~~~l~l-L~~~lg~~~l~~l~ 448 (1300)
-..++.+.|+|.++.....++ +++ |.+.+++.+|+..+...... +-.+......+++++.+ +++.|.++ +++++
T Consensus 739 t~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W~la-lv~la 816 (1228)
T KOG0055|consen 739 TKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGWRLA-LVVLA 816 (1228)
T ss_pred HHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 999999999999999887664 456 99999999999998876432 22222222222333322 33444444 45566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 000755 449 ATVLIMLTNFPLGRLQENFQDKLMGSKDKRMKVTSEILRNMRILKLQGWEMKFLSKIIEL-RKIEAGWLKKFLYTGAMTS 527 (1300)
Q Consensus 449 ~~~l~~~~~~~~~k~~~~~~~~~~~~~d~r~~~~~E~L~~ir~IK~~~~E~~f~~~i~~~-R~~E~~~l~~~~~~~~~~~ 527 (1300)
..+++....+...+....+..+.++..++-.+...|++.|||+||.++.|++|.+...+. ++-.....++.... .+..
T Consensus 817 ~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~~i~-gl~f 895 (1228)
T KOG0055|consen 817 TFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRGLIS-GLGF 895 (1228)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 666667777778888899999999999999999999999999999999999988877553 22222223332222 2222
Q ss_pred HHHHHHHHH--HHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCccc
Q 000755 528 FVFWGAPTF--VSVATFGACMLLGIPLESGKILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIASFLCLDD-LQSDV 604 (1300)
Q Consensus 528 ~~~~~~p~~--v~~~~f~~~~~~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e-~~~~~ 604 (1300)
.+..+...+ .....||.+++..+..++..+|..+..+.+-...+.+.....+.+..|+.|..+|.++++.+. .+.+.
T Consensus 896 ~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~ 975 (1228)
T KOG0055|consen 896 GFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDRKPTIDPDS 975 (1228)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcCCCCCCCCC
Confidence 222222222 234567778888889999999888877776666667777777788899999999999998765 22222
Q ss_pred ccCCCCCCCcceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe---
Q 000755 605 VEKHPRGSSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--- 681 (1300)
Q Consensus 605 ~~~~~~~~~~~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~--- 681 (1300)
......+...+.|+++|++|+||..++.++|+|+||+|++|+.+|+||||||||||.+.+|-++|+|++|.|.++|.
T Consensus 976 ~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik 1055 (1228)
T KOG0055|consen 976 TSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIK 1055 (1228)
T ss_pred CCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccc
Confidence 11111223457899999999999888899999999999999999999999999999999999999999999999984
Q ss_pred ----------EEEEecCCcCCCCCHHHHHhcCC-CCCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHH
Q 000755 682 ----------KAYVAQSPWIQSGNIEDNILFGK-PMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRI 750 (1300)
Q Consensus 682 ----------~ayv~Q~~~l~~~Ti~eNI~fg~-~~~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRi 750 (1300)
+|.|+|+|.||++||||||++|. ..+++++.++++.+..++++..||+|++|.+||+|.+|||||||||
T Consensus 1056 ~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRI 1135 (1228)
T KOG0055|consen 1056 DLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRI 1135 (1228)
T ss_pred cCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHH
Confidence 59999999999999999999993 4699999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHhc
Q 000755 751 QIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNS 830 (1300)
Q Consensus 751 aLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 830 (1300)
|||||+.+||+||||||+|||||.++++ +.++.+.....|+|+|+|+||++.+.+||.|.|++||+|+|+|+|++|++.
T Consensus 1136 AIARAilRnPkILLLDEATSALDseSEr-vVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~GtH~~L~~~ 1214 (1228)
T KOG0055|consen 1136 AIARAILRNPKILLLDEATSALDSESER-VVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQGTHDELLAK 1214 (1228)
T ss_pred HHHHHHHcCCCeeeeeccchhhhhhhHH-HHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEecccHHHHHhC
Confidence 9999999999999999999999999966 458899999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHH
Q 000755 831 GTDFMVLVGAH 841 (1300)
Q Consensus 831 ~~~~~~l~~~~ 841 (1300)
++.|.+++..+
T Consensus 1215 ~G~Y~~Lv~~q 1225 (1228)
T KOG0055|consen 1215 RGIYFRLVQLQ 1225 (1228)
T ss_pred CCchHHHhhhc
Confidence 99999987543
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-66 Score=643.65 Aligned_cols=529 Identities=21% Similarity=0.284 Sum_probs=415.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 000755 309 ALLYTLANYVGPYLIDTFVQYLNGEREFKNEGYVLVSTFFVAKIVECLAQRHWMFRLQVAGIKMRSVLVSMVYNKGLTLS 388 (1300)
Q Consensus 309 ~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~g~~ir~~L~~~Iy~K~L~ls 388 (1300)
.++..++..+.|++++.++|.+..........+.+++++++..++..++.....+...+.+.++...++..+|+|.++++
T Consensus 4 ~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~ 83 (569)
T PRK10789 4 LIIIAMLQLIPPKVVGIIVDGVTEQHMTTGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQH 83 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34556667788999999999775332111122333444444445556666665666777889999999999999999999
Q ss_pred chhhcCCCHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 389 CQAKQSYTSGEIINFMTVDAERIGDFGW-YMHDPWLVILQVSLALLILYKNLGL-ASIAALFATVLIMLTNFPLGRLQEN 466 (1300)
Q Consensus 389 ~~~~~~~~~G~Ivnl~s~Dv~~i~~~~~-~~~~~~~~~l~i~~~l~lL~~~lg~-~~l~~l~~~~l~~~~~~~~~k~~~~ 466 (1300)
...+.++++|++++++++|++.+..... .+..++..++..++++++++..+++ .+++.++++++.+.+...+.++.++
T Consensus 84 ~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~ 163 (569)
T PRK10789 84 PEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHE 163 (569)
T ss_pred HHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999986543 3444444444444443333212222 2333344444445555667777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Q 000755 467 FQDKLMGSKDKRMKVTSEILRNMRILKLQGWEMKFLSKIIELRKIEAGWLKKFLYTGAMTSFVFWG--APTFVSVATFGA 544 (1300)
Q Consensus 467 ~~~~~~~~~d~r~~~~~E~L~~ir~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~--~p~~v~~~~f~~ 544 (1300)
..++.++..++..+.+.|.++|+++||.|++|+.+.+++.+..+...+...+.............. ....+.++.+++
T Consensus 164 ~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 243 (569)
T PRK10789 164 RFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGS 243 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888888888999999999999999999999988887664332222222211111111111111 112233455677
Q ss_pred HHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCCCCCcceEEEEeEEE
Q 000755 545 CMLLGIPLESGKILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIASFLCLDDLQSDVVEKHPRGSSETAIEIVDGNF 624 (1300)
Q Consensus 545 ~~~~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~~~~~~~~~~I~i~~~~f 624 (1300)
+.+.++.+|.|.+++++.++..+..|+..+++.+..+.+++++.+||.++++.++..+..... .......|+++|++|
T Consensus 244 ~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~~~--~~~~~~~I~~~~v~~ 321 (569)
T PRK10789 244 WMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGSEP--VPEGRGELDVNIRQF 321 (569)
T ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCC--CCCCCCcEEEEEEEE
Confidence 888899999999999999999999999999999999999999999999999765432211111 111234699999999
Q ss_pred EecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe-------------EEEEecCCcC
Q 000755 625 AWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------KAYVAQSPWI 691 (1300)
Q Consensus 625 s~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-------------~ayv~Q~~~l 691 (1300)
+|+. .++++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|. ++||+|+|++
T Consensus 322 ~y~~-~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l 400 (569)
T PRK10789 322 TYPQ-TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFL 400 (569)
T ss_pred ECCC-CCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCee
Confidence 9974 3467999999999999999999999999999999999999999999999873 6999999999
Q ss_pred CCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecCCC
Q 000755 692 QSGNIEDNILFGKP-MDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFS 770 (1300)
Q Consensus 692 ~~~Ti~eNI~fg~~-~~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLARAly~~~~illLDep~s 770 (1300)
|++|++|||.+|.+ .++++++++++.+++++++..+|+|++|.+|++|.+|||||||||+||||++++|+|+|||||||
T Consensus 401 f~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts 480 (569)
T PRK10789 401 FSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALS 480 (569)
T ss_pred ccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccc
Confidence 99999999999965 78899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHhcCchHHHHHHHH
Q 000755 771 AVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSGTDFMVLVGAH 841 (1300)
Q Consensus 771 aLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~ 841 (1300)
+||+++++.+.+. +....+++|+|+||||++.++.||+|++|++|++++.|+++++++..+.|.++...+
T Consensus 481 ~LD~~~~~~i~~~-l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~ 550 (569)
T PRK10789 481 AVDGRTEHQILHN-LRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWYRDMYRYQ 550 (569)
T ss_pred cCCHHHHHHHHHH-HHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHcCChHHHHHHHh
Confidence 9999999999764 555667899999999999999999999999999999999999999888888877654
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-68 Score=656.95 Aligned_cols=480 Identities=18% Similarity=0.282 Sum_probs=340.2
Q ss_pred EEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC--eEEEEecCCcCCC-
Q 000755 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--TKAYVAQSPWIQS- 693 (1300)
Q Consensus 617 I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g--~~ayv~Q~~~l~~- 693 (1300)
|+++|++++|+ ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++| .++|++|++.++.
T Consensus 2 l~i~~ls~~~~---~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~ 78 (530)
T PRK15064 2 LSTANITMQFG---AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEE 78 (530)
T ss_pred EEEEEEEEEeC---CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCC
Confidence 68999999995 35799999999999999999999999999999999999999999999986 6899999987764
Q ss_pred CCHHHHHhcCCC-C------------------C-HHHHHHHHH----------HhcchHHHhhccCCCcccc-cCCCCCC
Q 000755 694 GNIEDNILFGKP-M------------------D-REKYDRVLE----------ACSLKKDLEILSFGDQTVI-GERGINL 742 (1300)
Q Consensus 694 ~Ti~eNI~fg~~-~------------------~-~~~~~~vl~----------~~~l~~dl~~l~~Gd~t~i-ge~g~~L 742 (1300)
.|++||+.++.. . + ...+.+..+ .....+-++.+ |..... .....+|
T Consensus 79 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~~L 156 (530)
T PRK15064 79 FTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGV--GIPEEQHYGLMSEV 156 (530)
T ss_pred CcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhC--CCChhHhcCchhhc
Confidence 599999987631 0 0 000000000 00011112222 222111 2356789
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCcccc-CCEEEEEeCCeEE-E
Q 000755 743 SGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPA-ADLILVMKDGKIT-Q 820 (1300)
Q Consensus 743 SGGQkqRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~-~ 820 (1300)
|||||||++|||||+.+|+++||||||++||+++...+.+ .+.. .++|+|+|||+++++.. ||+|++|++|+++ +
T Consensus 157 SgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~-~l~~--~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~~ 233 (530)
T PRK15064 157 APGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLED-VLNE--RNSTMIIISHDRHFLNSVCTHMADLDYGELRVY 233 (530)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHH-HHHh--CCCeEEEEeCCHHHHHhhcceEEEEeCCEEEEe
Confidence 9999999999999999999999999999999999888865 4442 47899999999999875 9999999999994 8
Q ss_pred ecChHHHHhcCchH-HHHHHHHHHHhhhhcccCCCCccccccccccCCCccccccccccCccccccccchhhhhhhHHHH
Q 000755 821 AGKYNDILNSGTDF-MVLVGAHQQALSALDSIEGGPVSERISMNKENGGMDTTNGVTMKEGNEDIQTDKVDEQYYIPSAR 899 (1300)
Q Consensus 821 ~g~~~~l~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~~lp~grnr~s~D~v~~~~y~~~~r 899 (1300)
.|++++++...... .....+ |-+...
T Consensus 234 ~g~~~~~~~~~~~~~~~~~~~-----------------------------------------------------~~~~~~ 260 (530)
T PRK15064 234 PGNYDEYMTAATQARERLLAD-----------------------------------------------------NAKKKA 260 (530)
T ss_pred cCCHHHHHHHHHHHHHHHHHH-----------------------------------------------------HHHHHH
Confidence 89998876421100 000000 000000
Q ss_pred HHHHHHhhhhhhHHHHHHHHhhchHHHHHhcchHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 900 ELSRLVGVCKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFHIAGAMEWLCFRLDMLSSLTFAFSLVLL 979 (1300)
Q Consensus 900 ~l~rl~~~~~sp~~~~~~E~l~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~ 979 (1300)
+.+++.. +..+.. .+..
T Consensus 261 ~~~~~~~----------------------------~~~~~~------~~~~----------------------------- 277 (530)
T PRK15064 261 QIAELQS----------------------------FVSRFS------ANAS----------------------------- 277 (530)
T ss_pred HHHHHHH----------------------------HHHHhh------ccch-----------------------------
Confidence 0000000 000000 0000
Q ss_pred HHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccCCCCCCCCCCceEEEEe
Q 000755 980 ISIPKGVIEPAIAGLAVTYGLNLNMLQAWVIWNLCNLENKIISVERILQYTCISSEPPLVIEESRPDCSWPTHGEVDILN 1059 (1300)
Q Consensus 980 ~~~~~g~~~~~~~gl~l~~~~~~~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~i~~~~ 1059 (1300)
. . ...+......++... ...+...........+...-+....++++|
T Consensus 278 --------~---~---------------------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 324 (530)
T PRK15064 278 --------K---A---------------------KQATSRAKQIDKIKL-EEVKPSSRQNPFIRFEQDKKLHRNALEVEN 324 (530)
T ss_pred --------h---h---------------------HHHHHHHHHHhhccc-cccCCccccCceeeCCCCCCCCCceEEEEe
Confidence 0 0 000000000111000 000000000000000000001234699999
Q ss_pred eeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEEEcCCC
Q 000755 1060 LQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDP 1139 (1300)
Q Consensus 1060 v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~vpQ~~ 1139 (1300)
++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++| +.+++|+||++
T Consensus 325 l~~~~~~~--~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i~~~~q~~ 391 (530)
T PRK15064 325 LTKGFDNG--PLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSE-----------NANIGYYAQDH 391 (530)
T ss_pred eEEeeCCc--eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-----------ceEEEEEcccc
Confidence 99999753 599999999999999999999999999999999999999999999987 25799999997
Q ss_pred C--CCc-ccHHHhcCCCC--CCCHHHHHHHHHHcCCc-HHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCEE
Q 000755 1140 T--MFE-GTVRNNLDPLE--EYKDEEIWEALDKCQLG-DEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVL 1213 (1300)
Q Consensus 1140 ~--lf~-gTvr~Nl~~~~--~~~d~~i~~~l~~~~l~-~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~~iL 1213 (1300)
. ++. .|+++|+.... ...++++.++|+.+++. +... ....+||||||||++||||++.+|+||
T Consensus 392 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~~LSgGq~qrv~la~al~~~p~ll 460 (530)
T PRK15064 392 AYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIK-----------KSVKVLSGGEKGRMLFGKLMMQKPNVL 460 (530)
T ss_pred cccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhc-----------CcccccCHHHHHHHHHHHHHhcCCCEE
Confidence 4 443 49999985421 22355678889998874 3322 234678999999999999999999999
Q ss_pred EEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhc-cCEEEEEeCCEEE-EecChhhHHhc
Q 000755 1214 VLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGIIE-EYDSPTKLLEN 1279 (1300)
Q Consensus 1214 lLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~-e~g~~~~l~~~ 1279 (1300)
||||||++||+.+.+.+.+.|++. +.|||+|||+++.+.. ||+|++|++|+++ ..|++.++++.
T Consensus 461 lLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 461 VMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 999999999999999999999886 4699999999999987 9999999999998 77999888754
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-68 Score=659.70 Aligned_cols=438 Identities=22% Similarity=0.342 Sum_probs=335.4
Q ss_pred EEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccC--CccEEEEcC--------------
Q 000755 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK--ISGTLKLCG-------------- 680 (1300)
Q Consensus 617 I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~--~~G~i~~~g-------------- 680 (1300)
++++|++++|+ ++++|+|+||++++|++++|+|+||||||||+++|+|+++| ++|+|.++|
T Consensus 2 l~i~~l~~~~~---~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFG---GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeC---CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 68999999995 35799999999999999999999999999999999999987 799999977
Q ss_pred eEEEEecCCcCCC-CCHHHHHhcCCCC-------CHH----HHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHH
Q 000755 681 TKAYVAQSPWIQS-GNIEDNILFGKPM-------DRE----KYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQ 748 (1300)
Q Consensus 681 ~~ayv~Q~~~l~~-~Ti~eNI~fg~~~-------~~~----~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkq 748 (1300)
.++||+|++.++. .|++||+.++... +.+ +.+++++.+++.... ......+|||||||
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG~~q 148 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADN----------VTRPVGDYGGGQQQ 148 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCc----------ccCchhhCCHHHHH
Confidence 2799999998765 5999999986431 111 222333333322100 12335689999999
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhh-cCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHH
Q 000755 749 RIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LRSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYND 826 (1300)
Q Consensus 749 RiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~-l~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 826 (1300)
|++||||++.+|+++||||||++||+.+...+.+ .+..+ .+++|+|+|||+++++.. ||+|++|++|+++..|+.++
T Consensus 149 rv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (500)
T TIGR02633 149 LVEIAKALNKQARLLILDEPSSSLTEKETEILLD-IIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMST 227 (500)
T ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCccc
Confidence 9999999999999999999999999999998876 44433 357899999999999875 99999999999987665322
Q ss_pred HHhcCchHHHHHHHHHHHhhhhcccCCCCccccccccccCCCccccccccccCccccccccchhhhhhhHHHHHHHHHHh
Q 000755 827 ILNSGTDFMVLVGAHQQALSALDSIEGGPVSERISMNKENGGMDTTNGVTMKEGNEDIQTDKVDEQYYIPSARELSRLVG 906 (1300)
Q Consensus 827 l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~~lp~grnr~s~D~v~~~~y~~~~r~l~rl~~ 906 (1300)
+... .
T Consensus 228 ~~~~-----~---------------------------------------------------------------------- 232 (500)
T TIGR02633 228 MSED-----D---------------------------------------------------------------------- 232 (500)
T ss_pred CCHH-----H----------------------------------------------------------------------
Confidence 1000 0
Q ss_pred hhhhhHHHHHHHHhhchHHHHHhcchHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 000755 907 VCKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFHIAGAMEWLCFRLDMLSSLTFAFSLVLLISIPKGV 986 (1300)
Q Consensus 907 ~~~sp~~~~~~E~l~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~~~~~~g~ 986 (1300)
+. +.+ .+.
T Consensus 233 -----~~----~~~---------------------------------------------------------------~~~ 240 (500)
T TIGR02633 233 -----II----TMM---------------------------------------------------------------VGR 240 (500)
T ss_pred -----HH----HHH---------------------------------------------------------------hCc
Confidence 00 000 000
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccCCCCCCCCCCceEEEEeeeeeeCC
Q 000755 987 IEPAIAGLAVTYGLNLNMLQAWVIWNLCNLENKIISVERILQYTCISSEPPLVIEESRPDCSWPTHGEVDILNLQVRYAP 1066 (1300)
Q Consensus 987 ~~~~~~gl~l~~~~~~~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~i~~~~v~~~y~~ 1066 (1300)
+ .+. ..+.++ .+ +....++++|++++|+.
T Consensus 241 --~---------------------------------~~~-----~~~~~~-------~~----~~~~~l~~~~l~~~~~~ 269 (500)
T TIGR02633 241 --E---------------------------------ITS-----LYPHEP-------HE----IGDVILEARNLTCWDVI 269 (500)
T ss_pred --c---------------------------------ccc-----cccccc-------cC----CCCceEEEeCCcccccc
Confidence 0 000 000000 00 11225999999999942
Q ss_pred C-CCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCC-CcceEEECCeecCCCCH-HHHhcccEEEcCCC---C
Q 000755 1067 H-LPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEP-TAGEIVIDGINISSIGL-HDLRSRLSIIPQDP---T 1140 (1300)
Q Consensus 1067 ~-~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p-~~G~I~idg~di~~i~~-~~lr~~i~~vpQ~~---~ 1140 (1300)
+ ...+|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++...+. ..+|++++|+||++ .
T Consensus 270 ~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 349 (500)
T TIGR02633 270 NPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHG 349 (500)
T ss_pred cccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCC
Confidence 1 23589999999999999999999999999999999999995 89999999999865433 45678899999996 3
Q ss_pred CCc-ccHHHhcCCCC-----C---CC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHc
Q 000755 1141 MFE-GTVRNNLDPLE-----E---YK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLL 1207 (1300)
Q Consensus 1141 lf~-gTvr~Nl~~~~-----~---~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall 1207 (1300)
+|+ .|+++|+.... . .. .+++.++++++++.+. ..+. ....||||||||++|||||+
T Consensus 350 l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~----~~~~LSgGqkqrv~la~al~ 419 (500)
T TIGR02633 350 IVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTA------SPFL----PIGRLSGGNQQKAVLAKMLL 419 (500)
T ss_pred cCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCC------CccC----ccccCCHHHHHHHHHHHHHh
Confidence 665 49999986421 1 11 1245667777766311 1222 33579999999999999999
Q ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhH
Q 000755 1208 KKSKVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKL 1276 (1300)
Q Consensus 1208 ~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l 1276 (1300)
.+|++|||||||++||+.+.+.+.+.|++.. ++.|||++||+++.+.. ||+|++|++|+++...+..++
T Consensus 420 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 490 (500)
T TIGR02633 420 TNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHAL 490 (500)
T ss_pred hCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccC
Confidence 9999999999999999999999999998864 47899999999999987 999999999999987765443
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-65 Score=603.72 Aligned_cols=529 Identities=23% Similarity=0.307 Sum_probs=427.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 304 FTAILALLYTLANYVGPYLIDTFVQYLNGEREFKNEGYVLVSTFFVAKIVECLAQRHWMFRLQVAGIKMRSVLVSMVYNK 383 (1300)
Q Consensus 304 ~~~l~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~g~~ir~~L~~~Iy~K 383 (1300)
..+++.++..++...+.+++-.+++.+-..+. ....+.++++++++.++.+++.........+.+.++|..|+..+++|
T Consensus 4 i~~ll~~l~~i~~i~qa~llA~~l~~l~~~~~-~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~ 82 (559)
T COG4988 4 ISALLAVLSGIAIIAQAALLADILTKLIEGQL-FQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDK 82 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666667777666665543322 22334455566666677777777777778899999999999999999
Q ss_pred HhcCCchhhcCCCHHHHHHHHHHHHHHHHHHHHH-hhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 384 GLTLSCQAKQSYTSGEIINFMTVDAERIGDFGWY-MHD---PWLVILQVSLALLILYKNLGLASIAALFATVLIMLTNFP 459 (1300)
Q Consensus 384 ~L~ls~~~~~~~~~G~Ivnl~s~Dv~~i~~~~~~-~~~---~~~~~l~i~~~l~lL~~~lg~~~l~~l~~~~l~~~~~~~ 459 (1300)
..++++..-++.++|+++++++.-++.++.++.. +.. ....|+.+.++++.+. |. ++++.++.++++.++.+.
T Consensus 83 l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~--w~-aalIllit~PlIPlfMil 159 (559)
T COG4988 83 LAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFN--WA-AALILLITAPLIPLFMIL 159 (559)
T ss_pred HHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--HH-HHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999887543 332 2334444444444443 32 334445555555555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 460 LGRLQENFQDKLMGSKDKRMKVTSEILRNMRILKLQGWEMKFLSKI----IELRKIEAGWLKKFLYTGAMTSFVFWGAPT 535 (1300)
Q Consensus 460 ~~k~~~~~~~~~~~~~d~r~~~~~E~L~~ir~IK~~~~E~~f~~~i----~~~R~~E~~~l~~~~~~~~~~~~~~~~~p~ 535 (1300)
+++..++..++.++....-....-+.|+|+.++|.|+..+...++| ++.|+..++.++-.....++.-++...+.
T Consensus 160 vg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsi- 238 (559)
T COG4988 160 VGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSI- 238 (559)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 7777788888888888888889999999999999999988777777 44688888888877666665555433322
Q ss_pred HHHHHHHHHHHHhc-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccC-CCCCCC
Q 000755 536 FVSVATFGACMLLG-IPLESGKILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIASFLCLDDLQSDVVEK-HPRGSS 613 (1300)
Q Consensus 536 ~v~~~~f~~~~~~~-~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~-~~~~~~ 613 (1300)
..++.+.+..+.+ ++++....+.++.+.--+..|++.+...++.-.++..+.+++..|++.|....+..++ ......
T Consensus 239 -AlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~ 317 (559)
T COG4988 239 -ALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEP 317 (559)
T ss_pred -HHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCC
Confidence 2233344445556 6999999999998888889999999999999999999999999999887654433221 111112
Q ss_pred cceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC-------------
Q 000755 614 ETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG------------- 680 (1300)
Q Consensus 614 ~~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g------------- 680 (1300)
...++.+|++|.|+.+ +++++|+||++++|+++||||+||||||||+++|+|+++|++|+|.+||
T Consensus 318 ~~ei~~~~l~~~y~~g--~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k 395 (559)
T COG4988 318 PIEISLENLSFRYPDG--KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRK 395 (559)
T ss_pred CceeeecceEEecCCC--CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHh
Confidence 2345556999999743 3899999999999999999999999999999999999999999999998
Q ss_pred eEEEEecCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHHHHHccC
Q 000755 681 TKAYVAQSPWIQSGNIEDNILFGKP-MDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQD 759 (1300)
Q Consensus 681 ~~ayv~Q~~~l~~~Ti~eNI~fg~~-~~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLARAly~~ 759 (1300)
+++||+|+|++|.+||||||+|+++ .++++..++++..++.+.++. |+|.+|.|||+|.+|||||+||++||||++++
T Consensus 396 ~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~ 474 (559)
T COG4988 396 QISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSP 474 (559)
T ss_pred HeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCC
Confidence 3699999999999999999999999 678999999999999999999 99999999999999999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHhcCchHHHHHH
Q 000755 760 ADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSGTDFMVLVG 839 (1300)
Q Consensus 760 ~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~l~~ 839 (1300)
+++||||||||+||++|++.|. +.+..+.++||+|+||||++.+..+|+|++|++|+++++|+|+++.++++.|..++.
T Consensus 475 ~~l~llDEpTA~LD~etE~~i~-~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~~~~y~~l~~ 553 (559)
T COG4988 475 ASLLLLDEPTAHLDAETEQIIL-QALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQGLYANLLK 553 (559)
T ss_pred CCEEEecCCccCCCHhHHHHHH-HHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhcCcHHHHHHH
Confidence 9999999999999999988775 567778889999999999999999999999999999999999999999999998886
Q ss_pred HHH
Q 000755 840 AHQ 842 (1300)
Q Consensus 840 ~~~ 842 (1300)
+++
T Consensus 554 ~q~ 556 (559)
T COG4988 554 QQE 556 (559)
T ss_pred HHh
Confidence 543
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-65 Score=634.83 Aligned_cols=540 Identities=16% Similarity=0.223 Sum_probs=425.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 293 ALFFSAWKEIVFTAILALLYTLANYVGPYLIDTFVQYLNGEREFKNEGYVLVSTFFVAKIVECLAQRHWMFRLQVAGIKM 372 (1300)
Q Consensus 293 ~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~g~~i 372 (1300)
.+++.+++.++...++.++..++..+.|++++.++|.+...+.. ..+++.+++..++..+......+...++..++
T Consensus 12 ~~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (585)
T TIGR01192 12 SYLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSDV----LPTLALWAGFGVFNTIAYVLVAREADRLAHGR 87 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888999999999999999999999999977543211 11111222233344455555566677888899
Q ss_pred HHHHHHHHHHHHhcCCchhhcCCCHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 000755 373 RSVLVSMVYNKGLTLSCQAKQSYTSGEIINFMTVDAERIGDFGWY-MHDPWLVILQVSLALL-ILYKNLGLASIAALFAT 450 (1300)
Q Consensus 373 r~~L~~~Iy~K~L~ls~~~~~~~~~G~Ivnl~s~Dv~~i~~~~~~-~~~~~~~~l~i~~~l~-lL~~~lg~~~l~~l~~~ 450 (1300)
+..++..+|+|.++++...++++++|++++++++|++.+.+++.. +......++.++++++ +++..+.++.+ .++++
T Consensus 88 ~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li-~l~~~ 166 (585)
T TIGR01192 88 RATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIV-LMVLG 166 (585)
T ss_pred HHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 999999999999999999999999999999999999999876542 3333344444433333 33444444333 33344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 000755 451 VLIMLTNFPLGRLQENFQDKLMGSKDKRMKVTSEILRNMRILKLQGWEMKFLSKIIELRKIEAGWLKKFLYTGAMTSFV- 529 (1300)
Q Consensus 451 ~l~~~~~~~~~k~~~~~~~~~~~~~d~r~~~~~E~L~~ir~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~- 529 (1300)
++...+...+.++.++..++..+..++..+.+.|.++|+++||.++.|+.+.+++.+..+.-.+...+..........+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (585)
T TIGR01192 167 ILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLN 246 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555667777777788888888899999999999999999999999888887664332222111111111111111
Q ss_pred H-HHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCC
Q 000755 530 F-WGAPTFVSVATFGACMLLGIPLESGKILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIASFLCLDDLQSDVVEKH 608 (1300)
Q Consensus 530 ~-~~~p~~v~~~~f~~~~~~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~~ 608 (1300)
. ...-..+.++.++++.+.++.++.|.+++++.++..+..|+..+...+..+.+++.+++|+.++++.++..++.....
T Consensus 247 ~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~ 326 (585)
T TIGR01192 247 RMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPADAP 326 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCccCC
Confidence 1 111123345567788888999999999999999999999999999999999999999999999987654322111111
Q ss_pred CCCCCcceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe-------
Q 000755 609 PRGSSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------- 681 (1300)
Q Consensus 609 ~~~~~~~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~------- 681 (1300)
+.......++++|++|+|+. ++++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 327 ~~~~~~~~i~~~~v~~~y~~--~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~ 404 (585)
T TIGR01192 327 ELPNVKGAVEFRHITFEFAN--SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTR 404 (585)
T ss_pred CCCCCCCeEEEEEEEEECCC--CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCH
Confidence 11112346999999999973 246899999999999999999999999999999999999999999999873
Q ss_pred ------EEEEecCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHHH
Q 000755 682 ------KAYVAQSPWIQSGNIEDNILFGKP-MDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIAR 754 (1300)
Q Consensus 682 ------~ayv~Q~~~l~~~Ti~eNI~fg~~-~~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLAR 754 (1300)
++||+|+|++|++|++|||.++.+ .++++.+++++.+++++++..+|+|++|.+|++|.+|||||||||+|||
T Consensus 405 ~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lAR 484 (585)
T TIGR01192 405 ESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIAR 484 (585)
T ss_pred HHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHH
Confidence 699999999999999999999975 5788899999999999999999999999999999999999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHhcCchH
Q 000755 755 ALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSGTDF 834 (1300)
Q Consensus 755 Aly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 834 (1300)
|++++|+++|||||||+||+++++.+.+ .+....+++|+|+||||++.++.||+|++|++|++++.|+++++++.++.|
T Consensus 485 all~~p~ililDEpts~LD~~~~~~i~~-~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y 563 (585)
T TIGR01192 485 AILKNAPILVLDEATSALDVETEARVKN-AIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKDGRF 563 (585)
T ss_pred HHhcCCCEEEEECCccCCCHHHHHHHHH-HHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHCCChH
Confidence 9999999999999999999999998865 556666789999999999999999999999999999999999999998888
Q ss_pred HHHHHH
Q 000755 835 MVLVGA 840 (1300)
Q Consensus 835 ~~l~~~ 840 (1300)
.++...
T Consensus 564 ~~l~~~ 569 (585)
T TIGR01192 564 YKLLRR 569 (585)
T ss_pred HHHHHh
Confidence 887654
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-68 Score=653.88 Aligned_cols=433 Identities=23% Similarity=0.326 Sum_probs=335.2
Q ss_pred eEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC--------------e
Q 000755 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--------------T 681 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g--------------~ 681 (1300)
.++++|++++|+ ++++|+|+||++++|++++|+|+||||||||+++|+|.++|++|+|.++| .
T Consensus 4 ~l~~~~l~~~~~---~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 4 YLSFDGIGKTFP---GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred eEEEeeeEEEEC---CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 589999999996 24699999999999999999999999999999999999999999999876 2
Q ss_pred EEEEecCCcCCC-CCHHHHHhcCCC------CCH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHH
Q 000755 682 KAYVAQSPWIQS-GNIEDNILFGKP------MDR----EKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRI 750 (1300)
Q Consensus 682 ~ayv~Q~~~l~~-~Ti~eNI~fg~~------~~~----~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRi 750 (1300)
++|++|++.++. .|++||+.++.. .+. ++..++++.+++. ........+||||||||+
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGq~qrv 149 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVD-----------IDPDTPLKYLSIGQRQMV 149 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCC-----------CCcCCchhhCCHHHHHHH
Confidence 799999998776 599999998642 122 2333344444332 123455678999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhh-cCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHHH
Q 000755 751 QIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LRSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDIL 828 (1300)
Q Consensus 751 aLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~-l~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 828 (1300)
+||||++.+|+++||||||++||+.+.+.+++. +..+ .+++|+|+|||+++++.. ||+|++|++|+++..++..+..
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 228 (501)
T PRK11288 150 EIAKALARNARVIAFDEPTSSLSAREIEQLFRV-IRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDDMAQV 228 (501)
T ss_pred HHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCccccC
Confidence 999999999999999999999999999988754 4433 347899999999998865 9999999999998644211000
Q ss_pred hcCchHHHHHHHHHHHhhhhcccCCCCccccccccccCCCccccccccccCccccccccchhhhhhhHHHHHHHHHHhhh
Q 000755 829 NSGTDFMVLVGAHQQALSALDSIEGGPVSERISMNKENGGMDTTNGVTMKEGNEDIQTDKVDEQYYIPSARELSRLVGVC 908 (1300)
Q Consensus 829 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~~lp~grnr~s~D~v~~~~y~~~~r~l~rl~~~~ 908 (1300)
. .. ++
T Consensus 229 ~----~~----------------------------------------------------------------~~------- 233 (501)
T PRK11288 229 D----RD----------------------------------------------------------------QL------- 233 (501)
T ss_pred C----HH----------------------------------------------------------------HH-------
Confidence 0 00 00
Q ss_pred hhhHHHHHHHHhhchHHHHHhcchHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Q 000755 909 KAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFHIAGAMEWLCFRLDMLSSLTFAFSLVLLISIPKGVIE 988 (1300)
Q Consensus 909 ~sp~~~~~~E~l~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~~~~~~g~~~ 988 (1300)
++.+ .....
T Consensus 234 -----------------~~~~-----------------------------------------------------~~~~~- 242 (501)
T PRK11288 234 -----------------VQAM-----------------------------------------------------VGREI- 242 (501)
T ss_pred -----------------HHHh-----------------------------------------------------cCCCc-
Confidence 0000 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccCCCCCCCCCCceEEEEeeeeeeCCCC
Q 000755 989 PAIAGLAVTYGLNLNMLQAWVIWNLCNLENKIISVERILQYTCISSEPPLVIEESRPDCSWPTHGEVDILNLQVRYAPHL 1068 (1300)
Q Consensus 989 ~~~~gl~l~~~~~~~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~i~~~~v~~~y~~~~ 1068 (1300)
++. .+.++ .+ +....++++|++++
T Consensus 243 -----------------------------------~~~-----~~~~~-------~~----~~~~~l~~~~~~~~----- 266 (501)
T PRK11288 243 -----------------------------------GDI-----YGYRP-------RP----LGEVRLRLDGLKGP----- 266 (501)
T ss_pred -----------------------------------ccc-----ccccc-------cC----CCCcEEEEeccccC-----
Confidence 000 00000 00 11235899999842
Q ss_pred CcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCH-HHHhcccEEEcCCCC---CCc-
Q 000755 1069 PLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGL-HDLRSRLSIIPQDPT---MFE- 1143 (1300)
Q Consensus 1069 ~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~-~~lr~~i~~vpQ~~~---lf~- 1143 (1300)
.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. ...|++++|+||++. +|.
T Consensus 267 -~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 345 (501)
T PRK11288 267 -GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPV 345 (501)
T ss_pred -CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCC
Confidence 38999999999999999999999999999999999999999999999999865433 345778999999973 555
Q ss_pred ccHHHhcCCCCC---------CC----HHHHHHHHHHcCCc-HHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccC
Q 000755 1144 GTVRNNLDPLEE---------YK----DEEIWEALDKCQLG-DEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKK 1209 (1300)
Q Consensus 1144 gTvr~Nl~~~~~---------~~----d~~i~~~l~~~~l~-~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~ 1209 (1300)
.|+.+|+..... .. ++++.++++.+++. +. . .....+||||||||++|||||+.+
T Consensus 346 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~----~~~~~~LSgGq~qrl~la~al~~~ 414 (501)
T PRK11288 346 HSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPS-------R----EQLIMNLSGGNQQKAILGRWLSED 414 (501)
T ss_pred CCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCC-------c----cCccccCCHHHHHHHHHHHHHccC
Confidence 699999864210 01 12456677777662 21 2 223457999999999999999999
Q ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHH
Q 000755 1210 SKVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLL 1277 (1300)
Q Consensus 1210 ~~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~ 1277 (1300)
|++|||||||++||+.+.+.+.+.|++.. .+.|||+|||+++.+.. ||+|++|++|++++.|++++..
T Consensus 415 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 484 (501)
T PRK11288 415 MKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQAT 484 (501)
T ss_pred CCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEccccCC
Confidence 99999999999999999999999998864 37899999999999987 9999999999999999887765
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-65 Score=635.05 Aligned_cols=522 Identities=19% Similarity=0.211 Sum_probs=414.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 296 FSAWKEIVFTAILALLYTLANYVGPYLIDTFVQYLNGEREFKNEGYVLVSTFFVAKIVECLAQRHWMFRLQVAGIKMRSV 375 (1300)
Q Consensus 296 ~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~g~~ir~~ 375 (1300)
+.+++.++..+++.++..++..+.|++++.++|.+..... ....+.+++++++..++..++.....+...+++.++...
T Consensus 2 ~~~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (544)
T TIGR01842 2 SKNKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGS-VPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGA 80 (544)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677888888899999999999999999997643221 112233444455555666777777778888999999999
Q ss_pred HHHHHHHHHhcCCchhhcCCCHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 376 LVSMVYNKGLTLSCQAKQSYTSGEIINFMTVDAERIGDFGWY--MHDPWLVILQVSLALLILYKNLGLASIAALFATVLI 453 (1300)
Q Consensus 376 L~~~Iy~K~L~ls~~~~~~~~~G~Ivnl~s~Dv~~i~~~~~~--~~~~~~~~l~i~~~l~lL~~~lg~~~l~~l~~~~l~ 453 (1300)
++..+|+|.++++.. ..+...+.+++|++++.+++.. +..+...++.++.++++++..+.++.++ ++.++++
T Consensus 81 lr~~~~~~ll~~~~~-----~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~-l~~~~l~ 154 (544)
T TIGR01842 81 LNQPIFAASFSATLR-----RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIYLLVCFLLHPWIGILA-LGGAVVL 154 (544)
T ss_pred HHHHHHHHHhcCccc-----CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHH
Confidence 999999999999873 2356788899999999987543 2333344444333334444444433332 3333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 000755 454 MLTNFPLGRLQENFQDKLMGSKDKRMKVTSEILRNMRILKLQGWEMKFLSKIIELRKIEAGWLKKFLYTGAMTSFVFWG- 532 (1300)
Q Consensus 454 ~~~~~~~~k~~~~~~~~~~~~~d~r~~~~~E~L~~ir~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~- 532 (1300)
+++.....+..++..++.++..+++.+.+.|.++|+++||.|++|+.+.+++.+..++..+...+..............
T Consensus 155 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (544)
T TIGR01842 155 VGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYF 234 (544)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556677777788889999999999999999999999999999999998776554444333322222222221111
Q ss_pred -HHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCCC
Q 000755 533 -APTFVSVATFGACMLLGIPLESGKILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIASFLCLDDLQSDVVEKHPRG 611 (1300)
Q Consensus 533 -~p~~v~~~~f~~~~~~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~~~~~ 611 (1300)
....+.+++++++.+.++.+|+|.+++++.++..+..|+..++..+..+.+++.+.+|+.++++.++..+... . ..
T Consensus 235 ~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~-~--~~ 311 (544)
T TIGR01842 235 RIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPAM-P--LP 311 (544)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCCC-C--CC
Confidence 1123345567888888999999999999999999999999999999999999999999999997654332111 1 11
Q ss_pred CCcceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC-----------
Q 000755 612 SSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG----------- 680 (1300)
Q Consensus 612 ~~~~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g----------- 680 (1300)
..+..++++|++|+|+. .++++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 312 ~~~~~i~~~~v~~~y~~-~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~ 390 (544)
T TIGR01842 312 EPEGHLSVENVTIVPPG-GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETF 390 (544)
T ss_pred CCCCeEEEEEEEEEcCC-CCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHH
Confidence 22346999999999973 346899999999999999999999999999999999999999999999987
Q ss_pred --eEEEEecCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHHHHHc
Q 000755 681 --TKAYVAQSPWIQSGNIEDNILFGKP-MDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALY 757 (1300)
Q Consensus 681 --~~ayv~Q~~~l~~~Ti~eNI~fg~~-~~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLARAly 757 (1300)
.++||||+|++|++|++|||.++.+ .+++++.++++.++++++++.+|+|++|.+||+|.+||||||||++||||++
T Consensus 391 ~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall 470 (544)
T TIGR01842 391 GKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALY 470 (544)
T ss_pred hhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHh
Confidence 3699999999999999999997665 7889999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHh
Q 000755 758 QDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-RSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILN 829 (1300)
Q Consensus 758 ~~~~illLDep~saLD~~t~~~i~~~~~~~~l-~~~TvIlvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 829 (1300)
++|+++|||||||+||+++++.+.+ .+.... +++|+|+|||+++.+..||+|++|++|++++.|+++++++
T Consensus 471 ~~~~ililDEpts~LD~~~~~~i~~-~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 471 GDPKLVVLDEPNSNLDEEGEQALAN-AIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred cCCCEEEEeCCccccCHHHHHHHHH-HHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 9999999999999999999998875 455543 6899999999999988899999999999999999999864
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-67 Score=649.02 Aligned_cols=434 Identities=23% Similarity=0.354 Sum_probs=331.2
Q ss_pred EeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe--------------EEEE
Q 000755 620 VDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--------------KAYV 685 (1300)
Q Consensus 620 ~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~--------------~ayv 685 (1300)
+|++++|+ ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|. ++|+
T Consensus 2 ~nl~~~~~---~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 78 (491)
T PRK10982 2 SNISKSFP---GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMV 78 (491)
T ss_pred CceEEEeC---CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 67889985 357999999999999999999999999999999999999999999999872 6999
Q ss_pred ecCCcCC-CCCHHHHHhcCCC------CCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHHHHHcc
Q 000755 686 AQSPWIQ-SGNIEDNILFGKP------MDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQ 758 (1300)
Q Consensus 686 ~Q~~~l~-~~Ti~eNI~fg~~------~~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLARAly~ 758 (1300)
+|++.++ +.|++||+.++.. .+.++..+.+ .+-++.+ |..........+||||||||++||||++.
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA~al~~ 151 (491)
T PRK10982 79 HQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDT-----KAIFDEL--DIDIDPRAKVATLSVSQMQMIEIAKAFSY 151 (491)
T ss_pred ecccccccCCCHHHHhhcccccccccccCHHHHHHHH-----HHHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHHh
Confidence 9999765 4699999998642 1222111111 1112222 22233455678899999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHhh-cCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHHHhcCchHHH
Q 000755 759 DADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LRSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDILNSGTDFMV 836 (1300)
Q Consensus 759 ~~~illLDep~saLD~~t~~~i~~~~~~~~-l~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 836 (1300)
+|+++||||||++||+.+.+.+++. +..+ ..++|+|++||+++.+.. ||+|++|++|++++.|+.+++... .
T Consensus 152 ~p~lllLDEPt~~LD~~~~~~l~~~-l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~-----~ 225 (491)
T PRK10982 152 NAKIVIMDEPTSSLTEKEVNHLFTI-IRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLTMD-----K 225 (491)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCCHH-----H
Confidence 9999999999999999999988764 4443 357899999999998865 999999999999988876443100 0
Q ss_pred HHHHHHHHhhhhcccCCCCccccccccccCCCccccccccccCccccccccchhhhhhhHHHHHHHHHHhhhhhhHHHHH
Q 000755 837 LVGAHQQALSALDSIEGGPVSERISMNKENGGMDTTNGVTMKEGNEDIQTDKVDEQYYIPSARELSRLVGVCKAPVIQHF 916 (1300)
Q Consensus 837 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~~lp~grnr~s~D~v~~~~y~~~~r~l~rl~~~~~sp~~~~~ 916 (1300)
..
T Consensus 226 ~~------------------------------------------------------------------------------ 227 (491)
T PRK10982 226 II------------------------------------------------------------------------------ 227 (491)
T ss_pred HH------------------------------------------------------------------------------
Confidence 00
Q ss_pred HHHhhchHHHHHhcchHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Q 000755 917 SETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFHIAGAMEWLCFRLDMLSSLTFAFSLVLLISIPKGVIEPAIAGLAV 996 (1300)
Q Consensus 917 ~E~l~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~gl~l 996 (1300)
+.+ + +.
T Consensus 228 -~~~--------~-------------------------------------------------------~~---------- 233 (491)
T PRK10982 228 -AMM--------V-------------------------------------------------------GR---------- 233 (491)
T ss_pred -HHH--------h-------------------------------------------------------CC----------
Confidence 000 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccCCCCCCCCCCceEEEEeeeeeeCCCCCcceeeee
Q 000755 997 TYGLNLNMLQAWVIWNLCNLENKIISVERILQYTCISSEPPLVIEESRPDCSWPTHGEVDILNLQVRYAPHLPLVLRGLT 1076 (1300)
Q Consensus 997 ~~~~~~~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~i~~~~v~~~y~~~~~~vL~~is 1076 (1300)
.+ .+ ..+.++ . + +....|+++|++++| +.+|+|+|
T Consensus 234 ----------------------~~---~~-----~~~~~~------~-~----~~~~~i~~~~l~~~~----~~~l~~vs 268 (491)
T PRK10982 234 ----------------------SL---TQ-----RFPDKE------N-K----PGEVILEVRNLTSLR----QPSIRDVS 268 (491)
T ss_pred ----------------------Cc---cc-----cccccc------C-C----CCCcEEEEeCccccc----Ccccceee
Confidence 00 00 000000 0 0 122369999999974 24899999
Q ss_pred EEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHH-HhcccEEEcCCCC---CCcc-cHHHh--
Q 000755 1077 CTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHD-LRSRLSIIPQDPT---MFEG-TVRNN-- 1149 (1300)
Q Consensus 1077 l~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~-lr~~i~~vpQ~~~---lf~g-Tvr~N-- 1149 (1300)
|+|++||++||+|+||||||||+++|+|+.+|++|+|.++|.++...+... +|+.++|+||++. +|.. |+.+|
T Consensus 269 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~ 348 (491)
T PRK10982 269 FDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSL 348 (491)
T ss_pred EEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHhee
Confidence 999999999999999999999999999999999999999999998766543 4677999999963 5653 76666
Q ss_pred ---cCCC----CCCC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEeCC
Q 000755 1150 ---LDPL----EEYK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEA 1218 (1300)
Q Consensus 1150 ---l~~~----~~~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~~iLlLDEp 1218 (1300)
+... .... ++.+.++++.+++.+ .. ......+||||||||++||||++++|+|||||||
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~----~~~~~~~LSgGq~qrv~la~al~~~p~illLDEP 418 (491)
T PRK10982 349 ISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKT------PG----HRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEP 418 (491)
T ss_pred hhhhhhhcccccccCcHHHHHHHHHHHHhcCccC------CC----cccccccCCcHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 3211 1011 123455666665531 01 2334467999999999999999999999999999
Q ss_pred CcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhH
Q 000755 1219 TASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKL 1276 (1300)
Q Consensus 1219 Ts~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l 1276 (1300)
|+|||+.+.+.+.+.|++.. .+.|||++||+++.+.. ||||++|++|+++..++++++
T Consensus 419 t~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 478 (491)
T PRK10982 419 TRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTKTT 478 (491)
T ss_pred CcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEccccC
Confidence 99999999999999998754 47899999999999987 999999999999988876543
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-64 Score=628.70 Aligned_cols=510 Identities=23% Similarity=0.262 Sum_probs=398.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 298 AWKEIVFTAILALLYTLANYVGPYLIDTFVQYLN-GEREFKNEGYVLVSTFFVAKIVECLAQRHWMFRLQVAGIKMRSVL 376 (1300)
Q Consensus 298 ~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~l~-~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~g~~ir~~L 376 (1300)
+|+.++..+++.++..++..+.|++++.++|.+. .... ....+.+++.+++..++..++.....+...+++.++...+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 79 (529)
T TIGR02857 1 ARRALALLGLLGALGALLIIAQAWLLARVIDGLISAGEP-LAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQL 79 (529)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566778888899999999999999999999873 3221 1222333444445555566667777778888999999999
Q ss_pred HHHHHHHHhcCCchhhcCCCHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 000755 377 VSMVYNKGLTLSCQAKQSYTSGEIINFMTVDAERIGDFGW-YMHDPWLVILQVSLALLIL-YKNLGLASIAALFATVLIM 454 (1300)
Q Consensus 377 ~~~Iy~K~L~ls~~~~~~~~~G~Ivnl~s~Dv~~i~~~~~-~~~~~~~~~l~i~~~l~lL-~~~lg~~~l~~l~~~~l~~ 454 (1300)
+..+|+|.++++...+.++++|+++|++++|++.+++++. .+..++...+.++++++++ +..+.++ ++.++.+++..
T Consensus 80 r~~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~l~~~~l~~ 158 (529)
T TIGR02857 80 RERLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISG-LILLLTAPLIP 158 (529)
T ss_pred HHHHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHH
Confidence 9999999999999999999999999999999999998754 3444444444444443333 3333222 22233333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 455 LTNFPLGRLQENFQDKLMGSKDKRMKVTSEILRNMRILKLQGWEMKFLSKIIELRKIEAGWLKKFLYTGAMTSFVFWGAP 534 (1300)
Q Consensus 455 ~~~~~~~k~~~~~~~~~~~~~d~r~~~~~E~L~~ir~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~~p 534 (1300)
.+...+.++.++..++.++..+++.+.+.|.++|+++||.|++|+.+.+++.+..++..+...+................
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (529)
T TIGR02857 159 IFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFA 238 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445677777778888889999999999999999999999999999888866433222221111111111111111111
Q ss_pred --HHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCCCC
Q 000755 535 --TFVSVATFGACMLLGIPLESGKILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIASFLCLDDLQSDVVEKHPRGS 612 (1300)
Q Consensus 535 --~~v~~~~f~~~~~~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~~~~~~ 612 (1300)
..+.+..++++.+..+.+|.|.+++++.+...+..|+..+...+..+.+++++++|+.++++.++.+.+.. ..+ ..
T Consensus 239 ~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~-~~~-~~ 316 (529)
T TIGR02857 239 TLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKA-PVT-AA 316 (529)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCc-CCC-CC
Confidence 11222234455556788999999999999999999999999999999999999999999997543221111 111 11
Q ss_pred CcceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe-----------
Q 000755 613 SETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT----------- 681 (1300)
Q Consensus 613 ~~~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~----------- 681 (1300)
....|+++|++|+|+. .++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 317 ~~~~i~~~~v~f~y~~-~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr 395 (529)
T TIGR02857 317 PAPSLEFSGLSVAYPG-RRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWR 395 (529)
T ss_pred CCCeEEEEEEEEECCC-CCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHH
Confidence 2247999999999974 3358999999999999999999999999999999999999999999999984
Q ss_pred --EEEEecCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHHHHHcc
Q 000755 682 --KAYVAQSPWIQSGNIEDNILFGKP-MDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQ 758 (1300)
Q Consensus 682 --~ayv~Q~~~l~~~Ti~eNI~fg~~-~~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLARAly~ 758 (1300)
++||+|+|++|++||+|||.+|.+ .++++.+++++.++++++++.+|+|++|.+||+|.+||||||||++||||+++
T Consensus 396 ~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~ 475 (529)
T TIGR02857 396 DQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLR 475 (529)
T ss_pred hheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhc
Confidence 799999999999999999999876 68899999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCccccCCEEEEE
Q 000755 759 DADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVM 813 (1300)
Q Consensus 759 ~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~~d~i~~l 813 (1300)
+|+|++||||||+||+++++.+++ .+....+++|+|+||||++.+..||+|++|
T Consensus 476 ~~~ililDE~ts~lD~~~~~~i~~-~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 476 DAPLLLLDEPTAHLDAETEALVTE-ALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred CCCEEEEeCcccccCHHHHHHHHH-HHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 999999999999999999999975 455666789999999999999999999985
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-66 Score=643.06 Aligned_cols=480 Identities=22% Similarity=0.313 Sum_probs=339.0
Q ss_pred eEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC--eEEEEecCCcCCC
Q 000755 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--TKAYVAQSPWIQS 693 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g--~~ayv~Q~~~l~~ 693 (1300)
.|+++|++++|+. ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ .++||+|+|+++.
T Consensus 6 ~l~i~~l~~~y~~--~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~ 83 (556)
T PRK11819 6 IYTMNRVSKVVPP--KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDP 83 (556)
T ss_pred EEEEeeEEEEeCC--CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCC
Confidence 5899999999952 36799999999999999999999999999999999999999999999864 6899999999875
Q ss_pred -CCHHHHHhcCCC-C----------------CHH-------HHHHH---HHHhc-------chHHHhhccCCCcccccCC
Q 000755 694 -GNIEDNILFGKP-M----------------DRE-------KYDRV---LEACS-------LKKDLEILSFGDQTVIGER 738 (1300)
Q Consensus 694 -~Ti~eNI~fg~~-~----------------~~~-------~~~~v---l~~~~-------l~~dl~~l~~Gd~t~ige~ 738 (1300)
.|+.||+.++.. + ..+ ++.++ ++.++ +..-++.+ |.. ....+
T Consensus 84 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~-~~~~~ 160 (556)
T PRK11819 84 EKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL--RCP-PWDAK 160 (556)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC--CCC-cccCc
Confidence 499999987631 0 000 01111 11100 11112222 221 23556
Q ss_pred CCCCCHHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCcccc-CCEEEEEeCCe
Q 000755 739 GINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPA-ADLILVMKDGK 817 (1300)
Q Consensus 739 g~~LSGGQkqRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~-~d~i~~l~~G~ 817 (1300)
..+||||||||++||||++.+|+++||||||++||+.+...+.+ ++..+ +.|+|+|||+++++.. ||+|++|++|+
T Consensus 161 ~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~-~L~~~--~~tviiisHd~~~~~~~~d~i~~l~~g~ 237 (556)
T PRK11819 161 VTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQ-FLHDY--PGTVVAVTHDRYFLDNVAGWILELDRGR 237 (556)
T ss_pred hhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHH-HHHhC--CCeEEEEeCCHHHHHhhcCeEEEEeCCE
Confidence 77899999999999999999999999999999999999988864 55544 3599999999999876 99999999999
Q ss_pred EE-EecChHHHHhcCchHHHHHHHHHHHhhhhcccCCCCccccccccccCCCccccccccccCccccccccchhhhhhhH
Q 000755 818 IT-QAGKYNDILNSGTDFMVLVGAHQQALSALDSIEGGPVSERISMNKENGGMDTTNGVTMKEGNEDIQTDKVDEQYYIP 896 (1300)
Q Consensus 818 i~-~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~~lp~grnr~s~D~v~~~~y~~ 896 (1300)
++ +.|+|+++.+....- . ...... +-.
T Consensus 238 i~~~~g~~~~~~~~~~~~--~-~~~~~~-------------------------------------------------~~~ 265 (556)
T PRK11819 238 GIPWEGNYSSWLEQKAKR--L-AQEEKQ-------------------------------------------------EAA 265 (556)
T ss_pred EEEecCCHHHHHHHHHHH--H-HHHHHH-------------------------------------------------HHH
Confidence 86 889998876421100 0 000000 000
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHhhchHHHHHhcchHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 897 SARELSRLVGVCKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFHIAGAMEWLCFRLDMLSSLTFAFSL 976 (1300)
Q Consensus 897 ~~r~l~rl~~~~~sp~~~~~~E~l~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~ 976 (1300)
..++++++ ..|.....
T Consensus 266 ~~~~~~~~----------------------------------------------------~~~~~~~~------------ 281 (556)
T PRK11819 266 RQKALKRE----------------------------------------------------LEWVRQSP------------ 281 (556)
T ss_pred HHHHHHHH----------------------------------------------------HHHHHHhh------------
Confidence 00000000 00000000
Q ss_pred HHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccCCCCCCCCCCceEE
Q 000755 977 VLLISIPKGVIEPAIAGLAVTYGLNLNMLQAWVIWNLCNLENKIISVERILQYTCISSEPPLVIEESRPDCSWPTHGEVD 1056 (1300)
Q Consensus 977 ~~~~~~~~g~~~~~~~gl~l~~~~~~~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~i~ 1056 (1300)
.+ . ....+......+|..+. .+.+.+.......++...+....++
T Consensus 282 -------~~-----~---------------------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~ 326 (556)
T PRK11819 282 -------KA-----R---------------------QAKSKARLARYEELLSE--EYQKRNETNEIFIPPGPRLGDKVIE 326 (556)
T ss_pred -------hh-----h---------------------HHHHHHHHHHHHHhhcc--cccccCCCceeecCCCCCCCCeEEE
Confidence 00 0 00000001111222111 0111100000000111112234699
Q ss_pred EEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEEEc
Q 000755 1057 ILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIP 1136 (1300)
Q Consensus 1057 ~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~vp 1136 (1300)
++|++++|++. .+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+++ + .+++|+|
T Consensus 327 ~~~l~~~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~----------~~i~~v~ 393 (556)
T PRK11819 327 AENLSKSFGDR--LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T----------VKLAYVD 393 (556)
T ss_pred EEeEEEEECCe--eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c----------eEEEEEe
Confidence 99999999753 599999999999999999999999999999999999999999999954 2 1699999
Q ss_pred CCC-CCCcc-cHHHhcCCCCC-----CCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccC
Q 000755 1137 QDP-TMFEG-TVRNNLDPLEE-----YKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKK 1209 (1300)
Q Consensus 1137 Q~~-~lf~g-Tvr~Nl~~~~~-----~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~ 1209 (1300)
|++ .++.. |+++|+..... ..+.+..++++.+++.+.. .......||||||||++||||++.+
T Consensus 394 q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG~~qrv~la~al~~~ 463 (556)
T PRK11819 394 QSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGD----------QQKKVGVLSGGERNRLHLAKTLKQG 463 (556)
T ss_pred CchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhH----------hcCchhhCCHHHHHHHHHHHHHhcC
Confidence 997 56654 99999864211 1233455677777764211 1223357899999999999999999
Q ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhc-cCEEEEEeC-CEEEE-ecChhhHHhc
Q 000755 1210 SKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVID-SDMVLLLSH-GIIEE-YDSPTKLLEN 1279 (1300)
Q Consensus 1210 ~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~-~D~v~vl~~-G~i~e-~g~~~~l~~~ 1279 (1300)
|++|||||||++||+.+...+.+.|++. . .|||+|||+++.+.. ||+|++|++ |++.+ .|++++++++
T Consensus 464 p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 464 GNVLLLDEPTNDLDVETLRALEEALLEF-P-GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHhC-C-CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 9999999999999999999999999986 3 489999999999987 999999986 78874 6788877754
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-64 Score=678.40 Aligned_cols=541 Identities=20% Similarity=0.193 Sum_probs=405.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 294 LFFSAWKEIVFTAILALLYTLANYVGPYLIDTFVQYLNGEREFKNEGYVLVSTFFVAKIVECLAQRHWMFRLQVAGIKMR 373 (1300)
Q Consensus 294 l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~g~~ir 373 (1300)
.++.+++.+++++++.++..++..+.|+++..+++.+-........+..+++.+++..++..++.....|...+++.++.
T Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~ 898 (1466)
T PTZ00265 819 EIFSYKKDVTIIALSILVAGGLYPVFALLYAKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVE 898 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667888888889999999999999999998553221111112223333444444455555566667788899999
Q ss_pred HHHHHHHHHHHhcCCchhhcC--CCHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 000755 374 SVLVSMVYNKGLTLSCQAKQS--YTSGEIINFMTVDAERIGDFGWY-MHDPWLVILQVSLALLI-LYKNLGLASIAALFA 449 (1300)
Q Consensus 374 ~~L~~~Iy~K~L~ls~~~~~~--~~~G~Ivnl~s~Dv~~i~~~~~~-~~~~~~~~l~i~~~l~l-L~~~lg~~~l~~l~~ 449 (1300)
..++..+|+|.++++...+++ +++|++++++++|++.+.+++.. +..+...++.+++++++ ++..+-++++ +
T Consensus 899 ~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~----~ 974 (1466)
T PTZ00265 899 KTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAV----L 974 (1466)
T ss_pred HHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H
Confidence 999999999999999998875 89999999999999999986543 33333333333333333 3333322221 1
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHH-----------------HHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHH
Q 000755 450 TVLIMLTNFPLGRLQENF-QDKL-----------------MGSKDKRMKVTSEILRNMRILKLQGWEMKFLSKIIELRKI 511 (1300)
Q Consensus 450 ~~l~~~~~~~~~k~~~~~-~~~~-----------------~~~~d~r~~~~~E~L~~ir~IK~~~~E~~f~~~i~~~R~~ 511 (1300)
++++.++...+.++.+.. .++. .+..++....++|.++||++||.|+.|+.+.+++.+.-+.
T Consensus 975 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~ 1054 (1466)
T PTZ00265 975 TGTYFIFMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDY 1054 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHH
Confidence 122222222233322211 1111 1123345678999999999999999999999988765443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 512 EAGWLKKFLYTGAMTSFVFWGA--PTFVSVATFGACMLLGIPLESGKILSALATFRILQEPIYNLPDTISMIIQTKVSLD 589 (1300)
Q Consensus 512 E~~~l~~~~~~~~~~~~~~~~~--p~~v~~~~f~~~~~~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vs~~ 589 (1300)
..+...+.....+....+.... ...+.++++|++++..+.++.|.+++++.++.....++..+...+..+.++++|++
T Consensus 1055 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ 1134 (1466)
T PTZ00265 1055 SNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFE 1134 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332222222111111111111 12344567888888899999999998887766666678889999999999999999
Q ss_pred HHHHHhcCCCCCc-ccccCCC---CCCCcceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHH
Q 000755 590 RIASFLCLDDLQS-DVVEKHP---RGSSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCI 665 (1300)
Q Consensus 590 RI~~fL~~~e~~~-~~~~~~~---~~~~~~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l 665 (1300)
|+.++++.++..+ ....... .....+.|+|+|++|+|+..++.++|+|+||+|++|+++||||+||||||||+++|
T Consensus 1135 ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL 1214 (1466)
T PTZ00265 1135 KYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLL 1214 (1466)
T ss_pred HHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 9999997653211 1000000 11223579999999999854456899999999999999999999999999999999
Q ss_pred hccccC------------------------------------------------------CccEEEEcCe----------
Q 000755 666 LGEVPK------------------------------------------------------ISGTLKLCGT---------- 681 (1300)
Q Consensus 666 lG~~~~------------------------------------------------------~~G~i~~~g~---------- 681 (1300)
+|+|+| ++|+|.++|.
T Consensus 1215 ~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~l 1294 (1466)
T PTZ00265 1215 MRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDL 1294 (1466)
T ss_pred HHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHH
Confidence 999998 6999999983
Q ss_pred ---EEEEecCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHHHHHc
Q 000755 682 ---KAYVAQSPWIQSGNIEDNILFGKP-MDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALY 757 (1300)
Q Consensus 682 ---~ayv~Q~~~l~~~Ti~eNI~fg~~-~~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLARAly 757 (1300)
++||+|+|.||++||+|||.+|+| .++++++++++.++++++++.||+|++|.+||+|.+|||||||||+|||||+
T Consensus 1295 R~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALl 1374 (1466)
T PTZ00265 1295 RNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALL 1374 (1466)
T ss_pred HhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHh
Confidence 699999999999999999999976 6889999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHhh--cCCcEEEEEecCCCccccCCEEEEEeC----CeEE-EecChHHHHh-
Q 000755 758 QDADIYLFDDPFSAVDAHTGSHLFKEVLLGL--LRSKTVIYVTHQVEFLPAADLILVMKD----GKIT-QAGKYNDILN- 829 (1300)
Q Consensus 758 ~~~~illLDep~saLD~~t~~~i~~~~~~~~--l~~~TvIlvtH~~~~l~~~d~i~~l~~----G~i~-~~g~~~~l~~- 829 (1300)
++|+||||||||||||+++++.|.+ .+... .+++|+|+||||++.+..||+|+||++ |+++ +.|+|+||++
T Consensus 1375 r~p~ILLLDEaTSaLD~~sE~~I~~-~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~ 1453 (1466)
T PTZ00265 1375 REPKILLLDEATSSLDSNSEKLIEK-TIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSV 1453 (1466)
T ss_pred cCCCEEEEeCcccccCHHHHHHHHH-HHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhc
Confidence 9999999999999999999988864 55555 368999999999999999999999999 9955 8999999998
Q ss_pred cCchHHHHHH
Q 000755 830 SGTDFMVLVG 839 (1300)
Q Consensus 830 ~~~~~~~l~~ 839 (1300)
.++.|.+++.
T Consensus 1454 ~~g~Y~~l~~ 1463 (1466)
T PTZ00265 1454 QDGVYKKYVK 1463 (1466)
T ss_pred CCChHHHHHh
Confidence 4788888764
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-67 Score=644.99 Aligned_cols=438 Identities=21% Similarity=0.286 Sum_probs=335.1
Q ss_pred eEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe-------------E
Q 000755 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------K 682 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-------------~ 682 (1300)
-|+++|++++|+ +.++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|. +
T Consensus 3 ~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i 79 (490)
T PRK10938 3 SLQISQGTFRLS---DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLV 79 (490)
T ss_pred eEEEEeEEEEcC---CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHh
Confidence 388999999996 246999999999999999999999999999999999999999999998652 5
Q ss_pred EEEecCCcC---------CCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHH
Q 000755 683 AYVAQSPWI---------QSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIA 753 (1300)
Q Consensus 683 ayv~Q~~~l---------~~~Ti~eNI~fg~~~~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLA 753 (1300)
+|++|++.. +..|++||+.++.. ++++.+++++..++.+.. .....+||||||||++||
T Consensus 80 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~la 147 (490)
T PRK10938 80 SDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVK-DPARCEQLAQQFGITALL-----------DRRFKYLSTGETRKTLLC 147 (490)
T ss_pred ceeccCcchhhcccchhhccccHHHhcccchh-HHHHHHHHHHHcCCHhhh-----------hCCcccCCHHHHHHHHHH
Confidence 899998743 14589999876522 234566666666664322 345578999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhh-cCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHHHhcC
Q 000755 754 RALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LRSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDILNSG 831 (1300)
Q Consensus 754 RAly~~~~illLDep~saLD~~t~~~i~~~~~~~~-l~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 831 (1300)
||+..+|++|||||||++||+.+.+.+.+. +..+ .+++|+|++||+++.+.. ||+|++|++|+++..|+++++....
T Consensus 148 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~ 226 (490)
T PRK10938 148 QALMSEPDLLILDEPFDGLDVASRQQLAEL-LASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQA 226 (490)
T ss_pred HHHHcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhcch
Confidence 999999999999999999999999888764 4443 347899999999998865 9999999999999988877654210
Q ss_pred chHHHHHHHHHHHhhhhcccCCCCccccccccccCCCccccccccccCccccccccchhhhhhhHHHHHHHHHHhhhhhh
Q 000755 832 TDFMVLVGAHQQALSALDSIEGGPVSERISMNKENGGMDTTNGVTMKEGNEDIQTDKVDEQYYIPSARELSRLVGVCKAP 911 (1300)
Q Consensus 832 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~~lp~grnr~s~D~v~~~~y~~~~r~l~rl~~~~~sp 911 (1300)
. . .++..
T Consensus 227 ~-----~---------------------------------------------------------------~~~~~----- 233 (490)
T PRK10938 227 L-----V---------------------------------------------------------------AQLAH----- 233 (490)
T ss_pred h-----h---------------------------------------------------------------hhhhh-----
Confidence 0 0 00000
Q ss_pred HHHHHHHHhhchHHHHHhcchHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHH
Q 000755 912 VIQHFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFHIAGAMEWLCFRLDMLSSLTFAFSLVLLISIPKGVIEPAI 991 (1300)
Q Consensus 912 ~~~~~~E~l~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~ 991 (1300)
.+
T Consensus 234 -----~~------------------------------------------------------------------------- 235 (490)
T PRK10938 234 -----SE------------------------------------------------------------------------- 235 (490)
T ss_pred -----hh-------------------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccCCCCCCCCCCceEEEEeeeeeeCCCCCcc
Q 000755 992 AGLAVTYGLNLNMLQAWVIWNLCNLENKIISVERILQYTCISSEPPLVIEESRPDCSWPTHGEVDILNLQVRYAPHLPLV 1071 (1300)
Q Consensus 992 ~gl~l~~~~~~~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~i~~~~v~~~y~~~~~~v 1071 (1300)
++.+. ..+.......+.. .+ +....++++|++++|++. .+
T Consensus 236 ---------------------------------~~~~~-~~~~~~~~~~~~~-~~---~~~~~l~~~~l~~~~~~~--~i 275 (490)
T PRK10938 236 ---------------------------------QLEGV-QLPEPDEPSARHA-LP---ANEPRIVLNNGVVSYNDR--PI 275 (490)
T ss_pred ---------------------------------ccCcc-ccCcccccccccc-cC---CCCceEEEeceEEEECCe--eE
Confidence 00000 0000000000000 00 123369999999999753 58
Q ss_pred eeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCC-CcceEEECCeecCC-CCHHHHhcccEEEcCCCCCCc---ccH
Q 000755 1072 LRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEP-TAGEIVIDGINISS-IGLHDLRSRLSIIPQDPTMFE---GTV 1146 (1300)
Q Consensus 1072 L~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p-~~G~I~idg~di~~-i~~~~lr~~i~~vpQ~~~lf~---gTv 1146 (1300)
|+|+||+|++||++||+||||||||||+++|+|+.+| ++|+|.++|.++.. ......|++++|+||++.++. .|+
T Consensus 276 l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~ 355 (490)
T PRK10938 276 LHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSV 355 (490)
T ss_pred EeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcH
Confidence 9999999999999999999999999999999998876 69999999987632 233456788999999986542 367
Q ss_pred HHhcCCC--C------CCC---HHHHHHHHHHcCCcH-HHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEE
Q 000755 1147 RNNLDPL--E------EYK---DEEIWEALDKCQLGD-EVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLV 1214 (1300)
Q Consensus 1147 r~Nl~~~--~------~~~---d~~i~~~l~~~~l~~-~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~~iLl 1214 (1300)
++++... . ... ++++.++++.+++.+ ... .....||||||||++|||||+.+|++||
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~~LSgGq~qrv~la~al~~~p~lll 424 (490)
T PRK10938 356 RNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTAD-----------APFHSLSWGQQRLALIVRALVKHPTLLI 424 (490)
T ss_pred HHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhcc-----------CchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 7775321 0 111 235677888888754 322 2335789999999999999999999999
Q ss_pred EeCCCcCCCHHHHHHHHHHHHHhcC-C-cEEEEEeCChhhhhc--cCEEEEEeCCEEEEec
Q 000755 1215 LDEATASVDTATDNLIQQTLRQHFS-D-CTVITIAHRITSVID--SDMVLLLSHGIIEEYD 1271 (1300)
Q Consensus 1215 LDEpTs~lD~~t~~~i~~~l~~~~~-~-~Tvi~iaHrl~~i~~--~D~v~vl~~G~i~e~g 1271 (1300)
|||||++||+.+.+.+.+.|++..+ + .|||+|||+++.+.. ||+|++|++|++++.-
T Consensus 425 LDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 425 LDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred EcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEee
Confidence 9999999999999999999998653 3 479999999999975 7999999999998754
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-67 Score=650.59 Aligned_cols=394 Identities=30% Similarity=0.390 Sum_probs=361.9
Q ss_pred hhHHHHHHHHHHhhhhhhHHHHHHHHhhchHHHHHhcchHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 894 YIPSARELSRLVGVCKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFHIAGAMEWLCFRLDMLSSLTFA 973 (1300)
Q Consensus 894 y~~~~r~l~rl~~~~~sp~~~~~~E~l~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~ 973 (1300)
..+..|+..+-.....+...++..|++.|++|||+.+.|+++..++.+..+++.+..+.......+......++..+...
T Consensus 313 ~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v 392 (709)
T COG2274 313 FQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSV 392 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666778888999999999999999999999999999999999999999888888888888887777666
Q ss_pred HHHHHH-HHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccCCCCCCCCCC
Q 000755 974 FSLVLL-ISIPKGVIEPAIAGLAVTYGLNLNMLQAWVIWNLCNLENKIISVERILQYTCISSEPPLVIEESRPDCSWPTH 1052 (1300)
Q Consensus 974 ~~~~~~-~~~~~g~~~~~~~gl~l~~~~~~~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~ 1052 (1300)
+.+++. ..+..|.++.|..-.+.+..-.+..++..++..+.+++....+.||+.+.++.|+|.+. +..+...|+.+
T Consensus 393 ~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~---~~~~~~~~~~~ 469 (709)
T COG2274 393 LILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEG---DKTLIHLPKLQ 469 (709)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc---ccccccccccC
Confidence 666653 45678899999999999999999999999999999999999999999999999888542 12234456678
Q ss_pred ceEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhccc
Q 000755 1053 GEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRL 1132 (1300)
Q Consensus 1053 g~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i 1132 (1300)
|.|+++||+|+|+++.|++|+|+|++|++||++||||+||||||||+|+|.|+++|++|+|++||.|++.++++.+|++|
T Consensus 470 g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~i 549 (709)
T COG2274 470 GEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQV 549 (709)
T ss_pred ceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhhe
Confidence 99999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCCcccHHHhcCCCC-CCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCC
Q 000755 1133 SIIPQDPTMFEGTVRNNLDPLE-EYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSK 1211 (1300)
Q Consensus 1133 ~~vpQ~~~lf~gTvr~Nl~~~~-~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~~ 1211 (1300)
+|||||+.+|+||||||+.... +.++|++++|++.++.+++|.++|.||||+|+|+|.|||||||||++|||||+++|+
T Consensus 550 g~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ 629 (709)
T COG2274 550 GYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPK 629 (709)
T ss_pred eEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCC
Confidence 9999999999999999998764 567899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhccCEEEEEeCCEEEEecChhhHHhcCCChHHHHHHHH
Q 000755 1212 VLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLVAEY 1291 (1300)
Q Consensus 1212 iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~~D~v~vl~~G~i~e~g~~~~l~~~~~~~f~~l~~~~ 1291 (1300)
|||||||||+||++|++.|.+.|.+...++|+|+||||++++..||||+||++|+|+|+|+|+|+++. +|.|+++++.+
T Consensus 630 ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~-~g~y~~l~~~q 708 (709)
T COG2274 630 ILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ-GGLYARLYQQQ 708 (709)
T ss_pred EEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHh-cChHHHHHhcc
Confidence 99999999999999999999999999889999999999999999999999999999999999999986 89999998754
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-66 Score=643.05 Aligned_cols=479 Identities=22% Similarity=0.306 Sum_probs=340.5
Q ss_pred eEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC--eEEEEecCCcCCC
Q 000755 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--TKAYVAQSPWIQS 693 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g--~~ayv~Q~~~l~~ 693 (1300)
-++++|++++|+. ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++ .++||+|+|+++.
T Consensus 4 ~i~~~nls~~~~~--~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~ 81 (552)
T TIGR03719 4 IYTMNRVSKVVPP--KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDP 81 (552)
T ss_pred EEEEeeEEEecCC--CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCC
Confidence 5899999999962 35799999999999999999999999999999999999999999999874 6899999999874
Q ss_pred -CCHHHHHhcCCC-------------------CC--------HHHHHHHHHHhcchH-------HHhhccCCCcccccCC
Q 000755 694 -GNIEDNILFGKP-------------------MD--------REKYDRVLEACSLKK-------DLEILSFGDQTVIGER 738 (1300)
Q Consensus 694 -~Ti~eNI~fg~~-------------------~~--------~~~~~~vl~~~~l~~-------dl~~l~~Gd~t~ige~ 738 (1300)
.|++|||.++.. .+ .+++.++++.++... -++.+ |.. .....
T Consensus 82 ~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~-~~~~~ 158 (552)
T TIGR03719 82 TKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL--RCP-PWDAD 158 (552)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC--CCC-cccCc
Confidence 599999987531 01 112344455554321 12222 221 23566
Q ss_pred CCCCCHHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCcccc-CCEEEEEeCCe
Q 000755 739 GINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPA-ADLILVMKDGK 817 (1300)
Q Consensus 739 g~~LSGGQkqRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~-~d~i~~l~~G~ 817 (1300)
..+||||||||++||||++.+|+++||||||++||+++...+.+ .+... ++|+|+|||+++++.. ||+|++|++|+
T Consensus 159 ~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~-~L~~~--~~tvIiisHd~~~~~~~~d~v~~l~~g~ 235 (552)
T TIGR03719 159 VTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQ-HLQEY--PGTVVAVTHDRYFLDNVAGWILELDRGR 235 (552)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHH-HHHhC--CCeEEEEeCCHHHHHhhcCeEEEEECCE
Confidence 78999999999999999999999999999999999999988865 45443 3699999999999876 89999999999
Q ss_pred EE-EecChHHHHhcCchHHHHHHHHHHHhhhhcccCCCCccccccccccCCCccccccccccCccccccccchhhhhhhH
Q 000755 818 IT-QAGKYNDILNSGTDFMVLVGAHQQALSALDSIEGGPVSERISMNKENGGMDTTNGVTMKEGNEDIQTDKVDEQYYIP 896 (1300)
Q Consensus 818 i~-~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~~lp~grnr~s~D~v~~~~y~~ 896 (1300)
++ +.|+++++.+.... ..+... .-|-+
T Consensus 236 i~~~~g~~~~~~~~~~~-------~~~~~~---------------------------------------------~~~~~ 263 (552)
T TIGR03719 236 GIPWEGNYSSWLEQKEK-------RLEQEE---------------------------------------------KEESA 263 (552)
T ss_pred EEEecCCHHHHHHHHHH-------HHHHHH---------------------------------------------HHHHH
Confidence 76 78999887642110 000000 00000
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHhhchHHHHHhcchHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 897 SARELSRLVGVCKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFHIAGAMEWLCFRLDMLSSLTFAFSL 976 (1300)
Q Consensus 897 ~~r~l~rl~~~~~sp~~~~~~E~l~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~ 976 (1300)
..+++++.. .|....
T Consensus 264 ~~~~~~~~~----------------------------------------------------~~~~~~------------- 278 (552)
T TIGR03719 264 RQKALKREL----------------------------------------------------EWVRSS------------- 278 (552)
T ss_pred HHHHHHHHH----------------------------------------------------HHHHhh-------------
Confidence 000111000 000000
Q ss_pred HHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccCCCCCCCCCCceEE
Q 000755 977 VLLISIPKGVIEPAIAGLAVTYGLNLNMLQAWVIWNLCNLENKIISVERILQYTCISSEPPLVIEESRPDCSWPTHGEVD 1056 (1300)
Q Consensus 977 ~~~~~~~~g~~~~~~~gl~l~~~~~~~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~i~ 1056 (1300)
..+. .+..+......+++.+. . +..++.......+...-+....++
T Consensus 279 ------~~~~--------------------------~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~l~ 324 (552)
T TIGR03719 279 ------PKAR--------------------------QAKSKARLARYEELLSQ-E-FQKRNETAEIYIPPGPRLGDKVIE 324 (552)
T ss_pred ------hhhH--------------------------HHHHHHHHHHHHhhhhh-c-ccccCCCceeecCCCCCCCCeEEE
Confidence 0000 00000001111222110 0 000000000000000001234699
Q ss_pred EEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEEEc
Q 000755 1057 ILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIP 1136 (1300)
Q Consensus 1057 ~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~vp 1136 (1300)
++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+++ + .+++|+|
T Consensus 325 ~~~l~~~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~----------~~i~~v~ 391 (552)
T TIGR03719 325 AENLSKGFGDK--LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T----------VKLAYVD 391 (552)
T ss_pred EeeEEEEECCe--eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c----------eEEEEEe
Confidence 99999999753 599999999999999999999999999999999999999999999954 2 1699999
Q ss_pred CCCC-CCc-ccHHHhcCCCC---CC--CHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccC
Q 000755 1137 QDPT-MFE-GTVRNNLDPLE---EY--KDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKK 1209 (1300)
Q Consensus 1137 Q~~~-lf~-gTvr~Nl~~~~---~~--~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~ 1209 (1300)
|++. ++. .|+++|+.... .. .+.+..++++.+++.+.. .......||||||||++|||||+.+
T Consensus 392 q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGe~qrv~la~al~~~ 461 (552)
T TIGR03719 392 QSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSD----------QQKKVGQLSGGERNRVHLAKTLKSG 461 (552)
T ss_pred CCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhH----------hcCchhhCCHHHHHHHHHHHHHhhC
Confidence 9973 565 49999986421 11 133455677777764211 1223457999999999999999999
Q ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhc-cCEEEEEeC-CEEEE-ecChhhHHh
Q 000755 1210 SKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVID-SDMVLLLSH-GIIEE-YDSPTKLLE 1278 (1300)
Q Consensus 1210 ~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~-~D~v~vl~~-G~i~e-~g~~~~l~~ 1278 (1300)
|++|||||||++||+.+.+.+.+.|++. ..|||+|||+++.+.. ||+|++|++ |++.+ .|+.++..+
T Consensus 462 p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 462 GNVLLLDEPTNDLDVETLRALEEALLEF--AGCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEE 531 (552)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHH
Confidence 9999999999999999999999999987 3589999999999987 999999997 58774 467766654
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-63 Score=575.27 Aligned_cols=540 Identities=24% Similarity=0.292 Sum_probs=409.6
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 290 LTKALFFSAWKEIVFTAILALLYTLANYVGPYLIDTFVQYLNGERE-FKNEGYVLVSTFFVAKIVECLAQRHWMFRLQVA 368 (1300)
Q Consensus 290 l~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~l~~~~~-~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~ 368 (1300)
+++.+.+ .|+.++++++++++..++....-.+-..+|....-... .....++-+++.=...+..+...+.-...++..
T Consensus 7 ~i~l~~~-~~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAiag~~~~f~~~~p~a~VR~~aI~Rt~~RY~ERlvsH~A 85 (573)
T COG4987 7 YLRLYKR-HKFGLLLGIVLAILTLLASIGLLTLSGWFISASAIAGLAYIFNVMLPSAGVRGLAILRTAARYVERLVSHDA 85 (573)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 4444555 77777777777777666655444444555543221111 111122223333333445566666666667778
Q ss_pred HHHHHHHHHHHHHHHHhcCCchhhcCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Q 000755 369 GIKMRSVLVSMVYNKGLTLSCQAKQSYTSGEIINFMTVDAERIGDFGWYMHDPWLVILQVSLALLI--LYKNLGLASIAA 446 (1300)
Q Consensus 369 g~~ir~~L~~~Iy~K~L~ls~~~~~~~~~G~Ivnl~s~Dv~~i~~~~~~~~~~~~~~l~i~~~l~l--L~~~lg~~~l~~ 446 (1300)
..++-+.|+..+|+|...+++....+.++|+++|++..|++.+++++.....+|...+-++.++.+ -+..++.+.+.+
T Consensus 86 tfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll~ 165 (573)
T COG4987 86 TFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLG 165 (573)
T ss_pred HHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 889999999999999999999999999999999999999999999999988888777655544433 366777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH---HH
Q 000755 447 LFATVLIMLTNFPLGRLQENFQDKLMGSKDKRMKVTSEILRNMRILKLQGWEMKFLSKIIELRKIEAGWLKKFLY---TG 523 (1300)
Q Consensus 447 l~~~~l~~~~~~~~~k~~~~~~~~~~~~~d~r~~~~~E~L~~ir~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~---~~ 523 (1300)
+...+..+++...+.+..++..++..+.+....+.+.|.+.|+...+++|.++.+.+.+++. |..|.+.... ..
T Consensus 166 ~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~---e~~~~~~q~k~~~~~ 242 (573)
T COG4987 166 LILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEAT---EASWLKAQRKQARFT 242 (573)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 77666666677777788888888888888888899999999999999999999998877543 3333332211 11
Q ss_pred HHHHHH-HHHHHHHHH-HHHHHHHHHhcCCcCH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCC
Q 000755 524 AMTSFV-FWGAPTFVS-VATFGACMLLGIPLES-GKILSALATFRILQEPIYNL-PDTISMIIQTKVSLDRIASFLCLDD 599 (1300)
Q Consensus 524 ~~~~~~-~~~~p~~v~-~~~f~~~~~~~~~Lt~-g~vft~lal~~~l~~pl~~l-p~~i~~~~~a~vs~~RI~~fL~~~e 599 (1300)
....+. ......++. .+.+.++..-.+..+. ..+...++.|..+ +++..+ |.++....++..|.+|+.+.++.++
T Consensus 243 ~~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~-eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~ 321 (573)
T COG4987 243 GLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAAL-EAFEPLAPGAFQHLGQVIASARRLNDILDQKP 321 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHH-HHHhhhcchhHHHhhHHHHHHHHHhhhccCCc
Confidence 111111 111111222 1112222122233332 2222222222222 333333 3788899999999999999987765
Q ss_pred CCcccccCCCCCCCcceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEc
Q 000755 600 LQSDVVEKHPRGSSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLC 679 (1300)
Q Consensus 600 ~~~~~~~~~~~~~~~~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~ 679 (1300)
......+..+. .+..++++|++|+|+. .+.++|+|+||++++||++||+|+||||||||+++|.|-++|++|+|..+
T Consensus 322 e~~~~~~~~~~--~~~~l~~~~vsF~y~~-~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~ 398 (573)
T COG4987 322 EVTFPDEQTAT--TGQALELRNVSFTYPG-QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLN 398 (573)
T ss_pred ccCCCccccCC--ccceeeeccceeecCC-CccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeEC
Confidence 44332111111 1227999999999984 45689999999999999999999999999999999999999999999999
Q ss_pred C-------------eEEEEecCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHH
Q 000755 680 G-------------TKAYVAQSPWIQSGNIEDNILFGKP-MDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGG 745 (1300)
Q Consensus 680 g-------------~~ayv~Q~~~l~~~Ti~eNI~fg~~-~~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGG 745 (1300)
| .+++++|.+.+|++|+|||+.+++| .++|+.+++++.++|++.++..|+|++|.+||.|..||||
T Consensus 399 g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGG 478 (573)
T COG4987 399 GVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGG 478 (573)
T ss_pred CcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCch
Confidence 8 3588999999999999999999998 5889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChH
Q 000755 746 QKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYN 825 (1300)
Q Consensus 746 QkqRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~~d~i~~l~~G~i~~~g~~~ 825 (1300)
||||++|||++++|++++||||||.+||+.|++++.+ .+...+++||+|+||||+..++.||+|++|++|+|++.|+|.
T Consensus 479 E~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~-ll~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~ 557 (573)
T COG4987 479 ERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLA-LLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHA 557 (573)
T ss_pred HHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHH-HHHHHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHH
Confidence 9999999999999999999999999999999999986 455667899999999999999999999999999999999999
Q ss_pred HHHhcCchHHHHH
Q 000755 826 DILNSGTDFMVLV 838 (1300)
Q Consensus 826 ~l~~~~~~~~~l~ 838 (1300)
+++.+++.|.++.
T Consensus 558 ~Ll~~~g~~~~l~ 570 (573)
T COG4987 558 ELLANNGRYKRLY 570 (573)
T ss_pred hhhccccHHHHHh
Confidence 9999888887764
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-65 Score=640.71 Aligned_cols=478 Identities=19% Similarity=0.277 Sum_probs=333.6
Q ss_pred EEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC--eEEEEecCCcCCCC
Q 000755 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--TKAYVAQSPWIQSG 694 (1300)
Q Consensus 617 I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g--~~ayv~Q~~~l~~~ 694 (1300)
|.++|++++|. ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++| .++|++|++..+..
T Consensus 2 i~i~nls~~~g---~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~ 78 (638)
T PRK10636 2 IVFSSLQIRRG---VRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQ 78 (638)
T ss_pred EEEEEEEEEeC---CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCC
Confidence 68999999995 35799999999999999999999999999999999999999999999987 47999997655556
Q ss_pred CHHHHHhcCCC-C--------------CHHHHHHHHH---H-------hcchHHHhhccCCCc-ccccCCCCCCCHHHHH
Q 000755 695 NIEDNILFGKP-M--------------DREKYDRVLE---A-------CSLKKDLEILSFGDQ-TVIGERGINLSGGQKQ 748 (1300)
Q Consensus 695 Ti~eNI~fg~~-~--------------~~~~~~~vl~---~-------~~l~~dl~~l~~Gd~-t~ige~g~~LSGGQkq 748 (1300)
|+.+++.-+.. + +...|..... . .....-++.+ |.. ........+|||||||
T Consensus 79 ~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--gl~~~~~~~~~~~LSgGerq 156 (638)
T PRK10636 79 PALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGL--GFSNEQLERPVSDFSGGWRM 156 (638)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC--CCCchhhcCchhhcCHHHHH
Confidence 76666542210 0 0001100000 0 0001112222 221 1234566789999999
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCcccc-CCEEEEEeCCeEE-EecChHH
Q 000755 749 RIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPA-ADLILVMKDGKIT-QAGKYND 826 (1300)
Q Consensus 749 RiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~-~~g~~~~ 826 (1300)
|++|||||..+|++|||||||++||+.+..++.+ .+... +.|+|+|||+++++.. ||+|++|++|++. +.|+|++
T Consensus 157 Rv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~-~L~~~--~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~ 233 (638)
T PRK10636 157 RLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEK-WLKSY--QGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSS 233 (638)
T ss_pred HHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHH-HHHhC--CCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEecCCHHH
Confidence 9999999999999999999999999999888754 44443 5799999999999876 9999999999996 6899988
Q ss_pred HHhcCchHHHHHHHHHHHhhhhcccCCCCccccccccccCCCccccccccccCccccccccchhhhhhhHHHHHHHHHHh
Q 000755 827 ILNSGTDFMVLVGAHQQALSALDSIEGGPVSERISMNKENGGMDTTNGVTMKEGNEDIQTDKVDEQYYIPSARELSRLVG 906 (1300)
Q Consensus 827 l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~~lp~grnr~s~D~v~~~~y~~~~r~l~rl~~ 906 (1300)
+........ .... +.|.+..+++++..
T Consensus 234 ~~~~~~~~~---~~~~-------------------------------------------------~~~~~~~~~~~~~~- 260 (638)
T PRK10636 234 FEVQRATRL---AQQQ-------------------------------------------------AMYESQQERVAHLQ- 260 (638)
T ss_pred HHHHHHHHH---HHHH-------------------------------------------------HHHHHHHHHHHHHH-
Confidence 764211000 0000 00101111111110
Q ss_pred hhhhhHHHHHHHHhhchHHHHHhcchHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 000755 907 VCKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFHIAGAMEWLCFRLDMLSSLTFAFSLVLLISIPKGV 986 (1300)
Q Consensus 907 ~~~sp~~~~~~E~l~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~~~~~~g~ 986 (1300)
.|..++.. ++.
T Consensus 261 ---------------------------~~i~r~~~------~a~------------------------------------ 271 (638)
T PRK10636 261 ---------------------------SYIDRFRA------KAT------------------------------------ 271 (638)
T ss_pred ---------------------------HHHHHhhh------hhh------------------------------------
Confidence 00000000 000
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccCCCCCCCCCCceEEEEeeeeeeCC
Q 000755 987 IEPAIAGLAVTYGLNLNMLQAWVIWNLCNLENKIISVERILQYTCISSEPPLVIEESRPDCSWPTHGEVDILNLQVRYAP 1066 (1300)
Q Consensus 987 ~~~~~~gl~l~~~~~~~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~i~~~~v~~~y~~ 1066 (1300)
.....+......+|+... . +.+......-..+++.-+....|+++|++++|++
T Consensus 272 -------------------------~~~~a~~r~~~l~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~ 324 (638)
T PRK10636 272 -------------------------KAKQAQSRIKMLERMELI-A-PAHVDNPFHFSFRAPESLPNPLLKMEKVSAGYGD 324 (638)
T ss_pred -------------------------hHHHHHHHHHHHHHhhcc-c-ccccCCceeEecCCCccCCCceEEEEeeEEEeCC
Confidence 000000011112222210 0 1100000000001111112346999999999975
Q ss_pred CCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEEEcCCC--CCCc-
Q 000755 1067 HLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDP--TMFE- 1143 (1300)
Q Consensus 1067 ~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~vpQ~~--~lf~- 1143 (1300)
..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+++. .+++|+||++ .+..
T Consensus 325 --~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~igy~~Q~~~~~l~~~ 391 (638)
T PRK10636 325 --RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKLGYFAQHQLEFLRAD 391 (638)
T ss_pred --eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEEEEecCcchhhCCcc
Confidence 35999999999999999999999999999999999999999999999741 2699999985 2333
Q ss_pred ccHHHhcCC-CCCCCHHHHHHHHHHcCCcH-HHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCcC
Q 000755 1144 GTVRNNLDP-LEEYKDEEIWEALDKCQLGD-EVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATAS 1221 (1300)
Q Consensus 1144 gTvr~Nl~~-~~~~~d~~i~~~l~~~~l~~-~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~~iLlLDEpTs~ 1221 (1300)
.|+.+++.. .....++++.++|+.+++.. ...+ ....||||||||++|||+++++|++|||||||++
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~-----------~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~ 460 (638)
T PRK10636 392 ESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTE-----------ETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNH 460 (638)
T ss_pred chHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcC-----------chhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 378887632 22233556778888888753 2222 2357899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhc-cCEEEEEeCCEEE-EecChhhHH
Q 000755 1222 VDTATDNLIQQTLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGIIE-EYDSPTKLL 1277 (1300)
Q Consensus 1222 lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~-e~g~~~~l~ 1277 (1300)
||+.+...+.+.|++. +.|||+|||++..+.. ||+|++|++|+++ ..|++++..
T Consensus 461 LD~~~~~~l~~~L~~~--~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 461 LDLDMRQALTEALIDF--EGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred CCHHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 9999999999999986 4599999999999987 9999999999997 678888874
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-62 Score=667.46 Aligned_cols=549 Identities=16% Similarity=0.154 Sum_probs=400.7
Q ss_pred chhHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 288 FKLTKALFFSAWKEI-VFTAILALLYTLANYVGPYLIDTFVQYLNGEREFKNEGYVLVSTFFVAKIVECLAQRHWMFRLQ 366 (1300)
Q Consensus 288 ~~l~~~l~~~~~~~~-~~~~l~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~ 366 (1300)
.+.++.+++..++.. ++.+++.++..++....|+.++...+............+.+ .++++..++..++.....+...
T Consensus 952 ~~~y~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~~-~iy~~l~i~~~~~~~~~~~~~~ 1030 (1522)
T TIGR00957 952 LSVYWDYMKAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSLRL-SVYGALGILQGFAVFGYSMAVS 1030 (1522)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcchHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 345555665543322 23333444455566677877776665321110011111111 1111222222222222334445
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCchhhcCCCHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 367 VAGIKMRSVLVSMVYNKGLTLSCQAKQSYTSGEIINFMTVDAERIGDFGW-YMHDPWLVILQVSLALLILYKNLGLASIA 445 (1300)
Q Consensus 367 ~~g~~ir~~L~~~Iy~K~L~ls~~~~~~~~~G~Ivnl~s~Dv~~i~~~~~-~~~~~~~~~l~i~~~l~lL~~~lg~~~l~ 445 (1300)
..+.+.-..+...+|++.++.+...+++.++|+|+|++++|++.+++.+. .+..+...++.++.++++++....+.+++
T Consensus 1031 ~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~ 1110 (1522)
T TIGR00957 1031 IGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVI 1110 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788888889999999999999999999999999999999999998654 34444555555555555444333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 446 ALFATVLIMLTNFPLGRLQENFQDKLMGSKDKRMKVTSEILRNMRILKLQGWEMKFLSKIIELRKIEAGWLKKFLYTGAM 525 (1300)
Q Consensus 446 ~l~~~~l~~~~~~~~~k~~~~~~~~~~~~~d~r~~~~~E~L~~ir~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~~~~~ 525 (1300)
.+.++++...+..++.+..+..++...+.++...+.++|.++|+++||.|++|+.|.++..+..+...+..........+
T Consensus 1111 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 1190 (1522)
T TIGR00957 1111 IPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRW 1190 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23233333333333444444444555556677789999999999999999999999888766544433322211111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh-cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc
Q 000755 526 TSFVFWGAPTFVSVATFGACMLL-GIPLESGKILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIASFLCLDDLQSDV 604 (1300)
Q Consensus 526 ~~~~~~~~p~~v~~~~f~~~~~~-~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~ 604 (1300)
..........+ .++..+.+.+. .+.+++|.+..++.+...+..|+..+...+..+.++.+|.+||.++++.+++.+..
T Consensus 1191 ~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~ 1269 (1522)
T TIGR00957 1191 LAVRLECVGNC-IVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQ 1269 (1522)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccc
Confidence 11111111111 11222233333 46799999999999999999999999999999999999999999999765433211
Q ss_pred c-cCCCCC--CCcceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe
Q 000755 605 V-EKHPRG--SSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT 681 (1300)
Q Consensus 605 ~-~~~~~~--~~~~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~ 681 (1300)
. ...+.. +.++.|+|+|++|+|+++ .+++|+|+||+|++||++||||++|||||||+++|+|+++|++|+|.++|.
T Consensus 1270 ~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~ 1348 (1522)
T TIGR00957 1270 IQETAPPSGWPPRGRVEFRNYCLRYRED-LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGL 1348 (1522)
T ss_pred ccCCCCCCCCCCCCcEEEEEEEEEeCCC-CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCE
Confidence 1 111111 234679999999999743 357999999999999999999999999999999999999999999999983
Q ss_pred -------------EEEEecCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHH
Q 000755 682 -------------KAYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQ 748 (1300)
Q Consensus 682 -------------~ayv~Q~~~l~~~Ti~eNI~fg~~~~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkq 748 (1300)
++||||+|.+|+|||||||....++++++.+++++.|++++.++.+|+|++|.+||+|.+|||||||
T Consensus 1349 dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQ 1428 (1522)
T TIGR00957 1349 NIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQ 1428 (1522)
T ss_pred EccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHH
Confidence 6999999999999999999843478999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHH
Q 000755 749 RIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDIL 828 (1300)
Q Consensus 749 RiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~ 828 (1300)
|++||||++++|+|+|||||||+||++|++.| ++.++...+++|+|+||||++.+..||+|+||++|+|++.|+|+||+
T Consensus 1429 rl~LARALLr~~~ILiLDEaTSalD~~Te~~I-q~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl 1507 (1522)
T TIGR00957 1429 LVCLARALLRKTKILVLDEATAAVDLETDNLI-QSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLL 1507 (1522)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHH-HHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999998777 55677777899999999999999999999999999999999999999
Q ss_pred hcCchHHHHHHH
Q 000755 829 NSGTDFMVLVGA 840 (1300)
Q Consensus 829 ~~~~~~~~l~~~ 840 (1300)
+.++.|.+++.+
T Consensus 1508 ~~~~~f~~l~~~ 1519 (1522)
T TIGR00957 1508 QQRGIFYSMAKD 1519 (1522)
T ss_pred hCCCHHHHHHHH
Confidence 888888887653
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-64 Score=563.45 Aligned_cols=457 Identities=26% Similarity=0.433 Sum_probs=357.5
Q ss_pred ceEEEEeEEEEecCC-CCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccC-----CccEEEEcC--------
Q 000755 615 TAIEIVDGNFAWDIS-SNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK-----ISGTLKLCG-------- 680 (1300)
Q Consensus 615 ~~I~i~~~~fs~~~~-~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~-----~~G~i~~~g-------- 680 (1300)
.-++++|.+.++..+ ....++++|||+|++||.+|+||+||||||--.+.++|+++. -+|+|..+|
T Consensus 5 ~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se 84 (534)
T COG4172 5 PLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASE 84 (534)
T ss_pred cceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCH
Confidence 357889988888633 345789999999999999999999999999999999999975 368998877
Q ss_pred ---------eEEEEecCCcC-CC--CCHHHH----HhcCCCCC----HHHHHHHHHHhcchHHHhhccCCCcccccCCCC
Q 000755 681 ---------TKAYVAQSPWI-QS--GNIEDN----ILFGKPMD----REKYDRVLEACSLKKDLEILSFGDQTVIGERGI 740 (1300)
Q Consensus 681 ---------~~ayv~Q~~~l-~~--~Ti~eN----I~fg~~~~----~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~ 740 (1300)
+|++++|+|-- .| -||... |...+.++ +++..+.++..++.+-- ..+..-..
T Consensus 85 ~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~--------~rl~~yPH 156 (534)
T COG4172 85 RQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPE--------KRLDAYPH 156 (534)
T ss_pred HHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchh--------hhhhhCCc
Confidence 47999999964 22 355444 44444333 34445555555554321 12233446
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEecCCCcccc-CCEEEEEeCCe
Q 000755 741 NLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL--RSKTVIYVTHQVEFLPA-ADLILVMKDGK 817 (1300)
Q Consensus 741 ~LSGGQkqRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l--~~~TvIlvtH~~~~l~~-~d~i~~l~~G~ 817 (1300)
.|||||||||.||.||..+|++||-||||.|||..+..+|.+ ++..+- .|-.+++|||++..... ||+|+||.+|+
T Consensus 157 eLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~-Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ 235 (534)
T COG4172 157 ELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILD-LLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGE 235 (534)
T ss_pred ccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHH-HHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccE
Confidence 899999999999999999999999999999999999999975 454432 37899999999999887 99999999999
Q ss_pred EEEecChHHHHhcCchHHHHHHHHHHHhhhhcccCCCCccccccccccCCCccccccccccCccccccccchhhhhhhHH
Q 000755 818 ITQAGKYNDILNSGTDFMVLVGAHQQALSALDSIEGGPVSERISMNKENGGMDTTNGVTMKEGNEDIQTDKVDEQYYIPS 897 (1300)
Q Consensus 818 i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~~lp~grnr~s~D~v~~~~y~~~ 897 (1300)
+++.|+.+++......- |-
T Consensus 236 ivE~~~t~~lF~~PqHp-----------------------------------------------------------YT-- 254 (534)
T COG4172 236 IVETGTTETLFAAPQHP-----------------------------------------------------------YT-- 254 (534)
T ss_pred EeecCcHHHHhhCCCCh-----------------------------------------------------------HH--
Confidence 99999988876532210 00
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhhchHHHHHhcchHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 898 ARELSRLVGVCKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFHIAGAMEWLCFRLDMLSSLTFAFSLV 977 (1300)
Q Consensus 898 ~r~l~rl~~~~~sp~~~~~~E~l~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~ 977 (1300)
|.
T Consensus 255 -r~----------------------------------------------------------------------------- 256 (534)
T COG4172 255 -RK----------------------------------------------------------------------------- 256 (534)
T ss_pred -HH-----------------------------------------------------------------------------
Confidence 00
Q ss_pred HHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccCCCCCCCCCCceEEE
Q 000755 978 LLISIPKGVIEPAIAGLAVTYGLNLNMLQAWVIWNLCNLENKIISVERILQYTCISSEPPLVIEESRPDCSWPTHGEVDI 1057 (1300)
Q Consensus 978 ~~~~~~~g~~~~~~~gl~l~~~~~~~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~i~~ 1057 (1300)
. +..||. ...+|..-....-++.
T Consensus 257 ---------------------------------------------------L--l~aeP~----g~~~p~~~~~~~ll~~ 279 (534)
T COG4172 257 ---------------------------------------------------L--LAAEPS----GDPPPLPEDAPVLLEV 279 (534)
T ss_pred ---------------------------------------------------H--HhcCCC----CCCCCCCCCCCceEEe
Confidence 0 001221 1111111123346899
Q ss_pred EeeeeeeCCCC---------CcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHH-
Q 000755 1058 LNLQVRYAPHL---------PLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHD- 1127 (1300)
Q Consensus 1058 ~~v~~~y~~~~---------~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~- 1127 (1300)
+|+.+.|+-+. -.+.++|||++++||.+||||.||||||||-.+|+|+++++ |+|.++|.+|...+.++
T Consensus 280 ~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~m 358 (534)
T COG4172 280 EDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEM 358 (534)
T ss_pred cceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhh
Confidence 99999985321 24789999999999999999999999999999999999987 99999999999888766
Q ss_pred --HhcccEEEcCCCC--CC-cccHHHhcC----CCC-CC----CHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCC
Q 000755 1128 --LRSRLSIIPQDPT--MF-EGTVRNNLD----PLE-EY----KDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWS 1193 (1300)
Q Consensus 1128 --lr~~i~~vpQ~~~--lf-~gTvr~Nl~----~~~-~~----~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LS 1193 (1300)
+|+++-+|+|||+ |- ..||.+-+. ... .. .|+.+.++|+.+||+..... .....+|
T Consensus 359 rplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~----------RYPhEFS 428 (534)
T COG4172 359 RPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRN----------RYPHEFS 428 (534)
T ss_pred hhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhh----------cCCcccC
Confidence 6889999999996 22 237766552 111 22 35568889999999765433 2346789
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc--CCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEe
Q 000755 1194 MGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF--SDCTVITIAHRITSVID-SDMVLLLSHGIIEEY 1270 (1300)
Q Consensus 1194 gGqrQrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~ 1270 (1300)
||||||++||||++-+|++++||||||+||..-...|.+.+++.. .+-+-++||||+..+.. ||+|+||.+|+|+|+
T Consensus 429 GGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~ 508 (534)
T COG4172 429 GGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQ 508 (534)
T ss_pred cchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeee
Confidence 999999999999999999999999999999999999999999864 36799999999999988 999999999999999
Q ss_pred cChhhHHhcCCChHHHH
Q 000755 1271 DSPTKLLENKSSSFAQL 1287 (1300)
Q Consensus 1271 g~~~~l~~~~~~~f~~l 1287 (1300)
|+.+++++++...|.+-
T Consensus 509 G~~~~if~~P~~~YT~~ 525 (534)
T COG4172 509 GPTEAVFANPQHEYTRA 525 (534)
T ss_pred CCHHHHhcCCCcHHHHH
Confidence 99999999998877653
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-64 Score=628.05 Aligned_cols=392 Identities=31% Similarity=0.432 Sum_probs=337.9
Q ss_pred hhHHHHHHHHHHhhhhhhHHHHHHHHhhchHHHHHhcchHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 894 YIPSARELSRLVGVCKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFHIAGAMEWLCFRLDMLSSLTFA 973 (1300)
Q Consensus 894 y~~~~r~l~rl~~~~~sp~~~~~~E~l~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~ 973 (1300)
+.+..++..+......+.+.+.+.|+++|.++||+|+.++...+++.+..+...+...........+.....++..+...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (567)
T COG1132 172 LARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTV 251 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345677777777788999999999999999999999997777766666655554433333333333333344333333
Q ss_pred HHHHH-HHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccCCCCCCCCCC
Q 000755 974 FSLVL-LISIPKGVIEPAIAGLAVTYGLNLNMLQAWVIWNLCNLENKIISVERILQYTCISSEPPLVIEESRPDCSWPTH 1052 (1300)
Q Consensus 974 ~~~~~-~~~~~~g~~~~~~~gl~l~~~~~~~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~ 1052 (1300)
+.+.+ ...+..+.++.|.+..++.|...+..++..+...+..++....|.||+.++.+.+++.. +...+ .++..
T Consensus 252 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~---~~~~~--~~~~~ 326 (567)
T COG1132 252 LVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVE---DPPDP--LKDTI 326 (567)
T ss_pred HHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccc---CCCCC--CCCCC
Confidence 33222 23345677889999999999999999999999999999999999999999998755422 11111 23456
Q ss_pred ceEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhccc
Q 000755 1053 GEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRL 1132 (1300)
Q Consensus 1053 g~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i 1132 (1300)
+.|+++||+|+|+++ +++|+|+||+|++||++|||||||||||||+++|+|+++|++|+|.+||+||++++..++|++|
T Consensus 327 ~~I~f~~vsf~y~~~-~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I 405 (567)
T COG1132 327 GSIEFENVSFSYPGK-KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRI 405 (567)
T ss_pred CeEEEEEEEEEcCCC-CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhc
Confidence 889999999999863 4699999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCCcccHHHhcCCCCC-CCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCC
Q 000755 1133 SIIPQDPTMFEGTVRNNLDPLEE-YKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSK 1211 (1300)
Q Consensus 1133 ~~vpQ~~~lf~gTvr~Nl~~~~~-~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~~ 1211 (1300)
++|||||.+|++||++|+.+..+ .+|+|++++++.++++|++.++|+|+||.|||+|.+||||||||+|||||++++|+
T Consensus 406 ~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ 485 (567)
T COG1132 406 GIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPP 485 (567)
T ss_pred cEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998865 79999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhccCEEEEEeCCEEEEecChhhHHhcCCChHHHHHHHH
Q 000755 1212 VLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLVAEY 1291 (1300)
Q Consensus 1212 iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~~D~v~vl~~G~i~e~g~~~~l~~~~~~~f~~l~~~~ 1291 (1300)
|||||||||+||++|++.|++.+++..+++|+|+||||++++.+||+|+||++|+|+|+|+|+||+++ +|.|++||+++
T Consensus 486 ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~-~g~y~~l~~~~ 564 (567)
T COG1132 486 ILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAK-GGLYARLYQAQ 564 (567)
T ss_pred EEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHc-CCHHHHHHHHh
Confidence 99999999999999999999999988788999999999999999999999999999999999999986 89999999987
Q ss_pred h
Q 000755 1292 T 1292 (1300)
Q Consensus 1292 ~ 1292 (1300)
.
T Consensus 565 ~ 565 (567)
T COG1132 565 G 565 (567)
T ss_pred h
Confidence 5
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-62 Score=564.07 Aligned_cols=520 Identities=21% Similarity=0.261 Sum_probs=414.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcch---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 000755 313 TLANYVGPYLIDTFVQYLNGEREFK---NEGYVLVSTFFVAKIVECLAQRHWMFRLQVAGIKMRSVLVSMVYNKGLTLSC 389 (1300)
Q Consensus 313 ~~~~~~~P~ll~~li~~l~~~~~~~---~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~g~~ir~~L~~~Iy~K~L~ls~ 389 (1300)
-......|++++..++.++..+..+ ......+.+++++.+..+.+.-...+....+..++-......+|++.+.++.
T Consensus 43 K~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~ 122 (591)
T KOG0057|consen 43 KILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDL 122 (591)
T ss_pred hHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 4566778999999999886322211 1233455666677777777777777777788888888888999999999999
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 000755 390 QAKQSYTSGEIINFMTVDAERIGDFGW-YMHDPWLVILQVSLALLILYKNLGLASIAALF-ATVLIMLTNFPLGRLQENF 467 (1300)
Q Consensus 390 ~~~~~~~~G~Ivnl~s~Dv~~i~~~~~-~~~~~~~~~l~i~~~l~lL~~~lg~~~l~~l~-~~~l~~~~~~~~~k~~~~~ 467 (1300)
..+.+..+|++.+.|..-...|.++.. .+..+....+.+.+....+++..|.+..+... .+.....+.....+...++
T Consensus 123 ~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~f 202 (591)
T KOG0057|consen 123 SFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNRF 202 (591)
T ss_pred HhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHHH
Confidence 999999999999999988888888754 34555666677888888899999976544333 3333334455567788889
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 000755 468 QDKLMGSKDKRMKVTSEILRNMRILKLQGWEMKFLSKIIE-LRKIEAGWLKKFLYTGAMTSFVFWGAPT-FVSVATFGAC 545 (1300)
Q Consensus 468 ~~~~~~~~d~r~~~~~E~L~~ir~IK~~~~E~~f~~~i~~-~R~~E~~~l~~~~~~~~~~~~~~~~~p~-~v~~~~f~~~ 545 (1300)
++++.++.++-.+..-+.|.|..+||.|+-|+...++... +++.|...++....+...+..--....+ .+.++..+..
T Consensus 203 R~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~~~ 282 (591)
T KOG0057|consen 203 RKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIMVLGSN 282 (591)
T ss_pred HHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999998888755 3555544433332222211111111111 1112222222
Q ss_pred HHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCCCCCcceEEEEeEEEE
Q 000755 546 MLLGIPLESGKILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIASFLCLDDLQSDVVEKHPRGSSETAIEIVDGNFA 625 (1300)
Q Consensus 546 ~~~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~~~~~~~~~~I~i~~~~fs 625 (1300)
-+.++.+|.+.+....+++.+|..|+..+...+..+.|+..-..-+...+..++... ....+....++.|+|+|++|+
T Consensus 283 gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~--~~~~~i~~~~~~I~F~dV~f~ 360 (591)
T KOG0057|consen 283 GIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQ--EAALPIELFGGSIEFDDVHFS 360 (591)
T ss_pred hhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhh--hccCCcccCCCcEEEEeeEEE
Confidence 345668999999999999999999999999999999988877765544332222111 111222334557999999999
Q ss_pred ecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe-------------EEEEecCCcCC
Q 000755 626 WDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------KAYVAQSPWIQ 692 (1300)
Q Consensus 626 ~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-------------~ayv~Q~~~l~ 692 (1300)
|++ ++++|+++||+|++||++||+|+|||||||++++|+++++ ++|+|.++|. |||||||..||
T Consensus 361 y~~--k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LF 437 (591)
T KOG0057|consen 361 YGP--KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLF 437 (591)
T ss_pred eCC--CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCccccc
Confidence 973 4679999999999999999999999999999999999999 9999999994 69999999999
Q ss_pred CCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecCCCC
Q 000755 693 SGNIEDNILFGKP-MDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSA 771 (1300)
Q Consensus 693 ~~Ti~eNI~fg~~-~~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLARAly~~~~illLDep~sa 771 (1300)
|+||.+||.+|++ ..+|+..++++..++++-+..+|+|++|.+||+|..|||||||||+||||+++||+|+++|||||+
T Consensus 438 ndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~ 517 (591)
T KOG0057|consen 438 NDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSA 517 (591)
T ss_pred chhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccc
Confidence 9999999999998 578899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHhcCchHHHHH
Q 000755 772 VDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSGTDFMVLV 838 (1300)
Q Consensus 772 LD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~l~ 838 (1300)
||.+|++.+++. ++..+.+||+|+|.||+..++.||+|++++||++.+.|+|+|++..++.|.++.
T Consensus 518 LD~~TE~~i~~~-i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~~s~~~~~~w 583 (591)
T KOG0057|consen 518 LDSETEREILDM-IMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAPSELYADLW 583 (591)
T ss_pred cchhhHHHHHHH-HHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhhhhhHHHHHh
Confidence 999999999864 566788999999999999999999999999999999999999999777776664
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-63 Score=626.86 Aligned_cols=476 Identities=21% Similarity=0.306 Sum_probs=330.3
Q ss_pred eEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe--EEEEecCCcC-C
Q 000755 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--KAYVAQSPWI-Q 692 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~--~ayv~Q~~~l-~ 692 (1300)
.|+++|++++|+ ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|. ++|++|.+.. .
T Consensus 3 ~l~i~~ls~~~~---~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~ 79 (635)
T PRK11147 3 LISIHGAWLSFS---DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNV 79 (635)
T ss_pred EEEEeeEEEEeC---CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCC
Confidence 488999999996 357999999999999999999999999999999999999999999999874 6899998743 3
Q ss_pred CCCHHHHHhcCCCC-------------------CHHH---HHHH---HHH-------hcchHHHhhccCCCcccccCCCC
Q 000755 693 SGNIEDNILFGKPM-------------------DREK---YDRV---LEA-------CSLKKDLEILSFGDQTVIGERGI 740 (1300)
Q Consensus 693 ~~Ti~eNI~fg~~~-------------------~~~~---~~~v---l~~-------~~l~~dl~~l~~Gd~t~ige~g~ 740 (1300)
.+++.+++..+... ..+. +..+ ++. .....-++.+ |.. ......
T Consensus 80 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gl~--~~~~~~ 155 (635)
T PRK11147 80 EGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQL--GLD--PDAALS 155 (635)
T ss_pred CCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhC--CCC--CCCchh
Confidence 46888776432110 0000 0000 000 0011112222 221 145567
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCcccc-CCEEEEEeCCeEE
Q 000755 741 NLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPA-ADLILVMKDGKIT 819 (1300)
Q Consensus 741 ~LSGGQkqRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~ 819 (1300)
+|||||||||+|||||+.+|+||||||||++||+.+..++.+ .+..+ +.|+|+|||+++++.. ||+|++|++|+++
T Consensus 156 ~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~-~L~~~--~~tvlivsHd~~~l~~~~d~i~~L~~G~i~ 232 (635)
T PRK11147 156 SLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEG-FLKTF--QGSIIFISHDRSFIRNMATRIVDLDRGKLV 232 (635)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHH-HHHhC--CCEEEEEeCCHHHHHHhcCeEEEEECCEEE
Confidence 899999999999999999999999999999999999888764 45544 3699999999999976 9999999999997
Q ss_pred -EecChHHHHhcCchHHHHHHHHHHHhhhhcccCCCCccccccccccCCCccccccccccCccccccccchhhhhhhHHH
Q 000755 820 -QAGKYNDILNSGTDFMVLVGAHQQALSALDSIEGGPVSERISMNKENGGMDTTNGVTMKEGNEDIQTDKVDEQYYIPSA 898 (1300)
Q Consensus 820 -~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~~lp~grnr~s~D~v~~~~y~~~~ 898 (1300)
+.|+|++++......... .. .-|....
T Consensus 233 ~~~g~~~~~~~~~~~~~~~---~~-------------------------------------------------~~~~~~~ 260 (635)
T PRK11147 233 SYPGNYDQYLLEKEEALRV---EE-------------------------------------------------LQNAEFD 260 (635)
T ss_pred EecCCHHHHHHHHHHHHHH---HH-------------------------------------------------HHHHHHH
Confidence 579998876532110000 00 0000000
Q ss_pred HHHHHHHhhhhhhHHHHHHHHhhchHHHHHhcchHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 899 RELSRLVGVCKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFHIAGAMEWLCFRLDMLSSLTFAFSLVL 978 (1300)
Q Consensus 899 r~l~rl~~~~~sp~~~~~~E~l~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~ 978 (1300)
++++++. .+.++. .++...
T Consensus 261 ~~~~~~~----------------------------~~~~~~-------~~a~~~-------------------------- 279 (635)
T PRK11147 261 RKLAQEE----------------------------VWIRQG-------IKARRT-------------------------- 279 (635)
T ss_pred HHHHHHH----------------------------HHHHhh-------hhhhhh--------------------------
Confidence 1111100 000000 000000
Q ss_pred HHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcCCCCCCCccccCCCCCCCCCCceEEE
Q 000755 979 LISIPKGVIEPAIAGLAVTYGLNLNMLQAWVIWNLCNLENKIISVERILQ-YTCISSEPPLVIEESRPDCSWPTHGEVDI 1057 (1300)
Q Consensus 979 ~~~~~~g~~~~~~~gl~l~~~~~~~~~~~~~~~~~~~le~~~~sveRi~~-~~~~~~e~~~~~~~~~~~~~wp~~g~i~~ 1057 (1300)
.. .......+++.. -.. +.+......-..++..-+....|++
T Consensus 280 --------------------------------~~----~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~ 322 (635)
T PRK11147 280 --------------------------------RN----EGRVRALKALRRERSE-RREVMGTAKMQVEEASRSGKIVFEM 322 (635)
T ss_pred --------------------------------hH----HHHHHHHHHhhhhhcc-ccccCCceeEEeCCCCCCCCceEEE
Confidence 00 000000111110 000 0000000000001111112335899
Q ss_pred EeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEEEcC
Q 000755 1058 LNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQ 1137 (1300)
Q Consensus 1058 ~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~vpQ 1137 (1300)
+|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+ |.++ +++|++|
T Consensus 323 ~~l~~~~~~~--~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i~y~~q 389 (635)
T PRK11147 323 ENVNYQIDGK--QLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EVAYFDQ 389 (635)
T ss_pred eeeEEEECCe--EEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EEEEEeC
Confidence 9999999753 5999999999999999999999999999999999999999999999 4332 5999999
Q ss_pred CC-CCCcc-cHHHhcCCCC-CC--C--HHHHHHHHHHcCCcH-HHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccC
Q 000755 1138 DP-TMFEG-TVRNNLDPLE-EY--K--DEEIWEALDKCQLGD-EVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKK 1209 (1300)
Q Consensus 1138 ~~-~lf~g-Tvr~Nl~~~~-~~--~--d~~i~~~l~~~~l~~-~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~ 1209 (1300)
++ .+++. ||.+|+.... .. . +.++.+.++.+++.. ...+ ....||||||||++||||++.+
T Consensus 390 ~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~~LSgGekqRl~la~al~~~ 458 (635)
T PRK11147 390 HRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMT-----------PVKALSGGERNRLLLARLFLKP 458 (635)
T ss_pred cccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhC-----------hhhhCCHHHHHHHHHHHHHhcC
Confidence 86 46654 9999986421 11 1 345667787777642 2222 2356899999999999999999
Q ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhc-cCEEEEEe-CCEEEEe-cChhhHH
Q 000755 1210 SKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVID-SDMVLLLS-HGIIEEY-DSPTKLL 1277 (1300)
Q Consensus 1210 ~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~-~D~v~vl~-~G~i~e~-g~~~~l~ 1277 (1300)
|++|||||||++||+.+...+.+.|++. ++|||+|||+.+.+.. ||+|++|+ +|++.++ |+..+.+
T Consensus 459 p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~ 527 (635)
T PRK11147 459 SNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDAR 527 (635)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHH
Confidence 9999999999999999999999999876 5699999999999987 99999998 8999875 5666654
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-61 Score=655.04 Aligned_cols=548 Identities=15% Similarity=0.156 Sum_probs=382.2
Q ss_pred chhHHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 288 FKLTKALFFSAWKE--IVFTAILALLYTLANYVGPYLIDTFVQYLNGEREFKNEGYVLVSTFFVAKIVECLAQRHWMFRL 365 (1300)
Q Consensus 288 ~~l~~~l~~~~~~~--~~~~~l~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~ 365 (1300)
.+.++.+++..+.. +++.+++.++..++....|+.++...+....... ....| ++++++..++..++.....+..
T Consensus 901 ~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~-~~~~~--~~i~~~l~~~~~i~~~~~~~~~ 977 (1622)
T PLN03130 901 WKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPKTH-GPLFY--NLIYALLSFGQVLVTLLNSYWL 977 (1622)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC-chhHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555543322 1222333334455556667777766654222111 11111 1122222233333333333445
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCchhhcCCCHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 366 QVAGIKMRSVLVSMVYNKGLTLSCQAKQSYTSGEIINFMTVDAERIGDFGW-YMHDPWLVILQVSLALLILYKNLGLASI 444 (1300)
Q Consensus 366 ~~~g~~ir~~L~~~Iy~K~L~ls~~~~~~~~~G~Ivnl~s~Dv~~i~~~~~-~~~~~~~~~l~i~~~l~lL~~~lg~~~l 444 (1300)
.+.+.+.-..+...+|++.++.+...++++++|+|+|++++|++.+++... .+.......+.++.+++++.....+..+
T Consensus 978 ~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~~~~ 1057 (1622)
T PLN03130 978 IMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISLW 1057 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888899999999999999999999999999999999999988643 3444444444444444333222112222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 445 AALFATVLIMLTNFPLGRLQENFQDKLMGSKDKRMKVTSEILRNMRILKLQGWEMKFLSKIIELRKIEAGWLKKFLYTGA 524 (1300)
Q Consensus 445 ~~l~~~~l~~~~~~~~~k~~~~~~~~~~~~~d~r~~~~~E~L~~ir~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~~~~ 524 (1300)
+.+.++++++.+..+..+..+..++..+..+....+.++|.++|+++||.|++|+.|.++..+..+...+..........
T Consensus 1058 ~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 1137 (1622)
T PLN03130 1058 AIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSNR 1137 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222222333333444444455566677889999999999999999998887765544433322111110001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-cCCcC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 000755 525 MTSFVFWGAPTFVSVATFGACMLL-GIPLE-----SGKILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIASFLCLD 598 (1300)
Q Consensus 525 ~~~~~~~~~p~~v~~~~f~~~~~~-~~~Lt-----~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~ 598 (1300)
+..+.......++ +...+.+.+. ++... ++.+-.++++...+..++..+...+..+.++.+|++|+.++++.|
T Consensus 1138 wl~~~l~~~~~~~-i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~ 1216 (1622)
T PLN03130 1138 WLAIRLETLGGLM-IWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLP 1216 (1622)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 1111000011111 1111122222 22111 233333344455566777777777888899999999999999776
Q ss_pred CCCccccc-CCCCC--CCcceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccE
Q 000755 599 DLQSDVVE-KHPRG--SSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGT 675 (1300)
Q Consensus 599 e~~~~~~~-~~~~~--~~~~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~ 675 (1300)
++.+...+ ..+.. +.++.|+|+|++|+|+++ .+++|+|+||+|++||++||||++|||||||+++|+|+++|++|+
T Consensus 1217 ~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~ 1295 (1622)
T PLN03130 1217 SEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGR 1295 (1622)
T ss_pred CcccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCce
Confidence 54322111 11111 234579999999999743 357999999999999999999999999999999999999999999
Q ss_pred EEEcCe-------------EEEEecCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCC
Q 000755 676 LKLCGT-------------KAYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINL 742 (1300)
Q Consensus 676 i~~~g~-------------~ayv~Q~~~l~~~Ti~eNI~fg~~~~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~L 742 (1300)
|.++|. ++||||+|.+|+|||||||.++.++++++.+++++.|++++.++.+|+|++|.+||+|.||
T Consensus 1296 I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nL 1375 (1622)
T PLN03130 1296 ILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENF 1375 (1622)
T ss_pred EEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCC
Confidence 999983 6999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEec
Q 000755 743 SGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAG 822 (1300)
Q Consensus 743 SGGQkqRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~~d~i~~l~~G~i~~~g 822 (1300)
||||||||+||||++++|+|+|||||||+||++|++.| ++.++...+++|+|+|+||++.+..||+|+||++|+|++.|
T Consensus 1376 SgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~I-q~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~G 1454 (1622)
T PLN03130 1376 SVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALI-QKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFD 1454 (1622)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHH-HHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999998877 56677777899999999999999999999999999999999
Q ss_pred ChHHHHhc-CchHHHHHHHH
Q 000755 823 KYNDILNS-GTDFMVLVGAH 841 (1300)
Q Consensus 823 ~~~~l~~~-~~~~~~l~~~~ 841 (1300)
+|+||++. ++.|.+++...
T Consensus 1455 t~~eLl~~~~g~f~~L~~~~ 1474 (1622)
T PLN03130 1455 TPENLLSNEGSAFSKMVQST 1474 (1622)
T ss_pred CHHHHHhCCCCHHHHHHHHc
Confidence 99999986 57888887543
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-63 Score=599.58 Aligned_cols=485 Identities=23% Similarity=0.320 Sum_probs=352.1
Q ss_pred eEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC--eEEEEecCCcCCC
Q 000755 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--TKAYVAQSPWIQS 693 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g--~~ayv~Q~~~l~~ 693 (1300)
.|.++|++++|+ ++++|+|+||++.+|++++|||+||+||||||++|.|+..|++|+|...+ +++|++|++....
T Consensus 3 ~i~~~~ls~~~g---~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~ 79 (530)
T COG0488 3 MITLENLSLAYG---DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDP 79 (530)
T ss_pred eEEEeeeEEeeC---CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCC
Confidence 488999999994 57899999999999999999999999999999999999999999999987 7999999999985
Q ss_pred -CCHHHHHhcCCCCC---HHHHHHHHH---------------------HhcchHHHhhcc--CCCcccccCCCCCCCHHH
Q 000755 694 -GNIEDNILFGKPMD---REKYDRVLE---------------------ACSLKKDLEILS--FGDQTVIGERGINLSGGQ 746 (1300)
Q Consensus 694 -~Ti~eNI~fg~~~~---~~~~~~vl~---------------------~~~l~~dl~~l~--~Gd~t~ige~g~~LSGGQ 746 (1300)
.|+.|.+.-|...- ..+++.+.. .-.++.+++..- .|.... .....+|||||
T Consensus 80 ~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~LSGG~ 158 (530)
T COG0488 80 EKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSSLSGGW 158 (530)
T ss_pred CccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhhcCHHH
Confidence 49999998875311 111222111 001112222111 222222 45667899999
Q ss_pred HHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCcccc-CCEEEEEeCCeEE-EecCh
Q 000755 747 KQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPA-ADLILVMKDGKIT-QAGKY 824 (1300)
Q Consensus 747 kqRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~-~~g~~ 824 (1300)
|.|++|||||..+||+|||||||++||..+..++- +.+.. .+| |+|+|||+.+||+. |++|+.+++|++. +.|+|
T Consensus 159 r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe-~~L~~-~~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny 235 (530)
T COG0488 159 RRRVALARALLEEPDLLLLDEPTNHLDLESIEWLE-DYLKR-YPG-TVIVVSHDRYFLDNVATHILELDRGKLTPYKGNY 235 (530)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHH-HHHHh-CCC-cEEEEeCCHHHHHHHhhheEEecCCceeEecCCH
Confidence 99999999999999999999999999999988774 44443 345 99999999999997 9999999999876 88999
Q ss_pred HHHHhcCchHHHHHHHHHHHhhhhcccCCCCccccccccccCCCccccccccccCccccccccchhhhhhhHHHHHHHHH
Q 000755 825 NDILNSGTDFMVLVGAHQQALSALDSIEGGPVSERISMNKENGGMDTTNGVTMKEGNEDIQTDKVDEQYYIPSARELSRL 904 (1300)
Q Consensus 825 ~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~~lp~grnr~s~D~v~~~~y~~~~r~l~rl 904 (1300)
+.+++....-..... +.|.+...+++++
T Consensus 236 ~~~~~~r~~~~~~~~----------------------------------------------------~~~~~~~~~~~~~ 263 (530)
T COG0488 236 SSYLEQKAERLRQEA----------------------------------------------------AAYEKQQKELAKE 263 (530)
T ss_pred HHHHHHHHHHHHHHH----------------------------------------------------HHHHHHHHHHHHH
Confidence 988754321110000 0000000011110
Q ss_pred HhhhhhhHHHHHHHHhhchHHHHHhcchHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000755 905 VGVCKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFHIAGAMEWLCFRLDMLSSLTFAFSLVLLISIPK 984 (1300)
Q Consensus 905 ~~~~~sp~~~~~~E~l~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~~~~~~ 984 (1300)
..|.+++......
T Consensus 264 ----------------------------~~~i~r~~~~~~~--------------------------------------- 276 (530)
T COG0488 264 ----------------------------QEWIRRGKAAASK--------------------------------------- 276 (530)
T ss_pred ----------------------------HHHHHHHHhccch---------------------------------------
Confidence 0111111000000
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcCCCCCCCccccCCCCCC-CCCCceEEEEeee
Q 000755 985 GVIEPAIAGLAVTYGLNLNMLQAWVIWNLCNLENKIISVERILQY--TCISSEPPLVIEESRPDCS-WPTHGEVDILNLQ 1061 (1300)
Q Consensus 985 g~~~~~~~gl~l~~~~~~~~~~~~~~~~~~~le~~~~sveRi~~~--~~~~~e~~~~~~~~~~~~~-wp~~g~i~~~~v~ 1061 (1300)
...-+..+...+|+.+. ...|........-..++.. -.....++++|++
T Consensus 277 ----------------------------~k~a~sr~k~l~k~~~~~~~~~~~~~~~~~~~~f~~~~~~~g~~vl~~~~~~ 328 (530)
T COG0488 277 ----------------------------AKKAKSRIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVS 328 (530)
T ss_pred ----------------------------HHHHHHHHHHHHHHHhhhhhcccccccccceeeccCCcccCCCeeEEEeccc
Confidence 00112233334444421 1111111100000011111 1234568999999
Q ss_pred eeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEEEcCCC-C
Q 000755 1062 VRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDP-T 1140 (1300)
Q Consensus 1062 ~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~vpQ~~-~ 1140 (1300)
+.|++. .++++++||.|.+|++||||||||+|||||+++|.|...|.+|+|.+.- . -++||.+|+. .
T Consensus 329 ~~y~~~-~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~-~----------v~igyf~Q~~~~ 396 (530)
T COG0488 329 KGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGE-T----------VKIGYFDQHRDE 396 (530)
T ss_pred cccCCC-ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCC-c----------eEEEEEEehhhh
Confidence 999765 5699999999999999999999999999999999999999999999853 1 2699999998 3
Q ss_pred CCc-ccHHHhcCCCC-CCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEeCC
Q 000755 1141 MFE-GTVRNNLDPLE-EYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEA 1218 (1300)
Q Consensus 1141 lf~-gTvr~Nl~~~~-~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~~iLlLDEp 1218 (1300)
++. .|+-+++.... ...+.++...|.+.++...-.. .....||||||-|+.||+.++.+|.+||||||
T Consensus 397 l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~----------~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEP 466 (530)
T COG0488 397 LDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQE----------KPVGVLSGGEKARLLLAKLLLQPPNLLLLDEP 466 (530)
T ss_pred cCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHh----------CchhhcCHhHHHHHHHHHHhccCCCEEEEcCC
Confidence 443 38999886433 3347889999999998654222 22356999999999999999999999999999
Q ss_pred CcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEe-cChhhHHhc
Q 000755 1219 TASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEY-DSPTKLLEN 1279 (1300)
Q Consensus 1219 Ts~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~-g~~~~l~~~ 1279 (1300)
|++||.++.+.+.++|.++ ..|||+||||...+.. |++|+++++ ++.++ |+.++..+.
T Consensus 467 TNhLDi~s~~aLe~aL~~f--~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~~ 526 (530)
T COG0488 467 TNHLDIESLEALEEALLDF--EGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLEQ 526 (530)
T ss_pred CccCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHHh
Confidence 9999999999999999887 6799999999999998 999999999 77777 777776653
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-61 Score=648.31 Aligned_cols=475 Identities=17% Similarity=0.178 Sum_probs=356.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchhhcCCCHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHH
Q 000755 363 FRLQVAGIKMRSVLVSMVYNKGLTLSCQAKQSYTSGEIINFMTVDAERIGDFGWY-MHDPWLVILQVSLALLILYKNLGL 441 (1300)
Q Consensus 363 ~~~~~~g~~ir~~L~~~Iy~K~L~ls~~~~~~~~~G~Ivnl~s~Dv~~i~~~~~~-~~~~~~~~l~i~~~l~lL~~~lg~ 441 (1300)
+...+.+.+.-..+...+|++.++.+...++++++|+++|++++|++.+++.+.. +..+....++++.+++++.....+
T Consensus 972 ~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~~~~~~ 1051 (1495)
T PLN03232 972 FWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTI 1051 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345677788888888999999999999999999999999999999999986543 333334444444444333222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 442 ASIAALFATVLIMLTNFPLGRLQENFQDKLMGSKDKRMKVTSEILRNMRILKLQGWEMKFLSKIIELRKIEAGWLKKFLY 521 (1300)
Q Consensus 442 ~~l~~l~~~~l~~~~~~~~~k~~~~~~~~~~~~~d~r~~~~~E~L~~ir~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~ 521 (1300)
..++.+.+.++++.+..+..+..+..++.....+....+.++|.++|+++||.|++|+.|.++..+..+...+.......
T Consensus 1052 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~ 1131 (1495)
T PLN03232 1052 SLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTS 1131 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222222222222333444555566667778889999999999999999999888766554433332221111
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHhc-CCcC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 522 TGAMTSFVFWGAPTFVSVATF-GACMLLG-IPLE-----SGKILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIASF 594 (1300)
Q Consensus 522 ~~~~~~~~~~~~p~~v~~~~f-~~~~~~~-~~Lt-----~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~f 594 (1300)
...+..+..... ...++.+ +.+.+.. +.+. ++.+-.++++...+..|+..+...+..+..+.+|++||.++
T Consensus 1132 ~~~wl~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~ 1209 (1495)
T PLN03232 1132 SNRWLTIRLETL--GGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNY 1209 (1495)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111100000 0111112 2222222 2221 22233345566677889999999999999999999999999
Q ss_pred hcCCCCCccccc-CCCC--CCCcceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccC
Q 000755 595 LCLDDLQSDVVE-KHPR--GSSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK 671 (1300)
Q Consensus 595 L~~~e~~~~~~~-~~~~--~~~~~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~ 671 (1300)
++.++..+...+ ..+. .+..+.|+++|++|+|+++ .+++|+|+||+|++||++||||++|||||||+++|+|+++|
T Consensus 1210 ~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p 1288 (1495)
T PLN03232 1210 IDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVEL 1288 (1495)
T ss_pred hcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 976644322111 1111 1234579999999999643 36899999999999999999999999999999999999999
Q ss_pred CccEEEEcCe-------------EEEEecCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhhccCCCcccccCC
Q 000755 672 ISGTLKLCGT-------------KAYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGER 738 (1300)
Q Consensus 672 ~~G~i~~~g~-------------~ayv~Q~~~l~~~Ti~eNI~fg~~~~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~ 738 (1300)
++|+|.++|. ++||||+|.+|+|||||||.++.++++++.+++++.|+++++++.+|+|++|.+||+
T Consensus 1289 ~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~ 1368 (1495)
T PLN03232 1289 EKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEG 1368 (1495)
T ss_pred CCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCC
Confidence 9999999983 599999999999999999999988999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCccccCCEEEEEeCCeE
Q 000755 739 GINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKI 818 (1300)
Q Consensus 739 g~~LSGGQkqRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~~d~i~~l~~G~i 818 (1300)
|.+|||||||||+||||++++|+|+|||||||+||++|++.| ++.++...+++|+|+||||++.+..||+|+||++|+|
T Consensus 1369 G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~I-q~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~i 1447 (1495)
T PLN03232 1369 GENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLI-QRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQV 1447 (1495)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHH-HHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999998877 5567777789999999999999999999999999999
Q ss_pred EEecChHHHHhcCc-hHHHHHHHH
Q 000755 819 TQAGKYNDILNSGT-DFMVLVGAH 841 (1300)
Q Consensus 819 ~~~g~~~~l~~~~~-~~~~l~~~~ 841 (1300)
++.|+|+||++.++ .|.+++...
T Consensus 1448 vE~Gt~~eLl~~~~~~f~~l~~~~ 1471 (1495)
T PLN03232 1448 LEYDSPQELLSRDTSAFFRMVHST 1471 (1495)
T ss_pred EEECCHHHHHhCCCCHHHHHHHHh
Confidence 99999999998764 788877543
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-63 Score=664.45 Aligned_cols=251 Identities=20% Similarity=0.253 Sum_probs=201.1
Q ss_pred HHHHHHHHHHHHHHHHhh--cCCCCCCCccccCCCCCCCCCCceEEEEeeeeeeC--CCCCcceeeeeEEeeCCcEEEEE
Q 000755 1013 LCNLENKIISVERILQYT--CISSEPPLVIEESRPDCSWPTHGEVDILNLQVRYA--PHLPLVLRGLTCTFPGGMKTGIV 1088 (1300)
Q Consensus 1013 ~~~le~~~~sveRi~~~~--~~~~e~~~~~~~~~~~~~wp~~g~i~~~~v~~~y~--~~~~~vL~~isl~i~~Ge~vgIv 1088 (1300)
..+.|+.+.++||..++. +.+.|.+.......++.. .....++++||+++|+ ++.+.+|+|||+++++||++||+
T Consensus 717 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~ 795 (1394)
T TIGR00956 717 GETSASNKNDIEAGEVLGSTDLTDESDDVNDEKDMEKE-SGEDIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALM 795 (1394)
T ss_pred ccccccccccccccccCCCCcccccccccccccccccc-CCCceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEE
Confidence 346677788999998763 333343322111112211 1122479999999985 23457999999999999999999
Q ss_pred CCCCCcHHHHHHHHhcCCC---CCcceEEECCeecCCCCHHHHhcccEEEcCCCCCC-cccHHHhcCCC------CCCCH
Q 000755 1089 GRTGSGKSTLIQTLFRIVE---PTAGEIVIDGINISSIGLHDLRSRLSIIPQDPTMF-EGTVRNNLDPL------EEYKD 1158 (1300)
Q Consensus 1089 G~tGsGKSTLl~~L~gl~~---p~~G~I~idg~di~~i~~~~lr~~i~~vpQ~~~lf-~gTvr~Nl~~~------~~~~d 1158 (1300)
||||||||||+++|+|+.+ |++|+|.+||.++. .++|++++||||++.++ ..|||||+.+. ...++
T Consensus 796 G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~ 871 (1394)
T TIGR00956 796 GASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSK 871 (1394)
T ss_pred CCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCH
Confidence 9999999999999999998 78999999999984 25788999999997654 56999999742 12333
Q ss_pred H----HHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCC-EEEEeCCCcCCCHHHHHHHHHH
Q 000755 1159 E----EIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSK-VLVLDEATASVDTATDNLIQQT 1233 (1300)
Q Consensus 1159 ~----~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~~-iLlLDEpTs~lD~~t~~~i~~~ 1233 (1300)
+ .+.++++..++.+ ..|+.+++.|.+||||||||++|||||+.+|+ ||+|||||+|||..+...|++.
T Consensus 872 ~~~~~~v~~~l~~l~L~~-------~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~ 944 (1394)
T TIGR00956 872 SEKMEYVEEVIKLLEMES-------YADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKL 944 (1394)
T ss_pred HHHHHHHHHHHHHcCChh-------hCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHH
Confidence 3 3567888887754 36888998888999999999999999999997 9999999999999999999999
Q ss_pred HHHhc-CCcEEEEEeCChhhh--hccCEEEEEeCC-EEEEecChhh
Q 000755 1234 LRQHF-SDCTVITIAHRITSV--IDSDMVLLLSHG-IIEEYDSPTK 1275 (1300)
Q Consensus 1234 l~~~~-~~~Tvi~iaHrl~~i--~~~D~v~vl~~G-~i~e~g~~~~ 1275 (1300)
|++.. +++|||+++|+++.. ..||+|++|++| +++++|++.+
T Consensus 945 L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~ 990 (1394)
T TIGR00956 945 MRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGE 990 (1394)
T ss_pred HHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCccc
Confidence 99874 579999999999974 459999999997 9999998743
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-62 Score=614.56 Aligned_cols=393 Identities=20% Similarity=0.283 Sum_probs=322.1
Q ss_pred hhHHHHHHHHHHhhhhhhHHHHHHHHhhchHHHHHhcchHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 894 YIPSARELSRLVGVCKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFHIAGAMEWLCFRLDMLSSLTFA 973 (1300)
Q Consensus 894 y~~~~r~l~rl~~~~~sp~~~~~~E~l~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~ 973 (1300)
+.+..++..+......+...+.+.|.++|+.+||+|+.|+++.+++.+..++..+..........+......++..+...
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (588)
T PRK11174 183 VGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLSSAVLEFFASISIA 262 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555556677888999999999999999999999999988887776666554444433333333333333222
Q ss_pred HHHHHHHHhcCCcccHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccCC
Q 000755 974 FSLVLLISIPKGVIEPAI---------AGLAVTYGLNLNMLQAWVIWNLCNLENKIISVERILQYTCISSEPPLVIEESR 1044 (1300)
Q Consensus 974 ~~~~~~~~~~~g~~~~~~---------~gl~l~~~~~~~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~ 1044 (1300)
+.+++......|.++.|. +.+++.+...+..++..+...+..+.....+.+|+.++++.+++++. +...
T Consensus 263 ~~~~~~~~~~~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~--~~~~ 340 (588)
T PRK11174 263 LVAVYFGFSYLGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFLETPLAHPQ--QGEK 340 (588)
T ss_pred HHHHHHHHHHhcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccC--CCcc
Confidence 221111111124444332 22333555666778888888889999999999999999987654321 1110
Q ss_pred CCCCCCCCceEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCC
Q 000755 1045 PDCSWPTHGEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIG 1124 (1300)
Q Consensus 1045 ~~~~wp~~g~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~ 1124 (1300)
+...+..+.|+++||++.|.++ +++|+|+||+|++||++||||+||||||||+++|+|++ |++|+|.+||+|+.+++
T Consensus 341 -~~~~~~~~~i~~~~vsf~~~~~-~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~ 417 (588)
T PRK11174 341 -ELASNDPVTIEAEDLEILSPDG-KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELD 417 (588)
T ss_pred -ccCCCCCceEEEEeeEEeccCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCC
Confidence 1111234679999999877654 56999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHhcccEEEcCCCCCCcccHHHhcCCC-CCCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHH
Q 000755 1125 LHDLRSRLSIIPQDPTMFEGTVRNNLDPL-EEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLG 1203 (1300)
Q Consensus 1125 ~~~lr~~i~~vpQ~~~lf~gTvr~Nl~~~-~~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LA 1203 (1300)
.+++|++|+||||||.+|+||||||+.+. ++++|++++++++.+++++++.++|+|+||.+||+|.+||||||||++||
T Consensus 418 ~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialA 497 (588)
T PRK11174 418 PESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALA 497 (588)
T ss_pred HHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999887 46899999999999999999999999999999999999999999999999
Q ss_pred HHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhccCEEEEEeCCEEEEecChhhHHhcCCCh
Q 000755 1204 RVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSS 1283 (1300)
Q Consensus 1204 Rall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~~D~v~vl~~G~i~e~g~~~~l~~~~~~~ 1283 (1300)
||++++|+|||||||||+||.+|++.|++.|++..+++|+|+||||++++..||+|+||++|+++|.|+|++|+++ ++.
T Consensus 498 RAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~~~eL~~~-~~~ 576 (588)
T PRK11174 498 RALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAELSQA-GGL 576 (588)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEeecCCHHHHHhc-chH
Confidence 9999999999999999999999999999999998889999999999999999999999999999999999999975 679
Q ss_pred HHHHHHHHh
Q 000755 1284 FAQLVAEYT 1292 (1300)
Q Consensus 1284 f~~l~~~~~ 1292 (1300)
|+++++.+.
T Consensus 577 y~~l~~~q~ 585 (588)
T PRK11174 577 FATLLAHRQ 585 (588)
T ss_pred HHHHHHHhh
Confidence 999987764
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-62 Score=622.80 Aligned_cols=384 Identities=22% Similarity=0.295 Sum_probs=338.8
Q ss_pred HHHHHHHhhhhhhHHHHHHHHhhchHHHHHhcchHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 899 RELSRLVGVCKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFHIAGAMEWLCFRLDMLSSLTFAFSLVL 978 (1300)
Q Consensus 899 r~l~rl~~~~~sp~~~~~~E~l~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~ 978 (1300)
+...+......+...+++.|+++|+.+||+|+.|+++.+++.+..++..+..+.......|.......+..+...+.+++
T Consensus 300 ~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~ 379 (686)
T TIGR03797 300 VRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFAA 379 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444556778999999999999999999999999999998888888777777777776666555554433333333
Q ss_pred -HHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccCCCCCCCCCCceEEE
Q 000755 979 -LISIPKGVIEPAIAGLAVTYGLNLNMLQAWVIWNLCNLENKIISVERILQYTCISSEPPLVIEESRPDCSWPTHGEVDI 1057 (1300)
Q Consensus 979 -~~~~~~g~~~~~~~gl~l~~~~~~~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~i~~ 1057 (1300)
...+..|.++.|.+..+.++...+..++..+...+.+++....+.+|+.++++.++|.+. ...+ ..+..|.|++
T Consensus 380 g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~---~~~~--~~~~~~~I~~ 454 (686)
T TIGR03797 380 AISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDE---AKTD--PGKLSGAIEV 454 (686)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc---CcCC--CCCCCceEEE
Confidence 233457889999999999999999999999999999999999999999999987665431 1111 1123578999
Q ss_pred EeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEEEcC
Q 000755 1058 LNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQ 1137 (1300)
Q Consensus 1058 ~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~vpQ 1137 (1300)
+||+|+|+++.+++|+|+||+|++||++||||+||||||||+++|+|+++|++|+|.+||+|+++++.+++|++++||||
T Consensus 455 ~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q 534 (686)
T TIGR03797 455 DRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQ 534 (686)
T ss_pred EEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEcc
Confidence 99999997665779999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccHHHhcCCCCCCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEeC
Q 000755 1138 DPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDE 1217 (1300)
Q Consensus 1138 ~~~lf~gTvr~Nl~~~~~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~~iLlLDE 1217 (1300)
||.+|+||||||+.+....+|++++++++.+++++++.++|.|+||.++|+|.+||||||||++||||++++|+||||||
T Consensus 535 ~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDE 614 (686)
T TIGR03797 535 NGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDE 614 (686)
T ss_pred CCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99999999999998876689999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhccCEEEEEeCCEEEEecChhhHHhcCCChHHHHHHH
Q 000755 1218 ATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLVAE 1290 (1300)
Q Consensus 1218 pTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~~D~v~vl~~G~i~e~g~~~~l~~~~~~~f~~l~~~ 1290 (1300)
|||+||+++++.|.+.|++. ++|+|+||||++++..||+|+||++|+|+|.|+|++|+++ ++.|++|+++
T Consensus 615 pTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~-~~~y~~l~~~ 684 (686)
T TIGR03797 615 ATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAR-EGLFAQLARR 684 (686)
T ss_pred CccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHHHh
Confidence 99999999999999999986 6899999999999999999999999999999999999974 7899999875
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-62 Score=551.25 Aligned_cols=532 Identities=21% Similarity=0.286 Sum_probs=394.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhh-HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 305 TAILALLYTLANYVGPYLIDTFVQYLNGEREFKNE-GYVLVSTFFVAKIV--ECLAQRHWMFRLQVAGIKMRSVLVSMVY 381 (1300)
Q Consensus 305 ~~l~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~-g~~l~~~l~~~~~~--~~l~~~~~~~~~~~~g~~ir~~L~~~Iy 381 (1300)
..++.++.-++....|.+.+.+++.+.....+... .+.++...|+-... ..+......|..-++..--...+-..+|
T Consensus 220 cl~ll~i~rli~~~~pi~~k~iv~~ltap~~~~~~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ie~~lf 299 (790)
T KOG0056|consen 220 CLFLLIIGRLINVSLPILSKWIVDELTAPDTFQYSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIETELF 299 (790)
T ss_pred HHHHHHHHHHHhhhhHHhHHHHHHhhcCcchhhHHHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHHHHHHH
Confidence 33444555566677799999999988743322221 12222222221111 1122222222223333344455677889
Q ss_pred HHHhcCCchhhcCCCHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 000755 382 NKGLTLSCQAKQSYTSGEIINFMTVDAERIGDFGWY-MHDPWLVILQVSLALLILYKNLG-LASIAALFATVLIMLTNFP 459 (1300)
Q Consensus 382 ~K~L~ls~~~~~~~~~G~Ivnl~s~Dv~~i~~~~~~-~~~~~~~~l~i~~~l~lL~~~lg-~~~l~~l~~~~l~~~~~~~ 459 (1300)
+|.+.||....-.+.+||++..|....+.+. +..+ ..++-...+.++++++.++.... |-.++.+..+++..-+...
T Consensus 300 rHlh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~ 378 (790)
T KOG0056|consen 300 RHLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMMLLYCYVTIK 378 (790)
T ss_pred HHHHhhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHhheeee
Confidence 9999999988888899999998877666665 3322 22333334455555554433222 2222223333333333334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 460 LGRLQENFQDKLMGSKDKRMKVTSEILRNMRILKLQGWEMKFLSKI----IELRKIEAGWLKKFLYTGAMTSFVFWGAPT 535 (1300)
Q Consensus 460 ~~k~~~~~~~~~~~~~d~r~~~~~E~L~~ir~IK~~~~E~~f~~~i----~~~R~~E~~~l~~~~~~~~~~~~~~~~~p~ 535 (1300)
+.....++++++..+-.+-...-.+.+-|.+++|.|+.|+...++. .+..+.|-+.+....++......++ .-.
T Consensus 379 iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii--~lg 456 (790)
T KOG0056|consen 379 ITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGII--GLG 456 (790)
T ss_pred eehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--hhH
Confidence 5555666676666655555556678899999999999998766554 3344444443332222211111110 111
Q ss_pred HHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCCCCCcc
Q 000755 536 FVSVATFGACMLLGIPLESGKILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIASFLCLDDLQSDVVEKHPRGSSET 615 (1300)
Q Consensus 536 ~v~~~~f~~~~~~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~~~~~~~~~ 615 (1300)
++....+.+|.+..+.++.|...-+..++..++.|++.+...+..++...+-.+|+.+.+.+++...+.....|.....+
T Consensus 457 ll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~pl~~~~G 536 (790)
T KOG0056|consen 457 LLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAPPLKVTQG 536 (790)
T ss_pred HhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCCCCCccccCC
Confidence 22223344566667789999999999999999999999999999999999999999999976554333332233334567
Q ss_pred eEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe-------------E
Q 000755 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------K 682 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-------------~ 682 (1300)
.|+++|++|+|++ .+|+|+||||++.||+.+|+|||+|+||||++++|.++++..+|.|.++|+ |
T Consensus 537 ~i~fsnvtF~Y~p--~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~I 614 (790)
T KOG0056|consen 537 KIEFSNVTFAYDP--GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSI 614 (790)
T ss_pred eEEEEEeEEecCC--CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhc
Confidence 8999999999984 579999999999999999999999999999999999999999999999994 6
Q ss_pred EEEecCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHHHHHccCCC
Q 000755 683 AYVAQSPWIQSGNIEDNILFGKP-MDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDAD 761 (1300)
Q Consensus 683 ayv~Q~~~l~~~Ti~eNI~fg~~-~~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLARAly~~~~ 761 (1300)
|.||||..+||+||..||.+|+| ...|+..++.++++.++.|-.+|+|++|.+||||-.||||+|||+|+||+++++|.
T Consensus 615 GVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~ 694 (790)
T KOG0056|consen 615 GVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPS 694 (790)
T ss_pred CcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCc
Confidence 99999999999999999999998 46788888999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHhc-CchHHHHHHH
Q 000755 762 IYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNS-GTDFMVLVGA 840 (1300)
Q Consensus 762 illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~l~~~ 840 (1300)
|++|||+|||||.+|++.| +.++..+..++|.|+|.||++.+-+||.|++++||+|+|.|+|+|++++ ++.|.++..+
T Consensus 695 iIlLDEATSALDT~tER~I-QaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Ya~MWq~ 773 (790)
T KOG0056|consen 695 IILLDEATSALDTNTERAI-QAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYADMWQA 773 (790)
T ss_pred EEEEcchhhhcCCccHHHH-HHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCcHHHHHHH
Confidence 9999999999999999988 6788888899999999999999999999999999999999999999987 7889888765
Q ss_pred HH
Q 000755 841 HQ 842 (1300)
Q Consensus 841 ~~ 842 (1300)
++
T Consensus 774 qq 775 (790)
T KOG0056|consen 774 QQ 775 (790)
T ss_pred HH
Confidence 44
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-60 Score=639.54 Aligned_cols=471 Identities=15% Similarity=0.153 Sum_probs=360.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCchhhcCCCHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 369 GIKMRSVLVSMVYNKGLTLSCQAKQSYTSGEIINFMTVDAERIGDFGW-YMHDPWLVILQVSLALLILYKNLGLASIAAL 447 (1300)
Q Consensus 369 g~~ir~~L~~~Iy~K~L~ls~~~~~~~~~G~Ivnl~s~Dv~~i~~~~~-~~~~~~~~~l~i~~~l~lL~~~lg~~~l~~l 447 (1300)
+.+....+...+|++.++.+...++++++|+|+|++++|++.+.+++. .+..+....+.++.++++++....+.+++.+
T Consensus 1026 ~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~~p~~~~~~i 1105 (1560)
T PTZ00243 1026 MRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSASQPFVLVALV 1105 (1560)
T ss_pred HHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445677889999999999999999999999999999999998654 3444444455555444444333223222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 448 FATVLIMLTNFPLGRLQENFQDKLMGSKDKRMKVTSEILRNMRILKLQGWEMKFLSKIIELRKIEAGWLKKFLYTGAMTS 527 (1300)
Q Consensus 448 ~~~~l~~~~~~~~~k~~~~~~~~~~~~~d~r~~~~~E~L~~ir~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~~~~~~~ 527 (1300)
.++++...+...+.+..+..++.....++...+.++|.++|+++||.|++|+.|.++..+.-+...+..........+..
T Consensus 1106 ~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~ 1185 (1560)
T PTZ00243 1106 PCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLG 1185 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222233333444555555555666777788999999999999999999999888875543332222111111111111
Q ss_pred HH-HHH-HHHHHHHHHHHHH--HHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-
Q 000755 528 FV-FWG-APTFVSVATFGAC--MLLGIPLESGKILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIASFLCLDDLQS- 602 (1300)
Q Consensus 528 ~~-~~~-~p~~v~~~~f~~~--~~~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~- 602 (1300)
+. ... ....+.++.++++ ......+++|.+..++.+...+..|+..+...+..+.++..|++||.++++..+.++
T Consensus 1186 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~ 1265 (1560)
T PTZ00243 1186 VRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDM 1265 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 11 111 1111122222222 222345788988888888888999999999999999999999999999996322110
Q ss_pred cc-----------------------c-cCC-----CCCCCcceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcC
Q 000755 603 DV-----------------------V-EKH-----PRGSSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGT 653 (1300)
Q Consensus 603 ~~-----------------------~-~~~-----~~~~~~~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~ 653 (1300)
.. . ... +.....+.|+|+|++|+|+++ .+++|+|+||+|++||++||||+
T Consensus 1266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~-~~~vL~~vsf~I~~GekVaIVGr 1344 (1560)
T PTZ00243 1266 PELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREG-LPLVLRGVSFRIAPREKVGIVGR 1344 (1560)
T ss_pred ccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCC-CCceeecceEEECCCCEEEEECC
Confidence 00 0 000 011123579999999999743 35699999999999999999999
Q ss_pred CCCChHHHHHHHhccccCCccEEEEcCe-------------EEEEecCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcc
Q 000755 654 VGSGKSSLLSCILGEVPKISGTLKLCGT-------------KAYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSL 720 (1300)
Q Consensus 654 ~GsGKSTLl~~llG~~~~~~G~i~~~g~-------------~ayv~Q~~~l~~~Ti~eNI~fg~~~~~~~~~~vl~~~~l 720 (1300)
+|||||||+++|+|+++|++|+|.++|. ++||||+|.+|+|||||||..+.++++++++++++.|++
T Consensus 1345 TGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l 1424 (1560)
T PTZ00243 1345 TGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGL 1424 (1560)
T ss_pred CCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCC
Confidence 9999999999999999999999999984 599999999999999999998778899999999999999
Q ss_pred hHHHhhccCCCcccccCCCCCCCHHHHHHHHHHHHHccC-CCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEec
Q 000755 721 KKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQD-ADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTH 799 (1300)
Q Consensus 721 ~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLARAly~~-~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH 799 (1300)
++.++.+|+|++|.+||+|.||||||||||+|||||+++ |+|+|||||||+||++|++.| ++.+....+++|+|+|+|
T Consensus 1425 ~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~I-q~~L~~~~~~~TvI~IAH 1503 (1560)
T PTZ00243 1425 RERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQI-QATVMSAFSAYTVITIAH 1503 (1560)
T ss_pred hHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHH-HHHHHHHCCCCEEEEEec
Confidence 999999999999999999999999999999999999996 899999999999999998888 456777778999999999
Q ss_pred CCCccccCCEEEEEeCCeEEEecChHHHHhc-CchHHHHHHHH
Q 000755 800 QVEFLPAADLILVMKDGKITQAGKYNDILNS-GTDFMVLVGAH 841 (1300)
Q Consensus 800 ~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~l~~~~ 841 (1300)
|++.+..||+|+||++|+|++.|+|+||++. ++.|..++...
T Consensus 1504 Rl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~ 1546 (1560)
T PTZ00243 1504 RLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEAL 1546 (1560)
T ss_pred cHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHh
Confidence 9999999999999999999999999999974 77888887543
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-61 Score=610.83 Aligned_cols=478 Identities=19% Similarity=0.270 Sum_probs=322.5
Q ss_pred ceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCeEEEEecCCcCCCC
Q 000755 615 TAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSG 694 (1300)
Q Consensus 615 ~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~~ayv~Q~~~l~~~ 694 (1300)
..|+++|++|+|+ ++++|+|+||+|++|++++|||+|||||||||++|+|+.. .| +.-+|+++|++|++.-.+.
T Consensus 176 ~~I~i~nls~~y~---~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~--~g-~p~~g~I~~~~Q~~~g~~~ 249 (718)
T PLN03073 176 KDIHMENFSISVG---GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAI--DG-IPKNCQILHVEQEVVGDDT 249 (718)
T ss_pred eeEEEceEEEEeC---CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CC-CCCCCEEEEEeccCCCCCC
Confidence 4699999999996 3469999999999999999999999999999999999741 13 2234678888887543333
Q ss_pred CHHHHHhcC-------------------------------------CCCC--HHHHHHHHHHhcch----------HHHh
Q 000755 695 NIEDNILFG-------------------------------------KPMD--REKYDRVLEACSLK----------KDLE 725 (1300)
Q Consensus 695 Ti~eNI~fg-------------------------------------~~~~--~~~~~~vl~~~~l~----------~dl~ 725 (1300)
|+.+.+.-. .+.+ .+++.++.+...+. .-+.
T Consensus 250 t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~ 329 (718)
T PLN03073 250 TALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILA 329 (718)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH
Confidence 543332110 0000 02222222222111 1111
Q ss_pred hccCCCc-ccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCcc
Q 000755 726 ILSFGDQ-TVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFL 804 (1300)
Q Consensus 726 ~l~~Gd~-t~ige~g~~LSGGQkqRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l 804 (1300)
.+ |.. ........+||||||||++|||||+.+|++|||||||++||+.+..++.+ .+..+ ++|+|+|||+++++
T Consensus 330 ~l--gl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~-~L~~~--~~tviivsHd~~~l 404 (718)
T PLN03073 330 GL--SFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLET-YLLKW--PKTFIVVSHAREFL 404 (718)
T ss_pred HC--CCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHH-HHHHc--CCEEEEEECCHHHH
Confidence 11 211 11234457899999999999999999999999999999999999888865 45543 68999999999999
Q ss_pred cc-CCEEEEEeCCeEE-EecChHHHHhcCchHHHHHHHHHHHhhhhcccCCCCccccccccccCCCccccccccccCccc
Q 000755 805 PA-ADLILVMKDGKIT-QAGKYNDILNSGTDFMVLVGAHQQALSALDSIEGGPVSERISMNKENGGMDTTNGVTMKEGNE 882 (1300)
Q Consensus 805 ~~-~d~i~~l~~G~i~-~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~~lp~grn 882 (1300)
.. ||+|++|++|++. +.|+|+++......... ..
T Consensus 405 ~~~~d~i~~l~~g~i~~~~g~~~~~~~~~~~~~~---~~----------------------------------------- 440 (718)
T PLN03073 405 NTVVTDILHLHGQKLVTYKGDYDTFERTREEQLK---NQ----------------------------------------- 440 (718)
T ss_pred HHhCCEEEEEECCEEEEeCCCHHHHHHHHHHHHH---HH-----------------------------------------
Confidence 87 9999999999996 78998876532110000 00
Q ss_pred cccccchhhhhhhHHHHHHHHHHhhhhhhHHHHHHHHhhchHHHHHhcchHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Q 000755 883 DIQTDKVDEQYYIPSARELSRLVGVCKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFHIAGAMEWLCF 962 (1300)
Q Consensus 883 r~s~D~v~~~~y~~~~r~l~rl~~~~~sp~~~~~~E~l~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~ 962 (1300)
++-|-+..++.+++.. |..++.... .+.
T Consensus 441 --------~~~~e~~~k~~~~l~~----------------------------~i~~~~~~a---~~~------------- 468 (718)
T PLN03073 441 --------QKAFESNERSRSHMQA----------------------------FIDKFRYNA---KRA------------- 468 (718)
T ss_pred --------HHHHHHHHHHHHHHHH----------------------------HHHHhhhhh---hhh-------------
Confidence 0001011111111110 000000000 000
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccc
Q 000755 963 RLDMLSSLTFAFSLVLLISIPKGVIEPAIAGLAVTYGLNLNMLQAWVIWNLCNLENKIISVERILQYTCISSEPPLVIEE 1042 (1300)
Q Consensus 963 ~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~gl~l~~~~~~~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~ 1042 (1300)
...+......+|+......+.+++....
T Consensus 469 ---------------------------------------------------~~~~s~~k~l~~~~~~~~~~~~~~~~~~- 496 (718)
T PLN03073 469 ---------------------------------------------------SLVQSRIKALDRLGHVDAVVNDPDYKFE- 496 (718)
T ss_pred ---------------------------------------------------HHHhhcchHHHHHhhhhccccCCCceee-
Confidence 0000001112232221111111110000
Q ss_pred CCCCCCCCCCceEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCC
Q 000755 1043 SRPDCSWPTHGEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISS 1122 (1300)
Q Consensus 1043 ~~~~~~wp~~g~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~ 1122 (1300)
..++..++....++++|++++|+++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+++
T Consensus 497 ~~~~~~~~~~~~L~~~~ls~~y~~~-~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~----- 570 (718)
T PLN03073 497 FPTPDDRPGPPIISFSDASFGYPGG-PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA----- 570 (718)
T ss_pred cCCCccCCCCceEEEEeeEEEeCCC-CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----
Confidence 0001112333579999999999643 3589999999999999999999999999999999999999999999875
Q ss_pred CCHHHHhcccEEEcCCCCCCcccHHHhcC-----CCCCCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHH
Q 000755 1123 IGLHDLRSRLSIIPQDPTMFEGTVRNNLD-----PLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQR 1197 (1300)
Q Consensus 1123 i~~~~lr~~i~~vpQ~~~lf~gTvr~Nl~-----~~~~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqr 1197 (1300)
+.+++|+||++. ...++.+|.. ......++++.++|+.+++.+... ......||||||
T Consensus 571 ------~~~igyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~----------~~~~~~LSgGqk 633 (718)
T PLN03073 571 ------KVRMAVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQK 633 (718)
T ss_pred ------ceeEEEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHh----------cCCccccCHHHH
Confidence 347999999863 2224444421 122345677888999998863221 123467999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhc-cCEEEEEeCCEEE-EecChhh
Q 000755 1198 QLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGIIE-EYDSPTK 1275 (1300)
Q Consensus 1198 Qrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~-e~g~~~~ 1275 (1300)
||++||||++.+|++|||||||++||+.+.+.+.+.|++. +.|||+|||+++.+.. ||+|++|++|+++ ..|++++
T Consensus 634 qRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~ 711 (718)
T PLN03073 634 SRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHD 711 (718)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHH
Confidence 9999999999999999999999999999999999999875 3599999999999987 9999999999998 4677665
Q ss_pred H
Q 000755 1276 L 1276 (1300)
Q Consensus 1276 l 1276 (1300)
.
T Consensus 712 ~ 712 (718)
T PLN03073 712 Y 712 (718)
T ss_pred H
Confidence 4
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-62 Score=622.57 Aligned_cols=385 Identities=26% Similarity=0.364 Sum_probs=325.0
Q ss_pred hHHHHHHHHHHhhhhhhHHHHHHHHhhchHHHHHhcchHHHHHHHHHHHHhhcchHHHHHHH---HHHHHHHHHHHHHHH
Q 000755 895 IPSARELSRLVGVCKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFHIAGA---MEWLCFRLDMLSSLT 971 (1300)
Q Consensus 895 ~~~~r~l~rl~~~~~sp~~~~~~E~l~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~---~~wl~~~l~~~~~~~ 971 (1300)
.+..++..+......+...+++.|+++|+.+||+|+.|+.+.+++.+..++..+........ ..|....+..+..+.
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (711)
T TIGR00958 322 GKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLGMLIQVL 401 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455556677889999999999999999999999888888877766554433322 223322222222211
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccCCCCCCCCC
Q 000755 972 FAFSLVLLISIPKGVIEPAIAGLAVTYGLNLNMLQAWVIWNLCNLENKIISVERILQYTCISSEPPLVIEESRPDCSWPT 1051 (1300)
Q Consensus 972 ~~~~~~~~~~~~~g~~~~~~~gl~l~~~~~~~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~ 1051 (1300)
+. .+....+..|.+++|.+..++.|...+..++..+...+.++++...+.+|+.++++.+++.+.. . ....++.
T Consensus 402 il--~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~---~-~~~~~~~ 475 (711)
T TIGR00958 402 VL--YYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLT---G-TLAPLNL 475 (711)
T ss_pred HH--HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC---C-CCCCCCC
Confidence 11 1112335578899999999999999999999999999999999999999999999876553211 1 1112345
Q ss_pred CceEEEEeeeeeeCCC-CCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhc
Q 000755 1052 HGEVDILNLQVRYAPH-LPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS 1130 (1300)
Q Consensus 1052 ~g~i~~~~v~~~y~~~-~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~ 1130 (1300)
.+.|+++||+|+|+++ .+++|+|+||+|++||++|||||||||||||+++|+|+++|++|+|.+||+|+++++.+++|+
T Consensus 476 ~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~ 555 (711)
T TIGR00958 476 EGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHR 555 (711)
T ss_pred CCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHh
Confidence 6789999999999753 357999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEcCCCCCCcccHHHhcCCC-CCCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccC
Q 000755 1131 RLSIIPQDPTMFEGTVRNNLDPL-EEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKK 1209 (1300)
Q Consensus 1131 ~i~~vpQ~~~lf~gTvr~Nl~~~-~~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~ 1209 (1300)
+|+||||||.+|++||||||.+. .+.+|++++++++.++++++++++|+|+||.++|+|.+||||||||++||||++++
T Consensus 556 ~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~ 635 (711)
T TIGR00958 556 QVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRK 635 (711)
T ss_pred hceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999865 46789999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhccCEEEEEeCCEEEEecChhhHHhcCCChHHHHH
Q 000755 1210 SKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLV 1288 (1300)
Q Consensus 1210 ~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~~D~v~vl~~G~i~e~g~~~~l~~~~~~~f~~l~ 1288 (1300)
|+|||||||||+||+++++.|++ ....+++|+|+||||++++..||+|+||++|+|+|.|+|++|+++ ++.|++|+
T Consensus 636 p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~-~~~y~~lv 711 (711)
T TIGR00958 636 PRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMED-QGCYKHLV 711 (711)
T ss_pred CCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhC-CCchHhcC
Confidence 99999999999999999999999 334578999999999999999999999999999999999999975 57888764
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-62 Score=567.09 Aligned_cols=386 Identities=24% Similarity=0.360 Sum_probs=333.6
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHhhchHHHHHhcchHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 000755 897 SARELSRLVGVCKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFHIAGAMEWLCFRLDMLSSLTFAFS- 975 (1300)
Q Consensus 897 ~~r~l~rl~~~~~sp~~~~~~E~l~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~- 975 (1300)
.+|...+--...++.+.++|.|.++|....+.||++++|.+......+...+..........|-.+.+.++..+.+...
T Consensus 182 ~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l 261 (573)
T COG4987 182 AGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLL 261 (573)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556678889999999999999999999999999999999999888888888999999988888887766633
Q ss_pred HHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCCCCCCccccCCCCCCCCCCc-
Q 000755 976 LVLLISIPKGVIEPAIAGLAVTYGLNLNMLQAWVI-WNLCNLENKIISVERILQYTCISSEPPLVIEESRPDCSWPTHG- 1053 (1300)
Q Consensus 976 ~~~~~~~~~g~~~~~~~gl~l~~~~~~~~~~~~~~-~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g- 1053 (1300)
++.......|..+...+.+++...+.....+.-+. ..+.++.....|..|+.+..+.++|.... .+ ..|..+
T Consensus 262 ~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~~-~~-----~~~~~~~ 335 (573)
T COG4987 262 LWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFP-DE-----QTATTGQ 335 (573)
T ss_pred HHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCCC-cc-----ccCCccc
Confidence 33334456666653333333333233333333333 55678888999999999988776664322 11 112222
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccE
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLS 1133 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~ 1133 (1300)
.++++||+|+|+++.+++|+|+||++++||||||+||||||||||+++|.|.++|++|+|.++|.++..++.+++|+.|+
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~ 415 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETIS 415 (573)
T ss_pred eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHh
Confidence 79999999999998889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCCcccHHHhcCCC-CCCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCE
Q 000755 1134 IIPQDPTMFEGTVRNNLDPL-EEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKV 1212 (1300)
Q Consensus 1134 ~vpQ~~~lf~gTvr~Nl~~~-~~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~~i 1212 (1300)
+++|.+++|++|+|+||... .+.+||++|++|+++||.+.+++.|+||+|.+||+|.+||||||||++|||+||++.++
T Consensus 416 vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl 495 (573)
T COG4987 416 VLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPL 495 (573)
T ss_pred hhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCe
Confidence 99999999999999999764 46899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhccCEEEEEeCCEEEEecChhhHHhcCCChHHHHHH
Q 000755 1213 LVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLVA 1289 (1300)
Q Consensus 1213 LlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~~D~v~vl~~G~i~e~g~~~~l~~~~~~~f~~l~~ 1289 (1300)
++|||||.|||+.|++.+.+.|.+..+|+|+|+||||+..++.||||+||++|+++|+|+|++|++ ++|.|+++++
T Consensus 496 ~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~-~~g~~~~l~q 571 (573)
T COG4987 496 WLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLA-NNGRYKRLYQ 571 (573)
T ss_pred EEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhc-cccHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999998 5799999875
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-61 Score=570.48 Aligned_cols=388 Identities=25% Similarity=0.347 Sum_probs=336.1
Q ss_pred HHHHHhhhhhhHHHHHHHHhhchHHHHHhcchHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 000755 901 LSRLVGVCKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFHIAGAMEWLCFRLDMLSSLTFAFSLVLL- 979 (1300)
Q Consensus 901 l~rl~~~~~sp~~~~~~E~l~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~- 979 (1300)
..+-.-.+...+.+||-+.++|+.|+|+|+..+...++..+...++.+.........---+..+|++.++.++.+++..
T Consensus 167 ~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g 246 (559)
T COG4988 167 ASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIG 246 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444556788999999999999999999998888888877777766655555544446778888888777776664
Q ss_pred HHhcC-CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccCCCCCCCCCCceEEEE
Q 000755 980 ISIPK-GVIEPAIAGLAVTYGLNLNMLQAWVIWNLCNLENKIISVERILQYTCISSEPPLVIEESRPDCSWPTHGEVDIL 1058 (1300)
Q Consensus 980 ~~~~~-g~~~~~~~gl~l~~~~~~~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~i~~~ 1058 (1300)
..+.. |.++-...-+++..+.-+..++..+...+..-.+...+.+.+..+.+.|.+.+... ......|....+++.+
T Consensus 247 ~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~--~~~~~~~~~~~ei~~~ 324 (559)
T COG4988 247 FRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSG--EKAEVANEPPIEISLE 324 (559)
T ss_pred HHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCc--cccccccCCCceeeec
Confidence 33334 67777777777777888888888888888888888899999999988776643211 1112233334567777
Q ss_pred eeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEEEcCC
Q 000755 1059 NLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQD 1138 (1300)
Q Consensus 1059 ~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~vpQ~ 1138 (1300)
|++++|+++. ++++|+||++++|++++|||+||||||||+++|+|+.+|++|+|.+||+|+.+++.+.+|+++++|||+
T Consensus 325 ~l~~~y~~g~-~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~ 403 (559)
T COG4988 325 NLSFRYPDGK-PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQN 403 (559)
T ss_pred ceEEecCCCC-cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCC
Confidence 9999998764 799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccHHHhcCCCC-CCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEeC
Q 000755 1139 PTMFEGTVRNNLDPLE-EYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDE 1217 (1300)
Q Consensus 1139 ~~lf~gTvr~Nl~~~~-~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~~iLlLDE 1217 (1300)
|++|+||+|||+.+.. +.+|++++++++++++.++++. |+||||.+||+|.+|||||+|||+||||++++++++++||
T Consensus 404 p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDE 482 (559)
T COG4988 404 PYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDE 482 (559)
T ss_pred CccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecC
Confidence 9999999999998765 4889999999999999999999 9999999999999999999999999999999999999999
Q ss_pred CCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhccCEEEEEeCCEEEEecChhhHHhcCCChHHHHHHHHhh
Q 000755 1218 ATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLVAEYTQ 1293 (1300)
Q Consensus 1218 pTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~~D~v~vl~~G~i~e~g~~~~l~~~~~~~f~~l~~~~~~ 1293 (1300)
|||+||.+|++.|.+.|.+.++++|||+||||++.+.++|+|+||++|+++|.|+|++|.++ ++.|++|++++..
T Consensus 483 pTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~-~~~y~~l~~~q~~ 557 (559)
T COG4988 483 PTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEK-QGLYANLLKQQEG 557 (559)
T ss_pred CccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhc-CcHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999974 7899999988654
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-60 Score=631.20 Aligned_cols=216 Identities=16% Similarity=0.209 Sum_probs=187.7
Q ss_pred CceEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcc
Q 000755 1052 HGEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSR 1131 (1300)
Q Consensus 1052 ~g~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~ 1131 (1300)
...|+++|++++|+++...+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.+ ...+.|++
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~ 2013 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQN 2013 (2272)
T ss_pred CceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhh
Confidence 34699999999997543469999999999999999999999999999999999999999999999999865 45667889
Q ss_pred cEEEcCCCCCCcc-cHHHhcCCCC---CCCH----HHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHH
Q 000755 1132 LSIIPQDPTMFEG-TVRNNLDPLE---EYKD----EEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLG 1203 (1300)
Q Consensus 1132 i~~vpQ~~~lf~g-Tvr~Nl~~~~---~~~d----~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LA 1203 (1300)
|||+||++.+++. |++||+.... .... +.+.++++.+++.+..++.+ ..||||||||++||
T Consensus 2014 IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~-----------~~LSGGqKqRLslA 2082 (2272)
T TIGR01257 2014 MGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLA-----------GTYSGGNKRKLSTA 2082 (2272)
T ss_pred EEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCCh-----------hhCCHHHHHHHHHH
Confidence 9999999988865 9999986421 1222 23556788888876544433 46899999999999
Q ss_pred HHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHHhc
Q 000755 1204 RVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLEN 1279 (1300)
Q Consensus 1204 Rall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~~~ 1279 (1300)
|||+.+|+||+|||||+|||+.+++.+.+.|++.. +++|||++||++++++. ||||++|++|+++..|+++++.++
T Consensus 2083 ~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2083 IALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHH
Confidence 99999999999999999999999999999998864 57899999999999988 999999999999999999999654
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-61 Score=619.28 Aligned_cols=390 Identities=24% Similarity=0.346 Sum_probs=337.5
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHhhchHHHHHhcchHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 896 PSARELSRLVGVCKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFHIAGAMEWLCFRLDMLSSLTFAFS 975 (1300)
Q Consensus 896 ~~~r~l~rl~~~~~sp~~~~~~E~l~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~ 975 (1300)
+..++..+......+...+++.|+++|+.+||+++.|+.+.+++.+..++..+..........+.......+..+...+.
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i 394 (710)
T TIGR03796 315 RRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALI 394 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455566788999999999999999999999999999888877777666666666666555555544433333
Q ss_pred HHH-HHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccc--C-CCCCCCCC
Q 000755 976 LVL-LISIPKGVIEPAIAGLAVTYGLNLNMLQAWVIWNLCNLENKIISVERILQYTCISSEPPLVIEE--S-RPDCSWPT 1051 (1300)
Q Consensus 976 ~~~-~~~~~~g~~~~~~~gl~l~~~~~~~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~--~-~~~~~wp~ 1051 (1300)
+++ ...+..|.++.|.+..+.++...+..++..+...+.+++....+.+|+.++++.++|.+..... . .....++.
T Consensus 395 l~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~ 474 (710)
T TIGR03796 395 LVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRL 474 (710)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccccccCCCC
Confidence 333 2345678899999999999999999999999999999999999999999999887664321100 0 01111344
Q ss_pred CceEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcc
Q 000755 1052 HGEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSR 1131 (1300)
Q Consensus 1052 ~g~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~ 1131 (1300)
.|.|+++||+|+|++..+++|+|+||+|++||++||||+||||||||+++|+|+++|++|+|.+||+|+++++.+++|++
T Consensus 475 ~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~ 554 (710)
T TIGR03796 475 SGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANS 554 (710)
T ss_pred CCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhh
Confidence 67899999999998766679999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEcCCCCCCcccHHHhcCCCC-CCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCC
Q 000755 1132 LSIIPQDPTMFEGTVRNNLDPLE-EYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKS 1210 (1300)
Q Consensus 1132 i~~vpQ~~~lf~gTvr~Nl~~~~-~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~ 1210 (1300)
++||||||.+|+||||||+.+.. +.+|++++++++.+++++++.++|+|+||.++|+|.+||||||||++||||++++|
T Consensus 555 i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p 634 (710)
T TIGR03796 555 VAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNP 634 (710)
T ss_pred eeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCC
Confidence 99999999999999999998764 68999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhccCEEEEEeCCEEEEecChhhHHhcCCChHHHHH
Q 000755 1211 KVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLV 1288 (1300)
Q Consensus 1211 ~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~~D~v~vl~~G~i~e~g~~~~l~~~~~~~f~~l~ 1288 (1300)
+|||||||||+||++|++.|.+.|++ .++|+|+||||++++..||||++|++|+|+|.|+|++|+++ ++.|++|+
T Consensus 635 ~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~~-~~~y~~l~ 709 (710)
T TIGR03796 635 SILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAV-GGAYARLI 709 (710)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHHc-CCcHHHHh
Confidence 99999999999999999999999987 48999999999999999999999999999999999999974 68899886
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-61 Score=604.84 Aligned_cols=388 Identities=28% Similarity=0.388 Sum_probs=332.3
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhhchHHHHHhcchHHHHHHHHHHHHhhcchHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 000755 898 ARELSRLVGVCKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFHIAGAMEWL-CFRLDMLSSLTFAFSL 976 (1300)
Q Consensus 898 ~r~l~rl~~~~~sp~~~~~~E~l~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl-~~~l~~~~~~~~~~~~ 976 (1300)
.+...+......+...+++.|+++|+.+||+|+.++++.+++.+..++..+..........+. .....++..+...+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (592)
T PRK10790 189 STPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSALILCGLL 268 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444566788899999999999999999999999888877766555544333333222 2223333322222222
Q ss_pred HHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccCCCCCCCCCCceEE
Q 000755 977 VLLISIPKGVIEPAIAGLAVTYGLNLNMLQAWVIWNLCNLENKIISVERILQYTCISSEPPLVIEESRPDCSWPTHGEVD 1056 (1300)
Q Consensus 977 ~~~~~~~~g~~~~~~~gl~l~~~~~~~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~i~ 1056 (1300)
++......|.++.|.+.+++.|...+..++..+...+..+++...+.+|+.++++.++++.. .. ..++..+.|+
T Consensus 269 ~~~~~~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~---~~---~~~~~~~~i~ 342 (592)
T PRK10790 269 MLFGFSASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYG---ND---DRPLQSGRID 342 (592)
T ss_pred HHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCC---CC---ccCCCCCeEE
Confidence 22222457889999999999999999999999999999999999999999999876544221 11 1123457899
Q ss_pred EEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEEEc
Q 000755 1057 ILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIP 1136 (1300)
Q Consensus 1057 ~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~vp 1136 (1300)
++|++++|+++ +++|+|+||+|++||++||||+||||||||+++|+|+++|++|+|.+||.|+++++.+.+|++|+|||
T Consensus 343 ~~~v~f~y~~~-~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~ 421 (592)
T PRK10790 343 IDNVSFAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQ 421 (592)
T ss_pred EEEEEEEeCCC-CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEc
Confidence 99999999754 46999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccHHHhcCCCCCCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 000755 1137 QDPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLD 1216 (1300)
Q Consensus 1137 Q~~~lf~gTvr~Nl~~~~~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~~iLlLD 1216 (1300)
|||.+|++|+|+|+.+..+.+|+++++++++++++++++++|+||||.++|+|.+||||||||++|||||+++|+|||||
T Consensus 422 Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlD 501 (592)
T PRK10790 422 QDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILD 501 (592)
T ss_pred cCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 99999999999999988788999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhccCEEEEEeCCEEEEecChhhHHhcCCChHHHHHHHHhh
Q 000755 1217 EATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLVAEYTQ 1293 (1300)
Q Consensus 1217 EpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~~D~v~vl~~G~i~e~g~~~~l~~~~~~~f~~l~~~~~~ 1293 (1300)
||||+||++|++.|.+.|++..+++|+|+||||++++..||+|++|++|++++.|+|++|+++ ++.|+++++.+..
T Consensus 502 Epts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~-~~~y~~l~~~~~~ 577 (592)
T PRK10790 502 EATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAA-QGRYWQMYQLQLA 577 (592)
T ss_pred CCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhC-CCHHHHHHHHHhh
Confidence 999999999999999999998889999999999999999999999999999999999999976 6899999987654
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-61 Score=604.27 Aligned_cols=389 Identities=24% Similarity=0.344 Sum_probs=341.1
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhhchHHHHHhcchHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 898 ARELSRLVGVCKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFHIAGAMEWLCFRLDMLSSLTFAFSLV 977 (1300)
Q Consensus 898 ~r~l~rl~~~~~sp~~~~~~E~l~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~ 977 (1300)
.++..+......+...+++.|.++|+.+||+|+.++.+.+++.+..+...+..........+.....+++..+...++++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 268 (582)
T PRK11176 189 FRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLY 268 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444556677889999999999999999999999999999888888777776666666666666665544433333
Q ss_pred H-HHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccCCCCCCCCCCceEE
Q 000755 978 L-LISIPKGVIEPAIAGLAVTYGLNLNMLQAWVIWNLCNLENKIISVERILQYTCISSEPPLVIEESRPDCSWPTHGEVD 1056 (1300)
Q Consensus 978 ~-~~~~~~g~~~~~~~gl~l~~~~~~~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~i~ 1056 (1300)
+ ......|.+++|.+.+++++...+..++..+...+..++....+.+|+.++.+.+++.+. ... ...|..+.|+
T Consensus 269 ~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~---~~~--~~~~~~~~i~ 343 (582)
T PRK11176 269 AASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDE---GKR--VIERAKGDIE 343 (582)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCC---CCc--CCCCCCCeEE
Confidence 3 234556889999999999999999999999999999999999999999999887655321 111 1123456799
Q ss_pred EEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEEEc
Q 000755 1057 ILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIP 1136 (1300)
Q Consensus 1057 ~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~vp 1136 (1300)
++||+|+|+++.+++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+|+++++.+++|++++|+|
T Consensus 344 ~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~ 423 (582)
T PRK11176 344 FRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVS 423 (582)
T ss_pred EEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEc
Confidence 99999999876567999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccHHHhcCCC--CCCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEE
Q 000755 1137 QDPTMFEGTVRNNLDPL--EEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLV 1214 (1300)
Q Consensus 1137 Q~~~lf~gTvr~Nl~~~--~~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~~iLl 1214 (1300)
|||.+|++|+|+|+... +.++|++++++++.++++++++++|+||||.+||+|.+||||||||++|||||+++|+|||
T Consensus 424 Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ili 503 (582)
T PRK11176 424 QNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILI 503 (582)
T ss_pred cCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEE
Confidence 99999999999999864 2479999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhccCEEEEEeCCEEEEecChhhHHhcCCChHHHHHHHHh
Q 000755 1215 LDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLVAEYT 1292 (1300)
Q Consensus 1215 LDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~~D~v~vl~~G~i~e~g~~~~l~~~~~~~f~~l~~~~~ 1292 (1300)
||||||+||++|++.+.+.|++..+++|+|+||||++.+..||+|++|++|+++|.|+|++++++ ++.|++|++++.
T Consensus 504 lDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~-~~~y~~l~~~~~ 580 (582)
T PRK11176 504 LDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQ-NGVYAQLHKMQF 580 (582)
T ss_pred EECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhC-CChHHHHHHHHh
Confidence 99999999999999999999998788999999999999999999999999999999999999975 689999998653
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-63 Score=555.20 Aligned_cols=374 Identities=24% Similarity=0.393 Sum_probs=331.8
Q ss_pred HHHHHhhchHHHHHhcchHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCcccHHHHH
Q 000755 915 HFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFHIAGAMEWLCFRLDMLSSLTFA-FSLVLLISIPKGVIEPAIAG 993 (1300)
Q Consensus 915 ~~~E~l~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~-~~~~~~~~~~~g~~~~~~~g 993 (1300)
.-.+++-..+|+|-|++|+.-.++..+.++++++..++.......+...-+.+..+... .+++..+.+..+..+.|...
T Consensus 400 r~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfV 479 (790)
T KOG0056|consen 400 RQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFV 479 (790)
T ss_pred hhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeeeeeeecccccccee
Confidence 34578889999999999999999999999999988877766655555444443333222 22333344457788899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccCCCCCCCCCCceEEEEeeeeeeCCCCCccee
Q 000755 994 LAVTYGLNLNMLQAWVIWNLCNLENKIISVERILQYTCISSEPPLVIEESRPDCSWPTHGEVDILNLQVRYAPHLPLVLR 1073 (1300)
Q Consensus 994 l~l~~~~~~~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~i~~~~v~~~y~~~~~~vL~ 1073 (1300)
+..+|.+++-++++|+...+..++++++-+|++.+.++.++|-. +....++---.+|.|+|+||+|.|+++. |||+
T Consensus 480 lf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVv---d~P~a~pl~~~~G~i~fsnvtF~Y~p~k-~vl~ 555 (790)
T KOG0056|consen 480 LFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVV---DLPGAPPLKVTQGKIEFSNVTFAYDPGK-PVLS 555 (790)
T ss_pred hHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhh---cCCCCCCccccCCeEEEEEeEEecCCCC-ceee
Confidence 99999999999999999999999999999999999987655432 2111121223579999999999999875 6999
Q ss_pred eeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEEEcCCCCCCcccHHHhcCCC
Q 000755 1074 GLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPL 1153 (1300)
Q Consensus 1074 ~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~vpQ~~~lf~gTvr~Nl~~~ 1153 (1300)
||||+++||+.+|+|||+|+||||++++|+|+++.++|.|.|||+||+++..+.||+.||+||||.+||+.||..|+.+.
T Consensus 556 disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIrya 635 (790)
T KOG0056|consen 556 DISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYA 635 (790)
T ss_pred cceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred -CCCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHH
Q 000755 1154 -EEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQ 1232 (1300)
Q Consensus 1154 -~~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~ 1232 (1300)
...+|||+.+|.+.++++|.|.+.|+|++|.|||+|-.||||||||+++||++|++|.|++|||+||+||..|++.||.
T Consensus 636 k~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQa 715 (790)
T KOG0056|consen 636 KPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQA 715 (790)
T ss_pred CCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHH
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCcEEEEEeCChhhhhccCEEEEEeCCEEEEecChhhHHhcCCChHHHHHHHHh
Q 000755 1233 TLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLVAEYT 1292 (1300)
Q Consensus 1233 ~l~~~~~~~Tvi~iaHrl~~i~~~D~v~vl~~G~i~e~g~~~~l~~~~~~~f~~l~~~~~ 1292 (1300)
.+.+..+++|.|+||||++|+.++|.|+|+++|+|+|.|+|+||+.+++|.|++||+.+.
T Consensus 716 aL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Ya~MWq~qq 775 (790)
T KOG0056|consen 716 ALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYADMWQAQQ 775 (790)
T ss_pred HHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCcHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999996544
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-61 Score=617.17 Aligned_cols=391 Identities=25% Similarity=0.316 Sum_probs=335.5
Q ss_pred hhhHHHHHHHHHHhhhhhhHHHHHHHHhhchHHHHHhcchHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 893 YYIPSARELSRLVGVCKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFHIAGAMEWLCFRLDMLSSLTF 972 (1300)
Q Consensus 893 ~y~~~~r~l~rl~~~~~sp~~~~~~E~l~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~ 972 (1300)
.+.+..++..+......+...+++.|+++|+.+||+|+.|+++.+++.+..+...+..+.......+......++..+..
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (708)
T TIGR01193 314 LFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAVTKLILN 393 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666666677888999999999999999999999999998888777666655544444333333333322222
Q ss_pred HHHHHH-HHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccCCCCCCCCC
Q 000755 973 AFSLVL-LISIPKGVIEPAIAGLAVTYGLNLNMLQAWVIWNLCNLENKIISVERILQYTCISSEPPLVIEESRPDCSWPT 1051 (1300)
Q Consensus 973 ~~~~~~-~~~~~~g~~~~~~~gl~l~~~~~~~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~ 1051 (1300)
.+++++ ...+..|.++.|.+..+.++...+..++..+...+.+++....+++|+.++++.++|.+.. ......++.
T Consensus 394 i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~---~~~~~~~~~ 470 (708)
T TIGR01193 394 VVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINK---KKRTELNNL 470 (708)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccc---ccccCCCCC
Confidence 222222 2344588999999999999999999999999999999999999999999999887664321 111122345
Q ss_pred CceEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcc
Q 000755 1052 HGEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSR 1131 (1300)
Q Consensus 1052 ~g~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~ 1131 (1300)
.|.|+++||+|+|+++ +++|+|+||+|++||++||||+||||||||+++|+|+++|++|+|++||+|+++++.+++|++
T Consensus 471 ~~~I~~~~vsf~y~~~-~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~ 549 (708)
T TIGR01193 471 NGDIVINDVSYSYGYG-SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQF 549 (708)
T ss_pred CCcEEEEEEEEEcCCC-CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHh
Confidence 6789999999999744 569999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEcCCCCCCcccHHHhcCCC--CCCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccC
Q 000755 1132 LSIIPQDPTMFEGTVRNNLDPL--EEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKK 1209 (1300)
Q Consensus 1132 i~~vpQ~~~lf~gTvr~Nl~~~--~~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~ 1209 (1300)
++||||||.+|+||||||+.+. .+.+|++++++++.+++++++.++|.||||.++|+|.+||||||||++||||++++
T Consensus 550 i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~ 629 (708)
T TIGR01193 550 INYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTD 629 (708)
T ss_pred eEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhC
Confidence 9999999999999999999875 46889999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhccCEEEEEeCCEEEEecChhhHHhcCCChHHHHHH
Q 000755 1210 SKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLVA 1289 (1300)
Q Consensus 1210 ~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~~D~v~vl~~G~i~e~g~~~~l~~~~~~~f~~l~~ 1289 (1300)
|+|||||||||+||+++++.+++.|++. +++|+|+||||++++..||+|++|++|+++|.|+|++++++ ++.|++|++
T Consensus 630 p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~~-~~~y~~l~~ 707 (708)
T TIGR01193 630 SKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDR-NGFYASLIH 707 (708)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHhc-CCcHHHHhh
Confidence 9999999999999999999999999874 68999999999999999999999999999999999999975 688999875
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-59 Score=581.03 Aligned_cols=512 Identities=18% Similarity=0.156 Sum_probs=378.0
Q ss_pred HHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 292 KALFF-SAWKEIVFTAILALLYTLANYVGPYLIDTFVQYLNGEREFKNEGYVLVSTFFVAKIVECLAQRHWMFRLQVAGI 370 (1300)
Q Consensus 292 ~~l~~-~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~g~ 370 (1300)
..+++ .+++.+++++++.++..++..+.|++++.+++....... ...+.+++ + .++..++.....+...+.+.
T Consensus 9 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~--~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~ 82 (555)
T TIGR01194 9 LALLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFLGQ--GSLFSFGG-L---CLLALLFRIGADIFPAYAGM 82 (555)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc--hHHHHHHH-H---HHHHHHHHHHHHHHHHHHHH
Confidence 33667 888899999999999999999999999988764211110 11111111 1 12223344445555677889
Q ss_pred HHHHHHHHHHHHHHhcCCchhhcCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 000755 371 KMRSVLVSMVYNKGLTLSCQAKQSYTSGEIINFMTVDAERIGDFGWYMHDPWLVILQVSLALL-ILYKNLGLASIAALFA 449 (1300)
Q Consensus 371 ~ir~~L~~~Iy~K~L~ls~~~~~~~~~G~Ivnl~s~Dv~~i~~~~~~~~~~~~~~l~i~~~l~-lL~~~lg~~~l~~l~~ 449 (1300)
++...++..+|+|.++++...++++++|++++++++|++.+++++..+.......+.++++++ +++..+.++.+ .+++
T Consensus 83 ~~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~li-~l~~ 161 (555)
T TIGR01194 83 HIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFIFPPIAIALAIFFFCIAYLAYLSVPMFAI-TISA 161 (555)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHH
Confidence 999999999999999999999999999999999999999999976544444444444444433 33444444333 3333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 450 TVLIMLTNFPLGRLQENFQDKLMGSKDKRMKVTSEILRNMRILKLQGWEM--KFLSKIIELRKIEAGWLKKFLYTGAMTS 527 (1300)
Q Consensus 450 ~~l~~~~~~~~~k~~~~~~~~~~~~~d~r~~~~~E~L~~ir~IK~~~~E~--~f~~~i~~~R~~E~~~l~~~~~~~~~~~ 527 (1300)
+++.+++..+..++.++...+.++..++..+.+.|.++|++++|.++.++ ...+++.+..+...+...+.........
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (555)
T TIGR01194 162 IIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFIAAE 241 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444455566667777788888899999999999999999999854 3344443322211111111111111100
Q ss_pred HHHHHHHHHHHHHHHHHHHH---hcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc
Q 000755 528 FVFWGAPTFVSVATFGACML---LGIPLESGKILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIASFLCLDDLQSDV 604 (1300)
Q Consensus 528 ~~~~~~p~~v~~~~f~~~~~---~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~ 604 (1300)
...... ..+.++.+++ ..+.++.|.+++++.+...+..|+..+...+..+.++++|++||.++++.++.++..
T Consensus 242 ~~~~~~----~~~~~~~~~~~~~~~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~ 317 (555)
T TIGR01194 242 NFGQLL----FFLLIGCALFAAAMFASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPE 317 (555)
T ss_pred HHHHHH----HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence 100111 1111111111 125789999999999999999999999999999999999999999998632211100
Q ss_pred ---ccCC-----CCCCCcceEEEEeEEEEecCCC--CCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCcc
Q 000755 605 ---VEKH-----PRGSSETAIEIVDGNFAWDISS--NNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISG 674 (1300)
Q Consensus 605 ---~~~~-----~~~~~~~~I~i~~~~fs~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G 674 (1300)
.+.. +.......|+++|++|+|+... .+++|+|+||++++|++++|+||||||||||+++|+|+++|++|
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G 397 (555)
T TIGR01194 318 LELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEG 397 (555)
T ss_pred ccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 0000 1111235799999999997431 24699999999999999999999999999999999999999999
Q ss_pred EEEEcCe-------------EEEEecCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCC
Q 000755 675 TLKLCGT-------------KAYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGIN 741 (1300)
Q Consensus 675 ~i~~~g~-------------~ayv~Q~~~l~~~Ti~eNI~fg~~~~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~ 741 (1300)
+|.++|. ++||+|+|++|++|+++|+ ....++++.+++++.++++++++.+|+|++|. .+
T Consensus 398 ~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~--~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-----~~ 470 (555)
T TIGR01194 398 EILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE--GEHASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TA 470 (555)
T ss_pred EEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc--ccchhHHHHHHHHHHcCCchhhcccccccCCc-----cc
Confidence 9999883 5899999999999999995 23457788899999999999999999999984 78
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhh-cCCcEEEEEecCCCccccCCEEEEEeCCeEEE
Q 000755 742 LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LRSKTVIYVTHQVEFLPAADLILVMKDGKITQ 820 (1300)
Q Consensus 742 LSGGQkqRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~-l~~~TvIlvtH~~~~l~~~d~i~~l~~G~i~~ 820 (1300)
|||||||||+||||++++|+|+|||||||+||+++++.+.+.++... .+++|+|+||||++.+..||+|++|++|++++
T Consensus 471 LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~ 550 (555)
T TIGR01194 471 LSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVK 550 (555)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999987655433 46899999999999999999999999999986
Q ss_pred e
Q 000755 821 A 821 (1300)
Q Consensus 821 ~ 821 (1300)
.
T Consensus 551 ~ 551 (555)
T TIGR01194 551 D 551 (555)
T ss_pred e
Confidence 3
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-59 Score=537.53 Aligned_cols=529 Identities=21% Similarity=0.279 Sum_probs=430.4
Q ss_pred chhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 288 FKLTKALFFSAWKEIVFTAILALLYTLANYVGPYLIDTFVQYLNGEREFKNEGYVLVSTFFVAKIVECLAQRHWMFRLQV 367 (1300)
Q Consensus 288 ~~l~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~ 367 (1300)
.....+.+-.+++.++..++++.+-.+..+.+|+.+-++-|.+-...+.. ....+.++.+...+++.+++....+...|
T Consensus 11 ~~~~~a~l~~~r~a~~~v~lfS~~INiL~L~~~lyMLQVyDRVL~S~s~~-TLv~Ltvlal~ly~~~glLd~iR~~~l~R 89 (580)
T COG4618 11 KNLLAAVLAANRRAFIGVGLFSAVINLLALTGPLYMLQVYDRVLPSRSVP-TLVMLTVLALGLYAFQGLLDAIRSRVLVR 89 (580)
T ss_pred CchhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhccCCCcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677778888888899999999999999999888888775543322 22334444455566677888888888999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCchhhcCCCHHHHHHHHHHHHHHHHHHHH------HhhHHHHHHHHHHHHHHHHHHHHHH
Q 000755 368 AGIKMRSVLVSMVYNKGLTLSCQAKQSYTSGEIINFMTVDAERIGDFGW------YMHDPWLVILQVSLALLILYKNLGL 441 (1300)
Q Consensus 368 ~g~~ir~~L~~~Iy~K~L~ls~~~~~~~~~G~Ivnl~s~Dv~~i~~~~~------~~~~~~~~~l~i~~~l~lL~~~lg~ 441 (1300)
+|.++...|...||.-+.+.+..........+.++ |.+.+..|.. .|..+|. |+-+ ..++++.-.+|+
T Consensus 90 ig~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~Lr----DL~qvR~Fltg~g~~A~fDaPW~-P~yl-~v~fl~Hp~lG~ 163 (580)
T COG4618 90 IGERLDRQLNGPVFAASFSAPLLRRGSGDGLQPLR----DLDQVRQFLTGTGLTAFFDAPWM-PLYL-AVIFLFHPWLGL 163 (580)
T ss_pred HHHHHHHHhccHHHHHHHhhHHhhcCCCccccchh----hHHHHHHHHcCCCcchhcCCchH-HHHH-HHHHHHHHHHHH
Confidence 99999999999999999765554443333444444 9999998853 3444554 5433 334556667898
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 442 ASIAALFATVLIMLTNFPLGRLQENFQDKLMGSKDKRMKVTSEILRNMRILKLQGWEMKFLSKIIELRKIEAGWLKKFLY 521 (1300)
Q Consensus 442 ~~l~~l~~~~l~~~~~~~~~k~~~~~~~~~~~~~d~r~~~~~E~L~~ir~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~ 521 (1300)
.++++.++++.+..+|-.++++ -.++-.+..-++.....-.++|.++|+.+|+.....++|.+.....+++......
T Consensus 164 ~a~~ga~iLv~la~ln~~~t~~---p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd 240 (580)
T COG4618 164 IALAGAIILVVLALLNERATRK---PLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASD 240 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHH
Confidence 8888887777777777665543 3445566677888999999999999999999999999998877776666655444
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 000755 522 TGAMTSFVFWGAPTF--VSVATFGACMLLGIPLESGKILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIASFLCLDD 599 (1300)
Q Consensus 522 ~~~~~~~~~~~~p~~--v~~~~f~~~~~~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e 599 (1300)
.........-..-.+ ..++..|+|+++.+++|+|.+++...+..-...|+......|.++..++.|++|++++|....
T Consensus 241 ~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p 320 (580)
T COG4618 241 RNGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELP 320 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 333333222222222 334566788889999999999999988888889999999999999999999999999997543
Q ss_pred CCcccccCCCCCCCcceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEc
Q 000755 600 LQSDVVEKHPRGSSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLC 679 (1300)
Q Consensus 600 ~~~~~~~~~~~~~~~~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~ 679 (1300)
... +..+.+..+..+.++++++.- ++.++|+++|+||++.+||-++||||||||||||.++|.|..+|.+|.|++|
T Consensus 321 ~~~---~~m~LP~P~g~L~Ve~l~~~P-Pg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLD 396 (580)
T COG4618 321 AAA---ERMPLPAPQGALSVERLTAAP-PGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLD 396 (580)
T ss_pred ccc---CCCCCCCCCceeeEeeeeecC-CCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEec
Confidence 322 223344456789999999965 4667899999999999999999999999999999999999999999999999
Q ss_pred C-------------eEEEEecCCcCCCCCHHHHHh-cCCCCCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHH
Q 000755 680 G-------------TKAYVAQSPWIQSGNIEDNIL-FGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGG 745 (1300)
Q Consensus 680 g-------------~~ayv~Q~~~l~~~Ti~eNI~-fg~~~~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGG 745 (1300)
| .+||.||+..+|.|||+|||. |+.+.|++++-++.+.++.++-+-.+|+|++|.|||.|..||||
T Consensus 397 ga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgG 476 (580)
T COG4618 397 GADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGG 476 (580)
T ss_pred chhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCch
Confidence 8 479999999999999999996 77789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChH
Q 000755 746 QKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYN 825 (1300)
Q Consensus 746 QkqRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~~d~i~~l~~G~i~~~g~~~ 825 (1300)
|||||+||||+|.||.+++||||-|+||.+.++.+.+.+..-..+|.|+|+||||++.+..+|+|++|++|++...|+-+
T Consensus 477 QRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~ 556 (580)
T COG4618 477 QRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPRE 556 (580)
T ss_pred HHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHH
Confidence 99999999999999999999999999999999999765555556799999999999999999999999999999999999
Q ss_pred HHHhc
Q 000755 826 DILNS 830 (1300)
Q Consensus 826 ~l~~~ 830 (1300)
|.+++
T Consensus 557 eVLa~ 561 (580)
T COG4618 557 EVLAK 561 (580)
T ss_pred HHHHH
Confidence 98753
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-61 Score=610.86 Aligned_cols=383 Identities=25% Similarity=0.337 Sum_probs=332.3
Q ss_pred hhHHHHHHHHHHhhhhhhHHHHHHHHhhchHHHHHhcchHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 894 YIPSARELSRLVGVCKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFHIAGAMEWLCFRLDMLSSLTFA 973 (1300)
Q Consensus 894 y~~~~r~l~rl~~~~~sp~~~~~~E~l~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~ 973 (1300)
+.+..++..+......+...+++.|+++|+.+||+|+.|+.+.+++.+..++..+..........+......++..+...
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (694)
T TIGR03375 305 LQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSV 384 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555566778899999999999999999999999999998888877766665555555444444444333222
Q ss_pred HHHHH-HHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccCCCCCCCCCC
Q 000755 974 FSLVL-LISIPKGVIEPAIAGLAVTYGLNLNMLQAWVIWNLCNLENKIISVERILQYTCISSEPPLVIEESRPDCSWPTH 1052 (1300)
Q Consensus 974 ~~~~~-~~~~~~g~~~~~~~gl~l~~~~~~~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~ 1052 (1300)
+.+++ ...+..|.++.|.+..+++|...+..++..+...+.+++....+.+|+.++++.++|.+.. .......+..
T Consensus 385 ~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~---~~~~~~~~~~ 461 (694)
T TIGR03375 385 AIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEG---TRFLHRPRLQ 461 (694)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC---CCCCCCCCcc
Confidence 22222 2334578899999999999999999999999999999999999999999999887664311 1111112345
Q ss_pred ceEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhccc
Q 000755 1053 GEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRL 1132 (1300)
Q Consensus 1053 g~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i 1132 (1300)
+.|+++||+|+|++..+++|+|+||+|++||++||||+||||||||+++|+|+++|++|+|.+||+|+++++.+++|+++
T Consensus 462 ~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i 541 (694)
T TIGR03375 462 GEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNI 541 (694)
T ss_pred ceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhcc
Confidence 78999999999976556799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCCcccHHHhcCCCC-CCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCC
Q 000755 1133 SIIPQDPTMFEGTVRNNLDPLE-EYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSK 1211 (1300)
Q Consensus 1133 ~~vpQ~~~lf~gTvr~Nl~~~~-~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~~ 1211 (1300)
+||||||.+|+|||+||+.+.. +.++++++++++.+++++++.++|.|+||.++|+|.+||||||||++||||++++|+
T Consensus 542 ~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~ 621 (694)
T TIGR03375 542 GYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPP 621 (694)
T ss_pred EEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999998765 489999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhccCEEEEEeCCEEEEecChhhHHhc
Q 000755 1212 VLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLEN 1279 (1300)
Q Consensus 1212 iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~~D~v~vl~~G~i~e~g~~~~l~~~ 1279 (1300)
|||||||||+||+++++.|++.|++..+++|+|+||||++++..||+|++|++|+++|.|+|++|+++
T Consensus 622 iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 622 ILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 99999999999999999999999998889999999999999999999999999999999999999864
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-60 Score=593.08 Aligned_cols=392 Identities=24% Similarity=0.321 Sum_probs=330.6
Q ss_pred hhhHHHHHHHHHHhhhhhhHHHHHHHHhhchHHHHHhcchHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 893 YYIPSARELSRLVGVCKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFHIAGAMEWLCFRLDMLSSLTF 972 (1300)
Q Consensus 893 ~y~~~~r~l~rl~~~~~sp~~~~~~E~l~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~ 972 (1300)
++.+..+...+......+.+.+.+.|.++|+.+||+|+.++++.+++.+..+++.+..........+.....+++..+..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (574)
T PRK11160 180 LFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGLSQALMILANGLTV 259 (574)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666777888999999999999999999999999999988888777766666555555555555554443
Q ss_pred HHHHHHHHHhcCCcccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccCCCCCCCCC
Q 000755 973 AFSLVLLISIPKGVIEPAIAGLAVTYGLN-LNMLQAWVIWNLCNLENKIISVERILQYTCISSEPPLVIEESRPDCSWPT 1051 (1300)
Q Consensus 973 ~~~~~~~~~~~~g~~~~~~~gl~l~~~~~-~~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~ 1051 (1300)
.+.+++......|.++.|....++.|... ...++..+...+..++....|.+|+.++++.+++.+.. + ..+ ..+.
T Consensus 260 ~~i~~~g~~~~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~~-~-~~~--~~~~ 335 (574)
T PRK11160 260 VLMLWLAAGGVGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTFP-T-TST--AAAD 335 (574)
T ss_pred HHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC-c-ccC--CCCC
Confidence 33333322223567777776666666433 34456666777888889999999999999876553211 0 111 1134
Q ss_pred CceEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcc
Q 000755 1052 HGEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSR 1131 (1300)
Q Consensus 1052 ~g~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~ 1131 (1300)
.+.|+++||+++|+++.+++|+|+||+|++||++|||||||||||||+++|+|+++|++|+|.+||+|+++++.+++|++
T Consensus 336 ~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 415 (574)
T PRK11160 336 QVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQA 415 (574)
T ss_pred CCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhh
Confidence 57899999999997654579999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEcCCCCCCcccHHHhcCCC-CCCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCC
Q 000755 1132 LSIIPQDPTMFEGTVRNNLDPL-EEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKS 1210 (1300)
Q Consensus 1132 i~~vpQ~~~lf~gTvr~Nl~~~-~~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~ 1210 (1300)
++|+||||.+|++|++||+... .+.+|++++++++.+++++++.+ |+||||.+||+|.+||||||||++||||++++|
T Consensus 416 i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrqRialARall~~~ 494 (574)
T PRK11160 416 ISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDA 494 (574)
T ss_pred eeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999865 46799999999999999999999 999999999999999999999999999999999
Q ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhccCEEEEEeCCEEEEecChhhHHhcCCChHHHHHHH
Q 000755 1211 KVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLVAE 1290 (1300)
Q Consensus 1211 ~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~~D~v~vl~~G~i~e~g~~~~l~~~~~~~f~~l~~~ 1290 (1300)
+|||||||||+||+++++.|++.|++..+++|+|+||||++++..||+|++|++|+++|.|+|++|+++ ++.|++|++.
T Consensus 495 ~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~g~y~~l~~~ 573 (574)
T PRK11160 495 PLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQ-QGRYYQLKQR 573 (574)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHhc-CcHHHHHHhh
Confidence 999999999999999999999999998889999999999999999999999999999999999999975 7899998863
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-61 Score=593.68 Aligned_cols=422 Identities=25% Similarity=0.346 Sum_probs=314.0
Q ss_pred eEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEE-----------EcCe--------
Q 000755 621 DGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLK-----------LCGT-------- 681 (1300)
Q Consensus 621 ~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~-----------~~g~-------- 681 (1300)
+++.+|.. ...+|++++ .+++|++++|+||||||||||+++|+|+++|++|+|. ++|+
T Consensus 78 ~~~~~yg~--~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~ 154 (590)
T PRK13409 78 EPVHRYGV--NGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKK 154 (590)
T ss_pred CceEEecC--CceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHH
Confidence 47888862 246899999 8999999999999999999999999999999999996 5541
Q ss_pred -------E----EEEecCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHH
Q 000755 682 -------K----AYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRI 750 (1300)
Q Consensus 682 -------~----ayv~Q~~~l~~~Ti~eNI~fg~~~~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRi 750 (1300)
+ .|++|.|.++.+|++||+.+.. ..++.+++++..++... ......+||||||||+
T Consensus 155 ~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~--~~~~~~~~l~~l~l~~~-----------~~~~~~~LSgGe~qrv 221 (590)
T PRK13409 155 LYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVD--ERGKLDEVVERLGLENI-----------LDRDISELSGGELQRV 221 (590)
T ss_pred HhccCcceeecccchhhhhhhhcchHHHHHHhhh--HHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHHHH
Confidence 2 3555677788899999997531 23456666666665432 2445568999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHHHh
Q 000755 751 QIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDILN 829 (1300)
Q Consensus 751 aLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 829 (1300)
+||||++++|++|+||||||+||++....+++ .+..+.+++|+|+|||+++.+.. ||+|++|+++. |.|..+..
T Consensus 222 ~ia~al~~~p~lllLDEPts~LD~~~~~~l~~-~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~~----g~~g~~~~ 296 (590)
T PRK13409 222 AIAAALLRDADFYFFDEPTSYLDIRQRLNVAR-LIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGEP----GAYGVVSK 296 (590)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCc----cccceecc
Confidence 99999999999999999999999999998875 45554448999999999999876 99999997641 11110000
Q ss_pred cCchHHHHHHHHHHHhhhhcccCCCCccccccccccCCCccccccccccCccccccccchhhhhhhHHHHHHHHHHhhhh
Q 000755 830 SGTDFMVLVGAHQQALSALDSIEGGPVSERISMNKENGGMDTTNGVTMKEGNEDIQTDKVDEQYYIPSARELSRLVGVCK 909 (1300)
Q Consensus 830 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~~lp~grnr~s~D~v~~~~y~~~~r~l~rl~~~~~ 909 (1300)
.. . .++
T Consensus 297 ~~-----------~------------------------------------------------------~~~--------- 302 (590)
T PRK13409 297 PK-----------G------------------------------------------------------VRV--------- 302 (590)
T ss_pred hh-----------H------------------------------------------------------HHH---------
Confidence 00 0 000
Q ss_pred hhHHHHHHHHhhchHHHHHhcchHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccH
Q 000755 910 APVIQHFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFHIAGAMEWLCFRLDMLSSLTFAFSLVLLISIPKGVIEP 989 (1300)
Q Consensus 910 sp~~~~~~E~l~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~~~~~~g~~~~ 989 (1300)
...+.+.| +. ..
T Consensus 303 -----~i~~~~~~------~~----------------------------------------------------~~----- 314 (590)
T PRK13409 303 -----GINEYLKG------YL----------------------------------------------------PE----- 314 (590)
T ss_pred -----hHHHHHHh------cc----------------------------------------------------hh-----
Confidence 00000000 00 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccCCCCCCCCCCceEEEEeeeeeeCCCCC
Q 000755 990 AIAGLAVTYGLNLNMLQAWVIWNLCNLENKIISVERILQYTCISSEPPLVIEESRPDCSWPTHGEVDILNLQVRYAPHLP 1069 (1300)
Q Consensus 990 ~~~gl~l~~~~~~~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~i~~~~v~~~y~~~~~ 1069 (1300)
++ .|+.+ ++. ..+...++..-+....++++|++++|++.
T Consensus 315 ---------------------------e~-----~~~~~------~~~-~~~~~~~~~~~~~~~~l~~~~ls~~~~~~-- 353 (590)
T PRK13409 315 ---------------------------EN-----MRIRP------EPI-EFEERPPRDESERETLVEYPDLTKKLGDF-- 353 (590)
T ss_pred ---------------------------hh-----hhccc------cCc-ceecCCCccccCCceEEEEcceEEEECCE--
Confidence 00 00000 000 00000000000122359999999999652
Q ss_pred cceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEEEcCCCCCC-cccHHH
Q 000755 1070 LVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDPTMF-EGTVRN 1148 (1300)
Q Consensus 1070 ~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~vpQ~~~lf-~gTvr~ 1148 (1300)
.|+++||+|++||++||+|+||||||||+++|+|+++|++|+|.++ .+++|+||++.++ +.||++
T Consensus 354 -~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i~y~~Q~~~~~~~~tv~e 419 (590)
T PRK13409 354 -SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKISYKPQYIKPDYDGTVED 419 (590)
T ss_pred -EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeEEEecccccCCCCCcHHH
Confidence 5999999999999999999999999999999999999999999986 1599999998754 569999
Q ss_pred hcCCC-CCC-CHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCcCCCHHH
Q 000755 1149 NLDPL-EEY-KDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTAT 1226 (1300)
Q Consensus 1149 Nl~~~-~~~-~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~~iLlLDEpTs~lD~~t 1226 (1300)
|+... ... .+..+.++++.+++.+...+ ...+||||||||++|||||+++|++|||||||++||+.+
T Consensus 420 ~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~-----------~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~ 488 (590)
T PRK13409 420 LLRSITDDLGSSYYKSEIIKPLQLERLLDK-----------NVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQ 488 (590)
T ss_pred HHHHHhhhcChHHHHHHHHHHCCCHHHHhC-----------CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 98642 122 23346678888888654333 335689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcC--CcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecC
Q 000755 1227 DNLIQQTLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGIIEEYDS 1272 (1300)
Q Consensus 1227 ~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~ 1272 (1300)
...+.+.|++..+ ++|||+|||+++.+.. ||||++|++ ++...|+
T Consensus 489 ~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 489 RLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 9999999998643 6899999999999987 999999965 7777665
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-57 Score=616.88 Aligned_cols=474 Identities=20% Similarity=0.194 Sum_probs=360.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchhhcCCCHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 364 RLQVAGIKMRSVLVSMVYNKGLTLSCQAKQSYTSGEIINFMTVDAERIGDFGW-YMHDPWLVILQVSLALLILYKNLGLA 442 (1300)
Q Consensus 364 ~~~~~g~~ir~~L~~~Iy~K~L~ls~~~~~~~~~G~Ivnl~s~Dv~~i~~~~~-~~~~~~~~~l~i~~~l~lL~~~lg~~ 442 (1300)
...+.+.+.-..+...+|++.++.+...+++.++|+|+|+++.|++.+.+... .+..+....+.+++.+++++...++.
T Consensus 948 ~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l 1027 (1490)
T TIGR01271 948 PLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYI 1027 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677888888899999999999999999999999999999999998654 34444445555555554444333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 443 SIAALFATVLIMLTNFPLGRLQENFQDKLMGSKDKRMKVTSEILRNMRILKLQGWEMKFLSKIIELRKIEAGWLKKFLYT 522 (1300)
Q Consensus 443 ~l~~l~~~~l~~~~~~~~~k~~~~~~~~~~~~~d~r~~~~~E~L~~ir~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~~ 522 (1300)
+++.+.++++++.+..++.+..+..++.....+....+.+.|.++|+.+||.|++|+.|.++..+.-+...+........
T Consensus 1028 ~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1107 (1490)
T TIGR01271 1028 FIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLST 1107 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23222222333333334444445555556667778889999999999999999999999988866543221111111000
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 000755 523 GAMTSF-VFWGAPTFVSVATFGACMLLGIPLESGKILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIASFLCLDDLQ 601 (1300)
Q Consensus 523 ~~~~~~-~~~~~p~~v~~~~f~~~~~~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~ 601 (1300)
..+..+ .......++..+.+ ..+.....++|.+-.++++...+..++..+...+..+..+.+|++||.+|++.++..
T Consensus 1108 ~~wl~~~~~~i~~~~~~~~~~--l~~~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~ 1185 (1490)
T TIGR01271 1108 LRWFQMRIDIIFVFFFIAVTF--IAIGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEE 1185 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 001000 00001011111111 111112345566666666666777888888889999999999999999999765432
Q ss_pred ccccc---------------CCCC--CCCcceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHH
Q 000755 602 SDVVE---------------KHPR--GSSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSC 664 (1300)
Q Consensus 602 ~~~~~---------------~~~~--~~~~~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ 664 (1300)
....+ ..++ -+..+.|+|+|++|+|+++ .+++|+|+||+|++||++||||++|||||||+++
T Consensus 1186 ~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~l 1264 (1490)
T TIGR01271 1186 PRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSA 1264 (1490)
T ss_pred ccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEEEEcCCCEEEEECCCCCCHHHHHHH
Confidence 21100 0000 1234579999999999753 4689999999999999999999999999999999
Q ss_pred HhccccCCccEEEEcC-------------eEEEEecCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhhccCCC
Q 000755 665 ILGEVPKISGTLKLCG-------------TKAYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGD 731 (1300)
Q Consensus 665 llG~~~~~~G~i~~~g-------------~~ayv~Q~~~l~~~Ti~eNI~fg~~~~~~~~~~vl~~~~l~~dl~~l~~Gd 731 (1300)
|+|+++ .+|+|.++| .++||||+|.+|+|||||||....++++++.+++++.|++.+.++.+|+|+
T Consensus 1265 L~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GL 1343 (1490)
T TIGR01271 1265 LLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKL 1343 (1490)
T ss_pred HhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCcccc
Confidence 999997 799999998 369999999999999999998777789999999999999999999999999
Q ss_pred cccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCccccCCEEE
Q 000755 732 QTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLIL 811 (1300)
Q Consensus 732 ~t~ige~g~~LSGGQkqRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~~d~i~ 811 (1300)
+|.|||+|.||||||||||+|||||+++|+|+|||||||+||++|++.|. +.++...+++|+|+||||++.+..||+|+
T Consensus 1344 dt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~-~~L~~~~~~~TvI~IaHRl~ti~~~DrIl 1422 (1490)
T TIGR01271 1344 DFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIR-KTLKQSFSNCTVILSEHRVEALLECQQFL 1422 (1490)
T ss_pred ccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHH-HHHHHHcCCCEEEEEecCHHHHHhCCEEE
Confidence 99999999999999999999999999999999999999999999988885 56677778999999999999999999999
Q ss_pred EEeCCeEEEecChHHHHhcCchHHHHHHHHH
Q 000755 812 VMKDGKITQAGKYNDILNSGTDFMVLVGAHQ 842 (1300)
Q Consensus 812 ~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~~ 842 (1300)
+|++|+|++.|+|++|++.++.|..++....
T Consensus 1423 vL~~G~ivE~g~p~~Ll~~~~~f~~l~~~~~ 1453 (1490)
T TIGR01271 1423 VIEGSSVKQYDSIQKLLNETSLFKQAMSAAD 1453 (1490)
T ss_pred EEECCEEEEeCCHHHHHcCCcHHHHHHHHhC
Confidence 9999999999999999988888888876544
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-59 Score=584.92 Aligned_cols=394 Identities=25% Similarity=0.334 Sum_probs=345.2
Q ss_pred hhhhHHHHHHHHHHhhhhhhHHHHHHHHhhchHHHHHhcchHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHH
Q 000755 892 QYYIPSARELSRLVGVCKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFHIAGAMEWLCFRLDMLSSLT 971 (1300)
Q Consensus 892 ~~y~~~~r~l~rl~~~~~sp~~~~~~E~l~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~ 971 (1300)
.++.+..++..+......+...+.+.|.++|+.+||+++.++++.+++.+..+...+..........+.....+++..+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (571)
T TIGR02203 172 RRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLA 251 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556666667788999999999999999999999999999999888887777766666666666555555443
Q ss_pred HHHHHHH-HHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccCCCCCCCC
Q 000755 972 FAFSLVL-LISIPKGVIEPAIAGLAVTYGLNLNMLQAWVIWNLCNLENKIISVERILQYTCISSEPPLVIEESRPDCSWP 1050 (1300)
Q Consensus 972 ~~~~~~~-~~~~~~g~~~~~~~gl~l~~~~~~~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp 1050 (1300)
..+.+++ ...+..|.+++|.+..+.+|...+..++..+...+..+.....+.+|+.++.+.+++.+.. ..+.. +
T Consensus 252 ~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~---~~~~~--~ 326 (571)
T TIGR02203 252 LAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTG---TRAIE--R 326 (571)
T ss_pred HHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC---CCCCC--C
Confidence 3333333 2345678899999999999999999999999999999999999999999999866553311 11111 2
Q ss_pred CCceEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhc
Q 000755 1051 THGEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS 1130 (1300)
Q Consensus 1051 ~~g~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~ 1130 (1300)
..+.|+++||+++|++..+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||+|+++++.+++|+
T Consensus 327 ~~~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~ 406 (571)
T TIGR02203 327 ARGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRR 406 (571)
T ss_pred CCCeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHh
Confidence 35689999999999765567999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEcCCCCCCcccHHHhcCCCC--CCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHcc
Q 000755 1131 RLSIIPQDPTMFEGTVRNNLDPLE--EYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLK 1208 (1300)
Q Consensus 1131 ~i~~vpQ~~~lf~gTvr~Nl~~~~--~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~ 1208 (1300)
+++|+||+|.+|+||+|+|+.... +.+|++++++++.+++++++.++|+||||.++|+|.+||||||||++||||+++
T Consensus 407 ~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~ 486 (571)
T TIGR02203 407 QVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLK 486 (571)
T ss_pred hceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence 999999999999999999998763 689999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhccCEEEEEeCCEEEEecChhhHHhcCCChHHHHH
Q 000755 1209 KSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLV 1288 (1300)
Q Consensus 1209 ~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~~D~v~vl~~G~i~e~g~~~~l~~~~~~~f~~l~ 1288 (1300)
+|+|++||||||+||.++++.|.+.|++..+++|+|+||||++.+..||+|++|++|++++.|++++++++ ++.|++++
T Consensus 487 ~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~-~~~~~~~~ 565 (571)
T TIGR02203 487 DAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLAR-NGLYAQLH 565 (571)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHc-CCHHHHHH
Confidence 99999999999999999999999999998889999999999999989999999999999999999999975 67999988
Q ss_pred HHH
Q 000755 1289 AEY 1291 (1300)
Q Consensus 1289 ~~~ 1291 (1300)
.++
T Consensus 566 ~~~ 568 (571)
T TIGR02203 566 NMQ 568 (571)
T ss_pred HHh
Confidence 765
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-59 Score=550.79 Aligned_cols=444 Identities=24% Similarity=0.333 Sum_probs=334.5
Q ss_pred ceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe-------------
Q 000755 615 TAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------- 681 (1300)
Q Consensus 615 ~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~------------- 681 (1300)
..++++|++.+|+ ..++|+|+||++.+||++|++|+||+|||||+|.|.|.|+|++|+|.++|+
T Consensus 7 ~ll~~~~i~K~Fg---gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~ 83 (500)
T COG1129 7 PLLELRGISKSFG---GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAA 83 (500)
T ss_pred ceeeeecceEEcC---CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhC
Confidence 3588999999997 468999999999999999999999999999999999999999999999985
Q ss_pred -EEEEecCCcCC-CCCHHHHHhcCCCC-------CHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHH
Q 000755 682 -KAYVAQSPWIQ-SGNIEDNILFGKPM-------DREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQI 752 (1300)
Q Consensus 682 -~ayv~Q~~~l~-~~Ti~eNI~fg~~~-------~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaL 752 (1300)
|+.|+|+.-+. +-||.|||.+|++. |..+.++..+. -++.+... -.......+||+||||-|+|
T Consensus 84 GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~-----~l~~lg~~--~~~~~~v~~LsiaqrQ~VeI 156 (500)
T COG1129 84 GIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARE-----LLARLGLD--IDPDTLVGDLSIAQRQMVEI 156 (500)
T ss_pred CcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHH-----HHHHcCCC--CChhhhhhhCCHHHHHHHHH
Confidence 58999999875 67999999999763 33333222211 12222111 11345566899999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecCh-HHHHhc
Q 000755 753 ARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKY-NDILNS 830 (1300)
Q Consensus 753 ARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~-~~l~~~ 830 (1300)
|||++.+++|+|||||||+|+.+..+++|+-+..-..+|.++|+|||+++.+.. ||+|.||+||+.+..++. .++-.
T Consensus 157 ArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~~~~- 235 (500)
T COG1129 157 ARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAETSE- 235 (500)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccCCCH-
Confidence 999999999999999999999999999997543334579999999999998765 999999999999876542 21100
Q ss_pred CchHHHHHHHHHHHhhhhcccCCCCccccccccccCCCccccccccccCccccccccchhhhhhhHHHHHHHHHHhhhhh
Q 000755 831 GTDFMVLVGAHQQALSALDSIEGGPVSERISMNKENGGMDTTNGVTMKEGNEDIQTDKVDEQYYIPSARELSRLVGVCKA 910 (1300)
Q Consensus 831 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~~lp~grnr~s~D~v~~~~y~~~~r~l~rl~~~~~s 910 (1300)
.+++
T Consensus 236 ----~~lv------------------------------------------------------------------------ 239 (500)
T COG1129 236 ----DELV------------------------------------------------------------------------ 239 (500)
T ss_pred ----HHHH------------------------------------------------------------------------
Confidence 0000
Q ss_pred hHHHHHHHHhhchHHHHHhcchHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHH
Q 000755 911 PVIQHFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFHIAGAMEWLCFRLDMLSSLTFAFSLVLLISIPKGVIEPA 990 (1300)
Q Consensus 911 p~~~~~~E~l~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~ 990 (1300)
+ ...|
T Consensus 240 ----------------~------------------------------------------------------~MvG----- 244 (500)
T COG1129 240 ----------------R------------------------------------------------------LMVG----- 244 (500)
T ss_pred ----------------H------------------------------------------------------HhhC-----
Confidence 0 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccCCCCCCCCCCceEEEEeeeeeeCCCCCc
Q 000755 991 IAGLAVTYGLNLNMLQAWVIWNLCNLENKIISVERILQYTCISSEPPLVIEESRPDCSWPTHGEVDILNLQVRYAPHLPL 1070 (1300)
Q Consensus 991 ~~gl~l~~~~~~~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~i~~~~v~~~y~~~~~~ 1070 (1300)
| +..+..+++ +..-+....++++|++..-
T Consensus 245 ----------------------------------r--~~~~~~~~~---------~~~~~~~~~l~v~~l~~~~------ 273 (500)
T COG1129 245 ----------------------------------R--ELEDLFPEP---------PEEGIGEPVLEVRNLSGGG------ 273 (500)
T ss_pred ----------------------------------c--chhhhcccc---------cccCCCCcEEEEecCCCCC------
Confidence 0 000000000 0000122357788877532
Q ss_pred ceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHH-HHhcccEEEcCCCC---CC-ccc
Q 000755 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLH-DLRSRLSIIPQDPT---MF-EGT 1145 (1300)
Q Consensus 1071 vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~-~lr~~i~~vpQ~~~---lf-~gT 1145 (1300)
.++|+||++++||++||.|--|||+|-|+++|+|..++.+|+|.+||+++.--+++ ..+..|+|||.|.. +| ..+
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~s 353 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMS 353 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCc
Confidence 58999999999999999999999999999999999999999999999998777655 57788999999873 44 459
Q ss_pred HHHhcCCC--CCCCHH-HHHHHHHHcCCcHHHHhh---cCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEeCCC
Q 000755 1146 VRNNLDPL--EEYKDE-EIWEALDKCQLGDEVRNK---EGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEAT 1219 (1300)
Q Consensus 1146 vr~Nl~~~--~~~~d~-~i~~~l~~~~l~~~i~~~---~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~~iLlLDEpT 1219 (1300)
|++|+... ..++.. -+...-++.-..++++++ ....+. ...+||||++||++|||+|..+|+||||||||
T Consensus 354 I~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~----~v~~LSGGNQQKVvlarwL~~~p~vLilDEPT 429 (500)
T COG1129 354 IAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQ----PIGTLSGGNQQKVVLARWLATDPKVLILDEPT 429 (500)
T ss_pred HHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccc----hhhcCCchhhhhHHHHHHHhcCCCEEEECCCC
Confidence 99998532 111000 011111111112222222 223333 34689999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhh
Q 000755 1220 ASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTK 1275 (1300)
Q Consensus 1220 s~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~ 1275 (1300)
.|+|..+.+.|.+.|++.. +|.+||+||.+++++.. ||||+||++|+++..-+.++
T Consensus 430 RGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~~ 487 (500)
T COG1129 430 RGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDREE 487 (500)
T ss_pred cCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEecccc
Confidence 9999999999999999976 57999999999999986 99999999999997544444
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-59 Score=594.38 Aligned_cols=388 Identities=25% Similarity=0.350 Sum_probs=340.3
Q ss_pred HHHHHHHhhhhhhHHHHHHHHhhchHHHHHhcchHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 899 RELSRLVGVCKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFHIAGAMEWLCFRLDMLSSLTFAFSLVL 978 (1300)
Q Consensus 899 r~l~rl~~~~~sp~~~~~~E~l~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~ 978 (1300)
+...+......+...+++.|+++|+.+||+|+.|+.+.+++.+..++..+..........+.....+++..+...+.+++
T Consensus 303 ~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~ 382 (694)
T TIGR01846 303 RKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWF 382 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 33444444566778899999999999999999999999999998888877777666666666665555554443333333
Q ss_pred -HHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccCCCCCCCCCCceEEE
Q 000755 979 -LISIPKGVIEPAIAGLAVTYGLNLNMLQAWVIWNLCNLENKIISVERILQYTCISSEPPLVIEESRPDCSWPTHGEVDI 1057 (1300)
Q Consensus 979 -~~~~~~g~~~~~~~gl~l~~~~~~~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~i~~ 1057 (1300)
...+..|.++.|.+.++.++...+..++..+...+.+++....+.+|+.++++.++|.... ...+. ....+.|++
T Consensus 383 g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~--~~~~~--~~~~~~i~~ 458 (694)
T TIGR01846 383 GAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA--GLAAL--PELRGAITF 458 (694)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC--CCCCC--CCCCCeEEE
Confidence 2344578899999999999999999999999999999999999999999999877664311 11111 123578999
Q ss_pred EeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEEEcC
Q 000755 1058 LNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQ 1137 (1300)
Q Consensus 1058 ~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~vpQ 1137 (1300)
+||+|+|+++.+++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|++||+|+++++.+++|++++||||
T Consensus 459 ~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q 538 (694)
T TIGR01846 459 ENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQ 538 (694)
T ss_pred EEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEcc
Confidence 99999998665679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccHHHhcCCC-CCCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 000755 1138 DPTMFEGTVRNNLDPL-EEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLD 1216 (1300)
Q Consensus 1138 ~~~lf~gTvr~Nl~~~-~~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~~iLlLD 1216 (1300)
||.+|++|++||+... .+.++++++++++.+++++++.++|.||||.++++|.+||||||||++||||++++|+|||||
T Consensus 539 ~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililD 618 (694)
T TIGR01846 539 ENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFD 618 (694)
T ss_pred CCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 9999999999999875 468899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhccCEEEEEeCCEEEEecChhhHHhcCCChHHHHHHHH
Q 000755 1217 EATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLVAEY 1291 (1300)
Q Consensus 1217 EpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~~D~v~vl~~G~i~e~g~~~~l~~~~~~~f~~l~~~~ 1291 (1300)
||||+||+++++.+.+.|++..+++|+|+||||++++..||+|++|++|++++.|+|++++++ ++.|++|++++
T Consensus 619 Epts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~~ 692 (694)
T TIGR01846 619 EATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLAL-QGLYARLWQQQ 692 (694)
T ss_pred CCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHc-CChHHHHHHhh
Confidence 999999999999999999998888999999999999999999999999999999999999975 68999998764
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-59 Score=542.26 Aligned_cols=375 Identities=26% Similarity=0.413 Sum_probs=313.2
Q ss_pred hhHHHHHHHHhhchHHHHHhcchHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCccc
Q 000755 910 APVIQHFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFHIAGAMEWLCFRLDMLSSLTFAFSLVLL-ISIPKGVIE 988 (1300)
Q Consensus 910 sp~~~~~~E~l~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~-~~~~~g~~~ 988 (1300)
.......-|++...++||+|+.|++-.++....+.++-+......+....+.+--..+.+...++..++. --+..|.++
T Consensus 211 n~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~~~gi~~~~mt 290 (591)
T KOG0057|consen 211 NSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIMVLGSNGIAAGKMT 290 (591)
T ss_pred hHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc
Confidence 3445667889999999999999999999888888877776666555555444444444333333222221 123455677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccCCCCCCCCCCceEEEEeeeeeeCCCC
Q 000755 989 PAIAGLAVTYGLNLNMLQAWVIWNLCNLENKIISVERILQYTCISSEPPLVIEESRPDCSWPTHGEVDILNLQVRYAPHL 1068 (1300)
Q Consensus 989 ~~~~gl~l~~~~~~~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~i~~~~v~~~y~~~~ 1068 (1300)
.+...+..+...++..++..+-..++++-..+.-.+-.....+.... +.+. +.+.-...+.|+|+||++.|+++
T Consensus 291 vgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~----i~~~-~~~i~~~~~~I~F~dV~f~y~~k- 364 (591)
T KOG0057|consen 291 VGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDED----IQEA-ALPIELFGGSIEFDDVHFSYGPK- 364 (591)
T ss_pred ccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhh----hhhc-cCCcccCCCcEEEEeeEEEeCCC-
Confidence 77777888888888888888888888877776665555443221111 1111 11112345779999999999986
Q ss_pred CcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEEEcCCCCCCcccHHH
Q 000755 1069 PLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRN 1148 (1300)
Q Consensus 1069 ~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~vpQ~~~lf~gTvr~ 1148 (1300)
+++|+|+||+|++||||||||+|||||||++++|+|+++ .+|+|+|||+|+.+++++.+|+-|||||||..||++||.+
T Consensus 365 ~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~ 443 (591)
T KOG0057|consen 365 RKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILY 443 (591)
T ss_pred CceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHH
Confidence 459999999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred hcCCCC-CCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHH
Q 000755 1149 NLDPLE-EYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATD 1227 (1300)
Q Consensus 1149 Nl~~~~-~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~~iLlLDEpTs~lD~~t~ 1227 (1300)
|+.+.+ ..+++|+.+++++.+++|.+.++|+|++|.|||+|..||||||||++||||++++|+|+++|||||+||.+||
T Consensus 444 NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE 523 (591)
T KOG0057|consen 444 NIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETE 523 (591)
T ss_pred HhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhH
Confidence 998764 6799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcEEEEEeCChhhhhccCEEEEEeCCEEEEecChhhHHhcCCChHHHHHHHHh
Q 000755 1228 NLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLVAEYT 1292 (1300)
Q Consensus 1228 ~~i~~~l~~~~~~~Tvi~iaHrl~~i~~~D~v~vl~~G~i~e~g~~~~l~~~~~~~f~~l~~~~~ 1292 (1300)
+.|.+.|.....++|+|+|+||++++++||+|+++++|++.|+|+|+||+. +++.|+++|....
T Consensus 524 ~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~-~s~~~~~~w~~~~ 587 (591)
T KOG0057|consen 524 REILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA-PSELYADLWTTQT 587 (591)
T ss_pred HHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhh-hhhHHHHHhcccc
Confidence 999999999888999999999999999999999999999999999999998 7888888876543
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-58 Score=578.12 Aligned_cols=397 Identities=23% Similarity=0.314 Sum_probs=337.5
Q ss_pred hhhhhHHHHHHHHHHhhhhhhHHHHHHHHhhchHHHHHhcchHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHH
Q 000755 891 EQYYIPSARELSRLVGVCKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFHIAGAMEWLCFRLDMLSSL 970 (1300)
Q Consensus 891 ~~~y~~~~r~l~rl~~~~~sp~~~~~~E~l~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~ 970 (1300)
..++.+..++..+......+...+++.|.++|+.+||+|+.++.+.+++.+..+...+..........+.....+++..+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (588)
T PRK13657 173 TTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAASTI 252 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666778899999999999999999999999998888888777666555444444444444433333
Q ss_pred HHHHHHHH-HHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccCCCCCCC
Q 000755 971 TFAFSLVL-LISIPKGVIEPAIAGLAVTYGLNLNMLQAWVIWNLCNLENKIISVERILQYTCISSEPPLVIEESRPDCSW 1049 (1300)
Q Consensus 971 ~~~~~~~~-~~~~~~g~~~~~~~gl~l~~~~~~~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~w 1049 (1300)
...+++++ ...+..|.+++|.+..++.|...+..++..+...+..+.....+.+|+.++.+.+++.+.. ... ++. -
T Consensus 253 ~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~-~~~-~~~-~ 329 (588)
T PRK13657 253 TMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDP-PGA-IDL-G 329 (588)
T ss_pred HHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC-CCC-CCc-C
Confidence 32222222 3345678999999999999999999999999999999999999999999987754432211 111 110 0
Q ss_pred CCCceEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHh
Q 000755 1050 PTHGEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLR 1129 (1300)
Q Consensus 1050 p~~g~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr 1129 (1300)
+..+.|+++||+|+|+++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||+|+++++.+++|
T Consensus 330 ~~~~~I~~~~vsf~y~~~-~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r 408 (588)
T PRK13657 330 RVKGAVEFDDVSFSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLR 408 (588)
T ss_pred CCCCeEEEEEEEEEeCCC-CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHH
Confidence 234679999999999754 4699999999999999999999999999999999999999999999999999999999999
Q ss_pred cccEEEcCCCCCCcccHHHhcCCC-CCCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHcc
Q 000755 1130 SRLSIIPQDPTMFEGTVRNNLDPL-EEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLK 1208 (1300)
Q Consensus 1130 ~~i~~vpQ~~~lf~gTvr~Nl~~~-~~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~ 1208 (1300)
++|+|+||||.+|+||+|||+... ++.+|++++++++.+++++++.++|+|+||.++++|.+||||||||++||||+++
T Consensus 409 ~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~ 488 (588)
T PRK13657 409 RNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLK 488 (588)
T ss_pred hheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999876 4678999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhccCEEEEEeCCEEEEecChhhHHhcCCChHHHHH
Q 000755 1209 KSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLV 1288 (1300)
Q Consensus 1209 ~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~~D~v~vl~~G~i~e~g~~~~l~~~~~~~f~~l~ 1288 (1300)
+|+|||||||||+||+++++.|.+.|++..+++|+|+||||++.+..||+|++|++|+++|.|+|++++++ ++.|++++
T Consensus 489 ~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~-~~~y~~l~ 567 (588)
T PRK13657 489 DPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVAR-GGRFAALL 567 (588)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHC-CChHHHHH
Confidence 99999999999999999999999999988788999999999999999999999999999999999999975 68999999
Q ss_pred HHHh
Q 000755 1289 AEYT 1292 (1300)
Q Consensus 1289 ~~~~ 1292 (1300)
.+..
T Consensus 568 ~~~~ 571 (588)
T PRK13657 568 RAQG 571 (588)
T ss_pred HHhh
Confidence 8654
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-58 Score=574.40 Aligned_cols=395 Identities=24% Similarity=0.338 Sum_probs=338.0
Q ss_pred hhHHHHHHHHHHhhhhhhHHHHHHHHhhchHHHHHhcchHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 894 YIPSARELSRLVGVCKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFHIAGAMEWLCFRLDMLSSLTFA 973 (1300)
Q Consensus 894 y~~~~r~l~rl~~~~~sp~~~~~~E~l~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~ 973 (1300)
+.+..+...+..........+++.|.++|+.+||+|+.++.+.+++.+..+...+..........|+......+..+...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (576)
T TIGR02204 178 FGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIV 257 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555566666778889999999999999999999999999988888877666555555555555444443333222
Q ss_pred HHHHH-HHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccCCCCCCCCCC
Q 000755 974 FSLVL-LISIPKGVIEPAIAGLAVTYGLNLNMLQAWVIWNLCNLENKIISVERILQYTCISSEPPLVIEESRPDCSWPTH 1052 (1300)
Q Consensus 974 ~~~~~-~~~~~~g~~~~~~~gl~l~~~~~~~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~ 1052 (1300)
+.+++ ...+..|.++.|.+..+..|...+..++..+...+.++.+...+.+|+.++.+.++|.+.. .......+|..
T Consensus 258 ~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~--~~~~~~~~~~~ 335 (576)
T TIGR02204 258 GVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAP--AHPKTLPVPLR 335 (576)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCC--CCCccCCcCCC
Confidence 22222 2334578899999999999999999999999999999999999999999998866542211 11111123445
Q ss_pred ceEEEEeeeeeeCCCC-CcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcc
Q 000755 1053 GEVDILNLQVRYAPHL-PLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSR 1131 (1300)
Q Consensus 1053 g~i~~~~v~~~y~~~~-~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~ 1131 (1300)
+.|+++||+++|+++. +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.|+++++.+++|++
T Consensus 336 ~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 415 (576)
T TIGR02204 336 GEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRAR 415 (576)
T ss_pred ceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHh
Confidence 6899999999997532 579999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEcCCCCCCcccHHHhcCCC-CCCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCC
Q 000755 1132 LSIIPQDPTMFEGTVRNNLDPL-EEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKS 1210 (1300)
Q Consensus 1132 i~~vpQ~~~lf~gTvr~Nl~~~-~~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~ 1210 (1300)
++|+||||.+|++|+|||+.+. ++.+|++++++++++++.++++++|+|+||.++|+|.+||||||||++||||++++|
T Consensus 416 i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~ 495 (576)
T TIGR02204 416 MALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDA 495 (576)
T ss_pred ceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999875 357899999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhccCEEEEEeCCEEEEecChhhHHhcCCChHHHHHHH
Q 000755 1211 KVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLVAE 1290 (1300)
Q Consensus 1211 ~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~~D~v~vl~~G~i~e~g~~~~l~~~~~~~f~~l~~~ 1290 (1300)
+|||||||||+||+++++.+.+.|++..+++|+|+||||++.+..||+|++|++|++++.|+|+++++ +++.|++|++.
T Consensus 496 ~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~-~~~~~~~l~~~ 574 (576)
T TIGR02204 496 PILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIA-KGGLYARLARL 574 (576)
T ss_pred CeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHH-cCChHHHHHhh
Confidence 99999999999999999999999999888999999999999999999999999999999999999987 47899998865
Q ss_pred H
Q 000755 1291 Y 1291 (1300)
Q Consensus 1291 ~ 1291 (1300)
+
T Consensus 575 ~ 575 (576)
T TIGR02204 575 Q 575 (576)
T ss_pred c
Confidence 4
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-56 Score=553.06 Aligned_cols=508 Identities=16% Similarity=0.160 Sum_probs=361.7
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 290 LTKALFFSAWKEIVFTAILALLYTLANYVG-PYLIDTFVQYLNGEREFKNEGYVLVSTFFVAKIVECLAQRHWMFRLQVA 368 (1300)
Q Consensus 290 l~~~l~~~~~~~~~~~~l~~l~~~~~~~~~-P~ll~~li~~l~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~ 368 (1300)
+++.+++.+++.++...++.++..++.++. |++.+.++|.+... ....+.+++.+++.. +......+...++
T Consensus 3 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 75 (547)
T PRK10522 3 LLRLVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETADTS---LLVLPEFLGLLLLLM----AVTLGSQLALTTL 75 (547)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc---chHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 567778888888888888989888888774 77888888865321 111111111111111 2223344556677
Q ss_pred HHHHHHHHHHHHHHHHhcCCchhhcCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 369 GIKMRSVLVSMVYNKGLTLSCQAKQSYTSGEIINFMTVDAERIGDFGWYMHDPWLVILQVSLALLILYKNLGLASIAALF 448 (1300)
Q Consensus 369 g~~ir~~L~~~Iy~K~L~ls~~~~~~~~~G~Ivnl~s~Dv~~i~~~~~~~~~~~~~~l~i~~~l~lL~~~lg~~~l~~l~ 448 (1300)
+.++...++..+|+|.++++...++++++|+++|++++|++.+..++..+..++...+.+++++++++..-+..+++.++
T Consensus 76 ~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~~l~~~~~~~~~~i~~~~~l~~~~~~l~li~l~ 155 (547)
T PRK10522 76 GHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFVRLPELVQGIILTLGSAAYLAWLSPKMLLVTAI 155 (547)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 78888889999999999999999999999999999999999998865555566666666666655554333333344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 449 ATVLIMLTNFPLGRLQENFQDKLMGSKDKRMKVTSEILRNMRILKLQG--WEMKFLSKIIELRKIEAGWLKKFLYTGAMT 526 (1300)
Q Consensus 449 ~~~l~~~~~~~~~k~~~~~~~~~~~~~d~r~~~~~E~L~~ir~IK~~~--~E~~f~~~i~~~R~~E~~~l~~~~~~~~~~ 526 (1300)
++++.+++...+.++.++..++.++..+++.+.+.|.++|++++++.. .++.+.+++.+..+.-.+...+........
T Consensus 156 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (547)
T PRK10522 156 WMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELTLNRERAEYVFENEYEPDAQEYRHHIIRADTFHLSA 235 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhccHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHH
Confidence 455555566667777888888889999999999999999999997432 223444444432221111111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC---cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Q 000755 527 SFVFWGAPTFVSVATFGACMLLGIP---LESGKILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIASFLCLDDLQSD 603 (1300)
Q Consensus 527 ~~~~~~~p~~v~~~~f~~~~~~~~~---Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~ 603 (1300)
.. +. .++..+.++.+++.++. .+.+.+..+..+...+..|+..+...+..+.+++.+++|+.+++..++.++.
T Consensus 236 ~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~ 311 (547)
T PRK10522 236 VN--WS--NIMMLGAIGLVFYMANSLGWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEF 311 (547)
T ss_pred HH--HH--HHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 11 10 11111122222222211 2222222222233346689999999999999999999999999765432211
Q ss_pred cccCCCCCCCcceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe--
Q 000755 604 VVEKHPRGSSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-- 681 (1300)
Q Consensus 604 ~~~~~~~~~~~~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-- 681 (1300)
. ...+. .....++++|++|+|+. ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 312 ~-~~~~~-~~~~~i~~~~v~f~y~~--~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~ 387 (547)
T PRK10522 312 P-RPQAF-PDWQTLELRNVTFAYQD--NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPV 387 (547)
T ss_pred c-ccccc-CcCceEEEEEEEEEeCC--CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEC
Confidence 1 11111 11246999999999973 357999999999999999999999999999999999999999999999873
Q ss_pred -----------EEEEecCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHH
Q 000755 682 -----------KAYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRI 750 (1300)
Q Consensus 682 -----------~ayv~Q~~~l~~~Ti~eNI~fg~~~~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRi 750 (1300)
++||+|+|++|++|++|| +...++++.+++++.+++..+++. ++|. .+|.+||||||||+
T Consensus 388 ~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~~-~~~~-----~~G~~LSgGq~qRl 458 (547)
T PRK10522 388 TAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKLEL-EDGR-----ISNLKLSKGQKKRL 458 (547)
T ss_pred CCCCHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhhhc-cccC-----CCCCCCCHHHHHHH
Confidence 699999999999999999 455677788888888877766642 3221 24899999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCCCccccCCEEEEEeCCeEEEe
Q 000755 751 QIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-RSKTVIYVTHQVEFLPAADLILVMKDGKITQA 821 (1300)
Q Consensus 751 aLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l-~~~TvIlvtH~~~~l~~~d~i~~l~~G~i~~~ 821 (1300)
+||||++++|+++|||||||+||+++++.+.+.+..... +++|+|+||||++.+..||+|++|++|++++.
T Consensus 459 ~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 459 ALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999988765433222 48999999999999999999999999999976
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-59 Score=524.52 Aligned_cols=384 Identities=25% Similarity=0.419 Sum_probs=343.8
Q ss_pred HHHHHhhhhhhHHHHHHHHhhchHHHHHhcchHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 000755 901 LSRLVGVCKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFHIAGAMEWLCFRLDMLSSLTFAFSLVL-L 979 (1300)
Q Consensus 901 l~rl~~~~~sp~~~~~~E~l~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~-~ 979 (1300)
.+|.-..+-+...+.-.+++-..+|+|.|+.|+.+..++.+..+.+.++.........|+++--..+........... .
T Consensus 110 ~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~ 189 (497)
T COG5265 110 FRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLVLNFGQTAIFSTGLRVMMTMSA 189 (497)
T ss_pred HHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcH
Confidence 344444455666677788999999999999999999999999999999998888888888876665554433332222 2
Q ss_pred HHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccCCCCCCCC-CCceEEEE
Q 000755 980 ISIPKGVIEPAIAGLAVTYGLNLNMLQAWVIWNLCNLENKIISVERILQYTCISSEPPLVIEESRPDCSWP-THGEVDIL 1058 (1300)
Q Consensus 980 ~~~~~g~~~~~~~gl~l~~~~~~~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp-~~g~i~~~ 1058 (1300)
..+..|.++.|...+.-.|..+++.+++.+...+.++.+.....|++.+..+.+.|.. +....++-|| ..|.+.|+
T Consensus 190 ~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~---d~pda~~L~~~~~g~v~F~ 266 (497)
T COG5265 190 LGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVS---DAPDAPPLWPVRLGAVAFI 266 (497)
T ss_pred HHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhc---cCCCCccccccccceEEEE
Confidence 3456788999999999999999999999999999999999999999999988766543 2233445564 46889999
Q ss_pred eeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEEEcCC
Q 000755 1059 NLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQD 1138 (1300)
Q Consensus 1059 ~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~vpQ~ 1138 (1300)
||+|.|.+.. ++|+|+||++++|+++||||++|+||||++++|+|+|++++|.|.+||+|+..+..+.+|+.||+||||
T Consensus 267 ~V~F~y~~~r-~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQD 345 (497)
T COG5265 267 NVSFAYDPRR-PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQD 345 (497)
T ss_pred EEEeeccccc-hhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCccc
Confidence 9999998874 699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccHHHhcCCC-CCCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEeC
Q 000755 1139 PTMFEGTVRNNLDPL-EEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDE 1217 (1300)
Q Consensus 1139 ~~lf~gTvr~Nl~~~-~~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~~iLlLDE 1217 (1300)
..||+.|+..|+.+. ...+++|++.+++.++++++++.+|+|+||.|||.|-.||||||||+++||++|++|+||+|||
T Consensus 346 tvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~de 425 (497)
T COG5265 346 TVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDE 425 (497)
T ss_pred ceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEeh
Confidence 999999999999876 4689999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhccCEEEEEeCCEEEEecChhhHHhcCCChHHHHHH
Q 000755 1218 ATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLVA 1289 (1300)
Q Consensus 1218 pTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~~D~v~vl~~G~i~e~g~~~~l~~~~~~~f~~l~~ 1289 (1300)
+||+||..|++.||..|++..+++|.++||||++|+.++|.|+||++|+|+|.|+|++|+.. +|.|++||.
T Consensus 426 atsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll~~-~g~ya~mw~ 496 (497)
T COG5265 426 ATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAA-GGLYAEMWR 496 (497)
T ss_pred hhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHHHc-CChHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999986 899999985
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-57 Score=566.32 Aligned_cols=389 Identities=23% Similarity=0.282 Sum_probs=330.1
Q ss_pred HHHHHHHhhhhhhHHHHHHHHhhchHHHHHhcchHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 899 RELSRLVGVCKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFHIAGAMEWLCFRLDMLSSLTFAFSLVL 978 (1300)
Q Consensus 899 r~l~rl~~~~~sp~~~~~~E~l~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~ 978 (1300)
++..+......+.+.+.+.|+++|+.+||+|+.++++.+++.+..+...+..........+..........+...+.+++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 241 (569)
T PRK10789 162 HERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGG 241 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444556778899999999999999999999999998888777666555544444333333333222222222122
Q ss_pred -HHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccCCCCCCCCCCceEEE
Q 000755 979 -LISIPKGVIEPAIAGLAVTYGLNLNMLQAWVIWNLCNLENKIISVERILQYTCISSEPPLVIEESRPDCSWPTHGEVDI 1057 (1300)
Q Consensus 979 -~~~~~~g~~~~~~~gl~l~~~~~~~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~i~~ 1057 (1300)
...+..|.++.|.+..+..|...+..++..+...+..++....+.+|+.++.+.+++.+. ...+.+ +..+.|++
T Consensus 242 g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~---~~~~~~--~~~~~I~~ 316 (569)
T PRK10789 242 GSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKD---GSEPVP--EGRGELDV 316 (569)
T ss_pred HHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccC---CCCCCC--CCCCcEEE
Confidence 233457889999999999999999999999999999999999999999999876544321 111111 23467999
Q ss_pred EeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEEEcC
Q 000755 1058 LNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQ 1137 (1300)
Q Consensus 1058 ~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~vpQ 1137 (1300)
+|++++|+++.+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+|+.+++..++|++++|+||
T Consensus 317 ~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q 396 (569)
T PRK10789 317 NIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQ 396 (569)
T ss_pred EEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEcc
Confidence 99999998655579999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccHHHhcCCC-CCCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 000755 1138 DPTMFEGTVRNNLDPL-EEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLD 1216 (1300)
Q Consensus 1138 ~~~lf~gTvr~Nl~~~-~~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~~iLlLD 1216 (1300)
+|.+|++|+|+|+.+. .+.++++++++++.+++++++.++|+|+||.++++|.+||||||||++||||++++|+|||||
T Consensus 397 ~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlD 476 (569)
T PRK10789 397 TPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILD 476 (569)
T ss_pred CCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 9999999999999875 467899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhccCEEEEEeCCEEEEecChhhHHhcCCChHHHHHHHHhh
Q 000755 1217 EATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLVAEYTQ 1293 (1300)
Q Consensus 1217 EpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~~D~v~vl~~G~i~e~g~~~~l~~~~~~~f~~l~~~~~~ 1293 (1300)
|||++||+++++.+.+.|++..+++|+|+||||++++..||+|++|++|++++.|++++++++ ++.|+++++....
T Consensus 477 Epts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~~~~ 552 (569)
T PRK10789 477 DALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQ-SGWYRDMYRYQQL 552 (569)
T ss_pred CccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHc-CChHHHHHHHhhh
Confidence 999999999999999999988788999999999999999999999999999999999999975 6889999986543
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-58 Score=566.55 Aligned_cols=350 Identities=26% Similarity=0.346 Sum_probs=297.6
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhhchHHHHHhcchHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 898 ARELSRLVGVCKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFHIAGAMEWLCFRLDMLSSLTFAFSLV 977 (1300)
Q Consensus 898 ~r~l~rl~~~~~sp~~~~~~E~l~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~ 977 (1300)
.+...+......+...+++.|.++|+++||+|+.++.+.+++.+..+...+..........+......++..+...++++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (529)
T TIGR02868 178 ARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAAQLLAAGLAVLGALW 257 (529)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444556788999999999999999999999999999988887777666555544444444444443333333222
Q ss_pred H-HHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccCCCCCCCCCCceEE
Q 000755 978 L-LISIPKGVIEPAIAGLAVTYGLNLNMLQAWVIWNLCNLENKIISVERILQYTCISSEPPLVIEESRPDCSWPTHGEVD 1056 (1300)
Q Consensus 978 ~-~~~~~~g~~~~~~~gl~l~~~~~~~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~i~ 1056 (1300)
+ ...+..|.++.|.+..++.|...+..++..+...+..+.+...+.+|+.++++.++|.+.. +...+...+|..+.|+
T Consensus 258 ~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~-~~~~~~~~~~~~~~I~ 336 (529)
T TIGR02868 258 AGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEG-VVPAAGALGLGKPTLE 336 (529)
T ss_pred HHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCC-CCCCCcccCCCCceEE
Confidence 2 2334578899999999999999999999999999999999999999999999876553211 1111111234557899
Q ss_pred EEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEEEc
Q 000755 1057 ILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIP 1136 (1300)
Q Consensus 1057 ~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~vp 1136 (1300)
++||+|+|+++. ++|+|+||+|++||++|||||||||||||+++|+|+++|++|+|.+||+|++++ .+++|++++|||
T Consensus 337 ~~~vsf~Y~~~~-~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V~ 414 (529)
T TIGR02868 337 LRDLSFGYPGSP-PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELRRRISVFA 414 (529)
T ss_pred EEEEEEecCCCC-ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHHhheEEEc
Confidence 999999997643 599999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred CCCCCCcccHHHhcCCC-CCCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEE
Q 000755 1137 QDPTMFEGTVRNNLDPL-EEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVL 1215 (1300)
Q Consensus 1137 Q~~~lf~gTvr~Nl~~~-~~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~~iLlL 1215 (1300)
|||.+|++|||||+.+. ++.+|++++++++.+++++++.++|+||||.+||+|.+||||||||+|||||++++|+||||
T Consensus 415 Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliL 494 (529)
T TIGR02868 415 QDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLL 494 (529)
T ss_pred cCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999875 46799999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCCh
Q 000755 1216 DEATASVDTATDNLIQQTLRQHFSDCTVITIAHRI 1250 (1300)
Q Consensus 1216 DEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl 1250 (1300)
|||||+||++|++.|++.+++..+++|+|+||||+
T Consensus 495 DE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 495 DEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred eCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 99999999999999999999988899999999995
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-56 Score=561.16 Aligned_cols=397 Identities=23% Similarity=0.328 Sum_probs=332.6
Q ss_pred hhhhHHHHHHHHHHhhhhhhHHHHHHHHhhchHHHHHhcchHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHH
Q 000755 892 QYYIPSARELSRLVGVCKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFHIAGAMEWLCFRLDMLSSLT 971 (1300)
Q Consensus 892 ~~y~~~~r~l~rl~~~~~sp~~~~~~E~l~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~ 971 (1300)
.++.+..++..+......+...+++.|+++|+.+||+|+.++.+.+++.+..+...+..........+......++..+.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (585)
T TIGR01192 174 KLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNRMASTIS 253 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555667778899999999999999999999998888888777665554443333333322222333222
Q ss_pred HHHHHHH-HHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccCCCCCCCC
Q 000755 972 FAFSLVL-LISIPKGVIEPAIAGLAVTYGLNLNMLQAWVIWNLCNLENKIISVERILQYTCISSEPPLVIEESRPDCSWP 1050 (1300)
Q Consensus 972 ~~~~~~~-~~~~~~g~~~~~~~gl~l~~~~~~~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp 1050 (1300)
..+++++ ...+..|.++.|.+..++.|...+..++..+...+.++.....+.+|+.+..+.+++... ...+ ..++
T Consensus 254 ~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~---~~~~-~~~~ 329 (585)
T TIGR01192 254 MMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREE---PADA-PELP 329 (585)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC---CccC-CCCC
Confidence 2222222 233557889999999999999999999999999999999999999999998876543211 1111 1122
Q ss_pred -CCceEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHh
Q 000755 1051 -THGEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLR 1129 (1300)
Q Consensus 1051 -~~g~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr 1129 (1300)
..+.|+++||+++|+++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+|+.+++.+.+|
T Consensus 330 ~~~~~i~~~~v~~~y~~~-~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~ 408 (585)
T TIGR01192 330 NVKGAVEFRHITFEFANS-SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLR 408 (585)
T ss_pred CCCCeEEEEEEEEECCCC-CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHH
Confidence 34679999999999754 3589999999999999999999999999999999999999999999999999999999999
Q ss_pred cccEEEcCCCCCCcccHHHhcCCC-CCCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHcc
Q 000755 1130 SRLSIIPQDPTMFEGTVRNNLDPL-EEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLK 1208 (1300)
Q Consensus 1130 ~~i~~vpQ~~~lf~gTvr~Nl~~~-~~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~ 1208 (1300)
+.++|+||||.+|++|++||+.+. .+.++++++++++.+++++++.++|+|+||.++++|.+||||||||++|||||++
T Consensus 409 ~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~ 488 (585)
T TIGR01192 409 KSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILK 488 (585)
T ss_pred hheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999875 4578999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhccCEEEEEeCCEEEEecChhhHHhcCCChHHHHH
Q 000755 1209 KSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLV 1288 (1300)
Q Consensus 1209 ~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~~D~v~vl~~G~i~e~g~~~~l~~~~~~~f~~l~ 1288 (1300)
+|+|||||||||+||+++++.+.+.|++..+++|+|+||||++++..||+|++|++|++++.|++++++++ ++.|++++
T Consensus 489 ~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~y~~l~ 567 (585)
T TIGR01192 489 NAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQK-DGRFYKLL 567 (585)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHC-CChHHHHH
Confidence 99999999999999999999999999988788999999999999999999999999999999999999975 68999999
Q ss_pred HHHhhh
Q 000755 1289 AEYTQR 1294 (1300)
Q Consensus 1289 ~~~~~~ 1294 (1300)
+.+...
T Consensus 568 ~~~~~~ 573 (585)
T TIGR01192 568 RRSGLL 573 (585)
T ss_pred HhCccc
Confidence 877543
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-56 Score=592.85 Aligned_cols=211 Identities=22% Similarity=0.277 Sum_probs=176.3
Q ss_pred eEEEEeeeeeeCC-----------CCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCC--CcceEEECCeec
Q 000755 1054 EVDILNLQVRYAP-----------HLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEP--TAGEIVIDGINI 1120 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~-----------~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p--~~G~I~idg~di 1120 (1300)
.+.++||++..+. +...+|+|||+++++||.+||+||||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 5899999988742 123699999999999999999999999999999999999873 789999999876
Q ss_pred CCCCHHHHhcccEEEcCCCCCCcc-cHHHhcCCC------CCCCHH----HHHHHHHHcCCcHHHHhhcCCCccccccCC
Q 000755 1121 SSIGLHDLRSRLSIIPQDPTMFEG-TVRNNLDPL------EEYKDE----EIWEALDKCQLGDEVRNKEGKLDSRVTENG 1189 (1300)
Q Consensus 1121 ~~i~~~~lr~~i~~vpQ~~~lf~g-Tvr~Nl~~~------~~~~d~----~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G 1189 (1300)
. ....|+.++|++|++.+++. ||+|||.+. ...+++ .+.++++.++|.+. .|+.+|..+
T Consensus 947 ~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~-------~~~~vg~~~ 1016 (1470)
T PLN03140 947 K---QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNL-------KDAIVGLPG 1016 (1470)
T ss_pred C---hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhH-------hCCccCCCC
Confidence 4 24567789999999887765 999998631 122322 36678888888653 355666444
Q ss_pred -CCCChhHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhh-hh-ccCEEEEEeC-
Q 000755 1190 -ENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITS-VI-DSDMVLLLSH- 1264 (1300)
Q Consensus 1190 -~~LSgGqrQrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~-i~-~~D~v~vl~~- 1264 (1300)
..||||||||++|||+|+.+|+||+|||||+|||+.+...+.+.|++.. .++|||+++|+++. +. .||++++|++
T Consensus 1017 ~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~g 1096 (1470)
T PLN03140 1017 VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1096 (1470)
T ss_pred CCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCC
Confidence 6899999999999999999999999999999999999999999999865 47899999999984 44 4999999996
Q ss_pred CEEEEecChh
Q 000755 1265 GIIEEYDSPT 1274 (1300)
Q Consensus 1265 G~i~e~g~~~ 1274 (1300)
|+++.+|++.
T Consensus 1097 G~~v~~G~~~ 1106 (1470)
T PLN03140 1097 GQVIYSGPLG 1106 (1470)
T ss_pred CEEEEECCcc
Confidence 8999999864
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-56 Score=557.00 Aligned_cols=374 Identities=19% Similarity=0.237 Sum_probs=318.7
Q ss_pred HHHHHHHhhhhhhHHHHHHHHhhchHHHHHhcchHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 899 RELSRLVGVCKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFHIAGAMEWLCFRLDMLSSLTFAFSLVL 978 (1300)
Q Consensus 899 r~l~rl~~~~~sp~~~~~~E~l~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~ 978 (1300)
+...+......+...+++.|+++|+++||+|+.++.+.+++.+..++..+..................+..+...++.++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (544)
T TIGR01842 166 KKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLGL 245 (544)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445566778899999999999999999999999998888777665554443333333333333322222222222
Q ss_pred -HHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccCCCCCCCCCCceEEE
Q 000755 979 -LISIPKGVIEPAIAGLAVTYGLNLNMLQAWVIWNLCNLENKIISVERILQYTCISSEPPLVIEESRPDCSWPTHGEVDI 1057 (1300)
Q Consensus 979 -~~~~~~g~~~~~~~gl~l~~~~~~~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~i~~ 1057 (1300)
......|.+++|.+..++.|...+..++..+...+.+++....+.+|+.++++.+++... ....+ +..+.|++
T Consensus 246 g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~---~~~~~---~~~~~i~~ 319 (544)
T TIGR01842 246 GAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDP---AMPLP---EPEGHLSV 319 (544)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccC---CCCCC---CCCCeEEE
Confidence 234557889999999999999999999999999999999999999999999976655321 11111 23467999
Q ss_pred EeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEEEcC
Q 000755 1058 LNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQ 1137 (1300)
Q Consensus 1058 ~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~vpQ 1137 (1300)
+|++++|+++.+++|+|+||++++||++||+|+||||||||+++|+|+++|++|+|.+||+|+.+++.+.+|++++|+||
T Consensus 320 ~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q 399 (544)
T TIGR01842 320 ENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQ 399 (544)
T ss_pred EEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecC
Confidence 99999997655579999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccHHHhcCCCC-CCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 000755 1138 DPTMFEGTVRNNLDPLE-EYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLD 1216 (1300)
Q Consensus 1138 ~~~lf~gTvr~Nl~~~~-~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~~iLlLD 1216 (1300)
+|.+|++|++||+.... +.++++++++++.++++++++++|+|+||.++++|.+||||||||++||||++++|++||||
T Consensus 400 ~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililD 479 (544)
T TIGR01842 400 DVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLD 479 (544)
T ss_pred CcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999999998554 47899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhccCEEEEEeCCEEEEecChhhHHh
Q 000755 1217 EATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLE 1278 (1300)
Q Consensus 1217 EpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~~D~v~vl~~G~i~e~g~~~~l~~ 1278 (1300)
|||++||+++++.+.+.|++.. +++|+|+||||++++..||+|++|++|++++.|+|+++++
T Consensus 480 Epts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 480 EPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred CCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 9999999999999999999875 5799999999999988899999999999999999999975
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-57 Score=517.01 Aligned_cols=444 Identities=23% Similarity=0.365 Sum_probs=344.4
Q ss_pred ceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe-------------
Q 000755 615 TAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------- 681 (1300)
Q Consensus 615 ~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~------------- 681 (1300)
..+++++++..|+ ...+++||||+|++||++|++|+||+|||||+++|.|.|+|++|+|.++|+
T Consensus 3 ~~l~~~~itK~f~---~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~ 79 (501)
T COG3845 3 PALEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRL 79 (501)
T ss_pred ceEEEeccEEEcC---CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHc
Confidence 4689999999997 356899999999999999999999999999999999999999999999995
Q ss_pred -EEEEecCCcCC-CCCHHHHHhcCCCC------CH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHH
Q 000755 682 -KAYVAQSPWIQ-SGNIEDNILFGKPM------DR----EKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQR 749 (1300)
Q Consensus 682 -~ayv~Q~~~l~-~~Ti~eNI~fg~~~------~~----~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqR 749 (1300)
||+|+|++-++ +-|+.|||..|.+- +. ++.++..+..++.-| ..+....||-|||||
T Consensus 80 GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vd-----------p~~~V~dLsVG~qQR 148 (501)
T COG3845 80 GIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVD-----------PDAKVADLSVGEQQR 148 (501)
T ss_pred CCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCC-----------ccceeecCCcchhHH
Confidence 59999999986 56999999999863 22 344444444444433 345667899999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHHH
Q 000755 750 IQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDIL 828 (1300)
Q Consensus 750 iaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 828 (1300)
|.|-+|||++|+++|||||||.|-|...+++|+-+-.-...|+|||+|||+++.+.. ||++-||+.|+++.. ++...
T Consensus 149 VEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt--~~~~~ 226 (501)
T COG3845 149 VEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGT--VDPVA 226 (501)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEee--ecCCC
Confidence 999999999999999999999999999999997543334569999999999998776 999999999998643 22100
Q ss_pred hcCchHHHHHHHHHHHhhhhcccCCCCccccccccccCCCccccccccccCccccccccchhhhhhhHHHHHHHHHHhhh
Q 000755 829 NSGTDFMVLVGAHQQALSALDSIEGGPVSERISMNKENGGMDTTNGVTMKEGNEDIQTDKVDEQYYIPSARELSRLVGVC 908 (1300)
Q Consensus 829 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~~lp~grnr~s~D~v~~~~y~~~~r~l~rl~~~~ 908 (1300)
+. +..++.++
T Consensus 227 ~~------------------------------------------------------------------t~~ela~l---- 236 (501)
T COG3845 227 ET------------------------------------------------------------------TEEELAEL---- 236 (501)
T ss_pred CC------------------------------------------------------------------CHHHHHHH----
Confidence 00 00011100
Q ss_pred hhhHHHHHHHHhhchHHHHHhcchHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Q 000755 909 KAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFHIAGAMEWLCFRLDMLSSLTFAFSLVLLISIPKGVIE 988 (1300)
Q Consensus 909 ~sp~~~~~~E~l~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~~~~~~g~~~ 988 (1300)
..|.
T Consensus 237 --------------------------------------------------------------------------MvG~-- 240 (501)
T COG3845 237 --------------------------------------------------------------------------MVGR-- 240 (501)
T ss_pred --------------------------------------------------------------------------hcCC--
Confidence 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccCCCCCCCCCCceEEEEeeeeeeCCCC
Q 000755 989 PAIAGLAVTYGLNLNMLQAWVIWNLCNLENKIISVERILQYTCISSEPPLVIEESRPDCSWPTHGEVDILNLQVRYAPHL 1068 (1300)
Q Consensus 989 ~~~~gl~l~~~~~~~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~i~~~~v~~~y~~~~ 1068 (1300)
+.....+ . ++.-|....++++|+++.-+..
T Consensus 241 ----------------------------------------------~v~~~~~--~-~~~~pg~~vL~V~~L~v~~~~~- 270 (501)
T COG3845 241 ----------------------------------------------EVVLRVV--K-PPSTPGEVVLEVEDLSVKDRRG- 270 (501)
T ss_pred ----------------------------------------------ccccccc--c-CCCCCCCeEEEEeeeEeecCCC-
Confidence 0000000 0 1112445579999999976543
Q ss_pred CcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeec-CCCCHHHHhc-ccEEEcCCCC----CC
Q 000755 1069 PLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINI-SSIGLHDLRS-RLSIIPQDPT----MF 1142 (1300)
Q Consensus 1069 ~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di-~~i~~~~lr~-~i~~vpQ~~~----lf 1142 (1300)
-..+++|||++++||++||.|-.|.|-+.|+.+|+|+.+|.+|+|.++|.|+ ...+..+.|. .++|||.|.. ..
T Consensus 271 ~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~ 350 (501)
T COG3845 271 VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVL 350 (501)
T ss_pred CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCccCChhhccCcccc
Confidence 3579999999999999999999999999999999999999999999999997 6667777665 6999999984 45
Q ss_pred cccHHHhcCCCCC----------CCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCE
Q 000755 1143 EGTVRNNLDPLEE----------YKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKV 1212 (1300)
Q Consensus 1143 ~gTvr~Nl~~~~~----------~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~~i 1212 (1300)
+.|+.+|+-+... ....++.+..++. ++++ .-.+.+.+++ ..+||||++||+-+||-|.++|++
T Consensus 351 ~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~l-i~~f-dVr~~~~~~~----a~~LSGGNqQK~IlaREl~~~p~l 424 (501)
T COG3845 351 DLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFAREL-IEEF-DVRAPSPDAP----ARSLSGGNQQKLILARELARRPDL 424 (501)
T ss_pred CccHHHHhhhhhccccccccccccCHHHHHHHHHHH-HHHc-CccCCCCCcc----hhhcCCcceehhhhhhhhccCCCE
Confidence 6699999853221 1112232221111 0000 0012333333 468999999999999999999999
Q ss_pred EEEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhH
Q 000755 1213 LVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKL 1276 (1300)
Q Consensus 1213 LlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l 1276 (1300)
||..+||.|||..+.+.|.+.|.+.. +++.|++||-+++++.. ||||.||.+|+++...+|++.
T Consensus 425 LI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~~~~ 490 (501)
T COG3845 425 LIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPEEA 490 (501)
T ss_pred EEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceecccccccC
Confidence 99999999999999999999998865 58999999999999988 999999999999988877763
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-56 Score=549.68 Aligned_cols=358 Identities=22% Similarity=0.349 Sum_probs=306.0
Q ss_pred HHHHHHhhhhhhHHHHHHHHhhchHHHHHhcchHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 000755 900 ELSRLVGVCKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFHIAGAMEWLCFRLDMLSSLTFAFSL-VL 978 (1300)
Q Consensus 900 ~l~rl~~~~~sp~~~~~~E~l~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~-~~ 978 (1300)
...+......+...+++.|+++|+.+||+|+.|+++.+++.+..++..+..........+......++..+...+.. +.
T Consensus 170 ~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (529)
T TIGR02857 170 AAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSVALVAVYI 249 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445556788999999999999999999999999998888777666655555555555555554444333222 22
Q ss_pred HHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccCCCCCCCCCCceEEEE
Q 000755 979 LISIPKGVIEPAIAGLAVTYGLNLNMLQAWVIWNLCNLENKIISVERILQYTCISSEPPLVIEESRPDCSWPTHGEVDIL 1058 (1300)
Q Consensus 979 ~~~~~~g~~~~~~~gl~l~~~~~~~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~i~~~ 1058 (1300)
......|.++.|.+..++.|...+..++..+...+..+.....+.+|+.++++.+++... . .+...+..+.|+++
T Consensus 250 ~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~----~-~~~~~~~~~~i~~~ 324 (529)
T TIGR02857 250 GFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAG----K-APVTAAPAPSLEFS 324 (529)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC----C-cCCCCCCCCeEEEE
Confidence 223347889999888888898889899999999999999999999999999875433211 1 11112234689999
Q ss_pred eeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEEEcCC
Q 000755 1059 NLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQD 1138 (1300)
Q Consensus 1059 ~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~vpQ~ 1138 (1300)
||+|+|+++.+++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+|+++++.+++|++++|||||
T Consensus 325 ~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~ 404 (529)
T TIGR02857 325 GLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQH 404 (529)
T ss_pred EEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCC
Confidence 99999986555799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccHHHhcCCC-CCCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEeC
Q 000755 1139 PTMFEGTVRNNLDPL-EEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDE 1217 (1300)
Q Consensus 1139 ~~lf~gTvr~Nl~~~-~~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~~iLlLDE 1217 (1300)
|.+|++|+|||+... ...+|++++++++.++++++++++|+||||.++|+|.+||||||||++||||++++|+|+||||
T Consensus 405 ~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE 484 (529)
T TIGR02857 405 PFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDE 484 (529)
T ss_pred CcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 999999999999875 4578999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhccCEEEEE
Q 000755 1218 ATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLL 1262 (1300)
Q Consensus 1218 pTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~~D~v~vl 1262 (1300)
|||+||+++++.|++.|++..+++|+|+||||++++..||+|++|
T Consensus 485 ~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 485 PTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred cccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 999999999999999999987899999999999999999999986
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-55 Score=490.95 Aligned_cols=463 Identities=22% Similarity=0.307 Sum_probs=365.1
Q ss_pred HHHHHHHHHHHHHHhcCCchhhcCCCHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 371 KMRSVLVSMVYNKGLTLSCQAKQSYTSGEIINFMTVDAERIGDFGWYM-HDPWLVILQVSLALLILYKNLGLASIAALFA 449 (1300)
Q Consensus 371 ~ir~~L~~~Iy~K~L~ls~~~~~~~~~G~Ivnl~s~Dv~~i~~~~~~~-~~~~~~~l~i~~~l~lL~~~lg~~~l~~l~~ 449 (1300)
.....+.-..|.+.+.|+.....+..+|.+---+..-..-|+.+.+++ ..+....+++++..+++++..|+......++
T Consensus 12 ~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~~f~~~t~v 91 (497)
T COG5265 12 IAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGWWFALTTLV 91 (497)
T ss_pred HHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccHHHHHHHH
Confidence 334455667799999999988888888887766666666677766543 3445566788888888888888665444444
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 000755 450 TVLIM-LTNFPLGRLQENFQDKLMGSKDKRMKVTSEILRNMRILKLQGWEMKFLSKIIELRK----IEAGWLKKFLYTGA 524 (1300)
Q Consensus 450 ~~l~~-~~~~~~~k~~~~~~~~~~~~~d~r~~~~~E~L~~ir~IK~~~~E~~f~~~i~~~R~----~E~~~l~~~~~~~~ 524 (1300)
++++. .+..........+.++..++-.+-...-.+.|-|..++|.|+-|+.+..+..+..+ .+.+.......+..
T Consensus 92 tv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~~Sl~~Ln~ 171 (497)
T COG5265 92 TVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLVLNF 171 (497)
T ss_pred HHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHHHHHHHHHH
Confidence 44333 33333333334444444444444455677899999999999999988888755433 22222211111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc
Q 000755 525 MTSFVFWGAPTFVSVATFGACMLLGIPLESGKILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIASFLCLDDLQSDV 604 (1300)
Q Consensus 525 ~~~~~~~~~p~~v~~~~f~~~~~~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~ 604 (1300)
....++ +..+....+.+..-+..+.+|.|.+....++...+..|+..+......+.|++.-.++..+.+..+-...+.
T Consensus 172 gQ~~I~--~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~d~ 249 (497)
T COG5265 172 GQTAIF--STGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDA 249 (497)
T ss_pred hhHHHH--HHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhccC
Confidence 111111 111122233344455678899999999999999999999999999999999999999999888655333322
Q ss_pred ccCCCCC-CCcceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe--
Q 000755 605 VEKHPRG-SSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-- 681 (1300)
Q Consensus 605 ~~~~~~~-~~~~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-- 681 (1300)
....+.. ...+.+.|++++|.|++ .+|+|+++||++++|+++||||++|+||||++++|.++|++.+|.|.++|+
T Consensus 250 pda~~L~~~~~g~v~F~~V~F~y~~--~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdi 327 (497)
T COG5265 250 PDAPPLWPVRLGAVAFINVSFAYDP--RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDI 327 (497)
T ss_pred CCCccccccccceEEEEEEEeeccc--cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhH
Confidence 2211111 23457999999999974 579999999999999999999999999999999999999999999999994
Q ss_pred -----------EEEEecCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHH
Q 000755 682 -----------KAYVAQSPWIQSGNIEDNILFGKP-MDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQR 749 (1300)
Q Consensus 682 -----------~ayv~Q~~~l~~~Ti~eNI~fg~~-~~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqR 749 (1300)
||.|||+..+||+|+..||.+|+| ..+++...+.+++++.+.++.+|+|++|.+||+|-.||||+|||
T Consensus 328 r~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqr 407 (497)
T COG5265 328 RDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQR 407 (497)
T ss_pred HHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHH
Confidence 699999999999999999999998 57888999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHh
Q 000755 750 IQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILN 829 (1300)
Q Consensus 750 iaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 829 (1300)
+++||+++++|+|++|||+|||||.+|++.| +..++...+++|.++|.||++.+-.||.|+||++|+|+|.|+|+||++
T Consensus 408 vaiar~ilk~p~il~~deatsaldt~te~~i-q~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll~ 486 (497)
T COG5265 408 VAIARTILKNPPILILDEATSALDTHTEQAI-QAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLA 486 (497)
T ss_pred HHHHHHHhcCCCEEEEehhhhHhhhhHHHHH-HHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHHH
Confidence 9999999999999999999999999999988 566777889999999999999999999999999999999999999999
Q ss_pred cCchHHHHH
Q 000755 830 SGTDFMVLV 838 (1300)
Q Consensus 830 ~~~~~~~l~ 838 (1300)
.++.|.++.
T Consensus 487 ~~g~ya~mw 495 (497)
T COG5265 487 AGGLYAEMW 495 (497)
T ss_pred cCChHHHHh
Confidence 999887764
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-53 Score=535.14 Aligned_cols=503 Identities=17% Similarity=0.138 Sum_probs=366.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 301 EIVFTAILALLYTLANYVGPYLIDTFVQYLNGERE--FKNEGYVLVSTFFVAKIVECLAQRHWMFRLQVAGIKMRSVLVS 378 (1300)
Q Consensus 301 ~~~~~~l~~l~~~~~~~~~P~ll~~li~~l~~~~~--~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~g~~ir~~L~~ 378 (1300)
.++..+++.++.+++....|++.+.++|.+...+. +....+.+++++++..++.++.... .+++..++|..+..
T Consensus 97 ~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~~----~~~~~~~~r~~l~~ 172 (659)
T TIGR00954 97 LLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKYL----LKELKLRFRVRLTR 172 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 56777788888899999999999999998764332 1111222233333333444444333 44445555555555
Q ss_pred HHHHHHhc----CCchhhcCCCHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 000755 379 MVYNKGLT----LSCQAKQSYTSGEIINFMTVDAERIGDFGWY-MHDPWLVILQVSLALLILYKNLGLA-SIAALFATVL 452 (1300)
Q Consensus 379 ~Iy~K~L~----ls~~~~~~~~~G~Ivnl~s~Dv~~i~~~~~~-~~~~~~~~l~i~~~l~lL~~~lg~~-~l~~l~~~~l 452 (1300)
.+.++.++ .+...+++ ++|++++++++|++.+.+.+.. +..+...++.++.+++.++..+++. +++.++..++
T Consensus 173 ~l~~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l 251 (659)
T TIGR00954 173 YLYSKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFA 251 (659)
T ss_pred HHHHHHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 55554443 34334443 5799999999999999887543 4455556666666766666544543 2334455556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 453 IMLTNFPLGRLQENFQDKLMGSKDKRMKVTSEILRNMRILKLQGWEMKFLSKIIELRKIEAGWLKKFLYTGAMTSFVFWG 532 (1300)
Q Consensus 453 ~~~~~~~~~k~~~~~~~~~~~~~d~r~~~~~E~L~~ir~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~ 532 (1300)
...+...+.+...+...+.++..++.....+|.++|+++||.|+.|+.+.+++.+.-+.-.+...+.....+....+...
T Consensus 252 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 331 (659)
T TIGR00954 252 TGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNI 331 (659)
T ss_pred HHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 66677778888899999999999999999999999999999999999888887664433333333322222222211111
Q ss_pred H----HHHHHHHHHHHHHHh-c----CCcCHHHHHH-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 000755 533 A----PTFVSVATFGACMLL-G----IPLESGKILS-ALA---TFRILQEPIYNLPDTISMIIQTKVSLDRIASFLCLDD 599 (1300)
Q Consensus 533 ~----p~~v~~~~f~~~~~~-~----~~Lt~g~vft-~la---l~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e 599 (1300)
. ...+..+..+..++. . +.+|.|..++ +++ ++..+..|+..+...+..+.++.++.+||.++++.++
T Consensus 332 i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~ 411 (659)
T TIGR00954 332 VAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLD 411 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 111222222232222 1 5688887655 333 3567789999999999999999999999999996532
Q ss_pred CCc------ccccC-----------------CCCCCCcceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCC
Q 000755 600 LQS------DVVEK-----------------HPRGSSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGS 656 (1300)
Q Consensus 600 ~~~------~~~~~-----------------~~~~~~~~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~Gs 656 (1300)
..+ ..... .......+.|+++|++|+|+. ++++|+|+||+|++||+++|+|||||
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~--~~~il~~isl~i~~Ge~~~IvG~nGs 489 (659)
T TIGR00954 412 DVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPN--GDVLIESLSFEVPSGNHLLICGPNGC 489 (659)
T ss_pred HHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCC--CCeeeecceEEECCCCEEEEECCCCC
Confidence 110 00000 000012346999999999963 34799999999999999999999999
Q ss_pred ChHHHHHHHhccccCCccEEEEcC--eEEEEecCCcCCCCCHHHHHhcCC--------CCCHHHHHHHHHHhcchHHHhh
Q 000755 657 GKSSLLSCILGEVPKISGTLKLCG--TKAYVAQSPWIQSGNIEDNILFGK--------PMDREKYDRVLEACSLKKDLEI 726 (1300)
Q Consensus 657 GKSTLl~~llG~~~~~~G~i~~~g--~~ayv~Q~~~l~~~Ti~eNI~fg~--------~~~~~~~~~vl~~~~l~~dl~~ 726 (1300)
|||||+++|+|+++|++|+|.+++ .++||+|+|+++++|++|||.++. ..++++.+++++.+++.+.++.
T Consensus 490 GKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~ 569 (659)
T TIGR00954 490 GKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER 569 (659)
T ss_pred CHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhh
Confidence 999999999999999999999865 689999999999999999999974 2456788899999999988877
Q ss_pred ccCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCcccc
Q 000755 727 LSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPA 806 (1300)
Q Consensus 727 l~~Gd~t~ige~g~~LSGGQkqRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~ 806 (1300)
|.|++|..+ .+.+||||||||++||||++++|+++|||||||+||+++++.+.+. +.. .++|+|+|||+++.+..
T Consensus 570 -~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~-l~~--~~~tvI~isH~~~~~~~ 644 (659)
T TIGR00954 570 -EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRL-CRE--FGITLFSVSHRKSLWKY 644 (659)
T ss_pred -cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHH-HHH--cCCEEEEEeCchHHHHh
Confidence 899999876 5779999999999999999999999999999999999999888654 443 38999999999999999
Q ss_pred CCEEEEEeC
Q 000755 807 ADLILVMKD 815 (1300)
Q Consensus 807 ~d~i~~l~~ 815 (1300)
||+|++|+.
T Consensus 645 ~d~il~l~~ 653 (659)
T TIGR00954 645 HEYLLYMDG 653 (659)
T ss_pred CCEEEEEeC
Confidence 999999974
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-53 Score=541.14 Aligned_cols=474 Identities=20% Similarity=0.220 Sum_probs=358.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchhhcCCCHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHH
Q 000755 363 FRLQVAGIKMRSVLVSMVYNKGLTLSCQAKQSYTSGEIINFMTVDAERIGDFGW-YMHDPWLVILQVSLALLILYKNLGL 441 (1300)
Q Consensus 363 ~~~~~~g~~ir~~L~~~Iy~K~L~ls~~~~~~~~~G~Ivnl~s~Dv~~i~~~~~-~~~~~~~~~l~i~~~l~lL~~~lg~ 441 (1300)
+.....+++.-..|-..++++.++-+..+++..++|.|+|+.+.|++.+++... .+.......++++.+++++-....+
T Consensus 880 ~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~ 959 (1381)
T KOG0054|consen 880 FLFAKGGLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPW 959 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHH
Confidence 344556778888888889999999999999999999999999999999997644 3444445555555555555443333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHH-
Q 000755 442 ASIAALFATVLIMLTNFPLGRLQENFQDKLMGSKDKRMKVTSEILRNMRILKLQGWEMKFLSKIIELRKIEAGWLKKFL- 520 (1300)
Q Consensus 442 ~~l~~l~~~~l~~~~~~~~~k~~~~~~~~~~~~~d~r~~~~~E~L~~ir~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~- 520 (1300)
..++.+.+.++...+..++.+..+...+--...+.=-.+.++|.++|+-+|+.|+.|+.|.++..+.-+...+..-...
T Consensus 960 fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~ 1039 (1381)
T KOG0054|consen 960 FLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSIS 1039 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3333333333333333332222222222222233444568999999999999999999999887654433322111100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 000755 521 YTGAMTSFVFWGAPTFVSVATFGACMLLGIPLESGKILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIASFLCLDDL 600 (1300)
Q Consensus 521 ~~~~~~~~~~~~~p~~v~~~~f~~~~~~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~ 600 (1300)
..+.+..-+-.....++..+++.+.+..++..++|.+=-++++.-.+..-+..+-.....+-...+|.+||.+|.+.|++
T Consensus 1040 a~RWla~Rle~ig~~~v~~~al~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E 1119 (1381)
T KOG0054|consen 1040 ANRWLAVRLELLGNLVVLIAALFAVLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSE 1119 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCC
Confidence 00000001111122222222222222223337788887777777777777777777788888889999999999986654
Q ss_pred CcccccCC-CC--CCCcceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEE
Q 000755 601 QSDVVEKH-PR--GSSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLK 677 (1300)
Q Consensus 601 ~~~~~~~~-~~--~~~~~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~ 677 (1300)
.+...+.. |+ =+.++.|+|+|++.+|.++ .+++||||||+|++||+++|||++|||||||+++|.+..+|.+|+|.
T Consensus 1120 ~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~-lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~ 1198 (1381)
T KOG0054|consen 1120 APLEIEESRPPPSWPSKGEIEFEDLSLRYRPN-LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEIL 1198 (1381)
T ss_pred CCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCC-CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEE
Confidence 22222111 22 2356899999999999865 57899999999999999999999999999999999999999999999
Q ss_pred EcC-------------eEEEEecCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCH
Q 000755 678 LCG-------------TKAYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSG 744 (1300)
Q Consensus 678 ~~g-------------~~ayv~Q~~~l~~~Ti~eNI~fg~~~~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSG 744 (1300)
+|| +++.+||||.+|+||+|.|+==-.++++++.+++++.|.|++.++.+|.|.+++|.|+|.|+|-
T Consensus 1199 IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~Sv 1278 (1381)
T KOG0054|consen 1199 IDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSV 1278 (1381)
T ss_pred EcCeecccccHHHHHhcCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCCh
Confidence 998 3599999999999999999976667899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecCh
Q 000755 745 GQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKY 824 (1300)
Q Consensus 745 GQkqRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~~d~i~~l~~G~i~~~g~~ 824 (1300)
||||-++|||||+++++|++|||+|+++|++|.. +.++.++...+++|||.|+||++.+..+|||+|||+|+|+|.|+|
T Consensus 1279 GQRQLlCLARALLr~skILvLDEATAsVD~~TD~-lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP 1357 (1381)
T KOG0054|consen 1279 GQRQLLCLARALLRKSKILVLDEATASVDPETDA-LIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSP 1357 (1381)
T ss_pred HHHHHHHHHHHHhccCCEEEEecccccCChHHHH-HHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEeecCCh
Confidence 9999999999999999999999999999999954 558899999999999999999999999999999999999999999
Q ss_pred HHHHhcC-chHHHHH
Q 000755 825 NDILNSG-TDFMVLV 838 (1300)
Q Consensus 825 ~~l~~~~-~~~~~l~ 838 (1300)
.+|+++. ..|.+.+
T Consensus 1358 ~~Ll~~~~S~f~~~l 1372 (1381)
T KOG0054|consen 1358 AELLSDKDSLFSSLL 1372 (1381)
T ss_pred HHHHhCCcchHHHHH
Confidence 9999764 4454343
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-51 Score=510.18 Aligned_cols=363 Identities=18% Similarity=0.163 Sum_probs=285.8
Q ss_pred HHHHHHHhhhhhhHHHHHHHHhhchHHHHHhcchH--HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 899 RELSRLVGVCKAPVIQHFSETISGSTTIRSFDQES--RFRDTNMKLVDGYSRPKFHIAGAMEWLCFRLDMLSSLTFAFSL 976 (1300)
Q Consensus 899 r~l~rl~~~~~sp~~~~~~E~l~G~~tIraf~~e~--~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~ 976 (1300)
++..+......+.+.+++.|.+.|+.++|+|+.++ ...+++.+..+++.+................+++..+..++.+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (555)
T TIGR01194 177 FKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFIAAENFGQLLFFLLIGCAL 256 (555)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444556788999999999999999999854 3344555544444443332222222111222222222111111
Q ss_pred HHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcc--cc-CCC--CCCCCC
Q 000755 977 VLLISIPKGVIEPAIAGLAVTYGLNLNMLQAWVIWNLCNLENKIISVERILQYTCISSEPPLVI--EE-SRP--DCSWPT 1051 (1300)
Q Consensus 977 ~~~~~~~~g~~~~~~~gl~l~~~~~~~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~--~~-~~~--~~~wp~ 1051 (1300)
++ ....|.++.|.+..++.|...+..++..+...+.+++....|.+|+.++.+.+.+++... ++ ... .+....
T Consensus 257 ~~--~~~~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (555)
T TIGR01194 257 FA--AAMFASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKS 334 (555)
T ss_pred HH--HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccCCC
Confidence 11 112367888988889999999999999999999999999999999999976432221110 00 000 011123
Q ss_pred CceEEEEeeeeeeCCC---CCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHH
Q 000755 1052 HGEVDILNLQVRYAPH---LPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDL 1128 (1300)
Q Consensus 1052 ~g~i~~~~v~~~y~~~---~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~l 1128 (1300)
.+.|+++||+++|++. .+++|+|+||++++||++|||||||||||||+++|+|+++|++|+|.+||+|+.+++.+++
T Consensus 335 ~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~ 414 (555)
T TIGR01194 335 VDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDY 414 (555)
T ss_pred CceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHH
Confidence 4689999999999753 2369999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccEEEcCCCCCCcccHHHhcCCCCCCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHcc
Q 000755 1129 RSRLSIIPQDPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLK 1208 (1300)
Q Consensus 1129 r~~i~~vpQ~~~lf~gTvr~Nl~~~~~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~ 1208 (1300)
|++++++|||+.+|++|+++|.. .+.++++++++++.+++++++..+|+|+||. .+||||||||++||||+++
T Consensus 415 ~~~i~~v~q~~~lf~~ti~~n~~--~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-----~~LSgGq~qRlalaRall~ 487 (555)
T TIGR01194 415 RDLFSAIFADFHLFDDLIGPDEG--EHASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TALSTGQQKRLALICAWLE 487 (555)
T ss_pred HhhCcEEccChhhhhhhhhcccc--cchhHHHHHHHHHHcCCchhhcccccccCCc-----ccCCHHHHHHHHHHHHHHc
Confidence 99999999999999999999964 3567899999999999999999999999984 7899999999999999999
Q ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHH-h-cCCcEEEEEeCChhhhhccCEEEEEeCCEEEEe
Q 000755 1209 KSKVLVLDEATASVDTATDNLIQQTLRQ-H-FSDCTVITIAHRITSVIDSDMVLLLSHGIIEEY 1270 (1300)
Q Consensus 1209 ~~~iLlLDEpTs~lD~~t~~~i~~~l~~-~-~~~~Tvi~iaHrl~~i~~~D~v~vl~~G~i~e~ 1270 (1300)
+|+|||||||||+||+++++.+++.+.+ . .+++|+|+||||++++..||+|++|++|+++|.
T Consensus 488 ~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 488 DRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999887643 3 358999999999999989999999999999975
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-51 Score=465.97 Aligned_cols=366 Identities=21% Similarity=0.269 Sum_probs=294.9
Q ss_pred hhhhHHHHHHHHhhchHHHHHhcchHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCc
Q 000755 908 CKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFHIAGAMEWLCFRLDMLSSLTF-AFSLVLLISIPKGV 986 (1300)
Q Consensus 908 ~~sp~~~~~~E~l~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~-~~~~~~~~~~~~g~ 986 (1300)
....-.++...+....++|++.|......+++.+....+........-.+.-++...-.+-.+.- .+..+-......|.
T Consensus 193 ~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge 272 (580)
T COG4618 193 ASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMALQSAVLGLGAWLVIKGE 272 (580)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcceeeEEcCc
Confidence 33445567777889999999999987776666554444332222111111111111111111111 11111123355778
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccCCCCCCCCCCceEEEEeeeeeeCC
Q 000755 987 IEPAIAGLAVTYGLNLNMLQAWVIWNLCNLENKIISVERILQYTCISSEPPLVIEESRPDCSWPTHGEVDILNLQVRYAP 1066 (1300)
Q Consensus 987 ~~~~~~gl~l~~~~~~~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~i~~~~v~~~y~~ 1066 (1300)
+++|.+...-...-..-.++...+..|.++-....|..|+.+.+...++.....+ -| ..+|.+.++++++.-++
T Consensus 273 ~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~~m~---LP---~P~g~L~Ve~l~~~PPg 346 (580)
T COG4618 273 ITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAERMP---LP---APQGALSVERLTAAPPG 346 (580)
T ss_pred CCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCC---CC---CCCceeeEeeeeecCCC
Confidence 8888765544444445566778889999999999999999999875444321111 11 12689999999997766
Q ss_pred CCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEEEcCCCCCCcccH
Q 000755 1067 HLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTV 1146 (1300)
Q Consensus 1067 ~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~vpQ~~~lf~gTv 1146 (1300)
...++++|+||++.+||-+|||||||||||||.++|.|..+|.+|.|.+||-|+.+.+.+++-++|||+|||-.||+|||
T Consensus 347 ~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTI 426 (580)
T COG4618 347 QKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTI 426 (580)
T ss_pred CCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcH
Confidence 66789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCC-CCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCcCCCHH
Q 000755 1147 RNNLDPLE-EYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTA 1225 (1300)
Q Consensus 1147 r~Nl~~~~-~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~~iLlLDEpTs~lD~~ 1225 (1300)
.||+.-+. +.+++.|.++.+.++.+|.|.++|+||||.|||+|..||||||||++||||+..+|.+++||||-|+||.+
T Consensus 427 aeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~ 506 (580)
T COG4618 427 AENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSE 506 (580)
T ss_pred HHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchh
Confidence 99997665 77888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc-CCcEEEEEeCChhhhhccCEEEEEeCCEEEEecChhhHHhc
Q 000755 1226 TDNLIQQTLRQHF-SDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLEN 1279 (1300)
Q Consensus 1226 t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~~D~v~vl~~G~i~e~g~~~~l~~~ 1279 (1300)
-|+.+.++|.+.. +++|+|+||||++.+..+|+|+||++|++..+|+.+|++++
T Consensus 507 GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 507 GEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 9999999998865 58999999999999999999999999999999999999864
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-51 Score=461.37 Aligned_cols=238 Identities=37% Similarity=0.675 Sum_probs=226.6
Q ss_pred ceEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhccc
Q 000755 1053 GEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRL 1132 (1300)
Q Consensus 1053 g~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i 1132 (1300)
|.|+++|++++|+++.+++|+|+||+|++||++||+||||||||||+++|+|+++ .+|+|++||.++..++..++|+++
T Consensus 1 g~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred CeEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 5799999999997555679999999999999999999999999999999999998 789999999999999999999999
Q ss_pred EEEcCCCCCCcccHHHhcCCCCCCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCE
Q 000755 1133 SIIPQDPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKV 1212 (1300)
Q Consensus 1133 ~~vpQ~~~lf~gTvr~Nl~~~~~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~~i 1212 (1300)
+|+||+|.+|++|+++|++++...++++++++++.+++.+++.++|++||+.++++|.+||+|||||+|||||++++|+|
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i 159 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 159 (275)
T ss_pred EEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999988776788999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhccCEEEEEeCCEEEEecChhhHHhcCCChHHHHHHHHh
Q 000755 1213 LVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLVAEYT 1292 (1300)
Q Consensus 1213 LlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~~D~v~vl~~G~i~e~g~~~~l~~~~~~~f~~l~~~~~ 1292 (1300)
|||||||++||+.+++.+++.|++.+.++|||+||||++++..||||++|++|+++++|+|++++++ .+.|++++.+..
T Consensus 160 lllDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~~~~ 238 (275)
T cd03289 160 LLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNE-KSHFKQAISPSD 238 (275)
T ss_pred EEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhC-cHHHHHHHhhcc
Confidence 9999999999999999999999988788999999999999999999999999999999999999985 589999997665
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-50 Score=462.43 Aligned_cols=473 Identities=20% Similarity=0.323 Sum_probs=312.4
Q ss_pred cceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCeEEEEecCCcCCC
Q 000755 614 ETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQS 693 (1300)
Q Consensus 614 ~~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~~ayv~Q~~~l~~ 693 (1300)
..+|.+.|.++++. ..+.++|..|++.+|++++|+|+|||||||+|++|.|-..|..-.+.+ ...+++..--.
T Consensus 73 s~dvk~~sls~s~~---g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~----y~ls~e~~ps~ 145 (614)
T KOG0927|consen 73 SRDVKIESLSLSFH---GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDF----YLLSREIEPSE 145 (614)
T ss_pred cccceeeeeeeccC---CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccch----hhhcccCCCch
Confidence 34799999999996 467999999999999999999999999999999999988775543321 22233221111
Q ss_pred CCHHHHHhcCCCC-------CHHHHHHHHHHhc-------------chHH-----Hhh-c-cCC-CcccccCCCCCCCHH
Q 000755 694 GNIEDNILFGKPM-------DREKYDRVLEACS-------------LKKD-----LEI-L-SFG-DQTVIGERGINLSGG 745 (1300)
Q Consensus 694 ~Ti~eNI~fg~~~-------~~~~~~~vl~~~~-------------l~~d-----l~~-l-~~G-d~t~ige~g~~LSGG 745 (1300)
.+..+-+.+-..- -.|+|...++.-. ++.| +.. + ..| ..........+||||
T Consensus 146 ~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgG 225 (614)
T KOG0927|consen 146 KQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGG 225 (614)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCch
Confidence 1222222211110 1112222111100 0000 000 0 112 233445567899999
Q ss_pred HHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCc-EEEEEecCCCcccc-CCEEEEEeCCe-EEEec
Q 000755 746 QKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSK-TVIYVTHQVEFLPA-ADLILVMKDGK-ITQAG 822 (1300)
Q Consensus 746 QkqRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~-TvIlvtH~~~~l~~-~d~i~~l~~G~-i~~~g 822 (1300)
||.|++|||||..+|++|||||||++||.++..++- +.+... ++ |+|+++|..++++. |.+|+.|++++ +.+.|
T Consensus 226 wrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLe-e~L~k~--d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~G 302 (614)
T KOG0927|consen 226 WRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLE-EYLAKY--DRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEG 302 (614)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHH-HHHHhc--cCceEEEEecchhhhhhHhhhhheecccceeeecC
Confidence 999999999999999999999999999999977663 333332 44 89999999999998 99999999999 77999
Q ss_pred ChHHHHhcCchHHHHHHHHHHHhhhhcccCCCCccccccccccCCCccccccccccCccccccccchhhhhhhHHHHHHH
Q 000755 823 KYNDILNSGTDFMVLVGAHQQALSALDSIEGGPVSERISMNKENGGMDTTNGVTMKEGNEDIQTDKVDEQYYIPSARELS 902 (1300)
Q Consensus 823 ~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~~lp~grnr~s~D~v~~~~y~~~~r~l~ 902 (1300)
+|+++.....+..+. +
T Consensus 303 nydqy~~tr~E~~~~--------------------------------------------------------------q-- 318 (614)
T KOG0927|consen 303 NYDQYVKTRSELEEN--------------------------------------------------------------Q-- 318 (614)
T ss_pred CHHHHhhHHHHHhHH--------------------------------------------------------------H--
Confidence 999987543211100 0
Q ss_pred HHHhhhhhhHHHHHHHHhhchHHHHHhcchHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000755 903 RLVGVCKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFHIAGAMEWLCFRLDMLSSLTFAFSLVLLISI 982 (1300)
Q Consensus 903 rl~~~~~sp~~~~~~E~l~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~~~~ 982 (1300)
.+.|.+++.-.+....++.. .
T Consensus 319 -----------------------~K~~~kqqk~i~~~K~~ia~------------------------------------~ 339 (614)
T KOG0927|consen 319 -----------------------MKAYEKQQKQIAHMKDLIAR------------------------------------F 339 (614)
T ss_pred -----------------------HHHHHHHHhHHHHhhHHHHh------------------------------------h
Confidence 00111111111110000000 0
Q ss_pred cCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----CCCCCCCccccCCCCCCCCCCceEEE
Q 000755 983 PKGVIEPAIAGLAVTYGLNLNMLQAWVIWNLCNLENKIISVERILQYTC-----ISSEPPLVIEESRPDCSWPTHGEVDI 1057 (1300)
Q Consensus 983 ~~g~~~~~~~gl~l~~~~~~~~~~~~~~~~~~~le~~~~sveRi~~~~~-----~~~e~~~~~~~~~~~~~wp~~g~i~~ 1057 (1300)
..| .+ .+.....|.+...+-+. .+.....+..-..|...--....|.+
T Consensus 340 g~g--~a-------------------------~~~rka~s~~K~~~km~~~gL~ek~~~~k~l~~~f~~vg~~p~pvi~~ 392 (614)
T KOG0927|consen 340 GHG--SA-------------------------KLGRKAQSKEKTLDKMEADGLTEKVVGEKVLSFRFPEVGKIPPPVIMV 392 (614)
T ss_pred ccc--ch-------------------------hhhHHHhhhhhhHHHHhhccccccccCCceEEEEcccccCCCCCeEEE
Confidence 000 00 00000011111111110 00000000000000000001236999
Q ss_pred EeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEEEcC
Q 000755 1058 LNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQ 1137 (1300)
Q Consensus 1058 ~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~vpQ 1137 (1300)
+|++|+|.++. .++++++|-|..++++++|||||+|||||++++.|.+.|..|.|.-.-.. ++++.-|
T Consensus 393 ~nv~F~y~~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~-----------~~~~y~Q 460 (614)
T KOG0927|consen 393 QNVSFGYSDNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHN-----------KLPRYNQ 460 (614)
T ss_pred eccccCCCCcc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccc-----------cchhhhh
Confidence 99999998764 79999999999999999999999999999999999999999988654321 2334444
Q ss_pred CC---CCCcccHHHhcCC-CC-CCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCE
Q 000755 1138 DP---TMFEGTVRNNLDP-LE-EYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKV 1212 (1300)
Q Consensus 1138 ~~---~lf~gTvr~Nl~~-~~-~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~~i 1212 (1300)
.. ..++-|.-+++.+ +. .-..+++...|.++||....+.. ++ ++||+|||.||++||+++++|.|
T Consensus 461 h~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~------p~----~~LS~Gqr~rVlFa~l~~kqP~l 530 (614)
T KOG0927|consen 461 HLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVV------PM----SQLSDGQRRRVLFARLAVKQPHL 530 (614)
T ss_pred hhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCcccccc------ch----hhcccccchhHHHHHHHhcCCcE
Confidence 32 3456677777654 23 34567788899999997543332 23 57999999999999999999999
Q ss_pred EEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEe
Q 000755 1213 LVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEY 1270 (1300)
Q Consensus 1213 LlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~ 1270 (1300)
|||||||++||.++...+.++|.++ ..+||+|||+...|.. +++|++.++|.+...
T Consensus 531 LlLDEPtnhLDi~tid~laeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~ 587 (614)
T KOG0927|consen 531 LLLDEPTNHLDIETIDALAEAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTKW 587 (614)
T ss_pred EEecCCCcCCCchhHHHHHHHHhcc--CCceeeeechhhHHHHHHHHhHhhccCceeec
Confidence 9999999999999999999999876 6799999999999988 999999999998764
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-48 Score=480.37 Aligned_cols=355 Identities=17% Similarity=0.197 Sum_probs=264.0
Q ss_pred HHHHHHHhhhhhhHHHHHHHHhhchHHHHHhcch---HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 899 RELSRLVGVCKAPVIQHFSETISGSTTIRSFDQE---SRFRDTNMKLVDGYSRPKFHIAGAMEWLCFRLDMLSSLTFAFS 975 (1300)
Q Consensus 899 r~l~rl~~~~~sp~~~~~~E~l~G~~tIraf~~e---~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~ 975 (1300)
+...+......+...+++.|.++|+.+++ ++.+ +.+.+++.+..+...+..................+...++++.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (547)
T PRK10522 172 YKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQEYRHHIIRADTFHLSAVNWSNIMMLGAIGLV 250 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344566788999999999999995 4433 3455666555555443332221111111111111111111111
Q ss_pred HHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccCCCCCCCCCCceE
Q 000755 976 LVLLISIPKGVIEPAIAGLAVTYGLNLNMLQAWVIWNLCNLENKIISVERILQYTCISSEPPLVIEESRPDCSWPTHGEV 1055 (1300)
Q Consensus 976 ~~~~~~~~~g~~~~~~~gl~l~~~~~~~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~i 1055 (1300)
.++.... +....+.+++...+.+.+..++..+...+.++.....+.+|+.++.+.+.++.. +...+. |..+.|
T Consensus 251 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~--~~~~~~---~~~~~i 323 (547)
T PRK10522 251 FYMANSL--GWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEF--PRPQAF---PDWQTL 323 (547)
T ss_pred HHHHHHh--hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc--cccccc---CcCceE
Confidence 1111111 112333344444444455677888888889999999999999998765443211 111111 223579
Q ss_pred EEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEEE
Q 000755 1056 DILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSII 1135 (1300)
Q Consensus 1056 ~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~v 1135 (1300)
+++||+|+|+++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+|+++++.+++|++++|+
T Consensus 324 ~~~~v~f~y~~~-~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v 402 (547)
T PRK10522 324 ELRNVTFAYQDN-GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAV 402 (547)
T ss_pred EEEEEEEEeCCC-CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEE
Confidence 999999999753 4699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcccHHHhcCCCCCCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEE
Q 000755 1136 PQDPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVL 1215 (1300)
Q Consensus 1136 pQ~~~lf~gTvr~Nl~~~~~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~~iLlL 1215 (1300)
||||.+|++|+++| ....++++++++++++++.+.+.. +++. .+|.+||||||||++||||++++|+||||
T Consensus 403 ~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~~-~~~~-----~~G~~LSgGq~qRl~lARal~~~~~ilil 473 (547)
T PRK10522 403 FTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKLEL-EDGR-----ISNLKLSKGQKKRLALLLALAEERDILLL 473 (547)
T ss_pred ecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhhhc-cccC-----CCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999 235678889999999998776543 3332 14889999999999999999999999999
Q ss_pred eCCCcCCCHHHHHHHHHHHHHhc--CCcEEEEEeCChhhhhccCEEEEEeCCEEEEec
Q 000755 1216 DEATASVDTATDNLIQQTLRQHF--SDCTVITIAHRITSVIDSDMVLLLSHGIIEEYD 1271 (1300)
Q Consensus 1216 DEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~iaHrl~~i~~~D~v~vl~~G~i~e~g 1271 (1300)
|||||+||+++++.+.+.+.+.. +++|+|+||||++++..||+|++|++|+++|..
T Consensus 474 DE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~~ 531 (547)
T PRK10522 474 DEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSELT 531 (547)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEec
Confidence 99999999999999999987654 479999999999999999999999999999873
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-47 Score=442.66 Aligned_cols=257 Identities=22% Similarity=0.375 Sum_probs=218.5
Q ss_pred HHHHHHHHHHhhcCCCCCCCccc------cCCC---CCCCCCCceEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEEC
Q 000755 1019 KIISVERILQYTCISSEPPLVIE------ESRP---DCSWPTHGEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVG 1089 (1300)
Q Consensus 1019 ~~~sveRi~~~~~~~~e~~~~~~------~~~~---~~~wp~~g~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG 1089 (1300)
.+.+++|+.+|...+.|.....+ +..+ +..||..+.|+++|++++|++..+++|+|+||+|++||++||+|
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG 115 (329)
T PRK14257 36 KLNKYQRAFAWLKLPKQKKAELKQFLNKKKTQVDLLKEDFNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIG 115 (329)
T ss_pred ccccccchhhHHhcccccchhhhhcccccccccccccCCCCcCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEEC
Confidence 45667777777766554322111 1111 34699999999999999997555679999999999999999999
Q ss_pred CCCCcHHHHHHHHhcCCC-----CCcceEEECCeecC--CCCHHHHhcccEEEcCCCCCCcccHHHhcCCC---CCCCHH
Q 000755 1090 RTGSGKSTLIQTLFRIVE-----PTAGEIVIDGINIS--SIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPL---EEYKDE 1159 (1300)
Q Consensus 1090 ~tGsGKSTLl~~L~gl~~-----p~~G~I~idg~di~--~i~~~~lr~~i~~vpQ~~~lf~gTvr~Nl~~~---~~~~d~ 1159 (1300)
|||||||||+++|+|+++ |++|+|.+||+++. .++...+|++++|+||+|.+|++|+++|+++. ...+++
T Consensus 116 ~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~ 195 (329)
T PRK14257 116 PSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDR 195 (329)
T ss_pred CCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChH
Confidence 999999999999999997 57999999999997 45667889999999999999999999999842 234444
Q ss_pred H-----HHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHH
Q 000755 1160 E-----IWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTL 1234 (1300)
Q Consensus 1160 ~-----i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l 1234 (1300)
+ +.++++.+++.+ ++++.+++.|.+||||||||+|||||++++|+||||||||++||+.+.+.+++.|
T Consensus 196 ~~~~~~~~~~l~~~~L~~-------~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i 268 (329)
T PRK14257 196 KILEKIVEKSLKSAALWD-------EVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELI 268 (329)
T ss_pred HHHHHHHHHHHHHcCCcc-------hhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 4 355678887643 4567788999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHHhcCCC
Q 000755 1235 RQHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENKSS 1282 (1300)
Q Consensus 1235 ~~~~~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~~~~~~ 1282 (1300)
++.++++|+|+|||+++++.+ ||||+||++|+|+|.|+|+++++++..
T Consensus 269 ~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~~~~~ 317 (329)
T PRK14257 269 LELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIHPKN 317 (329)
T ss_pred HHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCCCc
Confidence 998888999999999999998 999999999999999999999976654
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-47 Score=434.76 Aligned_cols=457 Identities=22% Similarity=0.312 Sum_probs=317.2
Q ss_pred ceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC-------eEEEEec
Q 000755 615 TAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-------TKAYVAQ 687 (1300)
Q Consensus 615 ~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g-------~~ayv~Q 687 (1300)
.+|.+.+.+.+|. .+..|.+-++++..|-++++||+||+||||||++|.. |.|..-. -.-..-|
T Consensus 79 ~Di~~~~fdLa~G---~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~veqE~~g~~t~~~~ 149 (582)
T KOG0062|consen 79 KDIHIDNFDLAYG---GKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQEVRGDDTEALQ 149 (582)
T ss_pred cceeeeeeeeeec---chhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCchhheeccchHHHh
Confidence 4678888888885 5789999999999999999999999999999999986 3332111 0001111
Q ss_pred CCcCCCCCHHHHHhcCCC---C--C-HHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHHHHHccCCC
Q 000755 688 SPWIQSGNIEDNILFGKP---M--D-REKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDAD 761 (1300)
Q Consensus 688 ~~~l~~~Ti~eNI~fg~~---~--~-~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLARAly~~~~ 761 (1300)
+ -+-.+|-+.-.+.-.+ . + ++-|.+++...+..++....|- ..||||-|-|++|||||.++||
T Consensus 150 ~-~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt----------~slSGGWrMrlaLARAlf~~pD 218 (582)
T KOG0062|consen 150 S-VLESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPT----------KSLSGGWRMRLALARALFAKPD 218 (582)
T ss_pred h-hhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccc----------cccCcchhhHHHHHHHHhcCCC
Confidence 1 1222333333332221 0 1 2334447777777777776653 4799999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCcccc-CCEEEEEeCCeEE-EecChHHHHhcCchHHHHHH
Q 000755 762 IYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPA-ADLILVMKDGKIT-QAGKYNDILNSGTDFMVLVG 839 (1300)
Q Consensus 762 illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~-~~g~~~~l~~~~~~~~~l~~ 839 (1300)
||||||||++||.....++- +.+..+ ..|+|+|||+..||+. |.-|+.+++-++- +.|+|++..+...+
T Consensus 219 lLLLDEPTNhLDv~av~WLe-~yL~t~--~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk~k~E------ 289 (582)
T KOG0062|consen 219 LLLLDEPTNHLDVVAVAWLE-NYLQTW--KITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVKTKPE------ 289 (582)
T ss_pred EEeecCCcccchhHHHHHHH-HHHhhC--CceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHHhhHH------
Confidence 99999999999999877663 333332 3799999999999997 8999999887765 67887776543221
Q ss_pred HHHHHhhhhcccCCCCccccccccccCCCccccccccccCccccccccchhhhhhhHHHHHHHHHHhhhhhhHHHHHHHH
Q 000755 840 AHQQALSALDSIEGGPVSERISMNKENGGMDTTNGVTMKEGNEDIQTDKVDEQYYIPSARELSRLVGVCKAPVIQHFSET 919 (1300)
Q Consensus 840 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~~lp~grnr~s~D~v~~~~y~~~~r~l~rl~~~~~sp~~~~~~E~ 919 (1300)
+.... |+-|
T Consensus 290 ----~~~n~------------------------------------------qref------------------------- 298 (582)
T KOG0062|consen 290 ----AKKNQ------------------------------------------QREF------------------------- 298 (582)
T ss_pred ----hhhhh------------------------------------------hhhc-------------------------
Confidence 10000 0000
Q ss_pred hhchHHHHHhcchHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Q 000755 920 ISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFHIAGAMEWLCFRLDMLSSLTFAFSLVLLISIPKGVIEPAIAGLAVTYG 999 (1300)
Q Consensus 920 l~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~gl~l~~~ 999 (1300)
-.+...++......|.++-+ +.-.+
T Consensus 299 ----------e~q~~~R~h~q~fid~FrYn-----------------------------------a~ra~---------- 323 (582)
T KOG0062|consen 299 ----------EVQMKYRAHLQVFIDKFRYN-----------------------------------AARAS---------- 323 (582)
T ss_pred ----------chHHHHHHHHHHHHHHhccC-----------------------------------cccch----------
Confidence 00001111111111111100 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC----ccccCCCC-CCCCCCceEEEEeeeeeeCCCCCcceee
Q 000755 1000 LNLNMLQAWVIWNLCNLENKIISVERILQYTCISSEPPL----VIEESRPD-CSWPTHGEVDILNLQVRYAPHLPLVLRG 1074 (1300)
Q Consensus 1000 ~~~~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~----~~~~~~~~-~~wp~~g~i~~~~v~~~y~~~~~~vL~~ 1074 (1300)
.++ .||.-+-..|.-.+. .+...-|. ..-+++..+++.+|+|.|.++.++.+++
T Consensus 324 ---------------svq------SRIk~L~kl~~lk~~~~~~~~~~~fP~~~e~~~~p~l~i~~V~f~y~p~~y~~~~~ 382 (582)
T KOG0062|consen 324 ---------------SVQ------SRIKMLGKLPALKSTLIEVLIGFLFPTEGEVLSPPNLRISYVAFEYTPSEYQWRKQ 382 (582)
T ss_pred ---------------hHH------HHHHHhccCCCCCccceecccceecCCCCCcCCCCeeEEEeeeccCCCcchhhhhc
Confidence 000 122222112211110 01111122 1223456799999999999887789999
Q ss_pred eeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEEEcCCCCCC-cccHHH--hc-
Q 000755 1075 LTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDPTMF-EGTVRN--NL- 1150 (1300)
Q Consensus 1075 isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~vpQ~~~lf-~gTvr~--Nl- 1150 (1300)
+++.+..-+++++||+||+||||+++++.+-.+|..|.+.+.+ |.+|+|-.|...-+ +-.+-. -+
T Consensus 383 ~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~ri~~f~Qhhvd~l~~~v~~vd~~~ 451 (582)
T KOG0062|consen 383 LGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLRIKYFAQHHVDFLDKNVNAVDFME 451 (582)
T ss_pred cCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cceecchhHhhhhHHHHHhHHHHHHH
Confidence 9999999999999999999999999999999999999988875 67899999976533 222211 11
Q ss_pred CCCCCCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHH
Q 000755 1151 DPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLI 1230 (1300)
Q Consensus 1151 ~~~~~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~~iLlLDEpTs~lD~~t~~~i 1230 (1300)
..++..+++|++..|...|+...+...+ -..||||||-||++|.....+|.+|||||||++||.++-..+
T Consensus 452 ~~~pG~~~ee~r~hl~~~Gl~g~la~~s----------i~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL 521 (582)
T KOG0062|consen 452 KSFPGKTEEEIRRHLGSFGLSGELALQS----------IASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGAL 521 (582)
T ss_pred HhCCCCCHHHHHHHHHhcCCCchhhhcc----------ccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHH
Confidence 1123448999999999998876554332 246899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEe
Q 000755 1231 QQTLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEY 1270 (1300)
Q Consensus 1231 ~~~l~~~~~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~ 1270 (1300)
-++|+.. +..||+|||+.+.+.. |+.+++.++|+|..+
T Consensus 522 ~~Al~~F--~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~i 560 (582)
T KOG0062|consen 522 AKALKNF--NGGVVLVSHDEEFISSLCKELWVVEDGKVTPI 560 (582)
T ss_pred HHHHHhc--CCcEEEEECcHHHHhhcCceeEEEcCCcEEee
Confidence 9999876 5689999999999988 999999999999863
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-46 Score=393.69 Aligned_cols=217 Identities=28% Similarity=0.447 Sum_probs=194.8
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCC-CCHHHHhccc
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISS-IGLHDLRSRL 1132 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~-i~~~~lr~~i 1132 (1300)
.|+++|++++|+.. .||+|||++|++||++.|+||||||||||+++|.|+.+|++|+|.+||.++.. .+...+|+++
T Consensus 2 mi~i~~l~K~fg~~--~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 2 MIEIKNLSKSFGDK--EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred eEEEEeeeEEeCCe--EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence 48999999999865 59999999999999999999999999999999999999999999999987743 3678899999
Q ss_pred EEEcCCCCCCcc-cHHHhcCCCC----CCCH----HHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHH
Q 000755 1133 SIIPQDPTMFEG-TVRNNLDPLE----EYKD----EEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLG 1203 (1300)
Q Consensus 1133 ~~vpQ~~~lf~g-Tvr~Nl~~~~----~~~d----~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LA 1203 (1300)
|+|+|+..||+- |+.+|+.... ..+. +...+.|+++||.+.....|. .||||||||+|||
T Consensus 80 GmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~-----------qLSGGQqQRVAIA 148 (240)
T COG1126 80 GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPA-----------QLSGGQQQRVAIA 148 (240)
T ss_pred CeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCcc-----------ccCcHHHHHHHHH
Confidence 999999999976 9999986321 2222 335568999999988887774 5699999999999
Q ss_pred HHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC-CcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHHhcCC
Q 000755 1204 RVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS-DCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENKS 1281 (1300)
Q Consensus 1204 Rall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~-~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~~~~~ 1281 (1300)
|||..+|+++++|||||+|||+....+.+.+++..+ +.|+|+|||.+..+.+ +|||+.|++|+|+|.|+|++++.++.
T Consensus 149 RALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p~ 228 (240)
T COG1126 149 RALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPK 228 (240)
T ss_pred HHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCCC
Confidence 999999999999999999999999999999999764 7899999999999998 99999999999999999999998876
Q ss_pred Ch
Q 000755 1282 SS 1283 (1300)
Q Consensus 1282 ~~ 1283 (1300)
..
T Consensus 229 ~~ 230 (240)
T COG1126 229 SE 230 (240)
T ss_pred CH
Confidence 53
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-44 Score=452.51 Aligned_cols=358 Identities=16% Similarity=0.153 Sum_probs=284.6
Q ss_pred hhhhhHHHHHHHHHHhhhhhhHHHHHHHHhhchHHHHHhcchHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHH
Q 000755 891 EQYYIPSARELSRLVGVCKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFHIAGAMEWLCFRLDMLSSL 970 (1300)
Q Consensus 891 ~~~y~~~~r~l~rl~~~~~sp~~~~~~E~l~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~ 970 (1300)
-+++.+..+++.+......+.+.+.+.|.++|+++||+|+.++...+++.+..++..+..........++....+++...
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 335 (659)
T TIGR00954 256 LTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIVAKY 335 (659)
T ss_pred HHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34555566667777777788899999999999999999999999999988888887777777666666666666665432
Q ss_pred HHHHH--HHH-H-HHhc----CCcccHHHH-HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC-
Q 000755 971 TFAFS--LVL-L-ISIP----KGVIEPAIA-GLAVTY---GLNLNMLQAWVIWNLCNLENKIISVERILQYTCISSEPP- 1037 (1300)
Q Consensus 971 ~~~~~--~~~-~-~~~~----~g~~~~~~~-gl~l~~---~~~~~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~- 1037 (1300)
..... ++. . +... .|.++.|.. +..++| ...+..++..+...+.+++....+.+|+.++.+.+++..
T Consensus 336 ~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~ 415 (659)
T TIGR00954 336 TWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKS 415 (659)
T ss_pred HHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11111 111 1 1221 256776653 334554 455677888899999999999999999999986533210
Q ss_pred ------Cccc--cC-----CC------CCCCCCCceEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHH
Q 000755 1038 ------LVIE--ES-----RP------DCSWPTHGEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTL 1098 (1300)
Q Consensus 1038 ------~~~~--~~-----~~------~~~wp~~g~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTL 1098 (1300)
...+ +. .+ .......+.|+++||+++|+++ +++|+|+||+|++||++||+||||||||||
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~-~~il~~isl~i~~Ge~~~IvG~nGsGKSTL 494 (659)
T TIGR00954 416 GNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG-DVLIESLSFEVPSGNHLLICGPNGCGKSSL 494 (659)
T ss_pred ccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC-CeeeecceEEECCCCEEEEECCCCCCHHHH
Confidence 0000 00 00 0000134679999999999643 369999999999999999999999999999
Q ss_pred HHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEEEcCCCCCCcccHHHhcCCC--------CCCCHHHHHHHHHHcCC
Q 000755 1099 IQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPL--------EEYKDEEIWEALDKCQL 1170 (1300)
Q Consensus 1099 l~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~vpQ~~~lf~gTvr~Nl~~~--------~~~~d~~i~~~l~~~~l 1170 (1300)
+++|+|+++|++|+|.+|+ |++++|+||+|.+|++|+++|+... ...++++++++++.+++
T Consensus 495 l~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l 563 (659)
T TIGR00954 495 FRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQL 563 (659)
T ss_pred HHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCC
Confidence 9999999999999999864 5789999999999999999999643 23568889999999999
Q ss_pred cHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCCh
Q 000755 1171 GDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRI 1250 (1300)
Q Consensus 1171 ~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl 1250 (1300)
.+++.+ |.|+|+..+ .+.+||||||||++||||++++|+++||||||++||+++++.+.+.+++. ++|+|+||||+
T Consensus 564 ~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~--~~tvI~isH~~ 639 (659)
T TIGR00954 564 THILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF--GITLFSVSHRK 639 (659)
T ss_pred HHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEeCch
Confidence 998877 899999876 57799999999999999999999999999999999999999999999875 89999999999
Q ss_pred hhhhccCEEEEEeC
Q 000755 1251 TSVIDSDMVLLLSH 1264 (1300)
Q Consensus 1251 ~~i~~~D~v~vl~~ 1264 (1300)
+++..||+|++|+.
T Consensus 640 ~~~~~~d~il~l~~ 653 (659)
T TIGR00954 640 SLWKYHEYLLYMDG 653 (659)
T ss_pred HHHHhCCEEEEEeC
Confidence 99988999999974
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=403.52 Aligned_cols=225 Identities=26% Similarity=0.425 Sum_probs=196.2
Q ss_pred EEEEeeeeeeCCC---CCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCC---HHHH
Q 000755 1055 VDILNLQVRYAPH---LPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIG---LHDL 1128 (1300)
Q Consensus 1055 i~~~~v~~~y~~~---~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~---~~~l 1128 (1300)
|++++|++.|... ...+|+||||+|++||+.||||+||||||||++++.++-+|++|+|.+||.|+..++ ++.+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7999999999762 356899999999999999999999999999999999999999999999999988776 4556
Q ss_pred hcccEEEcCCCCCCc-ccHHHhcCC-C--CCCCHH----HHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHH
Q 000755 1129 RSRLSIIPQDPTMFE-GTVRNNLDP-L--EEYKDE----EIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLV 1200 (1300)
Q Consensus 1129 r~~i~~vpQ~~~lf~-gTvr~Nl~~-~--~~~~d~----~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl 1200 (1300)
|++||+|+|++.|++ .||.+|+.+ . ...+.+ ++.+.|+.+||.|...+.| .+|||||||||
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP-----------~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP-----------AQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc-----------hhcCcchhhHH
Confidence 789999999999997 599999964 2 223333 4567899999988766655 57899999999
Q ss_pred HHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc--CCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHH
Q 000755 1201 CLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF--SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLL 1277 (1300)
Q Consensus 1201 ~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~ 1277 (1300)
+|||||..+|+||++|||||+|||+|.+.|.+.|++.. -+-||++|||.++.+++ ||||.||++|+|+|.|+..+++
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 99999999999999999999999999999999998754 37899999999999999 9999999999999999999999
Q ss_pred hcCCCh-HHHHHHH
Q 000755 1278 ENKSSS-FAQLVAE 1290 (1300)
Q Consensus 1278 ~~~~~~-f~~l~~~ 1290 (1300)
.++... =++++.+
T Consensus 231 ~~Pk~~~t~~fi~~ 244 (339)
T COG1135 231 ANPKHAITQEFIGE 244 (339)
T ss_pred cCcchHHHHHHHHh
Confidence 887543 3444443
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-45 Score=421.67 Aligned_cols=264 Identities=25% Similarity=0.341 Sum_probs=221.6
Q ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCCCCCcceEEEEeEEEEecCC
Q 000755 550 IPLESGKILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIASFLCLDDLQSDVVEKHPRGSSETAIEIVDGNFAWDIS 629 (1300)
Q Consensus 550 ~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~~~~~~~~~~I~i~~~~fs~~~~ 629 (1300)
+++++..+|+.+++|+.+..|+..+|..... ..|+.+|+..++.+...... .......|+++|++|+|+.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~nls~~y~~- 92 (329)
T PRK14257 23 NELDAKAIYDEFQKLNKYQRAFAWLKLPKQK-------KAELKQFLNKKKTQVDLLKE--DFNHANVFEIRNFNFWYMN- 92 (329)
T ss_pred chhHHHHHHHHhhccccccchhhHHhccccc-------chhhhhcccccccccccccC--CCCcCceEEEEeeEEEecC-
Confidence 4678999999999999999998887765443 56899998766543211111 1123457999999999963
Q ss_pred CCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhcccc-----CCccEEEEcC---------------eEEEEecCC
Q 000755 630 SNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVP-----KISGTLKLCG---------------TKAYVAQSP 689 (1300)
Q Consensus 630 ~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~-----~~~G~i~~~g---------------~~ayv~Q~~ 689 (1300)
..+++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++| .++||||+|
T Consensus 93 ~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~ 172 (329)
T PRK14257 93 RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKP 172 (329)
T ss_pred CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCC
Confidence 34579999999999999999999999999999999999996 5799998754 479999999
Q ss_pred cCCCCCHHHHHhcCCCC---C-HH----HHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHHHHHccCCC
Q 000755 690 WIQSGNIEDNILFGKPM---D-RE----KYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDAD 761 (1300)
Q Consensus 690 ~l~~~Ti~eNI~fg~~~---~-~~----~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLARAly~~~~ 761 (1300)
|+|++|++|||.|+..+ + ++ .++++++.|++..++ ++.++++|.+|||||||||+||||++++|+
T Consensus 173 ~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l-------~~~~~~~~~~LSgGqkqRl~LARAl~~~p~ 245 (329)
T PRK14257 173 TPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEV-------KDDLDKAGNALSGGQQQRLCIARAIALEPE 245 (329)
T ss_pred ccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchh-------hhhhhCCcccCCHHHHHHHHHHHHHHhCCC
Confidence 99999999999987532 2 22 367778888876554 367899999999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHHHhcC
Q 000755 762 IYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDILNSG 831 (1300)
Q Consensus 762 illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 831 (1300)
|+||||||++||+++.+.+ .+++..+.+++|+|+|||+++++.. ||+|++|++|+|++.|+++++....
T Consensus 246 IlLLDEPts~LD~~~~~~i-~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~~~ 315 (329)
T PRK14257 246 VLLMDEPTSALDPIATAKI-EELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIHP 315 (329)
T ss_pred EEEEeCCcccCCHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCC
Confidence 9999999999999998885 5678877778999999999999887 9999999999999999999987643
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-44 Score=402.53 Aligned_cols=240 Identities=50% Similarity=0.817 Sum_probs=222.2
Q ss_pred CCceEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhc
Q 000755 1051 THGEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS 1130 (1300)
Q Consensus 1051 ~~g~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~ 1130 (1300)
..|.|+++|++++|+.....+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+|+
T Consensus 16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 35789999999999764346999999999999999999999999999999999999999999999999998888888899
Q ss_pred ccEEEcCCCCCCcccHHHhcCCCCCCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCC
Q 000755 1131 RLSIIPQDPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKS 1210 (1300)
Q Consensus 1131 ~i~~vpQ~~~lf~gTvr~Nl~~~~~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~ 1210 (1300)
+++|+||+|.+|++|+++|+.+.....+++++++++.+++.+.+..+|.|+++.+++.+.+||+|||||++||||++++|
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 175 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKS 175 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999865444566788899999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhccCEEEEEeCCEEEEecChhhHHhcCCChHHHHHHH
Q 000755 1211 KVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLVAE 1290 (1300)
Q Consensus 1211 ~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~~D~v~vl~~G~i~e~g~~~~l~~~~~~~f~~l~~~ 1290 (1300)
++|||||||++||+.+.+.+.+.+++..+++|+|++||+++.+..||||++|++|++++.|+++++.+.+++.|+.++.+
T Consensus 176 ~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 255 (257)
T cd03288 176 SILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLVRT 255 (257)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHHHhc
Confidence 99999999999999999999999998766899999999999998899999999999999999999998777888887754
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-45 Score=385.10 Aligned_cols=219 Identities=27% Similarity=0.469 Sum_probs=197.9
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEE
Q 000755 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSI 1134 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~ 1134 (1300)
|+|+||+++|.+. .+++|+||+|++||.+.++|||||||||++++|.|+++|++|+|+|||.++++++..+||++|||
T Consensus 2 I~~~nvsk~y~~~--~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 2 IEFENVSKRYGNK--KAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred ceeeeeehhcCCc--eeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence 7999999999853 59999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCCcc-cHHHhcCCCCC---CC----HHHHHHHHHHcCCcH--HHHhhcCCCccccccCCCCCChhHHHHHHHHH
Q 000755 1135 IPQDPTMFEG-TVRNNLDPLEE---YK----DEEIWEALDKCQLGD--EVRNKEGKLDSRVTENGENWSMGQRQLVCLGR 1204 (1300)
Q Consensus 1135 vpQ~~~lf~g-Tvr~Nl~~~~~---~~----d~~i~~~l~~~~l~~--~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LAR 1204 (1300)
|-|..-||+. ||.+|+....+ .+ ++++.+.|+.++|.. +..+.| ..|||||+||+.+||
T Consensus 80 viQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-----------~eLSGGQQQRVGv~R 148 (309)
T COG1125 80 VIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYP-----------HELSGGQQQRVGVAR 148 (309)
T ss_pred hhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-----------hhcCcchhhHHHHHH
Confidence 9999999976 99999964322 22 445778899999963 555655 467999999999999
Q ss_pred HHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHHhcCC
Q 000755 1205 VLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENKS 1281 (1300)
Q Consensus 1205 all~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~~~~~ 1281 (1300)
||..+|+|++||||+++|||-++..+|+-+.+..+ ++|+|+||||+++... +|||.+|++|+|+.+|+|++++.++.
T Consensus 149 ALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pa 228 (309)
T COG1125 149 ALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPA 228 (309)
T ss_pred HHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCcc
Confidence 99999999999999999999999999999887543 7999999999999987 99999999999999999999999988
Q ss_pred ChHHH
Q 000755 1282 SSFAQ 1286 (1300)
Q Consensus 1282 ~~f~~ 1286 (1300)
..|-+
T Consensus 229 n~FV~ 233 (309)
T COG1125 229 NDFVE 233 (309)
T ss_pred HHHHH
Confidence 77743
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=375.80 Aligned_cols=220 Identities=26% Similarity=0.456 Sum_probs=199.7
Q ss_pred ceEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCc-----ceEEECCeecCC--CCH
Q 000755 1053 GEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTA-----GEIVIDGINISS--IGL 1125 (1300)
Q Consensus 1053 g~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~-----G~I~idg~di~~--i~~ 1125 (1300)
..++++||++.|+.. .+|+|||++|++++++|++||||||||||++++.|+.+... |+|.++|+||.+ ++.
T Consensus 6 ~~~~~~~l~~yYg~~--~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 6 PAIEVRDLNLYYGDK--HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred ceeEecceeEEECch--hhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 468999999999865 59999999999999999999999999999999999999876 999999999976 578
Q ss_pred HHHhcccEEEcCCCCCCcccHHHhcCCCC---C----CCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHH
Q 000755 1126 HDLRSRLSIIPQDPTMFEGTVRNNLDPLE---E----YKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQ 1198 (1300)
Q Consensus 1126 ~~lr~~i~~vpQ~~~lf~gTvr~Nl~~~~---~----~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQ 1198 (1300)
-++|+++|+|+|.|.-|+.||+||+.+.. . .-|+-++++|+++.||+.+... +.+.+..|||||+|
T Consensus 84 ~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDr-------L~~sa~~LSGGQQQ 156 (253)
T COG1117 84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDR-------LHKSALGLSGGQQQ 156 (253)
T ss_pred HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHH-------hhCCccCCChhHHH
Confidence 89999999999999999999999997542 1 1245578899999999998763 34567789999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHH
Q 000755 1199 LVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLL 1277 (1300)
Q Consensus 1199 rl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~ 1277 (1300)
||||||||.-+|+||+||||||+|||.+...|.+.|.++.++-||++|||.+.-... +|+..++..|+++|+|+.++++
T Consensus 157 RLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF 236 (253)
T COG1117 157 RLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIF 236 (253)
T ss_pred HHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhh
Confidence 999999999999999999999999999999999999999888999999999999988 9999999999999999999999
Q ss_pred hcCC
Q 000755 1278 ENKS 1281 (1300)
Q Consensus 1278 ~~~~ 1281 (1300)
.++.
T Consensus 237 ~~P~ 240 (253)
T COG1117 237 TNPK 240 (253)
T ss_pred cCcc
Confidence 8764
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=393.89 Aligned_cols=234 Identities=29% Similarity=0.495 Sum_probs=212.8
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEE
Q 000755 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSI 1134 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~ 1134 (1300)
|+++|++++|+...+++|+|+||++++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+|++++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 57899999997544569999999999999999999999999999999999999999999999999988887888899999
Q ss_pred EcCCCCCCcccHHHhcCCCC-CCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCEE
Q 000755 1135 IPQDPTMFEGTVRNNLDPLE-EYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVL 1213 (1300)
Q Consensus 1135 vpQ~~~lf~gTvr~Nl~~~~-~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~~iL 1213 (1300)
+||++.+|+.|+++|+.... ....+++.+.++..++.+.+..++.++++.....+.+||||||||++||||++++|++|
T Consensus 81 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 160 (237)
T cd03252 81 VLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRIL 160 (237)
T ss_pred EcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEE
Confidence 99999999899999997543 24456677788888999999999889999888899999999999999999999999999
Q ss_pred EEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhccCEEEEEeCCEEEEecChhhHHhcCCChHHHHHH
Q 000755 1214 VLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLVA 1289 (1300)
Q Consensus 1214 lLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~~D~v~vl~~G~i~e~g~~~~l~~~~~~~f~~l~~ 1289 (1300)
||||||++||+.+.+.+.+.|++..+++|||++||+++.+..||+|++|++|++++.|++++++++ .+.|+.+++
T Consensus 161 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~~~ 235 (237)
T cd03252 161 IFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE-NGLYAYLYQ 235 (237)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhc-cChHHHHHh
Confidence 999999999999999999999987778999999999999977999999999999999999999875 567776654
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-43 Score=387.05 Aligned_cols=221 Identities=59% Similarity=1.000 Sum_probs=207.2
Q ss_pred ceEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhccc
Q 000755 1053 GEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRL 1132 (1300)
Q Consensus 1053 g~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i 1132 (1300)
|.++++|++++|+....++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred CcEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 46899999999975444699999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEcCCCCCCcccHHHhcCCCCCCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCE
Q 000755 1133 SIIPQDPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKV 1212 (1300)
Q Consensus 1133 ~~vpQ~~~lf~gTvr~Nl~~~~~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~~i 1212 (1300)
+|+||++.+|++|+++|+.+......+++.++++.+++.+.+..++.|+++...+.+.+||+|||||++|||||+++|++
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 160 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI 160 (221)
T ss_pred EEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987666677889999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhccCEEEEEeCCEEEEecCh
Q 000755 1213 LVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSP 1273 (1300)
Q Consensus 1213 LlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~~D~v~vl~~G~i~e~g~~ 1273 (1300)
+||||||++||+.+.+.+.+.|++..++.|||++||+++.+..||++++|++|++++.|++
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~ 221 (221)
T cd03244 161 LVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDSP 221 (221)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCCC
Confidence 9999999999999999999999987667899999999999988999999999999988763
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-43 Score=387.64 Aligned_cols=213 Identities=31% Similarity=0.470 Sum_probs=189.8
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccE
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLS 1133 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~ 1133 (1300)
.++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|.+|+|++||.++.+++.+++.++++
T Consensus 2 ~L~~~~ls~~y~~--~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia 79 (258)
T COG1120 2 MLEVENLSFGYGG--KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLA 79 (258)
T ss_pred eeEEEEEEEEECC--eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEE
Confidence 4789999999985 46999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCC-CcccHHHhcCCC--------CCCC--HH-HHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHH
Q 000755 1134 IIPQDPTM-FEGTVRNNLDPL--------EEYK--DE-EIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVC 1201 (1300)
Q Consensus 1134 ~vpQ~~~l-f~gTvr~Nl~~~--------~~~~--d~-~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~ 1201 (1300)
||||++.. |.-||+|-+... ...+ |+ .+.++|+.+++.++..+. -..||||||||+.
T Consensus 80 ~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~-----------~~~LSGGerQrv~ 148 (258)
T COG1120 80 YVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRP-----------VDELSGGERQRVL 148 (258)
T ss_pred EeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCc-----------ccccChhHHHHHH
Confidence 99999754 455998876422 2222 33 477889999998875543 2468999999999
Q ss_pred HHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc--CCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHHh
Q 000755 1202 LGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF--SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLE 1278 (1300)
Q Consensus 1202 LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~~ 1278 (1300)
|||||.++|+||+|||||++||....-.+++.+++.. ++.|||++.||++.... ||++++|++|+++..|+|++++.
T Consensus 149 iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT 228 (258)
T COG1120 149 IARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLT 228 (258)
T ss_pred HHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcC
Confidence 9999999999999999999999999999999999876 36999999999999876 99999999999999999999986
Q ss_pred c
Q 000755 1279 N 1279 (1300)
Q Consensus 1279 ~ 1279 (1300)
.
T Consensus 229 ~ 229 (258)
T COG1120 229 E 229 (258)
T ss_pred H
Confidence 4
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=366.73 Aligned_cols=225 Identities=27% Similarity=0.456 Sum_probs=198.5
Q ss_pred CceEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHH---H
Q 000755 1052 HGEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHD---L 1128 (1300)
Q Consensus 1052 ~g~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~---l 1128 (1300)
...|++++|+++|+++ .|++||||+|++||++||+|+||||||||++++.|+++|++|+|.++|.|+..++.++ +
T Consensus 6 ~~~I~vr~v~~~fG~~--~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~i 83 (263)
T COG1127 6 EPLIEVRGVTKSFGDR--VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEI 83 (263)
T ss_pred cceEEEeeeeeecCCE--EEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHH
Confidence 3469999999999865 5999999999999999999999999999999999999999999999999999988654 6
Q ss_pred hcccEEEcCCCCCCcc-cHHHhcCC-CC---CCCHHHHHH----HHHHcCCcHH-HHhhcCCCccccccCCCCCChhHHH
Q 000755 1129 RSRLSIIPQDPTMFEG-TVRNNLDP-LE---EYKDEEIWE----ALDKCQLGDE-VRNKEGKLDSRVTENGENWSMGQRQ 1198 (1300)
Q Consensus 1129 r~~i~~vpQ~~~lf~g-Tvr~Nl~~-~~---~~~d~~i~~----~l~~~~l~~~-i~~~~~gLdt~v~e~G~~LSgGqrQ 1198 (1300)
|+++|+++|...||+. ||+||+.+ .. +.+++++.+ .|+.+||... ....| +.||||++.
T Consensus 84 r~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sELSGGM~K 152 (263)
T COG1127 84 RKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SELSGGMRK 152 (263)
T ss_pred HhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hhhcchHHH
Confidence 8999999999999987 99999974 33 345555544 5788888776 33334 568999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhh
Q 000755 1199 LVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTK 1275 (1300)
Q Consensus 1199 rl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~ 1275 (1300)
|++||||+.-+|+|+++||||+||||-+...+-+.|++..+ +.|+++||||++++.. ||||+++.+|+|+.+|++++
T Consensus 153 RvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~e 232 (263)
T COG1127 153 RVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEE 232 (263)
T ss_pred HHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHH
Confidence 99999999999999999999999999999999999988653 7899999999999998 89999999999999999999
Q ss_pred HHhcCCChHHHHHH
Q 000755 1276 LLENKSSSFAQLVA 1289 (1300)
Q Consensus 1276 l~~~~~~~f~~l~~ 1289 (1300)
+.+.++...++++.
T Consensus 233 l~~sd~P~v~qf~~ 246 (263)
T COG1127 233 LLASDDPWVRQFFN 246 (263)
T ss_pred HHhCCCHHHHHHhc
Confidence 99887766666554
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-42 Score=383.29 Aligned_cols=231 Identities=32% Similarity=0.518 Sum_probs=209.4
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEE
Q 000755 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSI 1134 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~ 1134 (1300)
|+++|++++|++...++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++...+...+|++++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 47899999997543359999999999999999999999999999999999999999999999999988777788889999
Q ss_pred EcCCCCCCcccHHHhcCCCC-CCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCEE
Q 000755 1135 IPQDPTMFEGTVRNNLDPLE-EYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVL 1213 (1300)
Q Consensus 1135 vpQ~~~lf~gTvr~Nl~~~~-~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~~iL 1213 (1300)
+||++.+|+.|+++|+.... ....+++.+.++..++.+.+..++.++++..+..+.+||+|||||++|||||+++|+++
T Consensus 81 ~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 160 (234)
T cd03251 81 VSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPIL 160 (234)
T ss_pred eCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999997542 34556677788888999999999889999888899999999999999999999999999
Q ss_pred EEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhccCEEEEEeCCEEEEecChhhHHhcCCChHHH
Q 000755 1214 VLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQ 1286 (1300)
Q Consensus 1214 lLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~~D~v~vl~~G~i~e~g~~~~l~~~~~~~f~~ 1286 (1300)
||||||++||+.+.+.+.+.|++..++.|||++||+++.+..||+|++|++|++++.|+++++.++ .+.|+.
T Consensus 161 lLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~ 232 (234)
T cd03251 161 ILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ-GGVYAK 232 (234)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHc-Ccchhh
Confidence 999999999999999999999988778999999999999988999999999999999999999864 444543
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=379.28 Aligned_cols=209 Identities=29% Similarity=0.439 Sum_probs=182.6
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccE
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLS 1133 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~ 1133 (1300)
.|+++|++++|+.. + ||+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++..... +.+||
T Consensus 4 ~i~v~nl~v~y~~~-~-vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~Ig 78 (254)
T COG1121 4 MIEVENLTVSYGNR-P-VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRIG 78 (254)
T ss_pred EEEEeeeEEEECCE-e-eeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeEE
Confidence 69999999999865 4 9999999999999999999999999999999999999999999999987754321 46899
Q ss_pred EEcCCCC---CCcccHHHhcCCCC-----------CCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHH
Q 000755 1134 IIPQDPT---MFEGTVRNNLDPLE-----------EYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQL 1199 (1300)
Q Consensus 1134 ~vpQ~~~---lf~gTvr~Nl~~~~-----------~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQr 1199 (1300)
||||... -|+-||+|-+.... ..+.+++.++|+++++.++..+. + ..|||||+||
T Consensus 79 YVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~-------i----~~LSGGQ~QR 147 (254)
T COG1121 79 YVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQ-------I----GELSGGQKQR 147 (254)
T ss_pred EcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCc-------c----cccCcHHHHH
Confidence 9999653 47889999875421 11247799999999998875543 2 4589999999
Q ss_pred HHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC-CcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHH
Q 000755 1200 VCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS-DCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLL 1277 (1300)
Q Consensus 1200 l~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~-~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~ 1277 (1300)
+.|||||+++|++|+|||||+|+|+.++..|.+.|++..+ +|||++|+||++.+.+ +|+|+.| ++++...|+|++.+
T Consensus 148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~L-n~~~~~~G~~~~~~ 226 (254)
T COG1121 148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPEEVL 226 (254)
T ss_pred HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEE-cCeeEeccChhhcc
Confidence 9999999999999999999999999999999999998764 8999999999999988 9999999 56678899999998
Q ss_pred hc
Q 000755 1278 EN 1279 (1300)
Q Consensus 1278 ~~ 1279 (1300)
+.
T Consensus 227 ~~ 228 (254)
T COG1121 227 TE 228 (254)
T ss_pred CH
Confidence 64
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=362.52 Aligned_cols=203 Identities=32% Similarity=0.444 Sum_probs=177.3
Q ss_pred eEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe--------------
Q 000755 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 681 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-------------- 681 (1300)
-|+++|++.+|. +..+|+|||++|++||.++|||||||||||||+||.|+.+|++|+|.++|.
T Consensus 2 mi~i~~l~K~fg---~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFG---DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeC---CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 489999999996 467999999999999999999999999999999999999999999999993
Q ss_pred EEEEecCCcCCC-CCHHHHHhcCCC----CC----HHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHH
Q 000755 682 KAYVAQSPWIQS-GNIEDNILFGKP----MD----REKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQI 752 (1300)
Q Consensus 682 ~ayv~Q~~~l~~-~Ti~eNI~fg~~----~~----~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaL 752 (1300)
+|+|+|+..+|. -|+.|||..+.- .+ +++-.+.++..+|.+..+..| ..|||||||||||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----------~qLSGGQqQRVAI 147 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP-----------AQLSGGQQQRVAI 147 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc-----------cccCcHHHHHHHH
Confidence 579999999985 699999998731 22 334456677888887777666 5799999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHHHhcC
Q 000755 753 ARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDILNSG 831 (1300)
Q Consensus 753 ARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 831 (1300)
||||.-+|+++|+|||||||||+....+.+-...-...|.|.|+|||.+.|... ||||+.|++|+|++.|+++++..+.
T Consensus 148 ARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p 227 (240)
T COG1126 148 ARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNP 227 (240)
T ss_pred HHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCC
Confidence 999999999999999999999999998876433333468899999999999887 9999999999999999999998764
Q ss_pred c
Q 000755 832 T 832 (1300)
Q Consensus 832 ~ 832 (1300)
.
T Consensus 228 ~ 228 (240)
T COG1126 228 K 228 (240)
T ss_pred C
Confidence 3
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-42 Score=379.57 Aligned_cols=226 Identities=37% Similarity=0.596 Sum_probs=207.5
Q ss_pred ceEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhccc
Q 000755 1053 GEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRL 1132 (1300)
Q Consensus 1053 g~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i 1132 (1300)
|.|+++|++++|+.. +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~~-~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 1 GEIEFENVNFSYDEK-KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred CeEEEEEEEEecCCC-CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 468999999999642 3599999999999999999999999999999999999999999999999999887778888999
Q ss_pred EEEcCCCCCCcccHHHhcCCCC-CCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCC
Q 000755 1133 SIIPQDPTMFEGTVRNNLDPLE-EYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSK 1211 (1300)
Q Consensus 1133 ~~vpQ~~~lf~gTvr~Nl~~~~-~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~~ 1211 (1300)
+|+||++.+|++|+++|+.... ...++++.++++.+++.+.+..+|.|+++.++....+||+|||||++|||||+++|+
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ 159 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999997543 345567888899999999999999899999989999999999999999999999999
Q ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhccCEEEEEeCCEEEEecChhhHHhc
Q 000755 1212 VLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLEN 1279 (1300)
Q Consensus 1212 iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~~D~v~vl~~G~i~e~g~~~~l~~~ 1279 (1300)
+|||||||++||+.+.+.+.+.|++..+++|||++||+++.+..||+|++|++|++++.|+++++.++
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 160 ILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 99999999999999999999999987668999999999999988999999999999999998888754
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=379.54 Aligned_cols=233 Identities=35% Similarity=0.576 Sum_probs=212.0
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEE
Q 000755 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSI 1134 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~ 1134 (1300)
++++|++++|+++ ..+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+|+.++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 79 (236)
T cd03253 1 IEFENVTFAYDPG-RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGV 79 (236)
T ss_pred CEEEEEEEEeCCC-CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 4789999999643 358999999999999999999999999999999999999999999999999988888888889999
Q ss_pred EcCCCCCCcccHHHhcCCC-CCCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCEE
Q 000755 1135 IPQDPTMFEGTVRNNLDPL-EEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVL 1213 (1300)
Q Consensus 1135 vpQ~~~lf~gTvr~Nl~~~-~~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~~iL 1213 (1300)
+||++.+|++|+++|+... ...+++++.++++.+++.+.+..++.++++.+...+.+||+|||||++|||||+++|++|
T Consensus 80 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ll 159 (236)
T cd03253 80 VPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPIL 159 (236)
T ss_pred ECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999999754 234566788889999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhccCEEEEEeCCEEEEecChhhHHhcCCChHHHHHH
Q 000755 1214 VLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLVA 1289 (1300)
Q Consensus 1214 lLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~~D~v~vl~~G~i~e~g~~~~l~~~~~~~f~~l~~ 1289 (1300)
||||||++||+.+.+.+.+.|++..++.|||++||+++.+..||++++|++|++++.|+++++.++ .+.|+.++.
T Consensus 160 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~-~~~~~~~~~ 234 (236)
T cd03253 160 LLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK-GGLYAEMWK 234 (236)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc-ccHHHHHHh
Confidence 999999999999999999999987667899999999999988999999999999999999998864 566666554
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-42 Score=387.78 Aligned_cols=222 Identities=27% Similarity=0.356 Sum_probs=201.6
Q ss_pred eEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC-------------eE
Q 000755 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-------------TK 682 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g-------------~~ 682 (1300)
.|+++|++++|+.+ ..++|+|+||+|++||+++|+|+||||||||+++|.|+++ .+|+|.++| .+
T Consensus 2 ~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 2 QMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred eEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 58999999999632 4579999999999999999999999999999999999998 799999988 36
Q ss_pred EEEecCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCE
Q 000755 683 AYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADI 762 (1300)
Q Consensus 683 ayv~Q~~~l~~~Ti~eNI~fg~~~~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLARAly~~~~i 762 (1300)
+||||+|++|++|+++|+....++++++++++++.+++...+..+|.+++|.++|+|.+||||||||++||||++++|+|
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i 159 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 159 (275)
T ss_pred EEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999974445677889999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHhcCchHHHHHHH
Q 000755 763 YLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSGTDFMVLVGA 840 (1300)
Q Consensus 763 llLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~l~~~ 840 (1300)
+||||||++||+++.+.+. +.+....+++|+|+|||+++++..||+|++|++|++++.|+++++++....|..++..
T Consensus 160 lllDEpts~LD~~~~~~l~-~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~ 236 (275)
T cd03289 160 LLLDEPSAHLDPITYQVIR-KTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAISP 236 (275)
T ss_pred EEEECccccCCHHHHHHHH-HHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHHHHHHhh
Confidence 9999999999999988775 4555555689999999999998889999999999999999999999977666666543
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-42 Score=372.85 Aligned_cols=207 Identities=60% Similarity=1.006 Sum_probs=186.9
Q ss_pred CCCCceEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHH
Q 000755 1049 WPTHGEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDL 1128 (1300)
Q Consensus 1049 wp~~g~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~l 1128 (1300)
||..+.++++|++++|+....++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+..++
T Consensus 1 ~~~~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 80 (207)
T cd03369 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDL 80 (207)
T ss_pred CCCCCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHH
Confidence 88899999999999997543469999999999999999999999999999999999999999999999999988888888
Q ss_pred hcccEEEcCCCCCCcccHHHhcCCCCCCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHcc
Q 000755 1129 RSRLSIIPQDPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLK 1208 (1300)
Q Consensus 1129 r~~i~~vpQ~~~lf~gTvr~Nl~~~~~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~ 1208 (1300)
|++++|+||+|.+|++|+++|+.......++++.++++ +......||+||+||++||||++.
T Consensus 81 ~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~ 142 (207)
T cd03369 81 RSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLK 142 (207)
T ss_pred HhhEEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhh
Confidence 89999999999999999999997655455555544443 234567899999999999999999
Q ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhccCEEEEEeCCEEEEecCh
Q 000755 1209 KSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSP 1273 (1300)
Q Consensus 1209 ~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~~D~v~vl~~G~i~e~g~~ 1273 (1300)
+|+++||||||++||+.+...+.+.|++..+++|+|++||+++.+..||++++|++|++++.|+|
T Consensus 143 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 143 RPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 99999999999999999999999999987678999999999999988999999999999998864
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-42 Score=398.21 Aligned_cols=219 Identities=26% Similarity=0.424 Sum_probs=191.3
Q ss_pred EEEEeeeeeeCCC--CCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHH---Hh
Q 000755 1055 VDILNLQVRYAPH--LPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHD---LR 1129 (1300)
Q Consensus 1055 i~~~~v~~~y~~~--~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~---lr 1129 (1300)
|+++|++++|+.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++..+ .|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 7899999999632 246999999999999999999999999999999999999999999999999998877654 47
Q ss_pred cccEEEcCCCCCCc-ccHHHhcCCC---CCCC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHH
Q 000755 1130 SRLSIIPQDPTMFE-GTVRNNLDPL---EEYK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVC 1201 (1300)
Q Consensus 1130 ~~i~~vpQ~~~lf~-gTvr~Nl~~~---~~~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~ 1201 (1300)
++|+|+||++.+|. .|+++|+.+. ...+ ++++.++++.+++.+...+.| ..||||||||++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~-----------~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYP-----------SNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHH
Confidence 79999999999986 5999999632 1122 234678899999877654433 568999999999
Q ss_pred HHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHHh
Q 000755 1202 LGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLE 1278 (1300)
Q Consensus 1202 LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~~ 1278 (1300)
|||||+.+|++|+|||||++||+.+...+.+.|++..+ +.|||+|||+++.+.. ||+|++|++|++++.|++++++.
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 99999999999999999999999999999999998653 6899999999999987 99999999999999999999987
Q ss_pred cCCChH
Q 000755 1279 NKSSSF 1284 (1300)
Q Consensus 1279 ~~~~~f 1284 (1300)
++...+
T Consensus 231 ~p~~~~ 236 (343)
T TIGR02314 231 HPKTPL 236 (343)
T ss_pred CCCcHH
Confidence 665444
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=374.15 Aligned_cols=219 Identities=34% Similarity=0.527 Sum_probs=199.2
Q ss_pred ceEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhccc
Q 000755 1053 GEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRL 1132 (1300)
Q Consensus 1053 g~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i 1132 (1300)
|.++++|++++|+....++|+|+||+|++||++||+||||||||||+++|+|+.+|++|+|.++|.++...+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred CeEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 46899999999975334599999999999999999999999999999999999999999999999998877777778899
Q ss_pred EEEcCCCCCCcccHHHhcCCCC-CCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCC
Q 000755 1133 SIIPQDPTMFEGTVRNNLDPLE-EYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSK 1211 (1300)
Q Consensus 1133 ~~vpQ~~~lf~gTvr~Nl~~~~-~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~~ 1211 (1300)
+|+||++.+|..|+++|+.... ....+++.++++.+++.+.+...|.++++.+.+...+||||||||++||||++.+|+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 9999999998889999997542 234567788899999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhccCEEEEEeCCEEEEec
Q 000755 1212 VLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYD 1271 (1300)
Q Consensus 1212 iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~~D~v~vl~~G~i~e~g 1271 (1300)
+|||||||++||+.+...+.+.|++..+++|||++||+++.+..||+|++|++|++++.|
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 999999999999999999999999876668999999999987669999999999998754
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=377.93 Aligned_cols=233 Identities=34% Similarity=0.611 Sum_probs=208.5
Q ss_pred EEEEeeeeeeCCC-CCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccE
Q 000755 1055 VDILNLQVRYAPH-LPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLS 1133 (1300)
Q Consensus 1055 i~~~~v~~~y~~~-~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~ 1133 (1300)
++++|++++|++. ..++|+|+||++++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+....+++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 4789999999653 246999999999999999999999999999999999999999999999999998777777788899
Q ss_pred EEcCCCCCCcccHHHhcCCC-CCCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCE
Q 000755 1134 IIPQDPTMFEGTVRNNLDPL-EEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKV 1212 (1300)
Q Consensus 1134 ~vpQ~~~lf~gTvr~Nl~~~-~~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~~i 1212 (1300)
|+||++.+|+.|+++|+... .....+++.+.++..++.+++..+|.++++.......+||||||||++|||||+.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999989999999754 23345667778888899898899999999999889999999999999999999999999
Q ss_pred EEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhccCEEEEEeCCEEEEecChhhHHhcCCChHHHHH
Q 000755 1213 LVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLV 1288 (1300)
Q Consensus 1213 LlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~~D~v~vl~~G~i~e~g~~~~l~~~~~~~f~~l~ 1288 (1300)
|||||||++||+.+.+.+.+.|++..+++|||++||+++.+..||+|++|++|++++.|+++++.+. .+..++++
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~~ 235 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQ-KGVYAKLV 235 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhc-ChhHHHHh
Confidence 9999999999999999999999987667899999999999988999999999999999999988764 34444443
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=387.43 Aligned_cols=217 Identities=26% Similarity=0.425 Sum_probs=197.0
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccE
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLS 1133 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~ 1133 (1300)
.|+++||+++|++.. +++|+|++|+.||.++|+||||||||||+++|+|+.+|++|+|.|||.|++++++++ ++|+
T Consensus 3 ~i~l~~v~K~yg~~~--~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~ia 78 (338)
T COG3839 3 ELELKNVRKSFGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGIA 78 (338)
T ss_pred EEEEeeeEEEcCCce--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCEE
Confidence 689999999998753 899999999999999999999999999999999999999999999999999998876 6899
Q ss_pred EEcCCCCCCcc-cHHHhcCCCCC-------CCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHH
Q 000755 1134 IIPQDPTMFEG-TVRNNLDPLEE-------YKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRV 1205 (1300)
Q Consensus 1134 ~vpQ~~~lf~g-Tvr~Nl~~~~~-------~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARa 1205 (1300)
+|+|+..||+. ||++|+.+.-. -.++++.++++.+++.+.++++|. .||||||||++||||
T Consensus 79 mVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~-----------~LSGGQrQRVAlaRA 147 (338)
T COG3839 79 MVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPL-----------QLSGGQRQRVALARA 147 (338)
T ss_pred EEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcc-----------cCChhhHHHHHHHHH
Confidence 99999999976 99999975321 225667889999999888888775 569999999999999
Q ss_pred HccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHHhcCCC
Q 000755 1206 LLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENKSS 1282 (1300)
Q Consensus 1206 ll~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~~~~~~ 1282 (1300)
|.++|++++||||.|+||...+..+...|++..+ +.|+|.||||..+++. +|||.||++|+|.+.|+|.++.+++..
T Consensus 148 lVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~n 227 (338)
T COG3839 148 LVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPAN 227 (338)
T ss_pred HhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCccc
Confidence 9999999999999999999999999888887543 5899999999999988 999999999999999999999998887
Q ss_pred hHH
Q 000755 1283 SFA 1285 (1300)
Q Consensus 1283 ~f~ 1285 (1300)
.|-
T Consensus 228 ~fV 230 (338)
T COG3839 228 LFV 230 (338)
T ss_pred hhh
Confidence 764
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=361.60 Aligned_cols=226 Identities=28% Similarity=0.413 Sum_probs=190.4
Q ss_pred eEEEEeeeeeeCCCC--CcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCC-HHHHhc
Q 000755 1054 EVDILNLQVRYAPHL--PLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIG-LHDLRS 1130 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~--~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~-~~~lr~ 1130 (1300)
.++++|+++.|+.+. .++|+||||+|.+||.+||||+||||||||.++|+|+.+|++|+|.+||.++.... .+..++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 589999999997652 24999999999999999999999999999999999999999999999998775543 335677
Q ss_pred ccEEEcCCCCC-C-c-ccHHHhcC-CCCC----CCHHHHHHHHHHcCCcHHH-HhhcCCCccccccCCCCCChhHHHHHH
Q 000755 1131 RLSIIPQDPTM-F-E-GTVRNNLD-PLEE----YKDEEIWEALDKCQLGDEV-RNKEGKLDSRVTENGENWSMGQRQLVC 1201 (1300)
Q Consensus 1131 ~i~~vpQ~~~l-f-~-gTvr~Nl~-~~~~----~~d~~i~~~l~~~~l~~~i-~~~~~gLdt~v~e~G~~LSgGqrQrl~ 1201 (1300)
.+.+|+|||.- + + -||++-|. |... ...++++++|+.+||.+.. .+.| ..||||||||+|
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P-----------~eLSGGQ~QRia 151 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRP-----------HELSGGQRQRIA 151 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCc-----------hhcChhHHHHHH
Confidence 89999999962 2 2 37777763 3221 2345699999999996543 4444 457999999999
Q ss_pred HHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHHh
Q 000755 1202 LGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLE 1278 (1300)
Q Consensus 1202 LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~~ 1278 (1300)
|||||.-+|++||||||||+||....+.|.+.+.+..+ +-|.|+|||++..+.. ||||+||++|+++|.++.+++..
T Consensus 152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 99999999999999999999999999999999988765 4599999999999998 99999999999999999999998
Q ss_pred cCCChHHHHHHH
Q 000755 1279 NKSSSFAQLVAE 1290 (1300)
Q Consensus 1279 ~~~~~f~~l~~~ 1290 (1300)
.+...|.+...+
T Consensus 232 ~~~h~ytr~Ll~ 243 (252)
T COG1124 232 HPSHPYTRELLE 243 (252)
T ss_pred CCccHHHHHHHH
Confidence 755566554443
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=375.23 Aligned_cols=211 Identities=29% Similarity=0.521 Sum_probs=184.3
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCC-----CCCcceEEECCeecCCCC--HHH
Q 000755 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIV-----EPTAGEIVIDGINISSIG--LHD 1127 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~-----~p~~G~I~idg~di~~i~--~~~ 1127 (1300)
|+++|++++|+.. ++|+|+||+|++||++||+|+||||||||+++|+|++ +|++|+|.++|.++...+ ...
T Consensus 1 i~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (227)
T cd03260 1 IELRDLNVYYGDK--HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLE 78 (227)
T ss_pred CEEEEEEEEcCCc--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHH
Confidence 5789999999753 5999999999999999999999999999999999999 999999999999998776 566
Q ss_pred HhcccEEEcCCCCCCcccHHHhcCCCC---CC-----CHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHH
Q 000755 1128 LRSRLSIIPQDPTMFEGTVRNNLDPLE---EY-----KDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQL 1199 (1300)
Q Consensus 1128 lr~~i~~vpQ~~~lf~gTvr~Nl~~~~---~~-----~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQr 1199 (1300)
+|++++|+||++.+|..|+++|+.+.. .. .++++.++++.+++.+...+.+. +.+||||||||
T Consensus 79 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~qr 149 (227)
T cd03260 79 LRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQR 149 (227)
T ss_pred HHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHHH
Confidence 788999999999988779999986421 11 13456778888888765443221 46799999999
Q ss_pred HHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhH
Q 000755 1200 VCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKL 1276 (1300)
Q Consensus 1200 l~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l 1276 (1300)
++|||||+++|++|||||||++||+.+.+.+.+.|++..+++|||++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 150 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 150 LCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 99999999999999999999999999999999999987655899999999999887 999999999999999988764
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=375.97 Aligned_cols=212 Identities=27% Similarity=0.425 Sum_probs=184.6
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCH---HHHhcc
Q 000755 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGL---HDLRSR 1131 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~---~~lr~~ 1131 (1300)
|+++|++++|+. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+. ..+|+.
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 78 (235)
T cd03261 1 IELRGLTKSFGG--RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRR 78 (235)
T ss_pred CeEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcc
Confidence 478999999964 359999999999999999999999999999999999999999999999999887664 457888
Q ss_pred cEEEcCCCCCCcc-cHHHhcCCC----CCCC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHH
Q 000755 1132 LSIIPQDPTMFEG-TVRNNLDPL----EEYK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCL 1202 (1300)
Q Consensus 1132 i~~vpQ~~~lf~g-Tvr~Nl~~~----~~~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~L 1202 (1300)
++|+||++.+|.. |+++|+... ...+ ++++.++++.+++.+...+. ..+||||||||++|
T Consensus 79 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv~i 147 (235)
T cd03261 79 MGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLY-----------PAELSGGMKKRVAL 147 (235)
T ss_pred eEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHHHH
Confidence 9999999999886 999998642 1122 23456778888876544332 35789999999999
Q ss_pred HHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHHhc
Q 000755 1203 GRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLEN 1279 (1300)
Q Consensus 1203 ARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~~~ 1279 (1300)
||||+++|+||||||||++||+.+.+.+.+.|++..+ ++|||+|||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 148 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 227 (235)
T cd03261 148 ARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRAS 227 (235)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcCC
Confidence 9999999999999999999999999999999998653 6899999999999987 999999999999999999998754
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=370.79 Aligned_cols=215 Identities=28% Similarity=0.459 Sum_probs=194.4
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecC-CCCHHHHhccc
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINIS-SIGLHDLRSRL 1132 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~-~i~~~~lr~~i 1132 (1300)
.++++|++++|+++ .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.+++ ..+...+|+++
T Consensus 3 ~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 3 MIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred eEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 58899999999877 67999999999999999999999999999999999999999999999999988 47889999999
Q ss_pred EEEcCCC--CCCcccHHHhcCCCC---CCCH----HHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHH
Q 000755 1133 SIIPQDP--TMFEGTVRNNLDPLE---EYKD----EEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLG 1203 (1300)
Q Consensus 1133 ~~vpQ~~--~lf~gTvr~Nl~~~~---~~~d----~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LA 1203 (1300)
|+|+|+| .+|..||.+.+.+.. ..+. +.+.++|+.+++.++..+. ..+||||||||++||
T Consensus 82 G~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~-----------p~~LSGGqkqRvaIA 150 (235)
T COG1122 82 GLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRP-----------PFNLSGGQKQRVAIA 150 (235)
T ss_pred EEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCC-----------ccccCCcceeeHHhh
Confidence 9999999 689999999987642 2333 3467789999987764443 357899999999999
Q ss_pred HHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHHhcC
Q 000755 1204 RVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENK 1280 (1300)
Q Consensus 1204 Rall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~~~~ 1280 (1300)
.+|..+|++||||||||+||+...+.+.+.+++..+ +.|+|++|||++.+.. ||||++|++|+++.+|+|++++++.
T Consensus 151 ~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~~ 230 (235)
T COG1122 151 GVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230 (235)
T ss_pred HHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhhh
Confidence 999999999999999999999999999999999764 4799999999999998 9999999999999999999998753
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=346.10 Aligned_cols=207 Identities=25% Similarity=0.355 Sum_probs=186.5
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHH---Hhcc
Q 000755 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHD---LRSR 1131 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~---lr~~ 1131 (1300)
|+|+||+++|+.. +++|+||||+|++||.+-|+||||||||||+++|++..+|++|+|.++|.|++.+..++ +|++
T Consensus 2 I~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 2 IRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred eeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 7999999999887 77999999999999999999999999999999999999999999999999999887665 7999
Q ss_pred cEEEcCCCCCCcc-cHHHhcCCC---CCCC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHH
Q 000755 1132 LSIIPQDPTMFEG-TVRNNLDPL---EEYK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLG 1203 (1300)
Q Consensus 1132 i~~vpQ~~~lf~g-Tvr~Nl~~~---~~~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LA 1203 (1300)
||+|+||..|... ||.||+.+. .... .+++.++|+.+||.+....+|. .||||||||+|||
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~-----------~LSGGEQQRvaIA 149 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS-----------QLSGGEQQRVAIA 149 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc-----------ccCchHHHHHHHH
Confidence 9999999988765 999998642 1222 3456789999999998888875 5699999999999
Q ss_pred HHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecCh
Q 000755 1204 RVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSP 1273 (1300)
Q Consensus 1204 Rall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~ 1273 (1300)
||+..+|++||-||||.+||+++...|++.+.+.. .|.||++.||+.+.+.+ --|++.+++|+++....+
T Consensus 150 RAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~~ 221 (223)
T COG2884 150 RAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESR 221 (223)
T ss_pred HHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecccc
Confidence 99999999999999999999999999999998864 48999999999999988 578999999999987653
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-41 Score=387.92 Aligned_cols=219 Identities=25% Similarity=0.377 Sum_probs=185.6
Q ss_pred CCceEEEEeeeeeeCCCC---CcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCC----
Q 000755 1051 THGEVDILNLQVRYAPHL---PLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSI---- 1123 (1300)
Q Consensus 1051 ~~g~i~~~~v~~~y~~~~---~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i---- 1123 (1300)
....|+++|++++|+... .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 18 ~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~ 97 (320)
T PRK13631 18 DDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNH 97 (320)
T ss_pred CCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccc
Confidence 345699999999997432 3599999999999999999999999999999999999999999999999998653
Q ss_pred ------------CHHHHhcccEEEcCCC--CCCcccHHHhcCCCC---CCCHHH----HHHHHHHcCCcHHHHhhcCCCc
Q 000755 1124 ------------GLHDLRSRLSIIPQDP--TMFEGTVRNNLDPLE---EYKDEE----IWEALDKCQLGDEVRNKEGKLD 1182 (1300)
Q Consensus 1124 ------------~~~~lr~~i~~vpQ~~--~lf~gTvr~Nl~~~~---~~~d~~----i~~~l~~~~l~~~i~~~~~gLd 1182 (1300)
....+|++++|++|+| .+|+.|+++|+.+.. ..++++ +.++++.+++.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~---------- 167 (320)
T PRK13631 98 ELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDD---------- 167 (320)
T ss_pred cccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCCh----------
Confidence 3456889999999998 688899999996431 223322 344555555531
Q ss_pred cccccCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhc-cCEEE
Q 000755 1183 SRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVID-SDMVL 1260 (1300)
Q Consensus 1183 t~v~e~G~~LSgGqrQrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~-~D~v~ 1260 (1300)
......+.+||||||||++|||||+++|+||||||||++||+.+...+.+.|++.. +++|||+|||+++.+.. ||||+
T Consensus 168 ~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~ 247 (320)
T PRK13631 168 SYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVI 247 (320)
T ss_pred hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEE
Confidence 22445677899999999999999999999999999999999999999999998754 47899999999998865 99999
Q ss_pred EEeCCEEEEecChhhHHhc
Q 000755 1261 LLSHGIIEEYDSPTKLLEN 1279 (1300)
Q Consensus 1261 vl~~G~i~e~g~~~~l~~~ 1279 (1300)
+|++|++++.|++++++++
T Consensus 248 vl~~G~i~~~g~~~~~~~~ 266 (320)
T PRK13631 248 VMDKGKILKTGTPYEIFTD 266 (320)
T ss_pred EEECCEEEEeCCHHHHhcC
Confidence 9999999999999988653
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=371.32 Aligned_cols=222 Identities=30% Similarity=0.508 Sum_probs=193.5
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccE
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLS 1133 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~ 1133 (1300)
.++++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+...+|++++
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 80 (241)
T PRK14250 3 EIEFKEVSYSSFG--KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIG 80 (241)
T ss_pred eEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEE
Confidence 4899999999964 35999999999999999999999999999999999999999999999999998877778888999
Q ss_pred EEcCCCCCCcccHHHhcCCCC---CCCHHHHHHHHHHcCCcH-HHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccC
Q 000755 1134 IIPQDPTMFEGTVRNNLDPLE---EYKDEEIWEALDKCQLGD-EVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKK 1209 (1300)
Q Consensus 1134 ~vpQ~~~lf~gTvr~Nl~~~~---~~~d~~i~~~l~~~~l~~-~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~ 1209 (1300)
|+||++.+|+.|+++|+.... ...++++.++++.+++.+ ... .....||||||||++||||++++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 81 MVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYAT-----------RDVKNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred EEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhh-----------CCcccCCHHHHHHHHHHHHHhcC
Confidence 999999999899999987432 122456777888888752 222 24567999999999999999999
Q ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHhc--CCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHHhcCCChHHH
Q 000755 1210 SKVLVLDEATASVDTATDNLIQQTLRQHF--SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENKSSSFAQ 1286 (1300)
Q Consensus 1210 ~~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~~~~~~~f~~ 1286 (1300)
|++|||||||++||+.+.+.+.+.|++.. .++|||++||+++.+.. ||+|++|++|++++.|++++++.++...+.+
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~ 229 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTK 229 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCCCcHHHH
Confidence 99999999999999999999999999864 37899999999999887 9999999999999999999998765545554
Q ss_pred HH
Q 000755 1287 LV 1288 (1300)
Q Consensus 1287 l~ 1288 (1300)
.+
T Consensus 230 ~~ 231 (241)
T PRK14250 230 LF 231 (241)
T ss_pred HH
Confidence 44
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=372.48 Aligned_cols=219 Identities=24% Similarity=0.415 Sum_probs=192.4
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCC---CCcceEEECCeecCCCCHHHHhc
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVE---PTAGEIVIDGINISSIGLHDLRS 1130 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~---p~~G~I~idg~di~~i~~~~lr~ 1130 (1300)
.|+++|++++|+. +++|+|+||++++||++||+|+||||||||+++|+|+++ |++|+|.+||.++...+....|+
T Consensus 2 ~~~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 79 (246)
T PRK14269 2 IAKTTNLNLFYGK--KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79 (246)
T ss_pred ceeeeeeEEEECC--EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhh
Confidence 4789999999974 369999999999999999999999999999999999985 69999999999998888778888
Q ss_pred ccEEEcCCCCCCcccHHHhcCCCC---C------CCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHH
Q 000755 1131 RLSIIPQDPTMFEGTVRNNLDPLE---E------YKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVC 1201 (1300)
Q Consensus 1131 ~i~~vpQ~~~lf~gTvr~Nl~~~~---~------~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~ 1201 (1300)
+++|+||++.+|..|+++|+.+.. . ..++++.++++.+++.+++... ..+.+.+||||||||++
T Consensus 80 ~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LS~G~~qrv~ 152 (246)
T PRK14269 80 NVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDK-------LKQNALALSGGQQQRLC 152 (246)
T ss_pred hEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHH-------hcCCcccCCHHHHHHHH
Confidence 999999999999999999996431 1 1123567788999886654332 33456789999999999
Q ss_pred HHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHHhcC
Q 000755 1202 LGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENK 1280 (1300)
Q Consensus 1202 LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~~~~ 1280 (1300)
|||||+++|++|+|||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++...+
T Consensus 153 laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 232 (246)
T PRK14269 153 IARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFENP 232 (246)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhCC
Confidence 999999999999999999999999999999999987668999999999999876 9999999999999999999998654
Q ss_pred C
Q 000755 1281 S 1281 (1300)
Q Consensus 1281 ~ 1281 (1300)
.
T Consensus 233 ~ 233 (246)
T PRK14269 233 K 233 (246)
T ss_pred C
Confidence 3
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-41 Score=354.56 Aligned_cols=212 Identities=26% Similarity=0.421 Sum_probs=188.8
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCC---HHHHhc
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIG---LHDLRS 1130 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~---~~~lr~ 1130 (1300)
.|+++||+..|+++ ..+|+||||+|++||.|+||||||||||||+++|.|+.+|++|+|.++|.++..+. ++++|+
T Consensus 3 ~i~~~nl~k~yp~~-~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 3 MIEVKNLSKTYPGG-HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred eEEEeeeeeecCCC-ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 58999999999744 46999999999999999999999999999999999999999999999999998887 556788
Q ss_pred ccEEEcCCCCCCcc-cHHHhcCC------------CCCCCH---HHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCCh
Q 000755 1131 RLSIIPQDPTMFEG-TVRNNLDP------------LEEYKD---EEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSM 1194 (1300)
Q Consensus 1131 ~i~~vpQ~~~lf~g-Tvr~Nl~~------------~~~~~d---~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSg 1194 (1300)
++|+|+|++.|.+. ||.+|+.. ++.++. ....++|+++|+.+...+.. ++|||
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra-----------~~LSG 150 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRA-----------STLSG 150 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHh-----------ccCCc
Confidence 99999999998765 99999742 233333 34677899999988765543 56899
Q ss_pred hHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc--CCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEec
Q 000755 1195 GQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF--SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYD 1271 (1300)
Q Consensus 1195 GqrQrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g 1271 (1300)
||+|||+|||||.++|+|++-|||+|+|||.+.+.+++.|++.. .+.|||+.-|.++.+.. ||||+-|++|+|+.+|
T Consensus 151 GQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg 230 (258)
T COG3638 151 GQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDG 230 (258)
T ss_pred chhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeC
Confidence 99999999999999999999999999999999999999999865 46899999999999988 9999999999999999
Q ss_pred ChhhHH
Q 000755 1272 SPTKLL 1277 (1300)
Q Consensus 1272 ~~~~l~ 1277 (1300)
++.++-
T Consensus 231 ~~~el~ 236 (258)
T COG3638 231 PASELT 236 (258)
T ss_pred Chhhhh
Confidence 999964
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=357.81 Aligned_cols=204 Identities=28% Similarity=0.414 Sum_probs=176.3
Q ss_pred EEEEeeeeeeCCCC--CcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHH---H-
Q 000755 1055 VDILNLQVRYAPHL--PLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHD---L- 1128 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~--~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~---l- 1128 (1300)
++++||++.|..+. ..+|+++||+|++||.++|+||||||||||+++|.|+..|++|.|.++|.|+..++.++ +
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 57899999996442 36899999999999999999999999999999999999999999999999999988544 3
Q ss_pred hcccEEEcCCCCCCcc-cHHHhcCC---CCCC----CHHHHHHHHHHcCCcHHHH-hhcCCCccccccCCCCCChhHHHH
Q 000755 1129 RSRLSIIPQDPTMFEG-TVRNNLDP---LEEY----KDEEIWEALDKCQLGDEVR-NKEGKLDSRVTENGENWSMGQRQL 1199 (1300)
Q Consensus 1129 r~~i~~vpQ~~~lf~g-Tvr~Nl~~---~~~~----~d~~i~~~l~~~~l~~~i~-~~~~gLdt~v~e~G~~LSgGqrQr 1199 (1300)
|++||||+|+..|++. |++||+.. .... ..+.+.+.++.+++.+... +.| ..||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p-----------~eLSGGqqQR 150 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKP-----------SELSGGQQQR 150 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCc-----------hhcCHHHHHH
Confidence 4579999999999876 99999862 2222 2345667788888876554 333 5689999999
Q ss_pred HHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc--CCcEEEEEeCChhhhhccCEEEEEeCCEEEE
Q 000755 1200 VCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF--SDCTVITIAHRITSVIDSDMVLLLSHGIIEE 1269 (1300)
Q Consensus 1200 l~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~iaHrl~~i~~~D~v~vl~~G~i~e 1269 (1300)
+||||||+.+|+|++.||||.+||.++.+.|.+.+++.. .++|||+|||+......|||++.|.+|++.+
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 999999999999999999999999999999999999875 3689999999999999999999999999543
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=357.94 Aligned_cols=219 Identities=26% Similarity=0.378 Sum_probs=185.2
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccE
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLS 1133 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~ 1133 (1300)
.++++++++.|+. ..||+|+||+|++||+++|+||||||||||+++++|+.+|++|+|.++|.++... ...++
T Consensus 3 ~l~i~~v~~~f~~--~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~~ 75 (248)
T COG1116 3 LLEIEGVSKSFGG--VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDIG 75 (248)
T ss_pred eEEEEeeEEEeCc--eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCEE
Confidence 5899999999987 4699999999999999999999999999999999999999999999999887432 45799
Q ss_pred EEcCCCCCCcc-cHHHhcCCCCCC-------CHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHH
Q 000755 1134 IIPQDPTMFEG-TVRNNLDPLEEY-------KDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRV 1205 (1300)
Q Consensus 1134 ~vpQ~~~lf~g-Tvr~Nl~~~~~~-------~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARa 1205 (1300)
||+|++.||+- ||++|+.+.-+. ..+.+.+.|+.+||.++-.+.|. .||||||||++||||
T Consensus 76 ~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~-----------qLSGGMrQRVaiARA 144 (248)
T COG1116 76 YVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPH-----------QLSGGMRQRVAIARA 144 (248)
T ss_pred EEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCcc-----------ccChHHHHHHHHHHH
Confidence 99999999987 999998643221 23457889999999998887774 569999999999999
Q ss_pred HccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc--CCcEEEEEeCChhhhhc-cCEEEEEeC--CEEE---Eec--Chhh
Q 000755 1206 LLKKSKVLVLDEATASVDTATDNLIQQTLRQHF--SDCTVITIAHRITSVID-SDMVLLLSH--GIIE---EYD--SPTK 1275 (1300)
Q Consensus 1206 ll~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~iaHrl~~i~~-~D~v~vl~~--G~i~---e~g--~~~~ 1275 (1300)
|+.+|+||+||||+++||..|+..+|+.+.+.. .++||++|||++++... +|||+||.+ |+|. +.+ .|.
T Consensus 145 L~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~~~~~i~l~rpR- 223 (248)
T COG1116 145 LATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIGEELEIDLPRPR- 223 (248)
T ss_pred HhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcceeeEEecCCCCCc-
Confidence 999999999999999999999999999988754 35899999999999877 999999999 5553 222 233
Q ss_pred HHhcCCChHHHHHHHHhh
Q 000755 1276 LLENKSSSFAQLVAEYTQ 1293 (1300)
Q Consensus 1276 l~~~~~~~f~~l~~~~~~ 1293 (1300)
...+..|..+.++-+.
T Consensus 224 --~~~~~~f~~l~~~i~~ 239 (248)
T COG1116 224 --IRGDPEFLELREELLE 239 (248)
T ss_pred --cccChHHHHHHHHHHH
Confidence 2334567777665543
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=388.12 Aligned_cols=218 Identities=22% Similarity=0.387 Sum_probs=191.4
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccE
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLS 1133 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~ 1133 (1300)
.|+++|++++|+++ ..+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.+||.++..++.+ +++++
T Consensus 3 ~l~i~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig 79 (356)
T PRK11650 3 GLKLQAVRKSYDGK-TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDIA 79 (356)
T ss_pred EEEEEeEEEEeCCC-CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 48999999999422 3599999999999999999999999999999999999999999999999999887754 46899
Q ss_pred EEcCCCCCCcc-cHHHhcCCCC---CCC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHH
Q 000755 1134 IIPQDPTMFEG-TVRNNLDPLE---EYK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRV 1205 (1300)
Q Consensus 1134 ~vpQ~~~lf~g-Tvr~Nl~~~~---~~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARa 1205 (1300)
|+||++.+|+. ||++|+.+.. ..+ ++++.++++.+++.+...+.| .+||||||||++||||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvalARA 148 (356)
T PRK11650 80 MVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP-----------RELSGGQRQRVAMGRA 148 (356)
T ss_pred EEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999965 9999997431 122 245678899999877665554 4689999999999999
Q ss_pred HccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHHhcCCC
Q 000755 1206 LLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENKSS 1282 (1300)
Q Consensus 1206 ll~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~~~~~~ 1282 (1300)
|+++|++|+|||||++||+.+.+.+.+.|++..+ +.|+|+|||+++++.. ||+|++|++|++++.|+|+++++++..
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~~ 228 (356)
T PRK11650 149 IVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPAS 228 (356)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCcc
Confidence 9999999999999999999999999999988653 6899999999999887 999999999999999999999987765
Q ss_pred hHH
Q 000755 1283 SFA 1285 (1300)
Q Consensus 1283 ~f~ 1285 (1300)
.|.
T Consensus 229 ~~~ 231 (356)
T PRK11650 229 TFV 231 (356)
T ss_pred HHH
Confidence 553
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=387.26 Aligned_cols=220 Identities=25% Similarity=0.406 Sum_probs=189.6
Q ss_pred EEEEeeeeeeCC--CCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHH---Hh
Q 000755 1055 VDILNLQVRYAP--HLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHD---LR 1129 (1300)
Q Consensus 1055 i~~~~v~~~y~~--~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~---lr 1129 (1300)
|+++|++++|+. ...++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++..++..+ +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 789999999972 2346999999999999999999999999999999999999999999999999998877654 47
Q ss_pred cccEEEcCCCCCCc-ccHHHhcCCC---CCCC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHH
Q 000755 1130 SRLSIIPQDPTMFE-GTVRNNLDPL---EEYK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVC 1201 (1300)
Q Consensus 1130 ~~i~~vpQ~~~lf~-gTvr~Nl~~~---~~~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~ 1201 (1300)
++++|+||++.+|. .|+++|+... ...+ ++++.++++.+++.+...+ ...+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADR-----------YPAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhC-----------ChhhCCHHHHHHHH
Confidence 88999999999886 5999998642 1222 2346677888887655433 33578999999999
Q ss_pred HHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHHh
Q 000755 1202 LGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLE 1278 (1300)
Q Consensus 1202 LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~~ 1278 (1300)
|||||+++|++|||||||++||+.+...+.+.|++..+ ++|||++||+++.+.. ||+|++|++|++++.|++++++.
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999998653 6899999999999987 99999999999999999999987
Q ss_pred cCCChHH
Q 000755 1279 NKSSSFA 1285 (1300)
Q Consensus 1279 ~~~~~f~ 1285 (1300)
++...+.
T Consensus 231 ~~~~~~~ 237 (343)
T PRK11153 231 HPKHPLT 237 (343)
T ss_pred CCCcHHH
Confidence 6544443
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=374.96 Aligned_cols=395 Identities=26% Similarity=0.378 Sum_probs=264.2
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEE------------------------------EcCeEEEEecCCcC
Q 000755 642 VFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLK------------------------------LCGTKAYVAQSPWI 691 (1300)
Q Consensus 642 i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~------------------------------~~g~~ayv~Q~~~l 691 (1300)
.++|+.++|+|+||-||||-++.|+|++.|.=|.-. +--++-||.--|-.
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk~ 176 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKV 176 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHHH
Confidence 468999999999999999999999999998766532 11122355445666
Q ss_pred CCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecCCCC
Q 000755 692 QSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSA 771 (1300)
Q Consensus 692 ~~~Ti~eNI~fg~~~~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLARAly~~~~illLDep~sa 771 (1300)
..|+++|=+.--. ...+++++++..+|++- ++....+||||+-||+|||-|+.+++|+|++|||+|-
T Consensus 177 ~KG~v~elLk~~d--e~g~~devve~l~L~nv-----------l~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSy 243 (591)
T COG1245 177 VKGKVGELLKKVD--ERGKFDEVVERLGLENV-----------LDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSY 243 (591)
T ss_pred hcchHHHHHHhhh--hcCcHHHHHHHhcchhh-----------hhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCccc
Confidence 7788877554211 11355666666665543 3456678999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhcC-CcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHHHhcCchHHHHHHHHHHHhhhhc
Q 000755 772 VDAHTGSHLFKEVLLGLLR-SKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDILNSGTDFMVLVGAHQQALSALD 849 (1300)
Q Consensus 772 LD~~t~~~i~~~~~~~~l~-~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~ 849 (1300)
||...+-.. .+.++.+.+ +|+||+|.|++..|.. +|.|.++-.- .|-|--...
T Consensus 244 LDi~qRl~~-ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~YG~----pg~YGvvs~-------------------- 298 (591)
T COG1245 244 LDIRQRLNA-ARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILYGE----PGVYGVVSK-------------------- 298 (591)
T ss_pred ccHHHHHHH-HHHHHHHhccCCeEEEEechHHHHHHhhheeEEEecC----CccceEecc--------------------
Confidence 999876655 345666766 6999999999999987 8988877421 011100000
Q ss_pred ccCCCCccccccccccCCCccccccccccCccccccccchhhhhhhHHHHHHHHHHhhhhhhHHHHHHHHhhchHHHHHh
Q 000755 850 SIEGGPVSERISMNKENGGMDTTNGVTMKEGNEDIQTDKVDEQYYIPSARELSRLVGVCKAPVIQHFSETISGSTTIRSF 929 (1300)
Q Consensus 850 ~~~~~~~~~~~~~~~~~~~e~~~~g~~lp~grnr~s~D~v~~~~y~~~~r~l~rl~~~~~sp~~~~~~E~l~G~~tIraf 929 (1300)
|-| .| .-+.+.+
T Consensus 299 ----------------------------p~s-----------------vr--------------~gIN~yL--------- 310 (591)
T COG1245 299 ----------------------------PKS-----------------VR--------------VGINEYL--------- 310 (591)
T ss_pred ----------------------------chH-----------------HH--------------HHHHHHH---------
Confidence 000 00 0000000
Q ss_pred cchHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHH
Q 000755 930 DQESRFRDTNMKLVDGYSRPKFHIAGAMEWLCFRLDMLSSLTFAFSLVLLISIPKGVIEPAIAGLAVTYGLNLNMLQAWV 1009 (1300)
Q Consensus 930 ~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~gl~l~~~~~~~~~~~~~ 1009 (1300)
.|.+.
T Consensus 311 ------------------------------------------------------~Gyl~--------------------- 315 (591)
T COG1245 311 ------------------------------------------------------KGYLP--------------------- 315 (591)
T ss_pred ------------------------------------------------------hccCc---------------------
Confidence 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccCCCCCCCCC-CceEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEE
Q 000755 1010 IWNLCNLENKIISVERILQYTCISSEPPLVIEESRPDCSWPT-HGEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIV 1088 (1300)
Q Consensus 1010 ~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~-~g~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIv 1088 (1300)
-|| +..-+|+- ..+.. ++..-.. .-.++..++++.|++- .|+==.=+|+.||++|++
T Consensus 316 ------~EN-----------~R~R~~~I-~F~~~-~~~~~~~~~~lv~y~~~~k~~g~F---~L~V~~G~i~~gEvigil 373 (591)
T COG1245 316 ------EEN-----------VRFRPEEI-EFEEK-PPRDDKARDTLVEYPDLKKTYGDF---KLEVEEGEIYDGEVIGIL 373 (591)
T ss_pred ------hhc-----------ccccccce-eeecc-CcccccccceeeecchheeecCce---EEEecCCeeecceEEEEE
Confidence 000 01111111 00111 1111111 2234555566666531 222222346678999999
Q ss_pred CCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEEEcCCC-CCCcccHHHhcCCCCC--CCHHHH-HHH
Q 000755 1089 GRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDP-TMFEGTVRNNLDPLEE--YKDEEI-WEA 1164 (1300)
Q Consensus 1089 G~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~vpQ~~-~lf~gTvr~Nl~~~~~--~~d~~i-~~~ 1164 (1300)
||||-||||++++|+|.++|++|. ..+ -+++|=||-- .-|+|||++-+.-... +.+.-. .++
T Consensus 374 GpNgiGKTTFvk~LAG~ikPdeg~----~~~----------~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei 439 (591)
T COG1245 374 GPNGIGKTTFVKLLAGVIKPDEGS----EED----------LKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEI 439 (591)
T ss_pred CCCCcchHHHHHHHhccccCCCCC----Ccc----------ceEeecceeecCCCCCcHHHHHHHhhhhhcccchhHHhh
Confidence 999999999999999999999997 222 2588889853 2389999988742111 211111 123
Q ss_pred HHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc--CCcE
Q 000755 1165 LDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF--SDCT 1242 (1300)
Q Consensus 1165 l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~T 1242 (1300)
.+..++.+ .+.....+|||||.||+++|-||.+++++.+||||+|.||.+.+-.+-++||+.. .++|
T Consensus 440 ~~pl~l~~-----------i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kt 508 (591)
T COG1245 440 VKPLNLED-----------LLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKT 508 (591)
T ss_pred cCccchHH-----------HHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCce
Confidence 34444433 3334456799999999999999999999999999999999999999999999854 4689
Q ss_pred EEEEeCChhhhhc-cCEEEEEeC
Q 000755 1243 VITIAHRITSVID-SDMVLLLSH 1264 (1300)
Q Consensus 1243 vi~iaHrl~~i~~-~D~v~vl~~ 1264 (1300)
.++|-||+-.+.. +||++|.+.
T Consensus 509 a~vVdHDi~~~dyvsDr~ivF~G 531 (591)
T COG1245 509 ALVVDHDIYMIDYVSDRLIVFEG 531 (591)
T ss_pred EEEEecceehhhhhhceEEEEec
Confidence 9999999998877 999999964
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=386.46 Aligned_cols=218 Identities=25% Similarity=0.399 Sum_probs=192.0
Q ss_pred ceEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhccc
Q 000755 1053 GEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRL 1132 (1300)
Q Consensus 1053 g~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i 1132 (1300)
..|+++|++++|+. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+.+ ++++
T Consensus 5 ~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 80 (351)
T PRK11432 5 NFVVLKNITKRFGS--NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDI 80 (351)
T ss_pred cEEEEEeEEEEECC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 46999999999975 3589999999999999999999999999999999999999999999999999876643 5789
Q ss_pred EEEcCCCCCCcc-cHHHhcCCCC---CCC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHH
Q 000755 1133 SIIPQDPTMFEG-TVRNNLDPLE---EYK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGR 1204 (1300)
Q Consensus 1133 ~~vpQ~~~lf~g-Tvr~Nl~~~~---~~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LAR 1204 (1300)
+|++|++.+|+. ||++|+.+.. ..+ ++++.++++.+++.++..+. ...||||||||++|||
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~-----------~~~LSgGq~QRVaLAR 149 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRY-----------VDQISGGQQQRVALAR 149 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHHHHHH
Confidence 999999999975 9999997421 122 34567888888887654443 3578999999999999
Q ss_pred HHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHHhcCC
Q 000755 1205 VLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENKS 1281 (1300)
Q Consensus 1205 all~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~~~~~ 1281 (1300)
||+++|++|+|||||++||+.+.+.+.+.|++..+ +.|+|+|||+.+++.. ||||++|++|++++.|+|+++.+++.
T Consensus 150 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~ 229 (351)
T PRK11432 150 ALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPA 229 (351)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 99999999999999999999999999999988654 6899999999999977 99999999999999999999998877
Q ss_pred ChHH
Q 000755 1282 SSFA 1285 (1300)
Q Consensus 1282 ~~f~ 1285 (1300)
..|.
T Consensus 230 ~~~~ 233 (351)
T PRK11432 230 SRFM 233 (351)
T ss_pred chHH
Confidence 6553
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=381.50 Aligned_cols=219 Identities=24% Similarity=0.395 Sum_probs=197.0
Q ss_pred ceEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhccc
Q 000755 1053 GEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRL 1132 (1300)
Q Consensus 1053 g~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i 1132 (1300)
..|+++||+++|++ ..+++|+||+|++||+++++||||||||||+++|+|+..|++|+|.+||.|+..+++++ +.|
T Consensus 4 ~~l~i~~v~k~yg~--~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~k--R~i 79 (352)
T COG3842 4 PALEIRNVSKSFGD--FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEK--RPI 79 (352)
T ss_pred ceEEEEeeeeecCC--eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhh--ccc
Confidence 46999999999984 46999999999999999999999999999999999999999999999999999988774 689
Q ss_pred EEEcCCCCCCcc-cHHHhcCCCCC----CCH----HHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHH
Q 000755 1133 SIIPQDPTMFEG-TVRNNLDPLEE----YKD----EEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLG 1203 (1300)
Q Consensus 1133 ~~vpQ~~~lf~g-Tvr~Nl~~~~~----~~d----~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LA 1203 (1300)
++|+|+..||+. ||++|+.+.-. ..+ +.+.++|+.+++.++-.+.|. .||||||||++||
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~-----------qLSGGQqQRVALA 148 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPH-----------QLSGGQQQRVALA 148 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChh-----------hhChHHHHHHHHH
Confidence 999999999976 99999875321 232 367889999999988777764 5699999999999
Q ss_pred HHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc--CCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHHhcC
Q 000755 1204 RVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF--SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENK 1280 (1300)
Q Consensus 1204 Rall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~~~~ 1280 (1300)
|||..+|++|+||||.|+||..-+..++.-+++.. .+.|.|+||||-++... +|||.||++|+|...|+|+|+...+
T Consensus 149 RAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P 228 (352)
T COG3842 149 RALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228 (352)
T ss_pred HHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence 99999999999999999999999999999888754 37899999999999887 9999999999999999999999988
Q ss_pred CChHHH
Q 000755 1281 SSSFAQ 1286 (1300)
Q Consensus 1281 ~~~f~~ 1286 (1300)
.+.|-.
T Consensus 229 ~~~fVA 234 (352)
T COG3842 229 ATRFVA 234 (352)
T ss_pred chHHHH
Confidence 877743
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-40 Score=370.74 Aligned_cols=222 Identities=27% Similarity=0.443 Sum_probs=191.5
Q ss_pred CceEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCC-----CCcceEEECCeecCC--CC
Q 000755 1052 HGEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVE-----PTAGEIVIDGINISS--IG 1124 (1300)
Q Consensus 1052 ~g~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~-----p~~G~I~idg~di~~--i~ 1124 (1300)
.+.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||.++.. .+
T Consensus 11 ~~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~ 88 (260)
T PRK10744 11 PSKIQVRNLNFYYGK--FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88 (260)
T ss_pred CceEEEEEEEEEeCC--eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence 467999999999975 359999999999999999999999999999999999986 589999999999853 34
Q ss_pred HHHHhcccEEEcCCCCCCcccHHHhcCCCC----CCC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhH
Q 000755 1125 LHDLRSRLSIIPQDPTMFEGTVRNNLDPLE----EYK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQ 1196 (1300)
Q Consensus 1125 ~~~lr~~i~~vpQ~~~lf~gTvr~Nl~~~~----~~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGq 1196 (1300)
...+|++++|+||++.+|+.|+++|+.... ..+ +++++++++.+++.+.+.. .......+|||||
T Consensus 89 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~Gq 161 (260)
T PRK10744 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKD-------KLHQSGYSLSGGQ 161 (260)
T ss_pred hHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH-------HHhcCCCCCCHHH
Confidence 567788999999999999899999986421 122 2457778888887543322 2344567899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhh
Q 000755 1197 RQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTK 1275 (1300)
Q Consensus 1197 rQrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~ 1275 (1300)
|||++|||||+++|++|||||||++||+.+.+.+.+.|++..++.|||++||+++.+.. ||+|++|++|++++.|++++
T Consensus 162 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 241 (260)
T PRK10744 162 QQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDT 241 (260)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999987667899999999999976 99999999999999999999
Q ss_pred HHhcCCC
Q 000755 1276 LLENKSS 1282 (1300)
Q Consensus 1276 l~~~~~~ 1282 (1300)
+.+.+..
T Consensus 242 ~~~~~~~ 248 (260)
T PRK10744 242 IFTKPAK 248 (260)
T ss_pred HHhCCCc
Confidence 9865433
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=370.61 Aligned_cols=219 Identities=26% Similarity=0.438 Sum_probs=189.0
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCC-----CCcceEEECCeecCC--CCHH
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVE-----PTAGEIVIDGINISS--IGLH 1126 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~-----p~~G~I~idg~di~~--i~~~ 1126 (1300)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++.. ....
T Consensus 6 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (253)
T PRK14242 6 KMEARGLSFFYGD--FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV 83 (253)
T ss_pred EEEEeeeEEEECC--eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHH
Confidence 5999999999974 359999999999999999999999999999999999975 689999999999864 3445
Q ss_pred HHhcccEEEcCCCCCCcccHHHhcCCC----CC----CCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHH
Q 000755 1127 DLRSRLSIIPQDPTMFEGTVRNNLDPL----EE----YKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQ 1198 (1300)
Q Consensus 1127 ~lr~~i~~vpQ~~~lf~gTvr~Nl~~~----~~----~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQ 1198 (1300)
.+|++++|+||++.+|..|+++|+.+. .. ..++++.++++.+++.+.+.. .......+|||||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~q 156 (253)
T PRK14242 84 ELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKD-------RLHESALGLSGGQQQ 156 (253)
T ss_pred HHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcccCCHHHHH
Confidence 678899999999999988999998642 11 113456778888888654322 233456789999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHH
Q 000755 1199 LVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLL 1277 (1300)
Q Consensus 1199 rl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~ 1277 (1300)
|++|||||+.+|++|||||||++||+.+.+.+.+.|++..+++|||++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 157 RLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIF 236 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667899999999999976 9999999999999999999998
Q ss_pred hcCC
Q 000755 1278 ENKS 1281 (1300)
Q Consensus 1278 ~~~~ 1281 (1300)
+.+.
T Consensus 237 ~~~~ 240 (253)
T PRK14242 237 TRPR 240 (253)
T ss_pred cCCC
Confidence 6543
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=376.89 Aligned_cols=215 Identities=27% Similarity=0.416 Sum_probs=189.2
Q ss_pred eEEEEeeeeeeCCC-CCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhccc
Q 000755 1054 EVDILNLQVRYAPH-LPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRL 1132 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~-~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i 1132 (1300)
.++++|++++|+.. .+++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999743 24599999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEcCCCC--CCcccHHHhcCCCC---CCC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHH
Q 000755 1133 SIIPQDPT--MFEGTVRNNLDPLE---EYK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLG 1203 (1300)
Q Consensus 1133 ~~vpQ~~~--lf~gTvr~Nl~~~~---~~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LA 1203 (1300)
+|+||+|. ++..||++|+.+.. ..+ ++.+.++++.+++.++....+ .+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREP-----------ARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence 99999983 55679999996431 122 245778899998876554433 57899999999999
Q ss_pred HHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhccCEEEEEeCCEEEEecChhhHHhc
Q 000755 1204 RVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLEN 1279 (1300)
Q Consensus 1204 Rall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~~D~v~vl~~G~i~e~g~~~~l~~~ 1279 (1300)
|||+++|++|||||||++||+.+.+.+.+.|++..+ ++|||++||+++.+..||||++|++|++++.|+++++.++
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 999999999999999999999999999999998653 7899999999999977999999999999999999998754
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=365.75 Aligned_cols=217 Identities=32% Similarity=0.488 Sum_probs=194.6
Q ss_pred CCceEEEEeeeeeeCCC-CCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHh
Q 000755 1051 THGEVDILNLQVRYAPH-LPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLR 1129 (1300)
Q Consensus 1051 ~~g~i~~~~v~~~y~~~-~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr 1129 (1300)
..+.++++|++++|++. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+....+
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 35789999999999753 23599999999999999999999999999999999999999999999999998877777778
Q ss_pred cccEEEcCCCCCCcccHHHhcCCCC-CCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHcc
Q 000755 1130 SRLSIIPQDPTMFEGTVRNNLDPLE-EYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLK 1208 (1300)
Q Consensus 1130 ~~i~~vpQ~~~lf~gTvr~Nl~~~~-~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~ 1208 (1300)
++++|+||++.+|+.|+++|+.+.. .....++++..++.++.+++..++.|+++.+.....+||||||||++|||||++
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~ 167 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR 167 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 8999999999999999999997532 233445566667777888888888789888889999999999999999999999
Q ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhccCEEEEEeCCEE
Q 000755 1209 KSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGII 1267 (1300)
Q Consensus 1209 ~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~~D~v~vl~~G~i 1267 (1300)
+|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||+|++|++|++
T Consensus 168 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 168 NPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999987667899999999999988999999999974
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=364.95 Aligned_cols=210 Identities=26% Similarity=0.354 Sum_probs=182.0
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEE
Q 000755 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSI 1134 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~ 1134 (1300)
|+++||+++|++...++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++... ...++++++|
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEEE
Confidence 578999999975324699999999999999999999999999999999999999999999999998754 3567788999
Q ss_pred EcCCCCCC-cccHHHhcCCCC---CCC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHH
Q 000755 1135 IPQDPTMF-EGTVRNNLDPLE---EYK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVL 1206 (1300)
Q Consensus 1135 vpQ~~~lf-~gTvr~Nl~~~~---~~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARal 1206 (1300)
+||++.+| ..|+++|+.... ... ++++.++++.+++.+.... ...+||+|||||++||||+
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~al 148 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANK-----------RARTLSGGMKRKLSLAIAL 148 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhC-----------hhhhCCHHHHHHHHHHHHH
Confidence 99999988 469999986321 112 2456778888887654332 2357999999999999999
Q ss_pred ccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhH
Q 000755 1207 LKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKL 1276 (1300)
Q Consensus 1207 l~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l 1276 (1300)
+++|++|||||||++||+.+.+.+.+.|++..+++|||++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 149 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 149 IGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred hcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999999987667999999999999987 999999999999999998765
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=377.81 Aligned_cols=216 Identities=27% Similarity=0.469 Sum_probs=185.4
Q ss_pred eEEEEeeeeeeCCCC---CcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCC--HHHH
Q 000755 1054 EVDILNLQVRYAPHL---PLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIG--LHDL 1128 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~---~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~--~~~l 1128 (1300)
.|+++||+++|++.. .++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+ ...+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 378999999997532 36999999999999999999999999999999999999999999999999997643 4577
Q ss_pred hcccEEEcCCC--CCCcccHHHhcCCCC---CCCH----HHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHH
Q 000755 1129 RSRLSIIPQDP--TMFEGTVRNNLDPLE---EYKD----EEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQL 1199 (1300)
Q Consensus 1129 r~~i~~vpQ~~--~lf~gTvr~Nl~~~~---~~~d----~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQr 1199 (1300)
|++++|+||+| .+|+.|+++|+.+.. ..++ +.+.++++.+++.. ..........||||||||
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~---------~~~~~~~~~~LSgGq~qr 152 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDY---------EDYKDKSPFELSGGQKRR 152 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCc---------hhhccCCcccCCHHHHHH
Confidence 88999999998 467889999996421 2233 34667888888751 011233456899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhH
Q 000755 1200 VCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKL 1276 (1300)
Q Consensus 1200 l~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l 1276 (1300)
++|||||+.+|++|||||||++||+.+...+.+.|++..+ +.|||++||+++.+.. ||||++|++|++++.|+++++
T Consensus 153 v~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~ 232 (287)
T PRK13637 153 VAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREV 232 (287)
T ss_pred HHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999998653 6899999999999876 999999999999999999998
Q ss_pred Hh
Q 000755 1277 LE 1278 (1300)
Q Consensus 1277 ~~ 1278 (1300)
++
T Consensus 233 ~~ 234 (287)
T PRK13637 233 FK 234 (287)
T ss_pred Hh
Confidence 75
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=386.48 Aligned_cols=218 Identities=25% Similarity=0.387 Sum_probs=191.7
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccE
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLS 1133 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~ 1133 (1300)
.|+++|++++|+. ..+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.+||.++.+.+.+ +++++
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~ig 79 (353)
T TIGR03265 4 YLSIDNIRKRFGA--FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDYG 79 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 5899999999975 3589999999999999999999999999999999999999999999999999877654 57899
Q ss_pred EEcCCCCCCc-ccHHHhcCCCC---CCC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHH
Q 000755 1134 IIPQDPTMFE-GTVRNNLDPLE---EYK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRV 1205 (1300)
Q Consensus 1134 ~vpQ~~~lf~-gTvr~Nl~~~~---~~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARa 1205 (1300)
|+||++.+|+ .||++|+.+.. ..+ ++++.++++.+++.+...+. ..+||||||||++||||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~-----------~~~LSgGq~QRvaLARa 148 (353)
T TIGR03265 80 IVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKY-----------PGQLSGGQQQRVALARA 148 (353)
T ss_pred EEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCC-----------hhhCCHHHHHHHHHHHH
Confidence 9999999996 59999996421 122 34577788888887655444 35789999999999999
Q ss_pred HccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHHhcCCC
Q 000755 1206 LLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENKSS 1282 (1300)
Q Consensus 1206 ll~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~~~~~~ 1282 (1300)
|+++|++|+|||||++||..+++.+.+.|++..+ +.|+|+|||+++++.. ||||++|++|++++.|+|+++++++..
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~~ 228 (353)
T TIGR03265 149 LATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPAT 228 (353)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCC
Confidence 9999999999999999999999999999988653 6899999999999877 999999999999999999999988776
Q ss_pred hHHH
Q 000755 1283 SFAQ 1286 (1300)
Q Consensus 1283 ~f~~ 1286 (1300)
.|..
T Consensus 229 ~~~a 232 (353)
T TIGR03265 229 PFVA 232 (353)
T ss_pred HHHH
Confidence 6643
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-40 Score=368.29 Aligned_cols=221 Identities=27% Similarity=0.469 Sum_probs=189.9
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCC-----cceEEECCeecCCC--CHHH
Q 000755 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPT-----AGEIVIDGINISSI--GLHD 1127 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~-----~G~I~idg~di~~i--~~~~ 1127 (1300)
++++|++++|++. .+++|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.+||.++... +...
T Consensus 2 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~ 79 (247)
T TIGR00972 2 IEIENLNLFYGEK--EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVE 79 (247)
T ss_pred EEEEEEEEEECCe--eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHH
Confidence 7899999999753 5899999999999999999999999999999999999998 99999999998753 3456
Q ss_pred HhcccEEEcCCCCCCcccHHHhcCCC---CC-CC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHH
Q 000755 1128 LRSRLSIIPQDPTMFEGTVRNNLDPL---EE-YK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQL 1199 (1300)
Q Consensus 1128 lr~~i~~vpQ~~~lf~gTvr~Nl~~~---~~-~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQr 1199 (1300)
.|++++|+||++.+|..|+++|+... .. .+ ++++.++++.+++.+.+.. .......+||||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgG~~qr 152 (247)
T TIGR00972 80 LRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKD-------RLHDSALGLSGGQQQR 152 (247)
T ss_pred HHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhh-------HhhCCcccCCHHHHHH
Confidence 78899999999999889999998632 11 11 2456778888888643321 1233456899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHHh
Q 000755 1200 VCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLE 1278 (1300)
Q Consensus 1200 l~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~~ 1278 (1300)
++|||||+++|+++||||||++||+.+...+.+.|++..+++|||++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 153 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (247)
T TIGR00972 153 LCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFT 232 (247)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999987666899999999999977 99999999999999999999987
Q ss_pred cCCChH
Q 000755 1279 NKSSSF 1284 (1300)
Q Consensus 1279 ~~~~~f 1284 (1300)
++...+
T Consensus 233 ~~~~~~ 238 (247)
T TIGR00972 233 NPKEKR 238 (247)
T ss_pred CCCChH
Confidence 655444
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-40 Score=366.90 Aligned_cols=213 Identities=24% Similarity=0.394 Sum_probs=183.1
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccE
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLS 1133 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~ 1133 (1300)
.++++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+. .+++++
T Consensus 2 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 77 (239)
T cd03296 2 SIEVRNVSKRFGD--FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVG 77 (239)
T ss_pred EEEEEeEEEEECC--EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceE
Confidence 3789999999975 359999999999999999999999999999999999999999999999999876543 357899
Q ss_pred EEcCCCCCCc-ccHHHhcCCCCC---C----C----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHH
Q 000755 1134 IIPQDPTMFE-GTVRNNLDPLEE---Y----K----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVC 1201 (1300)
Q Consensus 1134 ~vpQ~~~lf~-gTvr~Nl~~~~~---~----~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~ 1201 (1300)
|+||+|.+|. .|+++|+.+... . . ++++.++++.+++.+...+ ...+||+|||||++
T Consensus 78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~ 146 (239)
T cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADR-----------YPAQLSGGQRQRVA 146 (239)
T ss_pred EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhc-----------ChhhCCHHHHHHHH
Confidence 9999999886 599999964311 1 1 2345667888877554333 33578999999999
Q ss_pred HHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHHh
Q 000755 1202 LGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLE 1278 (1300)
Q Consensus 1202 LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~~ 1278 (1300)
|||||+++|++|||||||++||+.+.+.+.+.|++..+ ++|||++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 147 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 99999999999999999999999999999999998643 6899999999999876 99999999999999999999986
Q ss_pred cCC
Q 000755 1279 NKS 1281 (1300)
Q Consensus 1279 ~~~ 1281 (1300)
.+.
T Consensus 227 ~~~ 229 (239)
T cd03296 227 HPA 229 (239)
T ss_pred CCC
Confidence 543
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-40 Score=368.98 Aligned_cols=224 Identities=29% Similarity=0.465 Sum_probs=191.6
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CcceEEECCeecCCCCHHHH
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGEIVIDGINISSIGLHDL 1128 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p-----~~G~I~idg~di~~i~~~~l 1128 (1300)
.++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++...+...+
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 80 (250)
T PRK14247 3 KIEIRDLKVSFGQ--VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIEL 80 (250)
T ss_pred eEEEEeeEEEECC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHH
Confidence 4899999999975 3599999999999999999999999999999999999984 69999999999988887888
Q ss_pred hcccEEEcCCCCCC-cccHHHhcCCCC---CC--C----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHH
Q 000755 1129 RSRLSIIPQDPTMF-EGTVRNNLDPLE---EY--K----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQ 1198 (1300)
Q Consensus 1129 r~~i~~vpQ~~~lf-~gTvr~Nl~~~~---~~--~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQ 1198 (1300)
|++++|+||++.+| ..|+++|+.+.. .. . ++++.++++.+++.+.+.. .++ ....+|||||||
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~----~~~~~LSgG~~q 153 (250)
T PRK14247 81 RRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKD---RLD----APAGKLSGGQQQ 153 (250)
T ss_pred hccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhh---hhc----CCcccCCHHHHH
Confidence 89999999999765 569999986321 11 1 3457788888888653321 223 345689999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHH
Q 000755 1199 LVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLL 1277 (1300)
Q Consensus 1199 rl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~ 1277 (1300)
|++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 154 RLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHH
Confidence 999999999999999999999999999999999999987667999999999999876 9999999999999999999998
Q ss_pred hcCCChHHH
Q 000755 1278 ENKSSSFAQ 1286 (1300)
Q Consensus 1278 ~~~~~~f~~ 1286 (1300)
+++...+.+
T Consensus 234 ~~~~~~~~~ 242 (250)
T PRK14247 234 TNPRHELTE 242 (250)
T ss_pred cCCccHHHH
Confidence 765444433
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=369.02 Aligned_cols=211 Identities=28% Similarity=0.438 Sum_probs=182.4
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCC---HHHHhcc
Q 000755 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIG---LHDLRSR 1131 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~---~~~lr~~ 1131 (1300)
++++|++++|+++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+ ...+|++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 1 IEVENLSKTYPNG-KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ 79 (241)
T ss_pred CEEeeEEEecCCc-cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhc
Confidence 4789999999752 35999999999999999999999999999999999999999999999999998776 4567889
Q ss_pred cEEEcCCCCCCc-ccHHHhcCCCC---------------CCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChh
Q 000755 1132 LSIIPQDPTMFE-GTVRNNLDPLE---------------EYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMG 1195 (1300)
Q Consensus 1132 i~~vpQ~~~lf~-gTvr~Nl~~~~---------------~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgG 1195 (1300)
++|+||++.+|. .|+++|+.... ...++++.++++.+++.+.. ...+.+||||
T Consensus 80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G 148 (241)
T cd03256 80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKA-----------YQRADQLSGG 148 (241)
T ss_pred cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhh-----------CCCcccCCHH
Confidence 999999998886 59999985311 11133466677777765432 3345689999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc--CCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecC
Q 000755 1196 QRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF--SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDS 1272 (1300)
Q Consensus 1196 qrQrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~ 1272 (1300)
||||++|||||+++|++|||||||++||+.+.+.+.+.|++.. .++|||++||+++.+.. ||+|++|++|++++.|+
T Consensus 149 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 228 (241)
T cd03256 149 QQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGP 228 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecC
Confidence 9999999999999999999999999999999999999999864 37899999999999986 99999999999999999
Q ss_pred hhhHH
Q 000755 1273 PTKLL 1277 (1300)
Q Consensus 1273 ~~~l~ 1277 (1300)
++++.
T Consensus 229 ~~~~~ 233 (241)
T cd03256 229 PAELT 233 (241)
T ss_pred HHHhh
Confidence 98874
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-40 Score=368.96 Aligned_cols=223 Identities=27% Similarity=0.412 Sum_probs=190.4
Q ss_pred ceEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CcceEEECCeecCC--CCH
Q 000755 1053 GEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGEIVIDGINISS--IGL 1125 (1300)
Q Consensus 1053 g~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p-----~~G~I~idg~di~~--i~~ 1125 (1300)
..++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++.. .+.
T Consensus 6 ~~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (254)
T PRK14273 6 AIIETENLNLFYTD--FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI 83 (254)
T ss_pred ceEEEeeeEEEeCC--ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence 36999999999975 3599999999999999999999999999999999999997 48999999999853 234
Q ss_pred HHHhcccEEEcCCCCCCcccHHHhcCCCC---C-CC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHH
Q 000755 1126 HDLRSRLSIIPQDPTMFEGTVRNNLDPLE---E-YK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQR 1197 (1300)
Q Consensus 1126 ~~lr~~i~~vpQ~~~lf~gTvr~Nl~~~~---~-~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqr 1197 (1300)
...|++++|+||++.+|..|+++|+.+.. . .. ++.+.++++.+++.+.+. ..+++ .+.+||||||
T Consensus 84 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~---~~~~~----~~~~LSgG~~ 156 (254)
T PRK14273 84 LELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVK---DKLNT----NALSLSGGQQ 156 (254)
T ss_pred HHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhH---HHHhC----CcccCCHHHH
Confidence 56788999999999998899999996421 1 11 345677888888754332 22333 4578999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhH
Q 000755 1198 QLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKL 1276 (1300)
Q Consensus 1198 Qrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l 1276 (1300)
||++|||||+++|++|||||||++||+.+...+.+.|++..+++|||++||+++.+.. ||||++|++|++++.|+++++
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 236 (254)
T PRK14273 157 QRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL 236 (254)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998667899999999999877 999999999999999999999
Q ss_pred HhcCCChH
Q 000755 1277 LENKSSSF 1284 (1300)
Q Consensus 1277 ~~~~~~~f 1284 (1300)
.+++.-.|
T Consensus 237 ~~~~~~~~ 244 (254)
T PRK14273 237 FFNPKNTK 244 (254)
T ss_pred HhCCCChH
Confidence 87654443
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=364.13 Aligned_cols=202 Identities=25% Similarity=0.353 Sum_probs=175.4
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHH---HHhcc
Q 000755 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLH---DLRSR 1131 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~---~lr~~ 1131 (1300)
++++|++++|+++.+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+.. .+|++
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 789999999965434699999999999999999999999999999999999999999999999998766543 36788
Q ss_pred cEEEcCCCCCCcc-cHHHhcCCC---CCC----CHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHH
Q 000755 1132 LSIIPQDPTMFEG-TVRNNLDPL---EEY----KDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLG 1203 (1300)
Q Consensus 1132 i~~vpQ~~~lf~g-Tvr~Nl~~~---~~~----~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LA 1203 (1300)
++|+||++.+|.. |+++|+... ... .++++.++++.+++.+...+.+ .+||||||||++||
T Consensus 82 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~la 150 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALP-----------MQLSGGEQQRVAIA 150 (216)
T ss_pred ceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHHH
Confidence 9999999998864 999998642 111 2346788899998876544433 46899999999999
Q ss_pred HHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhc-cCEEEEEeCCEE
Q 000755 1204 RVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGII 1267 (1300)
Q Consensus 1204 Rall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i 1267 (1300)
|||+++|++|||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++
T Consensus 151 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 151 RAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999998864 37899999999999987 999999999975
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-40 Score=374.59 Aligned_cols=211 Identities=27% Similarity=0.409 Sum_probs=186.4
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccE
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLS 1133 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~ 1133 (1300)
.|+++|++++|+.. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...++++++
T Consensus 4 ~l~~~~l~~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 4 IIEVEDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred eEEEEEEEEEeCCC-CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 58999999999643 35999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEcCCC--CCCcccHHHhcCCCC---CCC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHH
Q 000755 1134 IIPQDP--TMFEGTVRNNLDPLE---EYK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGR 1204 (1300)
Q Consensus 1134 ~vpQ~~--~lf~gTvr~Nl~~~~---~~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LAR 1204 (1300)
|+||+| .++..|+++|+.+.. ..+ ++++.++++.+++.+...+.| ..||||||||++|||
T Consensus 83 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgG~~qrv~lar 151 (274)
T PRK13647 83 LVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP-----------YHLSYGQKKRVAIAG 151 (274)
T ss_pred EEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh-----------hhCCHHHHHHHHHHH
Confidence 999998 577889999996421 122 245678889988876554443 468999999999999
Q ss_pred HHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhH
Q 000755 1205 VLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKL 1276 (1300)
Q Consensus 1205 all~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l 1276 (1300)
||+.+|++|||||||++||+.+...+.+.|++.. +++|||++||+++.+.. ||||++|++|++++.|+++++
T Consensus 152 aL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 152 VLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 9999999999999999999999999999998864 37899999999999976 999999999999999998765
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=379.56 Aligned_cols=213 Identities=27% Similarity=0.424 Sum_probs=185.6
Q ss_pred ceEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhccc
Q 000755 1053 GEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRL 1132 (1300)
Q Consensus 1053 g~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i 1132 (1300)
..|+++|++++|++ ..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...|+++
T Consensus 6 ~~i~i~~l~k~~~~--~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i 82 (306)
T PRK13537 6 APIDFRNVEKRYGD--KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV 82 (306)
T ss_pred ceEEEEeEEEEECC--eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence 46999999999975 35999999999999999999999999999999999999999999999999997654 4578899
Q ss_pred EEEcCCCCCCc-ccHHHhcCCCC---CCCH----HHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHH
Q 000755 1133 SIIPQDPTMFE-GTVRNNLDPLE---EYKD----EEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGR 1204 (1300)
Q Consensus 1133 ~~vpQ~~~lf~-gTvr~Nl~~~~---~~~d----~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LAR 1204 (1300)
||+||++.+|. .|+++|+.++. ..++ +.+.++++.+++.+.. ++++ .+||+|||||++|||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~----~~LS~G~~qrl~la~ 151 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKA-------DAKV----GELSGGMKRRLTLAR 151 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHh-------cCch----hhCCHHHHHHHHHHH
Confidence 99999999886 59999996432 1222 3455677777775432 3333 479999999999999
Q ss_pred HHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHHhc
Q 000755 1205 VLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLEN 1279 (1300)
Q Consensus 1205 all~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~~~ 1279 (1300)
||+.+|++|+|||||+|||+.+...+.+.|++.. +++|||++||+++++.. ||||++|++|++++.|+++++.+.
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999999999875 37899999999999987 999999999999999999999754
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-40 Score=367.21 Aligned_cols=212 Identities=25% Similarity=0.415 Sum_probs=182.2
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHH-hcccE
Q 000755 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDL-RSRLS 1133 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~l-r~~i~ 1133 (1300)
++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+.... |.+++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (236)
T cd03219 1 LEVRGLTKRFGG--LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIG 78 (236)
T ss_pred CeeeeeEEEECC--EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEE
Confidence 468999999974 359999999999999999999999999999999999999999999999999988776554 56799
Q ss_pred EEcCCCCCCcc-cHHHhcCCCC----CC-------------CHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChh
Q 000755 1134 IIPQDPTMFEG-TVRNNLDPLE----EY-------------KDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMG 1195 (1300)
Q Consensus 1134 ~vpQ~~~lf~g-Tvr~Nl~~~~----~~-------------~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgG 1195 (1300)
|+||++.+|.+ |+++|+.... .. ..+.+.++++.+++.+. .......||||
T Consensus 79 ~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG 147 (236)
T cd03219 79 RTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADL-----------ADRPAGELSYG 147 (236)
T ss_pred EEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccch-----------hhCChhhCCHH
Confidence 99999999886 9999985321 10 12234556666665432 33445679999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecCh
Q 000755 1196 QRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSP 1273 (1300)
Q Consensus 1196 qrQrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~ 1273 (1300)
||||++|||||+.+|++|||||||++||+.+.+.+.+.|++.. +++|||++||+++.+.. ||+|++|++|++++.|++
T Consensus 148 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~ 227 (236)
T cd03219 148 QQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTP 227 (236)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCH
Confidence 9999999999999999999999999999999999999998865 57899999999999987 999999999999999999
Q ss_pred hhHHhc
Q 000755 1274 TKLLEN 1279 (1300)
Q Consensus 1274 ~~l~~~ 1279 (1300)
+++.++
T Consensus 228 ~~~~~~ 233 (236)
T cd03219 228 DEVRNN 233 (236)
T ss_pred HHhccC
Confidence 998754
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-40 Score=371.07 Aligned_cols=223 Identities=23% Similarity=0.492 Sum_probs=190.7
Q ss_pred CCCceEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCC-----CCcceEEECCeecCC--
Q 000755 1050 PTHGEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVE-----PTAGEIVIDGINISS-- 1122 (1300)
Q Consensus 1050 p~~g~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~-----p~~G~I~idg~di~~-- 1122 (1300)
|....|+++|++++|++. .+|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++..
T Consensus 9 ~~~~~l~i~nl~~~~~~~--~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~ 86 (269)
T PRK14259 9 SKNIIISLQNVTISYGTF--EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPR 86 (269)
T ss_pred CCCceEEEEeEEEEECCE--EEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 344579999999999753 59999999999999999999999999999999999987 699999999999853
Q ss_pred CCHHHHhcccEEEcCCCCCCcccHHHhcCCCC---CC---CHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhH
Q 000755 1123 IGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLE---EY---KDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQ 1196 (1300)
Q Consensus 1123 i~~~~lr~~i~~vpQ~~~lf~gTvr~Nl~~~~---~~---~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGq 1196 (1300)
.+..++|++++|+||++.+|..|+++|+.+.. .. .++++.++++.+++.+.+. ........+||+||
T Consensus 87 ~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~ 159 (269)
T PRK14259 87 VDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECK-------DKLNESGYSLSGGQ 159 (269)
T ss_pred CCHHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhh-------hhhCCCcccCCHHH
Confidence 45667888999999999999889999997532 11 1345667788887654322 22344567899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhc-cCEEEEEeC-----------
Q 000755 1197 RQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVID-SDMVLLLSH----------- 1264 (1300)
Q Consensus 1197 rQrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~-~D~v~vl~~----------- 1264 (1300)
|||++|||||+++|++|||||||++||+.+.+.+.+.|++..++.|||++||+++.+.. ||+|++|++
T Consensus 160 ~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~ 239 (269)
T PRK14259 160 QQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKV 239 (269)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEecccccccccccc
Confidence 99999999999999999999999999999999999999987667899999999999987 999999996
Q ss_pred CEEEEecChhhHHhcCC
Q 000755 1265 GIIEEYDSPTKLLENKS 1281 (1300)
Q Consensus 1265 G~i~e~g~~~~l~~~~~ 1281 (1300)
|++++.|+++++++++.
T Consensus 240 g~~~~~~~~~~~~~~~~ 256 (269)
T PRK14259 240 GYLVEFNETKKIFNSPK 256 (269)
T ss_pred ceEEEeCCHHHHHhCcC
Confidence 67999999999987554
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-40 Score=369.20 Aligned_cols=223 Identities=30% Similarity=0.447 Sum_probs=189.7
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CcceEEECCeecC--CCCHH
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGEIVIDGINIS--SIGLH 1126 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p-----~~G~I~idg~di~--~i~~~ 1126 (1300)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++. ..+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (253)
T PRK14267 4 AIETVNLRVYYGS--NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPI 81 (253)
T ss_pred eEEEEeEEEEeCC--eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChH
Confidence 5899999999975 3599999999999999999999999999999999999987 4999999999987 45556
Q ss_pred HHhcccEEEcCCCCCCcc-cHHHhcCCC---CCC--C----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhH
Q 000755 1127 DLRSRLSIIPQDPTMFEG-TVRNNLDPL---EEY--K----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQ 1196 (1300)
Q Consensus 1127 ~lr~~i~~vpQ~~~lf~g-Tvr~Nl~~~---~~~--~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGq 1196 (1300)
.+|++++|+||++.+|.. |+++|+... ... . ++++.++++.+++.+.+.. .......+|||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~ 154 (253)
T PRK14267 82 EVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKD-------RLNDYPSNLSGGQ 154 (253)
T ss_pred HHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhh-------hhccChhhCCHHH
Confidence 778899999999999976 999998632 111 1 2346677888877543321 2234567899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhh
Q 000755 1197 RQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTK 1275 (1300)
Q Consensus 1197 rQrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~ 1275 (1300)
|||++|||||+++|++|||||||++||+.+.+.+.+.|++..+++|||++||+++.+.. ||+|++|++|++++.|++++
T Consensus 155 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 234 (253)
T PRK14267 155 RQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRK 234 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999987667999999999999877 99999999999999999999
Q ss_pred HHhcCCChHH
Q 000755 1276 LLENKSSSFA 1285 (1300)
Q Consensus 1276 l~~~~~~~f~ 1285 (1300)
+.+++...+.
T Consensus 235 ~~~~~~~~~~ 244 (253)
T PRK14267 235 VFENPEHELT 244 (253)
T ss_pred HHhCCCcHHH
Confidence 9865443343
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-40 Score=366.40 Aligned_cols=220 Identities=25% Similarity=0.408 Sum_probs=188.2
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEE
Q 000755 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSI 1134 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~ 1134 (1300)
++++|++++|++. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+...+|++++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (242)
T cd03295 1 IEFENVTKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGY 79 (242)
T ss_pred CEEEEEEEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEE
Confidence 4689999999753 359999999999999999999999999999999999999999999999999988777788889999
Q ss_pred EcCCCCCCc-ccHHHhcCCCC---CCC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHH
Q 000755 1135 IPQDPTMFE-GTVRNNLDPLE---EYK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVL 1206 (1300)
Q Consensus 1135 vpQ~~~lf~-gTvr~Nl~~~~---~~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARal 1206 (1300)
+||++.+|. .|+++|+.... ... ++++.++++.+++.+. ......+.+||||||||++||||+
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~---------~~~~~~~~~LS~G~~qrv~laral 150 (242)
T cd03295 80 VIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPA---------EFADRYPHELSGGQQQRVGVARAL 150 (242)
T ss_pred EccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcH---------HHHhcChhhCCHHHHHHHHHHHHH
Confidence 999999886 59999986421 112 2356677888877530 012234568999999999999999
Q ss_pred ccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHHhcCCCh
Q 000755 1207 LKKSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENKSSS 1283 (1300)
Q Consensus 1207 l~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~~~~~~~ 1283 (1300)
+++|++|||||||++||+.+.+.+.+.|++..+ ++|||++||+++.+.. ||+|++|++|++++.|+++++.+++...
T Consensus 151 ~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~ 230 (242)
T cd03295 151 AADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSPAND 230 (242)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcCCCCh
Confidence 999999999999999999999999999998653 7899999999998876 9999999999999999999987654433
Q ss_pred H
Q 000755 1284 F 1284 (1300)
Q Consensus 1284 f 1284 (1300)
+
T Consensus 231 ~ 231 (242)
T cd03295 231 F 231 (242)
T ss_pred H
Confidence 3
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=370.00 Aligned_cols=222 Identities=24% Similarity=0.417 Sum_probs=191.1
Q ss_pred CCceEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CcceEEECCeecCC--C
Q 000755 1051 THGEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGEIVIDGINISS--I 1123 (1300)
Q Consensus 1051 ~~g~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p-----~~G~I~idg~di~~--i 1123 (1300)
+.+.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++.. .
T Consensus 16 ~~~~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 16 TEIKMRARDVSVFYGE--KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CCceEEEEeEEEEECC--EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 3568999999999975 3599999999999999999999999999999999999975 89999999999864 3
Q ss_pred CHHHHhcccEEEcCCCCCCcccHHHhcCCCC---CC--C----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCCh
Q 000755 1124 GLHDLRSRLSIIPQDPTMFEGTVRNNLDPLE---EY--K----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSM 1194 (1300)
Q Consensus 1124 ~~~~lr~~i~~vpQ~~~lf~gTvr~Nl~~~~---~~--~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSg 1194 (1300)
+...+|++++|+||++.+|..|+++|+.+.. .. . ++++.++++.+++.+.+.. .....+.+|||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSg 166 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKD-------RLHEPGTGLSG 166 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhH-------HhhCCcccCCH
Confidence 4556788999999999999889999996421 11 1 2446778888888654321 22345678999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecCh
Q 000755 1195 GQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSP 1273 (1300)
Q Consensus 1195 GqrQrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~ 1273 (1300)
|||||++|||||+.+|++|||||||++||+.+...+.+.|++..++.|||++||+++.+.. ||+|++|++|++++.|++
T Consensus 167 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~ 246 (267)
T PRK14235 167 GQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDT 246 (267)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999987667899999999999977 999999999999999999
Q ss_pred hhHHhcCC
Q 000755 1274 TKLLENKS 1281 (1300)
Q Consensus 1274 ~~l~~~~~ 1281 (1300)
+++..++.
T Consensus 247 ~~~~~~~~ 254 (267)
T PRK14235 247 EKMFTNPD 254 (267)
T ss_pred HHHHhCCC
Confidence 99986544
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-40 Score=365.45 Aligned_cols=214 Identities=28% Similarity=0.426 Sum_probs=185.0
Q ss_pred EEEEeeeeeeCCCC--CcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHH---Hh
Q 000755 1055 VDILNLQVRYAPHL--PLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHD---LR 1129 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~--~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~---lr 1129 (1300)
|+++|++++|++.. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+..+ .|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999997531 26999999999999999999999999999999999999999999999999998765443 47
Q ss_pred cccEEEcCCCCCCc-ccHHHhcCCC---CCCC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHH
Q 000755 1130 SRLSIIPQDPTMFE-GTVRNNLDPL---EEYK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVC 1201 (1300)
Q Consensus 1130 ~~i~~vpQ~~~lf~-gTvr~Nl~~~---~~~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~ 1201 (1300)
++++|+||++.+|. .|+++|+... .... ++++.++++..++.+...+ ...+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADA-----------YPAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhc-----------ChhhCCHHHHHHHH
Confidence 78999999999987 5999998532 1122 3456778888887654433 23578999999999
Q ss_pred HHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHHh
Q 000755 1202 LGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLE 1278 (1300)
Q Consensus 1202 LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~~ 1278 (1300)
||||++++|++|||||||++||+.+...+.+.|++..+ ++|||++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 99999999999999999999999999999999998642 7899999999999987 99999999999999999998875
Q ss_pred c
Q 000755 1279 N 1279 (1300)
Q Consensus 1279 ~ 1279 (1300)
+
T Consensus 231 ~ 231 (233)
T cd03258 231 N 231 (233)
T ss_pred C
Confidence 4
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-40 Score=373.74 Aligned_cols=214 Identities=27% Similarity=0.416 Sum_probs=189.4
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccE
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLS 1133 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~ 1133 (1300)
.++++||+++|+...+++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...++++++
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 58999999999754456999999999999999999999999999999999999999999999999998888778888999
Q ss_pred EEcCCC--CCCcccHHHhcCCCC---CCC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHH
Q 000755 1134 IIPQDP--TMFEGTVRNNLDPLE---EYK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGR 1204 (1300)
Q Consensus 1134 ~vpQ~~--~lf~gTvr~Nl~~~~---~~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LAR 1204 (1300)
|+||++ .++..|+++|+.... ..+ ++++.++++.+++.+.+...+ ..||||||||++|||
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qrv~lar 153 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP-----------HRLSGGQKQRVAIAG 153 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHHH
Confidence 999998 456779999996421 122 234677888888877655544 468999999999999
Q ss_pred HHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhccCEEEEEeCCEEEEecChhhHHh
Q 000755 1205 VLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLE 1278 (1300)
Q Consensus 1205 all~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~~D~v~vl~~G~i~e~g~~~~l~~ 1278 (1300)
||+.+|+||||||||++||+.+.+.+.+.|++..+ ++|||++||+++.+..||+|++|++|++++.|+++++..
T Consensus 154 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13635 154 VLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFK 229 (279)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999999999998753 689999999999998899999999999999999998875
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=382.50 Aligned_cols=216 Identities=24% Similarity=0.408 Sum_probs=189.3
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccE
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLS 1133 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~ 1133 (1300)
.|+++|++++|+. ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+. .+++++
T Consensus 2 ~L~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~ 77 (353)
T PRK10851 2 SIEIANIKKSFGR--TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVG 77 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEE
Confidence 4889999999975 359999999999999999999999999999999999999999999999999987653 456899
Q ss_pred EEcCCCCCCcc-cHHHhcCCCC-------CCC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHH
Q 000755 1134 IIPQDPTMFEG-TVRNNLDPLE-------EYK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVC 1201 (1300)
Q Consensus 1134 ~vpQ~~~lf~g-Tvr~Nl~~~~-------~~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~ 1201 (1300)
|+||++.+|+. |+++|+.+.. ..+ ++++.++++.+++.+...+.| ..||||||||++
T Consensus 78 ~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgGq~QRva 146 (353)
T PRK10851 78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----------AQLSGGQKQRVA 146 (353)
T ss_pred EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHH
Confidence 99999999975 9999997431 112 245677888888876554433 578999999999
Q ss_pred HHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHHh
Q 000755 1202 LGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLE 1278 (1300)
Q Consensus 1202 LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~~ 1278 (1300)
|||||+++|++|+|||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||||++|++|++++.|+|+++++
T Consensus 147 lArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~ 226 (353)
T PRK10851 147 LARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWR 226 (353)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999998653 6899999999999887 99999999999999999999998
Q ss_pred cCCChH
Q 000755 1279 NKSSSF 1284 (1300)
Q Consensus 1279 ~~~~~f 1284 (1300)
++...|
T Consensus 227 ~p~~~~ 232 (353)
T PRK10851 227 EPATRF 232 (353)
T ss_pred CccchH
Confidence 766544
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=361.05 Aligned_cols=202 Identities=24% Similarity=0.373 Sum_probs=174.6
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEE
Q 000755 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSI 1134 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~ 1134 (1300)
++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+ ..+++++|
T Consensus 1 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~--~~~~~i~~ 76 (213)
T cd03259 1 LELKGLSKTYGS--VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP--PERRNIGM 76 (213)
T ss_pred CeeeeeEEEeCC--eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc--hhhccEEE
Confidence 478999999975 35999999999999999999999999999999999999999999999999987644 24678999
Q ss_pred EcCCCCCCc-ccHHHhcCCCC---CCC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHH
Q 000755 1135 IPQDPTMFE-GTVRNNLDPLE---EYK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVL 1206 (1300)
Q Consensus 1135 vpQ~~~lf~-gTvr~Nl~~~~---~~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARal 1206 (1300)
+||++.+|. .|+++|+.... ... ++++.++++.+++.+...+. ..+||||||||++|||||
T Consensus 77 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrl~la~al 145 (213)
T cd03259 77 VFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRY-----------PHELSGGQQQRVALARAL 145 (213)
T ss_pred EcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcC-----------hhhCCHHHHHHHHHHHHH
Confidence 999998886 59999986421 111 23467788888876554433 357899999999999999
Q ss_pred ccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc--CCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEec
Q 000755 1207 LKKSKVLVLDEATASVDTATDNLIQQTLRQHF--SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYD 1271 (1300)
Q Consensus 1207 l~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g 1271 (1300)
+++|++|||||||++||+.+...+.+.|++.. .++|||++||+++.+.+ ||+|++|++|++++.|
T Consensus 146 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 146 AREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999864 37899999999999877 9999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-40 Score=383.43 Aligned_cols=219 Identities=22% Similarity=0.405 Sum_probs=192.0
Q ss_pred CceEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCc--ceEEECCeecCCCCHHHHh
Q 000755 1052 HGEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTA--GEIVIDGINISSIGLHDLR 1129 (1300)
Q Consensus 1052 ~g~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~--G~I~idg~di~~i~~~~lr 1129 (1300)
.|.|+++|++++|+.. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.+||.++...+.. +
T Consensus 3 ~~~l~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~--~ 78 (362)
T TIGR03258 3 CGGIRIDHLRVAYGAN--TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPH--K 78 (362)
T ss_pred ceEEEEEEEEEEECCe--EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHH--H
Confidence 4679999999999753 59999999999999999999999999999999999999999 9999999999876653 5
Q ss_pred cccEEEcCCCCCCcc-cHHHhcCCC---CCCC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHH
Q 000755 1130 SRLSIIPQDPTMFEG-TVRNNLDPL---EEYK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVC 1201 (1300)
Q Consensus 1130 ~~i~~vpQ~~~lf~g-Tvr~Nl~~~---~~~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~ 1201 (1300)
++++|++|++.+|+. ||++|+.+. ...+ ++++.++++.+++.+...+.| .+||||||||++
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRva 147 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLP-----------AQLSGGMQQRIA 147 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCCh-----------hhCCHHHHHHHH
Confidence 689999999999976 999999642 1222 234677888888877655544 468999999999
Q ss_pred HHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC---CcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHH
Q 000755 1202 LGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS---DCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLL 1277 (1300)
Q Consensus 1202 LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~---~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~ 1277 (1300)
|||||+++|++|+|||||++||+.+...+.+.|++..+ +.|+|+|||+++++.. ||||++|++|++++.|+|+++.
T Consensus 148 LARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 148 IARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999987653 6899999999999877 9999999999999999999999
Q ss_pred hcCCChHH
Q 000755 1278 ENKSSSFA 1285 (1300)
Q Consensus 1278 ~~~~~~f~ 1285 (1300)
+++...|.
T Consensus 228 ~~p~~~~~ 235 (362)
T TIGR03258 228 DAPADGFA 235 (362)
T ss_pred hCcCcHHH
Confidence 87765553
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-40 Score=386.52 Aligned_cols=220 Identities=25% Similarity=0.421 Sum_probs=193.3
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccE
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLS 1133 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~ 1133 (1300)
.++++|++++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++..++..+++++++
T Consensus 3 ~L~~~nls~~y~~--~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig 80 (402)
T PRK09536 3 MIDVSDLSVEFGD--TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVA 80 (402)
T ss_pred eEEEeeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceE
Confidence 4899999999975 36999999999999999999999999999999999999999999999999999988889999999
Q ss_pred EEcCCCCC-CcccHHHhcCCCC-----------CCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHH
Q 000755 1134 IIPQDPTM-FEGTVRNNLDPLE-----------EYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVC 1201 (1300)
Q Consensus 1134 ~vpQ~~~l-f~gTvr~Nl~~~~-----------~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~ 1201 (1300)
|+||++.+ |..|+++|+.... ...++.+.++++.+++.+...+ ...+||||||||++
T Consensus 81 ~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~-----------~~~~LSgGerQRv~ 149 (402)
T PRK09536 81 SVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADR-----------PVTSLSGGERQRVL 149 (402)
T ss_pred EEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHHH
Confidence 99999987 5679999985421 1123457889999998765433 23578999999999
Q ss_pred HHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHHhc
Q 000755 1202 LGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLEN 1279 (1300)
Q Consensus 1202 LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~~~ 1279 (1300)
|||||+++|++|||||||++||+.+...+.+.|++.. .+.|||+++|+++.+.. |||+++|++|++++.|+|+++++.
T Consensus 150 IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~ 229 (402)
T PRK09536 150 LARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTA 229 (402)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCc
Confidence 9999999999999999999999999999999999875 47899999999999976 999999999999999999999853
Q ss_pred CCChHHHHH
Q 000755 1280 KSSSFAQLV 1288 (1300)
Q Consensus 1280 ~~~~f~~l~ 1288 (1300)
..+.+++
T Consensus 230 --~~l~~~~ 236 (402)
T PRK09536 230 --DTLRAAF 236 (402)
T ss_pred --HHHHHHh
Confidence 2344444
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-39 Score=365.68 Aligned_cols=237 Identities=37% Similarity=0.636 Sum_probs=204.4
Q ss_pred HHHHHhcCCCCCcccccCCCCCCCcceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccc
Q 000755 590 RIASFLCLDDLQSDVVEKHPRGSSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEV 669 (1300)
Q Consensus 590 RI~~fL~~~e~~~~~~~~~~~~~~~~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~ 669 (1300)
.+.+.+..+..+++ ..+ .......|+++|+++.+ +++|+|+||+|++|++++|+|+||||||||+++|+|.+
T Consensus 16 ~~~~~~~~~~~~~~-~~~--~~~~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~ 87 (282)
T cd03291 16 GFGELLEKAKQENN-DRK--HSSDDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGEL 87 (282)
T ss_pred HHHHHHhccccccc-ccc--cCCCCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45555655433222 122 22345679999999962 46999999999999999999999999999999999999
Q ss_pred cCCccEEEEcCeEEEEecCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHH
Q 000755 670 PKISGTLKLCGTKAYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQR 749 (1300)
Q Consensus 670 ~~~~G~i~~~g~~ayv~Q~~~l~~~Ti~eNI~fg~~~~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqR 749 (1300)
+|++|+|.++|.++|++|++++++.|++||+.++......++.++++++++.+.++.+|.+.++.+++++.+||||||||
T Consensus 88 ~p~~G~I~i~g~i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qr 167 (282)
T cd03291 88 EPSEGKIKHSGRISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRAR 167 (282)
T ss_pred CCCCcEEEECCEEEEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHH
Confidence 99999999999999999999999999999999986655567778888889999999999999999999999999999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHh
Q 000755 750 IQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILN 829 (1300)
Q Consensus 750 iaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 829 (1300)
++||||++++|+++||||||++||+.+...+.+.++..+.+++|+|++||+++.+..||++++|++|++++.|+.+++..
T Consensus 168 v~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 247 (282)
T cd03291 168 ISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQS 247 (282)
T ss_pred HHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999988887655555556799999999999998899999999999999999999876
Q ss_pred cCchH
Q 000755 830 SGTDF 834 (1300)
Q Consensus 830 ~~~~~ 834 (1300)
...++
T Consensus 248 ~~~~~ 252 (282)
T cd03291 248 LRPDF 252 (282)
T ss_pred cchHH
Confidence 44433
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-40 Score=366.28 Aligned_cols=211 Identities=28% Similarity=0.413 Sum_probs=181.6
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCH---HHHhcc
Q 000755 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGL---HDLRSR 1131 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~---~~lr~~ 1131 (1300)
|+++|++++|+.+ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++..++. ..+|++
T Consensus 2 l~~~~l~~~~~~~-~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 2 LEVENLSKVYPNG-KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred eEEEeeeeecCCC-cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 6899999999722 459999999999999999999999999999999999999999999999999877654 346788
Q ss_pred cEEEcCCCCCCc-ccHHHhcCCCC------------C---CCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChh
Q 000755 1132 LSIIPQDPTMFE-GTVRNNLDPLE------------E---YKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMG 1195 (1300)
Q Consensus 1132 i~~vpQ~~~lf~-gTvr~Nl~~~~------------~---~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgG 1195 (1300)
++|+||++.+|. .|+++|+.... . ..++++.++++.+++.+... ....+||||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG 149 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAY-----------QRADQLSGG 149 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhc-----------CCcccCCHH
Confidence 999999998886 59999985311 0 11235667778777754332 345679999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc--CCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecC
Q 000755 1196 QRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF--SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDS 1272 (1300)
Q Consensus 1196 qrQrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~ 1272 (1300)
||||++|||||+.+|++|||||||++||+.+.+.+.+.|++.. .++|||++||+++.+.+ ||+|++|++|++++.|+
T Consensus 150 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 229 (243)
T TIGR02315 150 QQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGA 229 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCC
Confidence 9999999999999999999999999999999999999999864 26899999999999976 99999999999999999
Q ss_pred hhhHH
Q 000755 1273 PTKLL 1277 (1300)
Q Consensus 1273 ~~~l~ 1277 (1300)
++++.
T Consensus 230 ~~~~~ 234 (243)
T TIGR02315 230 PSELD 234 (243)
T ss_pred HHHhC
Confidence 98874
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-40 Score=383.36 Aligned_cols=206 Identities=27% Similarity=0.403 Sum_probs=181.8
Q ss_pred CcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHH----hcccEEEcCCCCCCcc
Q 000755 1069 PLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDL----RSRLSIIPQDPTMFEG 1144 (1300)
Q Consensus 1069 ~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~l----r~~i~~vpQ~~~lf~g 1144 (1300)
..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|++||.++...+..++ |++++|+||++.+|+.
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 358999999999999999999999999999999999999999999999999999888877 7789999999999975
Q ss_pred -cHHHhcCCCC---CCC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 000755 1145 -TVRNNLDPLE---EYK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLD 1216 (1300)
Q Consensus 1145 -Tvr~Nl~~~~---~~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~~iLlLD 1216 (1300)
||++|+.+.. ..+ .+++.++++.++|.++..+.| .+||||||||++|||||+++|+|||||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----------~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYP-----------DELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCCh-----------hhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999986421 122 345677888888876654443 578999999999999999999999999
Q ss_pred CCCcCCCHHHHHHHHHHHHHhc--CCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHHhcCCChHH
Q 000755 1217 EATASVDTATDNLIQQTLRQHF--SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENKSSSFA 1285 (1300)
Q Consensus 1217 EpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~~~~~~~f~ 1285 (1300)
|||++||+.+.+.+++.+.+.. .++|||+|||+++++.. ||||++|++|++++.|+|+++++++...|.
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~~ 226 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYV 226 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHHH
Confidence 9999999999999999998764 37899999999999877 999999999999999999999987655443
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=354.98 Aligned_cols=199 Identities=23% Similarity=0.411 Sum_probs=182.0
Q ss_pred EEEEeeeeeeCCCC---CcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcc
Q 000755 1055 VDILNLQVRYAPHL---PLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSR 1131 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~---~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~ 1131 (1300)
++++||+++|++.. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+|| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 57899999997642 3699999999999999999999999999999999999999999999998 6
Q ss_pred cEEEcCCCCCCcccHHHhcCCCCCCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCC
Q 000755 1132 LSIIPQDPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSK 1211 (1300)
Q Consensus 1132 i~~vpQ~~~lf~gTvr~Nl~~~~~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~~ 1211 (1300)
++|+||+|.+|++|+++|+.+.....+++.+++++.+++.+++...|.|+++.+.+.+.+||+|||||++||||++.+|+
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~ 147 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDAD 147 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998765556667888899999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCcCCCHHHHHHHHH-HHHHhc-CCcEEEEEeCChhhhhccCEEEEEeCCE
Q 000755 1212 VLVLDEATASVDTATDNLIQQ-TLRQHF-SDCTVITIAHRITSVIDSDMVLLLSHGI 1266 (1300)
Q Consensus 1212 iLlLDEpTs~lD~~t~~~i~~-~l~~~~-~~~Tvi~iaHrl~~i~~~D~v~vl~~G~ 1266 (1300)
+++|||||++||+.+.+.+.+ .+++.. ++.|||++||+++.+..||+|++|++|+
T Consensus 148 llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 148 IYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 999999999999999888877 566554 3689999999999998899999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=382.37 Aligned_cols=217 Identities=24% Similarity=0.380 Sum_probs=192.0
Q ss_pred ceEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhccc
Q 000755 1053 GEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRL 1132 (1300)
Q Consensus 1053 g~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i 1132 (1300)
..++++|++++|+. ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+.+ ++++
T Consensus 13 ~~L~l~~l~~~~~~--~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 88 (375)
T PRK09452 13 PLVELRGISKSFDG--KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV 88 (375)
T ss_pred ceEEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 46999999999975 3589999999999999999999999999999999999999999999999999877654 4689
Q ss_pred EEEcCCCCCCcc-cHHHhcCCCC---CCC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHH
Q 000755 1133 SIIPQDPTMFEG-TVRNNLDPLE---EYK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGR 1204 (1300)
Q Consensus 1133 ~~vpQ~~~lf~g-Tvr~Nl~~~~---~~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LAR 1204 (1300)
+|++|++.+|+. ||++|+.+.. ..+ ++++.++++.+++.+...+.| ..||||||||++|||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QRVaLAR 157 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIAR 157 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999976 9999996421 122 235677888888877766655 468999999999999
Q ss_pred HHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHHhcCC
Q 000755 1205 VLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENKS 1281 (1300)
Q Consensus 1205 all~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~~~~~ 1281 (1300)
||+++|++|+|||||++||..+++.+.+.|++..+ +.|+|+|||+.+++.. ||+|++|++|+|++.|+|+++++++.
T Consensus 158 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p~ 237 (375)
T PRK09452 158 AVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPK 237 (375)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 99999999999999999999999999999998653 6899999999999877 99999999999999999999998876
Q ss_pred ChH
Q 000755 1282 SSF 1284 (1300)
Q Consensus 1282 ~~f 1284 (1300)
..|
T Consensus 238 ~~~ 240 (375)
T PRK09452 238 NLF 240 (375)
T ss_pred cHH
Confidence 555
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=354.78 Aligned_cols=190 Identities=36% Similarity=0.454 Sum_probs=165.0
Q ss_pred eEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe--------EEEEec
Q 000755 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--------KAYVAQ 687 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~--------~ayv~Q 687 (1300)
.+++++++.+|.. ..+|+|+||+|++||+++|+|||||||||||++|+|+.+|++|+|.++|. ++||+|
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ 79 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQ 79 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEec
Confidence 5889999999973 67999999999999999999999999999999999999999999999884 699999
Q ss_pred CCcCCC-CCHHHHHhcCCCCC-------HHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHHHHHccC
Q 000755 688 SPWIQS-GNIEDNILFGKPMD-------REKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQD 759 (1300)
Q Consensus 688 ~~~l~~-~Ti~eNI~fg~~~~-------~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLARAly~~ 759 (1300)
++-++. -||+||+.||.+.. +++..+.++.++|...-+..| ..||||||||+||||||..+
T Consensus 80 ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P-----------~qLSGGMrQRVaiARAL~~~ 148 (248)
T COG1116 80 EDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP-----------HQLSGGMRQRVAIARALATR 148 (248)
T ss_pred cCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc-----------cccChHHHHHHHHHHHHhcC
Confidence 988765 69999999987641 346777888888877666555 57999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCCCcc-ccCCEEEEEeC--CeEE
Q 000755 760 ADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-RSKTVIYVTHQVEFL-PAADLILVMKD--GKIT 819 (1300)
Q Consensus 760 ~~illLDep~saLD~~t~~~i~~~~~~~~l-~~~TvIlvtH~~~~l-~~~d~i~~l~~--G~i~ 819 (1300)
|+|+||||||+|||+.|+.++-+.++.-+. .++|+++|||+++.. .-+|||++|.+ |+|.
T Consensus 149 P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 149 PKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred CCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 999999999999999999988766554433 369999999999874 55999999999 5553
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=373.63 Aligned_cols=213 Identities=29% Similarity=0.407 Sum_probs=184.0
Q ss_pred EEEEeeeeeeCCCC---CcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCC----CCHHH
Q 000755 1055 VDILNLQVRYAPHL---PLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISS----IGLHD 1127 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~---~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~----i~~~~ 1127 (1300)
|+++|++++|++.. +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|++||.++.. .....
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997432 259999999999999999999999999999999999999999999999999863 33566
Q ss_pred HhcccEEEcCCC--CCCcccHHHhcCCCC---CCCH----HHHHHHHHHcCCcH-HHHhhcCCCccccccCCCCCChhHH
Q 000755 1128 LRSRLSIIPQDP--TMFEGTVRNNLDPLE---EYKD----EEIWEALDKCQLGD-EVRNKEGKLDSRVTENGENWSMGQR 1197 (1300)
Q Consensus 1128 lr~~i~~vpQ~~--~lf~gTvr~Nl~~~~---~~~d----~~i~~~l~~~~l~~-~i~~~~~gLdt~v~e~G~~LSgGqr 1197 (1300)
+|++++|++|+| .+|..|+.+|+.+.. ..+. +++.++++.+++.+ +. .....+||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~~LSgGqk 150 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFW-----------EKSPFELSGGQM 150 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhc-----------cCCcccCCHHHH
Confidence 888999999998 688899999996432 1222 34667788888742 22 234468999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhh
Q 000755 1198 QLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTK 1275 (1300)
Q Consensus 1198 Qrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~ 1275 (1300)
||++|||||+.+|++|||||||++||+.+...+.+.|++.. .+.|||++||+++.+.. ||||++|++|++++.|++++
T Consensus 151 qrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~ 230 (288)
T PRK13643 151 RRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSD 230 (288)
T ss_pred HHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999998764 47899999999999876 99999999999999999999
Q ss_pred HHh
Q 000755 1276 LLE 1278 (1300)
Q Consensus 1276 l~~ 1278 (1300)
+..
T Consensus 231 ~~~ 233 (288)
T PRK13643 231 VFQ 233 (288)
T ss_pred HHc
Confidence 875
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=373.21 Aligned_cols=216 Identities=25% Similarity=0.398 Sum_probs=183.6
Q ss_pred eEEEEeeeeeeCCCC---CcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCC----CHH
Q 000755 1054 EVDILNLQVRYAPHL---PLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSI----GLH 1126 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~---~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i----~~~ 1126 (1300)
.|+++|++++|++.. +++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++... +..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999996432 3599999999999999999999999999999999999999999999999998653 345
Q ss_pred HHhcccEEEcCCC--CCCcccHHHhcCCCC---CCCH----HHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHH
Q 000755 1127 DLRSRLSIIPQDP--TMFEGTVRNNLDPLE---EYKD----EEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQR 1197 (1300)
Q Consensus 1127 ~lr~~i~~vpQ~~--~lf~gTvr~Nl~~~~---~~~d----~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqr 1197 (1300)
.+|++++|+||+| .+|+.|+++|+.+.. ..+. +.+.++++.+++... .....+.+||||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~----------~~~~~~~~LSgGq~ 151 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRD----------VMSQSPFQMSGGQM 151 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChh----------hhhCCcccCCHHHH
Confidence 6888999999998 578889999996421 1232 334556666666411 12235578999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc--CCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChh
Q 000755 1198 QLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF--SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPT 1274 (1300)
Q Consensus 1198 Qrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~ 1274 (1300)
||++|||||+.+|+||||||||++||+.+...+.+.|++.. .++|||+|||+++.+.. ||||++|++|++++.|+++
T Consensus 152 qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~ 231 (286)
T PRK13646 152 RKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPK 231 (286)
T ss_pred HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999864 37899999999999876 9999999999999999999
Q ss_pred hHHhc
Q 000755 1275 KLLEN 1279 (1300)
Q Consensus 1275 ~l~~~ 1279 (1300)
+++++
T Consensus 232 ~~~~~ 236 (286)
T PRK13646 232 ELFKD 236 (286)
T ss_pred HHHhC
Confidence 98754
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=359.89 Aligned_cols=212 Identities=24% Similarity=0.436 Sum_probs=179.3
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHH-hcccE
Q 000755 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDL-RSRLS 1133 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~l-r~~i~ 1133 (1300)
|+++|++++|+.. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+..+. |++++
T Consensus 1 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (222)
T cd03224 1 LEVENLNAGYGKS--QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIG 78 (222)
T ss_pred CEEeeEEeecCCe--eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeE
Confidence 5789999999753 59999999999999999999999999999999999999999999999999987776654 56799
Q ss_pred EEcCCCCCCcc-cHHHhcCCCCC-C-C---HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHc
Q 000755 1134 IIPQDPTMFEG-TVRNNLDPLEE-Y-K---DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLL 1207 (1300)
Q Consensus 1134 ~vpQ~~~lf~g-Tvr~Nl~~~~~-~-~---d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall 1207 (1300)
|+||++.+|.+ |+++|+.+... . . .+++.++++.++ +++........+||||||||++|||||+
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~laral~ 148 (222)
T cd03224 79 YVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFP----------RLKERRKQLAGTLSGGEQQMLAIARALM 148 (222)
T ss_pred EeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHH----------hhhhhhhCchhhCCHHHHHHHHHHHHHh
Confidence 99999999886 99999864321 1 1 122333444431 1222233455789999999999999999
Q ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHHh
Q 000755 1208 KKSKVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLE 1278 (1300)
Q Consensus 1208 ~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~~ 1278 (1300)
++|++|||||||++||+.+.+.+.+.|++.. .++|||++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 149 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 149 SRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred cCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 9999999999999999999999999998865 47899999999999877 99999999999999999888753
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=359.23 Aligned_cols=208 Identities=26% Similarity=0.381 Sum_probs=180.7
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEE
Q 000755 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSI 1134 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~ 1134 (1300)
|+++|++++|++ .++|+|+||++++||++||+|+||||||||+++|+|+++|++|+|.++|.++... ..+++++++|
T Consensus 1 i~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYGD--FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIGI 77 (220)
T ss_pred CEEEEEEEEECC--EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEEE
Confidence 578999999975 3599999999999999999999999999999999999999999999999988653 3567788999
Q ss_pred EcCCCCCCcc-cHHHhcCCC---CCC----CHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHH
Q 000755 1135 IPQDPTMFEG-TVRNNLDPL---EEY----KDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVL 1206 (1300)
Q Consensus 1135 vpQ~~~lf~g-Tvr~Nl~~~---~~~----~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARal 1206 (1300)
+||++.+++. |+++|+... ... .++++.++++.+++.+..... ...||||||||++||||+
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qr~~la~al 146 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRL-----------VKTYSGGMRRRLEIARSL 146 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-----------hhhCCHHHHHHHHHHHHH
Confidence 9999988875 999998531 111 234567788888886654433 246899999999999999
Q ss_pred ccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhH
Q 000755 1207 LKKSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKL 1276 (1300)
Q Consensus 1207 l~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l 1276 (1300)
+.+|++|||||||++||+.+.+.+.+.|++..+ ++|||++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 147 VHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 999999999999999999999999999988643 6899999999999987 999999999999999988764
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=384.05 Aligned_cols=217 Identities=21% Similarity=0.349 Sum_probs=188.9
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccE
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLS 1133 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~ 1133 (1300)
.|+++|++++|++. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+.. +++++
T Consensus 3 ~l~i~~l~~~~~~~--~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i~ 78 (369)
T PRK11000 3 SVTLRNVTKAYGDV--VISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGVG 78 (369)
T ss_pred EEEEEEEEEEeCCe--EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCEE
Confidence 48999999999753 599999999999999999999999999999999999999999999999999876543 46799
Q ss_pred EEcCCCCCCcc-cHHHhcCCCC---CCC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHH
Q 000755 1134 IIPQDPTMFEG-TVRNNLDPLE---EYK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRV 1205 (1300)
Q Consensus 1134 ~vpQ~~~lf~g-Tvr~Nl~~~~---~~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARa 1205 (1300)
|+||++.+|.. |+++|+.+.. ..+ ++++.++++.+++.+...+.+ .+||||||||++||||
T Consensus 79 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~-----------~~LSgGq~QRvaLAra 147 (369)
T PRK11000 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGRT 147 (369)
T ss_pred EEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999975 9999996421 122 245677888888866544433 5689999999999999
Q ss_pred HccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHHhcCCC
Q 000755 1206 LLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENKSS 1282 (1300)
Q Consensus 1206 ll~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~~~~~~ 1282 (1300)
|+++|++|||||||++||+.+.+.+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|++++.|+|+++.+++..
T Consensus 148 L~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p~~ 227 (369)
T PRK11000 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAN 227 (369)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccc
Confidence 9999999999999999999999999999988643 6899999999999887 999999999999999999999887665
Q ss_pred hHH
Q 000755 1283 SFA 1285 (1300)
Q Consensus 1283 ~f~ 1285 (1300)
.|.
T Consensus 228 ~~~ 230 (369)
T PRK11000 228 RFV 230 (369)
T ss_pred HHH
Confidence 543
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=366.47 Aligned_cols=223 Identities=24% Similarity=0.398 Sum_probs=189.1
Q ss_pred ceEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CcceEEECCeecCCCC--H
Q 000755 1053 GEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGEIVIDGINISSIG--L 1125 (1300)
Q Consensus 1053 g~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p-----~~G~I~idg~di~~i~--~ 1125 (1300)
..|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++...+ .
T Consensus 11 ~~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 11 PQIKVENLNLWYGE--KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred eeEEEeeeEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 36999999999974 3599999999999999999999999999999999999985 7999999999986432 3
Q ss_pred HHHhcccEEEcCCCCCCcccHHHhcCCCC---CCCH----HHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHH
Q 000755 1126 HDLRSRLSIIPQDPTMFEGTVRNNLDPLE---EYKD----EEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQ 1198 (1300)
Q Consensus 1126 ~~lr~~i~~vpQ~~~lf~gTvr~Nl~~~~---~~~d----~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQ 1198 (1300)
..+|+.++|+||++.+|..|+++|+.+.. ..+. +.+.++++.+++.+.+. .........|||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~q 161 (258)
T PRK14268 89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETS-------DRLKSPALSLSGGQQQ 161 (258)
T ss_pred HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCChhhCCHHHHH
Confidence 45678899999999999899999996421 1222 34667888887753221 1223455789999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHH
Q 000755 1199 LVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLL 1277 (1300)
Q Consensus 1199 rl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~ 1277 (1300)
|++|||||+.+|++|||||||++||+.+...+.+.|++..+++|||++||+++.+.+ ||+|++|++|++++.|+++++.
T Consensus 162 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 162 RLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999987667999999999999977 9999999999999999999998
Q ss_pred hcCCChH
Q 000755 1278 ENKSSSF 1284 (1300)
Q Consensus 1278 ~~~~~~f 1284 (1300)
+++...+
T Consensus 242 ~~~~~~~ 248 (258)
T PRK14268 242 HNPREKS 248 (258)
T ss_pred cCCCCHH
Confidence 7654443
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=365.08 Aligned_cols=220 Identities=25% Similarity=0.430 Sum_probs=188.2
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcC---CCC--CcceEEECCeecCCC--CHH
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRI---VEP--TAGEIVIDGINISSI--GLH 1126 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl---~~p--~~G~I~idg~di~~i--~~~ 1126 (1300)
.++++|++++|++ ..+|+|+||+|++||++||+|+||||||||+++|+|+ ++| ++|+|.+||.++... +..
T Consensus 3 ~l~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14245 3 KIDARDVNFWYGD--FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVD 80 (250)
T ss_pred EEEEEEEEEEECC--EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHH
Confidence 5899999999975 3599999999999999999999999999999999997 454 589999999998753 345
Q ss_pred HHhcccEEEcCCCCCCcccHHHhcCCC---CCC-----CHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHH
Q 000755 1127 DLRSRLSIIPQDPTMFEGTVRNNLDPL---EEY-----KDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQ 1198 (1300)
Q Consensus 1127 ~lr~~i~~vpQ~~~lf~gTvr~Nl~~~---~~~-----~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQ 1198 (1300)
.+|++++|+||++.+|..|+++|+... ... .+++++++++.+++.+.+.. .....+.+|||||||
T Consensus 81 ~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~q 153 (250)
T PRK14245 81 ELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKD-------KLKESAFALSGGQQQ 153 (250)
T ss_pred HHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhh-------hhhCCcccCCHHHHH
Confidence 678899999999999988999998632 111 23456778888887654321 233456789999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHH
Q 000755 1199 LVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLL 1277 (1300)
Q Consensus 1199 rl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~ 1277 (1300)
|++|||||+++|++|||||||++||+.+.+.+.+.|++..+++|||++||+++.+.. ||||++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 154 RLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999987667999999999999976 9999999999999999999998
Q ss_pred hcCCC
Q 000755 1278 ENKSS 1282 (1300)
Q Consensus 1278 ~~~~~ 1282 (1300)
+++..
T Consensus 234 ~~~~~ 238 (250)
T PRK14245 234 TNPEK 238 (250)
T ss_pred cCCCC
Confidence 76543
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=367.09 Aligned_cols=220 Identities=26% Similarity=0.479 Sum_probs=187.5
Q ss_pred ceEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCC-----CCcceEEECCeecCC--CCH
Q 000755 1053 GEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVE-----PTAGEIVIDGINISS--IGL 1125 (1300)
Q Consensus 1053 g~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~-----p~~G~I~idg~di~~--i~~ 1125 (1300)
..++++|++++|++ ..+|+|+||+|++||++||+|+||||||||+++|+|+.+ |++|+|.++|.++.. .+.
T Consensus 20 ~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 20 HILEVKDLSIYYGE--KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred ceEEEEEEEEEeCC--ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 36999999999974 359999999999999999999999999999999999875 799999999999864 334
Q ss_pred HHHhcccEEEcCCCCCCcccHHHhcCCC----CCC----CHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHH
Q 000755 1126 HDLRSRLSIIPQDPTMFEGTVRNNLDPL----EEY----KDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQR 1197 (1300)
Q Consensus 1126 ~~lr~~i~~vpQ~~~lf~gTvr~Nl~~~----~~~----~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqr 1197 (1300)
..+|++++|+||++.+|.+|+++|+... ... .++.+.++++.+++.+.+. ......+.+||||||
T Consensus 98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq~ 170 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVK-------DRLHSSALSLSGGQQ 170 (268)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchH-------HHHhcCcccCCHHHH
Confidence 4678899999999999989999998632 111 1234667777777753221 122345678999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhH
Q 000755 1198 QLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKL 1276 (1300)
Q Consensus 1198 Qrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l 1276 (1300)
||++|||||+++|++|||||||++||+.+.+.+.+.|++..+++|||++||+++.+.. ||||++|++|++++.|+++++
T Consensus 171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 250 (268)
T PRK14248 171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQI 250 (268)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999987667899999999999876 999999999999999999999
Q ss_pred HhcCC
Q 000755 1277 LENKS 1281 (1300)
Q Consensus 1277 ~~~~~ 1281 (1300)
.+++.
T Consensus 251 ~~~~~ 255 (268)
T PRK14248 251 FTSPK 255 (268)
T ss_pred HhCCC
Confidence 87644
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=330.39 Aligned_cols=210 Identities=27% Similarity=0.415 Sum_probs=186.4
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEE
Q 000755 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSI 1134 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~ 1134 (1300)
|.+++|.+.|... | =..+++|++||++||+||||||||||+++++|+..|.+|+|.|+|+|...-++.+ +-+++
T Consensus 2 l~L~~V~~~y~~~-~---~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~--RPVSm 75 (231)
T COG3840 2 LALDDVRFSYGHL-P---MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAE--RPVSM 75 (231)
T ss_pred ccccceEEeeCcc-e---EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCccc--CChhh
Confidence 5678999999753 3 3578999999999999999999999999999999999999999999998766554 56999
Q ss_pred EcCCCCCCcc-cHHHhcCCC----CC---CCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHH
Q 000755 1135 IPQDPTMFEG-TVRNNLDPL----EE---YKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVL 1206 (1300)
Q Consensus 1135 vpQ~~~lf~g-Tvr~Nl~~~----~~---~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARal 1206 (1300)
++||..||.- ||++|+... -. ...+.+..++.++|+.++.+++|+ .||||||||++|||+|
T Consensus 76 lFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARcl 144 (231)
T COG3840 76 LFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARCL 144 (231)
T ss_pred hhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHHH
Confidence 9999999976 999998643 12 234568899999999999999986 4699999999999999
Q ss_pred ccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc--CCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHHhcCC
Q 000755 1207 LKKSKVLVLDEATASVDTATDNLIQQTLRQHF--SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENKS 1281 (1300)
Q Consensus 1207 l~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~~~~~ 1281 (1300)
+++-+||+||||+|+||+.-++++...+.+.. ++.|+++|||.++.+.. +||++++++|||.+.|+.++++....
T Consensus 145 vR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~~ 222 (231)
T COG3840 145 VREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKA 222 (231)
T ss_pred hccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccCC
Confidence 99999999999999999999999999998865 46899999999999988 99999999999999999999987544
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=365.05 Aligned_cols=221 Identities=26% Similarity=0.437 Sum_probs=188.3
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCC--C---CcceEEECCeecCC--CCHH
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVE--P---TAGEIVIDGINISS--IGLH 1126 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~--p---~~G~I~idg~di~~--i~~~ 1126 (1300)
.|+++|++++|+.. ++|+|+||+|++||++||+|+||||||||+++|+|+++ | ++|+|.+||.++.. .+..
T Consensus 12 ~l~i~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 89 (259)
T PRK14274 12 VYQINGMNLWYGQH--HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLV 89 (259)
T ss_pred eEEEeeEEEEECCe--eeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHH
Confidence 69999999999753 59999999999999999999999999999999999997 3 59999999999863 3455
Q ss_pred HHhcccEEEcCCCCCCcccHHHhcCCCC---C-CCH----HHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHH
Q 000755 1127 DLRSRLSIIPQDPTMFEGTVRNNLDPLE---E-YKD----EEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQ 1198 (1300)
Q Consensus 1127 ~lr~~i~~vpQ~~~lf~gTvr~Nl~~~~---~-~~d----~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQ 1198 (1300)
.+|++++|+||++.+|..|+++|+.+.. . ..+ +++.++++.+++.+.+.. .....+.+|||||||
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~l~~~~~~LS~Gq~q 162 (259)
T PRK14274 90 ELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKD-------RLHTQALSLSGGQQQ 162 (259)
T ss_pred HHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHHH
Confidence 6788999999999999889999986421 1 122 235566777777544321 223456789999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHH
Q 000755 1199 LVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLL 1277 (1300)
Q Consensus 1199 rl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~ 1277 (1300)
|++||||++++|++|+|||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||||++|++|++++.|++++++
T Consensus 163 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 163 RLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMF 242 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999987667899999999999887 9999999999999999999998
Q ss_pred hcCCCh
Q 000755 1278 ENKSSS 1283 (1300)
Q Consensus 1278 ~~~~~~ 1283 (1300)
+++...
T Consensus 243 ~~~~~~ 248 (259)
T PRK14274 243 SNPDDQ 248 (259)
T ss_pred hCCCCH
Confidence 765443
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-40 Score=373.71 Aligned_cols=213 Identities=28% Similarity=0.479 Sum_probs=188.6
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccE
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLS 1133 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~ 1133 (1300)
.++++|++++|+.+ ..+|+||||+|++||++|++||||||||||+++|+|+++|++|+|.++|.|...- ..+.|+++|
T Consensus 4 ~i~~~~l~k~~~~~-~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~ig 81 (293)
T COG1131 4 VIEVRNLTKKYGGD-KTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRIG 81 (293)
T ss_pred eeeecceEEEeCCC-CEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhheE
Confidence 47889999999841 3599999999999999999999999999999999999999999999999998654 677899999
Q ss_pred EEcCCCCCCcc-cHHHhcCCCC---C----CCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHH
Q 000755 1134 IIPQDPTMFEG-TVRNNLDPLE---E----YKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRV 1205 (1300)
Q Consensus 1134 ~vpQ~~~lf~g-Tvr~Nl~~~~---~----~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARa 1205 (1300)
|+||+|.+++. |++|||.++. . ..++.+.++++.++|.+.-. .....||+|||||+.||+|
T Consensus 82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~lS~G~kqrl~ia~a 150 (293)
T COG1131 82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKAN-----------KKVRTLSGGMKQRLSIALA 150 (293)
T ss_pred EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhC-----------cchhhcCHHHHHHHHHHHH
Confidence 99999998876 9999997542 1 22467889999999976321 1235689999999999999
Q ss_pred HccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC-C-cEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHHhc
Q 000755 1206 LLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS-D-CTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLEN 1279 (1300)
Q Consensus 1206 ll~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~-~-~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~~~ 1279 (1300)
|+.+|++|||||||+|||+.+...+.+.|++..+ + +||+++||.++++.. ||||++|++|+++.+|+++++...
T Consensus 151 L~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999999999775 4 699999999999998 999999999999999999998653
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=355.45 Aligned_cols=198 Identities=25% Similarity=0.373 Sum_probs=172.5
Q ss_pred EEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEEE
Q 000755 1056 DILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSII 1135 (1300)
Q Consensus 1056 ~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~v 1135 (1300)
+++|++++|++. .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.. ...|++++|+
T Consensus 1 ~~~~l~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~ 76 (205)
T cd03226 1 RIENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYV 76 (205)
T ss_pred CcccEEEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEE
Confidence 367999999752 359999999999999999999999999999999999999999999999998854 4567789999
Q ss_pred cCCC--CCCcccHHHhcCCCC---CCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCC
Q 000755 1136 PQDP--TMFEGTVRNNLDPLE---EYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKS 1210 (1300)
Q Consensus 1136 pQ~~--~lf~gTvr~Nl~~~~---~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~ 1210 (1300)
||++ .+|+.|+++|+.... ...++++.++++.+++.+...+.+ ..||||||||++|||||+.+|
T Consensus 77 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~~~p 145 (205)
T cd03226 77 MQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHP-----------LSLSGGQKQRLAIAAALLSGK 145 (205)
T ss_pred ecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCc-----------hhCCHHHHHHHHHHHHHHhCC
Confidence 9998 367789999996432 122356888999999876544433 468999999999999999999
Q ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhc-cCEEEEEeCCEEE
Q 000755 1211 KVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGIIE 1268 (1300)
Q Consensus 1211 ~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~ 1268 (1300)
++|+|||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|+++
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 146 DLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999999863 57899999999999987 9999999999975
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=360.93 Aligned_cols=211 Identities=24% Similarity=0.361 Sum_probs=181.7
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEE
Q 000755 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSI 1134 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~ 1134 (1300)
++++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+.. .+++++|
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~-~~~~i~~ 78 (236)
T TIGR03864 2 LEVAGLSFAYGA--RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRA-ALARLGV 78 (236)
T ss_pred EEEEeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChh-hhhhEEE
Confidence 689999999974 3599999999999999999999999999999999999999999999999998776544 3458999
Q ss_pred EcCCCCCC-cccHHHhcCCCC---CCC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHH
Q 000755 1135 IPQDPTMF-EGTVRNNLDPLE---EYK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVL 1206 (1300)
Q Consensus 1135 vpQ~~~lf-~gTvr~Nl~~~~---~~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARal 1206 (1300)
+||++.++ ..|+++|+.... ... ++++.+.++.+++.+. ......+||||||||++|||||
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qrl~laral 147 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAER-----------ADDKVRELNGGHRRRVEIARAL 147 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhh-----------hcCChhhCCHHHHHHHHHHHHH
Confidence 99999874 569999986421 122 2345566776666433 3344568999999999999999
Q ss_pred ccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc--CCcEEEEEeCChhhhhccCEEEEEeCCEEEEecChhhHHhc
Q 000755 1207 LKKSKVLVLDEATASVDTATDNLIQQTLRQHF--SDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLEN 1279 (1300)
Q Consensus 1207 l~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~iaHrl~~i~~~D~v~vl~~G~i~e~g~~~~l~~~ 1279 (1300)
+++|++|||||||++||+.+.+.+.+.|++.. .++|+|++||+++.+..||+|++|++|++++.|+++++.++
T Consensus 148 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 148 LHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 99999999999999999999999999999865 37899999999999988999999999999999999999864
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=360.98 Aligned_cols=208 Identities=25% Similarity=0.332 Sum_probs=179.6
Q ss_pred eEEEEeeeeeeCCCC--CcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHH---H
Q 000755 1054 EVDILNLQVRYAPHL--PLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHD---L 1128 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~--~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~---l 1128 (1300)
.++++||+++|+++. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++..++... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 589999999997532 46999999999999999999999999999999999999999999999999998877654 3
Q ss_pred h-cccEEEcCCCCCCcc-cHHHhcCCC---CCCC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHH
Q 000755 1129 R-SRLSIIPQDPTMFEG-TVRNNLDPL---EEYK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQL 1199 (1300)
Q Consensus 1129 r-~~i~~vpQ~~~lf~g-Tvr~Nl~~~---~~~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQr 1199 (1300)
| ++++|+||++.+|+. |+++|+.+. .... ++++.++++.+++.+...+ ...+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANH-----------RPSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhC-----------ChhhCCHHHHHH
Confidence 3 679999999998876 999998641 1212 2356778888877654333 346799999999
Q ss_pred HHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc--CCcEEEEEeCChhhhhccCEEEEEeCCEEEEecC
Q 000755 1200 VCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF--SDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDS 1272 (1300)
Q Consensus 1200 l~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~iaHrl~~i~~~D~v~vl~~G~i~e~g~ 1272 (1300)
++||||++.+|++|||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+..+|++++|++|++++.++
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999999864 4789999999999999889999999999998765
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-39 Score=365.91 Aligned_cols=220 Identities=25% Similarity=0.444 Sum_probs=190.3
Q ss_pred ceEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCC-----CCcceEEECCeecCC--CCH
Q 000755 1053 GEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVE-----PTAGEIVIDGINISS--IGL 1125 (1300)
Q Consensus 1053 g~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~-----p~~G~I~idg~di~~--i~~ 1125 (1300)
..|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++.. .+.
T Consensus 19 ~~l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 96 (267)
T PRK14237 19 IALSTKDLHVYYGK--KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINV 96 (267)
T ss_pred eEEEEeeEEEEECC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCCh
Confidence 46999999999964 469999999999999999999999999999999999997 589999999999864 345
Q ss_pred HHHhcccEEEcCCCCCCcccHHHhcCCC----CCCC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHH
Q 000755 1126 HDLRSRLSIIPQDPTMFEGTVRNNLDPL----EEYK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQR 1197 (1300)
Q Consensus 1126 ~~lr~~i~~vpQ~~~lf~gTvr~Nl~~~----~~~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqr 1197 (1300)
..+|+.++|+||++.+|..|+++|+... .... ++++.++++.+++.+.+. ......+..||+|||
T Consensus 97 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~G~~ 169 (267)
T PRK14237 97 YEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVK-------DDLHKSALTLSGGQQ 169 (267)
T ss_pred HHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhh-------hhhcCCcccCCHHHH
Confidence 5678899999999999989999999642 1111 344667788888865442 223456678999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhH
Q 000755 1198 QLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKL 1276 (1300)
Q Consensus 1198 Qrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l 1276 (1300)
||++||||++++|++|||||||++||+.+...+.+.|++..++.|||++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 170 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14237 170 QRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNI 249 (267)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988667899999999999877 999999999999999999999
Q ss_pred HhcCC
Q 000755 1277 LENKS 1281 (1300)
Q Consensus 1277 ~~~~~ 1281 (1300)
.+.+.
T Consensus 250 ~~~~~ 254 (267)
T PRK14237 250 FTNPK 254 (267)
T ss_pred hcCCC
Confidence 86543
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=364.74 Aligned_cols=223 Identities=26% Similarity=0.414 Sum_probs=188.4
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCC-----CCcceEEECCeecCC--CCHH
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVE-----PTAGEIVIDGINISS--IGLH 1126 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~-----p~~G~I~idg~di~~--i~~~ 1126 (1300)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++.. .+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~ 81 (251)
T PRK14251 4 IISAKDVHLSYGN--YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLV 81 (251)
T ss_pred eEEEEeeEEEECC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHH
Confidence 5899999999975 359999999999999999999999999999999999997 489999999999854 3345
Q ss_pred HHhcccEEEcCCCCCCcccHHHhcCCCC---CC-----CHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHH
Q 000755 1127 DLRSRLSIIPQDPTMFEGTVRNNLDPLE---EY-----KDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQ 1198 (1300)
Q Consensus 1127 ~lr~~i~~vpQ~~~lf~gTvr~Nl~~~~---~~-----~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQ 1198 (1300)
.+|+.++|+||++.+|+.|+++|+.+.. .. .++++.++++.+++++... .. ....+.+|||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~----~~~~~~~LS~Gq~q 154 (251)
T PRK14251 82 ELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETK---DN----LDRNAQAFSGGQQQ 154 (251)
T ss_pred HhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchH---HH----hccChhhCCHHHHH
Confidence 6788899999999999999999996421 11 1234566777777743211 11 23455789999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHH
Q 000755 1199 LVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLL 1277 (1300)
Q Consensus 1199 rl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~ 1277 (1300)
|++||||++++|+++||||||++||+.+.+.+.+.|++..++.|||+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 155 r~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 155 RICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667899999999999887 9999999999999999999998
Q ss_pred hcCCChHH
Q 000755 1278 ENKSSSFA 1285 (1300)
Q Consensus 1278 ~~~~~~f~ 1285 (1300)
..+.-.|.
T Consensus 235 ~~~~~~~~ 242 (251)
T PRK14251 235 IAPKKQIT 242 (251)
T ss_pred hCCCCHHH
Confidence 65544443
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=369.99 Aligned_cols=218 Identities=24% Similarity=0.385 Sum_probs=186.7
Q ss_pred EEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHH----hcc
Q 000755 1056 DILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDL----RSR 1131 (1300)
Q Consensus 1056 ~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~l----r~~ 1131 (1300)
.++|+++.|++. ++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+ +++
T Consensus 26 ~~~~~~~~~~~~--~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~ 103 (269)
T cd03294 26 SKEEILKKTGQT--VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK 103 (269)
T ss_pred hhhhhhhhcCCc--eEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCc
Confidence 566888888753 58999999999999999999999999999999999999999999999999987765443 457
Q ss_pred cEEEcCCCCCCc-ccHHHhcCCC---CCC----CHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHH
Q 000755 1132 LSIIPQDPTMFE-GTVRNNLDPL---EEY----KDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLG 1203 (1300)
Q Consensus 1132 i~~vpQ~~~lf~-gTvr~Nl~~~---~~~----~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LA 1203 (1300)
++|+||++.+|. .|+++|+... ... .++++.++++.+++.+...+.+ .+||||||||++||
T Consensus 104 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrv~lA 172 (269)
T cd03294 104 ISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP-----------DELSGGMQQRVGLA 172 (269)
T ss_pred EEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence 999999999885 5999998642 111 1345677888888876655443 46899999999999
Q ss_pred HHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc--CCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHHhcC
Q 000755 1204 RVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF--SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENK 1280 (1300)
Q Consensus 1204 Rall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~~~~ 1280 (1300)
|||+++|+||||||||++||+.+.+.+.+.|++.. .++|||++||+++.+.. ||+|++|++|++++.|+++++++++
T Consensus 173 ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 252 (269)
T cd03294 173 RALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNP 252 (269)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhCc
Confidence 99999999999999999999999999999998864 26899999999999876 9999999999999999999998765
Q ss_pred CChHHH
Q 000755 1281 SSSFAQ 1286 (1300)
Q Consensus 1281 ~~~f~~ 1286 (1300)
...+.+
T Consensus 253 ~~~~~~ 258 (269)
T cd03294 253 ANDYVR 258 (269)
T ss_pred CcHHHH
Confidence 554443
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=359.35 Aligned_cols=219 Identities=30% Similarity=0.447 Sum_probs=194.4
Q ss_pred EEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe-------------EE
Q 000755 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------KA 683 (1300)
Q Consensus 617 I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-------------~a 683 (1300)
|+++|++++|+. ..+++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|. ++
T Consensus 1 i~~~~l~~~~~~-~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKP-DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCC-CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 468999999963 2357999999999999999999999999999999999999999999999872 79
Q ss_pred EEecCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCE
Q 000755 684 YVAQSPWIQSGNIEDNILFGKP-MDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADI 762 (1300)
Q Consensus 684 yv~Q~~~l~~~Ti~eNI~fg~~-~~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLARAly~~~~i 762 (1300)
|++|++++++.|++||+.++.+ ...++..+.++..++.+.++.+|.|.++..+.++.+||||||||++||||++.+|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 9999999999999999998754 345566666777788888889999999989999999999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHhcCchHHHH
Q 000755 763 YLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSGTDFMVL 837 (1300)
Q Consensus 763 llLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~l 837 (1300)
+||||||++||+.+...+.+ .+..+.+++|+|++||+++.+..||+|++|++|++++.|+++++......|..+
T Consensus 160 lllDEP~~~LD~~~~~~l~~-~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~ 233 (237)
T cd03252 160 LIFDEATSALDYESEHAIMR-NMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYL 233 (237)
T ss_pred EEEeCCcccCCHHHHHHHHH-HHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhccChHHHH
Confidence 99999999999999888865 455555689999999999999889999999999999999999988776555543
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=362.35 Aligned_cols=222 Identities=27% Similarity=0.463 Sum_probs=189.1
Q ss_pred ceEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CcceEEECCeecCC--CCH
Q 000755 1053 GEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGEIVIDGINISS--IGL 1125 (1300)
Q Consensus 1053 g~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p-----~~G~I~idg~di~~--i~~ 1125 (1300)
|.|+++||+++|++. ++++|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++.. .+.
T Consensus 2 ~~l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14240 2 GKISVKDLDLFYGDF--QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79 (250)
T ss_pred CeEEEEEEEEEECCc--eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 569999999999753 599999999999999999999999999999999999863 69999999999864 345
Q ss_pred HHHhcccEEEcCCCCCCcccHHHhcCCCC---CC-----CHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHH
Q 000755 1126 HDLRSRLSIIPQDPTMFEGTVRNNLDPLE---EY-----KDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQR 1197 (1300)
Q Consensus 1126 ~~lr~~i~~vpQ~~~lf~gTvr~Nl~~~~---~~-----~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqr 1197 (1300)
..+|++++|+||++.+|+.|+++|+.... .. .++++.++++.+++.+.+.. .....+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~G~~ 152 (250)
T PRK14240 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKD-------RLKKSALGLSGGQQ 152 (250)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHH-------HHhcCCCCCCHHHH
Confidence 56788999999999999899999996421 11 13445667777776543321 23345678999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhH
Q 000755 1198 QLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKL 1276 (1300)
Q Consensus 1198 Qrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l 1276 (1300)
||++|||||+.+|++|||||||++||+.+...+.+.|++..+++|||++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (250)
T PRK14240 153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDL 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999987667899999999999887 999999999999999999999
Q ss_pred HhcCCCh
Q 000755 1277 LENKSSS 1283 (1300)
Q Consensus 1277 ~~~~~~~ 1283 (1300)
..++...
T Consensus 233 ~~~~~~~ 239 (250)
T PRK14240 233 FTNPKDK 239 (250)
T ss_pred HhCCCCh
Confidence 8654443
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=366.26 Aligned_cols=221 Identities=26% Similarity=0.438 Sum_probs=188.7
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCC-----CCcceEEECCeecCCCC--HHH
Q 000755 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVE-----PTAGEIVIDGINISSIG--LHD 1127 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~-----p~~G~I~idg~di~~i~--~~~ 1127 (1300)
-+++|++++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++...+ ...
T Consensus 6 ~~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 83 (251)
T PRK14244 6 ASVKNLNLWYGS--KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVL 83 (251)
T ss_pred EEeeeEEEEECC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHH
Confidence 478899999964 369999999999999999999999999999999999986 47999999999986543 335
Q ss_pred HhcccEEEcCCCCCCcccHHHhcCCC---CC------CCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHH
Q 000755 1128 LRSRLSIIPQDPTMFEGTVRNNLDPL---EE------YKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQ 1198 (1300)
Q Consensus 1128 lr~~i~~vpQ~~~lf~gTvr~Nl~~~---~~------~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQ 1198 (1300)
+|++++|+||++.+|.+|+++|+... .. ..++++.++++.+++.+.+. +.+...+.+|||||||
T Consensus 84 ~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~q 156 (251)
T PRK14244 84 LRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELG-------DRLKDSAFELSGGQQQ 156 (251)
T ss_pred HhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhh-------hHhhcChhhCCHHHHH
Confidence 78899999999999989999998632 11 11345677888888765322 1233456789999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHH
Q 000755 1199 LVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLL 1277 (1300)
Q Consensus 1199 rl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~ 1277 (1300)
|++||||++++|++|||||||++||+.+.+.+.+.|++..+++|||+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 157 RLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIF 236 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999987668999999999999987 9999999999999999999998
Q ss_pred hcCCChH
Q 000755 1278 ENKSSSF 1284 (1300)
Q Consensus 1278 ~~~~~~f 1284 (1300)
+++...+
T Consensus 237 ~~~~~~~ 243 (251)
T PRK14244 237 KNPQSSK 243 (251)
T ss_pred cCCCChH
Confidence 7665544
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=370.77 Aligned_cols=213 Identities=29% Similarity=0.426 Sum_probs=185.2
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecC--CCCHHHHhcc
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINIS--SIGLHDLRSR 1131 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~--~i~~~~lr~~ 1131 (1300)
.|+++|++++|+++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++. ..+..++|++
T Consensus 5 ~l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 5 ILKVEELNYNYSDG-THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred eEEEEeEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 58999999999633 35999999999999999999999999999999999999999999999999984 3345678889
Q ss_pred cEEEcCCC--CCCcccHHHhcCCC---CCCCH----HHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHH
Q 000755 1132 LSIIPQDP--TMFEGTVRNNLDPL---EEYKD----EEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCL 1202 (1300)
Q Consensus 1132 i~~vpQ~~--~lf~gTvr~Nl~~~---~~~~d----~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~L 1202 (1300)
++|+||+| .+|+.|+++|+... ...+. +.+.++++.+++.+.. ...+.+||||||||++|
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~LS~G~~qrl~l 152 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLK-----------DKPTHCLSFGQKKRVAI 152 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhh-----------hCCcccCCHHHHHHHHH
Confidence 99999998 56788999999642 12222 3456678888876543 23456899999999999
Q ss_pred HHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHHh
Q 000755 1203 GRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLE 1278 (1300)
Q Consensus 1203 ARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~~ 1278 (1300)
||||+.+|++|||||||++||+.+.+.+.+.|++..+ ++|||++||+++.+.. ||||++|++|++++.|+++++++
T Consensus 153 araL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 153 AGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999988753 7899999999999986 99999999999999999999875
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=359.22 Aligned_cols=202 Identities=28% Similarity=0.416 Sum_probs=173.5
Q ss_pred EEEEeeeeeeCCCC--CcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHH----H
Q 000755 1055 VDILNLQVRYAPHL--PLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHD----L 1128 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~--~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~----l 1128 (1300)
|+++|++++|++.. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 47899999997521 36999999999999999999999999999999999999999999999999998766432 3
Q ss_pred hcccEEEcCCCCCCcc-cHHHhcCCCC---CC----CHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHH
Q 000755 1129 RSRLSIIPQDPTMFEG-TVRNNLDPLE---EY----KDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLV 1200 (1300)
Q Consensus 1129 r~~i~~vpQ~~~lf~g-Tvr~Nl~~~~---~~----~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl 1200 (1300)
+++++|+||++.+|.+ |+++|+.... .. .++++.++++.+++.+...+ ...+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNH-----------YPSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhc-----------ChhhcCHHHHHHH
Confidence 5689999999999876 9999986421 11 13456778888877654433 3357899999999
Q ss_pred HHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhccCEEEEEeCCEE
Q 000755 1201 CLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVIDSDMVLLLSHGII 1267 (1300)
Q Consensus 1201 ~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~~D~v~vl~~G~i 1267 (1300)
+|||||+.+|++|||||||++||+.+.+.+.+.|++..+ ++|||++||+++.+..||+|++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999999999998754 7899999999999877999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=364.19 Aligned_cols=220 Identities=29% Similarity=0.432 Sum_probs=187.2
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCC--CC---CcceEEECCeecCCC--CHH
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIV--EP---TAGEIVIDGINISSI--GLH 1126 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~--~p---~~G~I~idg~di~~i--~~~ 1126 (1300)
.++++|++++|+.. ++|+|+||+|++||++||+||||||||||+++|+|+. +| ++|+|.+||.++... ...
T Consensus 5 ~l~~~~l~~~~~~~--~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14239 5 ILQVSDLSVYYNKK--KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV 82 (252)
T ss_pred eEEEEeeEEEECCe--eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchH
Confidence 58999999999753 5999999999999999999999999999999999995 46 599999999998643 345
Q ss_pred HHhcccEEEcCCCCCCcccHHHhcCCC----CCC----CHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHH
Q 000755 1127 DLRSRLSIIPQDPTMFEGTVRNNLDPL----EEY----KDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQ 1198 (1300)
Q Consensus 1127 ~lr~~i~~vpQ~~~lf~gTvr~Nl~~~----~~~----~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQ 1198 (1300)
.+|+.++|+||++.+|+.|+++|+... ... .++++.++++.+++.+.+.. .......+||+||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~q 155 (252)
T PRK14239 83 DLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKD-------RLHDSALGLSGGQQQ 155 (252)
T ss_pred hhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHH-------HHhcCcccCCHHHHH
Confidence 678889999999999999999998632 111 12345667888877543321 234456789999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHH
Q 000755 1199 LVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLL 1277 (1300)
Q Consensus 1199 rl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~ 1277 (1300)
|++|||||+++|++|||||||++||+.+...+.+.|++..+++|||++||+++.+.. ||||++|++|++++.|++++++
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 156 RVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667899999999999876 9999999999999999999998
Q ss_pred hcCCC
Q 000755 1278 ENKSS 1282 (1300)
Q Consensus 1278 ~~~~~ 1282 (1300)
+++..
T Consensus 236 ~~~~~ 240 (252)
T PRK14239 236 MNPKH 240 (252)
T ss_pred hCCCC
Confidence 76543
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=352.74 Aligned_cols=201 Identities=60% Similarity=1.011 Sum_probs=184.1
Q ss_pred EEEEeEEEEecCCCC--CCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCeEEEEecCCcCCCC
Q 000755 617 IEIVDGNFAWDISSN--NPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSG 694 (1300)
Q Consensus 617 I~i~~~~fs~~~~~~--~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~~ayv~Q~~~l~~~ 694 (1300)
++++|++++|+.... .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++|++|+|.+++.
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~~ 80 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQNG 80 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhccC
Confidence 468999999964211 369999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHhcCCCCCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecCCCCCCH
Q 000755 695 NIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDA 774 (1300)
Q Consensus 695 Ti~eNI~fg~~~~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLARAly~~~~illLDep~saLD~ 774 (1300)
|++||+.++..+++++..++++.+++.+.+..+|.|++|.+++++.+||||||||++||||++++|++++|||||++||+
T Consensus 81 t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~ 160 (204)
T cd03250 81 TIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDA 160 (204)
T ss_pred cHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCH
Confidence 99999999877777778888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhc-CCcEEEEEecCCCccccCCEEEEEeCCe
Q 000755 775 HTGSHLFKEVLLGLL-RSKTVIYVTHQVEFLPAADLILVMKDGK 817 (1300)
Q Consensus 775 ~t~~~i~~~~~~~~l-~~~TvIlvtH~~~~l~~~d~i~~l~~G~ 817 (1300)
+..+.+++.++.... +++|+|++||+++.+..||++++|++|+
T Consensus 161 ~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 161 HVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 998888876655443 4689999999999988899999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=372.88 Aligned_cols=215 Identities=21% Similarity=0.309 Sum_probs=183.6
Q ss_pred eEEEEeeeeeeCCCC---CcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCC--------
Q 000755 1054 EVDILNLQVRYAPHL---PLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISS-------- 1122 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~---~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~-------- 1122 (1300)
.|+++|++++|+... .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 388999999997542 259999999999999999999999999999999999999999999999887632
Q ss_pred ----------------CCHHHHhcccEEEcCCC--CCCcccHHHhcCCCC---CCC----HHHHHHHHHHcCCc-HHHHh
Q 000755 1123 ----------------IGLHDLRSRLSIIPQDP--TMFEGTVRNNLDPLE---EYK----DEEIWEALDKCQLG-DEVRN 1176 (1300)
Q Consensus 1123 ----------------i~~~~lr~~i~~vpQ~~--~lf~gTvr~Nl~~~~---~~~----d~~i~~~l~~~~l~-~~i~~ 1176 (1300)
.+...+|++++|+||+| .+|..||++|+.+.. ..+ ++++.++++.+++. +...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~- 160 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQ- 160 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhh-
Confidence 13456788999999986 578889999996431 222 23467788888875 3332
Q ss_pred hcCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhc
Q 000755 1177 KEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVID 1255 (1300)
Q Consensus 1177 ~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~ 1255 (1300)
....+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+..
T Consensus 161 ----------~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~ 230 (305)
T PRK13651 161 ----------RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLE 230 (305)
T ss_pred ----------CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHH
Confidence 3346789999999999999999999999999999999999999999998864 47899999999998876
Q ss_pred -cCEEEEEeCCEEEEecChhhHHhc
Q 000755 1256 -SDMVLLLSHGIIEEYDSPTKLLEN 1279 (1300)
Q Consensus 1256 -~D~v~vl~~G~i~e~g~~~~l~~~ 1279 (1300)
||||++|++|++++.|+++++.++
T Consensus 231 ~adrv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 231 WTKRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred hCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999998754
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=367.50 Aligned_cols=223 Identities=22% Similarity=0.341 Sum_probs=189.3
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHH---HHhc
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLH---DLRS 1130 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~---~lr~ 1130 (1300)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+.. .+|+
T Consensus 7 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 7 LVDMRGVSFTRGN--RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred eEEEeCeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 5899999999964 3599999999999999999999999999999999999999999999999998776543 3577
Q ss_pred ccEEEcCCCCCCcc-cHHHhcCCC----CCCCH----HHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHH
Q 000755 1131 RLSIIPQDPTMFEG-TVRNNLDPL----EEYKD----EEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVC 1201 (1300)
Q Consensus 1131 ~i~~vpQ~~~lf~g-Tvr~Nl~~~----~~~~d----~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~ 1201 (1300)
+++|+||++.+|.+ |+++|+.+. ...+. +.+.++++.+++.+.... ...+||||||||++
T Consensus 85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qrv~ 153 (269)
T PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKL-----------MPSELSGGMARRAA 153 (269)
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhC-----------ChhhCCHHHHHHHH
Confidence 89999999999986 999998531 11222 345567788877554332 33578999999999
Q ss_pred HHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHHh
Q 000755 1202 LGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLE 1278 (1300)
Q Consensus 1202 LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~~ 1278 (1300)
|||||+++|++|||||||++||+.+.+.+.+.|++..+ ++|||++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 154 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 233 (269)
T PRK11831 154 LARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQA 233 (269)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998643 6899999999999987 99999999999999999999987
Q ss_pred cCCChHHHHHH
Q 000755 1279 NKSSSFAQLVA 1289 (1300)
Q Consensus 1279 ~~~~~f~~l~~ 1289 (1300)
++......++.
T Consensus 234 ~~~~~~~~~~~ 244 (269)
T PRK11831 234 NPDPRVRQFLD 244 (269)
T ss_pred CCcHHHHHHHH
Confidence 55444455554
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=358.02 Aligned_cols=205 Identities=25% Similarity=0.397 Sum_probs=177.8
Q ss_pred EEEEeeeeeeCCCC--CcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhccc
Q 000755 1055 VDILNLQVRYAPHL--PLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRL 1132 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~--~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i 1132 (1300)
|+++|++++|+... +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.. ...++|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 68999999997532 269999999999999999999999999999999999999999999999999875 345678899
Q ss_pred EEEcCCCCCCcc-cHHHhcCCCC---CCC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHH
Q 000755 1133 SIIPQDPTMFEG-TVRNNLDPLE---EYK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGR 1204 (1300)
Q Consensus 1133 ~~vpQ~~~lf~g-Tvr~Nl~~~~---~~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LAR 1204 (1300)
+|+||++.+|.+ |+++|+.... ... ++++.++++.+++.+...+ ...+||||||||++|||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~lar 149 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDR-----------RVGGFSTGMRQKVAIAR 149 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhh-----------hhhhcCHHHHHHHHHHH
Confidence 999999999886 9999985321 111 3456778888887655443 34578999999999999
Q ss_pred HHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEec
Q 000755 1205 VLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYD 1271 (1300)
Q Consensus 1205 all~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g 1271 (1300)
|++.+|++|||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|
T Consensus 150 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999864 47899999999999887 9999999999998764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=372.01 Aligned_cols=216 Identities=25% Similarity=0.405 Sum_probs=184.2
Q ss_pred eEEEEeeeeeeCCCC---CcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCC----CCHH
Q 000755 1054 EVDILNLQVRYAPHL---PLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISS----IGLH 1126 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~---~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~----i~~~ 1126 (1300)
.++++|++++|++.. .++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||+++.. .+..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999996431 359999999999999999999999999999999999999999999999999863 3456
Q ss_pred HHhcccEEEcCCC--CCCcccHHHhcCCCC---CCCH----HHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHH
Q 000755 1127 DLRSRLSIIPQDP--TMFEGTVRNNLDPLE---EYKD----EEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQR 1197 (1300)
Q Consensus 1127 ~lr~~i~~vpQ~~--~lf~gTvr~Nl~~~~---~~~d----~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqr 1197 (1300)
..|++++|+||+| .+|+.|+++|+.+.. ..+. +.+.++++.+++.+.+. ......||||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~----------~~~~~~LSgGq~ 151 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELL----------ARSPFELSGGQM 151 (290)
T ss_pred HHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhh----------hCCcccCCHHHH
Confidence 6788999999998 578889999986321 1232 24566788888753221 234467999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChh
Q 000755 1198 QLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPT 1274 (1300)
Q Consensus 1198 Qrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~ 1274 (1300)
||++|||||+.+|++|||||||++||+.+...+.+.|++..+ +.|||+|||+++.+.. ||||++|++|++++.|+++
T Consensus 152 qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~ 231 (290)
T PRK13634 152 RRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPR 231 (290)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999988643 7899999999999876 9999999999999999999
Q ss_pred hHHhc
Q 000755 1275 KLLEN 1279 (1300)
Q Consensus 1275 ~l~~~ 1279 (1300)
++.++
T Consensus 232 ~~~~~ 236 (290)
T PRK13634 232 EIFAD 236 (290)
T ss_pred HHhcC
Confidence 98753
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-39 Score=363.55 Aligned_cols=224 Identities=25% Similarity=0.437 Sum_probs=190.5
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CcceEEECCeecCCC--CHH
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGEIVIDGINISSI--GLH 1126 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p-----~~G~I~idg~di~~i--~~~ 1126 (1300)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++... +..
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~ 80 (250)
T PRK14262 3 IIEIENFSAYYGE--KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVT 80 (250)
T ss_pred eEEEEeeEEEeCC--ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHH
Confidence 5899999999974 3599999999999999999999999999999999999984 899999999998653 334
Q ss_pred HHhcccEEEcCCCCCCcccHHHhcCCC----CCC----CHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHH
Q 000755 1127 DLRSRLSIIPQDPTMFEGTVRNNLDPL----EEY----KDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQ 1198 (1300)
Q Consensus 1127 ~lr~~i~~vpQ~~~lf~gTvr~Nl~~~----~~~----~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQ 1198 (1300)
.+|++++|+||++.+|..|+++|+... ... .++++.++++.+++.+.+.. .......+||+||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~Gq~q 153 (250)
T PRK14262 81 EYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKS-------ELNKPGTRLSGGQQQ 153 (250)
T ss_pred HhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHH-------HHhCChhhcCHHHHH
Confidence 678889999999999999999999642 111 12346677888887654322 234556789999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHH
Q 000755 1199 LVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLL 1277 (1300)
Q Consensus 1199 rl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~ 1277 (1300)
|++||||++++|++|+|||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 154 r~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 154 RLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIV 233 (250)
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999999999999999999999999987667899999999998876 9999999999999999999998
Q ss_pred hcCCChHHH
Q 000755 1278 ENKSSSFAQ 1286 (1300)
Q Consensus 1278 ~~~~~~f~~ 1286 (1300)
+++...|.+
T Consensus 234 ~~~~~~~~~ 242 (250)
T PRK14262 234 ERPKNKLTE 242 (250)
T ss_pred hCCCChHHH
Confidence 655444443
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-39 Score=375.07 Aligned_cols=223 Identities=23% Similarity=0.364 Sum_probs=189.1
Q ss_pred eEEEEeeeeeeCCC-----------CCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCC
Q 000755 1054 EVDILNLQVRYAPH-----------LPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISS 1122 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~-----------~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~ 1122 (1300)
.++++|++++|+.. ...+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 59999999999631 2358999999999999999999999999999999999999999999999999988
Q ss_pred CCHHH---HhcccEEEcCCC--CCCc-ccHHHhcCC----C-CCCCH----HHHHHHHHHcCCcHHHHhhcCCCcccccc
Q 000755 1123 IGLHD---LRSRLSIIPQDP--TMFE-GTVRNNLDP----L-EEYKD----EEIWEALDKCQLGDEVRNKEGKLDSRVTE 1187 (1300)
Q Consensus 1123 i~~~~---lr~~i~~vpQ~~--~lf~-gTvr~Nl~~----~-~~~~d----~~i~~~l~~~~l~~~i~~~~~gLdt~v~e 1187 (1300)
++.++ +|++++||||+| .+++ .|+.+|+.. . ...+. +.+.++++.+++.+.+ ...
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~----------~~~ 157 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNL----------INR 157 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHH----------hcC
Confidence 87544 577899999998 4664 699999842 1 12332 3355678888874321 122
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhc-cCEEEEEeC
Q 000755 1188 NGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVID-SDMVLLLSH 1264 (1300)
Q Consensus 1188 ~G~~LSgGqrQrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~-~D~v~vl~~ 1264 (1300)
...+||||||||++|||||+.+|++||+||||++||+.+...|.+.|++..+ +.|+|+|||+++.+.. ||||+||++
T Consensus 158 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~ 237 (331)
T PRK15079 158 YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYL 237 (331)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 3467899999999999999999999999999999999999999999988643 7899999999999987 999999999
Q ss_pred CEEEEecChhhHHhcCCChHHH
Q 000755 1265 GIIEEYDSPTKLLENKSSSFAQ 1286 (1300)
Q Consensus 1265 G~i~e~g~~~~l~~~~~~~f~~ 1286 (1300)
|+|+|.|+++++++++...|.+
T Consensus 238 G~ive~g~~~~i~~~~~~py~~ 259 (331)
T PRK15079 238 GHAVELGTYDEVYHNPLHPYTK 259 (331)
T ss_pred CEEEEEcCHHHHHcCCCCHHHH
Confidence 9999999999999876555554
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=346.24 Aligned_cols=178 Identities=35% Similarity=0.576 Sum_probs=165.0
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEE
Q 000755 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSI 1134 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~ 1134 (1300)
|+++|++++|+...+++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++... ...+|++++|
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEE
Confidence 578999999976434699999999999999999999999999999999999999999999999988765 5667889999
Q ss_pred EcCCCCCCcccHHHhcCCCCCCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEE
Q 000755 1135 IPQDPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLV 1214 (1300)
Q Consensus 1135 vpQ~~~lf~gTvr~Nl~~~~~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~~iLl 1214 (1300)
+||++.+|+.|+++|+ ..+||+|||||++||||++++|++||
T Consensus 80 ~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~p~~ll 121 (178)
T cd03247 80 LNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAPIVL 121 (178)
T ss_pred EccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999989999997 35789999999999999999999999
Q ss_pred EeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhccCEEEEEeCCEEEEec
Q 000755 1215 LDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYD 1271 (1300)
Q Consensus 1215 LDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~~D~v~vl~~G~i~e~g 1271 (1300)
|||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||++++|++|++++.|
T Consensus 122 lDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 122 LDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999876789999999999999889999999999998764
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=354.92 Aligned_cols=202 Identities=24% Similarity=0.387 Sum_probs=177.8
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEE
Q 000755 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSI 1134 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~ 1134 (1300)
|+++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++... ...|++++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~ 76 (208)
T cd03268 1 LKTNDLTKTYGK--KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGA 76 (208)
T ss_pred CEEEEEEEEECC--eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEE
Confidence 478999999964 3699999999999999999999999999999999999999999999999988654 566788999
Q ss_pred EcCCCCCCc-ccHHHhcCCC---CCCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCC
Q 000755 1135 IPQDPTMFE-GTVRNNLDPL---EEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKS 1210 (1300)
Q Consensus 1135 vpQ~~~lf~-gTvr~Nl~~~---~~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~ 1210 (1300)
+||++.+|. .|+++|+.+. ...+++++.++++..++.+...+. ...||||||||++||||++++|
T Consensus 77 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~la~al~~~p 145 (208)
T cd03268 77 LIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKK-----------VKGFSLGMKQRLGIALALLGNP 145 (208)
T ss_pred ecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhh-----------HhhCCHHHHHHHHHHHHHhcCC
Confidence 999998875 6999998542 123466788889999887655443 3568999999999999999999
Q ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEec
Q 000755 1211 KVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYD 1271 (1300)
Q Consensus 1211 ~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g 1271 (1300)
++|||||||++||+.+.+.+.+.|++.. .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 146 DLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999998865 47899999999999987 9999999999998765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-39 Score=361.87 Aligned_cols=224 Identities=24% Similarity=0.433 Sum_probs=190.2
Q ss_pred CceEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCC--C---CcceEEECCeecCCC--C
Q 000755 1052 HGEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVE--P---TAGEIVIDGINISSI--G 1124 (1300)
Q Consensus 1052 ~g~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~--p---~~G~I~idg~di~~i--~ 1124 (1300)
++.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ | ++|+|.+||.++... .
T Consensus 2 ~~~l~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 2 NNKVKLEQLNVHFGK--NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred CcEEEEEEEEEEeCC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 367999999999974 359999999999999999999999999999999999986 4 689999999998643 3
Q ss_pred HHHHhcccEEEcCCCCCCc-ccHHHhcCCC----CCCC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChh
Q 000755 1125 LHDLRSRLSIIPQDPTMFE-GTVRNNLDPL----EEYK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMG 1195 (1300)
Q Consensus 1125 ~~~lr~~i~~vpQ~~~lf~-gTvr~Nl~~~----~~~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgG 1195 (1300)
...+|++++|+||++.+|. .|+++|+... ...+ ++++.++++.+++.+.+... ....+.+||+|
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LS~G 152 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDR-------LKSNAMELSGG 152 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHH-------hhCCcCcCCHH
Confidence 4567889999999999887 5999999631 1111 23466778888876544321 23356789999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChh
Q 000755 1196 QRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPT 1274 (1300)
Q Consensus 1196 qrQrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~ 1274 (1300)
||||++||||++.+|++|||||||++||+.+...+.+.|++..++.|||++||+++.+.. ||++++|++|++++.|+++
T Consensus 153 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14256 153 QQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETK 232 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999988767899999999999977 9999999999999999999
Q ss_pred hHHhcCCChH
Q 000755 1275 KLLENKSSSF 1284 (1300)
Q Consensus 1275 ~l~~~~~~~f 1284 (1300)
++..++...+
T Consensus 233 ~~~~~~~~~~ 242 (252)
T PRK14256 233 KIFTTPEKKQ 242 (252)
T ss_pred HHHhCCCcHH
Confidence 9987655433
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=368.34 Aligned_cols=213 Identities=23% Similarity=0.372 Sum_probs=187.0
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccE
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLS 1133 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~ 1133 (1300)
.++++|++++|++. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...++++++
T Consensus 3 ~l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 3 LIETRDLCYSYSGS-KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred eEEEEEEEEEeCCC-CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 37899999999643 24999999999999999999999999999999999999999999999999998777778889999
Q ss_pred EEcCCCC--CCcccHHHhcCCCC---CCC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHH
Q 000755 1134 IIPQDPT--MFEGTVRNNLDPLE---EYK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGR 1204 (1300)
Q Consensus 1134 ~vpQ~~~--lf~gTvr~Nl~~~~---~~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LAR 1204 (1300)
|+||++. +|+.|+++|+.... ..+ ++.+.++++.+++.+...+.+ ..||||||||++|||
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrl~lar 150 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVP-----------HHLSGGEKKRVAIAG 150 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHHHHHH
Confidence 9999983 67789999996321 222 234677888888876544433 478999999999999
Q ss_pred HHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHHh
Q 000755 1205 VLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLE 1278 (1300)
Q Consensus 1205 all~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~~ 1278 (1300)
||+.+|++|||||||++||+.+.+.+.+.|++..+ ++|||++||+++.+.+ ||||++|++|++++.|+++++++
T Consensus 151 aL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 227 (277)
T PRK13652 151 VIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFL 227 (277)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhc
Confidence 99999999999999999999999999999988653 6899999999999976 99999999999999999999875
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-39 Score=361.81 Aligned_cols=212 Identities=25% Similarity=0.368 Sum_probs=184.8
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHH-hccc
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDL-RSRL 1132 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~l-r~~i 1132 (1300)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+..+. |..+
T Consensus 2 ~i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 2 ILYLEGLSVSFDG--FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred eEEEEeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 3789999999975 359999999999999999999999999999999999999999999999999987776554 4579
Q ss_pred EEEcCCCCCCcc-cHHHhcCCCCC------------C---CHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhH
Q 000755 1133 SIIPQDPTMFEG-TVRNNLDPLEE------------Y---KDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQ 1196 (1300)
Q Consensus 1133 ~~vpQ~~~lf~g-Tvr~Nl~~~~~------------~---~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGq 1196 (1300)
+|+||++.+|.+ |+++|+..... . .++++.++++.+++.+.. .....+|||||
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~Ge 148 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEA-----------DRLAGLLSHGQ 148 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHH
Confidence 999999999987 99999864211 0 133466777777765432 23446799999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhh
Q 000755 1197 RQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTK 1275 (1300)
Q Consensus 1197 rQrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~ 1275 (1300)
|||++||||++++|++|+|||||++||+.+...+.+.|++..+++|||++||+++.+.. ||+|++|++|++++.|++++
T Consensus 149 ~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~ 228 (242)
T TIGR03411 149 KQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQ 228 (242)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHH
Confidence 99999999999999999999999999999999999999987667899999999999987 99999999999999999999
Q ss_pred HHh
Q 000755 1276 LLE 1278 (1300)
Q Consensus 1276 l~~ 1278 (1300)
+.+
T Consensus 229 ~~~ 231 (242)
T TIGR03411 229 VQA 231 (242)
T ss_pred Hhc
Confidence 874
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=363.64 Aligned_cols=218 Identities=28% Similarity=0.435 Sum_probs=187.5
Q ss_pred CceEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCC-------
Q 000755 1052 HGEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIG------- 1124 (1300)
Q Consensus 1052 ~g~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~------- 1124 (1300)
.+.++++|++++|++. .+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++..++
T Consensus 3 ~~~l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 3 ENKLNVIDLHKRYGEH--EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred CccEEEeeeEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 4679999999999753 5999999999999999999999999999999999999999999999999886421
Q ss_pred ------HHHHhcccEEEcCCCCCCcc-cHHHhcCCC----CCCC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCC
Q 000755 1125 ------LHDLRSRLSIIPQDPTMFEG-TVRNNLDPL----EEYK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENG 1189 (1300)
Q Consensus 1125 ------~~~lr~~i~~vpQ~~~lf~g-Tvr~Nl~~~----~~~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G 1189 (1300)
...+|++++|+||++.+|+. |+++|+... .... ++++.+++++.++.+... ....
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~----------~~~~ 150 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQ----------GKYP 150 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhh----------hCCc
Confidence 34567899999999999975 999998631 1112 245677888888765431 2345
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhc-cCEEEEEeCCEE
Q 000755 1190 ENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGII 1267 (1300)
Q Consensus 1190 ~~LSgGqrQrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i 1267 (1300)
..||||||||++|||||+++|++|||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+.. ||||++|++|++
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i 230 (257)
T PRK10619 151 VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 230 (257)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 6799999999999999999999999999999999999999999998865 37999999999999987 999999999999
Q ss_pred EEecChhhHHhcCC
Q 000755 1268 EEYDSPTKLLENKS 1281 (1300)
Q Consensus 1268 ~e~g~~~~l~~~~~ 1281 (1300)
++.|+++++.+.+.
T Consensus 231 ~~~~~~~~~~~~~~ 244 (257)
T PRK10619 231 EEEGAPEQLFGNPQ 244 (257)
T ss_pred EEeCCHHHhhhCcc
Confidence 99999999876543
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=356.03 Aligned_cols=202 Identities=28% Similarity=0.438 Sum_probs=177.3
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEE
Q 000755 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSI 1134 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~ 1134 (1300)
|+++|++++|+.. ++++|+||++++| ++||+||||||||||+++|+|+++|++|+|.++|.++...+ ..+|++++|
T Consensus 1 i~~~~~~~~~~~~--~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYGKK--RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGY 76 (211)
T ss_pred CEEEEEEEEECCE--EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheEE
Confidence 5789999999653 5999999999999 99999999999999999999999999999999999987766 677889999
Q ss_pred EcCCCCCCcc-cHHHhcCCC---CCCC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHH
Q 000755 1135 IPQDPTMFEG-TVRNNLDPL---EEYK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVL 1206 (1300)
Q Consensus 1135 vpQ~~~lf~g-Tvr~Nl~~~---~~~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARal 1206 (1300)
+||++.+|.+ |+++|+... .... ++++.++++.+++.+.... ...+||||||||++||||+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~al 145 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKK-----------KIGSLSGGMRRRVGIAQAL 145 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhC-----------chhhCCHHHHHHHHHHHHH
Confidence 9999999876 999998631 1111 3456778888888654332 2357999999999999999
Q ss_pred ccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEec
Q 000755 1207 LKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYD 1271 (1300)
Q Consensus 1207 l~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g 1271 (1300)
+++|++|||||||++||+.+.+.+.+.|++..++.|||++||+++.+.. |||+++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 146 VGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999987667999999999999976 9999999999998764
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=362.96 Aligned_cols=217 Identities=25% Similarity=0.416 Sum_probs=185.9
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCC----------
Q 000755 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIG---------- 1124 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~---------- 1124 (1300)
|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++..++
T Consensus 1 i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 78 (252)
T TIGR03005 1 VRFSDVTKRFGI--LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPAD 78 (252)
T ss_pred CEEEEEEEEeCC--eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccc
Confidence 578999999974 35999999999999999999999999999999999999999999999999987543
Q ss_pred ---HHHHhcccEEEcCCCCCCc-ccHHHhcCCC----CCC----CHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCC
Q 000755 1125 ---LHDLRSRLSIIPQDPTMFE-GTVRNNLDPL----EEY----KDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENW 1192 (1300)
Q Consensus 1125 ---~~~lr~~i~~vpQ~~~lf~-gTvr~Nl~~~----~~~----~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~L 1192 (1300)
...+|++++|+||++.+|. .|+++|+... ... .++++.++++.+++.+...+ ....|
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~L 147 (252)
T TIGR03005 79 EKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADH-----------MPAQL 147 (252)
T ss_pred hhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhc-----------Chhhc
Confidence 2356888999999998885 6999999642 111 13456777888877654433 34578
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhc-cCEEEEEeCCEEEE
Q 000755 1193 SMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGIIEE 1269 (1300)
Q Consensus 1193 SgGqrQrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e 1269 (1300)
|||||||++|||||+++|++|||||||++||+.+...+.+.|++..+ +.|+|++||+++.+.+ ||++++|++|++++
T Consensus 148 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T TIGR03005 148 SGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVE 227 (252)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998653 6899999999999976 99999999999999
Q ss_pred ecChhhHHhcCCChH
Q 000755 1270 YDSPTKLLENKSSSF 1284 (1300)
Q Consensus 1270 ~g~~~~l~~~~~~~f 1284 (1300)
.|+++++.+.+...+
T Consensus 228 ~g~~~~~~~~~~~~~ 242 (252)
T TIGR03005 228 QGKPDEIFRQPKEER 242 (252)
T ss_pred eCCHHHHhcCCCcHH
Confidence 999999986654333
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=362.61 Aligned_cols=219 Identities=24% Similarity=0.352 Sum_probs=193.2
Q ss_pred CceEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcc
Q 000755 1052 HGEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSR 1131 (1300)
Q Consensus 1052 ~g~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~ 1131 (1300)
.+.|+++|+++. . .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++| +
T Consensus 37 ~~~l~i~nls~~--~--~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-------------~ 99 (282)
T cd03291 37 DNNLFFSNLCLV--G--APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------------R 99 (282)
T ss_pred CCeEEEEEEEEe--c--ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-------------E
Confidence 457999999985 2 3599999999999999999999999999999999999999999999998 3
Q ss_pred cEEEcCCCCCCcccHHHhcCCCCCCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCC
Q 000755 1132 LSIIPQDPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSK 1211 (1300)
Q Consensus 1132 i~~vpQ~~~lf~gTvr~Nl~~~~~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~~ 1211 (1300)
++|+||++.+|++|+++|+.+.....+.++.++++.+++.+.+..++.+.++.+.+.+.+||+|||||++|||||+++|+
T Consensus 100 i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ 179 (282)
T cd03291 100 ISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDAD 179 (282)
T ss_pred EEEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999997643344456677888889988888888899999999999999999999999999999999
Q ss_pred EEEEeCCCcCCCHHHHHHHHHHH-HHhcCCcEEEEEeCChhhhhccCEEEEEeCCEEEEecChhhHHhcCCChHHHHH
Q 000755 1212 VLVLDEATASVDTATDNLIQQTL-RQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLV 1288 (1300)
Q Consensus 1212 iLlLDEpTs~lD~~t~~~i~~~l-~~~~~~~Tvi~iaHrl~~i~~~D~v~vl~~G~i~e~g~~~~l~~~~~~~f~~l~ 1288 (1300)
+|||||||++||+.+...+.+.+ ++..++.|||++||+++.+..||+|++|++|++++.|+++++.+. ...|.+.+
T Consensus 180 iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~-~~~~~~~~ 256 (282)
T cd03291 180 LYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSL-RPDFSSKL 256 (282)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhc-chHHHHHH
Confidence 99999999999999999888754 555557899999999999888999999999999999999998854 23444333
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=366.53 Aligned_cols=215 Identities=27% Similarity=0.436 Sum_probs=186.5
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccE
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLS 1133 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~ 1133 (1300)
.++++|++++|++..+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+...+|++++
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 86 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence 58999999999643456999999999999999999999999999999999999999999999999998777778899999
Q ss_pred EEcCCC--CCCcccHHHhcCCC---CCCCHH----HHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHH
Q 000755 1134 IIPQDP--TMFEGTVRNNLDPL---EEYKDE----EIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGR 1204 (1300)
Q Consensus 1134 ~vpQ~~--~lf~gTvr~Nl~~~---~~~~d~----~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LAR 1204 (1300)
|+||+| .++..|+++|+.+. ...+.+ .+.++++++++.+...+ ...+||||||||++|||
T Consensus 87 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~lar 155 (271)
T PRK13632 87 IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDK-----------EPQNLSGGQKQRVAIAS 155 (271)
T ss_pred EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhC-----------CcccCCHHHHHHHHHHH
Confidence 999998 34567999998642 112332 35567788877655443 34678999999999999
Q ss_pred HHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhccCEEEEEeCCEEEEecChhhHHhc
Q 000755 1205 VLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLEN 1279 (1300)
Q Consensus 1205 all~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~~D~v~vl~~G~i~e~g~~~~l~~~ 1279 (1300)
||+++|++|||||||++||+.+.+.+.+.|++..+ ++|||++||+++.+..||+|++|++|++++.|+++++.++
T Consensus 156 al~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 156 VLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999999998653 4899999999999877999999999999999999988753
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-39 Score=360.77 Aligned_cols=219 Identities=26% Similarity=0.440 Sum_probs=188.3
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCC-----cceEEECCeecCCC--CHH
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPT-----AGEIVIDGINISSI--GLH 1126 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~-----~G~I~idg~di~~i--~~~ 1126 (1300)
.|+++|++++|+. +++|+|+||+|++||++||+||||||||||+++|+|+++|+ +|+|.+||.++... +..
T Consensus 4 ~l~~~~l~~~~~~--~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 81 (251)
T PRK14249 4 KIKIRGVNFFYHK--HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVV 81 (251)
T ss_pred eEEEEEEEEEECC--eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChH
Confidence 6899999999974 35999999999999999999999999999999999999997 69999999998643 345
Q ss_pred HHhcccEEEcCCCCCCcccHHHhcCCCC---CC-C----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHH
Q 000755 1127 DLRSRLSIIPQDPTMFEGTVRNNLDPLE---EY-K----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQ 1198 (1300)
Q Consensus 1127 ~lr~~i~~vpQ~~~lf~gTvr~Nl~~~~---~~-~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQ 1198 (1300)
.+|++++|+||++.+|+.|+++|+.+.. .. . ++.+.++++.+++.+.+.. .....+.+||+||||
T Consensus 82 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~Gq~q 154 (251)
T PRK14249 82 NLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKD-------NLHKSGLALSGGQQQ 154 (251)
T ss_pred HhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhh-------HhhCCcccCCHHHHH
Confidence 6788999999999999889999996421 11 1 2335556777777654332 244567889999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHH
Q 000755 1199 LVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLL 1277 (1300)
Q Consensus 1199 rl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~ 1277 (1300)
|++|||||+.+|++|||||||++||+.+...+.+.|++..+++|||++||+++.+.+ ||+|++|++|++++.|+++++.
T Consensus 155 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14249 155 RLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987567899999999999988 8999999999999999999997
Q ss_pred hcCC
Q 000755 1278 ENKS 1281 (1300)
Q Consensus 1278 ~~~~ 1281 (1300)
..+.
T Consensus 235 ~~~~ 238 (251)
T PRK14249 235 SRPR 238 (251)
T ss_pred hCCC
Confidence 6544
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=376.63 Aligned_cols=213 Identities=25% Similarity=0.400 Sum_probs=184.2
Q ss_pred ceEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhccc
Q 000755 1053 GEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRL 1132 (1300)
Q Consensus 1053 g~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i 1132 (1300)
..|+++|++++|++. .+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...|+++
T Consensus 40 ~~i~i~nl~k~y~~~--~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~i 116 (340)
T PRK13536 40 VAIDLAGVSKSYGDK--AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARI 116 (340)
T ss_pred eeEEEEEEEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccE
Confidence 359999999999753 5999999999999999999999999999999999999999999999999987643 5678899
Q ss_pred EEEcCCCCCCc-ccHHHhcCCCC---CCCH----HHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHH
Q 000755 1133 SIIPQDPTMFE-GTVRNNLDPLE---EYKD----EEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGR 1204 (1300)
Q Consensus 1133 ~~vpQ~~~lf~-gTvr~Nl~~~~---~~~d----~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LAR 1204 (1300)
+|+||++.++. .|+++|+..+. ..+. +.+.++++.+++.+.. +. ...+||+|||||++|||
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~-------~~----~~~~LS~G~kqrv~lA~ 185 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKA-------DA----RVSDLSGGMKRRLTLAR 185 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-------CC----ChhhCCHHHHHHHHHHH
Confidence 99999998875 59999996422 1222 2345667777765432 22 23579999999999999
Q ss_pred HHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHHhc
Q 000755 1205 VLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLEN 1279 (1300)
Q Consensus 1205 all~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~~~ 1279 (1300)
||+.+|++|||||||+|||+.+...+.+.|++.. .++|||++||+++.+.+ ||+|++|++|++++.|+++++.++
T Consensus 186 aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 186 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 9999999999999999999999999999999865 47899999999999987 999999999999999999999754
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-39 Score=357.59 Aligned_cols=479 Identities=20% Similarity=0.292 Sum_probs=301.4
Q ss_pred eEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCeEEEEecCCcCCCCC
Q 000755 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGN 695 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~~ayv~Q~~~l~~~T 695 (1300)
+|.++|.+.+-. .+..+.|-||.|-.|..+++|||||-||||||+-|.----. |--+-.+-||.|+...-+.|
T Consensus 264 DIKiEnF~ISA~---Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~Rala----IPpnIDvLlCEQEvvad~t~ 336 (807)
T KOG0066|consen 264 DIKIENFDISAQ---GKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALA----IPPNIDVLLCEQEVVADSTS 336 (807)
T ss_pred cceeeeeeeecc---cceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhcc----CCCCCceEeeeeeeeecCcH
Confidence 477777776643 45788999999999999999999999999999998743211 00122356788876655555
Q ss_pred HHHHHhcC---------------------CCCCHHHHHHHHH---Hhcc---hHHHhh--ccCCCcccccCCC-CCCCHH
Q 000755 696 IEDNILFG---------------------KPMDREKYDRVLE---ACSL---KKDLEI--LSFGDQTVIGERG-INLSGG 745 (1300)
Q Consensus 696 i~eNI~fg---------------------~~~~~~~~~~vl~---~~~l---~~dl~~--l~~Gd~t~ige~g-~~LSGG 745 (1300)
--+.|+-. ..-..++..++.+ +.+. +..... -..|..-++-++. ..+|||
T Consensus 337 Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGG 416 (807)
T KOG0066|consen 337 AIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGG 416 (807)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCc
Confidence 44444422 1111233333221 1111 111110 1134555555555 459999
Q ss_pred HHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCcccc-CCEEEEEeCCeEE-EecC
Q 000755 746 QKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPA-ADLILVMKDGKIT-QAGK 823 (1300)
Q Consensus 746 QkqRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~-~~g~ 823 (1300)
-|-||+||||||-.|.+|.|||||++||-...-++ ++.+.++ .||.++|+|+-.||.. |..|+.|++-++. +.|+
T Consensus 417 WRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWL-dNYLQgW--kKTLLIVSHDQgFLD~VCtdIIHLD~qkLhyYrGN 493 (807)
T KOG0066|consen 417 WRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWL-DNYLQGW--KKTLLIVSHDQGFLDSVCTDIIHLDNQKLHYYRGN 493 (807)
T ss_pred eeeehhHHHHHhcCceeeeecCCccccccceeeeh-hhHHhhh--hheeEEEecccchHHHHHHHHhhhhhhhhhhhcch
Confidence 99999999999999999999999999999875444 4444444 4899999999999987 9999999998876 6777
Q ss_pred hHHHHhcCchHHHHHHHHHHHhhhhcccCCCCccccccccccCCCccccccccccCccccccccchhhhhhhHHHHHHHH
Q 000755 824 YNDILNSGTDFMVLVGAHQQALSALDSIEGGPVSERISMNKENGGMDTTNGVTMKEGNEDIQTDKVDEQYYIPSARELSR 903 (1300)
Q Consensus 824 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~~lp~grnr~s~D~v~~~~y~~~~r~l~r 903 (1300)
|.-+.+. |..-...+. +-|-..-++++.
T Consensus 494 Y~~FKKm---Y~Qk~~e~~-------------------------------------------------K~yekQeK~Lke 521 (807)
T KOG0066|consen 494 YTLFKKM---YAQKMQEHE-------------------------------------------------KNYEKQEKQLKE 521 (807)
T ss_pred HHHHHHH---HHHHHHHHH-------------------------------------------------HHHHHHHHHHHH
Confidence 7543221 111111111 011111112222
Q ss_pred HHhhhhhhHHHHHHHHhhchHHHHHhcchHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000755 904 LVGVCKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFHIAGAMEWLCFRLDMLSSLTFAFSLVLLISIP 983 (1300)
Q Consensus 904 l~~~~~sp~~~~~~E~l~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~~~~~ 983 (1300)
+...-+|.- . .|....+..........+.. .
T Consensus 522 lKa~GkS~K--------------q---AEkq~Ke~ltrKq~K~~~Kn--------------------------------q 552 (807)
T KOG0066|consen 522 LKAEGKSAK--------------Q---AEKQVKEQLTRKQKKGGKKN--------------------------------Q 552 (807)
T ss_pred HHhcCcchH--------------H---HHHHHHHHHHHHHHhccccc--------------------------------c
Confidence 211111100 0 00000000000000000000 0
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCCCCCccccCCCCCCCCCCceEEEEeee
Q 000755 984 KGVIEPAIAGLAVTYGLNLNMLQAWVIWNLCNLENKIISVERILQYTCI--SSEPPLVIEESRPDCSWPTHGEVDILNLQ 1061 (1300)
Q Consensus 984 ~g~~~~~~~gl~l~~~~~~~~~~~~~~~~~~~le~~~~sveRi~~~~~~--~~e~~~~~~~~~~~~~wp~~g~i~~~~v~ 1061 (1300)
...-+.+. ---..|-.+|.-- -+|+ +. -....+-+.||+
T Consensus 553 ~dded~ga----------------------------pELL~RpKEY~VkF~FPep---------~~--L~PPvLGlH~Vt 593 (807)
T KOG0066|consen 553 NDDEDAGA----------------------------PELLQRPKEYSVKFQFPEP---------TK--LNPPVLGLHDVT 593 (807)
T ss_pred CccccccC----------------------------HHHHhCchheEEEEecCCC---------CC--CCCCeeeccccc
Confidence 00000000 0001233333210 0111 11 112357789999
Q ss_pred eeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEEEcCCCC-
Q 000755 1062 VRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDPT- 1140 (1300)
Q Consensus 1062 ~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~vpQ~~~- 1140 (1300)
|.|+... |.+++++|-|.--.+|+||||||.|||||+++|.|-++|..|+..-+- |-+||+..|...
T Consensus 594 Fgy~gqk-pLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnh-----------rL~iG~FdQh~~E 661 (807)
T KOG0066|consen 594 FGYPGQK-PLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNH-----------RLRIGWFDQHANE 661 (807)
T ss_pred ccCCCCC-chhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccc-----------eeeeechhhhhHH
Confidence 9997654 589999999999999999999999999999999999999999765432 457899888753
Q ss_pred -C-CcccHHHhcCCCCCCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEeCC
Q 000755 1141 -M-FEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEA 1218 (1300)
Q Consensus 1141 -l-f~gTvr~Nl~~~~~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~~iLlLDEp 1218 (1300)
| -+.|--+.|.-.-...-++.+..|...||...... -....|||||+-|++||-.-++.|+|||||||
T Consensus 662 ~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHT----------ikikdLSGGQKaRValaeLal~~PDvlILDEP 731 (807)
T KOG0066|consen 662 ALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHT----------IKIKDLSGGQKARVALAELALGGPDVLILDEP 731 (807)
T ss_pred hhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccce----------EeeeecCCcchHHHHHHHHhcCCCCEEEecCC
Confidence 2 23366666643334455667778888877543211 12356999999999999999999999999999
Q ss_pred CcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhccC-EEEEEeCCEEE
Q 000755 1219 TASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSD-MVLLLSHGIIE 1268 (1300)
Q Consensus 1219 Ts~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~~D-~v~vl~~G~i~ 1268 (1300)
|++||.++...+-++|+++ ...||+|||+-..|...| ..+|+++-.|-
T Consensus 732 TNNLDIESIDALaEAIney--~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~ 780 (807)
T KOG0066|consen 732 TNNLDIESIDALAEAINEY--NGGVIMVSHDERLIVETDCNLWVVENQGID 780 (807)
T ss_pred CCCcchhhHHHHHHHHHhc--cCcEEEEecccceeeecCceEEEEccCChh
Confidence 9999999999999999987 568999999988886522 35555554443
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=357.03 Aligned_cols=203 Identities=28% Similarity=0.401 Sum_probs=173.2
Q ss_pred EEEEeEEEEecCC--CCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC--------------
Q 000755 617 IEIVDGNFAWDIS--SNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-------------- 680 (1300)
Q Consensus 617 I~i~~~~fs~~~~--~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g-------------- 680 (1300)
|+++++++.|... ....+|+||||+|++||+.+|+|.||+|||||+++|.++-.|++|+|.++|
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7899999999752 124689999999999999999999999999999999999999999999999
Q ss_pred --eEEEEecCCcCCC-CCHHHHHhcCCC---CC-HHHHHHH---HHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHH
Q 000755 681 --TKAYVAQSPWIQS-GNIEDNILFGKP---MD-REKYDRV---LEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRI 750 (1300)
Q Consensus 681 --~~ayv~Q~~~l~~-~Ti~eNI~fg~~---~~-~~~~~~v---l~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRi 750 (1300)
.|++++|++-+++ .||.+||.|..+ ++ .+..++| ++..+|.+.. +....+|||||||||
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~-----------~~yP~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKA-----------DRYPAQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhh-----------ccCchhcCcchhhHH
Confidence 3699999999987 799999999754 22 3333444 4445555433 344579999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhh--cCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHH
Q 000755 751 QIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL--LRSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDI 827 (1300)
Q Consensus 751 aLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~--l~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 827 (1300)
+|||||..+|+|||.|||||||||+|.+.|.+ ++... --|-|+++|||.++.++. |||+.||++|++++.|+..++
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~-LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~v 229 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILE-LLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEV 229 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHH-HHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHh
Confidence 99999999999999999999999999999986 44332 237899999999999987 999999999999999999998
Q ss_pred HhcC
Q 000755 828 LNSG 831 (1300)
Q Consensus 828 ~~~~ 831 (1300)
....
T Consensus 230 F~~P 233 (339)
T COG1135 230 FANP 233 (339)
T ss_pred hcCc
Confidence 7654
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=359.72 Aligned_cols=211 Identities=25% Similarity=0.437 Sum_probs=181.2
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHH-hcccE
Q 000755 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDL-RSRLS 1133 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~l-r~~i~ 1133 (1300)
++++|++++|++ .++|+|+||++++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+.... |++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (232)
T cd03218 1 LRAENLSKRYGK--RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIG 78 (232)
T ss_pred CeEEEEEEEeCC--EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEE
Confidence 478999999974 359999999999999999999999999999999999999999999999999987766553 56799
Q ss_pred EEcCCCCCCcc-cHHHhcCCC---CCCC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHH
Q 000755 1134 IIPQDPTMFEG-TVRNNLDPL---EEYK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRV 1205 (1300)
Q Consensus 1134 ~vpQ~~~lf~g-Tvr~Nl~~~---~~~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARa 1205 (1300)
|+||++.+|.+ |+++|+... .... ++++.++++.+++.+. ......+||||||||++||||
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~la~a 147 (232)
T cd03218 79 YLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHL-----------RKSKASSLSGGERRRVEIARA 147 (232)
T ss_pred EecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHHHHHHHHHHH
Confidence 99999999987 999998632 1112 1234556666665433 333456799999999999999
Q ss_pred HccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHHh
Q 000755 1206 LLKKSKVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLE 1278 (1300)
Q Consensus 1206 ll~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~~ 1278 (1300)
++.+|++|||||||++||+.+.+.+.+.|++.. .++|||++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 148 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 148 LATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 999999999999999999999999999998865 37899999999998877 99999999999999999998864
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-39 Score=360.22 Aligned_cols=219 Identities=25% Similarity=0.408 Sum_probs=188.2
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CcceEEECCeecCCC--CHH
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGEIVIDGINISSI--GLH 1126 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p-----~~G~I~idg~di~~i--~~~ 1126 (1300)
.++++|++++|+. +++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++... +..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (251)
T PRK14270 4 KMESKNLNLWYGE--KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVV 81 (251)
T ss_pred EEEEEEeEEEECC--eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHH
Confidence 6899999999974 3599999999999999999999999999999999999985 799999999998653 344
Q ss_pred HHhcccEEEcCCCCCCcccHHHhcCCCC---CC-C----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHH
Q 000755 1127 DLRSRLSIIPQDPTMFEGTVRNNLDPLE---EY-K----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQ 1198 (1300)
Q Consensus 1127 ~lr~~i~~vpQ~~~lf~gTvr~Nl~~~~---~~-~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQ 1198 (1300)
..|++++|+||++.+|+.|+++|+.+.. .. . .+++.++++.+++.+.+.. ........||+||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~q 154 (251)
T PRK14270 82 ELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKD-------DLKKSALKLSGGQQQ 154 (251)
T ss_pred HHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhh-------HhhCCcccCCHHHHH
Confidence 6788899999999999999999996421 11 1 2345678888887543322 123456789999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHH
Q 000755 1199 LVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLL 1277 (1300)
Q Consensus 1199 rl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~ 1277 (1300)
|++||||++++|+||||||||++||+.+...+.+.|++..++.|||++||+++.+.. ||||++|++|++++.|+++++.
T Consensus 155 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 155 RLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHh
Confidence 999999999999999999999999999999999999987667899999999999887 9999999999999999999998
Q ss_pred hcCC
Q 000755 1278 ENKS 1281 (1300)
Q Consensus 1278 ~~~~ 1281 (1300)
.++.
T Consensus 235 ~~~~ 238 (251)
T PRK14270 235 LEPQ 238 (251)
T ss_pred cCCC
Confidence 6543
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-39 Score=363.34 Aligned_cols=224 Identities=28% Similarity=0.465 Sum_probs=188.6
Q ss_pred CCCceEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCC-----CCcceEEECCeecCC--
Q 000755 1050 PTHGEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVE-----PTAGEIVIDGINISS-- 1122 (1300)
Q Consensus 1050 p~~g~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~-----p~~G~I~idg~di~~-- 1122 (1300)
|....++++|++++|++. ++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++..
T Consensus 20 ~~~~~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 97 (271)
T PRK14238 20 PKKVVFDTQNLNLWYGED--HALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKS 97 (271)
T ss_pred CCceEEEEeeeEEEECCc--ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccc
Confidence 334479999999999753 59999999999999999999999999999999999997 699999999999853
Q ss_pred CCHHHHhcccEEEcCCCCCCcccHHHhcCCC---CCCCH-----HHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCCh
Q 000755 1123 IGLHDLRSRLSIIPQDPTMFEGTVRNNLDPL---EEYKD-----EEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSM 1194 (1300)
Q Consensus 1123 i~~~~lr~~i~~vpQ~~~lf~gTvr~Nl~~~---~~~~d-----~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSg 1194 (1300)
.+...+|++++|+||++.+|..|+++|+.+. ....+ +.+.++++..++.+.+ .......+.+|||
T Consensus 98 ~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l-------~~~~~~~~~~LSg 170 (271)
T PRK14238 98 YSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDEL-------KDRLHDNAYGLSG 170 (271)
T ss_pred ccHHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchH-------HHHHhcCcccCCH
Confidence 3456678899999999999988999999632 12221 2234556666543322 2233456678999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecCh
Q 000755 1195 GQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSP 1273 (1300)
Q Consensus 1195 GqrQrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~ 1273 (1300)
|||||++|||||+++|++|||||||++||+.+...+.+.|++..+++|||++||+++.+.. ||+|++|++|++++.|++
T Consensus 171 Ge~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~ 250 (271)
T PRK14238 171 GQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDT 250 (271)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999987667999999999999887 999999999999999999
Q ss_pred hhHHhcCCC
Q 000755 1274 TKLLENKSS 1282 (1300)
Q Consensus 1274 ~~l~~~~~~ 1282 (1300)
+++.+++..
T Consensus 251 ~~~~~~~~~ 259 (271)
T PRK14238 251 DKIFSNPSD 259 (271)
T ss_pred HHHHcCCCC
Confidence 999876543
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-39 Score=368.05 Aligned_cols=216 Identities=26% Similarity=0.429 Sum_probs=189.1
Q ss_pred ceEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCc---ceEEECCeecCCCCHHHHh
Q 000755 1053 GEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTA---GEIVIDGINISSIGLHDLR 1129 (1300)
Q Consensus 1053 g~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~---G~I~idg~di~~i~~~~lr 1129 (1300)
+.|+++|++++|++...++|+|+||+|++||++||+|+||||||||+++|+|+++|++ |+|.+||.++...+...+|
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 4699999999997543459999999999999999999999999999999999999998 8999999999877777788
Q ss_pred cccEEEcCCC--CCCcccHHHhcCCC---CCCCH----HHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHH
Q 000755 1130 SRLSIIPQDP--TMFEGTVRNNLDPL---EEYKD----EEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLV 1200 (1300)
Q Consensus 1130 ~~i~~vpQ~~--~lf~gTvr~Nl~~~---~~~~d----~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl 1200 (1300)
++++|+||+| .+++.|+++|+.+. ...+. +++.++++.+++.+.....+ .+||+|||||+
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LS~G~~qrv 152 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP-----------ANLSGGQKQRV 152 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHH
Confidence 8999999998 35678999999642 12233 34677888888876554443 57899999999
Q ss_pred HHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhccCEEEEEeCCEEEEecChhhHHh
Q 000755 1201 CLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLE 1278 (1300)
Q Consensus 1201 ~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~~D~v~vl~~G~i~e~g~~~~l~~ 1278 (1300)
+|||||+.+|++|||||||++||+.+...+.+.|++..+ ++|||++||+++.+..||+|++|++|++++.|+++++.+
T Consensus 153 ~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 153 AIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999998653 689999999999997799999999999999999998875
Q ss_pred c
Q 000755 1279 N 1279 (1300)
Q Consensus 1279 ~ 1279 (1300)
.
T Consensus 233 ~ 233 (282)
T PRK13640 233 K 233 (282)
T ss_pred C
Confidence 3
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-39 Score=372.21 Aligned_cols=224 Identities=25% Similarity=0.371 Sum_probs=189.1
Q ss_pred eEEEEeeeeeeCCC--------CCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCH
Q 000755 1054 EVDILNLQVRYAPH--------LPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGL 1125 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~--------~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~ 1125 (1300)
.|+++|+++.|+.. ...+|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.|+..++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 58999999999631 2368999999999999999999999999999999999999999999999999988765
Q ss_pred H---HHhcccEEEcCCCC--CCcc-cHHHhcCC----CCCCC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCC
Q 000755 1126 H---DLRSRLSIIPQDPT--MFEG-TVRNNLDP----LEEYK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGEN 1191 (1300)
Q Consensus 1126 ~---~lr~~i~~vpQ~~~--lf~g-Tvr~Nl~~----~~~~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~ 1191 (1300)
. .+|++++||||+|. +++. |+.+|+.. ..... .+++.++++.+++.+.. ++ .....
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~------~~----~~p~~ 154 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEH------YD----RYPHM 154 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHH------hc----CCCcc
Confidence 4 46778999999994 5543 88888741 11122 24567889999885321 22 23467
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhc-cCEEEEEeCCEEE
Q 000755 1192 WSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGIIE 1268 (1300)
Q Consensus 1192 LSgGqrQrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~ 1268 (1300)
||||||||++|||||+.+|++||+||||++||..+...|.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|+|+
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCV 234 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999988643 7899999999999987 9999999999999
Q ss_pred EecChhhHHhcCCChHHHH
Q 000755 1269 EYDSPTKLLENKSSSFAQL 1287 (1300)
Q Consensus 1269 e~g~~~~l~~~~~~~f~~l 1287 (1300)
|.|+++++++++...|.+.
T Consensus 235 e~g~~~~~~~~p~hpyt~~ 253 (327)
T PRK11308 235 EKGTKEQIFNNPRHPYTQA 253 (327)
T ss_pred EECCHHHHhcCCCCHHHHH
Confidence 9999999998765555543
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-39 Score=360.70 Aligned_cols=223 Identities=24% Similarity=0.427 Sum_probs=192.0
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCC-----CCcceEEECCeecCCC--CHH
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVE-----PTAGEIVIDGINISSI--GLH 1126 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~-----p~~G~I~idg~di~~i--~~~ 1126 (1300)
.++++||++.|++ .++|+|+||+|++||++||+|+||||||||+++|+|+.+ |++|+|.+||.+++.. +..
T Consensus 3 ~l~~~~v~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 80 (250)
T PRK14266 3 RIEVENLNTYFDD--AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVV 80 (250)
T ss_pred EEEEEeEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHH
Confidence 4789999999974 359999999999999999999999999999999999975 4899999999998653 456
Q ss_pred HHhcccEEEcCCCCCCcccHHHhcCCC---CC-CC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHH
Q 000755 1127 DLRSRLSIIPQDPTMFEGTVRNNLDPL---EE-YK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQ 1198 (1300)
Q Consensus 1127 ~lr~~i~~vpQ~~~lf~gTvr~Nl~~~---~~-~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQ 1198 (1300)
.+|++++|+||++.+|..|+++|+... .. .+ ++.+.++++.+++.+.+... ....+.+||+||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~LS~Gq~q 153 (250)
T PRK14266 81 ELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDK-------LDKSALGLSGGQQQ 153 (250)
T ss_pred HHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHH-------HhCCcccCCHHHHH
Confidence 778899999999999999999999642 11 11 23466778888887655432 23456789999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHH
Q 000755 1199 LVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLL 1277 (1300)
Q Consensus 1199 rl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~ 1277 (1300)
|++|||||+++|++|+|||||++||+.+...+.+.|++..+++|||++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14266 154 RLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIF 233 (250)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667999999999999988 9999999999999999999998
Q ss_pred hcCCChHH
Q 000755 1278 ENKSSSFA 1285 (1300)
Q Consensus 1278 ~~~~~~f~ 1285 (1300)
+.+...+.
T Consensus 234 ~~~~~~~~ 241 (250)
T PRK14266 234 INPKDKRT 241 (250)
T ss_pred hCCCChHH
Confidence 76655543
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=355.33 Aligned_cols=217 Identities=26% Similarity=0.407 Sum_probs=191.3
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCe---ecCCCCHHHHhc
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGI---NISSIGLHDLRS 1130 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~---di~~i~~~~lr~ 1130 (1300)
.|+++|+++.|+.. .+++|||++|+.||.+|+.||||||||||+++|+|+..|++|+|.+||. |.++...+ .+
T Consensus 2 ~i~i~~~~~~~~~~--~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~--~R 77 (345)
T COG1118 2 SIRINNVKKRFGAF--GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVR--DR 77 (345)
T ss_pred ceeehhhhhhcccc--cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchh--hc
Confidence 47888999988764 5899999999999999999999999999999999999999999999999 77664433 36
Q ss_pred ccEEEcCCCCCCc-ccHHHhcCCCCC---------CCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHH
Q 000755 1131 RLSIIPQDPTMFE-GTVRNNLDPLEE---------YKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLV 1200 (1300)
Q Consensus 1131 ~i~~vpQ~~~lf~-gTvr~Nl~~~~~---------~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl 1200 (1300)
+||+|+|+..+|. .||.+|+.+.-. ..+..+.+.|+.|+|...-++.| ..||||||||+
T Consensus 78 ~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----------~QLSGGQrQRV 146 (345)
T COG1118 78 KVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP-----------AQLSGGQRQRV 146 (345)
T ss_pred ceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc-----------hhcChHHHHHH
Confidence 7999999999986 599999976431 23456777899999987776666 45799999999
Q ss_pred HHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHH
Q 000755 1201 CLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLL 1277 (1300)
Q Consensus 1201 ~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~ 1277 (1300)
||||||..+|++|+||||.++||..-...+.+-|++... +.|+++||||.+++.. ||||+||++|+|...|+|+|+.
T Consensus 147 ALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~ 226 (345)
T COG1118 147 ALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVY 226 (345)
T ss_pred HHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHh
Confidence 999999999999999999999999999999999988543 7899999999999988 9999999999999999999999
Q ss_pred hcCCChHH
Q 000755 1278 ENKSSSFA 1285 (1300)
Q Consensus 1278 ~~~~~~f~ 1285 (1300)
..+.+.|-
T Consensus 227 ~~P~s~fV 234 (345)
T COG1118 227 DHPASRFV 234 (345)
T ss_pred cCCCccce
Confidence 98888764
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-39 Score=359.40 Aligned_cols=213 Identities=23% Similarity=0.383 Sum_probs=183.1
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCC--HHHHhccc
Q 000755 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIG--LHDLRSRL 1132 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~--~~~lr~~i 1132 (1300)
++++|++++|++ +++|+|+||++++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+ ...+|+++
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 79 (240)
T PRK09493 2 IEFKNVSKHFGP--TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEA 79 (240)
T ss_pred EEEEeEEEEECC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhce
Confidence 689999999974 35999999999999999999999999999999999999999999999999987643 34567889
Q ss_pred EEEcCCCCCCc-ccHHHhcCCCC----CCC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHH
Q 000755 1133 SIIPQDPTMFE-GTVRNNLDPLE----EYK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLG 1203 (1300)
Q Consensus 1133 ~~vpQ~~~lf~-gTvr~Nl~~~~----~~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LA 1203 (1300)
+|+||++.+|. .|+++|+.+.. ... ++.+.++++..++.+...+ ....||+|||||++||
T Consensus 80 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~qrv~la 148 (240)
T PRK09493 80 GMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHH-----------YPSELSGGQQQRVAIA 148 (240)
T ss_pred EEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhc-----------ChhhcCHHHHHHHHHH
Confidence 99999998886 59999986421 111 2345567777776544333 3467899999999999
Q ss_pred HHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHHhcC
Q 000755 1204 RVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENK 1280 (1300)
Q Consensus 1204 Rall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~~~~ 1280 (1300)
||++++|++|+|||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++++++
T Consensus 149 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 227 (240)
T PRK09493 149 RALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNP 227 (240)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcCC
Confidence 99999999999999999999999999999998864 37899999999999976 9999999999999999999987654
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-39 Score=365.98 Aligned_cols=213 Identities=24% Similarity=0.410 Sum_probs=184.3
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCC-HHHHhcccE
Q 000755 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIG-LHDLRSRLS 1133 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~-~~~lr~~i~ 1133 (1300)
++++|++++|++. +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+ ...++++++
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 2 IRLENVSYSYPDG-TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred EEEEEEEEEcCCC-CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 7899999999643 35999999999999999999999999999999999999999999999999997765 356788999
Q ss_pred EEcCCCC--CCcccHHHhcCCCCC---CC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHH
Q 000755 1134 IIPQDPT--MFEGTVRNNLDPLEE---YK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGR 1204 (1300)
Q Consensus 1134 ~vpQ~~~--lf~gTvr~Nl~~~~~---~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LAR 1204 (1300)
|+||+|. ++..|+++|+.+... .+ ++.+.++++.+++.+.... .+..||+|||||++|||
T Consensus 81 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~qrv~lar 149 (274)
T PRK13644 81 IVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHR-----------SPKTLSGGQGQCVALAG 149 (274)
T ss_pred EEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcC-----------CcccCCHHHHHHHHHHH
Confidence 9999985 566799999964321 22 3346677888877654333 34578999999999999
Q ss_pred HHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhccCEEEEEeCCEEEEecChhhHHhc
Q 000755 1205 VLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLEN 1279 (1300)
Q Consensus 1205 all~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~~D~v~vl~~G~i~e~g~~~~l~~~ 1279 (1300)
||+++|+||||||||++||+.+...+.+.|++.. ++.|||++||+++.+..||+|++|++|++++.|+++++...
T Consensus 150 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 150 ILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999999999999999998864 47899999999999977999999999999999999998653
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=372.08 Aligned_cols=212 Identities=25% Similarity=0.374 Sum_probs=182.6
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccE
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLS 1133 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~ 1133 (1300)
.|+++|++++|++. .+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... ....|++++
T Consensus 4 ~i~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~ 80 (303)
T TIGR01288 4 AIDLVGVSKSYGDK--VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAIG 80 (303)
T ss_pred EEEEEeEEEEeCCe--EEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcEE
Confidence 58999999999753 599999999999999999999999999999999999999999999999998653 356788999
Q ss_pred EEcCCCCCCc-ccHHHhcCCC---CCCCH----HHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHH
Q 000755 1134 IIPQDPTMFE-GTVRNNLDPL---EEYKD----EEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRV 1205 (1300)
Q Consensus 1134 ~vpQ~~~lf~-gTvr~Nl~~~---~~~~d----~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARa 1205 (1300)
|+||++.++. .|+++|+... ...+. +.+.++++.+++.+.. +. ....||||||||++||||
T Consensus 81 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~-------~~----~~~~LSgG~~qrv~la~a 149 (303)
T TIGR01288 81 VVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKA-------DV----RVALLSGGMKRRLTLARA 149 (303)
T ss_pred EEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHh-------cC----chhhCCHHHHHHHHHHHH
Confidence 9999998885 5999998632 11232 2345567777765432 22 235799999999999999
Q ss_pred HccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHHhc
Q 000755 1206 LLKKSKVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLEN 1279 (1300)
Q Consensus 1206 ll~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~~~ 1279 (1300)
|+.+|++|||||||++||+.+.+.+.+.|++.. ++.|||++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 150 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 150 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999999999864 47899999999999987 999999999999999999998754
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=335.33 Aligned_cols=212 Identities=24% Similarity=0.385 Sum_probs=186.9
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEE
Q 000755 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSI 1134 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~ 1134 (1300)
+++.+++++|++. ..+++||||+++.||++||.|+|||||||++++|..++.|++|+|++||.|+... +...|++||+
T Consensus 2 l~v~~l~K~y~~~-v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~-p~~vrr~IGV 79 (245)
T COG4555 2 LEVTDLTKSYGSK-VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRD-PSFVRRKIGV 79 (245)
T ss_pred eeeeehhhhccCH-HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccC-hHHHhhhcce
Confidence 6889999999873 3489999999999999999999999999999999999999999999999999765 4667899999
Q ss_pred EcCCCCCCcc-cHHHhcCCCC---CCC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHH
Q 000755 1135 IPQDPTMFEG-TVRNNLDPLE---EYK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVL 1206 (1300)
Q Consensus 1135 vpQ~~~lf~g-Tvr~Nl~~~~---~~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARal 1206 (1300)
++-+.-++.. |+||||.++. +.+ ..++.+..+..++.+...+.. .+||-|+|||++|||||
T Consensus 80 l~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv-----------~~~S~G~kqkV~iARAl 148 (245)
T COG4555 80 LFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRV-----------GEFSTGMKQKVAIARAL 148 (245)
T ss_pred ecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHH-----------hhhchhhHHHHHHHHHH
Confidence 9977777754 9999997653 223 345667777778777765543 35799999999999999
Q ss_pred ccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC-CcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHHhc
Q 000755 1207 LKKSKVLVLDEATASVDTATDNLIQQTLRQHFS-DCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLEN 1279 (1300)
Q Consensus 1207 l~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~-~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~~~ 1279 (1300)
.++|+++||||||||||..+...+++.|++... +++||+.||.+++++. ||||+++++|+++..|+++++.+.
T Consensus 149 vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 149 VHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred hcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 999999999999999999999999999998765 8999999999999997 999999999999999999999764
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-39 Score=361.01 Aligned_cols=225 Identities=25% Similarity=0.421 Sum_probs=190.8
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CcceEEECCeecCCC--CHH
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGEIVIDGINISSI--GLH 1126 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p-----~~G~I~idg~di~~i--~~~ 1126 (1300)
.|+++|++++|++ +.+|+|+||+|++||++||+||||||||||+++|+|+.+| ++|+|.+||.++... +..
T Consensus 6 ~i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (253)
T PRK14261 6 ILSTKNLNLWYGE--KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83 (253)
T ss_pred eEEEeeeEEEECC--eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence 5899999999964 3599999999999999999999999999999999999763 489999999998765 445
Q ss_pred HHhcccEEEcCCCCCCcccHHHhcCCCCC----CC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHH
Q 000755 1127 DLRSRLSIIPQDPTMFEGTVRNNLDPLEE----YK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQ 1198 (1300)
Q Consensus 1127 ~lr~~i~~vpQ~~~lf~gTvr~Nl~~~~~----~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQ 1198 (1300)
..|++++|+||++.+|+.|+++|+.+... .. ++.+.++++.+++.+.+. +.....+.+||+||||
T Consensus 84 ~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~q 156 (253)
T PRK14261 84 ALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVK-------DRLHDSALSLSGGQQQ 156 (253)
T ss_pred hhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhH-------HHhhcChhhCCHHHHH
Confidence 67888999999999998999999974311 11 234566777777654332 2244566789999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHH
Q 000755 1199 LVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLL 1277 (1300)
Q Consensus 1199 rl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~ 1277 (1300)
|++||||++.+|+++||||||++||+.+.+.+.+.|++..+++|||++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 157 RLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIF 236 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHH
Confidence 999999999999999999999999999999999999987667899999999999976 9999999999999999999998
Q ss_pred hcCCChHHHH
Q 000755 1278 ENKSSSFAQL 1287 (1300)
Q Consensus 1278 ~~~~~~f~~l 1287 (1300)
+++...+.+.
T Consensus 237 ~~~~~~~~~~ 246 (253)
T PRK14261 237 ENPHEELTEN 246 (253)
T ss_pred hCCCcHHHHH
Confidence 6654444443
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-39 Score=354.76 Aligned_cols=203 Identities=27% Similarity=0.403 Sum_probs=173.8
Q ss_pred EEEEeeeeeeCCCC--CcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHH---Hh
Q 000755 1055 VDILNLQVRYAPHL--PLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHD---LR 1129 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~--~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~---lr 1129 (1300)
++++||+++|++.. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++..++..+ +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68999999996421 35999999999999999999999999999999999999999999999999998876554 33
Q ss_pred -cccEEEcCCCCCCc-ccHHHhcCCC---CCCC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHH
Q 000755 1130 -SRLSIIPQDPTMFE-GTVRNNLDPL---EEYK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLV 1200 (1300)
Q Consensus 1130 -~~i~~vpQ~~~lf~-gTvr~Nl~~~---~~~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl 1200 (1300)
++++|+||++.+|+ .|+++|+... .... .+++.++++.+++.+...+ ....||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINH-----------RPSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhC-----------ChhhCCHHHHHHH
Confidence 67999999999886 4999998641 1122 2346677777777544333 3357899999999
Q ss_pred HHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc--CCcEEEEEeCChhhhhccCEEEEEeCCEEE
Q 000755 1201 CLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF--SDCTVITIAHRITSVIDSDMVLLLSHGIIE 1268 (1300)
Q Consensus 1201 ~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~iaHrl~~i~~~D~v~vl~~G~i~ 1268 (1300)
+|||||+++|++|||||||++||+.+...+.+.|++.. .++|||++||+++.+..||+|++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999999999999864 368999999999999889999999999985
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-39 Score=363.60 Aligned_cols=222 Identities=27% Similarity=0.436 Sum_probs=190.8
Q ss_pred CCceEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CcceEEECCeecCC--C
Q 000755 1051 THGEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGEIVIDGINISS--I 1123 (1300)
Q Consensus 1051 ~~g~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p-----~~G~I~idg~di~~--i 1123 (1300)
..+.++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++.. .
T Consensus 22 ~~~~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 22 EQTALEVRNLNLFYGD--KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred CCcEEEEEEEEEEECC--eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 3457999999999965 3599999999999999999999999999999999999884 89999999999864 3
Q ss_pred CHHHHhcccEEEcCCCCCCcccHHHhcCCC---CCC-C----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChh
Q 000755 1124 GLHDLRSRLSIIPQDPTMFEGTVRNNLDPL---EEY-K----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMG 1195 (1300)
Q Consensus 1124 ~~~~lr~~i~~vpQ~~~lf~gTvr~Nl~~~---~~~-~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgG 1195 (1300)
+...+|++++|+||++.+|..|+++|+.+. ... . ++.+.++++.+++.+.+.. .....+.+||+|
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G 172 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKD-------RLHENAFGLSGG 172 (272)
T ss_pred CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHH-------HhhCCcccCCHH
Confidence 455678899999999999988999998642 111 1 2346778888887654332 234556789999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChh
Q 000755 1196 QRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPT 1274 (1300)
Q Consensus 1196 qrQrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~ 1274 (1300)
||||++|||||+++|++|||||||++||+.+...+.+.|++..++.|||++||+++.+.. ||+|++|++|++++.|+++
T Consensus 173 q~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 252 (272)
T PRK14236 173 QQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTD 252 (272)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHH
Confidence 999999999999999999999999999999999999999987667899999999999876 9999999999999999999
Q ss_pred hHHhcCC
Q 000755 1275 KLLENKS 1281 (1300)
Q Consensus 1275 ~l~~~~~ 1281 (1300)
++.+++.
T Consensus 253 ~~~~~~~ 259 (272)
T PRK14236 253 TLFTSPA 259 (272)
T ss_pred HHhcCCC
Confidence 9986543
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=405.53 Aligned_cols=353 Identities=22% Similarity=0.329 Sum_probs=238.9
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHccCC--CEEEEecCCCCCCHHHHHHHHHHHHHhh-cCCcEEEEEecCCCccccCCEEE
Q 000755 735 IGERGINLSGGQKQRIQIARALYQDA--DIYLFDDPFSAVDAHTGSHLFKEVLLGL-LRSKTVIYVTHQVEFLPAADLIL 811 (1300)
Q Consensus 735 ige~g~~LSGGQkqRiaLARAly~~~--~illLDep~saLD~~t~~~i~~~~~~~~-l~~~TvIlvtH~~~~l~~~d~i~ 811 (1300)
.+....+|||||||||+|||||..+| ++|||||||++||++....+++ .+..+ .+|+|||+|+|+++.+..||+|+
T Consensus 483 l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~-~L~~L~~~G~TVIvVeH~~~~i~~aD~vi 561 (943)
T PRK00349 483 LSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIE-TLKHLRDLGNTLIVVEHDEDTIRAADYIV 561 (943)
T ss_pred CCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHhCCEEE
Confidence 47788899999999999999999997 9999999999999999999876 44444 35899999999999998899999
Q ss_pred EE------eCCeEEEecChHHHHhcCchHHHHHHHHHHHhhhhcccCCCCccccccccccCCCccccccccccCcccccc
Q 000755 812 VM------KDGKITQAGKYNDILNSGTDFMVLVGAHQQALSALDSIEGGPVSERISMNKENGGMDTTNGVTMKEGNEDIQ 885 (1300)
Q Consensus 812 ~l------~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~~lp~grnr~s 885 (1300)
+| ++|+|+..|+++++.........
T Consensus 562 ~LgpgaG~~~G~iv~~g~~~e~~~~~~~l~~------------------------------------------------- 592 (943)
T PRK00349 562 DIGPGAGVHGGEVVASGTPEEIMKNPNSLTG------------------------------------------------- 592 (943)
T ss_pred EeccccCCCCCEEeeccCHHHHhcChhheee-------------------------------------------------
Confidence 99 99999999998887532100000
Q ss_pred ccchhhhhhhHHHHHHHHHHhhhhhhHHHHHHHHhhchHHHHHhcchHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Q 000755 886 TDKVDEQYYIPSARELSRLVGVCKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFHIAGAMEWLCFRLD 965 (1300)
Q Consensus 886 ~D~v~~~~y~~~~r~l~rl~~~~~sp~~~~~~E~l~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~ 965 (1300)
. |+
T Consensus 593 ------~-~l---------------------------------------------------------------------- 595 (943)
T PRK00349 593 ------Q-YL---------------------------------------------------------------------- 595 (943)
T ss_pred ------h-hh----------------------------------------------------------------------
Confidence 0 00
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccCCC
Q 000755 966 MLSSLTFAFSLVLLISIPKGVIEPAIAGLAVTYGLNLNMLQAWVIWNLCNLENKIISVERILQYTCISSEPPLVIEESRP 1045 (1300)
Q Consensus 966 ~~~~~~~~~~~~~~~~~~~g~~~~~~~gl~l~~~~~~~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~ 1045 (1300)
.+.. . ...+.. ..+
T Consensus 596 ------------------~~~~-------------------------------------~----~~~~~~-------~~~ 609 (943)
T PRK00349 596 ------------------SGKK-------------------------------------K----IEVPKE-------RRK 609 (943)
T ss_pred ------------------cccc-------------------------------------c----cccccc-------ccC
Confidence 0000 0 000000 000
Q ss_pred CCCCCCCceEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHh---------cCCCCCcceEEEC
Q 000755 1046 DCSWPTHGEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLF---------RIVEPTAGEIVID 1116 (1300)
Q Consensus 1046 ~~~wp~~g~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~---------gl~~p~~G~I~id 1116 (1300)
+..+.++++|++. ..|+|+|++|++||++||+|+||||||||++-++ +...+..+...++
T Consensus 610 ----~~~~~L~v~~l~~-------~~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~l~~~~~~~~~~~~~~~~~~~~~~ 678 (943)
T PRK00349 610 ----GNGKFLKLKGARE-------NNLKNVDVEIPLGKFTCVTGVSGSGKSTLINETLYKALARKLNGAKKVPGKHKEIE 678 (943)
T ss_pred ----CCcceEEecCCcc-------CCcCceEEEEeCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHhcccccCCCCCcccc
Confidence 1123588888862 2599999999999999999999999999998764 1111223333333
Q ss_pred Ce------------ecCC---------CC-HHHHhccc---------EEEcCCCCCCc-----------ccHHHhcCCCC
Q 000755 1117 GI------------NISS---------IG-LHDLRSRL---------SIIPQDPTMFE-----------GTVRNNLDPLE 1154 (1300)
Q Consensus 1117 g~------------di~~---------i~-~~~lr~~i---------~~vpQ~~~lf~-----------gTvr~Nl~~~~ 1154 (1300)
|. ++.. .+ ...+|.-+ +|-++.-.+.. |++..|+.+..
T Consensus 679 g~~~~~~~v~vdQ~pig~~~RS~~~Ty~g~~d~iR~lfa~~~~a~~~g~~~~~FS~N~~~G~C~~C~G~G~~~~~~~f~~ 758 (943)
T PRK00349 679 GLEHLDKVIDIDQSPIGRTPRSNPATYTGVFDPIRELFAGTPEAKARGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLP 758 (943)
T ss_pred cccCCCceEEEecCCCCCCCCCCceeeccccHHHHHHhccCccccccCCCcccCCCCCCCCCCCcccccceEEEEeccCC
Confidence 32 2210 00 11223322 22222211111 23443332211
Q ss_pred C------------------------CCHH-----HHHHHHHHc----CCcHHHHhh-cCCCcc-ccccCCCCCChhHHHH
Q 000755 1155 E------------------------YKDE-----EIWEALDKC----QLGDEVRNK-EGKLDS-RVTENGENWSMGQRQL 1199 (1300)
Q Consensus 1155 ~------------------------~~d~-----~i~~~l~~~----~l~~~i~~~-~~gLdt-~v~e~G~~LSgGqrQr 1199 (1300)
+ .+-. .+.++++.. .+.+..+.+ .-||+. .++.....||||||||
T Consensus 759 ~~~~~C~~C~G~R~~~e~l~v~~~g~~i~dvl~ltv~E~l~~f~~~~~i~~~l~~L~~vgL~~l~l~~~~~tLSgGEkQR 838 (943)
T PRK00349 759 DVYVPCDVCKGKRYNRETLEVKYKGKNIADVLDMTVEEALEFFEAIPKIARKLQTLVDVGLGYIKLGQPATTLSGGEAQR 838 (943)
T ss_pred CccccCccccCccccccceEEEECCCCHHHHhcCcHHHHHHHHHhchhhhHHHHHHHHCCCCcccccCCcccCCHHHHHH
Confidence 1 0111 122222221 010000000 124544 3567778999999999
Q ss_pred HHHHHHHccCC---CEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhccCEEEEE------eCCEEEE
Q 000755 1200 VCLGRVLLKKS---KVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVIDSDMVLLL------SHGIIEE 1269 (1300)
Q Consensus 1200 l~LARall~~~---~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~~D~v~vl------~~G~i~e 1269 (1300)
+.|||+|+++| +++||||||++||+.+.+.+.+.|++.. ++.|||+|+|+++.+..||+|++| ++|+|++
T Consensus 839 l~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~~aD~ii~Lgp~~G~~~G~Iv~ 918 (943)
T PRK00349 839 VKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIKTADWIIDLGPEGGDGGGEIVA 918 (943)
T ss_pred HHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEecCCcCCCCCEEEE
Confidence 99999999999 9999999999999999999999998865 478999999999999889999999 7999999
Q ss_pred ecChhhHHhcCCChHHHHHHHH
Q 000755 1270 YDSPTKLLENKSSSFAQLVAEY 1291 (1300)
Q Consensus 1270 ~g~~~~l~~~~~~~f~~l~~~~ 1291 (1300)
.|+|+++.+++.+.=.+.+..+
T Consensus 919 ~Gt~~el~~~~~s~t~~~l~~~ 940 (943)
T PRK00349 919 TGTPEEVAKVEASYTGRYLKPV 940 (943)
T ss_pred eCCHHHHHhCcccHHHHHHHHH
Confidence 9999999987766555555443
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-39 Score=362.26 Aligned_cols=221 Identities=27% Similarity=0.417 Sum_probs=188.9
Q ss_pred ceEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CcceEEECCeecCC--CCH
Q 000755 1053 GEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGEIVIDGINISS--IGL 1125 (1300)
Q Consensus 1053 g~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p-----~~G~I~idg~di~~--i~~ 1125 (1300)
+.++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++.. ...
T Consensus 6 ~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (259)
T PRK14260 6 PAIKVKDLSFYYNT--SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRINI 83 (259)
T ss_pred ceEEEEEEEEEECC--eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccch
Confidence 36999999999975 3599999999999999999999999999999999999985 48999999999854 344
Q ss_pred HHHhcccEEEcCCCCCCcccHHHhcCCCC----CCC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHH
Q 000755 1126 HDLRSRLSIIPQDPTMFEGTVRNNLDPLE----EYK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQR 1197 (1300)
Q Consensus 1126 ~~lr~~i~~vpQ~~~lf~gTvr~Nl~~~~----~~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqr 1197 (1300)
..+|.+++|+||++.+|+.|+++|+.+.. ... ++.+.++++.+++.+.+.. .....+..||+|||
T Consensus 84 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~G~~ 156 (259)
T PRK14260 84 NRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKD-------KLNKSALGLSGGQQ 156 (259)
T ss_pred HhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHHH
Confidence 56788999999999999999999986321 112 2345677888888654332 12345678999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhc-cCEEEEEe-----CCEEEEec
Q 000755 1198 QLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVID-SDMVLLLS-----HGIIEEYD 1271 (1300)
Q Consensus 1198 Qrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~-~D~v~vl~-----~G~i~e~g 1271 (1300)
||++|||||+++|++|||||||++||+.+...+.+.|++..+++|||++||+++.+.. ||++++|+ +|++++.|
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~ 236 (259)
T PRK14260 157 QRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFG 236 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeC
Confidence 9999999999999999999999999999999999999987667899999999999987 99999998 59999999
Q ss_pred ChhhHHhcCCC
Q 000755 1272 SPTKLLENKSS 1282 (1300)
Q Consensus 1272 ~~~~l~~~~~~ 1282 (1300)
+++++.+++..
T Consensus 237 ~~~~~~~~~~~ 247 (259)
T PRK14260 237 VTTQIFSNPLD 247 (259)
T ss_pred CHHHHhcCCCC
Confidence 99999865543
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-39 Score=378.36 Aligned_cols=219 Identities=23% Similarity=0.388 Sum_probs=190.6
Q ss_pred CceEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcc
Q 000755 1052 HGEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSR 1131 (1300)
Q Consensus 1052 ~g~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~ 1131 (1300)
...++++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.+||.++...+. .|++
T Consensus 17 ~~~l~l~~v~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 92 (377)
T PRK11607 17 TPLLEIRNLTKSFDG--QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRP 92 (377)
T ss_pred CceEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCC
Confidence 346999999999975 358999999999999999999999999999999999999999999999999987654 4678
Q ss_pred cEEEcCCCCCCcc-cHHHhcCCCC---CCC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHH
Q 000755 1132 LSIIPQDPTMFEG-TVRNNLDPLE---EYK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLG 1203 (1300)
Q Consensus 1132 i~~vpQ~~~lf~g-Tvr~Nl~~~~---~~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LA 1203 (1300)
++|+||++.+|+. ||++|+.+.. ..+ .+++.++++.+++.+...+.| .+||||||||++||
T Consensus 93 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----------~~LSgGq~QRVaLA 161 (377)
T PRK11607 93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKP-----------HQLSGGQRQRVALA 161 (377)
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHH
Confidence 9999999999976 9999997431 122 235667888888876554443 46899999999999
Q ss_pred HHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc--CCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHHhcC
Q 000755 1204 RVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF--SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENK 1280 (1300)
Q Consensus 1204 Rall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~~~~ 1280 (1300)
|||+++|++|+|||||++||..+.+.+.+.|++.. .+.|+|++||+++++.. ||||++|++|++++.|+|+++..++
T Consensus 162 RAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p 241 (377)
T PRK11607 162 RSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHP 241 (377)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCC
Confidence 99999999999999999999999999998887754 26899999999999877 9999999999999999999999887
Q ss_pred CChHH
Q 000755 1281 SSSFA 1285 (1300)
Q Consensus 1281 ~~~f~ 1285 (1300)
...|.
T Consensus 242 ~~~~~ 246 (377)
T PRK11607 242 TTRYS 246 (377)
T ss_pred ccHHH
Confidence 76554
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-39 Score=365.06 Aligned_cols=212 Identities=28% Similarity=0.398 Sum_probs=186.7
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccE
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLS 1133 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~ 1133 (1300)
.++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+..++|+.++
T Consensus 11 ~l~i~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 88 (265)
T PRK10575 11 TFALRNVSFRVPG--RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVA 88 (265)
T ss_pred eEEEeeEEEEECC--EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheE
Confidence 5999999999964 35999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEcCCCCCCcc-cHHHhcCCCC-----------CCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHH
Q 000755 1134 IIPQDPTMFEG-TVRNNLDPLE-----------EYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVC 1201 (1300)
Q Consensus 1134 ~vpQ~~~lf~g-Tvr~Nl~~~~-----------~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~ 1201 (1300)
|+||++.++.+ |+++|+.... ...++++.++++.+++.+.....+ .+||||||||++
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~ 157 (265)
T PRK10575 89 YLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----------DSLSGGERQRAW 157 (265)
T ss_pred EeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----------ccCCHHHHHHHH
Confidence 99999877665 9999986321 012345778899988865444332 468999999999
Q ss_pred HHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc--CCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHHh
Q 000755 1202 LGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF--SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLE 1278 (1300)
Q Consensus 1202 LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~~ 1278 (1300)
|||||+.+|++|||||||++||+.+.+.+.+.|++.. .++|||++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 158 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (265)
T PRK10575 158 IAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237 (265)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhcC
Confidence 9999999999999999999999999999999998864 27899999999999976 99999999999999999998864
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-39 Score=360.18 Aligned_cols=215 Identities=26% Similarity=0.397 Sum_probs=184.0
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCC--------H
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIG--------L 1125 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~--------~ 1125 (1300)
.++++|++++|++. ++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+ .
T Consensus 3 ~l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 3 AIEVKNLVKKFHGQ--TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred cEEEeceEEEECCe--eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence 48999999999753 5999999999999999999999999999999999999999999999999986532 2
Q ss_pred HHHhcccEEEcCCCCCCc-ccHHHhcCCC----CCCC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhH
Q 000755 1126 HDLRSRLSIIPQDPTMFE-GTVRNNLDPL----EEYK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQ 1196 (1300)
Q Consensus 1126 ~~lr~~i~~vpQ~~~lf~-gTvr~Nl~~~----~~~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGq 1196 (1300)
..+|++++|+||++.+|. .|+++|+... .... .+.+.++++.+++.+.. .....+|||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~Gq 149 (250)
T PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKE-----------TSYPRRLSGGQ 149 (250)
T ss_pred HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchh-----------hCChhhCChHH
Confidence 456788999999998886 5999998531 1122 23356667777765432 23457899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC-CcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChh
Q 000755 1197 RQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS-DCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPT 1274 (1300)
Q Consensus 1197 rQrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~-~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~ 1274 (1300)
|||++|||||+.+|++|||||||++||+.+.+.+.+.|++..+ ++|||++||+++.+.. ||+|++|++|++++.|+++
T Consensus 150 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 229 (250)
T PRK11264 150 QQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAK 229 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999988653 7899999999999987 9999999999999999999
Q ss_pred hHHhcCC
Q 000755 1275 KLLENKS 1281 (1300)
Q Consensus 1275 ~l~~~~~ 1281 (1300)
++.+.+.
T Consensus 230 ~~~~~~~ 236 (250)
T PRK11264 230 ALFADPQ 236 (250)
T ss_pred HHhcCCC
Confidence 9876543
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-39 Score=363.22 Aligned_cols=224 Identities=26% Similarity=0.362 Sum_probs=186.1
Q ss_pred eEEEEeeeeeeCCC-------CCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHH
Q 000755 1054 EVDILNLQVRYAPH-------LPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLH 1126 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~-------~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~ 1126 (1300)
.|+++||+++|++. ...+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 37899999999631 34699999999999999999999999999999999999999999999999999877654
Q ss_pred H---HhcccEEEcCCCC--CCc-ccHHHhcCC----CCCC----CHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCC
Q 000755 1127 D---LRSRLSIIPQDPT--MFE-GTVRNNLDP----LEEY----KDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENW 1192 (1300)
Q Consensus 1127 ~---lr~~i~~vpQ~~~--lf~-gTvr~Nl~~----~~~~----~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~L 1192 (1300)
+ +|++++|+||++. ++. .|+++|+.. .... .++++.++++.+++.+.. ....+.+|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~~~~L 151 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSED----------ADKLPRQL 151 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhh----------hhCChhhC
Confidence 3 5778999999983 443 599999842 1111 234566778888774221 22345679
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhc-cCEEEEEeCCEEEE
Q 000755 1193 SMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGIIEE 1269 (1300)
Q Consensus 1193 SgGqrQrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e 1269 (1300)
|||||||++|||||+.+|++|||||||++||+.+...+.+.|++..+ +.|||++||+++.+.. ||++++|++|++++
T Consensus 152 SgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 231 (265)
T TIGR02769 152 SGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE 231 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999998653 7899999999999986 99999999999999
Q ss_pred ecChhhHHhcCCChHHHH
Q 000755 1270 YDSPTKLLENKSSSFAQL 1287 (1300)
Q Consensus 1270 ~g~~~~l~~~~~~~f~~l 1287 (1300)
.|+++++...++...+.+
T Consensus 232 ~g~~~~~~~~~~~~~~~~ 249 (265)
T TIGR02769 232 ECDVAQLLSFKHPAGRNL 249 (265)
T ss_pred ECCHHHHcCCCCHHHHHH
Confidence 999999986433333333
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-39 Score=379.33 Aligned_cols=204 Identities=26% Similarity=0.430 Sum_probs=178.5
Q ss_pred cceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHH----hcccEEEcCCCCCCcc-
Q 000755 1070 LVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDL----RSRLSIIPQDPTMFEG- 1144 (1300)
Q Consensus 1070 ~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~l----r~~i~~vpQ~~~lf~g- 1144 (1300)
.+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++...+...+ |++++|+||++.+|..
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 37999999999999999999999999999999999999999999999999988876554 3579999999999875
Q ss_pred cHHHhcCCCC---CCC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEeC
Q 000755 1145 TVRNNLDPLE---EYK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDE 1217 (1300)
Q Consensus 1145 Tvr~Nl~~~~---~~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~~iLlLDE 1217 (1300)
|+++|+.+.. ... ++++.++++.+++.++..+.| .+||||||||++|||||+.+|++|||||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~-----------~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP-----------DELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc-----------ccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 9999996421 122 345677899998876655444 4789999999999999999999999999
Q ss_pred CCcCCCHHHHHHHHHHHHHhc--CCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHHhcCCChH
Q 000755 1218 ATASVDTATDNLIQQTLRQHF--SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENKSSSF 1284 (1300)
Q Consensus 1218 pTs~lD~~t~~~i~~~l~~~~--~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~~~~~~~f 1284 (1300)
||++||+.+.+.+++.|++.. .++|||++||+++.+.. ||+|++|++|++++.|+++++++++...|
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~~~~~ 260 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDY 260 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCcccHH
Confidence 999999999999999998864 37899999999999877 99999999999999999999987665444
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=356.52 Aligned_cols=203 Identities=26% Similarity=0.328 Sum_probs=175.1
Q ss_pred EEEEeeeeeeCCCC--CcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhccc
Q 000755 1055 VDILNLQVRYAPHL--PLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRL 1132 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~--~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i 1132 (1300)
|+++|++++|++.. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .++++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 47899999997521 369999999999999999999999999999999999999999999999998863 46789
Q ss_pred EEEcCCCCCCc-ccHHHhcCCCC---CC----CHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHH
Q 000755 1133 SIIPQDPTMFE-GTVRNNLDPLE---EY----KDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGR 1204 (1300)
Q Consensus 1133 ~~vpQ~~~lf~-gTvr~Nl~~~~---~~----~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LAR 1204 (1300)
+|+||++.+|. .|+++|+.... .. .++++.++++.+++.+...+.+ .+||||||||++|||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrl~la~ 144 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYP-----------HQLSGGMRQRVALAR 144 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHHH
Confidence 99999999887 59999986321 11 2345777888888866544433 568999999999999
Q ss_pred HHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc--CCcEEEEEeCChhhhhc-cCEEEEEe--CCEEEEecCh
Q 000755 1205 VLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF--SDCTVITIAHRITSVID-SDMVLLLS--HGIIEEYDSP 1273 (1300)
Q Consensus 1205 all~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~iaHrl~~i~~-~D~v~vl~--~G~i~e~g~~ 1273 (1300)
||+++|++|||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+.. ||+|++|+ +|++++.++.
T Consensus 145 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999999999999998864 36899999999998876 99999999 7999988764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=341.74 Aligned_cols=216 Identities=25% Similarity=0.413 Sum_probs=187.6
Q ss_pred ceEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHH-hcc
Q 000755 1053 GEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDL-RSR 1131 (1300)
Q Consensus 1053 g~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~l-r~~ 1131 (1300)
+.+..+|+.++|... +|++||||++++||+||+.|||||||||.+.++.|+++|++|+|.+||.||+.++.+.. |..
T Consensus 3 ~~L~a~~l~K~y~kr--~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlG 80 (243)
T COG1137 3 STLVAENLAKSYKKR--KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLG 80 (243)
T ss_pred cEEEehhhhHhhCCe--eeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcC
Confidence 468899999999764 69999999999999999999999999999999999999999999999999999998874 557
Q ss_pred cEEEcCCCCCCcc-cHHHhcCCCCCC---------CHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHH
Q 000755 1132 LSIIPQDPTMFEG-TVRNNLDPLEEY---------KDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVC 1201 (1300)
Q Consensus 1132 i~~vpQ~~~lf~g-Tvr~Nl~~~~~~---------~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~ 1201 (1300)
|||+||||.+|.+ ||++|+...-+. ..+++.+.|+..++... -...+..||||||+|+-
T Consensus 81 igYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hl-----------r~~~a~sLSGGERRR~E 149 (243)
T COG1137 81 IGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHL-----------RDSKAYSLSGGERRRVE 149 (243)
T ss_pred cccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHH-----------hcCcccccccchHHHHH
Confidence 9999999999987 999998632211 11234456666665433 22346789999999999
Q ss_pred HHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHHhc
Q 000755 1202 LGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLEN 1279 (1300)
Q Consensus 1202 LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~~~ 1279 (1300)
|||||..+|+.++||||+||+||-+-..|++.|+... ++-.|++.-|+..+..+ |||.+++.+|+|...|+|+++.++
T Consensus 150 IARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n 229 (243)
T COG1137 150 IARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN 229 (243)
T ss_pred HHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcC
Confidence 9999999999999999999999999999999999875 47789999999877766 999999999999999999999987
Q ss_pred CC
Q 000755 1280 KS 1281 (1300)
Q Consensus 1280 ~~ 1281 (1300)
+.
T Consensus 230 ~~ 231 (243)
T COG1137 230 ED 231 (243)
T ss_pred hh
Confidence 53
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-39 Score=370.54 Aligned_cols=211 Identities=23% Similarity=0.348 Sum_probs=186.3
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEE
Q 000755 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSI 1134 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~ 1134 (1300)
++++|++++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|++++|
T Consensus 3 l~~~~l~~~~~~--~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig~ 79 (301)
T TIGR03522 3 IRVSSLTKLYGT--QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIGY 79 (301)
T ss_pred EEEEEEEEEECC--EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceEE
Confidence 789999999974 359999999999999999999999999999999999999999999999999876 34577889999
Q ss_pred EcCCCCCCcc-cHHHhcCCCC---CCC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHH
Q 000755 1135 IPQDPTMFEG-TVRNNLDPLE---EYK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVL 1206 (1300)
Q Consensus 1135 vpQ~~~lf~g-Tvr~Nl~~~~---~~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARal 1206 (1300)
+||++.+|++ |+++|+.+.. ... .+++.++++.+++.+... ....+||+|||||++|||||
T Consensus 80 ~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~qrv~la~al 148 (301)
T TIGR03522 80 LPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQH-----------KKIGQLSKGYRQRVGLAQAL 148 (301)
T ss_pred ecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhc-----------CchhhCCHHHHHHHHHHHHH
Confidence 9999999876 9999986321 122 345667788887765433 23467999999999999999
Q ss_pred ccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHHhc
Q 000755 1207 LKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLEN 1279 (1300)
Q Consensus 1207 l~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~~~ 1279 (1300)
+++|++|+|||||+|||+.+.+.+.+.|++..+++|||++||+++.+.. ||||++|++|++++.|+++++..+
T Consensus 149 ~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 149 IHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999999988778999999999999988 999999999999999999998653
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=354.60 Aligned_cols=202 Identities=24% Similarity=0.397 Sum_probs=174.4
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEE
Q 000755 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSI 1134 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~ 1134 (1300)
|+++|++++|+.. ++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+.. +++++|
T Consensus 1 i~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~~ 76 (213)
T cd03301 1 VELENVTKRFGNV--TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIAM 76 (213)
T ss_pred CEEEeeEEEECCe--eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEEE
Confidence 4789999999753 599999999999999999999999999999999999999999999999998765432 467999
Q ss_pred EcCCCCCCc-ccHHHhcCCC---CCCC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHH
Q 000755 1135 IPQDPTMFE-GTVRNNLDPL---EEYK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVL 1206 (1300)
Q Consensus 1135 vpQ~~~lf~-gTvr~Nl~~~---~~~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARal 1206 (1300)
+||++.+|. .|+++|+... .... ++++.++++.+++.+..... ..+||||||||++||||+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qr~~laral 145 (213)
T cd03301 77 VFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRK-----------PKQLSGGQRQRVALGRAI 145 (213)
T ss_pred EecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCC-----------hhhCCHHHHHHHHHHHHH
Confidence 999999885 5999998642 1122 23456678888876554433 357899999999999999
Q ss_pred ccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc--CCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEec
Q 000755 1207 LKKSKVLVLDEATASVDTATDNLIQQTLRQHF--SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYD 1271 (1300)
Q Consensus 1207 l~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g 1271 (1300)
+++|++++|||||++||+.+.+.+.+.|++.. .++|||++||+++.+.. ||+|++|++|+++++|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 146 VREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999999999864 37899999999999887 9999999999999876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=361.62 Aligned_cols=220 Identities=24% Similarity=0.461 Sum_probs=188.7
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCC-----CCcceEEECCeecCC--CCHH
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVE-----PTAGEIVIDGINISS--IGLH 1126 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~-----p~~G~I~idg~di~~--i~~~ 1126 (1300)
.|+++||+++|++. ++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++.. .+..
T Consensus 10 ~l~i~~v~~~~~~~--~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 87 (264)
T PRK14243 10 VLRTENLNVYYGSF--LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87 (264)
T ss_pred EEEEeeeEEEECCE--EEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence 59999999999753 59999999999999999999999999999999999986 489999999998853 3456
Q ss_pred HHhcccEEEcCCCCCCcccHHHhcCCCC---CC---CHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHH
Q 000755 1127 DLRSRLSIIPQDPTMFEGTVRNNLDPLE---EY---KDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLV 1200 (1300)
Q Consensus 1127 ~lr~~i~~vpQ~~~lf~gTvr~Nl~~~~---~~---~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl 1200 (1300)
.+|++++|+||++.+|+.|+++|+.+.. .. .++++.++++.+++.+.+.. .....+.+||||||||+
T Consensus 88 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~qrv 160 (264)
T PRK14243 88 EVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-------KLKQSGLSLSGGQQQRL 160 (264)
T ss_pred HHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHH-------HhcCCcccCCHHHHHHH
Confidence 6788999999999999889999986421 11 12345667788887654432 23445678999999999
Q ss_pred HHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhc-cCEEEEEe---------CCEEEEe
Q 000755 1201 CLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVID-SDMVLLLS---------HGIIEEY 1270 (1300)
Q Consensus 1201 ~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~-~D~v~vl~---------~G~i~e~ 1270 (1300)
+|||||+++|++|||||||++||+.+.+.+.+.|++..+++|||++||+++.+.. ||||++|+ +|++++.
T Consensus 161 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~ 240 (264)
T PRK14243 161 CIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEF 240 (264)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEe
Confidence 9999999999999999999999999999999999987667899999999999987 99999998 8999999
Q ss_pred cChhhHHhcCCC
Q 000755 1271 DSPTKLLENKSS 1282 (1300)
Q Consensus 1271 g~~~~l~~~~~~ 1282 (1300)
|+++++.+++..
T Consensus 241 ~~~~~~~~~~~~ 252 (264)
T PRK14243 241 DRTEKIFNSPQQ 252 (264)
T ss_pred CCHHHHHhCCCc
Confidence 999999876543
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=364.05 Aligned_cols=221 Identities=25% Similarity=0.459 Sum_probs=188.9
Q ss_pred CceEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCC-----CCcceEEECCeecCC--CC
Q 000755 1052 HGEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVE-----PTAGEIVIDGINISS--IG 1124 (1300)
Q Consensus 1052 ~g~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~-----p~~G~I~idg~di~~--i~ 1124 (1300)
...|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 37 ~~~l~i~~l~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 37 ETVIEARDLNVFYGD--EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred CceEEEEEEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 446999999999975 359999999999999999999999999999999999997 689999999999864 34
Q ss_pred HHHHhcccEEEcCCCCCCcccHHHhcCCCC---C---CCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHH
Q 000755 1125 LHDLRSRLSIIPQDPTMFEGTVRNNLDPLE---E---YKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQ 1198 (1300)
Q Consensus 1125 ~~~lr~~i~~vpQ~~~lf~gTvr~Nl~~~~---~---~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQ 1198 (1300)
...+|++++|+||++.+|..|+++|+.... . ..+++++++++.+++...+.. .....+.+|||||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LSgGe~q 187 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKD-------QLDSSGLDLSGGQQQ 187 (285)
T ss_pred hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHH-------HHhCCcccCCHHHHH
Confidence 556788999999999999889999986321 1 124467788888887543322 123455789999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhc-cCEEE-EEeCCEEEEecChhhH
Q 000755 1199 LVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVID-SDMVL-LLSHGIIEEYDSPTKL 1276 (1300)
Q Consensus 1199 rl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~-~D~v~-vl~~G~i~e~g~~~~l 1276 (1300)
|++|||||+++|+||||||||++||+.+.+.+.+.|++..+++|||++||+++.+.. |||++ +|++|+|++.|+++++
T Consensus 188 rv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 188 RLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999988767899999999999987 99975 5799999999999998
Q ss_pred HhcCC
Q 000755 1277 LENKS 1281 (1300)
Q Consensus 1277 ~~~~~ 1281 (1300)
.+++.
T Consensus 268 ~~~~~ 272 (285)
T PRK14254 268 FENPE 272 (285)
T ss_pred HhCcC
Confidence 86543
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=354.48 Aligned_cols=200 Identities=30% Similarity=0.448 Sum_probs=172.5
Q ss_pred EEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEEE
Q 000755 1056 DILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSII 1135 (1300)
Q Consensus 1056 ~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~v 1135 (1300)
+++|++++|++...++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++...+...+|++++|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 36899999975324599999999999999999999999999999999999999999999999999877777888899999
Q ss_pred cCCCC--CCcccHHHhcCCCC---CCC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHH
Q 000755 1136 PQDPT--MFEGTVRNNLDPLE---EYK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVL 1206 (1300)
Q Consensus 1136 pQ~~~--lf~gTvr~Nl~~~~---~~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARal 1206 (1300)
||++. ++..|+++|+.... ... ++++.++++..++.+...+ ....||||||||++|||||
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~laral 149 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDR-----------SPFTLSGGQKQRVAIAGVL 149 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcC-----------CcccCCHHHHHHHHHHHHH
Confidence 99984 56789999986421 122 2345667787777554333 3467999999999999999
Q ss_pred ccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC-CcEEEEEeCChhhhhc-cCEEEEEeCCE
Q 000755 1207 LKKSKVLVLDEATASVDTATDNLIQQTLRQHFS-DCTVITIAHRITSVID-SDMVLLLSHGI 1266 (1300)
Q Consensus 1207 l~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~-~~Tvi~iaHrl~~i~~-~D~v~vl~~G~ 1266 (1300)
+++|++|||||||++||+.+.+.+.+.|++..+ ++|||++||+++.+.. ||+|++|++|+
T Consensus 150 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 150 AMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999988653 7899999999999988 99999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-39 Score=362.22 Aligned_cols=223 Identities=23% Similarity=0.394 Sum_probs=191.6
Q ss_pred CCCceEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CcceEEECCeecC---
Q 000755 1050 PTHGEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGEIVIDGINIS--- 1121 (1300)
Q Consensus 1050 p~~g~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p-----~~G~I~idg~di~--- 1121 (1300)
|..+.|+++|++++|+.. ++|+|+||+|++||++||+|+||||||||+++|+|+.+| ++|+|.+||.++.
T Consensus 12 ~~~~~l~~~~l~~~~~~~--~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~ 89 (265)
T PRK14252 12 PTQQKSEVNKLNFYYGGY--QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILS 89 (265)
T ss_pred CCCceEEEEEEEEEECCe--eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccc
Confidence 567889999999999753 599999999999999999999999999999999999985 7999999998774
Q ss_pred -CCCHHHHhcccEEEcCCCCCCcccHHHhcCCCC---C-----CCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCC
Q 000755 1122 -SIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLE---E-----YKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENW 1192 (1300)
Q Consensus 1122 -~i~~~~lr~~i~~vpQ~~~lf~gTvr~Nl~~~~---~-----~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~L 1192 (1300)
......+|++++|+||++.+|.+|+++|+.... . ..++++.++++.+++.+.+. ........+|
T Consensus 90 ~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~L 162 (265)
T PRK14252 90 PEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVK-------DRLGDLAFNL 162 (265)
T ss_pred cccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhh-------HHHhCCcccC
Confidence 233456788999999999999899999996421 1 12356777888887754332 2334456789
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEec
Q 000755 1193 SMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYD 1271 (1300)
Q Consensus 1193 SgGqrQrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g 1271 (1300)
|+|||||++|||||+++|+++||||||++||+.+.+.+.+.|++..+++|||+|||+++.+.. ||||++|++|++++.|
T Consensus 163 S~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g 242 (265)
T PRK14252 163 SGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFG 242 (265)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999987667899999999999986 9999999999999999
Q ss_pred ChhhHHhcCC
Q 000755 1272 SPTKLLENKS 1281 (1300)
Q Consensus 1272 ~~~~l~~~~~ 1281 (1300)
+++++..++.
T Consensus 243 ~~~~~~~~~~ 252 (265)
T PRK14252 243 ATDTIFIKPK 252 (265)
T ss_pred CHHHHHhCCC
Confidence 9999976543
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-39 Score=358.68 Aligned_cols=213 Identities=22% Similarity=0.325 Sum_probs=181.6
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCC------CCHHH
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISS------IGLHD 1127 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~------i~~~~ 1127 (1300)
.++++|++++|++ +++|+|+||++++||++||+|+||||||||+++|+|+++|++|+|.+||.++.. .....
T Consensus 2 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 2 SIQLNGINCFYGA--HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEEeeEEEECC--eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence 3789999999975 359999999999999999999999999999999999999999999999998731 22346
Q ss_pred HhcccEEEcCCCCCCcc-cHHHhcCCC----CCCC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHH
Q 000755 1128 LRSRLSIIPQDPTMFEG-TVRNNLDPL----EEYK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQ 1198 (1300)
Q Consensus 1128 lr~~i~~vpQ~~~lf~g-Tvr~Nl~~~----~~~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQ 1198 (1300)
.|++++|+||++.+|.+ |+++|+... .... .+++.++++.+++.+...+ ...+|||||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~q 148 (242)
T PRK11124 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADR-----------FPLHLSGGQQQ 148 (242)
T ss_pred HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhC-----------ChhhCCHHHHH
Confidence 68899999999999875 999998521 1112 2345666777776554433 33578999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhH
Q 000755 1199 LVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKL 1276 (1300)
Q Consensus 1199 rl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l 1276 (1300)
|++||||++++|++|||||||++||+.+...+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 149 rv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 149 RVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 9999999999999999999999999999999999999865 37899999999999976 999999999999999999887
Q ss_pred Hhc
Q 000755 1277 LEN 1279 (1300)
Q Consensus 1277 ~~~ 1279 (1300)
.+.
T Consensus 229 ~~~ 231 (242)
T PRK11124 229 TQP 231 (242)
T ss_pred cCc
Confidence 643
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-39 Score=365.32 Aligned_cols=215 Identities=24% Similarity=0.377 Sum_probs=188.0
Q ss_pred eEEEEeeeeeeCCC-CCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhccc
Q 000755 1054 EVDILNLQVRYAPH-LPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRL 1132 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~-~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i 1132 (1300)
.|+++|++++|++. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 58999999999743 24599999999999999999999999999999999999999999999999999877777888999
Q ss_pred EEEcCCCC--CCcccHHHhcCCC---CCCCHH----HHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHH
Q 000755 1133 SIIPQDPT--MFEGTVRNNLDPL---EEYKDE----EIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLG 1203 (1300)
Q Consensus 1133 ~~vpQ~~~--lf~gTvr~Nl~~~---~~~~d~----~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LA 1203 (1300)
+|+||+|. ++..|+.+|+.+. ...+++ .+.++++.+++.++... ....||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTR-----------EPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhC-----------CcccCCHHHHHHHHHH
Confidence 99999983 6678999999642 122332 35677888888665443 2357899999999999
Q ss_pred HHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhccCEEEEEeCCEEEEecChhhHHhc
Q 000755 1204 RVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLEN 1279 (1300)
Q Consensus 1204 Rall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~~D~v~vl~~G~i~e~g~~~~l~~~ 1279 (1300)
|||+++|++|||||||++||+.+...+.+.|++..+ ++|||++||+++.+..||+|++|++|++++.|++++++.+
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999988653 7899999999999988999999999999999999998753
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-39 Score=354.94 Aligned_cols=200 Identities=24% Similarity=0.352 Sum_probs=174.1
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHH---HHhcc
Q 000755 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLH---DLRSR 1131 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~---~lr~~ 1131 (1300)
++++|++++|+.+ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++..++.. .+++.
T Consensus 2 l~~~~l~~~~~~~-~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 2 IEFHNVSKAYPGG-VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred EEEEeeeEEeCCC-ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 7899999999532 3699999999999999999999999999999999999999999999999999876543 46788
Q ss_pred cEEEcCCCCCCc-ccHHHhcCCC---CCC----CHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHH
Q 000755 1132 LSIIPQDPTMFE-GTVRNNLDPL---EEY----KDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLG 1203 (1300)
Q Consensus 1132 i~~vpQ~~~lf~-gTvr~Nl~~~---~~~----~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LA 1203 (1300)
++|+||++.+|. .|+++|+... ... .+++++++++.+++.+...+.+ .+||||||||++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~la 149 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP-----------EQLSGGEQQRVAIA 149 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHHH
Confidence 999999999886 5999998642 111 2346788899988866544433 47899999999999
Q ss_pred HHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhc-cCEEEEEeCCE
Q 000755 1204 RVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGI 1266 (1300)
Q Consensus 1204 Rall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~ 1266 (1300)
|||+++|++|||||||++||+.+...+.+.|++.. +++|||++||+++.+.. ||+|++|++|+
T Consensus 150 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 150 RAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999999999999999864 47899999999999987 99999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-39 Score=362.10 Aligned_cols=212 Identities=26% Similarity=0.422 Sum_probs=186.2
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccE
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLS 1133 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~ 1133 (1300)
.++++|++++|++ .++|+|+||++++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+..++++.++
T Consensus 2 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 2 TLRTENLTVGYGT--KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEEeEEEEECC--EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 3789999999975 35999999999999999999999999999999999999999999999999998777778888899
Q ss_pred EEcCCCCCCcc-cHHHhcCCCC--------C---CCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHH
Q 000755 1134 IIPQDPTMFEG-TVRNNLDPLE--------E---YKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVC 1201 (1300)
Q Consensus 1134 ~vpQ~~~lf~g-Tvr~Nl~~~~--------~---~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~ 1201 (1300)
|+||++.++.+ |+++|+.+.. . ..++++.++++.+++.+.... ....||||||||++
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~ 148 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADR-----------RLTDLSGGQRQRAF 148 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcC-----------CcccCCHHHHHHHH
Confidence 99999998876 9999986421 0 113356777888887654333 34678999999999
Q ss_pred HHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHHh
Q 000755 1202 LGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLE 1278 (1300)
Q Consensus 1202 LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~~ 1278 (1300)
||||++++|++|||||||++||+.+.+.+.+.|++.. +++|||++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 9999999999999999999999999999999998864 37899999999999987 99999999999999999998864
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-39 Score=364.50 Aligned_cols=215 Identities=26% Similarity=0.430 Sum_probs=186.9
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccE
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLS 1133 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~ 1133 (1300)
.++++|++++|++..+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+...+|++++
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 86 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIG 86 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhee
Confidence 59999999999754345999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEcCCCC-CC-cccHHHhcCCCC---CCC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHH
Q 000755 1134 IIPQDPT-MF-EGTVRNNLDPLE---EYK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGR 1204 (1300)
Q Consensus 1134 ~vpQ~~~-lf-~gTvr~Nl~~~~---~~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LAR 1204 (1300)
|+||+|. +| ..|+++|+.+.. ... ++++.++++.+++.+... ....+||+|||||++|||
T Consensus 87 ~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~lar 155 (269)
T PRK13648 87 IVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERAD-----------YEPNALSGGQKQRVAIAG 155 (269)
T ss_pred EEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhh-----------CCcccCCHHHHHHHHHHH
Confidence 9999984 44 458999985421 112 235667788887765433 234679999999999999
Q ss_pred HHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhccCEEEEEeCCEEEEecChhhHHhc
Q 000755 1205 VLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLEN 1279 (1300)
Q Consensus 1205 all~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~~D~v~vl~~G~i~e~g~~~~l~~~ 1279 (1300)
|++.+|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+..||||++|++|++++.|+++++.++
T Consensus 156 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 156 VLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999999998643 6899999999999988999999999999999999998754
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-39 Score=350.59 Aligned_cols=199 Identities=34% Similarity=0.531 Sum_probs=172.3
Q ss_pred eEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC----------eEEEE
Q 000755 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG----------TKAYV 685 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g----------~~ayv 685 (1300)
.|+++|++|+|+. . ++|+||||+|++|++++|+||||||||||+|+|+|+++|.+|+|.+.| .||||
T Consensus 4 ~i~v~nl~v~y~~--~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYV 80 (254)
T COG1121 4 MIEVENLTVSYGN--R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYV 80 (254)
T ss_pred EEEEeeeEEEECC--E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEc
Confidence 5899999999973 2 699999999999999999999999999999999999999999999876 48999
Q ss_pred ecCC---cCCCCCHHHHHhcCCCC-----------CHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHH
Q 000755 686 AQSP---WIQSGNIEDNILFGKPM-----------DREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQ 751 (1300)
Q Consensus 686 ~Q~~---~l~~~Ti~eNI~fg~~~-----------~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRia 751 (1300)
||.. |-|..||+|-+.+|... |.++.+++++..++.+.. ......|||||+||+-
T Consensus 81 PQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~-----------~r~i~~LSGGQ~QRV~ 149 (254)
T COG1121 81 PQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLR-----------DRQIGELSGGQKQRVL 149 (254)
T ss_pred CcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhh-----------CCcccccCcHHHHHHH
Confidence 9965 66889999999998532 347888888888887432 2344579999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHHHh
Q 000755 752 IARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-RSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDILN 829 (1300)
Q Consensus 752 LARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l-~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 829 (1300)
|||||.++||+|+|||||+++|+.++..+++ ++..+. +|+||++|||+++.+.. +|+|+.| |+++...|++++...
T Consensus 150 lARAL~~~p~lllLDEP~~gvD~~~~~~i~~-lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~L-n~~~~~~G~~~~~~~ 227 (254)
T COG1121 150 LARALAQNPDLLLLDEPFTGVDVAGQKEIYD-LLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPEEVLT 227 (254)
T ss_pred HHHHhccCCCEEEecCCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEE-cCeeEeccChhhccC
Confidence 9999999999999999999999999998875 555443 48999999999998765 9999999 567888999998875
Q ss_pred c
Q 000755 830 S 830 (1300)
Q Consensus 830 ~ 830 (1300)
.
T Consensus 228 ~ 228 (254)
T COG1121 228 E 228 (254)
T ss_pred H
Confidence 3
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-39 Score=363.44 Aligned_cols=214 Identities=23% Similarity=0.362 Sum_probs=187.9
Q ss_pred CceEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcc
Q 000755 1052 HGEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSR 1131 (1300)
Q Consensus 1052 ~g~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~ 1131 (1300)
.-.|+++|++++|++ ..+|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++...+...++++
T Consensus 5 ~~~l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (265)
T PRK10253 5 VARLRGEQLTLGYGK--YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARR 82 (265)
T ss_pred ccEEEEEEEEEEECC--EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 346999999999975 359999999999999999999999999999999999999999999999999988888888889
Q ss_pred cEEEcCCCCCCc-ccHHHhcCCCC--C------C---CHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHH
Q 000755 1132 LSIIPQDPTMFE-GTVRNNLDPLE--E------Y---KDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQL 1199 (1300)
Q Consensus 1132 i~~vpQ~~~lf~-gTvr~Nl~~~~--~------~---~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQr 1199 (1300)
++|+||++.+|. .|+++|+.+.. . . .++.++++++.+++.+...+ ....||||||||
T Consensus 83 i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~Gq~qr 151 (265)
T PRK10253 83 IGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQ-----------SVDTLSGGQRQR 151 (265)
T ss_pred eEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcC-----------CcccCChHHHHH
Confidence 999999998875 59999986421 0 1 12356778888887654332 346799999999
Q ss_pred HHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhH
Q 000755 1200 VCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKL 1276 (1300)
Q Consensus 1200 l~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l 1276 (1300)
++||||++++|++|||||||++||+.+.+.+.+.|++..+ ++|||++||+++.+.+ ||+|++|++|++++.|+++++
T Consensus 152 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (265)
T PRK10253 152 AWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEI 231 (265)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999988643 6899999999999887 999999999999999999998
Q ss_pred Hh
Q 000755 1277 LE 1278 (1300)
Q Consensus 1277 ~~ 1278 (1300)
..
T Consensus 232 ~~ 233 (265)
T PRK10253 232 VT 233 (265)
T ss_pred hh
Confidence 75
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=370.25 Aligned_cols=226 Identities=19% Similarity=0.306 Sum_probs=187.5
Q ss_pred eEEEEeeeeeeCCCC--CcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCC----CCcceEEECCeecCCCCHHH
Q 000755 1054 EVDILNLQVRYAPHL--PLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVE----PTAGEIVIDGINISSIGLHD 1127 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~--~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~----p~~G~I~idg~di~~i~~~~ 1127 (1300)
.++++|+++.|+... ..+|+||||+|++||++||||+||||||||+++|+|+++ |++|+|.+||.|+..++.++
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 489999999997532 359999999999999999999999999999999999998 48999999999999888766
Q ss_pred Hhc----ccEEEcCCCC--CCcc-cHHHhc----CCCCCCC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCC
Q 000755 1128 LRS----RLSIIPQDPT--MFEG-TVRNNL----DPLEEYK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENW 1192 (1300)
Q Consensus 1128 lr~----~i~~vpQ~~~--lf~g-Tvr~Nl----~~~~~~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~L 1192 (1300)
+++ +++||||+|. +.+. |+.+++ ....... .+++.++|+++++.+.... ....+.+|
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~--------l~~~p~~L 154 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASR--------LDVYPHQL 154 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHH--------HhCCchhC
Confidence 543 6999999994 4432 666554 2221112 3457788999988643211 22345689
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhc-cCEEEEEeCCEEEE
Q 000755 1193 SMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGIIEE 1269 (1300)
Q Consensus 1193 SgGqrQrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e 1269 (1300)
|||||||++|||||+.+|++||+||||++||+.+...+.+.|++..+ +.|+|+|||+++.+.. ||||+||++|+|+|
T Consensus 155 SgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive 234 (326)
T PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVE 234 (326)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998653 7899999999999976 99999999999999
Q ss_pred ecChhhHHhcCCChHHHH
Q 000755 1270 YDSPTKLLENKSSSFAQL 1287 (1300)
Q Consensus 1270 ~g~~~~l~~~~~~~f~~l 1287 (1300)
.|+++++++++...|.+.
T Consensus 235 ~g~~~~~~~~p~hpyt~~ 252 (326)
T PRK11022 235 TGKAHDIFRAPRHPYTQA 252 (326)
T ss_pred ECCHHHHhhCCCChHHHH
Confidence 999999998766555543
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-39 Score=353.47 Aligned_cols=201 Identities=24% Similarity=0.369 Sum_probs=173.7
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCH---HHHhcc
Q 000755 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGL---HDLRSR 1131 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~---~~lr~~ 1131 (1300)
++++|++++|+.+ +++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++...+. ...|+.
T Consensus 1 l~~~~l~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 79 (214)
T cd03292 1 IEFINVTKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK 79 (214)
T ss_pred CEEEEEEEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence 4789999999643 459999999999999999999999999999999999999999999999999977654 346788
Q ss_pred cEEEcCCCCCCcc-cHHHhcCCCC---CCC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHH
Q 000755 1132 LSIIPQDPTMFEG-TVRNNLDPLE---EYK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLG 1203 (1300)
Q Consensus 1132 i~~vpQ~~~lf~g-Tvr~Nl~~~~---~~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LA 1203 (1300)
++|+||++.+|.. |+++|+.... ..+ ++++.++++.+++.+...+. ..+||||||||++||
T Consensus 80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~la 148 (214)
T cd03292 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRAL-----------PAELSGGEQQRVAIA 148 (214)
T ss_pred eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-----------hhhcCHHHHHHHHHH
Confidence 9999999998875 9999986421 112 34567788888876544333 357899999999999
Q ss_pred HHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhc-cCEEEEEeCCEE
Q 000755 1204 RVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGII 1267 (1300)
Q Consensus 1204 Rall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i 1267 (1300)
|||+++|+++||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.+ ||+|++|++|++
T Consensus 149 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 149 RAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999864 47899999999999987 999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-39 Score=365.05 Aligned_cols=215 Identities=23% Similarity=0.393 Sum_probs=187.3
Q ss_pred eEEEEeeeeeeCCC----CCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCC-HHHH
Q 000755 1054 EVDILNLQVRYAPH----LPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIG-LHDL 1128 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~----~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~-~~~l 1128 (1300)
.++++|++++|+.. .+++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 58999999999742 246999999999999999999999999999999999999999999999999987643 3567
Q ss_pred hcccEEEcCCCC--CCcccHHHhcCCCC---CCC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHH
Q 000755 1129 RSRLSIIPQDPT--MFEGTVRNNLDPLE---EYK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQL 1199 (1300)
Q Consensus 1129 r~~i~~vpQ~~~--lf~gTvr~Nl~~~~---~~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQr 1199 (1300)
|++++|+||+|. +|..|+.+|+.+.. ... ++++.++++.+++.+...+.+ ..||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP-----------HLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHH
Confidence 889999999984 66669999986431 112 345778888888876655443 5789999999
Q ss_pred HHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc--CCcEEEEEeCChhhhhccCEEEEEeCCEEEEecChhhHH
Q 000755 1200 VCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF--SDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLL 1277 (1300)
Q Consensus 1200 l~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~iaHrl~~i~~~D~v~vl~~G~i~e~g~~~~l~ 1277 (1300)
++|||||+++|++|||||||++||+.+...+.+.|++.. .++|||++||+++.+..||++++|++|++++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999999864 378999999999999889999999999999999999987
Q ss_pred hc
Q 000755 1278 EN 1279 (1300)
Q Consensus 1278 ~~ 1279 (1300)
.+
T Consensus 233 ~~ 234 (280)
T PRK13633 233 KE 234 (280)
T ss_pred cC
Confidence 53
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-39 Score=352.06 Aligned_cols=210 Identities=21% Similarity=0.351 Sum_probs=185.7
Q ss_pred EEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCH----HHHhcc
Q 000755 1056 DILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGL----HDLRSR 1131 (1300)
Q Consensus 1056 ~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~----~~lr~~ 1131 (1300)
.+.|+.++|++. .++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+. ...|+.
T Consensus 2 ~~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 80 (218)
T cd03290 2 QVTNGYFSWGSG-LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYS 80 (218)
T ss_pred eeeeeEEecCCC-CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcce
Confidence 577899999765 469999999999999999999999999999999999999999999999998866542 235678
Q ss_pred cEEEcCCCCCCcccHHHhcCCCCCCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCC
Q 000755 1132 LSIIPQDPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSK 1211 (1300)
Q Consensus 1132 i~~vpQ~~~lf~gTvr~Nl~~~~~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~~ 1211 (1300)
++|+||++.+|+.|+++|+.......+++.+++++.+++.+.+...|.++++.+.....+||+|||||++||||++++|+
T Consensus 81 i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 160 (218)
T cd03290 81 VAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTN 160 (218)
T ss_pred EEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 99999999999889999997654455666788899999988888888899998888899999999999999999999999
Q ss_pred EEEEeCCCcCCCHHHHHHHHH--HHHHhc-CCcEEEEEeCChhhhhccCEEEEEeCCE
Q 000755 1212 VLVLDEATASVDTATDNLIQQ--TLRQHF-SDCTVITIAHRITSVIDSDMVLLLSHGI 1266 (1300)
Q Consensus 1212 iLlLDEpTs~lD~~t~~~i~~--~l~~~~-~~~Tvi~iaHrl~~i~~~D~v~vl~~G~ 1266 (1300)
+|||||||++||+.+.+.+.+ .++... .+.|+|++||+++.+..||++++|++|.
T Consensus 161 illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 161 IVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred EEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 999999999999999988887 454433 3689999999999998899999999884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-39 Score=357.18 Aligned_cols=212 Identities=24% Similarity=0.353 Sum_probs=180.2
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHH-Hhccc
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHD-LRSRL 1132 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~-lr~~i 1132 (1300)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+..+ .|+.+
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 82 (237)
T PRK11614 5 MLSFDKVSAHYGK--IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAV 82 (237)
T ss_pred EEEEEeEEEeeCC--ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCE
Confidence 5899999999964 35999999999999999999999999999999999999999999999999998877654 57789
Q ss_pred EEEcCCCCCCcc-cHHHhcCCCCC-CCH----HHHHHHHHHc-CCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHH
Q 000755 1133 SIIPQDPTMFEG-TVRNNLDPLEE-YKD----EEIWEALDKC-QLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRV 1205 (1300)
Q Consensus 1133 ~~vpQ~~~lf~g-Tvr~Nl~~~~~-~~d----~~i~~~l~~~-~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARa 1205 (1300)
+|+||++.+|.+ |+++|+..... ... +++.++++.. ++.+ ........||||||||++||||
T Consensus 83 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~-----------~~~~~~~~LS~G~~qrl~la~a 151 (237)
T PRK11614 83 AIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHE-----------RRIQRAGTMSGGEQQMLAIGRA 151 (237)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHH-----------HHhCchhhCCHHHHHHHHHHHH
Confidence 999999999985 99999864211 111 2233344433 1221 1223456799999999999999
Q ss_pred HccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHHh
Q 000755 1206 LLKKSKVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLE 1278 (1300)
Q Consensus 1206 ll~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~~ 1278 (1300)
++++|+||||||||++||+.+.+.+.+.|++.. +++|||++||+++.+.+ |||+++|++|++++.|+++++.+
T Consensus 152 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 152 LMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred HHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 999999999999999999999999999998864 47999999999998877 99999999999999999999974
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-39 Score=365.93 Aligned_cols=215 Identities=29% Similarity=0.455 Sum_probs=183.0
Q ss_pred eEEEEeeeeeeCCCC---CcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCC----CHH
Q 000755 1054 EVDILNLQVRYAPHL---PLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSI----GLH 1126 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~---~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i----~~~ 1126 (1300)
.|+++|++++|++.. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 478999999997422 3599999999999999999999999999999999999999999999999998643 245
Q ss_pred HHhcccEEEcCCC--CCCcccHHHhcCCC---CCCCH----HHHHHHHHHcCCc-HHHHhhcCCCccccccCCCCCChhH
Q 000755 1127 DLRSRLSIIPQDP--TMFEGTVRNNLDPL---EEYKD----EEIWEALDKCQLG-DEVRNKEGKLDSRVTENGENWSMGQ 1196 (1300)
Q Consensus 1127 ~lr~~i~~vpQ~~--~lf~gTvr~Nl~~~---~~~~d----~~i~~~l~~~~l~-~~i~~~~~gLdt~v~e~G~~LSgGq 1196 (1300)
..|+.++|+||+| .+|..|+++|+.+. ..... +.+.++++.+++. +.. .....+|||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~~LSgGq 150 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLI-----------SKSPFELSGGQ 150 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHh-----------hCCcccCCHHH
Confidence 6678899999998 57778999998531 12222 2356677888775 332 22346799999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChh
Q 000755 1197 RQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPT 1274 (1300)
Q Consensus 1197 rQrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~ 1274 (1300)
|||++|||||+.+|++|||||||++||+.+...+.+.|++.. .+.|||++||+++.+.. ||+|++|++|++++.|+++
T Consensus 151 ~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (287)
T PRK13641 151 MRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPK 230 (287)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999864 46899999999999976 9999999999999999999
Q ss_pred hHHhc
Q 000755 1275 KLLEN 1279 (1300)
Q Consensus 1275 ~l~~~ 1279 (1300)
++.+.
T Consensus 231 ~~~~~ 235 (287)
T PRK13641 231 EIFSD 235 (287)
T ss_pred HHhcC
Confidence 88653
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=356.95 Aligned_cols=212 Identities=25% Similarity=0.409 Sum_probs=182.4
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHH-Hhccc
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHD-LRSRL 1132 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~-lr~~i 1132 (1300)
.++++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... .|+++
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (241)
T PRK10895 3 TLTAKNLAKAYKG--RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI 80 (241)
T ss_pred eEEEeCcEEEeCC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCe
Confidence 4889999999964 35999999999999999999999999999999999999999999999999998776544 56789
Q ss_pred EEEcCCCCCCcc-cHHHhcCCCC----CCC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHH
Q 000755 1133 SIIPQDPTMFEG-TVRNNLDPLE----EYK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLG 1203 (1300)
Q Consensus 1133 ~~vpQ~~~lf~g-Tvr~Nl~~~~----~~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LA 1203 (1300)
+|+||++.+|.+ |+++|+.... ..+ ++.+.+.++..++.+. .......||||||||++||
T Consensus 81 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~la 149 (241)
T PRK10895 81 GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHL-----------RDSMGQSLSGGERRRVEIA 149 (241)
T ss_pred EEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHH-----------hhcchhhCCHHHHHHHHHH
Confidence 999999998875 9999986431 112 1235556666665432 3344568999999999999
Q ss_pred HHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHHh
Q 000755 1204 RVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLE 1278 (1300)
Q Consensus 1204 Rall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~~ 1278 (1300)
||++++|++|||||||++||+.+.+.+.+.+++.. .++|||++||+++.+.. ||+|++|++|++++.|+++++++
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 150 RALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 99999999999999999999999999999998764 47899999999988877 99999999999999999999875
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=360.52 Aligned_cols=219 Identities=25% Similarity=0.448 Sum_probs=186.0
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CcceEEECCeecCC--CCHH
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGEIVIDGINISS--IGLH 1126 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p-----~~G~I~idg~di~~--i~~~ 1126 (1300)
.++++|++++|++. ++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++.. .+..
T Consensus 4 ~l~i~~v~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~ 81 (258)
T PRK14241 4 RIDVKDLNIYYGSF--HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81 (258)
T ss_pred cEEEeeEEEEECCE--eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChH
Confidence 58999999999753 599999999999999999999999999999999999974 79999999999853 3455
Q ss_pred HHhcccEEEcCCCCCCcc-cHHHhcCCC----CCCC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHH
Q 000755 1127 DLRSRLSIIPQDPTMFEG-TVRNNLDPL----EEYK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQR 1197 (1300)
Q Consensus 1127 ~lr~~i~~vpQ~~~lf~g-Tvr~Nl~~~----~~~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqr 1197 (1300)
.+|+.++|+||++.+|.. |+++|+... ...+ ++.+.++++.+++.+.+.. .......+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~ 154 (258)
T PRK14241 82 AVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKD-------RLDKPGGGLSGGQQ 154 (258)
T ss_pred HHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhh-------HhhCCcccCCHHHH
Confidence 678899999999998874 999998531 1111 2345667888887543321 22345578999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhc-cCEEEEEe------CCEEEEe
Q 000755 1198 QLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVID-SDMVLLLS------HGIIEEY 1270 (1300)
Q Consensus 1198 Qrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~-~D~v~vl~------~G~i~e~ 1270 (1300)
||++||||++++|++|||||||++||+.+...+.+.|++..+++|||++||+++.+.. ||+|++|+ +|+|++.
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~ 234 (258)
T PRK14241 155 QRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEI 234 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEec
Confidence 9999999999999999999999999999999999999987667899999999999876 99999997 8999999
Q ss_pred cChhhHHhcCC
Q 000755 1271 DSPTKLLENKS 1281 (1300)
Q Consensus 1271 g~~~~l~~~~~ 1281 (1300)
|+++++++++.
T Consensus 235 ~~~~~~~~~~~ 245 (258)
T PRK14241 235 DDTEKIFSNPT 245 (258)
T ss_pred CCHHHHHhCcC
Confidence 99999986543
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-39 Score=366.13 Aligned_cols=215 Identities=26% Similarity=0.391 Sum_probs=182.7
Q ss_pred EEEEeeeeeeCCCC---CcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCC----CHHH
Q 000755 1055 VDILNLQVRYAPHL---PLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSI----GLHD 1127 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~---~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i----~~~~ 1127 (1300)
|+++|++++|+... .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997532 3599999999999999999999999999999999999999999999999998753 3456
Q ss_pred HhcccEEEcCCC--CCCcccHHHhcCCCC---CCCHH----HHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHH
Q 000755 1128 LRSRLSIIPQDP--TMFEGTVRNNLDPLE---EYKDE----EIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQ 1198 (1300)
Q Consensus 1128 lr~~i~~vpQ~~--~lf~gTvr~Nl~~~~---~~~d~----~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQ 1198 (1300)
+|++++|+||++ .+|+.|+++|+.+.. ..+.+ .+.++++.+++.+. .......+|||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~q 152 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISES----------LFEKNPFELSGGQMR 152 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChh----------hhhCCcccCCHHHHH
Confidence 788999999998 578889999986421 12222 24456677776431 122345679999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC-CcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhH
Q 000755 1199 LVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS-DCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKL 1276 (1300)
Q Consensus 1199 rl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~-~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l 1276 (1300)
|++|||||+++|++|||||||++||+.+.+.+.+.|++..+ ++|||++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (280)
T PRK13649 153 RVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999988643 7899999999999977 999999999999999999998
Q ss_pred Hhc
Q 000755 1277 LEN 1279 (1300)
Q Consensus 1277 ~~~ 1279 (1300)
.+.
T Consensus 233 ~~~ 235 (280)
T PRK13649 233 FQD 235 (280)
T ss_pred hcC
Confidence 753
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=344.94 Aligned_cols=203 Identities=32% Similarity=0.438 Sum_probs=173.1
Q ss_pred EEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC-------------eEE
Q 000755 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-------------TKA 683 (1300)
Q Consensus 617 I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g-------------~~a 683 (1300)
|+|+|+++.|. ++.+++|+||+|++||+++++|||||||||+|+.|.++++|++|+|.++| ++|
T Consensus 2 I~~~nvsk~y~---~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYG---NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcC---CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 78999999996 46899999999999999999999999999999999999999999999998 369
Q ss_pred EEecCCcCC-CCCHHHHHhcCCC---CCHH----HHHHHHHHhcchH-HHhhccCCCcccccCCCCCCCHHHHHHHHHHH
Q 000755 684 YVAQSPWIQ-SGNIEDNILFGKP---MDRE----KYDRVLEACSLKK-DLEILSFGDQTVIGERGINLSGGQKQRIQIAR 754 (1300)
Q Consensus 684 yv~Q~~~l~-~~Ti~eNI~fg~~---~~~~----~~~~vl~~~~l~~-dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLAR 754 (1300)
||-|+.-+| +.||.|||.+--. ++++ +.++.++..+|+. +. ...-...|||||+|||.+||
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~----------~~RyP~eLSGGQQQRVGv~R 148 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEY----------ADRYPHELSGGQQQRVGVAR 148 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHH----------hhcCchhcCcchhhHHHHHH
Confidence 999999987 5799999987533 4444 4455666666653 12 12334689999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhh-cCCcEEEEEecCCCc-cccCCEEEEEeCCeEEEecChHHHHhcCc
Q 000755 755 ALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LRSKTVIYVTHQVEF-LPAADLILVMKDGKITQAGKYNDILNSGT 832 (1300)
Q Consensus 755 Aly~~~~illLDep~saLD~~t~~~i~~~~~~~~-l~~~TvIlvtH~~~~-l~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 832 (1300)
||..+|+|+|+||||+||||-++..+-++...-. .-++|+|+|||+++. +..+|+|.+|++|+|++.+++++++.+..
T Consensus 149 ALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pa 228 (309)
T COG1125 149 ALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPA 228 (309)
T ss_pred HHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCcc
Confidence 9999999999999999999999998865543221 238999999999987 56699999999999999999999997654
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=357.27 Aligned_cols=219 Identities=26% Similarity=0.432 Sum_probs=187.6
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CcceEEECCeecC-CCCHHH
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGEIVIDGINIS-SIGLHD 1127 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p-----~~G~I~idg~di~-~i~~~~ 1127 (1300)
.++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.++. ..+...
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 80 (249)
T PRK14253 3 KFNIENLDLFYGE--NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVAD 80 (249)
T ss_pred eEEEeccEEEECC--eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHH
Confidence 4889999999974 3599999999999999999999999999999999999986 5999999999985 345667
Q ss_pred HhcccEEEcCCCCCCcccHHHhcCCCC---CC-C----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHH
Q 000755 1128 LRSRLSIIPQDPTMFEGTVRNNLDPLE---EY-K----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQL 1199 (1300)
Q Consensus 1128 lr~~i~~vpQ~~~lf~gTvr~Nl~~~~---~~-~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQr 1199 (1300)
+|+.++|+||++.+|..|+++|+.... .. . ++++.++++.+++.+.+. .........||||||||
T Consensus 81 ~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~~qr 153 (249)
T PRK14253 81 LRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVK-------DRLKSHAFGLSGGQQQR 153 (249)
T ss_pred HHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhh-------HHhhcCcccCCHHHHHH
Confidence 788999999999999899999996421 11 1 234556677777754432 12334567899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHHh
Q 000755 1200 VCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLE 1278 (1300)
Q Consensus 1200 l~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~~ 1278 (1300)
++|||||+.+|++|||||||++||+.+...+.+.|++..++.|||++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 154 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (249)
T PRK14253 154 LCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFS 233 (249)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 99999999999999999999999999999999999987667899999999999887 99999999999999999999876
Q ss_pred cCC
Q 000755 1279 NKS 1281 (1300)
Q Consensus 1279 ~~~ 1281 (1300)
++.
T Consensus 234 ~~~ 236 (249)
T PRK14253 234 NPK 236 (249)
T ss_pred CCC
Confidence 543
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=361.06 Aligned_cols=223 Identities=23% Similarity=0.434 Sum_probs=189.8
Q ss_pred CCCceEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CcceEEECCeecCC--
Q 000755 1050 PTHGEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGEIVIDGINISS-- 1122 (1300)
Q Consensus 1050 p~~g~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p-----~~G~I~idg~di~~-- 1122 (1300)
|....|+++|++++|+.. ++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++..
T Consensus 16 ~~~~~l~~~nl~~~~~~~--~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~ 93 (274)
T PRK14265 16 PDHSVFEVEGVKVFYGGF--LALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQ 93 (274)
T ss_pred CCCceEEEeeEEEEeCCe--EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEeccccc
Confidence 334579999999999753 599999999999999999999999999999999999864 69999999999864
Q ss_pred CCHHHHhcccEEEcCCCCCCcccHHHhcCCCCC---C---CHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhH
Q 000755 1123 IGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEE---Y---KDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQ 1196 (1300)
Q Consensus 1123 i~~~~lr~~i~~vpQ~~~lf~gTvr~Nl~~~~~---~---~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGq 1196 (1300)
.....+|++++|+||++.+|+.|+.+|+..... . .++.+.++++.+++.+.+.. .....+..|||||
T Consensus 94 ~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq 166 (274)
T PRK14265 94 INSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKD-------KLKEKGTALSGGQ 166 (274)
T ss_pred chhHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHH-------HhcCCcccCCHHH
Confidence 334467889999999999998899999964211 1 23445667888887654432 2234567899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhc-cCEEEEEe---------CCE
Q 000755 1197 RQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVID-SDMVLLLS---------HGI 1266 (1300)
Q Consensus 1197 rQrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~-~D~v~vl~---------~G~ 1266 (1300)
|||++|||||+++|++|||||||++||+.+.+.+.+.|++..+++|||++||+++.+.. |||+++|+ +|+
T Consensus 167 ~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~ 246 (274)
T PRK14265 167 QQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGK 246 (274)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCce
Confidence 99999999999999999999999999999999999999988767899999999999987 99999998 899
Q ss_pred EEEecChhhHHhcCC
Q 000755 1267 IEEYDSPTKLLENKS 1281 (1300)
Q Consensus 1267 i~e~g~~~~l~~~~~ 1281 (1300)
+++.|+++++..++.
T Consensus 247 ~~~~g~~~~~~~~~~ 261 (274)
T PRK14265 247 LVEFSPTEQMFGSPQ 261 (274)
T ss_pred EEEeCCHHHHHhCCC
Confidence 999999999986544
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=364.35 Aligned_cols=225 Identities=24% Similarity=0.408 Sum_probs=188.9
Q ss_pred CceEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCC-----CCcceEEECCeecCCC--C
Q 000755 1052 HGEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVE-----PTAGEIVIDGINISSI--G 1124 (1300)
Q Consensus 1052 ~g~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~-----p~~G~I~idg~di~~i--~ 1124 (1300)
...|+++|++++|+.. ++|+|+||+|++||++||+|+||||||||+++|+|+.+ |++|+|.+||.++... .
T Consensus 37 ~~~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 37 KPHVVAKNFSIYYGEF--EAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred ceEEEEeeeEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 4468999999999653 59999999999999999999999999999999999865 4999999999998643 2
Q ss_pred HHHHhcccEEEcCCCCCCcccHHHhcCCCC---CC-C----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhH
Q 000755 1125 LHDLRSRLSIIPQDPTMFEGTVRNNLDPLE---EY-K----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQ 1196 (1300)
Q Consensus 1125 ~~~lr~~i~~vpQ~~~lf~gTvr~Nl~~~~---~~-~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGq 1196 (1300)
...+|++++|+||++.+|..|+++|+.+.. .. + ++.+.++++.+++.+.+.. .....+..|||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq 187 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSD-------RLDKNALGLSGGQ 187 (286)
T ss_pred hHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhh-------HhhCChhhCCHHH
Confidence 345788999999999999889999996421 11 1 2345667777776533221 1234567899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhh
Q 000755 1197 RQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTK 1275 (1300)
Q Consensus 1197 rQrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~ 1275 (1300)
|||++|||||+.+|++|||||||++||+.+.+.+.+.|++..+++|||++||+++.+.+ ||+|++|++|++++.|++++
T Consensus 188 ~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~ 267 (286)
T PRK14275 188 QQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQ 267 (286)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999987667899999999999987 99999999999999999999
Q ss_pred HHhcCCChHH
Q 000755 1276 LLENKSSSFA 1285 (1300)
Q Consensus 1276 l~~~~~~~f~ 1285 (1300)
+.+++...+.
T Consensus 268 ~~~~~~~~~~ 277 (286)
T PRK14275 268 LFTNPKDRMT 277 (286)
T ss_pred HHhCCCcHHH
Confidence 9876554443
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=360.57 Aligned_cols=220 Identities=28% Similarity=0.439 Sum_probs=188.5
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CcceEEECCeecCCCC-HHH
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGEIVIDGINISSIG-LHD 1127 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p-----~~G~I~idg~di~~i~-~~~ 1127 (1300)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++.+.+ ...
T Consensus 21 ~l~i~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (276)
T PRK14271 21 AMAAVNLTLGFAG--KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE 98 (276)
T ss_pred EEEEeeEEEEECC--EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence 6899999999975 3699999999999999999999999999999999999986 7999999999987653 346
Q ss_pred HhcccEEEcCCCCCCcccHHHhcCCC----CCCCHHH----HHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHH
Q 000755 1128 LRSRLSIIPQDPTMFEGTVRNNLDPL----EEYKDEE----IWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQL 1199 (1300)
Q Consensus 1128 lr~~i~~vpQ~~~lf~gTvr~Nl~~~----~~~~d~~----i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQr 1199 (1300)
+|++++|+||++.+|+.|+++|+... ...++++ +.+.++.+++.+... +.....+.+||||||||
T Consensus 99 ~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~LSgGq~qr 171 (276)
T PRK14271 99 FRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVK-------DRLSDSPFRLSGGQQQL 171 (276)
T ss_pred HhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhh-------hHhhCCcccCCHHHHHH
Confidence 78899999999999999999999642 1123333 345567777654321 22345667899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHHh
Q 000755 1200 VCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLE 1278 (1300)
Q Consensus 1200 l~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~~ 1278 (1300)
++|||||+++|++|||||||++||+.+.+.+.+.|++..+++|||++||+++.+.. ||||++|++|++++.|+++++.+
T Consensus 172 l~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 251 (276)
T PRK14271 172 LCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFS 251 (276)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999987667899999999999887 99999999999999999999987
Q ss_pred cCCC
Q 000755 1279 NKSS 1282 (1300)
Q Consensus 1279 ~~~~ 1282 (1300)
.+..
T Consensus 252 ~~~~ 255 (276)
T PRK14271 252 SPKH 255 (276)
T ss_pred CcCc
Confidence 6443
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=358.88 Aligned_cols=212 Identities=27% Similarity=0.390 Sum_probs=185.5
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccE
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLS 1133 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~ 1133 (1300)
.|+++|++++|++ ..+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+...++++++
T Consensus 2 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 2 MLEARNLSVRLGG--RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred eEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 4789999999975 35999999999999999999999999999999999999999999999999998887777888999
Q ss_pred EEcCCCCC-CcccHHHhcCCCCC---C----CHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHH
Q 000755 1134 IIPQDPTM-FEGTVRNNLDPLEE---Y----KDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRV 1205 (1300)
Q Consensus 1134 ~vpQ~~~l-f~gTvr~Nl~~~~~---~----~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARa 1205 (1300)
|+||++.+ +..|+++|+..... . .++.+.++++.+++.+...+ ....||||||||++||||
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGe~qrv~la~a 148 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGR-----------DYPQLSGGEQQRVQLARV 148 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcC-----------CcccCCHHHHHHHHHHHH
Confidence 99999987 56799999864211 1 13456778888887654333 346789999999999999
Q ss_pred Hc------cCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc--CCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhH
Q 000755 1206 LL------KKSKVLVLDEATASVDTATDNLIQQTLRQHF--SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKL 1276 (1300)
Q Consensus 1206 ll------~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l 1276 (1300)
|+ .+|++|||||||++||+.+.+.+.+.|++.. .+.|||++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 149 l~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (258)
T PRK13548 149 LAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEV 228 (258)
T ss_pred HhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHH
Confidence 99 5999999999999999999999999999864 46899999999999986 999999999999999999988
Q ss_pred Hh
Q 000755 1277 LE 1278 (1300)
Q Consensus 1277 ~~ 1278 (1300)
.+
T Consensus 229 ~~ 230 (258)
T PRK13548 229 LT 230 (258)
T ss_pred hC
Confidence 75
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=369.37 Aligned_cols=228 Identities=25% Similarity=0.369 Sum_probs=189.3
Q ss_pred ceEEEEeeeeeeCC--CCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCC---cceEEECCeecCCCCHHH
Q 000755 1053 GEVDILNLQVRYAP--HLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPT---AGEIVIDGINISSIGLHD 1127 (1300)
Q Consensus 1053 g~i~~~~v~~~y~~--~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~---~G~I~idg~di~~i~~~~ 1127 (1300)
..++++|+++.|+. +...+++||||+|++||++||+|+||||||||+++|+|+++|. +|+|.+||.++..++.++
T Consensus 11 ~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~ 90 (330)
T PRK09473 11 ALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKE 90 (330)
T ss_pred ceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHH
Confidence 36899999999963 2235899999999999999999999999999999999999996 999999999999888776
Q ss_pred Hh----cccEEEcCCC--CCCc-ccHHHhcC----CCCCCCH----HHHHHHHHHcCCcHHHHhhcCCCccccccCCCCC
Q 000755 1128 LR----SRLSIIPQDP--TMFE-GTVRNNLD----PLEEYKD----EEIWEALDKCQLGDEVRNKEGKLDSRVTENGENW 1192 (1300)
Q Consensus 1128 lr----~~i~~vpQ~~--~lf~-gTvr~Nl~----~~~~~~d----~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~L 1192 (1300)
+| ++|+||||+| .+++ .|+.+|+. .....+. +.+.++|+.+++.+. . ..+...+..|
T Consensus 91 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~-------~-~~~~~~p~~L 162 (330)
T PRK09473 91 LNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEA-------R-KRMKMYPHEF 162 (330)
T ss_pred HHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCh-------H-HHhcCCcccC
Confidence 53 4799999999 4554 37777663 2222232 345667777776431 1 1234456789
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhc-cCEEEEEeCCEEEE
Q 000755 1193 SMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGIIEE 1269 (1300)
Q Consensus 1193 SgGqrQrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e 1269 (1300)
|||||||++|||||+.+|++||+||||++||+.+...|.+.|++..+ +.|+|+|||+++.+.. ||||+||++|+|+|
T Consensus 163 SgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive 242 (330)
T PRK09473 163 SGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTME 242 (330)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999988653 6899999999999986 99999999999999
Q ss_pred ecChhhHHhcCCChHHHHH
Q 000755 1270 YDSPTKLLENKSSSFAQLV 1288 (1300)
Q Consensus 1270 ~g~~~~l~~~~~~~f~~l~ 1288 (1300)
.|+++++++++...|.+.+
T Consensus 243 ~g~~~~i~~~p~~pyt~~l 261 (330)
T PRK09473 243 YGNARDVFYQPSHPYSIGL 261 (330)
T ss_pred ECCHHHHHhCCCCHHHHHH
Confidence 9999999987766565543
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=358.89 Aligned_cols=222 Identities=22% Similarity=0.359 Sum_probs=191.1
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CcceEEECCeecCCC--CHH
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGEIVIDGINISSI--GLH 1126 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p-----~~G~I~idg~di~~i--~~~ 1126 (1300)
.+.+++++++|++. ++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++... ...
T Consensus 8 ~~~~~~~~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 85 (261)
T PRK14263 8 VMDCKLDKIFYGNF--MAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV 85 (261)
T ss_pred eEEEEeEEEEeCCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence 48899999999753 599999999999999999999999999999999999987 799999999998643 334
Q ss_pred HHhcccEEEcCCCCCCcccHHHhcCCCCC------CCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHH
Q 000755 1127 DLRSRLSIIPQDPTMFEGTVRNNLDPLEE------YKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLV 1200 (1300)
Q Consensus 1127 ~lr~~i~~vpQ~~~lf~gTvr~Nl~~~~~------~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl 1200 (1300)
.+|++++|+||++.+|..|+++|+..... ..++++.++++.+++.+.+.. ...+...+||+|||||+
T Consensus 86 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~~qrv 158 (261)
T PRK14263 86 VVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-------KLKVSGLSLSGGQQQRL 158 (261)
T ss_pred hhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHHHHH
Confidence 66888999999999998999999964311 123467788999988655432 22346678999999999
Q ss_pred HHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhc-cCEEEEEe--------CCEEEEec
Q 000755 1201 CLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVID-SDMVLLLS--------HGIIEEYD 1271 (1300)
Q Consensus 1201 ~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~-~D~v~vl~--------~G~i~e~g 1271 (1300)
+|||||+++|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+.+ ||||++|+ +|++++.|
T Consensus 159 ~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g 238 (261)
T PRK14263 159 CIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMG 238 (261)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeC
Confidence 9999999999999999999999999999999999988667899999999999887 99999996 89999999
Q ss_pred ChhhHHhcCCChH
Q 000755 1272 SPTKLLENKSSSF 1284 (1300)
Q Consensus 1272 ~~~~l~~~~~~~f 1284 (1300)
+++++++++...+
T Consensus 239 ~~~~~~~~~~~~~ 251 (261)
T PRK14263 239 PTAQIFQNPREQL 251 (261)
T ss_pred CHHHHHhCCCcHH
Confidence 9999987654334
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=353.65 Aligned_cols=207 Identities=22% Similarity=0.302 Sum_probs=178.1
Q ss_pred ceEEEEeeeeeeCCCC--CcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHH---
Q 000755 1053 GEVDILNLQVRYAPHL--PLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHD--- 1127 (1300)
Q Consensus 1053 g~i~~~~v~~~y~~~~--~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~--- 1127 (1300)
..|+++|++++|++.. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+...
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 84 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHH
Confidence 3699999999997532 25899999999999999999999999999999999999999999999999998776543
Q ss_pred H-hcccEEEcCCCCCCcc-cHHHhcCCC---CCC----CHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHH
Q 000755 1128 L-RSRLSIIPQDPTMFEG-TVRNNLDPL---EEY----KDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQ 1198 (1300)
Q Consensus 1128 l-r~~i~~vpQ~~~lf~g-Tvr~Nl~~~---~~~----~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQ 1198 (1300)
. +++++|+||++.+|.. |+++|+... ... ..+++.++++.+++.+...+.+ ..|||||||
T Consensus 85 ~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Ge~q 153 (228)
T PRK10584 85 LRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP-----------AQLSGGEQQ 153 (228)
T ss_pred HHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh-----------hhCCHHHHH
Confidence 2 3579999999998875 999998531 111 1345777888888866554433 468999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhccCEEEEEeCCEEEEe
Q 000755 1199 LVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVIDSDMVLLLSHGIIEEY 1270 (1300)
Q Consensus 1199 rl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~~D~v~vl~~G~i~e~ 1270 (1300)
|++|||||+++|++|||||||++||+.+.+.+.+.|++..+ ++|||++||+++.+..||++++|++|++++.
T Consensus 154 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 154 RVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 99999999999999999999999999999999999988642 6899999999999878999999999999864
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=395.81 Aligned_cols=199 Identities=25% Similarity=0.338 Sum_probs=166.8
Q ss_pred CCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCC--CCcceEEECCeecCCCCHHHHhcccEEEcCCCC-CCc
Q 000755 1067 HLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVE--PTAGEIVIDGINISSIGLHDLRSRLSIIPQDPT-MFE 1143 (1300)
Q Consensus 1067 ~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~--p~~G~I~idg~di~~i~~~~lr~~i~~vpQ~~~-lf~ 1143 (1300)
+...+|+||+=-++||-.+|++|.||||||||+++|+|-.. ..+|.|+|||.+..+ +..++++|||-|+.. +-+
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~ 878 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPE 878 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCcc
Confidence 44568999999999999999999999999999999999754 357899999998753 678899999999774 545
Q ss_pred ccHHHhcCCC------CCCCHHH----HHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCC-CE
Q 000755 1144 GTVRNNLDPL------EEYKDEE----IWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKS-KV 1212 (1300)
Q Consensus 1144 gTvr~Nl~~~------~~~~d~~----i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~-~i 1212 (1300)
-||||-|.+. .+.+++| +.++++.++|.+.- |..||..|+.||..||.|+.||=-|+.+| .|
T Consensus 879 ~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~-------daiVG~~G~GLs~eQRKrLTIgVELvA~P~~i 951 (1391)
T KOG0065|consen 879 LTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYA-------DALVGLPGSGLSTEQRKRLTIGVELVANPSSI 951 (1391)
T ss_pred cchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhh-------hhhccCCCCCCCHHHhceeeEEEEEecCCcee
Confidence 5999998531 2334433 56777777776553 44688999999999999999999999999 89
Q ss_pred EEEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhh--hccCEEEEEeC-CEEEEecChhh
Q 000755 1213 LVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSV--IDSDMVLLLSH-GIIEEYDSPTK 1275 (1300)
Q Consensus 1213 LlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i--~~~D~v~vl~~-G~i~e~g~~~~ 1275 (1300)
|+|||||||||..+...|.+++|+.. .|+||++.-|.++.. +..|+++.|++ |+.+.+|++.+
T Consensus 952 lFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 952 LFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred EEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 99999999999999999999999976 589999999998764 45999999975 68998887544
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=366.36 Aligned_cols=217 Identities=24% Similarity=0.358 Sum_probs=182.2
Q ss_pred CceEEEEeeeeeeCCCC---CcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCC----C-
Q 000755 1052 HGEVDILNLQVRYAPHL---PLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISS----I- 1123 (1300)
Q Consensus 1052 ~g~i~~~~v~~~y~~~~---~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~----i- 1123 (1300)
.+.|+++|++++|+... .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.. .
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 46799999999997542 259999999999999999999999999999999999999999999999999852 2
Q ss_pred CHHHHhcccEEEcCCC--CCCcccHHHhcCCCC---CCCHH----HHHHHHHHcCCcHHHHhhcCCCccccccCCCCCCh
Q 000755 1124 GLHDLRSRLSIIPQDP--TMFEGTVRNNLDPLE---EYKDE----EIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSM 1194 (1300)
Q Consensus 1124 ~~~~lr~~i~~vpQ~~--~lf~gTvr~Nl~~~~---~~~d~----~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSg 1194 (1300)
+...+|++++|+||+| .+|..|+++|+.+.. ....+ .+.++++.+++.+ .........|||
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~----------~~~~~~~~~LS~ 153 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPE----------DYVKRSPFELSG 153 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hHhcCChhhCCH
Confidence 3456788999999998 467789999986421 12222 2445566666521 112334568999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhc-cCEEEEEeCCEEEEec
Q 000755 1195 GQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGIIEEYD 1271 (1300)
Q Consensus 1195 GqrQrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g 1271 (1300)
|||||++|||||+.+|++|||||||++||+.+.+.+.+.|++..+ ++|||+|||+++.+.. ||+|++|++|++++.|
T Consensus 154 Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g 233 (289)
T PRK13645 154 GQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIG 233 (289)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999988653 7899999999999876 9999999999999999
Q ss_pred ChhhHHh
Q 000755 1272 SPTKLLE 1278 (1300)
Q Consensus 1272 ~~~~l~~ 1278 (1300)
+++++.+
T Consensus 234 ~~~~~~~ 240 (289)
T PRK13645 234 SPFEIFS 240 (289)
T ss_pred CHHHHhc
Confidence 9998865
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-39 Score=340.54 Aligned_cols=215 Identities=24% Similarity=0.428 Sum_probs=186.5
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHH-hccc
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDL-RSRL 1132 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~l-r~~i 1132 (1300)
.++++|++..|+.. .+|+||||++++||+++++||||+|||||+++|+|+.+|.+|+|.++|.||+..++++. |..|
T Consensus 3 mL~v~~l~~~YG~~--~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi 80 (237)
T COG0410 3 MLEVENLSAGYGKI--QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI 80 (237)
T ss_pred ceeEEeEeecccce--eEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence 47899999999873 59999999999999999999999999999999999999999999999999999998885 6679
Q ss_pred EEEcCCCCCCcc-cHHHhcCCCCCC-C-----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHH
Q 000755 1133 SIIPQDPTMFEG-TVRNNLDPLEEY-K-----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRV 1205 (1300)
Q Consensus 1133 ~~vpQ~~~lf~g-Tvr~Nl~~~~~~-~-----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARa 1205 (1300)
+||||...+|+. ||.|||...... . +..+.++.+. ...|.......+.+|||||||.++||||
T Consensus 81 ~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~l----------FP~Lker~~~~aG~LSGGEQQMLAiaRA 150 (237)
T COG0410 81 AYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYEL----------FPRLKERRNQRAGTLSGGEQQMLAIARA 150 (237)
T ss_pred EeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHH----------ChhHHHHhcCcccCCChHHHHHHHHHHH
Confidence 999999999976 999999643111 1 1112233322 2234445556778999999999999999
Q ss_pred HccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHHhcC
Q 000755 1206 LLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENK 1280 (1300)
Q Consensus 1206 ll~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~~~~ 1280 (1300)
|+.+|++|+|||||.||-|.-.+.|.++|++..+ +.||+.|-++.....+ +||.+||++|+|+..|++++|.+++
T Consensus 151 Lm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~ 228 (237)
T COG0410 151 LMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADP 228 (237)
T ss_pred HhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCH
Confidence 9999999999999999999999999999999764 4699999999999987 9999999999999999999999764
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-39 Score=339.59 Aligned_cols=172 Identities=33% Similarity=0.576 Sum_probs=161.3
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEE
Q 000755 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSI 1134 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~ 1134 (1300)
|+++|++++|+....++++++||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|++++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 47899999997543469999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EcCCCCCCcccHHHhcCCCCCCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEE
Q 000755 1135 IPQDPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLV 1214 (1300)
Q Consensus 1135 vpQ~~~lf~gTvr~Nl~~~~~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~~iLl 1214 (1300)
++|++.+|++|+++|+ ||||||||++||||++++|++||
T Consensus 81 ~~q~~~~~~~tv~~~l-----------------------------------------LS~G~~qrv~la~al~~~p~~ll 119 (173)
T cd03246 81 LPQDDELFSGSIAENI-----------------------------------------LSGGQRQRLGLARALYGNPRILV 119 (173)
T ss_pred ECCCCccccCcHHHHC-----------------------------------------cCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999997 79999999999999999999999
Q ss_pred EeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhccCEEEEEeCCEE
Q 000755 1215 LDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVIDSDMVLLLSHGII 1267 (1300)
Q Consensus 1215 LDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~~D~v~vl~~G~i 1267 (1300)
|||||++||+.+...+.+.|++.. +++|+|++||+++.+..||+|++|++|++
T Consensus 120 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 120 LDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 999999999999999999998864 37899999999999877999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=360.95 Aligned_cols=228 Identities=26% Similarity=0.351 Sum_probs=189.7
Q ss_pred eEEEEeeeeeeCCC-------CCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHH
Q 000755 1054 EVDILNLQVRYAPH-------LPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLH 1126 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~-------~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~ 1126 (1300)
.|+++|++++|+.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 48999999999631 23699999999999999999999999999999999999999999999999998755555
Q ss_pred HHhcccEEEcCCCC--CCcc-cHHHhcCC----CCCC----CHHHHHHHHHHcCCc-HHHHhhcCCCccccccCCCCCCh
Q 000755 1127 DLRSRLSIIPQDPT--MFEG-TVRNNLDP----LEEY----KDEEIWEALDKCQLG-DEVRNKEGKLDSRVTENGENWSM 1194 (1300)
Q Consensus 1127 ~lr~~i~~vpQ~~~--lf~g-Tvr~Nl~~----~~~~----~d~~i~~~l~~~~l~-~~i~~~~~gLdt~v~e~G~~LSg 1194 (1300)
..+++++|+||++. ++.. |+.+|+.. .... .++++.++++.+++. +.... ...+||+
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~~LS~ 152 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASY-----------YPHMLAP 152 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhc-----------CchhcCH
Confidence 56678999999985 4443 88888742 1111 134577889999884 32221 2357999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhc-cCEEEEEeCCEEEEec
Q 000755 1195 GQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGIIEEYD 1271 (1300)
Q Consensus 1195 GqrQrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g 1271 (1300)
|||||++|||||+++|+||||||||++||+.+.+.+.+.|++..+ +.|||++||+++.+.. ||+|++|++|++++.|
T Consensus 153 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999998642 6899999999999987 9999999999999999
Q ss_pred ChhhHHhcCC-ChHHHHHHHHh
Q 000755 1272 SPTKLLENKS-SSFAQLVAEYT 1292 (1300)
Q Consensus 1272 ~~~~l~~~~~-~~f~~l~~~~~ 1292 (1300)
+++++.+.+. ..+++++..+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~ 254 (267)
T PRK15112 233 STADVLASPLHELTKRLIAGHF 254 (267)
T ss_pred CHHHHhcCCCCHHHHHHHHhcc
Confidence 9999987643 34556766544
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=357.61 Aligned_cols=224 Identities=22% Similarity=0.387 Sum_probs=186.4
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCC-----cceEEECCeecCC--CCHH
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPT-----AGEIVIDGINISS--IGLH 1126 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~-----~G~I~idg~di~~--i~~~ 1126 (1300)
.++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.+||.++.. .+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (252)
T PRK14272 4 LLSAQDVNIYYGD--KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81 (252)
T ss_pred EEEEeeeEEEECC--EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHH
Confidence 4789999999974 35999999999999999999999999999999999999874 8999999999864 3345
Q ss_pred HHhcccEEEcCCCCCCcc-cHHHhcCCC---CCC-CHHH----HHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHH
Q 000755 1127 DLRSRLSIIPQDPTMFEG-TVRNNLDPL---EEY-KDEE----IWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQR 1197 (1300)
Q Consensus 1127 ~lr~~i~~vpQ~~~lf~g-Tvr~Nl~~~---~~~-~d~~----i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqr 1197 (1300)
.+|++++|+||++.+|.. |+++|+... ... .+++ ..+.++..++.+.+. ..++ ....+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~---~~~~----~~~~~LS~G~~ 154 (252)
T PRK14272 82 AMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVK---DRLK----TPATGLSGGQQ 154 (252)
T ss_pred HhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhh---hhhc----CCcccCCHHHH
Confidence 678899999999998875 999998531 111 2222 333455555543321 2223 34578999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhH
Q 000755 1198 QLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKL 1276 (1300)
Q Consensus 1198 Qrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l 1276 (1300)
||++|||||+++|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.+ ||||++|++|++++.|+++++
T Consensus 155 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14272 155 QRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQL 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999987667999999999999987 999999999999999999999
Q ss_pred HhcCCChHHH
Q 000755 1277 LENKSSSFAQ 1286 (1300)
Q Consensus 1277 ~~~~~~~f~~ 1286 (1300)
++++...+.+
T Consensus 235 ~~~~~~~~~~ 244 (252)
T PRK14272 235 FTNPRDERTE 244 (252)
T ss_pred HhCcCcHHHH
Confidence 8766554533
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=353.82 Aligned_cols=211 Identities=25% Similarity=0.413 Sum_probs=178.8
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHH-HhcccE
Q 000755 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHD-LRSRLS 1133 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~-lr~~i~ 1133 (1300)
|+++||+++|+.. ++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+... .+++++
T Consensus 1 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (230)
T TIGR03410 1 LEVSNLNVYYGQS--HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIA 78 (230)
T ss_pred CEEEeEEEEeCCe--EEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeE
Confidence 4789999999753 5999999999999999999999999999999999999999999999999998776654 467899
Q ss_pred EEcCCCCCCcc-cHHHhcCCCC-C--CCHH-HHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHcc
Q 000755 1134 IIPQDPTMFEG-TVRNNLDPLE-E--YKDE-EIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLK 1208 (1300)
Q Consensus 1134 ~vpQ~~~lf~g-Tvr~Nl~~~~-~--~~d~-~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~ 1208 (1300)
|+||++.+|.. |+++|+.... . ...+ ...++++..+ +++........+||||||||++|||||++
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~la~al~~ 148 (230)
T TIGR03410 79 YVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFP----------VLKEMLGRRGGDLSGGQQQQLAIARALVT 148 (230)
T ss_pred EeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHH----------hHHHHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 99999999976 9999986321 1 1112 2233444443 12223344556899999999999999999
Q ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHH
Q 000755 1209 KSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLL 1277 (1300)
Q Consensus 1209 ~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~ 1277 (1300)
+|+++||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 149 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~ 220 (230)
T TIGR03410 149 RPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220 (230)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcC
Confidence 9999999999999999999999999998653 6899999999999987 9999999999999999998873
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=358.71 Aligned_cols=222 Identities=26% Similarity=0.431 Sum_probs=189.9
Q ss_pred ceEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCC-----cceEEECCeecCC--CCH
Q 000755 1053 GEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPT-----AGEIVIDGINISS--IGL 1125 (1300)
Q Consensus 1053 g~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~-----~G~I~idg~di~~--i~~ 1125 (1300)
+.|+++|++++|+. +.+|+|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.+||.+++. .+.
T Consensus 6 ~~l~~~nl~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~ 83 (261)
T PRK14258 6 PAIKVNNLSFYYDT--QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNL 83 (261)
T ss_pred ceEEEeeEEEEeCC--eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccch
Confidence 46999999999964 35999999999999999999999999999999999999986 8999999999853 344
Q ss_pred HHHhcccEEEcCCCCCCcccHHHhcCCCC---CC-C----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHH
Q 000755 1126 HDLRSRLSIIPQDPTMFEGTVRNNLDPLE---EY-K----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQR 1197 (1300)
Q Consensus 1126 ~~lr~~i~~vpQ~~~lf~gTvr~Nl~~~~---~~-~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqr 1197 (1300)
..+|+.++|+||++.+|+.|+++|+.... .. + ++.+.++++.+++.+++.. .....+..||||||
T Consensus 84 ~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~ 156 (261)
T PRK14258 84 NRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKH-------KIHKSALDLSGGQQ 156 (261)
T ss_pred HHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHHH
Confidence 56788899999999999999999986321 11 2 2346678888887654432 23445678999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc--CCcEEEEEeCChhhhhc-cCEEEEEeC-----CEEEE
Q 000755 1198 QLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF--SDCTVITIAHRITSVID-SDMVLLLSH-----GIIEE 1269 (1300)
Q Consensus 1198 Qrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~iaHrl~~i~~-~D~v~vl~~-----G~i~e 1269 (1300)
||++|||||+++|++|||||||++||+.+...+.+.|++.. .++|+|+|||+++.+.. ||+|++|++ |++++
T Consensus 157 qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~ 236 (261)
T PRK14258 157 QRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVE 236 (261)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEE
Confidence 99999999999999999999999999999999999998853 47999999999999987 999999999 99999
Q ss_pred ecChhhHHhcCCCh
Q 000755 1270 YDSPTKLLENKSSS 1283 (1300)
Q Consensus 1270 ~g~~~~l~~~~~~~ 1283 (1300)
.|+++++.+++...
T Consensus 237 ~~~~~~~~~~~~~~ 250 (261)
T PRK14258 237 FGLTKKIFNSPHDS 250 (261)
T ss_pred eCCHHHHHhCCCCH
Confidence 99999998765543
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=357.55 Aligned_cols=204 Identities=26% Similarity=0.381 Sum_probs=178.7
Q ss_pred ceEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhccc
Q 000755 1053 GEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRL 1132 (1300)
Q Consensus 1053 g~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i 1132 (1300)
..|+++|++++|+. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. .+++++
T Consensus 11 ~~l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i 83 (257)
T PRK11247 11 TPLLLNAVSKRYGE--RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDT 83 (257)
T ss_pred CcEEEEEEEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCce
Confidence 45999999999975 35999999999999999999999999999999999999999999999998763 467889
Q ss_pred EEEcCCCCCCc-ccHHHhcCCCC-CCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCC
Q 000755 1133 SIIPQDPTMFE-GTVRNNLDPLE-EYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKS 1210 (1300)
Q Consensus 1133 ~~vpQ~~~lf~-gTvr~Nl~~~~-~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~ 1210 (1300)
+|+||++.+|+ .|+++|+.+.. ...++++.++++.+++.+...+ ...+||||||||++|||||+++|
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGqkqrl~laraL~~~p 152 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANE-----------WPAALSGGQKQRVALARALIHRP 152 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcC-----------ChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999999887 59999997532 2235567888998888654333 34679999999999999999999
Q ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHhc--CCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChh
Q 000755 1211 KVLVLDEATASVDTATDNLIQQTLRQHF--SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPT 1274 (1300)
Q Consensus 1211 ~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~ 1274 (1300)
++|||||||++||+.+...+.+.|++.. .++|||+|||+++.+.. ||+|++|++|++++.++.+
T Consensus 153 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 153 GLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999999999999998864 36899999999999876 9999999999999987654
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=349.01 Aligned_cols=200 Identities=27% Similarity=0.386 Sum_probs=174.0
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEE
Q 000755 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSI 1134 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~ 1134 (1300)
|+++|++++|++. . .|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+. .|++++|
T Consensus 1 i~~~~l~~~~~~~--~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 74 (211)
T cd03298 1 VRLDKIRFSYGEQ--P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVSM 74 (211)
T ss_pred CEEEeEEEEeCCE--e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEEE
Confidence 5789999999753 2 39999999999999999999999999999999999999999999999876543 3578999
Q ss_pred EcCCCCCCcc-cHHHhcCCCCC-------CCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHH
Q 000755 1135 IPQDPTMFEG-TVRNNLDPLEE-------YKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVL 1206 (1300)
Q Consensus 1135 vpQ~~~lf~g-Tvr~Nl~~~~~-------~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARal 1206 (1300)
+||++.+|.+ |+++|+.+... ..++++.++++.+++.+...+.+ .+||+|||||++||||+
T Consensus 75 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ia~al 143 (211)
T cd03298 75 LFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP-----------GELSGGERQRVALARVL 143 (211)
T ss_pred EecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc-----------ccCCHHHHHHHHHHHHH
Confidence 9999999876 99999864211 12446788899998876554443 46899999999999999
Q ss_pred ccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc--CCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEec
Q 000755 1207 LKKSKVLVLDEATASVDTATDNLIQQTLRQHF--SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYD 1271 (1300)
Q Consensus 1207 l~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g 1271 (1300)
+++|++|||||||++||+.+.+.+.+.|++.. .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 144 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 144 VRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999999999864 37899999999999987 9999999999998754
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=354.81 Aligned_cols=211 Identities=27% Similarity=0.405 Sum_probs=184.6
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEE
Q 000755 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSI 1134 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~ 1134 (1300)
|+++|++++|+.. .+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+. .++.++|
T Consensus 1 l~~~~l~~~~~~~--~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 76 (232)
T cd03300 1 IELENVSKFYGGF--VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVNT 76 (232)
T ss_pred CEEEeEEEEeCCe--eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceEE
Confidence 4789999999753 59999999999999999999999999999999999999999999999999986654 3678999
Q ss_pred EcCCCCCCcc-cHHHhcCCCC-------CCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHH
Q 000755 1135 IPQDPTMFEG-TVRNNLDPLE-------EYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVL 1206 (1300)
Q Consensus 1135 vpQ~~~lf~g-Tvr~Nl~~~~-------~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARal 1206 (1300)
+||++.+|.+ |+++|+.+.. ...++++.++++.+++.+.....+ .+||+|||||++||||+
T Consensus 77 ~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrl~laral 145 (232)
T cd03300 77 VFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP-----------SQLSGGQQQRVAIARAL 145 (232)
T ss_pred EecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHHH
Confidence 9999999876 9999986321 112345677888888876654443 57899999999999999
Q ss_pred ccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHHhcC
Q 000755 1207 LKKSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENK 1280 (1300)
Q Consensus 1207 l~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~~~~ 1280 (1300)
+++|+++||||||++||+.+.+.+.+.|++..+ ++|||++||+++++.. ||+|++|++|++++.|+++++.+.+
T Consensus 146 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~~ 222 (232)
T cd03300 146 VNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEP 222 (232)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhCC
Confidence 999999999999999999999999999998653 7899999999999877 9999999999999999999988654
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=362.61 Aligned_cols=212 Identities=27% Similarity=0.399 Sum_probs=181.6
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecC--CCCHHHHhccc
Q 000755 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINIS--SIGLHDLRSRL 1132 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~--~i~~~~lr~~i 1132 (1300)
++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++. ..+...+|+++
T Consensus 2 l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i 79 (271)
T PRK13638 2 LATSDLWFRYQD--EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQV 79 (271)
T ss_pred eEEEEEEEEcCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhhe
Confidence 789999999974 35999999999999999999999999999999999999999999999999984 33445678899
Q ss_pred EEEcCCCC--CCcccHHHhcCCC---CCCCH----HHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHH
Q 000755 1133 SIIPQDPT--MFEGTVRNNLDPL---EEYKD----EEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLG 1203 (1300)
Q Consensus 1133 ~~vpQ~~~--lf~gTvr~Nl~~~---~~~~d----~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LA 1203 (1300)
+|+||++. ++..|+.+|+... ..... +++.++++.+++.++.. ....+||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrl~la 148 (271)
T PRK13638 80 ATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRH-----------QPIQCLSHGQKKRVAIA 148 (271)
T ss_pred EEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhc-----------CCchhCCHHHHHHHHHH
Confidence 99999985 5667899998642 11222 33556788887755432 23467999999999999
Q ss_pred HHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHHhc
Q 000755 1204 RVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLEN 1279 (1300)
Q Consensus 1204 Rall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~~~ 1279 (1300)
|||+.+|++|||||||++||+.+...+.+.|++.. +++|||++||+++.+.. ||+|++|++|++++.|+++++.++
T Consensus 149 raL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 149 GALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999999864 47899999999999976 999999999999999999988753
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-39 Score=351.76 Aligned_cols=197 Identities=29% Similarity=0.419 Sum_probs=168.8
Q ss_pred EEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEEE
Q 000755 1056 DILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSII 1135 (1300)
Q Consensus 1056 ~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~v 1135 (1300)
+++|++++|+. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++. .+|++++|+
T Consensus 1 ~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v 73 (213)
T cd03235 1 EVEDLTVSYGG--HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYV 73 (213)
T ss_pred CcccceeEECC--EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEe
Confidence 36799999965 35999999999999999999999999999999999999999999999998764 467889999
Q ss_pred cCCCCC---CcccHHHhcCCCCC-----------CCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHH
Q 000755 1136 PQDPTM---FEGTVRNNLDPLEE-----------YKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVC 1201 (1300)
Q Consensus 1136 pQ~~~l---f~gTvr~Nl~~~~~-----------~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~ 1201 (1300)
||++.+ +..|+++|+..... ..++++.++++.+++.+...+ ...+||||||||++
T Consensus 74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~ 142 (213)
T cd03235 74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADR-----------QIGELSGGQQQRVL 142 (213)
T ss_pred ccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhC-----------CcccCCHHHHHHHH
Confidence 999976 56799999864211 123457788888888655433 23578999999999
Q ss_pred HHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEec
Q 000755 1202 LGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYD 1271 (1300)
Q Consensus 1202 LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g 1271 (1300)
|||||+.+|++|||||||++||+.+.+.+.+.|++.. +++|||++||+++.+.. ||+|++|++| +++.|
T Consensus 143 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 143 LARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999999999999865 57899999999999987 9999999986 55543
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=350.66 Aligned_cols=211 Identities=32% Similarity=0.529 Sum_probs=191.2
Q ss_pred eEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC-------------eE
Q 000755 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-------------TK 682 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g-------------~~ 682 (1300)
.++++|++++|+. .+++++|+||++++|++++|+||||||||||+++|+|+++|++|+|.++| .+
T Consensus 2 ~l~~~~l~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 2 EIEFENVNFSYDE--KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred eEEEEEEEEecCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 4889999999962 24699999999999999999999999999999999999999999999987 27
Q ss_pred EEEecCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHHHHHccCCC
Q 000755 683 AYVAQSPWIQSGNIEDNILFGKP-MDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDAD 761 (1300)
Q Consensus 683 ayv~Q~~~l~~~Ti~eNI~fg~~-~~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLARAly~~~~ 761 (1300)
+|++|+++++.+|++||+.++.+ ...++..+.++.+++.+.++.+|.|.++.++....+||||||||++||||++++|+
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ 159 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998765 34567777888889999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHh
Q 000755 762 IYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILN 829 (1300)
Q Consensus 762 illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 829 (1300)
++||||||++||+.+.+.+.+ .+..+.+++|+|++||+++.++.||+|++|++|++++.|+++++..
T Consensus 160 llllDEP~~~LD~~~~~~l~~-~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 160 ILILDEATSNIDTETEKLIQE-ALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA 226 (229)
T ss_pred EEEEeCccccCCHHHHHHHHH-HHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 999999999999999988865 5555556899999999999988899999999999999999888754
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=357.92 Aligned_cols=212 Identities=20% Similarity=0.357 Sum_probs=181.8
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHH-hccc
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDL-RSRL 1132 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~l-r~~i 1132 (1300)
.++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+..+. |..+
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 82 (255)
T PRK11300 5 LLSVSGLMMRFGG--LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82 (255)
T ss_pred eEEEeeEEEEECC--EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCe
Confidence 5899999999964 369999999999999999999999999999999999999999999999999988776554 4469
Q ss_pred EEEcCCCCCCcc-cHHHhcCCCCC----------------C--C----HHHHHHHHHHcCCcHHHHhhcCCCccccccCC
Q 000755 1133 SIIPQDPTMFEG-TVRNNLDPLEE----------------Y--K----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENG 1189 (1300)
Q Consensus 1133 ~~vpQ~~~lf~g-Tvr~Nl~~~~~----------------~--~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G 1189 (1300)
+|+||++.+|.+ |+++|+..... . . .+.+.++++.+++.+ ......
T Consensus 83 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~ 151 (255)
T PRK11300 83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLE-----------HANRQA 151 (255)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhh-----------hhhCCh
Confidence 999999999886 99999864210 0 0 123444555555543 334455
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhc-cCEEEEEeCCE
Q 000755 1190 ENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGI 1266 (1300)
Q Consensus 1190 ~~LSgGqrQrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~-~D~v~vl~~G~ 1266 (1300)
.+||||||||++||||++.+|++|||||||++||+.+.+.+.+.|++..+ ++|||++||+++.+.+ ||+|++|++|+
T Consensus 152 ~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~ 231 (255)
T PRK11300 152 GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGT 231 (255)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCe
Confidence 78999999999999999999999999999999999999999999988643 6899999999999987 99999999999
Q ss_pred EEEecChhhHHh
Q 000755 1267 IEEYDSPTKLLE 1278 (1300)
Q Consensus 1267 i~e~g~~~~l~~ 1278 (1300)
+++.|+++++.+
T Consensus 232 i~~~~~~~~~~~ 243 (255)
T PRK11300 232 PLANGTPEEIRN 243 (255)
T ss_pred EEecCCHHHHhh
Confidence 999999999875
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=352.56 Aligned_cols=214 Identities=32% Similarity=0.532 Sum_probs=190.5
Q ss_pred EEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC-------------eEE
Q 000755 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-------------TKA 683 (1300)
Q Consensus 617 I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g-------------~~a 683 (1300)
++++|+++.|+...+.++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++| .++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 4689999999643335799999999999999999999999999999999999999999999987 279
Q ss_pred EEecCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCE
Q 000755 684 YVAQSPWIQSGNIEDNILFGKP-MDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADI 762 (1300)
Q Consensus 684 yv~Q~~~l~~~Ti~eNI~fg~~-~~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLARAly~~~~i 762 (1300)
|++|++++++.|++||+.++.+ ...++..+.++.+++.+.++.+|.|.++..+....+||||||||++||||++.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999998999999998754 345566677888888888899999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHhcC
Q 000755 763 YLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSG 831 (1300)
Q Consensus 763 llLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 831 (1300)
+||||||++||+.+.+.+.+ .+....+++|+|++||+++.+..||+|++|++|++++.|+.+++....
T Consensus 161 lllDEP~~gLD~~~~~~l~~-~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~ 228 (238)
T cd03249 161 LLLDEATSALDAESEKLVQE-ALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQK 228 (238)
T ss_pred EEEeCccccCCHHHHHHHHH-HHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhcC
Confidence 99999999999999988865 454444789999999999998889999999999999999988876543
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-38 Score=350.65 Aligned_cols=214 Identities=35% Similarity=0.549 Sum_probs=192.0
Q ss_pred EEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe-------------EE
Q 000755 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------KA 683 (1300)
Q Consensus 617 I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-------------~a 683 (1300)
|+++|++++|+. .+.++++|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|. ++
T Consensus 1 i~~~~l~~~~~~-~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPG-DGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCC-CCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 468999999963 2247999999999999999999999999999999999999999999999872 69
Q ss_pred EEecCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCE
Q 000755 684 YVAQSPWIQSGNIEDNILFGKP-MDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADI 762 (1300)
Q Consensus 684 yv~Q~~~l~~~Ti~eNI~fg~~-~~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLARAly~~~~i 762 (1300)
|++|+++++..|++||+.++.+ ...+++.+.++.+.+.+.++.+|.|.++..+.+..+||||||||++||||++++|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999998754 455667777888889999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHhcCc
Q 000755 763 YLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSGT 832 (1300)
Q Consensus 763 llLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 832 (1300)
+||||||++||+.+...+.+ ++..+.+++|+|++||+++.+..||+|++|++|++++.|+.+++.....
T Consensus 160 llLDEP~~~LD~~~~~~l~~-~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~ 228 (234)
T cd03251 160 LILDEATSALDTESERLVQA-ALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGG 228 (234)
T ss_pred EEEeCccccCCHHHHHHHHH-HHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcCc
Confidence 99999999999999888864 5665557899999999999988899999999999999999988876543
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=362.47 Aligned_cols=213 Identities=26% Similarity=0.399 Sum_probs=183.4
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCC--CCHHHHhccc
Q 000755 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISS--IGLHDLRSRL 1132 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~--i~~~~lr~~i 1132 (1300)
++++|++++|++. +++++|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.. .+...+++++
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 2 LETRDLKYSYPDG-TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred EEEEEEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 7899999999643 359999999999999999999999999999999999999999999999999852 2345678899
Q ss_pred EEEcCCC--CCCcccHHHhcCCCC---CCC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHH
Q 000755 1133 SIIPQDP--TMFEGTVRNNLDPLE---EYK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLG 1203 (1300)
Q Consensus 1133 ~~vpQ~~--~lf~gTvr~Nl~~~~---~~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LA 1203 (1300)
+|+||++ .+|+.|+++|+.... ..+ .+.+.++++.+++.++... ...+||||||||++||
T Consensus 81 ~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LS~Gq~qrv~la 149 (275)
T PRK13639 81 GIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENK-----------PPHHLSGGQKKRVAIA 149 (275)
T ss_pred EEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcC-----------ChhhCCHHHHHHHHHH
Confidence 9999998 467889999995321 122 2346678888888654332 2357999999999999
Q ss_pred HHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC-CcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHHhc
Q 000755 1204 RVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS-DCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLEN 1279 (1300)
Q Consensus 1204 Rall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~-~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~~~ 1279 (1300)
||++.+|++|||||||++||+.+...+.+.|++..+ +.|||++||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 150 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 150 GILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999998653 7899999999999986 999999999999999999998753
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-39 Score=363.97 Aligned_cols=202 Identities=31% Similarity=0.418 Sum_probs=175.7
Q ss_pred eEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe-----------EEE
Q 000755 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KAY 684 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-----------~ay 684 (1300)
.|+++|++.+|... .+++|+||+|++||+++++|||||||||||++|+|+.+|++|+|.++|. +|+
T Consensus 3 ~i~l~~v~K~yg~~---~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iam 79 (338)
T COG3839 3 ELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAM 79 (338)
T ss_pred EEEEeeeEEEcCCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEE
Confidence 58999999999621 2999999999999999999999999999999999999999999999984 699
Q ss_pred EecCCcCCC-CCHHHHHhcCCCCC-------HHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHHHHH
Q 000755 685 VAQSPWIQS-GNIEDNILFGKPMD-------REKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARAL 756 (1300)
Q Consensus 685 v~Q~~~l~~-~Ti~eNI~fg~~~~-------~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLARAl 756 (1300)
|+|+.-++. .||+|||.||.... +++++++.+..+++..++.. ...||||||||||||||+
T Consensus 80 VFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~-----------P~~LSGGQrQRVAlaRAl 148 (338)
T COG3839 80 VFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRK-----------PLQLSGGQRQRVALARAL 148 (338)
T ss_pred EeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcC-----------cccCChhhHHHHHHHHHH
Confidence 999999875 59999999997642 46777788888887777654 468999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHhh-cCCcEEEEEecCCCccc-cCCEEEEEeCCeEEEecChHHHHhcC
Q 000755 757 YQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LRSKTVIYVTHQVEFLP-AADLILVMKDGKITQAGKYNDILNSG 831 (1300)
Q Consensus 757 y~~~~illLDep~saLD~~t~~~i~~~~~~~~-l~~~TvIlvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 831 (1300)
.++|+++|||||+|+||++.+..+..++..-. .-+.|+|+|||+..... .+|+|.+|++|+|.+.|++.|+....
T Consensus 149 Vr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P 225 (338)
T COG3839 149 VRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERP 225 (338)
T ss_pred hcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCc
Confidence 99999999999999999999888765543311 12689999999987755 59999999999999999999998654
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-39 Score=349.82 Aligned_cols=200 Identities=26% Similarity=0.437 Sum_probs=172.4
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEE
Q 000755 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSI 1134 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~ 1134 (1300)
++++|++++|++ .++++|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.. ..|++++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~~ 74 (210)
T cd03269 1 LEVENVTKRFGR--VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIGY 74 (210)
T ss_pred CEEEEEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEEE
Confidence 478999999964 359999999999999999999999999999999999999999999999988753 45778999
Q ss_pred EcCCCCCCcc-cHHHhcCCCC---CCC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHH
Q 000755 1135 IPQDPTMFEG-TVRNNLDPLE---EYK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVL 1206 (1300)
Q Consensus 1135 vpQ~~~lf~g-Tvr~Nl~~~~---~~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARal 1206 (1300)
+||++.+|.+ |+++|+.... ... ++++.++++.+++.+.... ...+||||||||++||||+
T Consensus 75 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~la~al 143 (210)
T cd03269 75 LPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANK-----------RVEELSKGNQQKVQFIAAV 143 (210)
T ss_pred eccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhC-----------cHhhCCHHHHHHHHHHHHH
Confidence 9999998875 9999985421 111 3345667777777554332 3467899999999999999
Q ss_pred ccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEec
Q 000755 1207 LKKSKVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYD 1271 (1300)
Q Consensus 1207 l~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g 1271 (1300)
+.+|+++||||||++||+.+.+.+.+.|++.. +++|||++||+++.+.. ||++++|++|++++.|
T Consensus 144 ~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 144 IHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999999998864 46899999999999977 9999999999998764
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=350.98 Aligned_cols=207 Identities=27% Similarity=0.388 Sum_probs=172.6
Q ss_pred EEEEeeeeeeCCCC--CcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCH---HHHh
Q 000755 1055 VDILNLQVRYAPHL--PLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGL---HDLR 1129 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~--~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~---~~lr 1129 (1300)
|+++||+++|+... +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 78999999996531 259999999999999999999999999999999999999999999999999987663 5678
Q ss_pred cccEEEcCCC--CCC-cccHHHhcCCC----C-CCCHHHH----HHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHH
Q 000755 1130 SRLSIIPQDP--TMF-EGTVRNNLDPL----E-EYKDEEI----WEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQR 1197 (1300)
Q Consensus 1130 ~~i~~vpQ~~--~lf-~gTvr~Nl~~~----~-~~~d~~i----~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqr 1197 (1300)
++++|+||++ .++ ..|+++|+... . ...++.. .++++..++.+ ........+||||||
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~ 151 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPE----------EVLNRYPHELSGGQR 151 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCCh----------hHhhCCchhcCHHHH
Confidence 8999999999 344 46999998521 1 1111111 24566666531 122344567999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhc-cCEEEEEeCCEEEEec
Q 000755 1198 QLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGIIEEYD 1271 (1300)
Q Consensus 1198 Qrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g 1271 (1300)
||++|||||+.+|++|||||||++||+.+.+.+.+.|++..+ ++|||++||+++.+.. ||+|++|++|++++.|
T Consensus 152 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 152 QRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999999999999998753 7899999999999986 9999999999998764
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-38 Score=354.71 Aligned_cols=216 Identities=28% Similarity=0.409 Sum_probs=194.9
Q ss_pred cceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC-------------
Q 000755 614 ETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG------------- 680 (1300)
Q Consensus 614 ~~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g------------- 680 (1300)
.+.|+++|++++|+. ...++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 17 ~~~i~~~~l~~~~~~-~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 17 GGEIKIHDLCVRYEN-NLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CceEEEEEEEEEeCC-CCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 457999999999963 235799999999999999999999999999999999999999999999977
Q ss_pred eEEEEecCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHHHHHccCC
Q 000755 681 TKAYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDA 760 (1300)
Q Consensus 681 ~~ayv~Q~~~l~~~Ti~eNI~fg~~~~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLARAly~~~ 760 (1300)
.++|++|+|+++++|++||+........+++..+++..++.+.++.+|.|+++.+++.+.+||||||||++||||++++|
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 175 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKS 175 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 26999999999999999999876545566778888888999999999999999999999999999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHhcC
Q 000755 761 DIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSG 831 (1300)
Q Consensus 761 ~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 831 (1300)
++++|||||++||+++...+++ ++....+++|+|++||+++.+..||+|++|++|++++.|+++++....
T Consensus 176 ~llllDEPt~gLD~~~~~~l~~-~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~ 245 (257)
T cd03288 176 SILIMDEATASIDMATENILQK-VVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQE 245 (257)
T ss_pred CEEEEeCCccCCCHHHHHHHHH-HHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhcc
Confidence 9999999999999999877754 555555689999999999999889999999999999999999887643
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=350.69 Aligned_cols=200 Identities=33% Similarity=0.503 Sum_probs=173.5
Q ss_pred eEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC-------------eE
Q 000755 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-------------TK 682 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g-------------~~ 682 (1300)
.++++|++|+|+ ++++++|+||++++|++++|+|||||||||||++|+|.++|.+|+|.++| .+
T Consensus 2 ~L~~~~ls~~y~---~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYG---GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEEC---CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 478999999997 47899999999999999999999999999999999999999999999999 47
Q ss_pred EEEecCCcC-CCCCHHHHHhcCCC-----------CCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHH
Q 000755 683 AYVAQSPWI-QSGNIEDNILFGKP-----------MDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRI 750 (1300)
Q Consensus 683 ayv~Q~~~l-~~~Ti~eNI~fg~~-----------~~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRi 750 (1300)
|||||++.. +.-||+|-+.+|+- .|++...++++.+++.+.. .+.-..||||||||+
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la-----------~r~~~~LSGGerQrv 147 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLA-----------DRPVDELSGGERQRV 147 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHh-----------cCcccccChhHHHHH
Confidence 999999754 67799999999962 1334566678888776544 234567999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhh--cCCcEEEEEecCCCc-cccCCEEEEEeCCeEEEecChHHH
Q 000755 751 QIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL--LRSKTVIYVTHQVEF-LPAADLILVMKDGKITQAGKYNDI 827 (1300)
Q Consensus 751 aLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~--l~~~TvIlvtH~~~~-l~~~d~i~~l~~G~i~~~g~~~~l 827 (1300)
.|||||.++|+|++||||||+||....-++++. +..+ .+++|+|+|+|+++. +..||++++|++|+++..|+++|.
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~l-l~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~ev 226 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLEL-LRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEV 226 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchh
Confidence 999999999999999999999999999988864 4443 347999999999987 556999999999999999999988
Q ss_pred Hhc
Q 000755 828 LNS 830 (1300)
Q Consensus 828 ~~~ 830 (1300)
+..
T Consensus 227 lT~ 229 (258)
T COG1120 227 LTE 229 (258)
T ss_pred cCH
Confidence 753
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=356.35 Aligned_cols=222 Identities=26% Similarity=0.411 Sum_probs=187.6
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCC--C---CcceEEECCeecCC--CCHH
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVE--P---TAGEIVIDGINISS--IGLH 1126 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~--p---~~G~I~idg~di~~--i~~~ 1126 (1300)
.|+++|++++|+. +++|+|+||+|++||++||+|+||||||||+++|+|+++ | ++|+|.+||.++.. .+..
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14255 5 IITSSDVHLFYGK--FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVV 82 (252)
T ss_pred eEEEEeEEEEECC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHH
Confidence 5899999999975 359999999999999999999999999999999999975 5 59999999999864 2345
Q ss_pred HHhcccEEEcCCCCCCcccHHHhcCCC---CCC-C----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHH
Q 000755 1127 DLRSRLSIIPQDPTMFEGTVRNNLDPL---EEY-K----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQ 1198 (1300)
Q Consensus 1127 ~lr~~i~~vpQ~~~lf~gTvr~Nl~~~---~~~-~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQ 1198 (1300)
.++++++|+||++.+|..|+++|+... ... . ++++.++++.+++.+.+. ........+||+||||
T Consensus 83 ~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~Gq~q 155 (252)
T PRK14255 83 QLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVK-------DHLHESALSLSGGQQQ 155 (252)
T ss_pred HhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchh-------hHHhcCcccCCHHHHH
Confidence 677889999999999989999998632 111 1 234566777777653322 2234456789999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHH
Q 000755 1199 LVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLL 1277 (1300)
Q Consensus 1199 rl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~ 1277 (1300)
|++||||++++|++|||||||++||+.+.+.+.+.|++..+++|||+|||+++.+.. ||+|++|++|++++.|++.++.
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 156 RVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999987667899999999999987 9999999999999999999998
Q ss_pred hcCCChH
Q 000755 1278 ENKSSSF 1284 (1300)
Q Consensus 1278 ~~~~~~f 1284 (1300)
.++...+
T Consensus 236 ~~~~~~~ 242 (252)
T PRK14255 236 LNPKEKE 242 (252)
T ss_pred cCCCChH
Confidence 7655443
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-38 Score=350.47 Aligned_cols=208 Identities=22% Similarity=0.340 Sum_probs=182.0
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEE
Q 000755 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSI 1134 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~ 1134 (1300)
++++||+++|+.. ..|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+. .+++++|
T Consensus 2 l~~~~l~~~~~~~----~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 75 (232)
T PRK10771 2 LKLTDITWLYHHL----PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVSM 75 (232)
T ss_pred eEEEEEEEEECCc----cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEEE
Confidence 7899999999742 249999999999999999999999999999999999999999999999876543 2568999
Q ss_pred EcCCCCCCcc-cHHHhcCCCC--C-----CCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHH
Q 000755 1135 IPQDPTMFEG-TVRNNLDPLE--E-----YKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVL 1206 (1300)
Q Consensus 1135 vpQ~~~lf~g-Tvr~Nl~~~~--~-----~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARal 1206 (1300)
+||++.+|.+ |+++|+.... . ..++++.++++.+++.+.+.+.+ ..||||||||++||||+
T Consensus 76 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral 144 (232)
T PRK10771 76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----------GQLSGGQRQRVALARCL 144 (232)
T ss_pred EecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc-----------ccCCHHHHHHHHHHHHH
Confidence 9999999986 9999996421 1 12345788899999876655544 36899999999999999
Q ss_pred ccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHHhc
Q 000755 1207 LKKSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLEN 1279 (1300)
Q Consensus 1207 l~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~~~ 1279 (1300)
+++|+++||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.++
T Consensus 145 ~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 145 VREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999998643 7899999999999877 999999999999999999999864
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=367.56 Aligned_cols=203 Identities=25% Similarity=0.395 Sum_probs=176.4
Q ss_pred eeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEEEcCCCCCC
Q 000755 1063 RYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDPTMF 1142 (1300)
Q Consensus 1063 ~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~vpQ~~~lf 1142 (1300)
+|+. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|++++|+||++.+|
T Consensus 2 ~y~~--~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~ 78 (302)
T TIGR01188 2 VYGD--FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVD 78 (302)
T ss_pred eeCC--eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCC
Confidence 4643 359999999999999999999999999999999999999999999999999875 3456788999999999998
Q ss_pred cc-cHHHhcCCCC---CCC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEE
Q 000755 1143 EG-TVRNNLDPLE---EYK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLV 1214 (1300)
Q Consensus 1143 ~g-Tvr~Nl~~~~---~~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~~iLl 1214 (1300)
.. |+++|+.+.. ..+ ++++.++++.+++.+...+ ...+||||||||++|||||+++|++||
T Consensus 79 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~la~al~~~p~lll 147 (302)
T TIGR01188 79 EDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADR-----------PVGTYSGGMRRRLDIAASLIHQPDVLF 147 (302)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCC-----------chhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 76 9999986421 112 2356778888888654322 235789999999999999999999999
Q ss_pred EeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHHhc
Q 000755 1215 LDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLEN 1279 (1300)
Q Consensus 1215 LDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~~~ 1279 (1300)
|||||++||+.+.+.+.+.|++.. +++|||++||+++.+.. ||+|++|++|++++.|+++++.++
T Consensus 148 LDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 148 LDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 999999999999999999999864 46899999999999987 999999999999999999998753
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=367.60 Aligned_cols=226 Identities=21% Similarity=0.332 Sum_probs=188.0
Q ss_pred eEEEEeeeeeeCC--CCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCC----CCcceEEECCeecCCCCHHH
Q 000755 1054 EVDILNLQVRYAP--HLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVE----PTAGEIVIDGINISSIGLHD 1127 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~--~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~----p~~G~I~idg~di~~i~~~~ 1127 (1300)
.++++|++++|.. +...+|+||||+|++||++||+|+||||||||+++|+|+.+ |++|+|.+||+++..++.++
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 4899999999953 22359999999999999999999999999999999999996 58999999999998887766
Q ss_pred Hh----cccEEEcCCCC--CCc-ccHHHhcCC----C---CC------CCHHHHHHHHHHcCCcHHHHhhcCCCcccccc
Q 000755 1128 LR----SRLSIIPQDPT--MFE-GTVRNNLDP----L---EE------YKDEEIWEALDKCQLGDEVRNKEGKLDSRVTE 1187 (1300)
Q Consensus 1128 lr----~~i~~vpQ~~~--lf~-gTvr~Nl~~----~---~~------~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e 1187 (1300)
++ ++|+||||+|. +++ .||.+|+.. . .. ..++++.++|+++++.+.-.. ...
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~--------~~~ 154 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDA--------MRS 154 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHH--------HhC
Confidence 53 47999999996 333 488888741 0 10 012457788999998642110 122
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhc-cCEEEEEeC
Q 000755 1188 NGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVID-SDMVLLLSH 1264 (1300)
Q Consensus 1188 ~G~~LSgGqrQrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~-~D~v~vl~~ 1264 (1300)
....||||||||++|||||+.+|+||||||||++||+.+...+.+.|++..+ +.|+|+|||+++.+.. ||||++|++
T Consensus 155 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~ 234 (330)
T PRK15093 155 FPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYC 234 (330)
T ss_pred CchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 3457899999999999999999999999999999999999999999998653 7899999999999987 999999999
Q ss_pred CEEEEecChhhHHhcCCChHHHH
Q 000755 1265 GIIEEYDSPTKLLENKSSSFAQL 1287 (1300)
Q Consensus 1265 G~i~e~g~~~~l~~~~~~~f~~l 1287 (1300)
|+|+|.|+++++++++...|.+.
T Consensus 235 G~ive~g~~~~i~~~p~~~y~~~ 257 (330)
T PRK15093 235 GQTVETAPSKELVTTPHHPYTQA 257 (330)
T ss_pred CEEEEECCHHHHHhCCCCHHHHH
Confidence 99999999999988766666553
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=351.25 Aligned_cols=209 Identities=25% Similarity=0.349 Sum_probs=180.4
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccE
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLS 1133 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~ 1133 (1300)
.|+++|+++.|++ .++++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...++++++
T Consensus 7 ~i~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 7 LLQLQNVGYLAGD--AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred eEEEeccEEeeCC--ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 5999999999964 35999999999999999999999999999999999999999999999999998888877888999
Q ss_pred EEcCCCCCCcccHHHhcCCC----CC-CCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHcc
Q 000755 1134 IIPQDPTMFEGTVRNNLDPL----EE-YKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLK 1208 (1300)
Q Consensus 1134 ~vpQ~~~lf~gTvr~Nl~~~----~~-~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~ 1208 (1300)
|+||++.+|+.|+++|+... .. ..++++.++++.+++.+. .....+.+||+|||||++|||||++
T Consensus 85 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LS~G~~qrv~laral~~ 154 (225)
T PRK10247 85 YCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDT----------ILTKNIAELSGGEKQRISLIRNLQF 154 (225)
T ss_pred EEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChH----------HhcCCcccCCHHHHHHHHHHHHHhc
Confidence 99999999988999998632 11 123456677888877532 1233456899999999999999999
Q ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhccCEEEEEe-CCEEEEecChh
Q 000755 1209 KSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVIDSDMVLLLS-HGIIEEYDSPT 1274 (1300)
Q Consensus 1209 ~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~~D~v~vl~-~G~i~e~g~~~ 1274 (1300)
+|+++||||||++||+.+.+.+.+.|++..+ ++|||++||+++.+..||+|++|+ ++..+++|+++
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 155 MPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 9999999999999999999999999998643 789999999999998899999995 55666667764
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=357.59 Aligned_cols=211 Identities=25% Similarity=0.375 Sum_probs=184.5
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEE
Q 000755 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSI 1134 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~ 1134 (1300)
++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+|++++|
T Consensus 2 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (256)
T TIGR03873 2 LRLSRVSWSAGG--RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVAL 79 (256)
T ss_pred ceEEeEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEE
Confidence 689999999965 359999999999999999999999999999999999999999999999999988888788888999
Q ss_pred EcCCCCC-CcccHHHhcCCCC----C-------CCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHH
Q 000755 1135 IPQDPTM-FEGTVRNNLDPLE----E-------YKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCL 1202 (1300)
Q Consensus 1135 vpQ~~~l-f~gTvr~Nl~~~~----~-------~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~L 1202 (1300)
+||++.+ +..|+++|+.... . ..++++.++++.+++.+.... ....||+|||||++|
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~l 148 (256)
T TIGR03873 80 VEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADR-----------DMSTLSGGERQRVHV 148 (256)
T ss_pred ecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcC-----------CcccCCHHHHHHHHH
Confidence 9999864 4579999985421 0 112356778888887544322 345799999999999
Q ss_pred HHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC-CcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHHh
Q 000755 1203 GRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS-DCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLE 1278 (1300)
Q Consensus 1203 ARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~-~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~~ 1278 (1300)
|||++.+|+++||||||++||+.+...+.+.|++..+ +.|||++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 149 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 149 ARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 9999999999999999999999999999999998653 6899999999999976 99999999999999999998864
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-38 Score=362.75 Aligned_cols=221 Identities=28% Similarity=0.496 Sum_probs=189.3
Q ss_pred CCceEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCC-----CCcceEEECCeecCCC--
Q 000755 1051 THGEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVE-----PTAGEIVIDGINISSI-- 1123 (1300)
Q Consensus 1051 ~~g~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~-----p~~G~I~idg~di~~i-- 1123 (1300)
....|+++|++++|++ .++|+++||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++...
T Consensus 42 ~~~~l~i~nl~~~~~~--~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~ 119 (305)
T PRK14264 42 GDAKLSVEDLDVYYGD--DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGV 119 (305)
T ss_pred CCceEEEEEEEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 3457999999999975 359999999999999999999999999999999999986 6899999999998653
Q ss_pred CHHHHhcccEEEcCCCCCCcccHHHhcCCCCC--------------------CCHHHHHHHHHHcCCcHHHHhhcCCCcc
Q 000755 1124 GLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEE--------------------YKDEEIWEALDKCQLGDEVRNKEGKLDS 1183 (1300)
Q Consensus 1124 ~~~~lr~~i~~vpQ~~~lf~gTvr~Nl~~~~~--------------------~~d~~i~~~l~~~~l~~~i~~~~~gLdt 1183 (1300)
+...+|++++|+||++.+|++|+++|+..... ..++++.++++.+++.+.+. .
T Consensus 120 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~ 192 (305)
T PRK14264 120 NLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVN-------D 192 (305)
T ss_pred cHHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhh-------H
Confidence 35567889999999999998999999863210 11344677788887754332 2
Q ss_pred ccccCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhc-cCEE-EE
Q 000755 1184 RVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVID-SDMV-LL 1261 (1300)
Q Consensus 1184 ~v~e~G~~LSgGqrQrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~-~D~v-~v 1261 (1300)
.....+.+||||||||++|||||+++|+||||||||++||+.+...+.+.|++..++.|||++||+++.+.. ||+| ++
T Consensus 193 ~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~ 272 (305)
T PRK14264 193 RLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVF 272 (305)
T ss_pred HhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEE
Confidence 345566889999999999999999999999999999999999999999999988767899999999999987 9997 57
Q ss_pred EeCCEEEEecChhhHHhcC
Q 000755 1262 LSHGIIEEYDSPTKLLENK 1280 (1300)
Q Consensus 1262 l~~G~i~e~g~~~~l~~~~ 1280 (1300)
|++|++++.|+++++.+.+
T Consensus 273 l~~G~i~~~g~~~~~~~~~ 291 (305)
T PRK14264 273 LTGGELVEYDDTDKIFENP 291 (305)
T ss_pred ecCCEEEEeCCHHHHHhCc
Confidence 8999999999999998653
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-38 Score=347.46 Aligned_cols=206 Identities=30% Similarity=0.432 Sum_probs=188.3
Q ss_pred eEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC-------------eE
Q 000755 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-------------TK 682 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g-------------~~ 682 (1300)
.++++|++++|+.. ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++| .+
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 2 DIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred cEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 48899999999632 35799999999999999999999999999999999999999999999887 26
Q ss_pred EEEecCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCE
Q 000755 683 AYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADI 762 (1300)
Q Consensus 683 ayv~Q~~~l~~~Ti~eNI~fg~~~~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLARAly~~~~i 762 (1300)
+|++|++.++..|++|||.+......++..++++..++.+.+..+|.|+++..++.+.+||||||||++||||++.+|++
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 160 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI 160 (221)
T ss_pred EEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999988766777788888999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecC
Q 000755 763 YLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGK 823 (1300)
Q Consensus 763 llLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~~d~i~~l~~G~i~~~g~ 823 (1300)
+||||||++||+.++..+.+ .+..+.+++|+|++||+++.+..||++++|++|++++.|+
T Consensus 161 lllDEP~~~LD~~~~~~l~~-~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 161 LVLDEATASVDPETDALIQK-TIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred EEEeCccccCCHHHHHHHHH-HHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 99999999999999888765 5555556789999999999998899999999999998765
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=348.01 Aligned_cols=203 Identities=28% Similarity=0.382 Sum_probs=174.5
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHH---Hhcc
Q 000755 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHD---LRSR 1131 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~---lr~~ 1131 (1300)
|+++|++++|+++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++..++... +|++
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 2 IRFEHVSKAYLGG-RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred EEEEeeEEEecCC-CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 7899999999432 46999999999999999999999999999999999999999999999999998766443 6788
Q ss_pred cEEEcCCCCCC-cccHHHhcCCC---CCCCH----HHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHH
Q 000755 1132 LSIIPQDPTMF-EGTVRNNLDPL---EEYKD----EEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLG 1203 (1300)
Q Consensus 1132 i~~vpQ~~~lf-~gTvr~Nl~~~---~~~~d----~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LA 1203 (1300)
++|+||++.+| ..|+++|+... ...++ +++.++++..++.+...+ ...+||+|||||++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la 149 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKN-----------FPIQLSGGEQQRVGIA 149 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhC-----------CchhCCHHHHHHHHHH
Confidence 99999999875 56999999642 12222 235677888887654433 3357899999999999
Q ss_pred HHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhc-cCEEEEEeCCEEEE
Q 000755 1204 RVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGIIEE 1269 (1300)
Q Consensus 1204 Rall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e 1269 (1300)
||++++|++|||||||++||+.+.+.+.+.|++.. ++.|+|++||+++.+.. ||+|++|++|+++.
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 150 RAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 99999999999999999999999999999999864 46899999999999987 99999999999864
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=351.78 Aligned_cols=211 Identities=26% Similarity=0.419 Sum_probs=183.5
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEE
Q 000755 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSI 1134 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~ 1134 (1300)
|+++|++++|++. ++|+|+||++.+||++||+|+||||||||+++|+|+++|++|+|.+||.++...+. .++.++|
T Consensus 1 i~i~~l~~~~~~~--~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~~ 76 (237)
T TIGR00968 1 IEIANISKRFGSF--QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIGF 76 (237)
T ss_pred CEEEEEEEEECCe--eeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEEE
Confidence 4789999999753 59999999999999999999999999999999999999999999999999876542 4678999
Q ss_pred EcCCCCCCcc-cHHHhcCCCC---CC----CHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHH
Q 000755 1135 IPQDPTMFEG-TVRNNLDPLE---EY----KDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVL 1206 (1300)
Q Consensus 1135 vpQ~~~lf~g-Tvr~Nl~~~~---~~----~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARal 1206 (1300)
+||++.+|++ |+++|+.... .. .++++.+++++.++.+...+. ..+||+||+||++||||+
T Consensus 77 ~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~lS~G~~qrl~laral 145 (237)
T TIGR00968 77 VFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRY-----------PNQLSGGQRQRVALARAL 145 (237)
T ss_pred EecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCC-----------hhhCCHHHHHHHHHHHHH
Confidence 9999999976 9999996421 11 134567788888876544332 357899999999999999
Q ss_pred ccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHHhcC
Q 000755 1207 LKKSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENK 1280 (1300)
Q Consensus 1207 l~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~~~~ 1280 (1300)
+++|++++|||||++||+.+.+.+.+.|++..+ ++|||++||+++.+.. ||+|++|++|++++.|+++++.+.+
T Consensus 146 ~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~~ 222 (237)
T TIGR00968 146 AVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDHP 222 (237)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcCC
Confidence 999999999999999999999999999998643 6899999999999877 9999999999999999999998543
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=371.91 Aligned_cols=213 Identities=19% Similarity=0.282 Sum_probs=180.2
Q ss_pred eeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCe----ecCCCCHHHH---h-cc
Q 000755 1060 LQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGI----NISSIGLHDL---R-SR 1131 (1300)
Q Consensus 1060 v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~----di~~i~~~~l---r-~~ 1131 (1300)
+..+|+. ..+|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|++||. ++...+.+.+ | ++
T Consensus 30 ~~~~~g~--~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~ 107 (382)
T TIGR03415 30 ILDETGL--VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHR 107 (382)
T ss_pred HHHhhCC--EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCC
Confidence 4445543 35899999999999999999999999999999999999999999999996 6666665544 3 57
Q ss_pred cEEEcCCCCCCc-ccHHHhcCCCC---CCC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHH
Q 000755 1132 LSIIPQDPTMFE-GTVRNNLDPLE---EYK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLG 1203 (1300)
Q Consensus 1132 i~~vpQ~~~lf~-gTvr~Nl~~~~---~~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LA 1203 (1300)
++|+||++.+|+ .|+++|+.+.. ... .+.+.++++.+++.++....+ .+||||||||++||
T Consensus 108 i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~-----------~~LSgGq~QRV~LA 176 (382)
T TIGR03415 108 VSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKP-----------GELSGGMQQRVGLA 176 (382)
T ss_pred EEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHH
Confidence 999999999997 59999986421 122 234677899998876644433 46899999999999
Q ss_pred HHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHHhcC
Q 000755 1204 RVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENK 1280 (1300)
Q Consensus 1204 Rall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~~~~ 1280 (1300)
|||+++|+||||||||++||+.+...+++.|++..+ ++|+|+|||+++++.. ||||++|++|++++.|++++++.++
T Consensus 177 RALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p 256 (382)
T TIGR03415 177 RAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNP 256 (382)
T ss_pred HHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCc
Confidence 999999999999999999999999999999988653 7899999999999876 9999999999999999999998765
Q ss_pred CChHH
Q 000755 1281 SSSFA 1285 (1300)
Q Consensus 1281 ~~~f~ 1285 (1300)
...|.
T Consensus 257 ~~~~~ 261 (382)
T TIGR03415 257 ANDYV 261 (382)
T ss_pred chHHH
Confidence 54443
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-38 Score=349.81 Aligned_cols=215 Identities=33% Similarity=0.553 Sum_probs=191.9
Q ss_pred EEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe-------------EE
Q 000755 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------KA 683 (1300)
Q Consensus 617 I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-------------~a 683 (1300)
++++|++++|+. ..++++|+||+|++|++++|+|+||||||||+++|+|+.+|++|+|.++|. ++
T Consensus 1 l~~~~l~~~~~~--~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDP--GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCC--CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 468999999952 256999999999999999999999999999999999999999999999872 69
Q ss_pred EEecCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCE
Q 000755 684 YVAQSPWIQSGNIEDNILFGKP-MDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADI 762 (1300)
Q Consensus 684 yv~Q~~~l~~~Ti~eNI~fg~~-~~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLARAly~~~~i 762 (1300)
|++|++++++.|++||+.++.+ ...+.....++.+++.+.++.+|.|.++.++.+..+||||||||++|||||+++|++
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l 158 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158 (236)
T ss_pred EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999998754 345556777888899888999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHhcCchH
Q 000755 763 YLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSGTDF 834 (1300)
Q Consensus 763 llLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 834 (1300)
+||||||++||+++...+.+ ++....+++|+|++||+++.+..||++++|++|++++.|+.+++......+
T Consensus 159 lllDEP~~~LD~~~~~~l~~-~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~~~~~ 229 (236)
T cd03253 159 LLLDEATSALDTHTEREIQA-ALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLY 229 (236)
T ss_pred EEEeCCcccCCHHHHHHHHH-HHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhcccHH
Confidence 99999999999999888865 455554588999999999999889999999999999999988887654433
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=351.89 Aligned_cols=210 Identities=24% Similarity=0.407 Sum_probs=183.4
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEE
Q 000755 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSI 1134 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~ 1134 (1300)
|+++|++++|+. + +|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|.++...+. .+++++|
T Consensus 1 l~~~~l~~~~~~--~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~~ 75 (235)
T cd03299 1 LKVENLSKDWKE--F-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDISY 75 (235)
T ss_pred CeeEeEEEEeCC--c-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEEE
Confidence 468999999974 2 7999999999999999999999999999999999999999999999999876554 3678999
Q ss_pred EcCCCCCCc-ccHHHhcCCC---CCC----CHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHH
Q 000755 1135 IPQDPTMFE-GTVRNNLDPL---EEY----KDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVL 1206 (1300)
Q Consensus 1135 vpQ~~~lf~-gTvr~Nl~~~---~~~----~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARal 1206 (1300)
+||++.+|. .|+++|+... ... .++++.++++.+++.+.+.+.+ .+||+|||||++||||+
T Consensus 76 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~laral 144 (235)
T cd03299 76 VPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKP-----------ETLSGGEQQRVAIARAL 144 (235)
T ss_pred EeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCc-----------ccCCHHHHHHHHHHHHH
Confidence 999999885 5999999632 111 2345677888888876554433 56899999999999999
Q ss_pred ccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHHhcC
Q 000755 1207 LKKSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENK 1280 (1300)
Q Consensus 1207 l~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~~~~ 1280 (1300)
+++|++++|||||++||+.+.+.+.+.|++... ++|+|++||+++.+.+ ||+|++|++|++++.|+++++.+.+
T Consensus 145 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 221 (235)
T cd03299 145 VVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKP 221 (235)
T ss_pred HcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhCc
Confidence 999999999999999999999999999998643 7899999999999987 9999999999999999999988654
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=348.70 Aligned_cols=200 Identities=28% Similarity=0.465 Sum_probs=171.7
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCC--CCHHHHhccc
Q 000755 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISS--IGLHDLRSRL 1132 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~--i~~~~lr~~i 1132 (1300)
++++|++++|+. .++|+++||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ......|+++
T Consensus 1 l~~~~l~~~~~~--~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (213)
T cd03262 1 IEIKNLHKSFGD--FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKV 78 (213)
T ss_pred CEEEEEEEEECC--eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcc
Confidence 478999999975 359999999999999999999999999999999999999999999999999853 3445678899
Q ss_pred EEEcCCCCCCc-ccHHHhcCCC----CCCC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHH
Q 000755 1133 SIIPQDPTMFE-GTVRNNLDPL----EEYK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLG 1203 (1300)
Q Consensus 1133 ~~vpQ~~~lf~-gTvr~Nl~~~----~~~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LA 1203 (1300)
+|+||++.+|. .|+++|+... .... ++++.++++.+++.+...+ ...+||||||||++||
T Consensus 79 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la 147 (213)
T cd03262 79 GMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADA-----------YPAQLSGGQQQRVAIA 147 (213)
T ss_pred eEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhh-----------CccccCHHHHHHHHHH
Confidence 99999999886 5999998642 1222 2345667777777554333 3367899999999999
Q ss_pred HHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhc-cCEEEEEeCCEE
Q 000755 1204 RVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGII 1267 (1300)
Q Consensus 1204 Rall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i 1267 (1300)
||++++|++|||||||++||+.+.+.+.+.|++.. .++|||++||+++.+.+ ||+|++|++|++
T Consensus 148 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 148 RALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999865 36899999999999987 999999999975
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-38 Score=353.08 Aligned_cols=224 Identities=22% Similarity=0.325 Sum_probs=185.8
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCC----CcceEEECCeecCCCCHHHHh
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEP----TAGEIVIDGINISSIGLHDLR 1129 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p----~~G~I~idg~di~~i~~~~lr 1129 (1300)
.++++|++++| + .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++... +..+
T Consensus 4 ~l~~~~l~~~~-~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~~ 78 (254)
T PRK10418 4 QIELRNIALQA-A--QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALRG 78 (254)
T ss_pred EEEEeCeEEEe-c--cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--cccc
Confidence 58999999999 3 3599999999999999999999999999999999999999 999999999998632 2234
Q ss_pred cccEEEcCCCC-CCc--ccHHHhcCC----C-CCCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHH
Q 000755 1130 SRLSIIPQDPT-MFE--GTVRNNLDP----L-EEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVC 1201 (1300)
Q Consensus 1130 ~~i~~vpQ~~~-lf~--gTvr~Nl~~----~-~~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~ 1201 (1300)
+.++|+||++. .|. .|+.+|+.. . ....+++++++++.+++.+. ++.+......||+|||||++
T Consensus 79 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~qrv~ 150 (254)
T PRK10418 79 RKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGMLQRMM 150 (254)
T ss_pred ceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHHHHHH
Confidence 67999999985 343 377777531 1 12234668888999888542 11234455789999999999
Q ss_pred HHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHHh
Q 000755 1202 LGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLE 1278 (1300)
Q Consensus 1202 LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~~ 1278 (1300)
|||||+++|++|||||||++||+.+.+.+.+.|++..+ ++|||++||+++.+.+ ||+|++|++|++++.|+++++.+
T Consensus 151 laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 230 (254)
T PRK10418 151 IALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFN 230 (254)
T ss_pred HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence 99999999999999999999999999999999998643 6899999999999976 99999999999999999999987
Q ss_pred cCCC-hHHHHHHH
Q 000755 1279 NKSS-SFAQLVAE 1290 (1300)
Q Consensus 1279 ~~~~-~f~~l~~~ 1290 (1300)
++.. .++.++..
T Consensus 231 ~~~~~~~~~~~~~ 243 (254)
T PRK10418 231 APKHAVTRSLVSA 243 (254)
T ss_pred CCCCHHHHHHHHh
Confidence 6544 45545543
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-38 Score=353.47 Aligned_cols=226 Identities=26% Similarity=0.405 Sum_probs=189.7
Q ss_pred ceEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECC------eecCCCCHH
Q 000755 1053 GEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDG------INISSIGLH 1126 (1300)
Q Consensus 1053 g~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg------~di~~i~~~ 1126 (1300)
..++++|++++|++ +++|+|+||++++||++||+|+||||||||+++|+|+++|++|+|.++| .++...+..
T Consensus 9 ~~i~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 9 DVFNISRLYLYIND--KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred hheeeeeEEEecCC--ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 46999999999975 3599999999999999999999999999999999999999997666655 666666777
Q ss_pred HHhcccEEEcCCCCCCcc-cHHHhcCCC----CCCCH----HHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHH
Q 000755 1127 DLRSRLSIIPQDPTMFEG-TVRNNLDPL----EEYKD----EEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQR 1197 (1300)
Q Consensus 1127 ~lr~~i~~vpQ~~~lf~g-Tvr~Nl~~~----~~~~d----~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqr 1197 (1300)
.+|++++|+||++.+|.+ |+++|+... ....+ +.+.++++.+++.+.+.. .....+..||+|||
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~LS~G~~ 159 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYD-------RLNSPASQLSGGQQ 159 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchh-------hhcCCcccCCHHHH
Confidence 788999999999999876 999999632 11122 234667777777543311 12335678999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhH
Q 000755 1198 QLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKL 1276 (1300)
Q Consensus 1198 Qrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l 1276 (1300)
||++||||++++|++++|||||++||+.+...+.+.|++..+++|||++||+++.+.. ||++++|++|++++.|+++++
T Consensus 160 qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~ 239 (257)
T PRK14246 160 QRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239 (257)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999987667999999999999976 999999999999999999999
Q ss_pred HhcCCChHHHH
Q 000755 1277 LENKSSSFAQL 1287 (1300)
Q Consensus 1277 ~~~~~~~f~~l 1287 (1300)
.+++...+.+.
T Consensus 240 ~~~~~~~~~~~ 250 (257)
T PRK14246 240 FTSPKNELTEK 250 (257)
T ss_pred HhCCCcHHHHH
Confidence 87665445443
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=365.15 Aligned_cols=203 Identities=33% Similarity=0.454 Sum_probs=178.3
Q ss_pred ceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe-----------EE
Q 000755 615 TAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KA 683 (1300)
Q Consensus 615 ~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-----------~a 683 (1300)
..++++|++.+|. +..+++|+||+|++||++++.|||||||||||++|+|+..|++|+|.++|. ++
T Consensus 4 ~~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig 80 (352)
T COG3842 4 PALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIG 80 (352)
T ss_pred ceEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccc
Confidence 4699999999996 468999999999999999999999999999999999999999999999995 59
Q ss_pred EEecCCcCC-CCCHHHHHhcCCC----CC-H---HHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHHH
Q 000755 684 YVAQSPWIQ-SGNIEDNILFGKP----MD-R---EKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIAR 754 (1300)
Q Consensus 684 yv~Q~~~l~-~~Ti~eNI~fg~~----~~-~---~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLAR 754 (1300)
+|+|+.-|| +.||+|||.||.. .. + +++.++++..+|....+ .+...|||||+|||||||
T Consensus 81 ~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~-----------R~p~qLSGGQqQRVALAR 149 (352)
T COG3842 81 MVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFAD-----------RKPHQLSGGQQQRVALAR 149 (352)
T ss_pred eeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhh-----------hChhhhChHHHHHHHHHH
Confidence 999999998 5699999999976 12 2 36777787777776443 455789999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhh-cCCcEEEEEecCCCc-cccCCEEEEEeCCeEEEecChHHHHhcC
Q 000755 755 ALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LRSKTVIYVTHQVEF-LPAADLILVMKDGKITQAGKYNDILNSG 831 (1300)
Q Consensus 755 Aly~~~~illLDep~saLD~~t~~~i~~~~~~~~-l~~~TvIlvtH~~~~-l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 831 (1300)
||..+|+++|||||+||||.+.+.++-.++.... ..|.|.|+|||+.+. +..+|||.+|++|+|.+.|+++|+....
T Consensus 150 AL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P 228 (352)
T COG3842 150 ALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228 (352)
T ss_pred HhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence 9999999999999999999999998876654322 238999999999976 6779999999999999999999998764
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-38 Score=333.65 Aligned_cols=206 Identities=29% Similarity=0.436 Sum_probs=179.3
Q ss_pred cceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe------------
Q 000755 614 ETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------ 681 (1300)
Q Consensus 614 ~~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~------------ 681 (1300)
+..|++++++++|. ++.+++|+||+|++||.++|+|+|||||||||++|+|+++|++|+|.+.|.
T Consensus 6 ~~~I~vr~v~~~fG---~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ 82 (263)
T COG1127 6 EPLIEVRGVTKSFG---DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYE 82 (263)
T ss_pred cceEEEeeeeeecC---CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHH
Confidence 35799999999995 578999999999999999999999999999999999999999999999883
Q ss_pred ----EEEEecCCcCCCC-CHHHHHhcCC----CCCHHHHHH----HHHHhcchHH-HhhccCCCcccccCCCCCCCHHHH
Q 000755 682 ----KAYVAQSPWIQSG-NIEDNILFGK----PMDREKYDR----VLEACSLKKD-LEILSFGDQTVIGERGINLSGGQK 747 (1300)
Q Consensus 682 ----~ayv~Q~~~l~~~-Ti~eNI~fg~----~~~~~~~~~----vl~~~~l~~d-l~~l~~Gd~t~ige~g~~LSGGQk 747 (1300)
+|+++|+--+|+. ||.||+.|-. ..+++.+++ -+++++|..+ .+.+| ..||||.+
T Consensus 83 ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sELSGGM~ 151 (263)
T COG1127 83 IRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SELSGGMR 151 (263)
T ss_pred HHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hhhcchHH
Confidence 5999999999975 9999999942 244544443 4678888887 66666 57999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcC--CcEEEEEecCCCcccc-CCEEEEEeCCeEEEecCh
Q 000755 748 QRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLR--SKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKY 824 (1300)
Q Consensus 748 qRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~--~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 824 (1300)
.|++||||+..||+|+++|||||+|||.++..+ .+++..+.. +-|+|+|||+++.+.. ||+|+++.||+|++.|++
T Consensus 152 KRvaLARAialdPell~~DEPtsGLDPI~a~~~-~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~ 230 (263)
T COG1127 152 KRVALARAIALDPELLFLDEPTSGLDPISAGVI-DELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTP 230 (263)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCcchHHHH-HHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCH
Confidence 999999999999999999999999999996654 677765533 7899999999998765 899999999999999999
Q ss_pred HHHHhcCchH
Q 000755 825 NDILNSGTDF 834 (1300)
Q Consensus 825 ~~l~~~~~~~ 834 (1300)
+|+.+....+
T Consensus 231 ~el~~sd~P~ 240 (263)
T COG1127 231 EELLASDDPW 240 (263)
T ss_pred HHHHhCCCHH
Confidence 9998865543
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-38 Score=353.98 Aligned_cols=222 Identities=21% Similarity=0.357 Sum_probs=183.8
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCee-----cCCCCHHH-
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGIN-----ISSIGLHD- 1127 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~d-----i~~i~~~~- 1127 (1300)
.++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.+ +.+.+...
T Consensus 6 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~ 83 (258)
T PRK11701 6 LLSVRGLTKLYGP--RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAER 83 (258)
T ss_pred eEEEeeeEEEcCC--ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHH
Confidence 5899999999975 359999999999999999999999999999999999999999999999998 77766554
Q ss_pred ---HhcccEEEcCCCC--CCc-ccHHHhcCC----CCCCC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCC
Q 000755 1128 ---LRSRLSIIPQDPT--MFE-GTVRNNLDP----LEEYK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWS 1193 (1300)
Q Consensus 1128 ---lr~~i~~vpQ~~~--lf~-gTvr~Nl~~----~~~~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LS 1193 (1300)
.++.++|+||++. ++. .|+.+|+.. ..... .+++.++++.+++.+ +.....+.+||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS 153 (258)
T PRK11701 84 RRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDA----------ARIDDLPTTFS 153 (258)
T ss_pred HHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCCh----------hHHhCCCccCC
Confidence 3557999999984 333 478888632 11111 233455666666532 12345567899
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhc-cCEEEEEeCCEEEEe
Q 000755 1194 MGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGIIEEY 1270 (1300)
Q Consensus 1194 gGqrQrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~ 1270 (1300)
||||||++|||||+++|++|||||||++||+.+.+.+.+.|++..+ +.|||+|||+++.+.. ||+|++|++|++++.
T Consensus 154 ~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~ 233 (258)
T PRK11701 154 GGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVES 233 (258)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999987643 7899999999999986 999999999999999
Q ss_pred cChhhHHhcCCChHHHH
Q 000755 1271 DSPTKLLENKSSSFAQL 1287 (1300)
Q Consensus 1271 g~~~~l~~~~~~~f~~l 1287 (1300)
|+++++..++...|.+.
T Consensus 234 ~~~~~~~~~~~~~~~~~ 250 (258)
T PRK11701 234 GLTDQVLDDPQHPYTQL 250 (258)
T ss_pred CCHHHHhcCCCCHHHHH
Confidence 99999987655445443
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-38 Score=345.35 Aligned_cols=201 Identities=23% Similarity=0.387 Sum_probs=175.0
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEE
Q 000755 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSI 1134 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~ 1134 (1300)
++++|++++|+. .++|+||++++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+ ..|++++|
T Consensus 1 ~~~~~l~~~~~~----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~~ 74 (213)
T TIGR01277 1 LALDKVRYEYEH----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSM 74 (213)
T ss_pred CeEEeeeEEeCC----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceEE
Confidence 368999999963 468999999999999999999999999999999999999999999999987543 46778999
Q ss_pred EcCCCCCCcc-cHHHhcCCC-C-C-----CCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHH
Q 000755 1135 IPQDPTMFEG-TVRNNLDPL-E-E-----YKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVL 1206 (1300)
Q Consensus 1135 vpQ~~~lf~g-Tvr~Nl~~~-~-~-----~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARal 1206 (1300)
+||+|.+|.+ |+++|+... . . ..++++.++++.+++.+...+.+ .+||+|||||++||||+
T Consensus 75 v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~laral 143 (213)
T TIGR01277 75 LFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP-----------EQLSGGQRQRVALARCL 143 (213)
T ss_pred EeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCc-----------ccCCHHHHHHHHHHHHH
Confidence 9999999875 999998531 1 1 12346777899998876554443 46899999999999999
Q ss_pred ccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecC
Q 000755 1207 LKKSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGIIEEYDS 1272 (1300)
Q Consensus 1207 l~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~ 1272 (1300)
+++|+++||||||++||+.+.+.+.+.|++..+ ++|||++||+++.+.+ ||+|++|++|++++.|+
T Consensus 144 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 144 VRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 999999999999999999999999999998653 6899999999999876 99999999999998874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-38 Score=369.04 Aligned_cols=212 Identities=22% Similarity=0.377 Sum_probs=184.8
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCC----CHHHHhc
Q 000755 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSI----GLHDLRS 1130 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i----~~~~lr~ 1130 (1300)
|++ |++++|+.. .+ |+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... .....++
T Consensus 2 l~~-~l~k~~~~~---~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 76 (352)
T PRK11144 2 LEL-NFKQQLGDL---CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR 76 (352)
T ss_pred eEE-EEEEEeCCE---EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhC
Confidence 567 899999753 23 89999999999999999999999999999999999999999999998643 2345678
Q ss_pred ccEEEcCCCCCCcc-cHHHhcCCC-CCCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHcc
Q 000755 1131 RLSIIPQDPTMFEG-TVRNNLDPL-EEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLK 1208 (1300)
Q Consensus 1131 ~i~~vpQ~~~lf~g-Tvr~Nl~~~-~~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~ 1208 (1300)
+++|+||++.+|+. |+++|+.+. ....++++.++++.+++.+...+.+ .+||||||||++|||||++
T Consensus 77 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~LSgGq~qRvalaraL~~ 145 (352)
T PRK11144 77 RIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYP-----------GSLSGGEKQRVAIGRALLT 145 (352)
T ss_pred CEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCc-----------ccCCHHHHHHHHHHHHHHc
Confidence 89999999999865 999999753 2334567888999998876554443 5789999999999999999
Q ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHHhcCCC
Q 000755 1209 KSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENKSS 1282 (1300)
Q Consensus 1209 ~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~~~~~~ 1282 (1300)
+|++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+|+++..++..
T Consensus 146 ~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p~~ 222 (352)
T PRK11144 146 APELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSAM 222 (352)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCcch
Confidence 9999999999999999999999999988653 6899999999999987 999999999999999999999987653
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=352.71 Aligned_cols=211 Identities=22% Similarity=0.277 Sum_probs=177.4
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCC--CCCcceEEECCeecCCCCHHHH-hcc
Q 000755 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIV--EPTAGEIVIDGINISSIGLHDL-RSR 1131 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~--~p~~G~I~idg~di~~i~~~~l-r~~ 1131 (1300)
|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+. +|++|+|.+||.++...+.... +..
T Consensus 1 l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR01978 1 LKIKDLHVSVED--KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAG 78 (243)
T ss_pred CeEeeEEEEECC--EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccc
Confidence 478999999974 35999999999999999999999999999999999995 7999999999999988776554 455
Q ss_pred cEEEcCCCCCCcc-cHHHhcCCC----CC------CC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCC-CCChh
Q 000755 1132 LSIIPQDPTMFEG-TVRNNLDPL----EE------YK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGE-NWSMG 1195 (1300)
Q Consensus 1132 i~~vpQ~~~lf~g-Tvr~Nl~~~----~~------~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~-~LSgG 1195 (1300)
++|+||++.+|.+ |+++|+... .. .+ ++.+.++++.+++.+.. ++ .... .||||
T Consensus 79 i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~----~~~~~~LS~G 148 (243)
T TIGR01978 79 LFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEF------LN----RSVNEGFSGG 148 (243)
T ss_pred eEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhh------cc----cccccCcCHH
Confidence 9999999998876 899987431 10 11 23456677777775321 11 1222 49999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhc--cCEEEEEeCCEEEEecC
Q 000755 1196 QRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVID--SDMVLLLSHGIIEEYDS 1272 (1300)
Q Consensus 1196 qrQrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~--~D~v~vl~~G~i~e~g~ 1272 (1300)
||||++|||||+.+|++|||||||++||+.+.+.+.+.|++.. +++|||++||+++.+.. ||+|++|++|++++.|+
T Consensus 149 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~ 228 (243)
T TIGR01978 149 EKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGD 228 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecC
Confidence 9999999999999999999999999999999999999999875 36899999999999986 79999999999999999
Q ss_pred hhhHH
Q 000755 1273 PTKLL 1277 (1300)
Q Consensus 1273 ~~~l~ 1277 (1300)
++++.
T Consensus 229 ~~~~~ 233 (243)
T TIGR01978 229 VELAK 233 (243)
T ss_pred HHHhc
Confidence 88654
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=347.07 Aligned_cols=201 Identities=32% Similarity=0.465 Sum_probs=173.7
Q ss_pred eEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe--------------
Q 000755 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 681 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-------------- 681 (1300)
.|.+++++..|+ ..++++|||++|+.||.+|+.|||||||||||++|+|+..|++|.|.++|.
T Consensus 2 ~i~i~~~~~~~~---~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~ 78 (345)
T COG1118 2 SIRINNVKKRFG---AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRK 78 (345)
T ss_pred ceeehhhhhhcc---cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcc
Confidence 367788888886 457899999999999999999999999999999999999999999999985
Q ss_pred EEEEecCCcCC-CCCHHHHHhcCCCC---------CHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHH
Q 000755 682 KAYVAQSPWIQ-SGNIEDNILFGKPM---------DREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQ 751 (1300)
Q Consensus 682 ~ayv~Q~~~l~-~~Ti~eNI~fg~~~---------~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRia 751 (1300)
||||+|+.-+| ..||.|||.||.+. .+.+..+.++.|.|+.--+.. ...||||||||||
T Consensus 79 VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ry-----------P~QLSGGQrQRVA 147 (345)
T COG1118 79 VGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRY-----------PAQLSGGQRQRVA 147 (345)
T ss_pred eeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcC-----------chhcChHHHHHHH
Confidence 69999999887 57999999999732 245667778888887554443 4689999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc-C-CcEEEEEecCCCcc-ccCCEEEEEeCCeEEEecChHHHH
Q 000755 752 IARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-R-SKTVIYVTHQVEFL-PAADLILVMKDGKITQAGKYNDIL 828 (1300)
Q Consensus 752 LARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l-~-~~TvIlvtH~~~~l-~~~d~i~~l~~G~i~~~g~~~~l~ 828 (1300)
|||||...|++|||||||+|||++.++.+- .++.... + +.|+++|||+.++. ..||+|++|++|+|.+.|+++|+.
T Consensus 148 LARALA~eP~vLLLDEPf~ALDa~vr~~lr-~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~ 226 (345)
T COG1118 148 LARALAVEPKVLLLDEPFGALDAKVRKELR-RWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVY 226 (345)
T ss_pred HHHHhhcCCCeEeecCCchhhhHHHHHHHH-HHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHh
Confidence 999999999999999999999999988874 4554433 2 78999999999875 569999999999999999999987
Q ss_pred hcC
Q 000755 829 NSG 831 (1300)
Q Consensus 829 ~~~ 831 (1300)
...
T Consensus 227 ~~P 229 (345)
T COG1118 227 DHP 229 (345)
T ss_pred cCC
Confidence 653
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=326.53 Aligned_cols=506 Identities=17% Similarity=0.141 Sum_probs=332.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 000755 291 TKALFFSAWKEIVFTAILALLYTLANYVGPYLIDTFVQYLNGEREFKNEGYVLVSTFFVAK-IVECLAQRHWMFRLQVAG 369 (1300)
Q Consensus 291 ~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~g~~l~~~l~~~~-~~~~l~~~~~~~~~~~~g 369 (1300)
.-.++|.+++.++....+.+...+. +..++-.+-+++.+..........+.+++++.. +.+.+++.- ...+|
T Consensus 4 ll~llr~nr~~~i~~~a~s~a~g~~---g~~lLa~in~al~e~~~~~~~~l~~f~~llllf~~ss~is~lg----~t~~g 76 (546)
T COG4615 4 LLLLLRQNRWPFISVMALSLASGAL---GIGLLAFINQALIETADTSLLVLPEFLGLLLLFMVSSLISQLG----LTTLG 76 (546)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhcccceeeHHHHHHHHHHHHHHHHHHHHH----HHHHH
Confidence 3456788888877666665554433 333443333444322211100111111111111 112222222 23344
Q ss_pred HHHHHHHHHHHHHHHhcCCchhhcCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000755 370 IKMRSVLVSMVYNKGLTLSCQAKQSYTSGEIINFMTVDAERIGDFGWYMHDPWLVILQVSLALLILYKNLGLASIAALFA 449 (1300)
Q Consensus 370 ~~ir~~L~~~Iy~K~L~ls~~~~~~~~~G~Ivnl~s~Dv~~i~~~~~~~~~~~~~~l~i~~~l~lL~~~lg~~~l~~l~~ 449 (1300)
..+-..++..+-+|.+.-+....++.+++.++..++.|+..|.-.+..+.......+.+..+...|++.-+..++..++.
T Consensus 77 q~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~ISf~~s~lp~~~qa~il~l~s~aYLayLSp~mf~l~vV~ 156 (546)
T COG4615 77 QHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFAFSRLPELVQAIILTLGSAAYLAYLSPKMFLLTVVW 156 (546)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhcccccceeehHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 45555556667788888888888889999999999999999985555555555444444444555555555555666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHH--HHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 000755 450 TVLIMLTNFPLGRLQENFQDKLMGSKDKRMKVTSEILRNMRILKLQGWEM--KFLSKII-ELRKIEAGWLKKFLYTGAMT 526 (1300)
Q Consensus 450 ~~l~~~~~~~~~k~~~~~~~~~~~~~d~r~~~~~E~L~~ir~IK~~~~E~--~f~~~i~-~~R~~E~~~l~~~~~~~~~~ 526 (1300)
+++.+..++....+..+...+..+..|+-.+..+.++.|-|.+|++.--. .+.+.+. ..++.+..... .....+
T Consensus 157 ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~~r~~~~~---~n~f~~ 233 (546)
T COG4615 157 IVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRHHIIR---ANTFHL 233 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchHHHHhhhhh---hhHHHH
Confidence 66666677777777777777888889999999999999999999886322 2222221 12222221111 011111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc
Q 000755 527 SFVFWGAPTFVSVATFGACMLLGIPL-ESGKILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIASFLCLDDLQSDVV 605 (1300)
Q Consensus 527 ~~~~~~~p~~v~~~~f~~~~~~~~~L-t~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~ 605 (1300)
....|....+.+++....|+...-.. +...+.++...+-.+..|+.+....+..+.+|.++++||.++-..|+..+-..
T Consensus 234 la~~~~ni~l~~lIGlvf~lal~~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a~~~~ 313 (546)
T COG4615 234 LAVNWSNIMLLGLIGLVFWLALSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKADFPR 313 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCccccCCC
Confidence 23344444444444333232222112 22244555556667899999999999999999999999999866544322111
Q ss_pred cCCCCCCCcceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCeE---
Q 000755 606 EKHPRGSSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK--- 682 (1300)
Q Consensus 606 ~~~~~~~~~~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~~--- 682 (1300)
+ .+. +.-..++++|+.|+|++. ..-+.-||++|++||++-|+|.||||||||++++.|++.|++|+|.+||+.
T Consensus 314 ~-q~~-p~~~~lelrnvrfay~~~--~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~ 389 (546)
T COG4615 314 P-QAF-PDWKTLELRNVRFAYQDN--AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSA 389 (546)
T ss_pred C-CcC-CcccceeeeeeeeccCcc--cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCC
Confidence 1 111 123479999999999843 377889999999999999999999999999999999999999999999963
Q ss_pred ----------EEEecCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHH
Q 000755 683 ----------AYVAQSPWIQSGNIEDNILFGKP-MDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQ 751 (1300)
Q Consensus 683 ----------ayv~Q~~~l~~~Ti~eNI~fg~~-~~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRia 751 (1300)
+-|+-|.|+|+.++. ++. .+++..++-++.-.+....+ +.+|--+ -..||-|||.|+|
T Consensus 390 e~ledYR~LfSavFsDyhLF~~ll~-----~e~~as~q~i~~~LqrLel~~kts-l~d~~fs-----~~kLStGQkKRlA 458 (546)
T COG4615 390 EQLEDYRKLFSAVFSDYHLFDQLLG-----PEGKASPQLIEKWLQRLELAHKTS-LNDGRFS-----NLKLSTGQKKRLA 458 (546)
T ss_pred CCHHHHHHHHHHHhhhHhhhHhhhC-----CccCCChHHHHHHHHHHHHhhhhc-ccCCccc-----ccccccchHHHHH
Confidence 345556666654331 122 34555555555544443332 2222211 2469999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhh-cCCcEEEEEecCCCccccCCEEEEEeCCeEEEe
Q 000755 752 IARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LRSKTVIYVTHQVEFLPAADLILVMKDGKITQA 821 (1300)
Q Consensus 752 LARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~-l~~~TvIlvtH~~~~l~~~d~i~~l~~G~i~~~ 821 (1300)
+--|++.+.|||+|||=-+-=||+-++..++..+-.+ ..|||++.|||+-.+...|||++.|++|++++.
T Consensus 459 ll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 459 LLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 529 (546)
T ss_pred HHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceeec
Confidence 9999999999999999999999999998888766433 359999999999999999999999999999865
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-38 Score=353.47 Aligned_cols=221 Identities=21% Similarity=0.317 Sum_probs=185.6
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCC---cceEEECCeecCCCC-----H
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPT---AGEIVIDGINISSIG-----L 1125 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~---~G~I~idg~di~~i~-----~ 1125 (1300)
.++++||+++|+. .++|+|+||++++||+++|+|+||||||||+++|+|+++|+ +|+|.+||.++...+ .
T Consensus 4 ~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (262)
T PRK09984 4 IIRVEKLAKTFNQ--HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDI 81 (262)
T ss_pred EEEEeeEEEEeCC--eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhH
Confidence 5899999999974 35999999999999999999999999999999999999986 499999999986532 3
Q ss_pred HHHhcccEEEcCCCCCCcc-cHHHhcCCCC---------------CCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCC
Q 000755 1126 HDLRSRLSIIPQDPTMFEG-TVRNNLDPLE---------------EYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENG 1189 (1300)
Q Consensus 1126 ~~lr~~i~~vpQ~~~lf~g-Tvr~Nl~~~~---------------~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G 1189 (1300)
..+|++++|+||++.+|.+ |+++|+.... ....+++.++++.+++.+...+ ..
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~ 150 (262)
T PRK09984 82 RKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQ-----------RV 150 (262)
T ss_pred HHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhC-----------Cc
Confidence 4567889999999998875 9999985321 0112356778888877554332 34
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc--CCcEEEEEeCChhhhhc-cCEEEEEeCCE
Q 000755 1190 ENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF--SDCTVITIAHRITSVID-SDMVLLLSHGI 1266 (1300)
Q Consensus 1190 ~~LSgGqrQrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~ 1266 (1300)
..||+|||||++||||++.+|++|||||||++||+.+.+.+.+.|++.. .+.|||++||+++.+.. ||+|++|++|+
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~ 230 (262)
T PRK09984 151 STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGH 230 (262)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 5789999999999999999999999999999999999999999999865 36899999999999876 99999999999
Q ss_pred EEEecChhhHHhcCCChHHHHHHH
Q 000755 1267 IEEYDSPTKLLENKSSSFAQLVAE 1290 (1300)
Q Consensus 1267 i~e~g~~~~l~~~~~~~f~~l~~~ 1290 (1300)
+++.|+++++ + .....+++.+
T Consensus 231 i~~~g~~~~~-~--~~~~~~~~~~ 251 (262)
T PRK09984 231 VFYDGSSQQF-D--NERFDHLYRS 251 (262)
T ss_pred EEEeCCHHHh-c--cHHHHHHHhh
Confidence 9999999986 2 2345555543
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=347.49 Aligned_cols=445 Identities=18% Similarity=0.188 Sum_probs=317.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhcCCCH--H---HHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHH
Q 000755 361 WMFRLQVAGIKMRSVLVSMVYNKGLTLSCQAKQSYTS--G---EIINFMTVDAERIGDFGW-YMHDPWLVILQVSLALLI 434 (1300)
Q Consensus 361 ~~~~~~~~g~~ir~~L~~~Iy~K~L~ls~~~~~~~~~--G---~Ivnl~s~Dv~~i~~~~~-~~~~~~~~~l~i~~~l~l 434 (1300)
..|..+++..+.|.-|...+.+|-+.-...++..... + ..=.++..|+..+.+... ....+....++++....+
T Consensus 106 ~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~~i 185 (604)
T COG4178 106 QTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTGI 185 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788999999999999999999876444322221 1 234688999888776533 233444455555556666
Q ss_pred HHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHH
Q 000755 435 LYKNLG---------------LASIAALFATVLIMLTNFPLGRLQENFQDKLMGSKDKRMKVTSEILRNMRILKLQGWEM 499 (1300)
Q Consensus 435 L~~~lg---------------~~~l~~l~~~~l~~~~~~~~~k~~~~~~~~~~~~~d~r~~~~~E~L~~ir~IK~~~~E~ 499 (1300)
||...| ....+.++-.+....+...++|...+...+..+.....-.....+.++-..|-+|+-|+
T Consensus 186 Lw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~GE~ 265 (604)
T COG4178 186 LWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAIALYRGEK 265 (604)
T ss_pred HHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHhhHHHHHHhcCcH
Confidence 663333 11112222222222333344555444443333443444445556889999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHH
Q 000755 500 KFLSKIIELRKIEAGWLKK-F---LYTGAMTSFVFWGAPTFVSVATFGACMLLGIPLESGKILSALATFRILQEPIYNLP 575 (1300)
Q Consensus 500 ~f~~~i~~~R~~E~~~l~~-~---~~~~~~~~~~~~~~p~~v~~~~f~~~~~~~~~Lt~g~vft~lal~~~l~~pl~~lp 575 (1300)
...+++.+.-..=++..++ . .....+.....+.+++ +. ....+-.++.+.++.|.+..+...|+.+...+.-+-
T Consensus 266 ~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v-~P-~li~ap~~f~g~i~~G~lmqa~~aF~~v~sslswfi 343 (604)
T COG4178 266 VERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVV-LP-ILIAAPRYFSGQITFGGLMQAVGAFGQVHSSLSWFI 343 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHH-HH-HHhccHhhhcCcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777765432111111111 1 1111112222222221 11 111222356788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCC--CCcccccCCCC------CCCcceEEEEeEEEEecCCCCCCceecceeEEeCCcE
Q 000755 576 DTISMIIQTKVSLDRIASFLCLDD--LQSDVVEKHPR------GSSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMR 647 (1300)
Q Consensus 576 ~~i~~~~~a~vs~~RI~~fL~~~e--~~~~~~~~~~~------~~~~~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~ 647 (1300)
+.+..+.+-++++.|+.+|...-+ ..++.....+. ...+..|+++|++..-|. ..+.+++.||++++|+.
T Consensus 344 ~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~--~~~ll~~l~~~v~~G~~ 421 (604)
T COG4178 344 DNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPD--GQTLLSELNFEVRPGER 421 (604)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCC--CCeeeccceeeeCCCCE
Confidence 999999999999999999985322 00100000000 111468999999999764 34899999999999999
Q ss_pred EEEEcCCCCChHHHHHHHhccccCCccEEEEcC--eEEEEecCCcCCCCCHHHHHhcCCC---CCHHHHHHHHHHhcchH
Q 000755 648 VAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--TKAYVAQSPWIQSGNIEDNILFGKP---MDREKYDRVLEACSLKK 722 (1300)
Q Consensus 648 ~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g--~~ayv~Q~~~l~~~Ti~eNI~fg~~---~~~~~~~~vl~~~~l~~ 722 (1300)
+.|.|+||||||||+++|.|..|--+|+|.... .+-|+||.|++..||.||-|++.+. ++++++.+++..|+|.+
T Consensus 422 llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~ 501 (604)
T COG4178 422 LLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGD 501 (604)
T ss_pred EEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHH
Confidence 999999999999999999999999999998873 3799999999999999999999764 67899999999999999
Q ss_pred HHhhccCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCC
Q 000755 723 DLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVE 802 (1300)
Q Consensus 723 dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~ 802 (1300)
-.+.+..-+ .-...||||||||+++||.++++|++++|||.|||||++++..+++ .+++.+.+.|+|-|.||..
T Consensus 502 L~~rl~~~~-----~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q-~l~~~lp~~tvISV~Hr~t 575 (604)
T COG4178 502 LAERLDEED-----RWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQ-LLKEELPDATVISVGHRPT 575 (604)
T ss_pred HHHHHhccC-----cHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHH-HHHhhCCCCEEEEeccchh
Confidence 988875433 2456799999999999999999999999999999999999999986 5677788999999999999
Q ss_pred ccccCCEEEEEeC
Q 000755 803 FLPAADLILVMKD 815 (1300)
Q Consensus 803 ~l~~~d~i~~l~~ 815 (1300)
.....++.+.+.+
T Consensus 576 l~~~h~~~l~l~~ 588 (604)
T COG4178 576 LWNFHSRQLELLD 588 (604)
T ss_pred hHHHHhhheeecc
Confidence 8877777666643
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=354.19 Aligned_cols=211 Identities=26% Similarity=0.364 Sum_probs=183.6
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCC--------cceEEECCeecCCCCHH
Q 000755 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPT--------AGEIVIDGINISSIGLH 1126 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~--------~G~I~idg~di~~i~~~ 1126 (1300)
++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|+ +|+|.+||.++...+..
T Consensus 2 l~~~nl~~~~~~~--~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~ 79 (272)
T PRK13547 2 LTADHLHVARRHR--AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAP 79 (272)
T ss_pred eEEEEEEEEECCE--eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHH
Confidence 7899999999653 5999999999999999999999999999999999999998 99999999999887777
Q ss_pred HHhcccEEEcCCCC-CCcccHHHhcCCCC--C------C---CHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCCh
Q 000755 1127 DLRSRLSIIPQDPT-MFEGTVRNNLDPLE--E------Y---KDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSM 1194 (1300)
Q Consensus 1127 ~lr~~i~~vpQ~~~-lf~gTvr~Nl~~~~--~------~---~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSg 1194 (1300)
.+++.++|+||++. +|..|+++|+.... . . .++.++++++.+++.+. .......|||
T Consensus 80 ~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSg 148 (272)
T PRK13547 80 RLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATAL-----------VGRDVTTLSG 148 (272)
T ss_pred HHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhh-----------hcCCcccCCH
Confidence 88888999999986 56789999985421 0 1 12346677777776543 3344568999
Q ss_pred hHHHHHHHHHHHc---------cCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhc-cCEEEEE
Q 000755 1195 GQRQLVCLGRVLL---------KKSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVID-SDMVLLL 1262 (1300)
Q Consensus 1195 GqrQrl~LARall---------~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~-~D~v~vl 1262 (1300)
|||||++|||||+ .+|++|||||||++||+.+.+.+.+.|++..+ ++|||+|||+++.+.. ||++++|
T Consensus 149 G~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l 228 (272)
T PRK13547 149 GELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAML 228 (272)
T ss_pred HHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence 9999999999999 59999999999999999999999999998653 6899999999999976 9999999
Q ss_pred eCCEEEEecChhhHHh
Q 000755 1263 SHGIIEEYDSPTKLLE 1278 (1300)
Q Consensus 1263 ~~G~i~e~g~~~~l~~ 1278 (1300)
++|++++.|+++++++
T Consensus 229 ~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 229 ADGAIVAHGAPADVLT 244 (272)
T ss_pred ECCeEEEecCHHHHcC
Confidence 9999999999999875
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=330.76 Aligned_cols=206 Identities=30% Similarity=0.440 Sum_probs=180.6
Q ss_pred ceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCc-----cEEEEcCe--------
Q 000755 615 TAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKIS-----GTLKLCGT-------- 681 (1300)
Q Consensus 615 ~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~-----G~i~~~g~-------- 681 (1300)
..++++|+++.|. ++.+|+|||++|++++++|++|||||||||||+++.+..+... |+|.++|.
T Consensus 6 ~~~~~~~l~~yYg---~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 6 PAIEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred ceeEecceeEEEC---chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 4689999999996 4679999999999999999999999999999999999887765 99998883
Q ss_pred -------EEEEecCCcCCCCCHHHHHhcCCCC---C----HHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHH
Q 000755 682 -------KAYVAQSPWIQSGNIEDNILFGKPM---D----REKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQK 747 (1300)
Q Consensus 682 -------~ayv~Q~~~l~~~Ti~eNI~fg~~~---~----~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQk 747 (1300)
+|+|+|.|--|..||.|||.||... . ++..++.++.++|.+.... .+.+.+..|||||+
T Consensus 83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQ 155 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQ 155 (253)
T ss_pred HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHH
Confidence 5999999999999999999999542 1 3456777888888766542 34567888999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHH
Q 000755 748 QRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYND 826 (1300)
Q Consensus 748 qRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 826 (1300)
||++|||||.-+|+|+|||||||||||.+..+| ++++..+.++-|+|+|||+++-... +|+...+-+|+++|.|+.++
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kI-EeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~ 234 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKI-EELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDK 234 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHH-HHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHh
Confidence 999999999999999999999999999998888 6788877778899999999987655 89999999999999999999
Q ss_pred HHhcC
Q 000755 827 ILNSG 831 (1300)
Q Consensus 827 l~~~~ 831 (1300)
+..+.
T Consensus 235 iF~~P 239 (253)
T COG1117 235 IFTNP 239 (253)
T ss_pred hhcCc
Confidence 87654
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=342.54 Aligned_cols=205 Identities=38% Similarity=0.555 Sum_probs=184.0
Q ss_pred eEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC-------------eE
Q 000755 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-------------TK 682 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g-------------~~ 682 (1300)
.++++|+++.|+. ...++++|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.++| .+
T Consensus 2 ~l~~~~l~~~~~~-~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 2 RIEFRNVSFSYPN-QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred eEEEEEEEEEcCC-CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 4889999999963 235799999999999999999999999999999999999999999999987 26
Q ss_pred EEEecCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHHHHHccCCC
Q 000755 683 AYVAQSPWIQSGNIEDNILFGKP-MDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDAD 761 (1300)
Q Consensus 683 ayv~Q~~~l~~~Ti~eNI~fg~~-~~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLARAly~~~~ 761 (1300)
+|++|+++++..|+.||+.++.+ .++++..+.++.+++.+.++..|.|.+|.+.+...+||||||||++||||+..+|+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999988999999998754 35567778888999998899999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEec
Q 000755 762 IYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAG 822 (1300)
Q Consensus 762 illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~~d~i~~l~~G~i~~~g 822 (1300)
++||||||++||+.+...+++ .+..+.+++|+|++||+++++..||+|++|++|++++.|
T Consensus 161 llllDEPt~~LD~~~~~~l~~-~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKE-RLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEEeCccccCCHHHHHHHHH-HHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 999999999999999888865 455554558999999999988779999999999998654
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=343.14 Aligned_cols=204 Identities=27% Similarity=0.443 Sum_probs=178.2
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEE
Q 000755 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSI 1134 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~ 1134 (1300)
++++|++++|+. .++|+|+||++++||++||+|+||||||||+++|+|+++|++|+|.++|.++... . ++.++|
T Consensus 1 l~l~~v~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~---~-~~~~~~ 74 (223)
T TIGR03740 1 LETKNLSKRFGK--QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRK---D-LHKIGS 74 (223)
T ss_pred CEEEeEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccc---c-cccEEE
Confidence 478999999975 3599999999999999999999999999999999999999999999999987532 2 347999
Q ss_pred EcCCCCCCc-ccHHHhcCCC---CCCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCC
Q 000755 1135 IPQDPTMFE-GTVRNNLDPL---EEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKS 1210 (1300)
Q Consensus 1135 vpQ~~~lf~-gTvr~Nl~~~---~~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~ 1210 (1300)
+||++.+|. .|+++|+... ....++++.++++.+++.+..... ..+||+|||||++||||++++|
T Consensus 75 ~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~~rv~laral~~~p 143 (223)
T TIGR03740 75 LIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKK-----------AKQFSLGMKQRLGIAIALLNHP 143 (223)
T ss_pred EcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhh-----------HhhCCHHHHHHHHHHHHHhcCC
Confidence 999998886 5999998532 233466788899999887654433 3568999999999999999999
Q ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhh
Q 000755 1211 KVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTK 1275 (1300)
Q Consensus 1211 ~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~ 1275 (1300)
++|+|||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|++.+
T Consensus 144 ~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 144 KLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred CEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 9999999999999999999999999864 36899999999999976 99999999999999998764
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-38 Score=331.03 Aligned_cols=171 Identities=41% Similarity=0.719 Sum_probs=160.6
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEE
Q 000755 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSI 1134 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~ 1134 (1300)
++++|++++|++..+.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|++++|
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 47899999997643469999999999999999999999999999999999999999999999999988887788889999
Q ss_pred EcCCCCCCcccHHHhcCCCCCCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEE
Q 000755 1135 IPQDPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLV 1214 (1300)
Q Consensus 1135 vpQ~~~lf~gTvr~Nl~~~~~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~~iLl 1214 (1300)
+||++.+|+.|+.+|+ ||+|||||++||||++++|++||
T Consensus 81 ~~~~~~~~~~t~~e~l-----------------------------------------LS~G~~~rl~la~al~~~p~lll 119 (171)
T cd03228 81 VPQDPFLFSGTIRENI-----------------------------------------LSGGQRQRIAIARALLRDPPILI 119 (171)
T ss_pred EcCCchhccchHHHHh-----------------------------------------hCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999997 79999999999999999999999
Q ss_pred EeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhccCEEEEEeCCE
Q 000755 1215 LDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGI 1266 (1300)
Q Consensus 1215 LDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~~D~v~vl~~G~ 1266 (1300)
|||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||++++|++|+
T Consensus 120 lDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 120 LDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 9999999999999999999998766799999999999998899999999985
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=351.22 Aligned_cols=201 Identities=24% Similarity=0.305 Sum_probs=173.4
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEE
Q 000755 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSI 1134 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~ 1134 (1300)
++++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++... +.+++|
T Consensus 2 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~~ 74 (255)
T PRK11248 2 LQISHLYADYGG--KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERGV 74 (255)
T ss_pred EEEEEEEEEeCC--eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEEE
Confidence 789999999965 3599999999999999999999999999999999999999999999999998642 346899
Q ss_pred EcCCCCCCc-ccHHHhcCCC---CCCC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHH
Q 000755 1135 IPQDPTMFE-GTVRNNLDPL---EEYK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVL 1206 (1300)
Q Consensus 1135 vpQ~~~lf~-gTvr~Nl~~~---~~~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARal 1206 (1300)
+||++.+|. .|+++|+... .... ++++.++++.+++.+...+ ...+||||||||++|||||
T Consensus 75 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qrl~laral 143 (255)
T PRK11248 75 VFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKR-----------YIWQLSGGQRQRVGIARAL 143 (255)
T ss_pred EeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhC-----------ChhhCCHHHHHHHHHHHHH
Confidence 999999887 5999998642 1122 2346778888887654333 3467899999999999999
Q ss_pred ccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc--CCcEEEEEeCChhhhhc-cCEEEEEe--CCEEEEecCh
Q 000755 1207 LKKSKVLVLDEATASVDTATDNLIQQTLRQHF--SDCTVITIAHRITSVID-SDMVLLLS--HGIIEEYDSP 1273 (1300)
Q Consensus 1207 l~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~iaHrl~~i~~-~D~v~vl~--~G~i~e~g~~ 1273 (1300)
+++|++|||||||++||+.+...+.+.|++.. .++|||++||+++.+.. ||+|++|+ +|++++.+++
T Consensus 144 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 144 AANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 99999999999999999999999999999863 37899999999999977 99999998 5999998754
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-38 Score=318.36 Aligned_cols=198 Identities=30% Similarity=0.445 Sum_probs=173.0
Q ss_pred EEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe-----------EEEE
Q 000755 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KAYV 685 (1300)
Q Consensus 617 I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-----------~ayv 685 (1300)
+.++++.|+|... . -..+++|++||++||+|||||||||||++|+|+..|.+|+|.++|. ++++
T Consensus 2 l~L~~V~~~y~~~----~-~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSml 76 (231)
T COG3840 2 LALDDVRFSYGHL----P-MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSML 76 (231)
T ss_pred ccccceEEeeCcc----e-EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhh
Confidence 5678899999632 1 2578999999999999999999999999999999999999999984 5899
Q ss_pred ecCCcCCC-CCHHHHHhcCCC-------CCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHHHHHc
Q 000755 686 AQSPWIQS-GNIEDNILFGKP-------MDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALY 757 (1300)
Q Consensus 686 ~Q~~~l~~-~Ti~eNI~fg~~-------~~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLARAly 757 (1300)
+|+.-+|. -||++||-+|.. .+.++.+.++...+|....+.+| ..||||||||+||||++.
T Consensus 77 FQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP-----------~~LSGGqRQRvALARclv 145 (231)
T COG3840 77 FQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLP-----------GELSGGQRQRVALARCLV 145 (231)
T ss_pred hhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCc-----------cccCchHHHHHHHHHHHh
Confidence 99999996 499999999964 35678888999999999888887 479999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHhh--cCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHHHhcC
Q 000755 758 QDADIYLFDDPFSAVDAHTGSHLFKEVLLGL--LRSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDILNSG 831 (1300)
Q Consensus 758 ~~~~illLDep~saLD~~t~~~i~~~~~~~~--l~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 831 (1300)
++-+|++|||||||||+.-+..... ++..+ -++.|+++|||+++-+.. +|+++++++|+|.++|+.++++...
T Consensus 146 R~~PilLLDEPFsALdP~LR~eMl~-Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~ 221 (231)
T COG3840 146 REQPILLLDEPFSALDPALRAEMLA-LVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGK 221 (231)
T ss_pred ccCCeEEecCchhhcCHHHHHHHHH-HHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccC
Confidence 9999999999999999999887754 33333 257899999999998765 9999999999999999999987643
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=339.52 Aligned_cols=214 Identities=23% Similarity=0.394 Sum_probs=187.7
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHH-hccc
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDL-RSRL 1132 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~l-r~~i 1132 (1300)
-+++++++++|+.- .+++||||++++||++||||||||||||++++|.|+|+|++|+|.++|.||+.+++++. |..|
T Consensus 4 lL~v~~l~k~FGGl--~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 4 LLEVRGLSKRFGGL--TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred eeeeccceeecCCE--EEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 36789999999864 48999999999999999999999999999999999999999999999999999998885 4468
Q ss_pred EEEcCCCCCCcc-cHHHhcCCCCC-------------C--C----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCC
Q 000755 1133 SIIPQDPTMFEG-TVRNNLDPLEE-------------Y--K----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENW 1192 (1300)
Q Consensus 1133 ~~vpQ~~~lf~g-Tvr~Nl~~~~~-------------~--~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~L 1192 (1300)
+--+|.+.+|++ ||.||+..... + . .++..+.|+.++|.+.. .+...+|
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a-----------~~~A~~L 150 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELA-----------DRPAGNL 150 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhh-----------cchhhcC
Confidence 888999999987 99999853210 1 1 23455667777766543 3445689
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhc-cCEEEEEeCCEEEE
Q 000755 1193 SMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGIIEE 1269 (1300)
Q Consensus 1193 SgGqrQrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e 1269 (1300)
|+|||+|+-|||||..+|++|+||||.|||.+.....+.+.|++..+ +.||++|-||++.+++ ||||+||+.|+++.
T Consensus 151 syG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IA 230 (250)
T COG0411 151 SYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIA 230 (250)
T ss_pred ChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcc
Confidence 99999999999999999999999999999999999999999998764 4899999999999999 99999999999999
Q ss_pred ecChhhHHhcC
Q 000755 1270 YDSPTKLLENK 1280 (1300)
Q Consensus 1270 ~g~~~~l~~~~ 1280 (1300)
+|+|+++.+++
T Consensus 231 eG~P~eV~~dp 241 (250)
T COG0411 231 EGTPEEVRNNP 241 (250)
T ss_pred cCCHHHHhcCH
Confidence 99999999875
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=401.06 Aligned_cols=328 Identities=26% Similarity=0.325 Sum_probs=230.6
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHccCC--CEEEEecCCCCCCHHHHHHHHHHHHHhh-cCCcEEEEEecCCCccccCCEEE
Q 000755 735 IGERGINLSGGQKQRIQIARALYQDA--DIYLFDDPFSAVDAHTGSHLFKEVLLGL-LRSKTVIYVTHQVEFLPAADLIL 811 (1300)
Q Consensus 735 ige~g~~LSGGQkqRiaLARAly~~~--~illLDep~saLD~~t~~~i~~~~~~~~-l~~~TvIlvtH~~~~l~~~d~i~ 811 (1300)
......+|||||+|||+|||||..+| ++|||||||++||+...+.+++ .+..+ .+|.|||+|||+++++..||+|+
T Consensus 470 ldR~~~tLSGGE~QRV~LAraL~~~p~g~lLILDEPTagLD~~~~~~L~~-lL~~L~~~G~TVIvVeHd~~vi~~aDrVi 548 (1809)
T PRK00635 470 PERALATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLIN-VIKKLRDQGNTVLLVEHDEQMISLADRII 548 (1809)
T ss_pred CCCchhhCCHHHHHHHHHHHHHhcCCCCcEEEEECCccCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCcHHHHHhCCEEE
Confidence 35667899999999999999999999 8999999999999999998875 44444 35899999999999877799999
Q ss_pred EEe------CCeEEEecChHHHHhcCchHHHHHHHHHHHhhhhcccCCCCccccccccccCCCccccccccccCcccccc
Q 000755 812 VMK------DGKITQAGKYNDILNSGTDFMVLVGAHQQALSALDSIEGGPVSERISMNKENGGMDTTNGVTMKEGNEDIQ 885 (1300)
Q Consensus 812 ~l~------~G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~~lp~grnr~s 885 (1300)
+|. +|+|+..|++++++..... +..
T Consensus 549 ~L~pGag~~gG~Iv~~G~~~eil~~~~~---l~~---------------------------------------------- 579 (1809)
T PRK00635 549 DIGPGAGIFGGEVLFNGSPREFLAKSDS---LTA---------------------------------------------- 579 (1809)
T ss_pred EEcCCcccCCCEEEEecCHHHHhhChHH---HHH----------------------------------------------
Confidence 996 7899999988776431100 000
Q ss_pred ccchhhhhhhHHHHHHHHHHhhhhhhHHHHHHHHhhchHHHHHhcchHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Q 000755 886 TDKVDEQYYIPSARELSRLVGVCKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFHIAGAMEWLCFRLD 965 (1300)
Q Consensus 886 ~D~v~~~~y~~~~r~l~rl~~~~~sp~~~~~~E~l~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~ 965 (1300)
.+
T Consensus 580 ------------------------------------------------------------------------~~------ 581 (1809)
T PRK00635 580 ------------------------------------------------------------------------KY------ 581 (1809)
T ss_pred ------------------------------------------------------------------------HH------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccCCC
Q 000755 966 MLSSLTFAFSLVLLISIPKGVIEPAIAGLAVTYGLNLNMLQAWVIWNLCNLENKIISVERILQYTCISSEPPLVIEESRP 1045 (1300)
Q Consensus 966 ~~~~~~~~~~~~~~~~~~~g~~~~~~~gl~l~~~~~~~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~ 1045 (1300)
+ .+. ...+. + . ..+
T Consensus 582 ----------------l-~~~-------------------------------------------~~~~~--~---~-~~~ 595 (1809)
T PRK00635 582 ----------------L-RQE-------------------------------------------LTIPI--P---E-KRT 595 (1809)
T ss_pred ----------------h-cCc-------------------------------------------ccccC--c---c-ccc
Confidence 0 000 00000 0 0 000
Q ss_pred CCCCCCCceEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHH---------HHhcCCCCCcc----e
Q 000755 1046 DCSWPTHGEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQ---------TLFRIVEPTAG----E 1112 (1300)
Q Consensus 1046 ~~~wp~~g~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~---------~L~gl~~p~~G----~ 1112 (1300)
+..+.++++|++. ..|+|+|++|++||++||+|+||||||||++ .|.|...+..+ .
T Consensus 596 ----~~~~~L~l~~~~~-------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~ 664 (1809)
T PRK00635 596 ----NSLGTLTLSKATK-------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGA 664 (1809)
T ss_pred ----CCCCeEEEecccc-------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccc
Confidence 0123588888863 2699999999999999999999999999999 55554333111 2
Q ss_pred ----EEECCeecCCC----CHH------HHh---------cc-----cEEEcCC------------------C-------
Q 000755 1113 ----IVIDGINISSI----GLH------DLR---------SR-----LSIIPQD------------------P------- 1139 (1300)
Q Consensus 1113 ----I~idg~di~~i----~~~------~lr---------~~-----i~~vpQ~------------------~------- 1139 (1300)
|.||-.++..- +.. ++| ++ ..+.++. |
T Consensus 665 i~~vi~idQspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~ 744 (1809)
T PRK00635 665 ISRLVHITRDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCP 744 (1809)
T ss_pred cceeEEecCCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECC
Confidence 34443333221 011 333 11 1122221 0
Q ss_pred -------------CCCcc-cHHHhcCCCCC------CCHHHHHH---HHHHcCCcHHHHhhcCCCccc-cccCCCCCChh
Q 000755 1140 -------------TMFEG-TVRNNLDPLEE------YKDEEIWE---ALDKCQLGDEVRNKEGKLDSR-VTENGENWSMG 1195 (1300)
Q Consensus 1140 -------------~lf~g-Tvr~Nl~~~~~------~~d~~i~~---~l~~~~l~~~i~~~~~gLdt~-v~e~G~~LSgG 1195 (1300)
..+.+ ||.|||++... ...+++.+ +|+.+ ||+.. .+....+||||
T Consensus 745 ~C~GkRy~~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l~~L~~v-----------GL~~l~l~q~~~tLSGG 813 (1809)
T PRK00635 745 SCLGKRFLPQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKIHALCSL-----------GLDYLPLGRPLSSLSGG 813 (1809)
T ss_pred ccCCcccCHHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHHHHHHHc-----------CCcchhhcCccccCCHH
Confidence 12333 77777754311 01122222 33333 44433 45666789999
Q ss_pred HHHHHHHHHHHc---cCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhccCEEEEEe------CC
Q 000755 1196 QRQLVCLGRVLL---KKSKVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVIDSDMVLLLS------HG 1265 (1300)
Q Consensus 1196 qrQrl~LARall---~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~~D~v~vl~------~G 1265 (1300)
||||++|||||+ ++|++|||||||++||+.+.+.+.+.|++.. ++.|||+|+|+++.+..||+|++|. +|
T Consensus 814 E~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G 893 (1809)
T PRK00635 814 EIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGG 893 (1809)
T ss_pred HHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCC
Confidence 999999999998 6999999999999999999999999998864 4789999999999996699999996 79
Q ss_pred EEEEecChhhHHh
Q 000755 1266 IIEEYDSPTKLLE 1278 (1300)
Q Consensus 1266 ~i~e~g~~~~l~~ 1278 (1300)
++++.|+|+++..
T Consensus 894 ~iv~~Gtpeel~~ 906 (1809)
T PRK00635 894 YLLASCSPEELIH 906 (1809)
T ss_pred EEEEeCCHHHHHh
Confidence 9999999999986
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-38 Score=343.56 Aligned_cols=201 Identities=35% Similarity=0.539 Sum_probs=177.2
Q ss_pred eEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe--------------
Q 000755 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 681 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-------------- 681 (1300)
.++++|++|+|++. .++|+|+|++|++|+.++|+|+||||||||++++.|.++|++|.|.++|.
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 47899999999754 68999999999999999999999999999999999999999999998873
Q ss_pred EEEEecCC--cCCCCCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHH
Q 000755 682 KAYVAQSP--WIQSGNIEDNILFGKP---MDR----EKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQI 752 (1300)
Q Consensus 682 ~ayv~Q~~--~l~~~Ti~eNI~fg~~---~~~----~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaL 752 (1300)
++||+|+| .+|..||.|.+.||.. +.+ ++..++++.|++.+..+ ....+||||||||+||
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~-----------r~p~~LSGGqkqRvaI 149 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLD-----------RPPFNLSGGQKQRVAI 149 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhcc-----------CCccccCCcceeeHHh
Confidence 79999999 6889999999999964 333 45677888888876644 3457899999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc-C-CcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHHHh
Q 000755 753 ARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-R-SKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDILN 829 (1300)
Q Consensus 753 ARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l-~-~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 829 (1300)
|.+|..+|+++|||||||+||+...+.+.+ .+..+. . ++|+|++||+++.+.. ||++++|++|+++..|++.++.+
T Consensus 150 A~vLa~~P~iliLDEPta~LD~~~~~~l~~-~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~ 228 (235)
T COG1122 150 AGVLAMGPEILLLDEPTAGLDPKGRRELLE-LLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFN 228 (235)
T ss_pred hHHHHcCCCEEEEcCCCCCCCHHHHHHHHH-HHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhh
Confidence 999999999999999999999999999875 444443 3 5899999999999876 99999999999999999988876
Q ss_pred c
Q 000755 830 S 830 (1300)
Q Consensus 830 ~ 830 (1300)
.
T Consensus 229 ~ 229 (235)
T COG1122 229 D 229 (235)
T ss_pred h
Confidence 4
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=365.59 Aligned_cols=212 Identities=25% Similarity=0.390 Sum_probs=180.9
Q ss_pred eeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCC----HHHHhcccEE
Q 000755 1059 NLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIG----LHDLRSRLSI 1134 (1300)
Q Consensus 1059 ~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~----~~~lr~~i~~ 1134 (1300)
|++++|++. .+ |+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+ ....|++++|
T Consensus 4 ~l~~~~~~~---~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~ 79 (354)
T TIGR02142 4 RFSKRLGDF---SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGY 79 (354)
T ss_pred EEEEEECCE---EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEE
Confidence 789999753 35 999999999999999999999999999999999999999999999986532 2356778999
Q ss_pred EcCCCCCCcc-cHHHhcCCCC-CCC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHcc
Q 000755 1135 IPQDPTMFEG-TVRNNLDPLE-EYK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLK 1208 (1300)
Q Consensus 1135 vpQ~~~lf~g-Tvr~Nl~~~~-~~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~ 1208 (1300)
+||++.+|.. |+++|+.+.. ... ++++.++++.+++.+...+ ...+||||||||++|||||+.
T Consensus 80 v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~LSgGqkqRvalAraL~~ 148 (354)
T TIGR02142 80 VFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGR-----------LPGRLSGGEKQRVAIGRALLS 148 (354)
T ss_pred EecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcC-----------ChhhCCHHHHHHHHHHHHHHc
Confidence 9999999976 9999996421 111 2346777888877654433 345789999999999999999
Q ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHHhcCCChHH
Q 000755 1209 KSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENKSSSFA 1285 (1300)
Q Consensus 1209 ~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~~~~~~~f~ 1285 (1300)
+|++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++..++...|.
T Consensus 149 ~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~ 228 (354)
T TIGR02142 149 SPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPWL 228 (354)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCcCcccc
Confidence 9999999999999999999999999998653 6899999999999987 999999999999999999999877655443
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=334.42 Aligned_cols=192 Identities=33% Similarity=0.462 Sum_probs=160.5
Q ss_pred EEEEeEEEEecCCC-CCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe--------------
Q 000755 617 IEIVDGNFAWDISS-NNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 681 (1300)
Q Consensus 617 I~i~~~~fs~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-------------- 681 (1300)
++++|++..|..+. ..++|+++||+|++||+++|+|||||||||||++|.|...|++|.|.++|.
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 56889999987432 246899999999999999999999999999999999999999999999983
Q ss_pred ---EEEEecCCcCC-CCCHHHHHhcC----CCCC---HHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHH
Q 000755 682 ---KAYVAQSPWIQ-SGNIEDNILFG----KPMD---REKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRI 750 (1300)
Q Consensus 682 ---~ayv~Q~~~l~-~~Ti~eNI~fg----~~~~---~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRi 750 (1300)
+|||+|+..+. +-|++|||.+. .... .++.+..++..++.+... .....+|||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~----------~~~p~eLSGGqqQRV 151 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLL----------KKKPSELSGGQQQRV 151 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhc----------cCCchhcCHHHHHHH
Confidence 69999999875 67999999952 2221 344555555556654433 234578999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhh--cCCcEEEEEecCCCccccCCEEEEEeCCeEE
Q 000755 751 QIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL--LRSKTVIYVTHQVEFLPAADLILVMKDGKIT 819 (1300)
Q Consensus 751 aLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~--l~~~TvIlvtH~~~~l~~~d~i~~l~~G~i~ 819 (1300)
||||||+.+|+|++.||||.+||.++++.+++- +... ..|+|+|+|||+.+....|||++.|+||++.
T Consensus 152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~l-l~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 152 AIARALINNPKIILADEPTGNLDSKTAKEVLEL-LRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred HHHHHHhcCCCeEEeeCccccCChHHHHHHHHH-HHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 999999999999999999999999999999864 4443 2478999999999999999999999999954
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=386.18 Aligned_cols=338 Identities=25% Similarity=0.386 Sum_probs=228.6
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHccCC--CEEEEecCCCCCCHHHHHHHHHHHHHhh-cCCcEEEEEecCCCccccCCEEE
Q 000755 735 IGERGINLSGGQKQRIQIARALYQDA--DIYLFDDPFSAVDAHTGSHLFKEVLLGL-LRSKTVIYVTHQVEFLPAADLIL 811 (1300)
Q Consensus 735 ige~g~~LSGGQkqRiaLARAly~~~--~illLDep~saLD~~t~~~i~~~~~~~~-l~~~TvIlvtH~~~~l~~~d~i~ 811 (1300)
.++...+|||||+|||+|||||.++| ++|||||||++||++....+++ ++..+ .+|+|||+|+|+++.+..||+|+
T Consensus 481 l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~-~L~~L~~~G~TVIvVeHd~~~i~~aD~vi 559 (924)
T TIGR00630 481 LSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIN-TLKRLRDLGNTVIVVEHDEETIRAADYVI 559 (924)
T ss_pred cCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHH-HHHHHHhCCCEEEEEECCHHHHhhCCEEE
Confidence 57788899999999999999999986 8999999999999999998875 44443 35899999999999998999999
Q ss_pred EE------eCCeEEEecChHHHHhcCchHHHHHHHHHHHhhhhcccCCCCccccccccccCCCccccccccccCcccccc
Q 000755 812 VM------KDGKITQAGKYNDILNSGTDFMVLVGAHQQALSALDSIEGGPVSERISMNKENGGMDTTNGVTMKEGNEDIQ 885 (1300)
Q Consensus 812 ~l------~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~~lp~grnr~s 885 (1300)
+| ++|+|++.|+++++........
T Consensus 560 ~LgpgaG~~~G~Iv~~g~~~el~~~~~~lt-------------------------------------------------- 589 (924)
T TIGR00630 560 DIGPGAGIHGGEVVASGTPEEILANPDSLT-------------------------------------------------- 589 (924)
T ss_pred EecccccCCCCEEeeccCHHHHhcCchhee--------------------------------------------------
Confidence 99 8999999999887643210000
Q ss_pred ccchhhhhhhHHHHHHHHHHhhhhhhHHHHHHHHhhchHHHHHhcchHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Q 000755 886 TDKVDEQYYIPSARELSRLVGVCKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFHIAGAMEWLCFRLD 965 (1300)
Q Consensus 886 ~D~v~~~~y~~~~r~l~rl~~~~~sp~~~~~~E~l~G~~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~ 965 (1300)
..|+
T Consensus 590 ------~~~l---------------------------------------------------------------------- 593 (924)
T TIGR00630 590 ------GQYL---------------------------------------------------------------------- 593 (924)
T ss_pred ------eecc----------------------------------------------------------------------
Confidence 0000
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccCCC
Q 000755 966 MLSSLTFAFSLVLLISIPKGVIEPAIAGLAVTYGLNLNMLQAWVIWNLCNLENKIISVERILQYTCISSEPPLVIEESRP 1045 (1300)
Q Consensus 966 ~~~~~~~~~~~~~~~~~~~g~~~~~~~gl~l~~~~~~~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~ 1045 (1300)
.+.. + ...+. ...+
T Consensus 594 ------------------~~~~-------------------------------------~----~~~~~-------~~~~ 607 (924)
T TIGR00630 594 ------------------SGKK-------------------------------------K----IEVPK-------ERRP 607 (924)
T ss_pred ------------------cccc-------------------------------------c----ccccc-------cccC
Confidence 0000 0 00000 0001
Q ss_pred CCCCCCCceEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHh------cCCC----C-------
Q 000755 1046 DCSWPTHGEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLF------RIVE----P------- 1108 (1300)
Q Consensus 1046 ~~~wp~~g~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~------gl~~----p------- 1108 (1300)
+....++++|++. ..|+|+||+|++||++||+|+||||||||++-.+ ++.+ |
T Consensus 608 ----~~~~~l~l~~~~~-------~~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~~~l~~~~~~~~~~~~~~~~~~~~~~ 676 (924)
T TIGR00630 608 ----GNGKFLTLKGARE-------NNLKNITVSIPLGLFTCITGVSGSGKSTLINDTLYPALARRLNGAKTQPGRYKSIE 676 (924)
T ss_pred ----CCcceEEEEeCcc-------CCcCceEEEEeCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhcccccCCCCcCccc
Confidence 1122589999873 2599999999999999999999999999998332 1111 1
Q ss_pred ----CcceEEECCeecCCCC----------HHHHhcccEEEcCC------CCCCcc--------------cHHHhcCCC-
Q 000755 1109 ----TAGEIVIDGINISSIG----------LHDLRSRLSIIPQD------PTMFEG--------------TVRNNLDPL- 1153 (1300)
Q Consensus 1109 ----~~G~I~idg~di~~i~----------~~~lr~~i~~vpQ~------~~lf~g--------------Tvr~Nl~~~- 1153 (1300)
-.--|.||-.+|..-+ ...+|.-++=.|+- +..|+- .+.-++.+.
T Consensus 677 ~~~~~~~~v~vdQ~pi~~~~RS~~aTy~~~~d~iR~lfa~~~~a~~~g~~~~~FSfN~~~G~C~~C~G~G~~~~~~~f~~ 756 (924)
T TIGR00630 677 GLEHLDKVIHIDQSPIGRTPRSNPATYTGVFDEIRELFAETPEAKARGYTPGRFSFNVKGGRCEACQGDGVIKIEMHFLP 756 (924)
T ss_pred cccCCCceEEEecCCCCCCCCCchhhhhhhHHHHHHHHhcCCccccCCCChhhcCCCCCCCCCCCCccceEEEEEccCCC
Confidence 1112455544443211 12345555444431 122221 111011000
Q ss_pred -----------CCC--------------------CHHHHHHHHHHc-CCcHHHHhh-cCCCcc-ccccCCCCCChhHHHH
Q 000755 1154 -----------EEY--------------------KDEEIWEALDKC-QLGDEVRNK-EGKLDS-RVTENGENWSMGQRQL 1199 (1300)
Q Consensus 1154 -----------~~~--------------------~d~~i~~~l~~~-~l~~~i~~~-~~gLdt-~v~e~G~~LSgGqrQr 1199 (1300)
..+ +-+|..+..+.. .+.+....+ .-||+. .++.....|||||+||
T Consensus 757 ~~~~~C~~C~G~R~~~e~l~v~~~g~~i~dvl~~tv~e~~~f~~~~~~i~~~l~~L~~~gL~~l~l~~~~~tLSgGe~QR 836 (924)
T TIGR00630 757 DVYVPCEVCKGKRYNRETLEVKYKGKNIADVLDMTVEEAYEFFEAVPSISRKLQTLCDVGLGYIKLGQPATTLSGGEAQR 836 (924)
T ss_pred CcccCCCCcCCceeChHHHhceeCCCCHHHHhCCcHHHHHHHHHhccchhHHHHHHHHcCCCchhhcCccccCCHHHHHH
Confidence 001 111121211111 011111100 125554 3677788999999999
Q ss_pred HHHHHHHcc---CCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhccCEEEEE------eCCEEEE
Q 000755 1200 VCLGRVLLK---KSKVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVIDSDMVLLL------SHGIIEE 1269 (1300)
Q Consensus 1200 l~LARall~---~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~~D~v~vl------~~G~i~e 1269 (1300)
++|||+|++ +|+++||||||++||+.+.+.+.+.|++.. ++.|||+|+|+++.+..||+|++| ++|+|++
T Consensus 837 l~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~~aD~ii~Lgp~~G~~gG~iv~ 916 (924)
T TIGR00630 837 IKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIKTADYIIDLGPEGGDGGGTIVA 916 (924)
T ss_pred HHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEecCCccCCCCEEEE
Confidence 999999997 599999999999999999999999999875 478999999999999889999999 7999999
Q ss_pred ecChhhH
Q 000755 1270 YDSPTKL 1276 (1300)
Q Consensus 1270 ~g~~~~l 1276 (1300)
.|+|+++
T Consensus 917 ~G~~~~l 923 (924)
T TIGR00630 917 SGTPEEV 923 (924)
T ss_pred eCCHHHh
Confidence 9999876
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=330.15 Aligned_cols=172 Identities=32% Similarity=0.510 Sum_probs=158.4
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCC--HHHHhccc
Q 000755 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIG--LHDLRSRL 1132 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~--~~~lr~~i 1132 (1300)
|+++|++++|+. +++++|+||++++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+ ....++.+
T Consensus 1 i~~~~l~~~~~~--~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (178)
T cd03229 1 LELKNVSKRYGQ--KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRI 78 (178)
T ss_pred CEEEEEEEEECC--eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcE
Confidence 478999999965 35999999999999999999999999999999999999999999999999998775 56678899
Q ss_pred EEEcCCCCCCcc-cHHHhcCCCCCCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCC
Q 000755 1133 SIIPQDPTMFEG-TVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSK 1211 (1300)
Q Consensus 1133 ~~vpQ~~~lf~g-Tvr~Nl~~~~~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~~ 1211 (1300)
+|+||+|.+|.+ |+++|+... ||+|||||++|||||+++|+
T Consensus 79 ~~~~q~~~~~~~~t~~~~l~~~--------------------------------------lS~G~~qr~~la~al~~~p~ 120 (178)
T cd03229 79 GMVFQDFALFPHLTVLENIALG--------------------------------------LSGGQQQRVALARALAMDPD 120 (178)
T ss_pred EEEecCCccCCCCCHHHheeec--------------------------------------CCHHHHHHHHHHHHHHCCCC
Confidence 999999998865 999998642 79999999999999999999
Q ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhc-cCEEEEEeCCE
Q 000755 1212 VLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGI 1266 (1300)
Q Consensus 1212 iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~-~D~v~vl~~G~ 1266 (1300)
++||||||++||+.+...+.+.|++..+ ++|+|++||+++.+.+ ||+|++|++|+
T Consensus 121 llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 121 VLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 9999999999999999999999998654 5899999999999986 99999999985
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-37 Score=344.79 Aligned_cols=222 Identities=20% Similarity=0.328 Sum_probs=182.9
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCee-----cCCCCHHH-
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGIN-----ISSIGLHD- 1127 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~d-----i~~i~~~~- 1127 (1300)
.|+++|++++|++. .+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.+ +...+..+
T Consensus 3 ~l~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (253)
T TIGR02323 3 LLQVSGLSKSYGGG--KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAER 80 (253)
T ss_pred eEEEeeeEEEeCCc--eEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHH
Confidence 58999999999753 58999999999999999999999999999999999999999999999987 76666543
Q ss_pred ---HhcccEEEcCCCC--CC-cccHHHhcCC----CCC----CCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCC
Q 000755 1128 ---LRSRLSIIPQDPT--MF-EGTVRNNLDP----LEE----YKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWS 1193 (1300)
Q Consensus 1128 ---lr~~i~~vpQ~~~--lf-~gTvr~Nl~~----~~~----~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LS 1193 (1300)
.++.++|+||++. ++ ..|+.+|+.. ... ..++++.+.++..++.+ +.......+||
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----------~~~~~~~~~LS 150 (253)
T TIGR02323 81 RRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDP----------TRIDDLPRAFS 150 (253)
T ss_pred HHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCCh----------hhhhcCchhcC
Confidence 2467999999985 22 3477888631 111 12345566677766642 12334557899
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhc-cCEEEEEeCCEEEEe
Q 000755 1194 MGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGIIEEY 1270 (1300)
Q Consensus 1194 gGqrQrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~ 1270 (1300)
||||||++|||||+++|++|||||||++||+.+.+.+.+.|++..+ +.|||++||+++.+.. ||++++|++|++++.
T Consensus 151 gG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~ 230 (253)
T TIGR02323 151 GGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVES 230 (253)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999988642 7899999999999986 999999999999999
Q ss_pred cChhhHHhcCCChHHHH
Q 000755 1271 DSPTKLLENKSSSFAQL 1287 (1300)
Q Consensus 1271 g~~~~l~~~~~~~f~~l 1287 (1300)
|+++++.+++...|.++
T Consensus 231 ~~~~~~~~~~~~~~~~~ 247 (253)
T TIGR02323 231 GLTDQVLDDPQHPYTQL 247 (253)
T ss_pred CCHHHHhcCCCCHHHHH
Confidence 99999987655555443
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-37 Score=349.10 Aligned_cols=221 Identities=25% Similarity=0.344 Sum_probs=183.4
Q ss_pred eEEEEeeeeeeCCC-------CCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHH
Q 000755 1054 EVDILNLQVRYAPH-------LPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLH 1126 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~-------~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~ 1126 (1300)
.|+++||+++|+.. .+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++..++..
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 48999999999741 24699999999999999999999999999999999999999999999999998876553
Q ss_pred ---HHhcccEEEcCCCC--CCc-ccHHHhcCCC----CCCC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCC
Q 000755 1127 ---DLRSRLSIIPQDPT--MFE-GTVRNNLDPL----EEYK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENW 1192 (1300)
Q Consensus 1127 ---~lr~~i~~vpQ~~~--lf~-gTvr~Nl~~~----~~~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~L 1192 (1300)
.+|++++|+||++. ++. .|+++|+... .... .+.+.++++.+++... .....+..|
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~----------~~~~~~~~L 152 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDS----------VLDKRPPQL 152 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChh----------HhhCCCccC
Confidence 46788999999983 443 5999997421 1111 1235566666665321 223455789
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhc-cCEEEEEeCCEEEE
Q 000755 1193 SMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGIIEE 1269 (1300)
Q Consensus 1193 SgGqrQrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e 1269 (1300)
|+|||||++|||||+.+|++|||||||++||+.+...+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++
T Consensus 153 S~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~ 232 (268)
T PRK10419 153 SGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE 232 (268)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEee
Confidence 99999999999999999999999999999999999999999988653 7899999999999987 99999999999999
Q ss_pred ecChhhHHhcCCChHH
Q 000755 1270 YDSPTKLLENKSSSFA 1285 (1300)
Q Consensus 1270 ~g~~~~l~~~~~~~f~ 1285 (1300)
.|+++++... ++.+.
T Consensus 233 ~g~~~~~~~~-~~~~~ 247 (268)
T PRK10419 233 TQPVGDKLTF-SSPAG 247 (268)
T ss_pred eCChhhccCC-CCHHH
Confidence 9999998853 44443
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=361.82 Aligned_cols=202 Identities=28% Similarity=0.431 Sum_probs=172.8
Q ss_pred eEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe-----------EEE
Q 000755 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KAY 684 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-----------~ay 684 (1300)
.++++|++++|+. +.++|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++|. ++|
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 80 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAM 80 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 4889999999941 357999999999999999999999999999999999999999999999883 799
Q ss_pred EecCCcCCC-CCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHHHHH
Q 000755 685 VAQSPWIQS-GNIEDNILFGKP---MDR----EKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARAL 756 (1300)
Q Consensus 685 v~Q~~~l~~-~Ti~eNI~fg~~---~~~----~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLARAl 756 (1300)
|+|++.+|. .||+|||.|+.. .+. ++.+++++..++.+..+ ....+||||||||++|||||
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGq~QRvalARAL 149 (356)
T PRK11650 81 VFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLD-----------RKPRELSGGQRQRVAMGRAI 149 (356)
T ss_pred EeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhh-----------CChhhCCHHHHHHHHHHHHH
Confidence 999999984 699999999753 222 34556666666654443 34468999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcC--CcEEEEEecCCCccc-cCCEEEEEeCCeEEEecChHHHHhcC
Q 000755 757 YQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLR--SKTVIYVTHQVEFLP-AADLILVMKDGKITQAGKYNDILNSG 831 (1300)
Q Consensus 757 y~~~~illLDep~saLD~~t~~~i~~~~~~~~l~--~~TvIlvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 831 (1300)
+.+|+++|||||||+||+.++..+.+.+ ..+.+ +.|+|+|||+++.+. .||+|++|++|++++.|+++++....
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~l-~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p 226 (356)
T PRK11650 150 VREPAVFLFDEPLSNLDAKLRVQMRLEI-QRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKP 226 (356)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCC
Confidence 9999999999999999999999887654 44332 789999999998765 59999999999999999999987653
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=328.58 Aligned_cols=170 Identities=30% Similarity=0.546 Sum_probs=157.0
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEE
Q 000755 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSI 1134 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~ 1134 (1300)
++++|++++|+.. ++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+ ..+|++++|
T Consensus 1 l~~~~l~~~~~~~--~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (173)
T cd03230 1 IEVRNLSKRYGKK--TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGY 77 (173)
T ss_pred CEEEEEEEEECCe--eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEEE
Confidence 4689999999753 5999999999999999999999999999999999999999999999999987655 567889999
Q ss_pred EcCCCCCCcc-cHHHhcCCCCCCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCEE
Q 000755 1135 IPQDPTMFEG-TVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVL 1213 (1300)
Q Consensus 1135 vpQ~~~lf~g-Tvr~Nl~~~~~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~~iL 1213 (1300)
+||++.+|.+ |+++|+. ||+|||||++|||||+++|+++
T Consensus 78 ~~q~~~~~~~~tv~~~~~----------------------------------------LS~G~~qrv~laral~~~p~il 117 (173)
T cd03230 78 LPEEPSLYENLTVRENLK----------------------------------------LSGGMKQRLALAQALLHDPELL 117 (173)
T ss_pred EecCCccccCCcHHHHhh----------------------------------------cCHHHHHHHHHHHHHHcCCCEE
Confidence 9999998876 9999973 7999999999999999999999
Q ss_pred EEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhc-cCEEEEEeCCEE
Q 000755 1214 VLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGII 1267 (1300)
Q Consensus 1214 lLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i 1267 (1300)
+|||||++||+.+.+.+.+.|++.. ++.|+|++||+.+.+.. ||++++|++|++
T Consensus 118 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 118 ILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 9999999999999999999999865 36899999999999986 999999999974
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=360.12 Aligned_cols=202 Identities=25% Similarity=0.386 Sum_probs=170.8
Q ss_pred EEEEeEEEEecCCC-CCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe--------------
Q 000755 617 IEIVDGNFAWDISS-NNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 681 (1300)
Q Consensus 617 I~i~~~~fs~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-------------- 681 (1300)
|+++|++++|+.+. ..++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++|.
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996322 347999999999999999999999999999999999999999999999873
Q ss_pred --EEEEecCCcCCC-CCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHH
Q 000755 682 --KAYVAQSPWIQS-GNIEDNILFGKP---MDR----EKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQ 751 (1300)
Q Consensus 682 --~ayv~Q~~~l~~-~Ti~eNI~fg~~---~~~----~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRia 751 (1300)
++|++|++.++. .|++|||.|+.. .+. ++..++++..++.+.. ......||||||||++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~-----------~~~~~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKH-----------DSYPSNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------hCChhhCCHHHHHHHH
Confidence 699999999885 799999998642 222 2344555555554332 3456789999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHHH
Q 000755 752 IARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL--RSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDIL 828 (1300)
Q Consensus 752 LARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l--~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 828 (1300)
|||||..+|+++|||||||+||+.+...+.+ ++..+. .+.|+|+|||+++.+.. ||+|++|++|+|++.|+++++.
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~-lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILE-LLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIF 229 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999998875 454443 27899999999999865 9999999999999999999987
Q ss_pred hc
Q 000755 829 NS 830 (1300)
Q Consensus 829 ~~ 830 (1300)
..
T Consensus 230 ~~ 231 (343)
T TIGR02314 230 SH 231 (343)
T ss_pred cC
Confidence 54
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=341.95 Aligned_cols=202 Identities=23% Similarity=0.340 Sum_probs=173.9
Q ss_pred EEEEeeeeeeCCC--CCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHH---HHh
Q 000755 1055 VDILNLQVRYAPH--LPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLH---DLR 1129 (1300)
Q Consensus 1055 i~~~~v~~~y~~~--~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~---~lr 1129 (1300)
++++|+++.|+++ ...+|+|+||++++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+.. ..|
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 7899999999753 14699999999999999999999999999999999999999999999999999776643 357
Q ss_pred cccEEEcCCCCCCc-ccHHHhcCCCC----CCC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHH
Q 000755 1130 SRLSIIPQDPTMFE-GTVRNNLDPLE----EYK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLV 1200 (1300)
Q Consensus 1130 ~~i~~vpQ~~~lf~-gTvr~Nl~~~~----~~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl 1200 (1300)
+.++|+||++.+|. .|+.+|+.+.. ..+ ++.+.++++++++.+...+.+ .+||+|||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrv 150 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP-----------HNLSGGQKQRV 150 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcCh-----------hhCCHHHHHHH
Confidence 88999999999887 59999986421 122 234667788888766554443 47899999999
Q ss_pred HHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhccCEEEEEeCCEE
Q 000755 1201 CLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVIDSDMVLLLSHGII 1267 (1300)
Q Consensus 1201 ~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~~D~v~vl~~G~i 1267 (1300)
+||||++++|++|||||||++||+++.+.+.+.|++..+ ++|||++||+++....||+|++|++|++
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 999999999999999999999999999999999988653 6999999999986655999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-37 Score=356.04 Aligned_cols=205 Identities=26% Similarity=0.423 Sum_probs=171.1
Q ss_pred ceEEEEeEEEEecCCC--CCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC------------
Q 000755 615 TAIEIVDGNFAWDISS--NNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG------------ 680 (1300)
Q Consensus 615 ~~I~i~~~~fs~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g------------ 680 (1300)
..|+++|++|+|+... ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 4699999999997422 24699999999999999999999999999999999999999999999875
Q ss_pred -----------------eEEEEecCC--cCCCCCHHHHHhcCCC---CCHHH----HHHHHHHhcchHHHhhccCCCccc
Q 000755 681 -----------------TKAYVAQSP--WIQSGNIEDNILFGKP---MDREK----YDRVLEACSLKKDLEILSFGDQTV 734 (1300)
Q Consensus 681 -----------------~~ayv~Q~~--~l~~~Ti~eNI~fg~~---~~~~~----~~~vl~~~~l~~dl~~l~~Gd~t~ 734 (1300)
.++||+|+| ++++.|++|||.|+.. .+.++ ..+.++.+++.. ..
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~~ 169 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDD----------SY 169 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCCh----------hH
Confidence 158999998 7889999999998742 23222 223333333321 23
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhh-cCCcEEEEEecCCCccc-cCCEEEE
Q 000755 735 IGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LRSKTVIYVTHQVEFLP-AADLILV 812 (1300)
Q Consensus 735 ige~g~~LSGGQkqRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~-l~~~TvIlvtH~~~~l~-~~d~i~~ 812 (1300)
.++.+.+||||||||++|||||.++|+++||||||++||+.+++.+++ ++..+ .+++|+|+|||+++++. .||+|++
T Consensus 170 ~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~-~L~~l~~~g~TiiivtHd~~~~~~~adri~v 248 (320)
T PRK13631 170 LERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQ-LILDAKANNKTVFVITHTMEHVLEVADEVIV 248 (320)
T ss_pred hcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHH-HHHHHHHCCCEEEEEecCHHHHHHhCCEEEE
Confidence 567788999999999999999999999999999999999999988875 44443 35899999999999875 5999999
Q ss_pred EeCCeEEEecChHHHHhc
Q 000755 813 MKDGKITQAGKYNDILNS 830 (1300)
Q Consensus 813 l~~G~i~~~g~~~~l~~~ 830 (1300)
|++|++++.|+++++...
T Consensus 249 l~~G~i~~~g~~~~~~~~ 266 (320)
T PRK13631 249 MDKGKILKTGTPYEIFTD 266 (320)
T ss_pred EECCEEEEeCCHHHHhcC
Confidence 999999999999988654
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=343.23 Aligned_cols=228 Identities=26% Similarity=0.416 Sum_probs=188.4
Q ss_pred EEEEeeeeeeCCCC--CcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCC-C----CcceEEECCeecCCCCHHH
Q 000755 1055 VDILNLQVRYAPHL--PLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVE-P----TAGEIVIDGINISSIGLHD 1127 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~--~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~-p----~~G~I~idg~di~~i~~~~ 1127 (1300)
++++|+++.|.... ..+++||||++++||++||||.|||||||+.++|+|+++ | .+|+|.++|.|+.+++.++
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 68999999997542 368999999999999999999999999999999999998 3 6799999999999999875
Q ss_pred Hh----cccEEEcCCCCC-Ccc--cHHHhc----CCCCCC-C----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCC
Q 000755 1128 LR----SRLSIIPQDPTM-FEG--TVRNNL----DPLEEY-K----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGEN 1191 (1300)
Q Consensus 1128 lr----~~i~~vpQ~~~l-f~g--Tvr~Nl----~~~~~~-~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~ 1191 (1300)
+| ++|++|||||.- |+- ||.+-+ ...... + .+...+.|+.+++.+--+ .+..-...
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~--------~~~~YPhe 153 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPER--------RLKSYPHE 153 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHH--------HHhhCCcc
Confidence 43 379999999842 322 555443 211111 1 235778899999865311 12223467
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc--CCcEEEEEeCChhhhhc-cCEEEEEeCCEEE
Q 000755 1192 WSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF--SDCTVITIAHRITSVID-SDMVLLLSHGIIE 1268 (1300)
Q Consensus 1192 LSgGqrQrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~ 1268 (1300)
||||||||+.||.||+.+|++||.||||++||..+.++|.+.|++.. .+.|+|+||||+..+.. ||||+||.+|+|+
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iV 233 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIV 233 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEE
Confidence 89999999999999999999999999999999999999999999866 37999999999999988 9999999999999
Q ss_pred EecChhhHHhcCCChHHHHHHH
Q 000755 1269 EYDSPTKLLENKSSSFAQLVAE 1290 (1300)
Q Consensus 1269 e~g~~~~l~~~~~~~f~~l~~~ 1290 (1300)
|.|+.+++++++...|.+..-.
T Consensus 234 E~g~~~~i~~~P~HPYT~~Ll~ 255 (316)
T COG0444 234 EEGPVEEIFKNPKHPYTRGLLN 255 (316)
T ss_pred EeCCHHHHhcCCCChHHHHHHH
Confidence 9999999999988777665443
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-37 Score=343.25 Aligned_cols=199 Identities=31% Similarity=0.406 Sum_probs=166.7
Q ss_pred EEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC----------------
Q 000755 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG---------------- 680 (1300)
Q Consensus 617 I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g---------------- 680 (1300)
++++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 1 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFG---GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 46899999996 35799999999999999999999999999999999999999999999876
Q ss_pred eEEEEecCCcCCCC-CHHHHHhcCCC----CCH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHH
Q 000755 681 TKAYVAQSPWIQSG-NIEDNILFGKP----MDR----EKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQ 751 (1300)
Q Consensus 681 ~~ayv~Q~~~l~~~-Ti~eNI~fg~~----~~~----~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRia 751 (1300)
.++|++|++.++.. |++||+.++.. .+. ++..++++.+++... ......+||||||||++
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~ 146 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGA-----------EDLYPAELSGGMKKRVA 146 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHHHHH
Confidence 26899999988875 99999987632 222 233444555544322 23455689999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHHH
Q 000755 752 IARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL--RSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDIL 828 (1300)
Q Consensus 752 LARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l--~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 828 (1300)
||||+..+|+++||||||++||+.+...+.+ .+..+. .++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 225 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDD-LIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELR 225 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHH-HHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHc
Confidence 9999999999999999999999999888875 454443 37899999999998765 9999999999999999998876
Q ss_pred hc
Q 000755 829 NS 830 (1300)
Q Consensus 829 ~~ 830 (1300)
..
T Consensus 226 ~~ 227 (235)
T cd03261 226 AS 227 (235)
T ss_pred CC
Confidence 54
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-37 Score=342.82 Aligned_cols=208 Identities=29% Similarity=0.421 Sum_probs=179.6
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccE
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLS 1133 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~ 1133 (1300)
.++++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++| +..++
T Consensus 4 ~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i~ 70 (251)
T PRK09544 4 LVSLENVSVSFGQ--RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRIG 70 (251)
T ss_pred EEEEeceEEEECC--ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCEE
Confidence 5899999999975 3599999999999999999999999999999999999999999999987 34799
Q ss_pred EEcCCCCCCc---ccHHHhcCCCCCCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCC
Q 000755 1134 IIPQDPTMFE---GTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKS 1210 (1300)
Q Consensus 1134 ~vpQ~~~lf~---gTvr~Nl~~~~~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~ 1210 (1300)
|+||++.++. .|+++|+.......++++.++++.+++.+..... ...||||||||++||||++++|
T Consensus 71 ~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LSgGq~qrv~laral~~~p 139 (251)
T PRK09544 71 YVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAP-----------MQKLSGGETQRVLLARALLNRP 139 (251)
T ss_pred EeccccccccccChhHHHHHhccccccHHHHHHHHHHcCChHHHhCC-----------hhhCCHHHHHHHHHHHHHhcCC
Confidence 9999997764 3888887543344567788999999987655432 3578999999999999999999
Q ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHHhcCCChHHHH
Q 000755 1211 KVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENKSSSFAQL 1287 (1300)
Q Consensus 1211 ~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~~~~~~~f~~l 1287 (1300)
++|||||||++||+.+.+.+.+.|++..+ ++|||++||+++.+.. ||+|++|++ ++++.|+++++.++ ..+.++
T Consensus 140 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~~--~~~~~~ 216 (251)
T PRK09544 140 QLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSLH--PEFISM 216 (251)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhCC--HHHHHH
Confidence 99999999999999999999999987643 7899999999999977 999999965 79999999998743 345554
Q ss_pred H
Q 000755 1288 V 1288 (1300)
Q Consensus 1288 ~ 1288 (1300)
+
T Consensus 217 ~ 217 (251)
T PRK09544 217 F 217 (251)
T ss_pred h
Confidence 4
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-37 Score=335.93 Aligned_cols=221 Identities=27% Similarity=0.400 Sum_probs=193.5
Q ss_pred eEEEEeeeeeeCCCC----------------------CcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcc
Q 000755 1054 EVDILNLQVRYAPHL----------------------PLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAG 1111 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~----------------------~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G 1111 (1300)
.|+++||++-|+.+. ..-++|+||+|+.||+..|.|-||||||||++++.|+++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 578888888776432 1347899999999999999999999999999999999999999
Q ss_pred eEEECCeecCCCCHHHHh----cccEEEcCCCCCCcc-cHHHhcCCCCC---CC----HHHHHHHHHHcCCcHHHHhhcC
Q 000755 1112 EIVIDGINISSIGLHDLR----SRLSIIPQDPTMFEG-TVRNNLDPLEE---YK----DEEIWEALDKCQLGDEVRNKEG 1179 (1300)
Q Consensus 1112 ~I~idg~di~~i~~~~lr----~~i~~vpQ~~~lf~g-Tvr~Nl~~~~~---~~----d~~i~~~l~~~~l~~~i~~~~~ 1179 (1300)
+|++||.|+..++.++|| ++++.|+|..-||+. ||.+|..+.-+ .. .+...++|+.+||.++-.+.|+
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~ 163 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPN 163 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcc
Confidence 999999999999988764 479999999999876 99999876422 22 3446779999999999887775
Q ss_pred CCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhc-c
Q 000755 1180 KLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVID-S 1256 (1300)
Q Consensus 1180 gLdt~v~e~G~~LSgGqrQrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~-~ 1256 (1300)
.||||+|||+.|||||..+|+||+||||+|+|||--+..+|+-|.+..+ ++||++||||+++... .
T Consensus 164 -----------eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 164 -----------ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred -----------cccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 5699999999999999999999999999999999999999998877543 6899999999999988 9
Q ss_pred CEEEEEeCCEEEEecChhhHHhcCCChHH
Q 000755 1257 DMVLLLSHGIIEEYDSPTKLLENKSSSFA 1285 (1300)
Q Consensus 1257 D~v~vl~~G~i~e~g~~~~l~~~~~~~f~ 1285 (1300)
|||..|++|+|+..|+|+|++.+|...|-
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~~PAndYV 261 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILLNPANDYV 261 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHcCccHHHH
Confidence 99999999999999999999988765543
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-37 Score=337.51 Aligned_cols=199 Identities=24% Similarity=0.348 Sum_probs=169.2
Q ss_pred EEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCC----CHHHHhcc
Q 000755 1056 DILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSI----GLHDLRSR 1131 (1300)
Q Consensus 1056 ~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i----~~~~lr~~ 1131 (1300)
++ ||+++|++. .+ |+||+|++ |++||+|+||||||||+++|+|+++|++|+|.++|.++... +....|++
T Consensus 3 ~~-~l~~~~~~~--~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 76 (214)
T cd03297 3 CV-DIEKRLPDF--TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRK 76 (214)
T ss_pred ee-eeeEecCCe--ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhc
Confidence 44 899999864 24 99999999 99999999999999999999999999999999999988643 23456788
Q ss_pred cEEEcCCCCCCcc-cHHHhcCCCC-CC----CHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHH
Q 000755 1132 LSIIPQDPTMFEG-TVRNNLDPLE-EY----KDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRV 1205 (1300)
Q Consensus 1132 i~~vpQ~~~lf~g-Tvr~Nl~~~~-~~----~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARa 1205 (1300)
++|+||++.+|.. |+++|+.... .. .++++.++++.+++.+... ....+||||||||++||||
T Consensus 77 i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~a 145 (214)
T cd03297 77 IGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLN-----------RYPAQLSGGEKQRVALARA 145 (214)
T ss_pred EEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhh-----------cCcccCCHHHHHHHHHHHH
Confidence 9999999998864 9999986421 11 2335667788887754433 3456799999999999999
Q ss_pred HccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhc-cCEEEEEeCCEEEEec
Q 000755 1206 LLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGIIEEYD 1271 (1300)
Q Consensus 1206 ll~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g 1271 (1300)
++.+|++|||||||++||+.+.+.+.+.|++..+ ++|||++||+++.+.. ||+|++|++|++++.|
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 146 LAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999998643 6899999999999976 9999999999998865
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-37 Score=331.80 Aligned_cols=185 Identities=25% Similarity=0.350 Sum_probs=163.1
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcC--CCCCcceEEECCeecCCCCHHHH-hcc
Q 000755 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRI--VEPTAGEIVIDGINISSIGLHDL-RSR 1131 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl--~~p~~G~I~idg~di~~i~~~~l-r~~ 1131 (1300)
++++|++++|++ .++|+|+||++++||++||+|+||||||||+++|+|+ ++|++|+|.+||.++...+.... |.+
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (200)
T cd03217 1 LEIKDLHVSVGG--KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLG 78 (200)
T ss_pred CeEEEEEEEeCC--EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCc
Confidence 468999999974 3599999999999999999999999999999999999 58999999999999988776554 456
Q ss_pred cEEEcCCCCCCcc-cHHHhcCCCCCCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCC
Q 000755 1132 LSIIPQDPTMFEG-TVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKS 1210 (1300)
Q Consensus 1132 i~~vpQ~~~lf~g-Tvr~Nl~~~~~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~ 1210 (1300)
++|+||++.+|++ |+++|+. . ...+||+|||||++||||++++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~l~------------------------~-----------~~~~LS~G~~qrv~laral~~~p 123 (200)
T cd03217 79 IFLAFQYPPEIPGVKNADFLR------------------------Y-----------VNEGFSGGEKKRNEILQLLLLEP 123 (200)
T ss_pred EEEeecChhhccCccHHHHHh------------------------h-----------ccccCCHHHHHHHHHHHHHhcCC
Confidence 9999999998876 6666550 0 11468999999999999999999
Q ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHhcC-CcEEEEEeCChhhhh--ccCEEEEEeCCEEEEecChhhHH
Q 000755 1211 KVLVLDEATASVDTATDNLIQQTLRQHFS-DCTVITIAHRITSVI--DSDMVLLLSHGIIEEYDSPTKLL 1277 (1300)
Q Consensus 1211 ~iLlLDEpTs~lD~~t~~~i~~~l~~~~~-~~Tvi~iaHrl~~i~--~~D~v~vl~~G~i~e~g~~~~l~ 1277 (1300)
++++|||||++||+.+...+.+.|++..+ ++|+|++||+++.+. .||++++|++|++++.| +.++.
T Consensus 124 ~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~~ 192 (200)
T cd03217 124 DLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKELA 192 (200)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHHH
Confidence 99999999999999999999999998653 689999999999998 59999999999999999 55554
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=346.65 Aligned_cols=209 Identities=24% Similarity=0.336 Sum_probs=175.3
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccE
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLS 1133 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~ 1133 (1300)
.|+++|++++|+++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.. ...+.+++
T Consensus 6 ~l~~~~l~~~~~~~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i~ 81 (272)
T PRK15056 6 GIVVNDVTVTWRNG-HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLVA 81 (272)
T ss_pred eEEEEeEEEEecCC-cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceEE
Confidence 58999999999643 359999999999999999999999999999999999999999999999998742 11234699
Q ss_pred EEcCCCCC---CcccHHHhcCCC--C---------CCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHH
Q 000755 1134 IIPQDPTM---FEGTVRNNLDPL--E---------EYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQL 1199 (1300)
Q Consensus 1134 ~vpQ~~~l---f~gTvr~Nl~~~--~---------~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQr 1199 (1300)
|+||++.+ +..++++|+... . ...++.+.++++.+++.+...+ ...+||||||||
T Consensus 82 ~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgG~~qr 150 (272)
T PRK15056 82 YVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHR-----------QIGELSGGQKKR 150 (272)
T ss_pred EeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcC-----------CcccCCHHHHHH
Confidence 99999865 345788887421 0 0112346678888888654322 235699999999
Q ss_pred HHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHH
Q 000755 1200 VCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLL 1277 (1300)
Q Consensus 1200 l~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~ 1277 (1300)
++|||||+++|++|||||||++||+.+.+.+.+.|++.. +++|||++||+++.+.. ||+++++ +|++++.|+++++.
T Consensus 151 v~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~ 229 (272)
T PRK15056 151 VFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTF 229 (272)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhcc
Confidence 999999999999999999999999999999999998864 37899999999999876 9999777 89999999999986
Q ss_pred h
Q 000755 1278 E 1278 (1300)
Q Consensus 1278 ~ 1278 (1300)
+
T Consensus 230 ~ 230 (272)
T PRK15056 230 T 230 (272)
T ss_pred C
Confidence 4
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=335.12 Aligned_cols=198 Identities=48% Similarity=0.886 Sum_probs=178.3
Q ss_pred EEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC-----------------
Q 000755 618 EIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG----------------- 680 (1300)
Q Consensus 618 ~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g----------------- 680 (1300)
.+.|++|+|+.. .++++|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 567899999733 5799999999999999999999999999999999999999999999865
Q ss_pred eEEEEecCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHHHHHccCC
Q 000755 681 TKAYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDA 760 (1300)
Q Consensus 681 ~~ayv~Q~~~l~~~Ti~eNI~fg~~~~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLARAly~~~ 760 (1300)
.++|++|+|.+++.|++||+.++.+.+.++.+++++.+++.+.++.+|.|++|.++....+||||||||++||||++.+|
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p 159 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNT 159 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCC
Confidence 26899999999999999999998776677778899999999889999999999999999999999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHH-HHHhhc-CCcEEEEEecCCCccccCCEEEEEeCCe
Q 000755 761 DIYLFDDPFSAVDAHTGSHLFKE-VLLGLL-RSKTVIYVTHQVEFLPAADLILVMKDGK 817 (1300)
Q Consensus 761 ~illLDep~saLD~~t~~~i~~~-~~~~~l-~~~TvIlvtH~~~~l~~~d~i~~l~~G~ 817 (1300)
+++||||||++||+.+...+.+. .+.... .++|+|++||+.+.+..||++++|++|.
T Consensus 160 ~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 160 NIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999998888763 444332 3689999999999988899999999884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-37 Score=357.12 Aligned_cols=202 Identities=26% Similarity=0.392 Sum_probs=171.8
Q ss_pred ceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe-----------EE
Q 000755 615 TAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KA 683 (1300)
Q Consensus 615 ~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-----------~a 683 (1300)
..|+++|++++|. +.++|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.++|. ++
T Consensus 5 ~~l~~~~l~~~~~---~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig 81 (351)
T PRK11432 5 NFVVLKNITKRFG---SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDIC 81 (351)
T ss_pred cEEEEEeEEEEEC---CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 3699999999996 356899999999999999999999999999999999999999999999883 69
Q ss_pred EEecCCcCCC-CCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHHHH
Q 000755 684 YVAQSPWIQS-GNIEDNILFGKP---MDR----EKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARA 755 (1300)
Q Consensus 684 yv~Q~~~l~~-~Ti~eNI~fg~~---~~~----~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLARA 755 (1300)
||+|++.+|. .|++|||.|+.. .+. ++.+++++..++... ......+|||||||||+||||
T Consensus 82 ~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~-----------~~r~~~~LSgGq~QRVaLARa 150 (351)
T PRK11432 82 MVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGF-----------EDRYVDQISGGQQQRVALARA 150 (351)
T ss_pred EEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHHHHHHHHH
Confidence 9999999985 599999999743 222 344455555555432 244567899999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcC--CcEEEEEecCCCccc-cCCEEEEEeCCeEEEecChHHHHhcC
Q 000755 756 LYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLR--SKTVIYVTHQVEFLP-AADLILVMKDGKITQAGKYNDILNSG 831 (1300)
Q Consensus 756 ly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~--~~TvIlvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 831 (1300)
|+.+|+++|||||||+||+.++..+.+. +..+.+ ++|+|+|||+.+.+. .||+|++|++|+|++.|+++++....
T Consensus 151 L~~~P~lLLLDEP~s~LD~~~r~~l~~~-l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p 228 (351)
T PRK11432 151 LILKPKVLLFDEPLSNLDANLRRSMREK-IRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQP 228 (351)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 9999999999999999999999988654 444433 789999999999865 59999999999999999999987643
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-37 Score=338.36 Aligned_cols=203 Identities=26% Similarity=0.333 Sum_probs=169.4
Q ss_pred EEEEeeeeeeCCC--CCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCC---CCcceEEECCeecCCCCHHHHh
Q 000755 1055 VDILNLQVRYAPH--LPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVE---PTAGEIVIDGINISSIGLHDLR 1129 (1300)
Q Consensus 1055 i~~~~v~~~y~~~--~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~---p~~G~I~idg~di~~i~~~~lr 1129 (1300)
++++||+++|+.. .+++|+|+||+|++||++||+||||||||||+++|.|+++ |++|+|.++|.++. ....|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 5789999999765 3679999999999999999999999999999999999999 99999999999875 34678
Q ss_pred cccEEEcCCCCCCcc-cHHHhcCCCC-----CCCHH-----HHHH-HHHHcCCcHHHHhhcCCCccccccCCCCCChhHH
Q 000755 1130 SRLSIIPQDPTMFEG-TVRNNLDPLE-----EYKDE-----EIWE-ALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQR 1197 (1300)
Q Consensus 1130 ~~i~~vpQ~~~lf~g-Tvr~Nl~~~~-----~~~d~-----~i~~-~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqr 1197 (1300)
++++|+||++.+|.+ |+++|+.+.. ....+ .+.+ .++.+++.+ .......+||+|||
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~ 149 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTR-----------IGGNLVKGISGGER 149 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchh-----------hhcccccCcCHHHH
Confidence 889999999999987 9999996321 11111 1222 344444322 22334568999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCCh-hhhhc-cCEEEEEeCCEEEEec
Q 000755 1198 QLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRI-TSVID-SDMVLLLSHGIIEEYD 1271 (1300)
Q Consensus 1198 Qrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl-~~i~~-~D~v~vl~~G~i~e~g 1271 (1300)
||++|||||+++|++|||||||++||+.+...+.+.|++.. .+.|+|++||++ +.+.. ||+|++|++|++++.|
T Consensus 150 qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999999999864 468999999998 46665 9999999999999865
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-37 Score=332.14 Aligned_cols=190 Identities=24% Similarity=0.300 Sum_probs=161.6
Q ss_pred eEEEEeeeeeeCCC--CCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCC---CCcceEEECCeecCCCCHHHH
Q 000755 1054 EVDILNLQVRYAPH--LPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVE---PTAGEIVIDGINISSIGLHDL 1128 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~--~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~---p~~G~I~idg~di~~i~~~~l 1128 (1300)
.+.++|+++.|+.. ..++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++...+ ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 47899999999753 4579999999999999999999999999999999999999 89999999999987664 456
Q ss_pred hcccEEEcCCCCCCcc-cHHHhcCCCCCCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHc
Q 000755 1129 RSRLSIIPQDPTMFEG-TVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLL 1207 (1300)
Q Consensus 1129 r~~i~~vpQ~~~lf~g-Tvr~Nl~~~~~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall 1207 (1300)
|++++|+||++.+|.+ |+++|+.+.... . . .+....||+|||||++|||||+
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~---------~--------------~----~~~~~~LS~Ge~qrl~laral~ 134 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALRC---------K--------------G----NEFVRGISGGERKRVSIAEALV 134 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhhh---------c--------------c----ccchhhCCHHHHHHHHHHHHHh
Confidence 7789999999988875 999998642110 0 1 2234579999999999999999
Q ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEE-eCChhhhhc-cCEEEEEeCCEEEEec
Q 000755 1208 KKSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITI-AHRITSVID-SDMVLLLSHGIIEEYD 1271 (1300)
Q Consensus 1208 ~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~i-aHrl~~i~~-~D~v~vl~~G~i~e~g 1271 (1300)
++|++|||||||++||+.+.+.+.+.|++..+ +.|+|++ +|+.+.+.. ||+|++|++|++++.|
T Consensus 135 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 135 SRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred hCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 99999999999999999999999999998653 4666665 455677765 9999999999998764
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-37 Score=331.05 Aligned_cols=182 Identities=27% Similarity=0.398 Sum_probs=160.9
Q ss_pred eEEEEeeeeeeCCC----CCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCC--CCCcceEEECCeecCCCCHHH
Q 000755 1054 EVDILNLQVRYAPH----LPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIV--EPTAGEIVIDGINISSIGLHD 1127 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~----~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~--~p~~G~I~idg~di~~i~~~~ 1127 (1300)
.|+++|++++|+.. ..++|+|+||++++||+++|+|+||||||||+++|+|++ +|++|+|.+||.++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 58999999999752 246999999999999999999999999999999999999 9999999999999864 36
Q ss_pred HhcccEEEcCCCCCCcc-cHHHhcCCCCCCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHH
Q 000755 1128 LRSRLSIIPQDPTMFEG-TVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVL 1206 (1300)
Q Consensus 1128 lr~~i~~vpQ~~~lf~g-Tvr~Nl~~~~~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARal 1206 (1300)
.|++++|+||++.+|.+ |+++|+.... ... .||+|||||++|||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~------------~~~---------------------~LS~G~~qrv~laral 126 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAA------------KLR---------------------GLSGGERKRVSIALEL 126 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHH------------Hhc---------------------cCCHHHHHHHHHHHHH
Confidence 67889999999988875 9999984210 000 6899999999999999
Q ss_pred ccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChh-hhhc-cCEEEEEeCCEEEEec
Q 000755 1207 LKKSKVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRIT-SVID-SDMVLLLSHGIIEEYD 1271 (1300)
Q Consensus 1207 l~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~-~i~~-~D~v~vl~~G~i~e~g 1271 (1300)
+++|++++|||||++||+.+.+.+.+.|++.. +++|+|++||+++ .+.+ ||+|++|++|++++.|
T Consensus 127 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 127 VSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999865 4789999999997 5665 9999999999998764
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=335.36 Aligned_cols=204 Identities=28% Similarity=0.460 Sum_probs=177.7
Q ss_pred cceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC-------------
Q 000755 614 ETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG------------- 680 (1300)
Q Consensus 614 ~~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g------------- 680 (1300)
...++++|++++|+.....++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 4569999999999743234799999999999999999999999999999999999999999999987
Q ss_pred eEEEEecCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHHHHHccC
Q 000755 681 TKAYVAQSPWIQSGNIEDNILFGKP-MDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQD 759 (1300)
Q Consensus 681 ~~ayv~Q~~~l~~~Ti~eNI~fg~~-~~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLARAly~~ 759 (1300)
.++|++|++.++..|++||+.++.. ....++.+..+...+.+.++.++.|.++.++++..+||||||||++||||++++
T Consensus 89 ~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~ 168 (226)
T cd03248 89 KVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRN 168 (226)
T ss_pred hEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 2699999999999999999998754 233333444455567778888888888889999999999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCccccCCEEEEEeCCeE
Q 000755 760 ADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKI 818 (1300)
Q Consensus 760 ~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~~d~i~~l~~G~i 818 (1300)
|+++||||||++||+++.+.+.+ .+..+.+++|+|++||+++.+..||+|++|++|++
T Consensus 169 p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 169 PQVLILDEATSALDAESEQQVQQ-ALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCEEEEeCCcccCCHHHHHHHHH-HHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 99999999999999999888865 55555567899999999999888999999999974
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=348.43 Aligned_cols=202 Identities=25% Similarity=0.436 Sum_probs=170.6
Q ss_pred EEEEeEEEEecCCCC--CCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe-------------
Q 000755 617 IEIVDGNFAWDISSN--NPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------- 681 (1300)
Q Consensus 617 I~i~~~~fs~~~~~~--~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~------------- 681 (1300)
|+++|++|+|+.... +++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++|.
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 789999999963221 36999999999999999999999999999999999999999999999872
Q ss_pred ----EEEEecCC--cCCCCCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHH
Q 000755 682 ----KAYVAQSP--WIQSGNIEDNILFGKP---MDR----EKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQ 748 (1300)
Q Consensus 682 ----~ayv~Q~~--~l~~~Ti~eNI~fg~~---~~~----~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkq 748 (1300)
++||+|+| .++..|+.|||.|+.. .+. +++.++++..++..++ ......+|||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~----------~~~~~~~LSgGqkq 151 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEF----------WEKSPFELSGGQMR 151 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhh----------ccCCcccCCHHHHH
Confidence 58999998 7888999999998743 222 2455555555553222 24566789999999
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCCCccc-cCCEEEEEeCCeEEEecChHH
Q 000755 749 RIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-RSKTVIYVTHQVEFLP-AADLILVMKDGKITQAGKYND 826 (1300)
Q Consensus 749 RiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l-~~~TvIlvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~ 826 (1300)
|++|||||+.+|+++||||||++||+.+...+.+ .+..+. +++|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 152 rvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~-~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~ 230 (288)
T PRK13643 152 RVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQ-LFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSD 230 (288)
T ss_pred HHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHH-HHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999888875 454443 4799999999999885 599999999999999999999
Q ss_pred HHh
Q 000755 827 ILN 829 (1300)
Q Consensus 827 l~~ 829 (1300)
+..
T Consensus 231 ~~~ 233 (288)
T PRK13643 231 VFQ 233 (288)
T ss_pred HHc
Confidence 865
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=348.42 Aligned_cols=205 Identities=26% Similarity=0.435 Sum_probs=171.4
Q ss_pred eEEEEeEEEEecCCC--CCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC-------------
Q 000755 616 AIEIVDGNFAWDISS--NNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG------------- 680 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g------------- 680 (1300)
.++++|++++|+... .+++|+|+||+|++||+++|+|+||||||||+++|+|.++|++|+|.++|
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 378999999996322 24799999999999999999999999999999999999999999999877
Q ss_pred --eEEEEecCC--cCCCCCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHH
Q 000755 681 --TKAYVAQSP--WIQSGNIEDNILFGKP---MDR----EKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQR 749 (1300)
Q Consensus 681 --~~ayv~Q~~--~l~~~Ti~eNI~fg~~---~~~----~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqR 749 (1300)
.++||+|+| .+++.|++|||.|+.. .+. ++.+++++.+++. +.+..+.....||||||||
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~---------~~~~~~~~~~~LSgGq~qr 152 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLD---------YEDYKDKSPFELSGGQKRR 152 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCC---------chhhccCCcccCCHHHHHH
Confidence 258999998 5778999999998642 232 2344555555553 1123456678999999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEecCCCccc-cCCEEEEEeCCeEEEecChHH
Q 000755 750 IQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL--RSKTVIYVTHQVEFLP-AADLILVMKDGKITQAGKYND 826 (1300)
Q Consensus 750 iaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l--~~~TvIlvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~ 826 (1300)
++|||||+.+|+++||||||++||+.+...+++ ++..+. .++|+|+|||+++.+. .||+|++|++|++++.|+.++
T Consensus 153 v~iAraL~~~P~llllDEPt~gLD~~~~~~l~~-~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 231 (287)
T PRK13637 153 VAIAGVVAMEPKILILDEPTAGLDPKGRDEILN-KIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPRE 231 (287)
T ss_pred HHHHHHHHcCCCEEEEECCccCCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999988865 555543 3789999999999875 599999999999999999998
Q ss_pred HHhc
Q 000755 827 ILNS 830 (1300)
Q Consensus 827 l~~~ 830 (1300)
+...
T Consensus 232 ~~~~ 235 (287)
T PRK13637 232 VFKE 235 (287)
T ss_pred HHhC
Confidence 8653
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-37 Score=327.32 Aligned_cols=172 Identities=27% Similarity=0.466 Sum_probs=155.7
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCH-HHHhccc
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGL-HDLRSRL 1132 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~-~~lr~~i 1132 (1300)
.++++|++++| +|+++||++++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+. ...|+++
T Consensus 4 ~l~~~~l~~~~------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (182)
T cd03215 4 VLEVRGLSVKG------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGI 77 (182)
T ss_pred EEEEeccEEEe------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCe
Confidence 48999999998 7999999999999999999999999999999999999999999999999987764 3467789
Q ss_pred EEEcCCC---CCC-cccHHHhcCCCCCCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHcc
Q 000755 1133 SIIPQDP---TMF-EGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLK 1208 (1300)
Q Consensus 1133 ~~vpQ~~---~lf-~gTvr~Nl~~~~~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~ 1208 (1300)
+|+||++ .++ ..|+++|+..... ||+|||||++||||+++
T Consensus 78 ~~~~q~~~~~~~~~~~t~~e~l~~~~~------------------------------------LS~G~~qrl~la~al~~ 121 (182)
T cd03215 78 AYVPEDRKREGLVLDLSVAENIALSSL------------------------------------LSGGNQQKVVLARWLAR 121 (182)
T ss_pred EEecCCcccCcccCCCcHHHHHHHHhh------------------------------------cCHHHHHHHHHHHHHcc
Confidence 9999995 344 4699999854210 79999999999999999
Q ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhc-cCEEEEEeCCEE
Q 000755 1209 KSKVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGII 1267 (1300)
Q Consensus 1209 ~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i 1267 (1300)
+|++|+|||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.+ ||+|++|++|++
T Consensus 122 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 122 DPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred CCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999999864 47899999999999988 999999999974
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-37 Score=358.93 Aligned_cols=190 Identities=28% Similarity=0.376 Sum_probs=161.8
Q ss_pred CCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC-----------------eEEEEecCCcCCC
Q 000755 631 NNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-----------------TKAYVAQSPWIQS 693 (1300)
Q Consensus 631 ~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g-----------------~~ayv~Q~~~l~~ 693 (1300)
.+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| .++||+|++++|.
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~ 84 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFP 84 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCC
Confidence 35689999999999999999999999999999999999999999999987 3799999999996
Q ss_pred -CCHHHHHhcCCCC---CH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCEEEE
Q 000755 694 -GNIEDNILFGKPM---DR----EKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLF 765 (1300)
Q Consensus 694 -~Ti~eNI~fg~~~---~~----~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLARAly~~~~illL 765 (1300)
.||+|||.|+.++ +. ++..++++..+|.. ..++...+|||||||||+|||||+++|+|+||
T Consensus 85 ~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~-----------~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 85 HMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEE-----------YEHRYPDELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCch-----------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 5999999987542 22 23334444444433 34566779999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCCCccc-cCCEEEEEeCCeEEEecChHHHHhcC
Q 000755 766 DDPFSAVDAHTGSHLFKEVLLGLL-RSKTVIYVTHQVEFLP-AADLILVMKDGKITQAGKYNDILNSG 831 (1300)
Q Consensus 766 Dep~saLD~~t~~~i~~~~~~~~l-~~~TvIlvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 831 (1300)
|||||+||+.+++.+++.+..... .++|+|+|||+++.+. .||+|++|++|++++.|++++++...
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p 221 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNP 221 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCc
Confidence 999999999999999876554322 3899999999999865 59999999999999999999988653
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-37 Score=337.99 Aligned_cols=197 Identities=29% Similarity=0.436 Sum_probs=164.7
Q ss_pred EEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccc-----cCCccEEEEcCe----------
Q 000755 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEV-----PKISGTLKLCGT---------- 681 (1300)
Q Consensus 617 I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~-----~~~~G~i~~~g~---------- 681 (1300)
|+++|++++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|.+ +|++|+|.++|.
T Consensus 1 i~~~~l~~~~~---~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYG---DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcC---CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 46899999996 247999999999999999999999999999999999999 999999998772
Q ss_pred -----EEEEecCCcCCCCCHHHHHhcCCCC----C----HHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHH
Q 000755 682 -----KAYVAQSPWIQSGNIEDNILFGKPM----D----REKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQ 748 (1300)
Q Consensus 682 -----~ayv~Q~~~l~~~Ti~eNI~fg~~~----~----~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkq 748 (1300)
++|++|++.+++.|++||+.++... . +++..++++.+++.+.+...++ +.+|||||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~q 148 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQ 148 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHH
Confidence 6899999998888999999876321 1 2344555666666543322110 5789999999
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHH
Q 000755 749 RIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYND 826 (1300)
Q Consensus 749 RiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 826 (1300)
|++||||++.+|+++||||||++||+.+.+.+++ .+....+.+|+|++||+++.+.. ||+|++|++|++++.|+.++
T Consensus 149 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 149 RLCLARALANEPEVLLLDEPTSALDPISTAKIEE-LIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 9999999999999999999999999999988875 55554444899999999998765 99999999999999988654
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=347.91 Aligned_cols=204 Identities=27% Similarity=0.451 Sum_probs=171.7
Q ss_pred eEEEEeEEEEecCCC--CCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe------------
Q 000755 616 AIEIVDGNFAWDISS--NNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------ 681 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~------------ 681 (1300)
.++++|++|+|+... ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999996322 246999999999999999999999999999999999999999999999873
Q ss_pred -----EEEEecCC--cCCCCCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHH
Q 000755 682 -----KAYVAQSP--WIQSGNIEDNILFGKP---MDR----EKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQK 747 (1300)
Q Consensus 682 -----~ayv~Q~~--~l~~~Ti~eNI~fg~~---~~~----~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQk 747 (1300)
++||+|+| .+++.|++|||.|+.. .+. ++.+++++.++|..++ ......+||||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~~~~LSgGq~ 151 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEEL----------LARSPFELSGGQM 151 (290)
T ss_pred HHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhh----------hhCCcccCCHHHH
Confidence 68999998 5788899999998742 222 3455666666664332 1345678999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecCh
Q 000755 748 QRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL--RSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKY 824 (1300)
Q Consensus 748 qRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l--~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 824 (1300)
||++|||||+.+|+++||||||++||+.+...+.+ ++..+. .+.|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 152 qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~-~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~ 230 (290)
T PRK13634 152 RRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMME-MFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTP 230 (290)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999888865 455443 37899999999998764 999999999999999999
Q ss_pred HHHHhc
Q 000755 825 NDILNS 830 (1300)
Q Consensus 825 ~~l~~~ 830 (1300)
+++.+.
T Consensus 231 ~~~~~~ 236 (290)
T PRK13634 231 REIFAD 236 (290)
T ss_pred HHHhcC
Confidence 888653
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=336.84 Aligned_cols=206 Identities=25% Similarity=0.345 Sum_probs=171.1
Q ss_pred ceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCC----CcceEEECCeecCCCCHHHHhcccEEEcCCCC-CC-c-
Q 000755 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEP----TAGEIVIDGINISSIGLHDLRSRLSIIPQDPT-MF-E- 1143 (1300)
Q Consensus 1071 vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p----~~G~I~idg~di~~i~~~~lr~~i~~vpQ~~~-lf-~- 1143 (1300)
+|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++... ...+++++|+||++. .| +
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 57999999999999999999999999999999999999 899999999998654 222458999999995 34 3
Q ss_pred ccHHHhcCC----CCCC---CHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 000755 1144 GTVRNNLDP----LEEY---KDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLD 1216 (1300)
Q Consensus 1144 gTvr~Nl~~----~~~~---~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~~iLlLD 1216 (1300)
.|+.+|+.. .... .++++.++++.+++.+. +......+.+||||||||++||||++++|+|||||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLD 150 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDP--------EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIAD 150 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCch--------HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 488888631 1111 13457788888887531 11223345689999999999999999999999999
Q ss_pred CCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHHhcCCChHHH
Q 000755 1217 EATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENKSSSFAQ 1286 (1300)
Q Consensus 1217 EpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~~~~~~~f~~ 1286 (1300)
|||++||+.+.+.+.+.|++..+ ++|||++||+++.+.. ||+|++|++|++++.|+++++...+...|.+
T Consensus 151 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~ 223 (230)
T TIGR02770 151 EPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTR 223 (230)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcCCHHHH
Confidence 99999999999999999998653 6899999999999976 9999999999999999999998765555554
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=337.90 Aligned_cols=199 Identities=32% Similarity=0.454 Sum_probs=167.3
Q ss_pred EEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC-----------eEEEE
Q 000755 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-----------TKAYV 685 (1300)
Q Consensus 617 I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g-----------~~ayv 685 (1300)
++++|++++|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 3 l~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v 79 (239)
T cd03296 3 IEVRNVSKRFG---DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFV 79 (239)
T ss_pred EEEEeEEEEEC---CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEE
Confidence 78999999996 25799999999999999999999999999999999999999999999987 26999
Q ss_pred ecCCcCCC-CCHHHHHhcCCCC-------CH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHH
Q 000755 686 AQSPWIQS-GNIEDNILFGKPM-------DR----EKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIA 753 (1300)
Q Consensus 686 ~Q~~~l~~-~Ti~eNI~fg~~~-------~~----~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLA 753 (1300)
+|+|.++. .|++||+.++... +. ++.++.++..++.+ .......+||||||||++||
T Consensus 80 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~la 148 (239)
T cd03296 80 FQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDW-----------LADRYPAQLSGGQRQRVALA 148 (239)
T ss_pred ecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChh-----------hhhcChhhCCHHHHHHHHHH
Confidence 99998875 6999999986421 21 22334444444432 23455678999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHHHhc
Q 000755 754 RALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL--RSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDILNS 830 (1300)
Q Consensus 754 RAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l--~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 830 (1300)
||++.+|+++||||||++||+++.+.+.+ ++..+. .++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 149 ~al~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (239)
T cd03296 149 RALAVEPKVLLLDEPFGALDAKVRKELRR-WLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDH 227 (239)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhcC
Confidence 99999999999999999999999888865 555443 27899999999998765 999999999999999999888653
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-37 Score=316.32 Aligned_cols=212 Identities=27% Similarity=0.405 Sum_probs=185.9
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEE
Q 000755 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSI 1134 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~ 1134 (1300)
|+.+|++++-.++ .+|+++||++++||.+||+||||||||||+++|.|...|++|++.++|.++++.+..++.++-++
T Consensus 2 i~a~nls~~~~Gr--~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raV 79 (259)
T COG4559 2 IRAENLSYSLAGR--RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAV 79 (259)
T ss_pred eeeeeeEEEeecc--eeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhh
Confidence 7889999887654 58999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCC-CcccHHHhcCC----CC---CCCHHH--HHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHH
Q 000755 1135 IPQDPTM-FEGTVRNNLDP----LE---EYKDEE--IWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGR 1204 (1300)
Q Consensus 1135 vpQ~~~l-f~gTvr~Nl~~----~~---~~~d~~--i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LAR 1204 (1300)
+||+..+ |+-||+|-+.+ .+ +..+++ ..++|.++++..+-.+. -..||||||||+.|||
T Consensus 80 lpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~-----------y~~LSGGEqQRVqlAR 148 (259)
T COG4559 80 LPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRD-----------YRTLSGGEQQRVQLAR 148 (259)
T ss_pred cccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccc-----------hhhcCchHHHHHHHHH
Confidence 9999876 88899998753 21 222333 57789999886553332 2468999999999999
Q ss_pred HHcc------CCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhH
Q 000755 1205 VLLK------KSKVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKL 1276 (1300)
Q Consensus 1205 all~------~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l 1276 (1300)
.|.+ ++++|+||||||+||......+.++.|+.. .++.|+.|-||++.... ||||++|.+||++..|+|++.
T Consensus 149 vLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~v 228 (259)
T COG4559 149 VLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDV 228 (259)
T ss_pred HHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHh
Confidence 9976 346999999999999999999999999976 47999999999999876 999999999999999999999
Q ss_pred Hhc
Q 000755 1277 LEN 1279 (1300)
Q Consensus 1277 ~~~ 1279 (1300)
+..
T Consensus 229 lt~ 231 (259)
T COG4559 229 LTD 231 (259)
T ss_pred cCH
Confidence 864
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=340.24 Aligned_cols=211 Identities=23% Similarity=0.284 Sum_probs=177.2
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcC--CCCCcceEEECCeecCCCCHHHHhc-
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRI--VEPTAGEIVIDGINISSIGLHDLRS- 1130 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl--~~p~~G~I~idg~di~~i~~~~lr~- 1130 (1300)
.++++|++++|++. ++|+|+||+|++||++||+|+||||||||+++|+|+ ++|++|+|.+||.++...+....++
T Consensus 7 ~l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (252)
T CHL00131 7 ILEIKNLHASVNEN--EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHL 84 (252)
T ss_pred eEEEEeEEEEeCCE--EeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhee
Confidence 59999999999743 599999999999999999999999999999999998 6899999999999998877666554
Q ss_pred ccEEEcCCCCCCcc-cHHHhcCCCC----------CCC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCC-CCCh
Q 000755 1131 RLSIIPQDPTMFEG-TVRNNLDPLE----------EYK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGE-NWSM 1194 (1300)
Q Consensus 1131 ~i~~vpQ~~~lf~g-Tvr~Nl~~~~----------~~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~-~LSg 1194 (1300)
.++++||++.+|++ |+++|+.... ... .+.+.++++.+++.+.. ++ .... .|||
T Consensus 85 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~----~~~~~~LSg 154 (252)
T CHL00131 85 GIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSF------LS----RNVNEGFSG 154 (252)
T ss_pred eEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhh------hc----cccccCCCH
Confidence 58999999998876 8888874311 001 13355677777765211 11 2222 4999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhc--cCEEEEEeCCEEEEec
Q 000755 1195 GQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVID--SDMVLLLSHGIIEEYD 1271 (1300)
Q Consensus 1195 GqrQrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~--~D~v~vl~~G~i~e~g 1271 (1300)
|||||++|||||+++|++|||||||++||+.+.+.+.+.|++.. +++|||++||+++.+.. ||+|++|++|++++.|
T Consensus 155 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~ 234 (252)
T CHL00131 155 GEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTG 234 (252)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEec
Confidence 99999999999999999999999999999999999999999865 47899999999999875 8999999999999999
Q ss_pred ChhhH
Q 000755 1272 SPTKL 1276 (1300)
Q Consensus 1272 ~~~~l 1276 (1300)
+++.+
T Consensus 235 ~~~~~ 239 (252)
T CHL00131 235 DAELA 239 (252)
T ss_pred Chhhh
Confidence 98844
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=323.94 Aligned_cols=204 Identities=26% Similarity=0.458 Sum_probs=171.4
Q ss_pred eEEEEeEEEEecCCC-CCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe-------------
Q 000755 616 AIEIVDGNFAWDISS-NNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------- 681 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~------------- 681 (1300)
.++++|+++.|+... ..++++||||+|.+||.++|+|+||||||||+++|+|..+|++|+|.++|+
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 588999999997321 125999999999999999999999999999999999999999999999983
Q ss_pred -EEEEecCCcC---CCCCHHHHHhc-----CCCCCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHH
Q 000755 682 -KAYVAQSPWI---QSGNIEDNILF-----GKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQI 752 (1300)
Q Consensus 682 -~ayv~Q~~~l---~~~Ti~eNI~f-----g~~~~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaL 752 (1300)
+-+|+|||.- ..-||++-|.= |.+-.+++..++++..+|.+... ......|||||+|||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l----------~R~P~eLSGGQ~QRiaI 152 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFL----------DRRPHELSGGQRQRIAI 152 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHH----------hcCchhcChhHHHHHHH
Confidence 5799999974 34577776642 22223456778888888876542 34557899999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHHHh
Q 000755 753 ARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL--RSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDILN 829 (1300)
Q Consensus 753 ARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l--~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 829 (1300)
||||..+|+++|||||||+||+.+...|++ ++..+. .+-|.|+|||++..+.+ ||||+||++|+|++.++..++..
T Consensus 153 ARAL~~~PklLIlDEptSaLD~siQa~Iln-lL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 153 ARALIPEPKLLILDEPTSALDVSVQAQILN-LLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred HHHhccCCCEEEecCchhhhcHHHHHHHHH-HHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 999999999999999999999999999986 444333 35699999999999987 99999999999999999999886
Q ss_pred c
Q 000755 830 S 830 (1300)
Q Consensus 830 ~ 830 (1300)
.
T Consensus 232 ~ 232 (252)
T COG1124 232 H 232 (252)
T ss_pred C
Confidence 6
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=329.14 Aligned_cols=181 Identities=24% Similarity=0.336 Sum_probs=159.2
Q ss_pred eEEEEeeeeeeCCC--CCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCC--CCCcceEEECCeecCCCCHHHHh
Q 000755 1054 EVDILNLQVRYAPH--LPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIV--EPTAGEIVIDGINISSIGLHDLR 1129 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~--~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~--~p~~G~I~idg~di~~i~~~~lr 1129 (1300)
.|+++|++++|++. .+++|+|+||++++||+++|+|+||||||||+++|+|++ +|++|+|.+||.++. ..+|
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 58999999999742 246999999999999999999999999999999999986 489999999999885 5667
Q ss_pred cccEEEcCCCCCCcc-cHHHhcCCCCCCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHcc
Q 000755 1130 SRLSIIPQDPTMFEG-TVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLK 1208 (1300)
Q Consensus 1130 ~~i~~vpQ~~~lf~g-Tvr~Nl~~~~~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~ 1208 (1300)
++++|+||++.+|.+ |+++|+.... .++ +||||||||++||||+++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~---------~~~------------------------~LSgGe~qrv~la~al~~ 125 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSA---------LLR------------------------GLSVEQRKRLTIGVELAA 125 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHH---------HHh------------------------cCCHHHhHHHHHHHHHhc
Confidence 889999999988875 9999985210 000 689999999999999999
Q ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhh-hh-ccCEEEEEeC-CEEEEec
Q 000755 1209 KSKVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITS-VI-DSDMVLLLSH-GIIEEYD 1271 (1300)
Q Consensus 1209 ~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~-i~-~~D~v~vl~~-G~i~e~g 1271 (1300)
+|++|+|||||++||+.+...+.+.|++.. .++|+|++||+++. +. .||+|++|++ |++++.|
T Consensus 126 ~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 126 KPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred CCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999999999999999999999864 37899999999984 54 4999999999 9999865
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=344.84 Aligned_cols=203 Identities=29% Similarity=0.448 Sum_probs=172.3
Q ss_pred eEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe-------------E
Q 000755 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------K 682 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-------------~ 682 (1300)
.++++|++++|+.....++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|. +
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 489999999996433356999999999999999999999999999999999999999999999873 5
Q ss_pred EEEecCCc--CCCCCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHH
Q 000755 683 AYVAQSPW--IQSGNIEDNILFGKP---MDR----EKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIA 753 (1300)
Q Consensus 683 ayv~Q~~~--l~~~Ti~eNI~fg~~---~~~----~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLA 753 (1300)
+||+|+|. ++..||+|||.|+.. .++ ++..++++..++....+ ....+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKE-----------REPARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhh-----------CCcccCCHHHHHHHHHH
Confidence 89999984 567899999998742 232 34566677777654433 34468999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHhc
Q 000755 754 RALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL--RSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNS 830 (1300)
Q Consensus 754 RAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l--~~~TvIlvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 830 (1300)
||++.+|+++||||||++||+.+.+.+++ ++..+. .++|+|++||+++.+..||+|++|++|+++..|+.+++...
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~-~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIK-TIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 99999999999999999999999888865 555543 37999999999998878999999999999999999887654
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=325.21 Aligned_cols=177 Identities=33% Similarity=0.506 Sum_probs=160.2
Q ss_pred EEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEEE
Q 000755 1056 DILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSII 1135 (1300)
Q Consensus 1056 ~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~v 1135 (1300)
+++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+...+++.++|+
T Consensus 1 ~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 78 (180)
T cd03214 1 EVENLSVGYGG--RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYV 78 (180)
T ss_pred CeeEEEEEECC--eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHH
Confidence 47899999975 3599999999999999999999999999999999999999999999999999888888888889999
Q ss_pred cCCCCCCcccHHHhcCCCCCCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEE
Q 000755 1136 PQDPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVL 1215 (1300)
Q Consensus 1136 pQ~~~lf~gTvr~Nl~~~~~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~~iLlL 1215 (1300)
|| +++.+++.+...+ .+.+||+|||||++||||++++|+++||
T Consensus 79 ~q--------------------------~l~~~gl~~~~~~-----------~~~~LS~G~~qrl~laral~~~p~llll 121 (180)
T cd03214 79 PQ--------------------------ALELLGLAHLADR-----------PFNELSGGERQRVLLARALAQEPPILLL 121 (180)
T ss_pred HH--------------------------HHHHcCCHhHhcC-----------CcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99 6777887665433 3467999999999999999999999999
Q ss_pred eCCCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhc-cCEEEEEeCCEEEEec
Q 000755 1216 DEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGIIEEYD 1271 (1300)
Q Consensus 1216 DEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g 1271 (1300)
||||++||+++.+.+.+.|++..+ ++|+|++||+++.+.+ ||++++|++|++++.|
T Consensus 122 DEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 122 DEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999988654 6899999999999876 9999999999998753
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=338.39 Aligned_cols=202 Identities=24% Similarity=0.374 Sum_probs=165.9
Q ss_pred EEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe--------------E
Q 000755 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--------------K 682 (1300)
Q Consensus 617 I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~--------------~ 682 (1300)
++++|++++|+ +.++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|. +
T Consensus 1 l~~~~l~~~~~---~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFG---GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEEC---CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 46899999996 246999999999999999999999999999999999999999999998762 6
Q ss_pred EEEecCCcCCCC-CHHHHHhcCCCCC-------------HHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHH
Q 000755 683 AYVAQSPWIQSG-NIEDNILFGKPMD-------------REKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQ 748 (1300)
Q Consensus 683 ayv~Q~~~l~~~-Ti~eNI~fg~~~~-------------~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkq 748 (1300)
+|++|++.++.. |++|||.++.... .+...+ ...+-++.+ |.....+....+|||||||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~q 150 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARE-----RAEELLERV--GLADLADRPAGELSYGQQR 150 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHH-----HHHHHHHHc--CccchhhCChhhCCHHHHH
Confidence 899999988875 9999998864211 111111 011222222 3334456677899999999
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHH
Q 000755 749 RIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-RSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYND 826 (1300)
Q Consensus 749 RiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l-~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 826 (1300)
|++||||++.+|++++|||||++||+.+...+++ .+..+. +++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 151 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 229 (236)
T cd03219 151 RLEIARALATDPKLLLLDEPAAGLNPEETEELAE-LIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDE 229 (236)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHH
Confidence 9999999999999999999999999999988876 444433 68999999999999865 99999999999999999888
Q ss_pred HHh
Q 000755 827 ILN 829 (1300)
Q Consensus 827 l~~ 829 (1300)
+..
T Consensus 230 ~~~ 232 (236)
T cd03219 230 VRN 232 (236)
T ss_pred hcc
Confidence 754
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=356.01 Aligned_cols=202 Identities=28% Similarity=0.398 Sum_probs=172.6
Q ss_pred ceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe-----------EE
Q 000755 615 TAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KA 683 (1300)
Q Consensus 615 ~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-----------~a 683 (1300)
..++++|++++|+ +.++|+|+||++++||+++|+|||||||||||++|+|+++|++|+|.++|. ++
T Consensus 13 ~~L~l~~l~~~~~---~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig 89 (375)
T PRK09452 13 PLVELRGISKSFD---GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVN 89 (375)
T ss_pred ceEEEEEEEEEEC---CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 3589999999996 356899999999999999999999999999999999999999999999884 69
Q ss_pred EEecCCcCCC-CCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHHHH
Q 000755 684 YVAQSPWIQS-GNIEDNILFGKP---MD----REKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARA 755 (1300)
Q Consensus 684 yv~Q~~~l~~-~Ti~eNI~fg~~---~~----~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLARA 755 (1300)
||+|++.+|. .||+|||.|+.. .+ .++.+++++..++...++ ....+|||||||||+||||
T Consensus 90 ~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~p~~LSgGq~QRVaLARa 158 (375)
T PRK09452 90 TVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQ-----------RKPHQLSGGQQQRVAIARA 158 (375)
T ss_pred EEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHHHHHHHHHHH
Confidence 9999999885 599999999753 22 234455666666654443 3446899999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEecCCCccc-cCCEEEEEeCCeEEEecChHHHHhcC
Q 000755 756 LYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL--RSKTVIYVTHQVEFLP-AADLILVMKDGKITQAGKYNDILNSG 831 (1300)
Q Consensus 756 ly~~~~illLDep~saLD~~t~~~i~~~~~~~~l--~~~TvIlvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 831 (1300)
|+.+|+++|||||||+||++++..+.+. +..+. .+.|+|+|||+.+.+. .||+|++|++|+|++.|++++++...
T Consensus 159 L~~~P~llLLDEP~s~LD~~~r~~l~~~-L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p 236 (375)
T PRK09452 159 VVNKPKVLLLDESLSALDYKLRKQMQNE-LKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEP 236 (375)
T ss_pred HhcCCCEEEEeCCCCcCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 9999999999999999999999888654 44443 3789999999999865 59999999999999999999987653
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-37 Score=332.93 Aligned_cols=193 Identities=27% Similarity=0.370 Sum_probs=163.8
Q ss_pred EEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCH----HHHhccc
Q 000755 1057 ILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGL----HDLRSRL 1132 (1300)
Q Consensus 1057 ~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~----~~lr~~i 1132 (1300)
++|+++.|++ .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++..++. ...|+++
T Consensus 1 i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 78 (206)
T TIGR03608 1 LKNISKKFGD--KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKL 78 (206)
T ss_pred CcceEEEECC--EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCe
Confidence 4689999974 359999999999999999999999999999999999999999999999999765432 2356789
Q ss_pred EEEcCCCCCCc-ccHHHhcCCCC---CC----CHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHH
Q 000755 1133 SIIPQDPTMFE-GTVRNNLDPLE---EY----KDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGR 1204 (1300)
Q Consensus 1133 ~~vpQ~~~lf~-gTvr~Nl~~~~---~~----~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LAR 1204 (1300)
+|++|++.+|. .|+++|+.+.. .. .++++.++++..++.+...+ ...+||+|||||++|||
T Consensus 79 ~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~lS~G~~qr~~lar 147 (206)
T TIGR03608 79 GYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQ-----------KIYELSGGEQQRVALAR 147 (206)
T ss_pred eEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcC-----------ChhhCCHHHHHHHHHHH
Confidence 99999999987 59999986421 11 23456778888887544322 34679999999999999
Q ss_pred HHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhccCEEEEE
Q 000755 1205 VLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVIDSDMVLLL 1262 (1300)
Q Consensus 1205 all~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~~D~v~vl 1262 (1300)
||+++|++|||||||++||+.+.+.+.+.|++.. ++.|+|++||+++.+..||+|++|
T Consensus 148 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 148 AILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 9999999999999999999999999999999865 378999999999977679999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=339.15 Aligned_cols=205 Identities=22% Similarity=0.306 Sum_probs=175.4
Q ss_pred EEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEEE
Q 000755 1056 DILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSII 1135 (1300)
Q Consensus 1056 ~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~v 1135 (1300)
+++||+++ .+|+|+||+|++||++||+|+||||||||+++|+|++++ +|+|.+||.++...+...+++.++|+
T Consensus 2 ~~~~l~~~------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~v 74 (248)
T PRK03695 2 QLNDVAVS------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAYL 74 (248)
T ss_pred cccccchh------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEEe
Confidence 56788875 279999999999999999999999999999999999864 99999999999888888888889999
Q ss_pred cCCCCCC-cccHHHhcCCCCC--CC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHcc
Q 000755 1136 PQDPTMF-EGTVRNNLDPLEE--YK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLK 1208 (1300)
Q Consensus 1136 pQ~~~lf-~gTvr~Nl~~~~~--~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~ 1208 (1300)
||++.++ ..|+++|+..... .. .+++.++++.+++.+... .....||+|||||++|||||+.
T Consensus 75 ~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al~~ 143 (248)
T PRK03695 75 SQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLG-----------RSVNQLSGGEWQRVRLAAVVLQ 143 (248)
T ss_pred cccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhc-----------CCcccCCHHHHHHHHHHHHHhc
Confidence 9998654 5699999875321 11 234667788777754332 2346789999999999999997
Q ss_pred -------CCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHHh
Q 000755 1209 -------KSKVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLE 1278 (1300)
Q Consensus 1209 -------~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~~ 1278 (1300)
+|++|||||||++||+.+...+.+.|++.. ++.|||++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 144 ~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 144 VWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred cccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 679999999999999999999999998865 46899999999998876 99999999999999999998864
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=328.03 Aligned_cols=189 Identities=25% Similarity=0.421 Sum_probs=164.1
Q ss_pred ceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC-------------e
Q 000755 615 TAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-------------T 681 (1300)
Q Consensus 615 ~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g-------------~ 681 (1300)
..++++|++++|+. ...++++|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 5 ~~l~~~~l~~~~~~-~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 5 GEIEVENLSVRYAP-DLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred CeEEEEEEEEEeCC-CCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 46999999999963 224799999999999999999999999999999999999999999999987 3
Q ss_pred EEEEecCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHHHHHccCCC
Q 000755 682 KAYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDAD 761 (1300)
Q Consensus 682 ~ayv~Q~~~l~~~Ti~eNI~fg~~~~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLARAly~~~~ 761 (1300)
++||+|+|.++++|++||+.+...++.++..+.++ ++++..+|||||+||++||||++.+|+
T Consensus 84 i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~~p~ 145 (207)
T cd03369 84 LTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLKRPR 145 (207)
T ss_pred EEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 79999999999999999998765554433332222 356788999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEecC
Q 000755 762 IYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGK 823 (1300)
Q Consensus 762 illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~~d~i~~l~~G~i~~~g~ 823 (1300)
++||||||++||+.+...+.+ .+....+++|+|++||+++.+..||++++|++|++++.|+
T Consensus 146 llllDEP~~~LD~~~~~~l~~-~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 146 VLVLDEATASIDYATDALIQK-TIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206 (207)
T ss_pred EEEEeCCcccCCHHHHHHHHH-HHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCC
Confidence 999999999999999887765 5555556899999999999988899999999999988775
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=355.55 Aligned_cols=201 Identities=34% Similarity=0.430 Sum_probs=171.7
Q ss_pred eEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe-----------EEE
Q 000755 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KAY 684 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-----------~ay 684 (1300)
.++++|++++|+ +.++|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++|. ++|
T Consensus 4 ~l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~ 80 (353)
T TIGR03265 4 YLSIDNIRKRFG---AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGI 80 (353)
T ss_pred EEEEEEEEEEeC---CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 589999999996 256899999999999999999999999999999999999999999999883 699
Q ss_pred EecCCcCCC-CCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHHHHH
Q 000755 685 VAQSPWIQS-GNIEDNILFGKP---MD----REKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARAL 756 (1300)
Q Consensus 685 v~Q~~~l~~-~Ti~eNI~fg~~---~~----~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLARAl 756 (1300)
|+|++-+|. .|++|||.|+.. .+ .++.+++++..++.+. ......+||||||||++|||||
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~-----------~~~~~~~LSgGq~QRvaLARaL 149 (353)
T TIGR03265 81 VFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGS-----------ERKYPGQLSGGQQQRVALARAL 149 (353)
T ss_pred EeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCch-----------hhCChhhCCHHHHHHHHHHHHH
Confidence 999999985 799999999743 22 2344455555554432 3456678999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcC--CcEEEEEecCCCccc-cCCEEEEEeCCeEEEecChHHHHhcC
Q 000755 757 YQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLR--SKTVIYVTHQVEFLP-AADLILVMKDGKITQAGKYNDILNSG 831 (1300)
Q Consensus 757 y~~~~illLDep~saLD~~t~~~i~~~~~~~~l~--~~TvIlvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 831 (1300)
+.+|+++|||||||+||+.++..+.+. +..+.+ +.|+|+|||+.+.+. .||+|++|++|++++.|+++++....
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~-L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p 226 (353)
T TIGR03265 150 ATSPGLLLLDEPLSALDARVREHLRTE-IRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHP 226 (353)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 999999999999999999999988764 444332 789999999999865 59999999999999999999998653
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=357.98 Aligned_cols=227 Identities=27% Similarity=0.401 Sum_probs=192.5
Q ss_pred eEEEEeeeeeeCCCCC--cceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCC----cceEEECCeecCCCCHHH
Q 000755 1054 EVDILNLQVRYAPHLP--LVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPT----AGEIVIDGINISSIGLHD 1127 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~--~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~----~G~I~idg~di~~i~~~~ 1127 (1300)
-++++|+++.|..... .+++||||+|.+||++||||.|||||||+.++|.|++++. +|+|.++|.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 6899999999975432 4899999999999999999999999999999999999987 899999999999888766
Q ss_pred Hh----cccEEEcCCCC-CCcc--cHHHhcC----CCCCC----CHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCC
Q 000755 1128 LR----SRLSIIPQDPT-MFEG--TVRNNLD----PLEEY----KDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENW 1192 (1300)
Q Consensus 1128 lr----~~i~~vpQ~~~-lf~g--Tvr~Nl~----~~~~~----~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~L 1192 (1300)
.| ++|++|||+|. .++. ||.+-+. ..... ..++..+.|+++++.+-... ..-...|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---------~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---------DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---------ccCCccc
Confidence 54 47999999985 4543 6665542 11111 23457778999998665443 2234678
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc--CCcEEEEEeCChhhhhc-cCEEEEEeCCEEEE
Q 000755 1193 SMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF--SDCTVITIAHRITSVID-SDMVLLLSHGIIEE 1269 (1300)
Q Consensus 1193 SgGqrQrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e 1269 (1300)
|||||||+.||+||+.+|++||+||||.+||+.+.++|.+.|++.. .+.++|+|||++..+.. ||||+||.+|+++|
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999865 47899999999999998 99999999999999
Q ss_pred ecChhhHHhcCCChHHHHHH
Q 000755 1270 YDSPTKLLENKSSSFAQLVA 1289 (1300)
Q Consensus 1270 ~g~~~~l~~~~~~~f~~l~~ 1289 (1300)
.|+++++++++...|.+..-
T Consensus 236 ~G~~~~i~~~p~hpYT~~Ll 255 (539)
T COG1123 236 TGPTEEILSNPQHPYTRGLL 255 (539)
T ss_pred ecCHHHHHhccCCcccHHHH
Confidence 99999999988776665543
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=338.28 Aligned_cols=204 Identities=26% Similarity=0.393 Sum_probs=173.7
Q ss_pred eEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhcccc---CCccEEEEcCe-----------
Q 000755 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVP---KISGTLKLCGT----------- 681 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~---~~~G~i~~~g~----------- 681 (1300)
.|+++|+++.|+ ++++|+|+||++++||+++|+|+||||||||+++|+|+++ |++|+|.++|.
T Consensus 2 ~~~~~~l~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYG---KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEEC---CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 478999999996 2579999999999999999999999999999999999974 68999999873
Q ss_pred --EEEEecCCcCCCCCHHHHHhcCCCC---------CHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHH
Q 000755 682 --KAYVAQSPWIQSGNIEDNILFGKPM---------DREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRI 750 (1300)
Q Consensus 682 --~ayv~Q~~~l~~~Ti~eNI~fg~~~---------~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRi 750 (1300)
++|++|++.++..|++||+.++... .+++..++++.+++.+.+.. ...+.+.+||||||||+
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKD-------KLKQNALALSGGQQQRL 151 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhH-------HhcCCcccCCHHHHHHH
Confidence 6999999999999999999876321 12345566777777544432 24567789999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHHHh
Q 000755 751 QIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDILN 829 (1300)
Q Consensus 751 aLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 829 (1300)
+||||++++|++++|||||++||+.+...+.+ ++..+.+++|+|++||+++.+.. ||+|++|++|++++.|+.+++..
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~-~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 230 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEE-LLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFE 230 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999888764 56555568999999999998764 99999999999999999998865
Q ss_pred c
Q 000755 830 S 830 (1300)
Q Consensus 830 ~ 830 (1300)
.
T Consensus 231 ~ 231 (246)
T PRK14269 231 N 231 (246)
T ss_pred C
Confidence 3
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=370.59 Aligned_cols=212 Identities=22% Similarity=0.368 Sum_probs=184.6
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHh-ccc
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLR-SRL 1132 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr-~~i 1132 (1300)
.|+++|++++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+..+.+ ..+
T Consensus 11 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 88 (510)
T PRK15439 11 LLCARSISKQYSG--VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGI 88 (510)
T ss_pred eEEEEeEEEEeCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCE
Confidence 5999999999975 3599999999999999999999999999999999999999999999999999877766654 469
Q ss_pred EEEcCCCCCCcc-cHHHhcCCCCCC---CHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHcc
Q 000755 1133 SIIPQDPTMFEG-TVRNNLDPLEEY---KDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLK 1208 (1300)
Q Consensus 1133 ~~vpQ~~~lf~g-Tvr~Nl~~~~~~---~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~ 1208 (1300)
+|+||++.+|.. |+++|+.+.... .++++.++++.+++.+... ....+||||||||++|||||+.
T Consensus 89 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~la~aL~~ 157 (510)
T PRK15439 89 YLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLD-----------SSAGSLEVADRQIVEILRGLMR 157 (510)
T ss_pred EEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCcccc-----------CChhhCCHHHHHHHHHHHHHHc
Confidence 999999988876 999998753211 2345677788887754322 2335789999999999999999
Q ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHHh
Q 000755 1209 KSKVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLE 1278 (1300)
Q Consensus 1209 ~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~~ 1278 (1300)
+|++|||||||++||+.+.+.+.+.|++.. +++|||++||+++.+.+ ||+|++|++|++++.|+++++..
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 158 DSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 999999999999999999999999998864 46899999999999987 99999999999999999988764
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=333.67 Aligned_cols=189 Identities=26% Similarity=0.440 Sum_probs=158.8
Q ss_pred EEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe---------------
Q 000755 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--------------- 681 (1300)
Q Consensus 617 I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~--------------- 681 (1300)
++++|++++|+.. .+++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 6899999999632 246999999999999999999999999999999999999999999999872
Q ss_pred -EEEEecCCcCCC-CCHHHHHhcCCC---C----CHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHH
Q 000755 682 -KAYVAQSPWIQS-GNIEDNILFGKP---M----DREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQI 752 (1300)
Q Consensus 682 -~ayv~Q~~~l~~-~Ti~eNI~fg~~---~----~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaL 752 (1300)
++|++|++.++. .|++||+.++.. . .+++..++++.+++.+.. .....+||||||||++|
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~l 149 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKA-----------HALPMQLSGGEQQRVAI 149 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhh-----------hCChhhCCHHHHHHHHH
Confidence 699999998875 699999987521 1 123455666666665433 23446899999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhh-cCCcEEEEEecCCCcccc-CCEEEEEeCCeE
Q 000755 753 ARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LRSKTVIYVTHQVEFLPA-ADLILVMKDGKI 818 (1300)
Q Consensus 753 ARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~-l~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i 818 (1300)
|||++++|+++||||||++||+.+.+.+.+ .+..+ .+++|+|+|||+++++.. ||+|++|++|+|
T Consensus 150 aral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 150 ARAIVHKPPLLLADEPTGNLDPELSRDIMR-LFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999988875 44444 347899999999999875 999999999975
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=345.48 Aligned_cols=204 Identities=25% Similarity=0.465 Sum_probs=169.0
Q ss_pred eEEEEeEEEEecCCC--CCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC-------------
Q 000755 616 AIEIVDGNFAWDISS--NNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG------------- 680 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g------------- 680 (1300)
.++++|++|+|+... ..++|+|+||+|++||+++|+|+||||||||+++|+|.++|++|+|.++|
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999996322 24799999999999999999999999999999999999999999999887
Q ss_pred ----eEEEEecCC--cCCCCCHHHHHhcCCC---CCHHH----HHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHH
Q 000755 681 ----TKAYVAQSP--WIQSGNIEDNILFGKP---MDREK----YDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQK 747 (1300)
Q Consensus 681 ----~~ayv~Q~~--~l~~~Ti~eNI~fg~~---~~~~~----~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQk 747 (1300)
.++||+|+| .++..|+.|||.|+.. ++.++ ..++++.+++.. ...+..+.+||||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~~~~~~~~~LSgGq~ 151 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSR----------DVMSQSPFQMSGGQM 151 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCCcccCCHHHH
Confidence 258999998 5778899999998742 23322 233333333321 123456789999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEecCCCccc-cCCEEEEEeCCeEEEecCh
Q 000755 748 QRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL--RSKTVIYVTHQVEFLP-AADLILVMKDGKITQAGKY 824 (1300)
Q Consensus 748 qRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l--~~~TvIlvtH~~~~l~-~~d~i~~l~~G~i~~~g~~ 824 (1300)
||++|||||+.+|+++||||||++||+.+...+.+ .+..+. .++|+|+|||+++.+. .||+|++|++|+|++.|++
T Consensus 152 qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~-~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~ 230 (286)
T PRK13646 152 RKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMR-LLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSP 230 (286)
T ss_pred HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHH-HHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999988865 455443 4799999999999875 5999999999999999999
Q ss_pred HHHHhc
Q 000755 825 NDILNS 830 (1300)
Q Consensus 825 ~~l~~~ 830 (1300)
+++...
T Consensus 231 ~~~~~~ 236 (286)
T PRK13646 231 KELFKD 236 (286)
T ss_pred HHHHhC
Confidence 887653
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=339.04 Aligned_cols=205 Identities=28% Similarity=0.439 Sum_probs=172.3
Q ss_pred ceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhcccc-----CCccEEEEcC---------
Q 000755 615 TAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVP-----KISGTLKLCG--------- 680 (1300)
Q Consensus 615 ~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~-----~~~G~i~~~g--------- 680 (1300)
..++++|++++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 5 ~~l~~~~l~~~~~---~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (253)
T PRK14242 5 PKMEARGLSFFYG---DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81 (253)
T ss_pred cEEEEeeeEEEEC---CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccC
Confidence 3699999999996 2469999999999999999999999999999999999874 5899998876
Q ss_pred ------eEEEEecCCcCCCCCHHHHHhcCCC---C-C----HHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHH
Q 000755 681 ------TKAYVAQSPWIQSGNIEDNILFGKP---M-D----REKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQ 746 (1300)
Q Consensus 681 ------~~ayv~Q~~~l~~~Ti~eNI~fg~~---~-~----~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQ 746 (1300)
.++|++|++.++..|++||+.++.. . . .++.++.++.+++.+.+. +..+....+|||||
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq 154 (253)
T PRK14242 82 VVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK-------DRLHESALGLSGGQ 154 (253)
T ss_pred HHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCHHH
Confidence 2699999999988999999987631 1 1 234455566666543322 23456778999999
Q ss_pred HHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChH
Q 000755 747 KQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYN 825 (1300)
Q Consensus 747 kqRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 825 (1300)
|||++||||++.+|+++||||||++||+.+...+.+ .+..+.+++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 155 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 233 (253)
T PRK14242 155 QQRLCIARALAVEPEVLLMDEPASALDPIATQKIEE-LIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTE 233 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999888865 55555557899999999999865 9999999999999999999
Q ss_pred HHHhc
Q 000755 826 DILNS 830 (1300)
Q Consensus 826 ~l~~~ 830 (1300)
++...
T Consensus 234 ~~~~~ 238 (253)
T PRK14242 234 QIFTR 238 (253)
T ss_pred HHHcC
Confidence 88654
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=356.04 Aligned_cols=200 Identities=31% Similarity=0.436 Sum_probs=170.6
Q ss_pred eEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe-----------EEE
Q 000755 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KAY 684 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-----------~ay 684 (1300)
.++++|++++|+ +.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|
T Consensus 3 ~l~i~~l~~~~~---~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~ 79 (369)
T PRK11000 3 SVTLRNVTKAYG---DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGM 79 (369)
T ss_pred EEEEEEEEEEeC---CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEE
Confidence 488999999996 256999999999999999999999999999999999999999999999873 799
Q ss_pred EecCCcCCC-CCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHHHHH
Q 000755 685 VAQSPWIQS-GNIEDNILFGKP---MD----REKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARAL 756 (1300)
Q Consensus 685 v~Q~~~l~~-~Ti~eNI~fg~~---~~----~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLARAl 756 (1300)
|+|++.++. .|++|||.|+.. .+ .++.+++++.+++.+.. .....+||||||||++|||||
T Consensus 80 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~-----------~~~~~~LSgGq~QRvaLAraL 148 (369)
T PRK11000 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLL-----------DRKPKALSGGQRQRVAIGRTL 148 (369)
T ss_pred EeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhh-----------cCChhhCCHHHHHHHHHHHHH
Confidence 999999885 599999998743 22 23455566666664333 344568999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHHHhc
Q 000755 757 YQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL--RSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDILNS 830 (1300)
Q Consensus 757 y~~~~illLDep~saLD~~t~~~i~~~~~~~~l--~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 830 (1300)
+.+|+++|||||||+||+.+++.+.+. +..+. .++|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 149 ~~~P~lLLLDEPts~LD~~~~~~l~~~-L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~ 224 (369)
T PRK11000 149 VAEPSVFLLDEPLSNLDAALRVQMRIE-ISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (369)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999888754 44443 27899999999998764 999999999999999999998754
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=322.47 Aligned_cols=200 Identities=30% Similarity=0.432 Sum_probs=170.2
Q ss_pred eEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC---------------
Q 000755 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--------------- 680 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g--------------- 680 (1300)
.|+++|++..|+ +++.+|+||||+|++||++||+|+|||||||||++|.|..+|++|+|.++|
T Consensus 3 ~i~~~nl~k~yp--~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYP--GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecC--CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 589999999997 357899999999999999999999999999999999999999999999988
Q ss_pred -eEEEEecCCcCC-CCCHHHHHhcCCC------------CCHHHHHHHH---HHhcchHHHhhccCCCcccccCCCCCCC
Q 000755 681 -TKAYVAQSPWIQ-SGNIEDNILFGKP------------MDREKYDRVL---EACSLKKDLEILSFGDQTVIGERGINLS 743 (1300)
Q Consensus 681 -~~ayv~Q~~~l~-~~Ti~eNI~fg~~------------~~~~~~~~vl---~~~~l~~dl~~l~~Gd~t~ige~g~~LS 743 (1300)
.+||++|++-|- ..|+-+|++.|+- ++++....++ +..++.+.. -.+..+||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A-----------~qra~~LS 149 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKA-----------YQRASTLS 149 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHH-----------HHHhccCC
Confidence 369999999875 5799999998752 3444444443 444443332 34677999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHh-hcCCcEEEEEecCCCccc-cCCEEEEEeCCeEEEe
Q 000755 744 GGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLG-LLRSKTVIYVTHQVEFLP-AADLILVMKDGKITQA 821 (1300)
Q Consensus 744 GGQkqRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~-~l~~~TvIlvtH~~~~l~-~~d~i~~l~~G~i~~~ 821 (1300)
|||+|||+|||||+++|+|+|-|||+++|||.+++++++.+... .-.|.|+|+.-|++++.. .||||+-|++|+|++.
T Consensus 150 GGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfD 229 (258)
T COG3638 150 GGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFD 229 (258)
T ss_pred cchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEe
Confidence 99999999999999999999999999999999999998644322 235799999999999965 5999999999999999
Q ss_pred cChHHHH
Q 000755 822 GKYNDIL 828 (1300)
Q Consensus 822 g~~~~l~ 828 (1300)
|+.+|+-
T Consensus 230 g~~~el~ 236 (258)
T COG3638 230 GPASELT 236 (258)
T ss_pred CChhhhh
Confidence 9998864
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=346.20 Aligned_cols=204 Identities=25% Similarity=0.409 Sum_probs=169.5
Q ss_pred eEEEEeEEEEecCCC--CCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC-------------
Q 000755 616 AIEIVDGNFAWDISS--NNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG------------- 680 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g------------- 680 (1300)
.|+++|++++|+... ..++|+|+||+|++||+++|+|+||||||||+++|.|.++|++|+|.++|
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 378999999996322 13699999999999999999999999999999999999999999998863
Q ss_pred ------------------------eEEEEecCC--cCCCCCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhhc
Q 000755 681 ------------------------TKAYVAQSP--WIQSGNIEDNILFGKP---MDR----EKYDRVLEACSLKKDLEIL 727 (1300)
Q Consensus 681 ------------------------~~ayv~Q~~--~l~~~Ti~eNI~fg~~---~~~----~~~~~vl~~~~l~~dl~~l 727 (1300)
.++||+|+| .++..|++|||.|+.. .++ ++..++++.++|..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~---- 157 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDES---- 157 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChh----
Confidence 258999987 5778899999998742 232 334555555555422
Q ss_pred cCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhh-cCCcEEEEEecCCCccc-
Q 000755 728 SFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LRSKTVIYVTHQVEFLP- 805 (1300)
Q Consensus 728 ~~Gd~t~ige~g~~LSGGQkqRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~-l~~~TvIlvtH~~~~l~- 805 (1300)
..+....+||||||||++|||||+.+|+++||||||++||+...+.+.+ .+..+ ..++|+|+|||+++.+.
T Consensus 158 ------~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tiiivtHd~~~~~~ 230 (305)
T PRK13651 158 ------YLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILE-IFDNLNKQGKTIILVTHDLDNVLE 230 (305)
T ss_pred ------hhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEeeCHHHHHH
Confidence 1345667899999999999999999999999999999999999888865 44443 34899999999999865
Q ss_pred cCCEEEEEeCCeEEEecChHHHHhc
Q 000755 806 AADLILVMKDGKITQAGKYNDILNS 830 (1300)
Q Consensus 806 ~~d~i~~l~~G~i~~~g~~~~l~~~ 830 (1300)
.||+|++|++|+|++.|+.+++...
T Consensus 231 ~adrv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 231 WTKRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred hCCEEEEEECCEEEEECCHHHHhcC
Confidence 5999999999999999999988653
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=332.24 Aligned_cols=191 Identities=34% Similarity=0.449 Sum_probs=160.2
Q ss_pred EEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC-----------eEEEE
Q 000755 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-----------TKAYV 685 (1300)
Q Consensus 617 I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g-----------~~ayv 685 (1300)
++++|++++|+ ++++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 1 l~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v 77 (213)
T cd03259 1 LELKGLSKTYG---SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMV 77 (213)
T ss_pred CeeeeeEEEeC---CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEE
Confidence 46899999996 25799999999999999999999999999999999999999999999987 36999
Q ss_pred ecCCcCCC-CCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHHHHHc
Q 000755 686 AQSPWIQS-GNIEDNILFGKP---MDR----EKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALY 757 (1300)
Q Consensus 686 ~Q~~~l~~-~Ti~eNI~fg~~---~~~----~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLARAly 757 (1300)
+|++.++. .|++||+.++.. .+. ++..++++.+++.+. ......+||||||||++||||+.
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrl~la~al~ 146 (213)
T cd03259 78 FQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGL-----------LNRYPHELSGGQQQRVALARALA 146 (213)
T ss_pred cCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhh-----------hhcChhhCCHHHHHHHHHHHHHh
Confidence 99998775 699999987632 122 234455555555433 34455789999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEecCCCcccc-CCEEEEEeCCeEEEec
Q 000755 758 QDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL--RSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAG 822 (1300)
Q Consensus 758 ~~~~illLDep~saLD~~t~~~i~~~~~~~~l--~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g 822 (1300)
++|+++||||||++||+.+...+++ ++..+. .++|+|++||+++++.. ||+|++|++|++++.|
T Consensus 147 ~~p~~lllDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 147 REPSLLLLDEPLSALDAKLREELRE-ELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999888875 455443 37899999999998765 9999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=317.80 Aligned_cols=164 Identities=29% Similarity=0.373 Sum_probs=149.5
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEE
Q 000755 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSI 1134 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~ 1134 (1300)
|+++|++++|+.+ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|. ++++|
T Consensus 1 i~~~~~~~~~~~~-~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~~ 68 (166)
T cd03223 1 IELENLSLATPDG-RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLLF 68 (166)
T ss_pred CEEEEEEEEcCCC-CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEEE
Confidence 4789999999643 45999999999999999999999999999999999999999999999873 57999
Q ss_pred EcCCCCCCcccHHHhcCCCCCCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEE
Q 000755 1135 IPQDPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLV 1214 (1300)
Q Consensus 1135 vpQ~~~lf~gTvr~Nl~~~~~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~~iLl 1214 (1300)
+||++.++++|+++|+... ....||+|||||++||||++++|++++
T Consensus 69 ~~q~~~~~~~tv~~nl~~~----------------------------------~~~~LS~G~~~rv~laral~~~p~~ll 114 (166)
T cd03223 69 LPQRPYLPLGTLREQLIYP----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVF 114 (166)
T ss_pred ECCCCccccccHHHHhhcc----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999998888999998642 235799999999999999999999999
Q ss_pred EeCCCcCCCHHHHHHHHHHHHHhcCCcEEEEEeCChhhhhccCEEEEEeCCE
Q 000755 1215 LDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGI 1266 (1300)
Q Consensus 1215 LDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~iaHrl~~i~~~D~v~vl~~G~ 1266 (1300)
|||||++||+.+.+.+.+.|++. ++|+|++||+++....||+|++|++|-
T Consensus 115 lDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 115 LDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred EECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 99999999999999999999986 589999999998776799999998863
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=337.92 Aligned_cols=203 Identities=29% Similarity=0.436 Sum_probs=170.8
Q ss_pred EEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCC-----ccEEEEcC-----------
Q 000755 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKI-----SGTLKLCG----------- 680 (1300)
Q Consensus 617 I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~-----~G~i~~~g----------- 680 (1300)
++++|++++|+ +.++++|+||+|++||+++|+|+||||||||+++|+|.++|+ +|+|.++|
T Consensus 2 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYG---EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEEC---CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 78999999996 246999999999999999999999999999999999999998 99999876
Q ss_pred ----eEEEEecCCcCCCCCHHHHHhcCCC----CCH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHH
Q 000755 681 ----TKAYVAQSPWIQSGNIEDNILFGKP----MDR----EKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQ 748 (1300)
Q Consensus 681 ----~~ayv~Q~~~l~~~Ti~eNI~fg~~----~~~----~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkq 748 (1300)
.++|++|+++++..|++||+.++.. .+. ++.+++++..++.++++ ........+|||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~q 151 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQQQ 151 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHHHHH
Confidence 2689999999988999999987532 121 23445555555543221 2345667899999999
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHH
Q 000755 749 RIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDI 827 (1300)
Q Consensus 749 RiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 827 (1300)
|++||||++.+|+++||||||++||+.+...+++ ++..+.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEE-LIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQI 230 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999888865 56555556899999999998765 999999999999999999988
Q ss_pred Hhc
Q 000755 828 LNS 830 (1300)
Q Consensus 828 ~~~ 830 (1300)
...
T Consensus 231 ~~~ 233 (247)
T TIGR00972 231 FTN 233 (247)
T ss_pred HhC
Confidence 653
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-36 Score=334.69 Aligned_cols=201 Identities=27% Similarity=0.436 Sum_probs=171.7
Q ss_pred eEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe-------------E
Q 000755 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------K 682 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-------------~ 682 (1300)
.++++|++++|+ ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|. +
T Consensus 3 ~l~~~~l~~~~~---~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSF---GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeC---CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 488999999995 357999999999999999999999999999999999999999999999872 6
Q ss_pred EEEecCCcCCCCCHHHHHhcCCCC---CHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHHHHHccC
Q 000755 683 AYVAQSPWIQSGNIEDNILFGKPM---DREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQD 759 (1300)
Q Consensus 683 ayv~Q~~~l~~~Ti~eNI~fg~~~---~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLARAly~~ 759 (1300)
+|++|++.++..|++||+.++... ..++..+.++.+++..+. ......+||||||||++||||++++
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEY----------ATRDVKNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHH----------hhCCcccCCHHHHHHHHHHHHHhcC
Confidence 899999999989999999986432 234555666666664222 2345678999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHHHhc
Q 000755 760 ADIYLFDDPFSAVDAHTGSHLFKEVLLGLL--RSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDILNS 830 (1300)
Q Consensus 760 ~~illLDep~saLD~~t~~~i~~~~~~~~l--~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 830 (1300)
|+++||||||++||+.+...+++ ++.... .++|+|++||+++.+.. ||+|++|++|++++.|+.+++...
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIEE-LIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTN 222 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcC
Confidence 99999999999999999888765 455443 37999999999999775 999999999999999999988754
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=352.37 Aligned_cols=200 Identities=36% Similarity=0.497 Sum_probs=170.1
Q ss_pred eEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe-----------EEE
Q 000755 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KAY 684 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-----------~ay 684 (1300)
.++++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|
T Consensus 2 ~L~i~~l~~~~~---~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~ 78 (353)
T PRK10851 2 SIEIANIKKSFG---RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGF 78 (353)
T ss_pred EEEEEEEEEEeC---CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEE
Confidence 378999999996 256999999999999999999999999999999999999999999999873 699
Q ss_pred EecCCcCCC-CCHHHHHhcCCCC-------C----HHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHH
Q 000755 685 VAQSPWIQS-GNIEDNILFGKPM-------D----REKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQI 752 (1300)
Q Consensus 685 v~Q~~~l~~-~Ti~eNI~fg~~~-------~----~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaL 752 (1300)
|+|++.++. .|++|||.|+... + +++..++++..++.+. ......+||||||||++|
T Consensus 79 v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-----------~~~~~~~LSgGq~QRval 147 (353)
T PRK10851 79 VFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHL-----------ADRYPAQLSGGQKQRVAL 147 (353)
T ss_pred EecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchh-----------hhCChhhCCHHHHHHHHH
Confidence 999999986 5999999997431 2 1244445555555432 234567899999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcC--CcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHHHh
Q 000755 753 ARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLR--SKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDILN 829 (1300)
Q Consensus 753 ARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~--~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 829 (1300)
||||+.+|+++|||||||+||+.++..+.+ .+..+.+ +.|+|+|||+++.+.. ||+|++|++|+|++.|+++++..
T Consensus 148 ArAL~~~P~llLLDEP~s~LD~~~r~~l~~-~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~ 226 (353)
T PRK10851 148 ARALAVEPQILLLDEPFGALDAQVRKELRR-WLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWR 226 (353)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999988875 4444433 7899999999998665 99999999999999999999876
Q ss_pred c
Q 000755 830 S 830 (1300)
Q Consensus 830 ~ 830 (1300)
.
T Consensus 227 ~ 227 (353)
T PRK10851 227 E 227 (353)
T ss_pred C
Confidence 4
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-36 Score=337.90 Aligned_cols=205 Identities=27% Similarity=0.401 Sum_probs=171.6
Q ss_pred ceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccC-----CccEEEEcC---------
Q 000755 615 TAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK-----ISGTLKLCG--------- 680 (1300)
Q Consensus 615 ~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~-----~~G~i~~~g--------- 680 (1300)
..++++|++++|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|
T Consensus 6 ~~l~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (254)
T PRK14273 6 AIIETENLNLFYT---DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82 (254)
T ss_pred ceEEEeeeEEEeC---CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccccc
Confidence 3699999999996 24699999999999999999999999999999999999987 589999876
Q ss_pred ------eEEEEecCCcCCCCCHHHHHhcCCC----CC----HHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHH
Q 000755 681 ------TKAYVAQSPWIQSGNIEDNILFGKP----MD----REKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQ 746 (1300)
Q Consensus 681 ------~~ayv~Q~~~l~~~Ti~eNI~fg~~----~~----~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQ 746 (1300)
.++|++|++.+++.|++|||.|+.. .+ +++..++++.+++...+. .....+..+|||||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgG~ 155 (254)
T PRK14273 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVK-------DKLNTNALSLSGGQ 155 (254)
T ss_pred HHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhH-------HHHhCCcccCCHHH
Confidence 2689999999999999999998642 12 223444555555532221 12345678999999
Q ss_pred HHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChH
Q 000755 747 KQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYN 825 (1300)
Q Consensus 747 kqRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 825 (1300)
|||++||||++++|+++||||||++||+.+...+++ .+..+.+++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 234 (254)
T PRK14273 156 QQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEE-LIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTD 234 (254)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999988865 55555567899999999998765 9999999999999999999
Q ss_pred HHHhc
Q 000755 826 DILNS 830 (1300)
Q Consensus 826 ~l~~~ 830 (1300)
++.+.
T Consensus 235 ~~~~~ 239 (254)
T PRK14273 235 ELFFN 239 (254)
T ss_pred HHHhC
Confidence 98754
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=336.38 Aligned_cols=191 Identities=23% Similarity=0.347 Sum_probs=159.5
Q ss_pred CcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEEEc-CCCCCCc-ccH
Q 000755 1069 PLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIP-QDPTMFE-GTV 1146 (1300)
Q Consensus 1069 ~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~vp-Q~~~lf~-gTv 1146 (1300)
.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++... ....+++++|+| |++.++. .|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcH
Confidence 3599999999999999999999999999999999999999999999999987543 345678899998 5566764 599
Q ss_pred HHhcCCCC---CCCHH----HHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEeCCC
Q 000755 1147 RNNLDPLE---EYKDE----EIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEAT 1219 (1300)
Q Consensus 1147 r~Nl~~~~---~~~d~----~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~~iLlLDEpT 1219 (1300)
++|+.... ....+ .+.++++.+++.+.. |+ ....||+|||||++|||||+.+|++|||||||
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-------~~----~~~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLEELL-------DT----PVRQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHh-------cC----ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 99985321 22222 345566666664432 22 23579999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhhhhc-cCEEEEEeCCEEEEec
Q 000755 1220 ASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGIIEEYD 1271 (1300)
Q Consensus 1220 s~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g 1271 (1300)
++||+.+.+.+.+.|++..+ ++|||++||+++.+.. ||+|++|++|++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999998643 6899999999999877 9999999999998764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=353.62 Aligned_cols=202 Identities=31% Similarity=0.453 Sum_probs=172.0
Q ss_pred ceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCc--cEEEEcCe-----------
Q 000755 615 TAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKIS--GTLKLCGT----------- 681 (1300)
Q Consensus 615 ~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~--G~i~~~g~----------- 681 (1300)
+.++++|++++|+ +.++|+|+||+|++||+++|+|||||||||||++|+|+.+|++ |+|.++|.
T Consensus 4 ~~l~~~~l~~~~~---~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ 80 (362)
T TIGR03258 4 GGIRIDHLRVAYG---ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRG 80 (362)
T ss_pred eEEEEEEEEEEEC---CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCC
Confidence 4699999999996 2469999999999999999999999999999999999999999 99999873
Q ss_pred EEEEecCCcCCC-CCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHH
Q 000755 682 KAYVAQSPWIQS-GNIEDNILFGKP---MDR----EKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIA 753 (1300)
Q Consensus 682 ~ayv~Q~~~l~~-~Ti~eNI~fg~~---~~~----~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLA 753 (1300)
++||+|++.+|. .|++|||.|+.. .+. ++.+++++..+|.+.. .....+||||||||++||
T Consensus 81 ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~-----------~~~~~~LSgGq~QRvaLA 149 (362)
T TIGR03258 81 LALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAA-----------AHLPAQLSGGMQQRIAIA 149 (362)
T ss_pred EEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchh-----------hCChhhCCHHHHHHHHHH
Confidence 699999999985 599999998743 222 3455556665554433 445568999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc-C--CcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHHHh
Q 000755 754 RALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-R--SKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDILN 829 (1300)
Q Consensus 754 RAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l-~--~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 829 (1300)
|||..+|+++|||||||+||+.....+.+. +..+. + +.|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 150 RAL~~~P~llLLDEP~s~LD~~~r~~l~~~-l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~ 228 (362)
T TIGR03258 150 RAIAIEPDVLLLDEPLSALDANIRANMREE-IAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYD 228 (362)
T ss_pred HHHhcCCCEEEEcCccccCCHHHHHHHHHH-HHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999988764 44332 2 6899999999998654 99999999999999999999976
Q ss_pred cC
Q 000755 830 SG 831 (1300)
Q Consensus 830 ~~ 831 (1300)
..
T Consensus 229 ~p 230 (362)
T TIGR03258 229 AP 230 (362)
T ss_pred Cc
Confidence 53
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=329.20 Aligned_cols=188 Identities=31% Similarity=0.520 Sum_probs=160.0
Q ss_pred EEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC----------eEEEEec
Q 000755 618 EIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG----------TKAYVAQ 687 (1300)
Q Consensus 618 ~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g----------~~ayv~Q 687 (1300)
+++|++++|+.. .++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++| .++|++|
T Consensus 1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q 78 (205)
T cd03226 1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQ 78 (205)
T ss_pred CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEec
Confidence 367899999621 5799999999999999999999999999999999999999999999987 3799999
Q ss_pred CC--cCCCCCHHHHHhcCCC---CCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCE
Q 000755 688 SP--WIQSGNIEDNILFGKP---MDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADI 762 (1300)
Q Consensus 688 ~~--~l~~~Ti~eNI~fg~~---~~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLARAly~~~~i 762 (1300)
+| .++..|++||+.++.+ .++++..++++.+++.+..+ ....+||||||||++||||++.+|++
T Consensus 79 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~laral~~~p~l 147 (205)
T cd03226 79 DVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKE-----------RHPLSLSGGQKQRLAIAAALLSGKDL 147 (205)
T ss_pred ChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcC-----------CCchhCCHHHHHHHHHHHHHHhCCCE
Confidence 98 4678899999998643 23346677777777754433 33458999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHhh-cCCcEEEEEecCCCcccc-CCEEEEEeCCeEE
Q 000755 763 YLFDDPFSAVDAHTGSHLFKEVLLGL-LRSKTVIYVTHQVEFLPA-ADLILVMKDGKIT 819 (1300)
Q Consensus 763 llLDep~saLD~~t~~~i~~~~~~~~-l~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~ 819 (1300)
+||||||++||+.+.+.+.+ .+..+ .+++|+|++||+++.+.. ||+|++|++|+++
T Consensus 148 lllDEPt~~LD~~~~~~l~~-~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 148 LIFDEPTSGLDYKNMERVGE-LIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred EEEeCCCccCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 99999999999999888865 45544 457899999999999875 9999999999974
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=342.44 Aligned_cols=198 Identities=30% Similarity=0.463 Sum_probs=169.0
Q ss_pred eEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC-------------eE
Q 000755 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-------------TK 682 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g-------------~~ 682 (1300)
.++++|++++|+. ..++|+|+||+|++||+++|+|+||||||||+++|+|.++|++|+|.++| .+
T Consensus 4 ~l~~~~l~~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCC--CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 4899999999962 35699999999999999999999999999999999999999999999987 26
Q ss_pred EEEecCC--cCCCCCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHH
Q 000755 683 AYVAQSP--WIQSGNIEDNILFGKP---MD----REKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIA 753 (1300)
Q Consensus 683 ayv~Q~~--~l~~~Ti~eNI~fg~~---~~----~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLA 753 (1300)
+|++|+| .++..|+.||+.|+.. .+ +++++++++.+++.+..+. ....||||||||++||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LSgG~~qrv~la 150 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDK-----------PPYHLSYGQKKRVAIA 150 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcC-----------ChhhCCHHHHHHHHHH
Confidence 9999998 5788899999998742 22 2355666777777544433 3458999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhh-cCCcEEEEEecCCCccc-cCCEEEEEeCCeEEEecChHHH
Q 000755 754 RALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LRSKTVIYVTHQVEFLP-AADLILVMKDGKITQAGKYNDI 827 (1300)
Q Consensus 754 RAly~~~~illLDep~saLD~~t~~~i~~~~~~~~-l~~~TvIlvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l 827 (1300)
|||..+|+++||||||++||+.+...+.+ ++..+ .+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLME-ILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 99999999999999999999999988865 45444 34799999999999985 5999999999999999998654
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-36 Score=335.74 Aligned_cols=197 Identities=34% Similarity=0.455 Sum_probs=165.4
Q ss_pred EEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe---------------
Q 000755 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--------------- 681 (1300)
Q Consensus 617 I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~--------------- 681 (1300)
++++|++++|+. ++++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|.
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 678999999951 357999999999999999999999999999999999999999999998772
Q ss_pred -EEEEecCCcCCC-CCHHHHHhcCCCC---------------CHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCH
Q 000755 682 -KAYVAQSPWIQS-GNIEDNILFGKPM---------------DREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSG 744 (1300)
Q Consensus 682 -~ayv~Q~~~l~~-~Ti~eNI~fg~~~---------------~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSG 744 (1300)
++|++|++.++. .|++||+.++... +.++..++++.+++.. .......+|||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSg 148 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLAD-----------KAYQRADQLSG 148 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHh-----------hhcCCcccCCH
Confidence 699999998875 6999999876321 1123344455554433 23456778999
Q ss_pred HHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEecCCCccc-cCCEEEEEeCCeEEEe
Q 000755 745 GQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL--RSKTVIYVTHQVEFLP-AADLILVMKDGKITQA 821 (1300)
Q Consensus 745 GQkqRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l--~~~TvIlvtH~~~~l~-~~d~i~~l~~G~i~~~ 821 (1300)
|||||++||||++.+|+++||||||++||+.+...+.+ .+..+. .++|+|++||+++.+. .||++++|++|++++.
T Consensus 149 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~ 227 (243)
T TIGR02315 149 GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMD-YLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFD 227 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEec
Confidence 99999999999999999999999999999999888865 455443 3789999999999985 4999999999999999
Q ss_pred cChHHH
Q 000755 822 GKYNDI 827 (1300)
Q Consensus 822 g~~~~l 827 (1300)
|+++++
T Consensus 228 ~~~~~~ 233 (243)
T TIGR02315 228 GAPSEL 233 (243)
T ss_pred CCHHHh
Confidence 998876
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=332.58 Aligned_cols=196 Identities=21% Similarity=0.363 Sum_probs=164.6
Q ss_pred EEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC------------eEEE
Q 000755 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG------------TKAY 684 (1300)
Q Consensus 617 I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g------------~~ay 684 (1300)
|+++|++++|+ ++++|+|+||++++||+++|+|+||||||||+++|+|.++|++|+|.++| .++|
T Consensus 1 i~~~~~~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYG---DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGI 77 (220)
T ss_pred CEEEEEEEEEC---CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEE
Confidence 47899999996 25799999999999999999999999999999999999999999999987 3689
Q ss_pred EecCCcCCC-CCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHHHHH
Q 000755 685 VAQSPWIQS-GNIEDNILFGKP---MD----REKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARAL 756 (1300)
Q Consensus 685 v~Q~~~l~~-~Ti~eNI~fg~~---~~----~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLARAl 756 (1300)
++|++.++. .|++||+.++.. .+ +++.+++++.+++.+.. .....+||||||||++||||+
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qr~~la~al 146 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAA-----------DRLVKTYSGGMRRRLEIARSL 146 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHh-----------hCChhhCCHHHHHHHHHHHHH
Confidence 999998776 599999987421 22 23455666666665433 233468999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc-C-CcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHH
Q 000755 757 YQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-R-SKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDI 827 (1300)
Q Consensus 757 y~~~~illLDep~saLD~~t~~~i~~~~~~~~l-~-~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 827 (1300)
+.+|+++||||||++||+++.+.+.+ .+..+. + ++|+|++||+++.+.. ||+|++|++|++++.|+.+++
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 147 VHRPEVLFLDEPTIGLDPQTRAHVWE-YIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 99999999999999999999888865 444433 3 7899999999999875 999999999999998887653
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=335.59 Aligned_cols=198 Identities=31% Similarity=0.445 Sum_probs=165.0
Q ss_pred EEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC----------------
Q 000755 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG---------------- 680 (1300)
Q Consensus 617 I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g---------------- 680 (1300)
++++|++++|+. ++++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 468999999962 25799999999999999999999999999999999999999999999876
Q ss_pred eEEEEecCCcCCC-CCHHHHHhcCCC------------CC---HHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCH
Q 000755 681 TKAYVAQSPWIQS-GNIEDNILFGKP------------MD---REKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSG 744 (1300)
Q Consensus 681 ~~ayv~Q~~~l~~-~Ti~eNI~fg~~------------~~---~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSG 744 (1300)
.++|++|++.++. .|++||+.++.. .. .++..++++..++. ......+.+|||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~ 147 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLL-----------DKAYQRADQLSG 147 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCCh-----------hhhCCCcccCCH
Confidence 2689999998775 799999987532 11 12233334444332 234556789999
Q ss_pred HHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEecCCCccc-cCCEEEEEeCCeEEEe
Q 000755 745 GQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL--RSKTVIYVTHQVEFLP-AADLILVMKDGKITQA 821 (1300)
Q Consensus 745 GQkqRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l--~~~TvIlvtH~~~~l~-~~d~i~~l~~G~i~~~ 821 (1300)
|||||++||||++.+|+++||||||++||+.+...+++ .+..+. .++|+|++||+++.+. .||+|++|++|++++.
T Consensus 148 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~ 226 (241)
T cd03256 148 GQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMD-LLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFD 226 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEee
Confidence 99999999999999999999999999999999988875 454443 3789999999999988 5999999999999999
Q ss_pred cChHHHH
Q 000755 822 GKYNDIL 828 (1300)
Q Consensus 822 g~~~~l~ 828 (1300)
|+++++.
T Consensus 227 ~~~~~~~ 233 (241)
T cd03256 227 GPPAELT 233 (241)
T ss_pred cCHHHhh
Confidence 9988863
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=370.72 Aligned_cols=211 Identities=23% Similarity=0.340 Sum_probs=181.2
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCC--CcceEEECCeecCCCCHHH-Hhc
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEP--TAGEIVIDGINISSIGLHD-LRS 1130 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p--~~G~I~idg~di~~i~~~~-lr~ 1130 (1300)
.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++...+..+ .|+
T Consensus 5 ~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (506)
T PRK13549 5 LLEMKNITKTFGG--VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA 82 (506)
T ss_pred eEEEeeeEEEeCC--eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence 5899999999974 3599999999999999999999999999999999999996 8999999999998776554 457
Q ss_pred ccEEEcCCCCCCcc-cHHHhcCCCCC------CC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHH
Q 000755 1131 RLSIIPQDPTMFEG-TVRNNLDPLEE------YK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQL 1199 (1300)
Q Consensus 1131 ~i~~vpQ~~~lf~g-Tvr~Nl~~~~~------~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQr 1199 (1300)
+++|+||++.+|.. |+++|+.+... .. .+++.++++.+++.+.. .....+||||||||
T Consensus 83 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGqkqr 151 (506)
T PRK13549 83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINP-----------ATPVGNLGLGQQQL 151 (506)
T ss_pred CeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCc-----------ccchhhCCHHHHHH
Confidence 79999999988865 99999964311 12 13456677777764322 22346799999999
Q ss_pred HHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHH
Q 000755 1200 VCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLL 1277 (1300)
Q Consensus 1200 l~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~ 1277 (1300)
++|||||+.+|+||||||||++||+.+...+.+.|++.. ++.|||+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 152 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 231 (506)
T PRK13549 152 VEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMT 231 (506)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCC
Confidence 999999999999999999999999999999999998864 46899999999999987 9999999999999999988764
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=332.29 Aligned_cols=196 Identities=34% Similarity=0.467 Sum_probs=163.1
Q ss_pred EEEEeEEEEecCCC-CCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC--------eEEEEec
Q 000755 617 IEIVDGNFAWDISS-NNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--------TKAYVAQ 687 (1300)
Q Consensus 617 I~i~~~~fs~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g--------~~ayv~Q 687 (1300)
++++|++++|+... .+++|+|+||+|++|++++|+|+||||||||+++|+|.++|++|+|.++| .++|++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 46899999996311 14799999999999999999999999999999999999999999999987 3799999
Q ss_pred CCcCCC-CCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHHHHHccC
Q 000755 688 SPWIQS-GNIEDNILFGKP---MD----REKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQD 759 (1300)
Q Consensus 688 ~~~l~~-~Ti~eNI~fg~~---~~----~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLARAly~~ 759 (1300)
++.++. .|++||+.++.. .+ .++..+.++..++.+.+ .....+||||||||++||||++.+
T Consensus 81 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrl~la~al~~~ 149 (220)
T cd03293 81 QDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFE-----------NAYPHQLSGGMRQRVALARALAVD 149 (220)
T ss_pred ccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhh-----------hCCcccCCHHHHHHHHHHHHHHcC
Confidence 998876 799999987532 11 23445556666654433 334468999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEecCCCcccc-CCEEEEEe--CCeEEEecCh
Q 000755 760 ADIYLFDDPFSAVDAHTGSHLFKEVLLGLL--RSKTVIYVTHQVEFLPA-ADLILVMK--DGKITQAGKY 824 (1300)
Q Consensus 760 ~~illLDep~saLD~~t~~~i~~~~~~~~l--~~~TvIlvtH~~~~l~~-~d~i~~l~--~G~i~~~g~~ 824 (1300)
|+++||||||++||+.+...+++ .+..+. .++|+|++||+++.+.. ||+|++|+ +|++++.++.
T Consensus 150 p~lllLDEPt~~LD~~~~~~~~~-~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 150 PDVLLLDEPFSALDALTREQLQE-ELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CCEEEECCCCCCCCHHHHHHHHH-HHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 99999999999999999998875 444442 37899999999998764 99999999 7999988764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=371.77 Aligned_cols=212 Identities=22% Similarity=0.320 Sum_probs=181.9
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHH-hccc
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDL-RSRL 1132 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~l-r~~i 1132 (1300)
.|+++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.... |+++
T Consensus 5 ~l~~~~l~~~~~~~--~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 82 (510)
T PRK09700 5 YISMAGIGKSFGPV--HALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGI 82 (510)
T ss_pred eEEEeeeEEEcCCe--EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCe
Confidence 58999999999753 59999999999999999999999999999999999999999999999999987776553 4579
Q ss_pred EEEcCCCCCCcc-cHHHhcCCCC-------CC---C----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHH
Q 000755 1133 SIIPQDPTMFEG-TVRNNLDPLE-------EY---K----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQR 1197 (1300)
Q Consensus 1133 ~~vpQ~~~lf~g-Tvr~Nl~~~~-------~~---~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqr 1197 (1300)
+|+||++.+|.. |+++|+.... .. . .+++.++++.+++.+.. + ....+||||||
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-------~----~~~~~LSgG~~ 151 (510)
T PRK09700 83 GIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDL-------D----EKVANLSISHK 151 (510)
T ss_pred EEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCc-------c----cchhhCCHHHH
Confidence 999999988875 9999986421 10 1 13456677777764322 2 23357999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhh
Q 000755 1198 QLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTK 1275 (1300)
Q Consensus 1198 Qrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~ 1275 (1300)
||++|||||+.+|++|||||||++||+.+...+.+.|++.. ++.|||+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 152 qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 231 (510)
T PRK09700 152 QMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSD 231 (510)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhh
Confidence 99999999999999999999999999999999999998864 36899999999999987 99999999999999999988
Q ss_pred HHh
Q 000755 1276 LLE 1278 (1300)
Q Consensus 1276 l~~ 1278 (1300)
+..
T Consensus 232 ~~~ 234 (510)
T PRK09700 232 VSN 234 (510)
T ss_pred CCH
Confidence 753
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=370.09 Aligned_cols=211 Identities=22% Similarity=0.301 Sum_probs=180.2
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHH-Hhccc
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHD-LRSRL 1132 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~-lr~~i 1132 (1300)
.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... .|+++
T Consensus 4 ~i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 81 (501)
T PRK10762 4 LLQLKGIDKAFPG--VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81 (501)
T ss_pred eEEEeeeEEEeCC--eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 4899999999975 35999999999999999999999999999999999999999999999999987655444 35679
Q ss_pred EEEcCCCCCCcc-cHHHhcCCCC-------CCCH----HHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHH
Q 000755 1133 SIIPQDPTMFEG-TVRNNLDPLE-------EYKD----EEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLV 1200 (1300)
Q Consensus 1133 ~~vpQ~~~lf~g-Tvr~Nl~~~~-------~~~d----~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl 1200 (1300)
+|+||++.+|.. |+++|+.+.. .... +++.++++++++.+.. + ....+||||||||+
T Consensus 82 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~----~~~~~LSgG~~qrv 150 (501)
T PRK10762 82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSS-------D----KLVGELSIGEQQMV 150 (501)
T ss_pred EEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCc-------c----CchhhCCHHHHHHH
Confidence 999999988865 9999996421 1111 2455677777764432 2 23357999999999
Q ss_pred HHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHH
Q 000755 1201 CLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLL 1277 (1300)
Q Consensus 1201 ~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~ 1277 (1300)
+|||||+.+|++|||||||++||+.+.+.+.+.|++.. .+.|||+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 151 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (501)
T PRK10762 151 EIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLT 229 (501)
T ss_pred HHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCC
Confidence 99999999999999999999999999999999998864 36899999999999987 9999999999999999988764
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-36 Score=325.56 Aligned_cols=194 Identities=24% Similarity=0.331 Sum_probs=168.3
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEE
Q 000755 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSI 1134 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~ 1134 (1300)
++++|++++|++. .+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.... ..+|++++|
T Consensus 1 l~i~~l~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (201)
T cd03231 1 LEADELTCERDGR--ALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLLY 77 (201)
T ss_pred CEEEEEEEEeCCc--eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheEE
Confidence 4789999999753 5899999999999999999999999999999999999999999999999986543 467889999
Q ss_pred EcCCCCCC-cccHHHhcCCCC-CCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCE
Q 000755 1135 IPQDPTMF-EGTVRNNLDPLE-EYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKV 1212 (1300)
Q Consensus 1135 vpQ~~~lf-~gTvr~Nl~~~~-~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~~i 1212 (1300)
+||++.++ ..|+++|+.... ...++++.++++.+++.+...+ ...+||||||||++||||++++|++
T Consensus 78 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~laral~~~p~l 146 (201)
T cd03231 78 LGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDR-----------PVAQLSAGQQRRVALARLLLSGRPL 146 (201)
T ss_pred eccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcC-----------chhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999876 469999986542 3356678889999988654322 2357999999999999999999999
Q ss_pred EEEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhc-cCEEEEE
Q 000755 1213 LVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVID-SDMVLLL 1262 (1300)
Q Consensus 1213 LlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~-~D~v~vl 1262 (1300)
|||||||++||+.+.+.+.+.|++.. +++|+|++||+...+.. ||+++++
T Consensus 147 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 147 WILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 99999999999999999999998764 47899999999887766 9999887
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-36 Score=330.93 Aligned_cols=198 Identities=25% Similarity=0.451 Sum_probs=167.1
Q ss_pred EEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe------------EEE
Q 000755 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------KAY 684 (1300)
Q Consensus 617 I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~------------~ay 684 (1300)
++++|+++.|+.. .+++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|. ++|
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEE
Confidence 4689999999632 257999999999999999999999999999999999999999999999873 689
Q ss_pred EecCCcCC-CCCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHHHHH
Q 000755 685 VAQSPWIQ-SGNIEDNILFGKP---MD----REKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARAL 756 (1300)
Q Consensus 685 v~Q~~~l~-~~Ti~eNI~fg~~---~~----~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLARAl 756 (1300)
++|++.++ +.|++||+.++.. .. .++++++++.+++.+.. .....+||||||||++||||+
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la~al 148 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKA-----------NKRARTLSGGMKRKLSLAIAL 148 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-----------hChhhhCCHHHHHHHHHHHHH
Confidence 99999887 6799999987421 22 23455666666664332 334568999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHH
Q 000755 757 YQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDI 827 (1300)
Q Consensus 757 y~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 827 (1300)
+.+|+++||||||++||+.+.+.+.+ .+..+.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 149 ~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 149 IGGPSVLLLDEPTSGLDPASRRAIWD-LILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred hcCCCEEEECCCCCCCCHHHHHHHHH-HHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 99999999999999999999888865 55555567999999999999865 999999999999999988764
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-36 Score=327.22 Aligned_cols=191 Identities=26% Similarity=0.390 Sum_probs=163.8
Q ss_pred EEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe-----------EEEE
Q 000755 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KAYV 685 (1300)
Q Consensus 617 I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-----------~ayv 685 (1300)
++++|++++|+ +.++|+|+||++++|++++|+|+||||||||+++|+|..+|++|+|.++|. ++|+
T Consensus 1 l~~~~l~~~~~---~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 77 (208)
T cd03268 1 LKTNDLTKTYG---KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGAL 77 (208)
T ss_pred CEEEEEEEEEC---CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEe
Confidence 46899999995 357999999999999999999999999999999999999999999999873 7899
Q ss_pred ecCCcCC-CCCHHHHHhcCCC---CCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHHHHHccCCC
Q 000755 686 AQSPWIQ-SGNIEDNILFGKP---MDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDAD 761 (1300)
Q Consensus 686 ~Q~~~l~-~~Ti~eNI~fg~~---~~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLARAly~~~~ 761 (1300)
+|++.++ +.|++||+.++.. .++++.+++++..++.+.+ ......||||||||++||||++.+|+
T Consensus 78 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la~al~~~p~ 146 (208)
T cd03268 78 IEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSA-----------KKKVKGFSLGMKQRLGIALALLGNPD 146 (208)
T ss_pred cCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHH-----------hhhHhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999876 5799999987532 3455666777777665433 34457899999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCCCcccc-CCEEEEEeCCeEEEec
Q 000755 762 IYLFDDPFSAVDAHTGSHLFKEVLLGLL-RSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAG 822 (1300)
Q Consensus 762 illLDep~saLD~~t~~~i~~~~~~~~l-~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g 822 (1300)
++||||||++||+.+.+.+.+ .+.... +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 147 llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 147 LLILDEPTNGLDPDGIKELRE-LILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred EEEECCCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999888875 444433 57999999999999875 9999999999998764
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=333.73 Aligned_cols=190 Identities=26% Similarity=0.406 Sum_probs=162.8
Q ss_pred eeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEEEcCCCCCCc-ccHHHhc
Q 000755 1072 LRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDPTMFE-GTVRNNL 1150 (1300)
Q Consensus 1072 L~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~vpQ~~~lf~-gTvr~Nl 1150 (1300)
|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+. +.+|+||++.+|. .|+++|+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHH
Confidence 579999999999999999999999999999999999999999999999876443 2489999999887 5999998
Q ss_pred CCC-----CCCCH----HHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCcC
Q 000755 1151 DPL-----EEYKD----EEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATAS 1221 (1300)
Q Consensus 1151 ~~~-----~~~~d----~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~~iLlLDEpTs~ 1221 (1300)
... ....+ +.+.++++.+++.+...+ ....||||||||++|||||+.+|++|||||||++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 144 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADK-----------RPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGA 144 (230)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcC-----------ChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 542 12222 235667888877554332 3457899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhc--CCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHH
Q 000755 1222 VDTATDNLIQQTLRQHF--SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLL 1277 (1300)
Q Consensus 1222 lD~~t~~~i~~~l~~~~--~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~ 1277 (1300)
||+.+.+.+.+.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|++.+++
T Consensus 145 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 203 (230)
T TIGR01184 145 LDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEVP 203 (230)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceecc
Confidence 99999999999998864 26899999999999887 9999999999999999876663
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=331.16 Aligned_cols=190 Identities=33% Similarity=0.459 Sum_probs=158.1
Q ss_pred EEEEeEEEEecCCC-CCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC---------------
Q 000755 617 IEIVDGNFAWDISS-NNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--------------- 680 (1300)
Q Consensus 617 I~i~~~~fs~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g--------------- 680 (1300)
++++|++++|+... .+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 46899999996321 15799999999999999999999999999999999999999999998875
Q ss_pred --eEEEEecCCcCCCC-CHHHHHhcCCCC---C----HHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHH
Q 000755 681 --TKAYVAQSPWIQSG-NIEDNILFGKPM---D----REKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRI 750 (1300)
Q Consensus 681 --~~ayv~Q~~~l~~~-Ti~eNI~fg~~~---~----~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRi 750 (1300)
.++|++|++.++.. |++||+.++... + ++++.++++..++.+ .......+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGD-----------RLNHYPSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCch-----------hhhcChhhcCHHHHHHH
Confidence 37999999988875 999999986431 1 223444555554433 33455678999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEecCCCccccCCEEEEEeCCeE
Q 000755 751 QIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL--RSKTVIYVTHQVEFLPAADLILVMKDGKI 818 (1300)
Q Consensus 751 aLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l--~~~TvIlvtH~~~~l~~~d~i~~l~~G~i 818 (1300)
+||||++.+|+++||||||++||+.+.+.+.+ .+..+. .++|+|++||+++.+..||+|++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~-~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVME-LLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 99999999999999999999999999888865 555543 37899999999998878999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-36 Score=336.59 Aligned_cols=210 Identities=21% Similarity=0.260 Sum_probs=168.5
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCC--CCCcceEEECCeecCCCCHHHHh-cc
Q 000755 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIV--EPTAGEIVIDGINISSIGLHDLR-SR 1131 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~--~p~~G~I~idg~di~~i~~~~lr-~~ 1131 (1300)
|+++|++++|++. ++|+|+||+|++||++||+|+||||||||+++|+|++ +|++|+|.+||.++...+....+ ..
T Consensus 2 i~~~nl~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (248)
T PRK09580 2 LSIKDLHVSVEDK--AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEG 79 (248)
T ss_pred eEEEEEEEEeCCe--eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcc
Confidence 7899999999753 5999999999999999999999999999999999995 69999999999998877766554 56
Q ss_pred cEEEcCCCCCCcc-cHHHhcC-------CCCC---CC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCC-CCCChh
Q 000755 1132 LSIIPQDPTMFEG-TVRNNLD-------PLEE---YK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENG-ENWSMG 1195 (1300)
Q Consensus 1132 i~~vpQ~~~lf~g-Tvr~Nl~-------~~~~---~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G-~~LSgG 1195 (1300)
++|++|++.++.. |..+++. .... .. ++.+.+.++..++.+ ++.+ ... .+||||
T Consensus 80 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~---~~~~~~LS~G 149 (248)
T PRK09580 80 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPE-------DLLT---RSVNVGFSGG 149 (248)
T ss_pred eEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCCh-------hhcc---cCCCCCCCHH
Confidence 9999999987654 4444332 1110 01 112233444444421 1111 112 369999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC-CcEEEEEeCChhhhhc--cCEEEEEeCCEEEEecC
Q 000755 1196 QRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS-DCTVITIAHRITSVID--SDMVLLLSHGIIEEYDS 1272 (1300)
Q Consensus 1196 qrQrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~-~~Tvi~iaHrl~~i~~--~D~v~vl~~G~i~e~g~ 1272 (1300)
||||++||||++++|+||||||||++||+.+.+.+.+.|++..+ ++|||++||+++.+.. ||+|++|++|++++.|+
T Consensus 150 ~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~ 229 (248)
T PRK09580 150 EKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGD 229 (248)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCC
Confidence 99999999999999999999999999999999999999987654 6899999999999987 79999999999999999
Q ss_pred hhhH
Q 000755 1273 PTKL 1276 (1300)
Q Consensus 1273 ~~~l 1276 (1300)
++..
T Consensus 230 ~~~~ 233 (248)
T PRK09580 230 FTLV 233 (248)
T ss_pred HHHH
Confidence 8754
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-36 Score=350.76 Aligned_cols=202 Identities=25% Similarity=0.390 Sum_probs=169.0
Q ss_pred EEEEeEEEEecCCC-CCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC---------------
Q 000755 617 IEIVDGNFAWDISS-NNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--------------- 680 (1300)
Q Consensus 617 I~i~~~~fs~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g--------------- 680 (1300)
|+++|++++|+... +.++|+|+||+|++||+++|+|+||||||||+++|+|.++|++|+|.++|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 68999999996322 35799999999999999999999999999999999999999999999886
Q ss_pred -eEEEEecCCcCCC-CCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHH
Q 000755 681 -TKAYVAQSPWIQS-GNIEDNILFGKP---MDR----EKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQ 751 (1300)
Q Consensus 681 -~~ayv~Q~~~l~~-~Ti~eNI~fg~~---~~~----~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRia 751 (1300)
.++|++|++.++. .|++||+.++.. .+. ++..+.++..++.+ .......+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-----------~~~~~~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSD-----------KADRYPAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-----------hhhCChhhCCHHHHHHHH
Confidence 2799999999875 799999988632 222 23334444444432 234556789999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHHH
Q 000755 752 IARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL--RSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDIL 828 (1300)
Q Consensus 752 LARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l--~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 828 (1300)
|||||+++|+++||||||++||+.+...+.+ .+..+. .++|+|++||+++.+.. ||+|++|++|++++.|+.+++.
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~-~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILE-LLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVF 229 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999988875 454443 37899999999999875 9999999999999999999886
Q ss_pred hc
Q 000755 829 NS 830 (1300)
Q Consensus 829 ~~ 830 (1300)
..
T Consensus 230 ~~ 231 (343)
T PRK11153 230 SH 231 (343)
T ss_pred hC
Confidence 54
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=338.87 Aligned_cols=202 Identities=30% Similarity=0.471 Sum_probs=172.6
Q ss_pred eEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe-------------E
Q 000755 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------K 682 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-------------~ 682 (1300)
.++++|++++|+. ..+++|+|+||+|++||+++|+|+||||||||+++|+|.++|++|+|.++|. +
T Consensus 5 ~l~~~~l~~~~~~-~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPD-AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCC-CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 5899999999963 2357999999999999999999999999999999999999999999999883 6
Q ss_pred EEEecCC--cCCCCCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHH
Q 000755 683 AYVAQSP--WIQSGNIEDNILFGKP---MDR----EKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIA 753 (1300)
Q Consensus 683 ayv~Q~~--~l~~~Ti~eNI~fg~~---~~~----~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLA 753 (1300)
+|++|+| .+++.|+.|||.++.. .++ ++..++++.++|...++. ...+||||||||++||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~LS~G~~qrv~la 152 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNR-----------EPHRLSGGQKQRVAIA 152 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhC-----------CcccCCHHHHHHHHHH
Confidence 8999998 4667899999998632 222 345666677777655443 3458999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcC--CcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHhc
Q 000755 754 RALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLR--SKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNS 830 (1300)
Q Consensus 754 RAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~--~~TvIlvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 830 (1300)
||++.+|+++||||||++||+.+...+++ ++..+.+ ++|+|++||+++.+..||+|++|++|++++.|+.+++...
T Consensus 153 ral~~~p~lllLDEPt~gLD~~~~~~l~~-~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 153 GVLALQPDIIILDEATSMLDPRGRREVLE-TVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999988875 4555443 7899999999999888999999999999999999887654
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=331.71 Aligned_cols=199 Identities=24% Similarity=0.425 Sum_probs=168.0
Q ss_pred EEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe------------EEE
Q 000755 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------KAY 684 (1300)
Q Consensus 617 I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~------------~ay 684 (1300)
++++|++++|+ ++++|+|+||+|++|++++|+|+||||||||+++|+|.++|++|+|.++|. ++|
T Consensus 2 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~ 78 (236)
T TIGR03864 2 LEVAGLSFAYG---ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGV 78 (236)
T ss_pred EEEEeeEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEE
Confidence 67899999996 357999999999999999999999999999999999999999999998873 689
Q ss_pred EecCCcC-CCCCHHHHHhcCCC---CCHH----HHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHHHHH
Q 000755 685 VAQSPWI-QSGNIEDNILFGKP---MDRE----KYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARAL 756 (1300)
Q Consensus 685 v~Q~~~l-~~~Ti~eNI~fg~~---~~~~----~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLARAl 756 (1300)
++|++.+ +..|++||+.++.. ...+ +..+.++.. |.....+....+||||||||++||||+
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LS~G~~qrl~laral 147 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARL-----------GLAERADDKVRELNGGHRRRVEIARAL 147 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CChhhhcCChhhCCHHHHHHHHHHHHH
Confidence 9999987 56899999987532 2222 222333333 333345667789999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHhc
Q 000755 757 YQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL--RSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNS 830 (1300)
Q Consensus 757 y~~~~illLDep~saLD~~t~~~i~~~~~~~~l--~~~TvIlvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 830 (1300)
+.+|+++||||||++||+.+.+.+.+ .+..+. +++|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 148 ~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 148 LHRPALLLLDEPTVGLDPASRAAIVA-HVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHH-HHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 99999999999999999999988875 455443 47899999999999888999999999999999999888754
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=312.69 Aligned_cols=159 Identities=29% Similarity=0.510 Sum_probs=147.7
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHH-HHhcccE
Q 000755 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLH-DLRSRLS 1133 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~-~lr~~i~ 1133 (1300)
|+++|++++|++. ++++++||++++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+.. ..|++++
T Consensus 1 l~~~~l~~~~~~~--~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~ 78 (163)
T cd03216 1 LELRGITKRFGGV--KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIA 78 (163)
T ss_pred CEEEEEEEEECCe--EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeE
Confidence 4789999999753 599999999999999999999999999999999999999999999999999877654 4577899
Q ss_pred EEcCCCCCCcccHHHhcCCCCCCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCEE
Q 000755 1134 IIPQDPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVL 1213 (1300)
Q Consensus 1134 ~vpQ~~~lf~gTvr~Nl~~~~~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~~iL 1213 (1300)
|+|| ||+|||||++||||++++|++|
T Consensus 79 ~~~q------------------------------------------------------LS~G~~qrl~laral~~~p~il 104 (163)
T cd03216 79 MVYQ------------------------------------------------------LSVGERQMVEIARALARNARLL 104 (163)
T ss_pred EEEe------------------------------------------------------cCHHHHHHHHHHHHHhcCCCEE
Confidence 9999 7999999999999999999999
Q ss_pred EEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhc-cCEEEEEeCCEEEE
Q 000755 1214 VLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGIIEE 1269 (1300)
Q Consensus 1214 lLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e 1269 (1300)
+|||||++||+.+.+.+.+.|++.. ++.|+|++||+++.+.. ||++++|++|++++
T Consensus 105 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 105 ILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999864 47899999999998877 99999999999975
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-36 Score=329.59 Aligned_cols=198 Identities=27% Similarity=0.449 Sum_probs=163.9
Q ss_pred EEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC--------------eE
Q 000755 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--------------TK 682 (1300)
Q Consensus 617 I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g--------------~~ 682 (1300)
|+++|++++|+ +.++++|+||++++|++++|+||||||||||+++|+|.++|++|+|.++| .+
T Consensus 1 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYG---KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecC---CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 46899999996 24799999999999999999999999999999999999999999999876 26
Q ss_pred EEEecCCcCCCC-CHHHHHhcCCCCC--H---HHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHHHHH
Q 000755 683 AYVAQSPWIQSG-NIEDNILFGKPMD--R---EKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARAL 756 (1300)
Q Consensus 683 ayv~Q~~~l~~~-Ti~eNI~fg~~~~--~---~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLARAl 756 (1300)
+|++|++.++.. |++||+.++.... . ++..++++... +.......+..+||||||||++||||+
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~laral 147 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFP----------RLKERRKQLAGTLSGGEQQMLAIARAL 147 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHH----------hhhhhhhCchhhCCHHHHHHHHHHHHH
Confidence 999999988875 9999999875421 1 12222232221 112234566788999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHHH
Q 000755 757 YQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-RSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDIL 828 (1300)
Q Consensus 757 y~~~~illLDep~saLD~~t~~~i~~~~~~~~l-~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 828 (1300)
..+|+++||||||++||+.+...+.+ ++..+. +++|+|++||+++.+.. ||+|++|++|++++.|+.+++.
T Consensus 148 ~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 148 MSRPKLLLLDEPSEGLAPKIVEEIFE-AIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred hcCCCEEEECCCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 99999999999999999999888875 454443 57899999999998765 9999999999999999887764
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=335.84 Aligned_cols=205 Identities=29% Similarity=0.435 Sum_probs=172.6
Q ss_pred ceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhcccc-----CCccEEEEcC---------
Q 000755 615 TAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVP-----KISGTLKLCG--------- 680 (1300)
Q Consensus 615 ~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~-----~~~G~i~~~g--------- 680 (1300)
..++++|++++|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|.++ |++|+|.++|
T Consensus 12 ~~l~~~~l~~~~~---~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~ 88 (260)
T PRK10744 12 SKIQVRNLNFYYG---KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88 (260)
T ss_pred ceEEEEEEEEEeC---CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence 4689999999996 2479999999999999999999999999999999999986 5899998876
Q ss_pred ------eEEEEecCCcCCCCCHHHHHhcCCC----CCH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHH
Q 000755 681 ------TKAYVAQSPWIQSGNIEDNILFGKP----MDR----EKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQ 746 (1300)
Q Consensus 681 ------~~ayv~Q~~~l~~~Ti~eNI~fg~~----~~~----~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQ 746 (1300)
.++|++|++.++..|++||+.++.. .+. ++.+++++..++..++. ..+++...+|||||
T Consensus 89 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq 161 (260)
T PRK10744 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVK-------DKLHQSGYSLSGGQ 161 (260)
T ss_pred hHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-------HHHhcCCCCCCHHH
Confidence 2689999999988999999987632 222 34455566665543332 23466788999999
Q ss_pred HHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChH
Q 000755 747 KQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYN 825 (1300)
Q Consensus 747 kqRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 825 (1300)
|||++||||++.+|+++||||||++||+.+.+.+.+ .+..+.+++|+|++||+++.+.. ||+|++|++|++++.|+.+
T Consensus 162 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 240 (260)
T PRK10744 162 QQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEE-LITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTD 240 (260)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHH-HHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999888765 55555567899999999998865 9999999999999999999
Q ss_pred HHHhc
Q 000755 826 DILNS 830 (1300)
Q Consensus 826 ~l~~~ 830 (1300)
++...
T Consensus 241 ~~~~~ 245 (260)
T PRK10744 241 TIFTK 245 (260)
T ss_pred HHHhC
Confidence 88653
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-36 Score=331.25 Aligned_cols=196 Identities=25% Similarity=0.366 Sum_probs=163.7
Q ss_pred eEEEEeEEEEecCCC-CCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC--------------
Q 000755 616 AIEIVDGNFAWDISS-NNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-------------- 680 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g-------------- 680 (1300)
.++++|++|+|+... ..++|+|+||+|++||+++|+|+||||||||+++|+|.++|++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999996322 14799999999999999999999999999999999999999999999876
Q ss_pred ---eEEEEecCCcCCCC-CHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHH
Q 000755 681 ---TKAYVAQSPWIQSG-NIEDNILFGKP---MDR----EKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQR 749 (1300)
Q Consensus 681 ---~~ayv~Q~~~l~~~-Ti~eNI~fg~~---~~~----~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqR 749 (1300)
.++|++|++.++.. |++||+.++.. .+. ++..++++.+++. ........+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLE-----------HRANHRPSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-----------hhhhCChhhCCHHHHHH
Confidence 27899999988764 99999987421 222 2344555555443 23345667899999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEecCCCccccCCEEEEEeCCeEEEecC
Q 000755 750 IQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL--RSKTVIYVTHQVEFLPAADLILVMKDGKITQAGK 823 (1300)
Q Consensus 750 iaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l--~~~TvIlvtH~~~~l~~~d~i~~l~~G~i~~~g~ 823 (1300)
++||||++.+|+++||||||++||+.+...+.+ .+..+. +++|+|++||+++.+..+|++++|++|+|++.|+
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQ-LLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999888865 455442 4799999999999998889999999999998765
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=337.65 Aligned_cols=199 Identities=30% Similarity=0.485 Sum_probs=168.4
Q ss_pred EEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe--------------E
Q 000755 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--------------K 682 (1300)
Q Consensus 617 I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~--------------~ 682 (1300)
++++|++++|+. +.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|. +
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 688999999952 356999999999999999999999999999999999999999999998862 6
Q ss_pred EEEecCCc--CCCCCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHH
Q 000755 683 AYVAQSPW--IQSGNIEDNILFGKP---MDR----EKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIA 753 (1300)
Q Consensus 683 ayv~Q~~~--l~~~Ti~eNI~fg~~---~~~----~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLA 753 (1300)
+|++|+|. +++.|+.|||.|+.. .+. ++.+++++.+++... .......||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qrv~la 148 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKY-----------RHRSPKTLSGGQGQCVALA 148 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHH-----------hcCCcccCCHHHHHHHHHH
Confidence 89999986 567899999998642 222 334455555555433 3445678999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhh-cCCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHh
Q 000755 754 RALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILN 829 (1300)
Q Consensus 754 RAly~~~~illLDep~saLD~~t~~~i~~~~~~~~-l~~~TvIlvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 829 (1300)
||++.+|+++||||||++||+.+...+++. +..+ .+++|+|++||+++.+..||+|++|++|++++.|+.+++..
T Consensus 149 ral~~~p~lllLDEPt~gLD~~~~~~l~~~-l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 224 (274)
T PRK13644 149 GILTMEPECLIFDEVTSMLDPDSGIAVLER-IKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLS 224 (274)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999999999999998888754 4443 34899999999999998899999999999999999988764
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-36 Score=331.29 Aligned_cols=198 Identities=26% Similarity=0.405 Sum_probs=165.1
Q ss_pred EEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe--------------E
Q 000755 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--------------K 682 (1300)
Q Consensus 617 I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~--------------~ 682 (1300)
++++|++++|+ ++++|+|+||++++|++++|+|+||||||||+++|+|.++|++|+|.++|. +
T Consensus 1 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYG---KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeC---CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 46899999996 346999999999999999999999999999999999999999999998762 6
Q ss_pred EEEecCCcCCCC-CHHHHHhcCCC---CCHH----HHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHHH
Q 000755 683 AYVAQSPWIQSG-NIEDNILFGKP---MDRE----KYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIAR 754 (1300)
Q Consensus 683 ayv~Q~~~l~~~-Ti~eNI~fg~~---~~~~----~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLAR 754 (1300)
+|++|++.++.. |++||+.++.+ ...+ +.++.++..+ ..........+||||||||++|||
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrl~la~ 146 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFH-----------ITHLRKSKASSLSGGERRRVEIAR 146 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-----------ChhhhhCChhhCCHHHHHHHHHHH
Confidence 899999988875 99999987532 1211 2223333333 333445667899999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHHHh
Q 000755 755 ALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-RSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDILN 829 (1300)
Q Consensus 755 Aly~~~~illLDep~saLD~~t~~~i~~~~~~~~l-~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 829 (1300)
|+..+|+++||||||++||+.+.+.+.+ .+.... .++|+|++||+++.+.. ||+|++|++|++++.|+.+++..
T Consensus 147 al~~~p~llllDEPt~~LD~~~~~~~~~-~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 147 ALATNPKFLLLDEPFAGVDPIAVQDIQK-IIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 9999999999999999999999888865 444443 47899999999987665 99999999999999999888754
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-36 Score=327.85 Aligned_cols=188 Identities=34% Similarity=0.540 Sum_probs=157.7
Q ss_pred EEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe--------EEEEecCCc
Q 000755 619 IVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--------KAYVAQSPW 690 (1300)
Q Consensus 619 i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~--------~ayv~Q~~~ 690 (1300)
++|++++|+. .++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|. ++|++|++.
T Consensus 2 ~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~ 78 (213)
T cd03235 2 VEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRS 78 (213)
T ss_pred cccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccc
Confidence 6789999962 46999999999999999999999999999999999999999999999883 799999987
Q ss_pred C---CCCCHHHHHhcCCCC-----------CHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHHHHH
Q 000755 691 I---QSGNIEDNILFGKPM-----------DREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARAL 756 (1300)
Q Consensus 691 l---~~~Ti~eNI~fg~~~-----------~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLARAl 756 (1300)
+ ++.|++||+.++... .+++.+++++.+++.+.++ ....+||||||||++||||+
T Consensus 79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~la~al 147 (213)
T cd03235 79 IDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELAD-----------RQIGELSGGQQQRVLLARAL 147 (213)
T ss_pred cccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHh-----------CCcccCCHHHHHHHHHHHHH
Confidence 6 558999999876431 1234566667666654432 34568999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCCCcccc-CCEEEEEeCCeEEEec
Q 000755 757 YQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-RSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAG 822 (1300)
Q Consensus 757 y~~~~illLDep~saLD~~t~~~i~~~~~~~~l-~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g 822 (1300)
..+|+++||||||++||+.+...+.+ .+..+. +++|+|++||+++++.. ||+|++|++| +++.|
T Consensus 148 ~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 148 VQDPDLLLLDEPFAGVDPKTQEDIYE-LLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999999999888865 444443 67899999999999865 9999999886 55543
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=301.07 Aligned_cols=197 Identities=26% Similarity=0.408 Sum_probs=174.0
Q ss_pred eeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEEEcCCCCCC
Q 000755 1063 RYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDPTMF 1142 (1300)
Q Consensus 1063 ~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~vpQ~~~lf 1142 (1300)
.|.....++|+++||++++||.++|+||||||||||+++++-+..|++|++++.|.|++..+++.+|++++|+.|.|.||
T Consensus 10 ~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLf 89 (223)
T COG4619 10 GYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALF 89 (223)
T ss_pred HhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCcccc
Confidence 45544567999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHhcCCC-----CCCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEeC
Q 000755 1143 EGTVRNNLDPL-----EEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDE 1217 (1300)
Q Consensus 1143 ~gTvr~Nl~~~-----~~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~~iLlLDE 1217 (1300)
.+||.+|+-+- ...+.....+.|+++++.+.+ +..+..+||||||||++|+|-|---|+||+|||
T Consensus 90 g~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~----------L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE 159 (223)
T COG4619 90 GDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSI----------LTKNITELSGGEKQRIALIRNLQFMPKILLLDE 159 (223)
T ss_pred ccchhhccccchHHhccCCChHHHHHHHHHcCCchhh----------hcchhhhccchHHHHHHHHHHhhcCCceEEecC
Confidence 99999998532 233444566778888876654 334557899999999999999999999999999
Q ss_pred CCcCCCHHHHHHHHHHHHHhcC--CcEEEEEeCChhh-hhccCEEEEEeCCEEEE
Q 000755 1218 ATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITS-VIDSDMVLLLSHGIIEE 1269 (1300)
Q Consensus 1218 pTs~lD~~t~~~i~~~l~~~~~--~~Tvi~iaHrl~~-i~~~D~v~vl~~G~i~e 1269 (1300)
|||+||+.+.+.|.+.|.++++ +.+++.|||+-+. +..+|+++-+..|++-+
T Consensus 160 ~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~~ 214 (223)
T COG4619 160 ITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAGE 214 (223)
T ss_pred chhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcccc
Confidence 9999999999999999999873 5899999999998 55699999999997643
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=331.16 Aligned_cols=201 Identities=28% Similarity=0.439 Sum_probs=166.5
Q ss_pred EEEEeEEEEecCCC-CCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe--------------
Q 000755 617 IEIVDGNFAWDISS-NNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 681 (1300)
Q Consensus 617 I~i~~~~fs~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-------------- 681 (1300)
|+++|++++|+... ..++|+|+||+|++||+++|+||||||||||+++|+|.++|++|+|.++|.
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 68899999996321 127999999999999999999999999999999999999999999998762
Q ss_pred --EEEEecCCcCCC-CCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHH
Q 000755 682 --KAYVAQSPWIQS-GNIEDNILFGKP---MDR----EKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQ 751 (1300)
Q Consensus 682 --~ayv~Q~~~l~~-~Ti~eNI~fg~~---~~~----~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRia 751 (1300)
++|++|++.++. .|++||+.++.. .+. ++..+.++..++.+ .......+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLED-----------KADAYPAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChh-----------hhhcChhhCCHHHHHHHH
Confidence 689999999886 699999987532 222 23344444444432 234456789999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc-C-CcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHHH
Q 000755 752 IARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-R-SKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDIL 828 (1300)
Q Consensus 752 LARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l-~-~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 828 (1300)
||||+..+|+++||||||++||+.+...+++ ++..+. + ++|+|++||+++.+.. ||++++|++|++++.|+.+++.
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~-~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILA-LLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVF 229 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999999999888865 454443 3 7899999999999765 9999999999999999988775
Q ss_pred h
Q 000755 829 N 829 (1300)
Q Consensus 829 ~ 829 (1300)
+
T Consensus 230 ~ 230 (233)
T cd03258 230 A 230 (233)
T ss_pred c
Confidence 4
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=336.77 Aligned_cols=207 Identities=25% Similarity=0.404 Sum_probs=173.7
Q ss_pred CcceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccC-----CccEEEEcC-------
Q 000755 613 SETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK-----ISGTLKLCG------- 680 (1300)
Q Consensus 613 ~~~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~-----~~G~i~~~g------- 680 (1300)
.+..|+++|++++|+ ++++|+|+||+|++|++++|+|+||||||||+++|+|+++| ++|+|.++|
T Consensus 16 ~~~~l~~~nl~~~~~---~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~ 92 (267)
T PRK14235 16 TEIKMRARDVSVFYG---EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPR 92 (267)
T ss_pred CCceEEEEeEEEEEC---CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccc
Confidence 345799999999996 25799999999999999999999999999999999999975 899999876
Q ss_pred --------eEEEEecCCcCCCCCHHHHHhcCCC---C--C----HHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCC
Q 000755 681 --------TKAYVAQSPWIQSGNIEDNILFGKP---M--D----REKYDRVLEACSLKKDLEILSFGDQTVIGERGINLS 743 (1300)
Q Consensus 681 --------~~ayv~Q~~~l~~~Ti~eNI~fg~~---~--~----~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LS 743 (1300)
.++|++|+|.++..|+.||+.|+.. . . .++.+++++.+++.+++. +..+..+.+||
T Consensus 93 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS 165 (267)
T PRK14235 93 LDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPGTGLS 165 (267)
T ss_pred cchHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCC
Confidence 2689999999998899999987531 1 1 233455666666644322 23356678999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEec
Q 000755 744 GGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAG 822 (1300)
Q Consensus 744 GGQkqRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g 822 (1300)
||||||++||||++.+|+++||||||++||+.+...+.+ ++..+.+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 166 gGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g 244 (267)
T PRK14235 166 GGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEE-LIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVG 244 (267)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHH-HHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999888764 56655557899999999999865 9999999999999999
Q ss_pred ChHHHHhc
Q 000755 823 KYNDILNS 830 (1300)
Q Consensus 823 ~~~~l~~~ 830 (1300)
+.+++...
T Consensus 245 ~~~~~~~~ 252 (267)
T PRK14235 245 DTEKMFTN 252 (267)
T ss_pred CHHHHHhC
Confidence 99888643
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-36 Score=327.65 Aligned_cols=191 Identities=31% Similarity=0.452 Sum_probs=159.9
Q ss_pred EEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC-----------eEEEE
Q 000755 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-----------TKAYV 685 (1300)
Q Consensus 617 I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g-----------~~ayv 685 (1300)
|+++|++++|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~ 77 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMV 77 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEE
Confidence 468999999962 4799999999999999999999999999999999999999999999977 27999
Q ss_pred ecCCcCCC-CCHHHHHhcCCC---CCHH----HHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHHHHHc
Q 000755 686 AQSPWIQS-GNIEDNILFGKP---MDRE----KYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALY 757 (1300)
Q Consensus 686 ~Q~~~l~~-~Ti~eNI~fg~~---~~~~----~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLARAly 757 (1300)
+|++.++. .|++||+.++.. ...+ +..++++..++.+. ......+||||||||++||||++
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qr~~laral~ 146 (213)
T cd03301 78 FQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHL-----------LDRKPKQLSGGQRQRVALGRAIV 146 (213)
T ss_pred ecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHH-----------HhCChhhCCHHHHHHHHHHHHHh
Confidence 99999875 699999987632 2222 33344454444432 34556789999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEecCCCcccc-CCEEEEEeCCeEEEec
Q 000755 758 QDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL--RSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAG 822 (1300)
Q Consensus 758 ~~~~illLDep~saLD~~t~~~i~~~~~~~~l--~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g 822 (1300)
.+|++++|||||++||+++...+.+ .+..+. .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 147 ~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 147 REPKVFLMDEPLSNLDAKLRVQMRA-ELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999999888875 454443 37899999999998775 9999999999998765
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=333.46 Aligned_cols=196 Identities=30% Similarity=0.383 Sum_probs=166.9
Q ss_pred ceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC--------eEEEEe
Q 000755 615 TAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--------TKAYVA 686 (1300)
Q Consensus 615 ~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g--------~~ayv~ 686 (1300)
..|+++|++++|+ ++++|+|+||+|++|++++|+|+||||||||+++|+|.++|++|+|.++| .++|++
T Consensus 11 ~~l~i~~l~~~~~---~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~ 87 (257)
T PRK11247 11 TPLLLNAVSKRYG---ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMF 87 (257)
T ss_pred CcEEEEEEEEEEC---CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEe
Confidence 3599999999996 35799999999999999999999999999999999999999999999877 379999
Q ss_pred cCCcCCC-CCHHHHHhcCCCC-CHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCEEE
Q 000755 687 QSPWIQS-GNIEDNILFGKPM-DREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYL 764 (1300)
Q Consensus 687 Q~~~l~~-~Ti~eNI~fg~~~-~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLARAly~~~~ill 764 (1300)
|++.++. .|++||+.++... .+++..++++..++... ......+||||||||++||||++.+|+++|
T Consensus 88 q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGqkqrl~laraL~~~p~lll 156 (257)
T PRK11247 88 QDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADR-----------ANEWPAALSGGQKQRVALARALIHRPGLLL 156 (257)
T ss_pred cCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhH-----------hcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9998876 6999999986421 23455566666655432 345567899999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChH
Q 000755 765 FDDPFSAVDAHTGSHLFKEVLLGLL--RSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYN 825 (1300)
Q Consensus 765 LDep~saLD~~t~~~i~~~~~~~~l--~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 825 (1300)
|||||++||+.+...+.+ .+..+. .++|+|++||+++++.. ||+|++|++|++++.|+.+
T Consensus 157 LDEPt~~LD~~~~~~l~~-~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 157 LDEPLGALDALTRIEMQD-LIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EeCCCCCCCHHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 999999999999888865 454442 37899999999998764 9999999999999888754
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=377.85 Aligned_cols=94 Identities=12% Similarity=0.187 Sum_probs=84.8
Q ss_pred cccCCCCCChhHHHHHHHHHHHccC--CCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhccCEEEE
Q 000755 1185 VTENGENWSMGQRQLVCLGRVLLKK--SKVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVIDSDMVLL 1261 (1300)
Q Consensus 1185 v~e~G~~LSgGqrQrl~LARall~~--~~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~~D~v~v 1261 (1300)
++.....|||||-||+-||+.|-.+ -=++||||||.||-+.....+.++|++.. .|.|||+|-|+.+++..||+|+-
T Consensus 1381 L~R~~~TLSGGE~QRirLa~~lgs~L~gvlYVLDEPSiGLHp~D~~~Li~~L~~Lrd~GNTvivVEHd~~~i~~AD~iid 1460 (1809)
T PRK00635 1381 LGQEQDTLSDGEHYRLHLAKKISSNLTDIIYLLEDPLSGLHPQDAPTLLQLIKELVTNNNTVIATDRSGSLAEHADHLIH 1460 (1809)
T ss_pred ccCCCCCCcchHHHHHHHHHHhcCCCceeEEEeCCCCcCCChhHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEE
Confidence 4567789999999999999999775 45779999999999999999999999876 48999999999999999999999
Q ss_pred E------eCCEEEEecChhhHHh
Q 000755 1262 L------SHGIIEEYDSPTKLLE 1278 (1300)
Q Consensus 1262 l------~~G~i~e~g~~~~l~~ 1278 (1300)
| ..|+|+.+|+|+++..
T Consensus 1461 iGPgAG~~GG~iv~~G~~~~l~~ 1483 (1809)
T PRK00635 1461 LGPGSGPQGGYLLSTSALKQSQP 1483 (1809)
T ss_pred eCCCccCCCCEEEecCCHHHHhh
Confidence 9 4689999999999975
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=350.61 Aligned_cols=203 Identities=28% Similarity=0.408 Sum_probs=170.9
Q ss_pred ceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe-----------EE
Q 000755 615 TAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KA 683 (1300)
Q Consensus 615 ~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-----------~a 683 (1300)
..++++|++++|+ +.++|+|+||+|++||+++|+|||||||||||++|+|+.+|++|+|.++|. ++
T Consensus 18 ~~l~l~~v~~~~~---~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig 94 (377)
T PRK11607 18 PLLEIRNLTKSFD---GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPIN 94 (377)
T ss_pred ceEEEEeEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 4699999999996 246999999999999999999999999999999999999999999999884 69
Q ss_pred EEecCCcCCC-CCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHHHH
Q 000755 684 YVAQSPWIQS-GNIEDNILFGKP---MDR----EKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARA 755 (1300)
Q Consensus 684 yv~Q~~~l~~-~Ti~eNI~fg~~---~~~----~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLARA 755 (1300)
||+|++-+|. .|+.|||.|+.. .+. ++..++++..++... ......+|||||||||+||||
T Consensus 95 ~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~-----------~~~~~~~LSgGq~QRVaLARA 163 (377)
T PRK11607 95 MMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEF-----------AKRKPHQLSGGQRQRVALARS 163 (377)
T ss_pred EEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHHHHHHHHH
Confidence 9999999986 599999998743 222 234455555555432 234556899999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCCCccc-cCCEEEEEeCCeEEEecChHHHHhcC
Q 000755 756 LYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-RSKTVIYVTHQVEFLP-AADLILVMKDGKITQAGKYNDILNSG 831 (1300)
Q Consensus 756 ly~~~~illLDep~saLD~~t~~~i~~~~~~~~l-~~~TvIlvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 831 (1300)
|+.+|+++|||||||+||+.++..+.+.+..-.. .+.|+|+|||+.+.+. .||+|++|++|++++.|+++++....
T Consensus 164 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p 241 (377)
T PRK11607 164 LAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHP 241 (377)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCC
Confidence 9999999999999999999999888654332222 3789999999999865 59999999999999999999987653
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=327.64 Aligned_cols=194 Identities=19% Similarity=0.325 Sum_probs=160.9
Q ss_pred EEEEeEEEEecCCCC-CCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC------------eEE
Q 000755 617 IEIVDGNFAWDISSN-NPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG------------TKA 683 (1300)
Q Consensus 617 I~i~~~~fs~~~~~~-~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g------------~~a 683 (1300)
++++|++++|+.... .++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++| .++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~ 81 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEE
Confidence 678999999963211 2699999999999999999999999999999999999999999999987 369
Q ss_pred EEecCCcCCC-CCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHHHH
Q 000755 684 YVAQSPWIQS-GNIEDNILFGKP---MD----REKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARA 755 (1300)
Q Consensus 684 yv~Q~~~l~~-~Ti~eNI~fg~~---~~----~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLARA 755 (1300)
|++|++.++. .|++||+.+... .+ .++..++++..++.+ .......+||||||||++||||
T Consensus 82 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~lara 150 (218)
T cd03266 82 FVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEE-----------LLDRRVGGFSTGMRQKVAIARA 150 (218)
T ss_pred EecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-----------HHhhhhhhcCHHHHHHHHHHHH
Confidence 9999998887 499999976422 12 233444555555433 3345677899999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHHhh-cCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEec
Q 000755 756 LYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LRSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAG 822 (1300)
Q Consensus 756 ly~~~~illLDep~saLD~~t~~~i~~~~~~~~-l~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g 822 (1300)
++.+|+++||||||++||+.+.+.+.+ .+..+ .+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 151 l~~~p~illlDEPt~~LD~~~~~~l~~-~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 151 LVHDPPVLLLDEPTTGLDVMATRALRE-FIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HhcCCCEEEEcCCCcCCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 999999999999999999999888865 45444 347899999999998765 9999999999998654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=339.26 Aligned_cols=203 Identities=26% Similarity=0.440 Sum_probs=168.8
Q ss_pred eEEEEeEEEEecCCC--CCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe------------
Q 000755 616 AIEIVDGNFAWDISS--NNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------ 681 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~------------ 681 (1300)
.|+++|++++|+... .+++|+|+||+|++||+++|+|+||||||||+++|+|.++|++|+|.++|.
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 478999999996321 247999999999999999999999999999999999999999999998773
Q ss_pred -----EEEEecCC--cCCCCCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHH
Q 000755 682 -----KAYVAQSP--WIQSGNIEDNILFGKP---MDR----EKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQK 747 (1300)
Q Consensus 682 -----~ayv~Q~~--~l~~~Ti~eNI~fg~~---~~~----~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQk 747 (1300)
++|++|+| .++..|+.|||.|+.. .+. ++.+++++.+++..+ .......+||||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~----------~~~~~~~~LSgGq~ 151 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSED----------LISKSPFELSGGQM 151 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChh----------HhhCCcccCCHHHH
Confidence 58999998 5677899999987532 222 233445555555322 12455678999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCCCccc-cCCEEEEEeCCeEEEecChH
Q 000755 748 QRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-RSKTVIYVTHQVEFLP-AADLILVMKDGKITQAGKYN 825 (1300)
Q Consensus 748 qRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l-~~~TvIlvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~ 825 (1300)
||++||||+..+|+++||||||++||+.+...+.+ ++..+. ++.|+|++||+++.+. .||+|++|++|++++.|+.+
T Consensus 152 qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~-~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (287)
T PRK13641 152 RRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQ-LFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPK 230 (287)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999888765 555543 4789999999999876 49999999999999999998
Q ss_pred HHHh
Q 000755 826 DILN 829 (1300)
Q Consensus 826 ~l~~ 829 (1300)
++..
T Consensus 231 ~~~~ 234 (287)
T PRK13641 231 EIFS 234 (287)
T ss_pred HHhc
Confidence 8764
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=338.83 Aligned_cols=201 Identities=25% Similarity=0.458 Sum_probs=171.6
Q ss_pred eEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe--------------
Q 000755 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 681 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-------------- 681 (1300)
.|+++|++|+|+. ++++|+|+||+|++||+++|+|+||||||||+++|+|.++|++|+|.++|.
T Consensus 5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 5899999999952 357999999999999999999999999999999999999999999999872
Q ss_pred -EEEEecCC--cCCCCCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHH
Q 000755 682 -KAYVAQSP--WIQSGNIEDNILFGKP---MD----REKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQ 751 (1300)
Q Consensus 682 -~ayv~Q~~--~l~~~Ti~eNI~fg~~---~~----~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRia 751 (1300)
++|++|+| .+++.|++||+.++.. +. .++.+++++.+++... ......+||||||||++
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LS~G~~qrl~ 151 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHL-----------KDKPTHCLSFGQKKRVA 151 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhh-----------hhCCcccCCHHHHHHHH
Confidence 58999998 5678999999987532 22 2345556666666432 34567899999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcC--CcEEEEEecCCCccc-cCCEEEEEeCCeEEEecChHHHH
Q 000755 752 IARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLR--SKTVIYVTHQVEFLP-AADLILVMKDGKITQAGKYNDIL 828 (1300)
Q Consensus 752 LARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~--~~TvIlvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~ 828 (1300)
|||||+.+|+++||||||++||+.+...+.+ ++..+.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.
T Consensus 152 laraL~~~p~lLilDEPt~gLD~~~~~~l~~-~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 230 (283)
T PRK13636 152 IAGVLVMEPKVLVLDEPTAGLDPMGVSEIMK-LLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF 230 (283)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHH-HHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999888865 4554433 789999999999987 59999999999999999999886
Q ss_pred hc
Q 000755 829 NS 830 (1300)
Q Consensus 829 ~~ 830 (1300)
..
T Consensus 231 ~~ 232 (283)
T PRK13636 231 AE 232 (283)
T ss_pred cC
Confidence 53
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=334.34 Aligned_cols=204 Identities=25% Similarity=0.414 Sum_probs=170.3
Q ss_pred eEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhcccc--C---CccEEEEcCe---------
Q 000755 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVP--K---ISGTLKLCGT--------- 681 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~--~---~~G~i~~~g~--------- 681 (1300)
.++++|+++.|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|.++ | ++|+|.++|.
T Consensus 12 ~l~i~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 12 VYQINGMNLWYG---QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred eEEEeeEEEEEC---CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 589999999996 2479999999999999999999999999999999999987 3 6899988762
Q ss_pred ------EEEEecCCcCCCCCHHHHHhcCCCC----CHH----HHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHH
Q 000755 682 ------KAYVAQSPWIQSGNIEDNILFGKPM----DRE----KYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQK 747 (1300)
Q Consensus 682 ------~ayv~Q~~~l~~~Ti~eNI~fg~~~----~~~----~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQk 747 (1300)
++|++|++.++..|++||+.|+... +++ +..++++..++.+.+. ...+..+.+||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~LS~Gq~ 161 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK-------DRLHTQALSLSGGQQ 161 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hhhhCCcccCCHHHH
Confidence 6899999999989999999876421 222 2333444444433221 234567789999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHH
Q 000755 748 QRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYND 826 (1300)
Q Consensus 748 qRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 826 (1300)
||++||||++++|+++||||||++||+++...+. +++..+.+++|+|+|||+++.+.. ||+|++|++|++++.|+.++
T Consensus 162 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 240 (259)
T PRK14274 162 QRLCIARALATNPDVLLMDEPTSALDPVSTRKIE-ELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNK 240 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999988775 466665567899999999998765 99999999999999999999
Q ss_pred HHhc
Q 000755 827 ILNS 830 (1300)
Q Consensus 827 l~~~ 830 (1300)
+...
T Consensus 241 ~~~~ 244 (259)
T PRK14274 241 MFSN 244 (259)
T ss_pred HhhC
Confidence 8654
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=341.89 Aligned_cols=201 Identities=25% Similarity=0.421 Sum_probs=168.8
Q ss_pred ceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC------------eE
Q 000755 615 TAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG------------TK 682 (1300)
Q Consensus 615 ~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g------------~~ 682 (1300)
..++++|++++|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .+
T Consensus 6 ~~i~i~~l~k~~~---~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~i 82 (306)
T PRK13537 6 APIDFRNVEKRYG---DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRV 82 (306)
T ss_pred ceEEEEeEEEEEC---CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcE
Confidence 3699999999996 35799999999999999999999999999999999999999999999987 37
Q ss_pred EEEecCCcCCC-CCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHHH
Q 000755 683 AYVAQSPWIQS-GNIEDNILFGKP---MDR----EKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIAR 754 (1300)
Q Consensus 683 ayv~Q~~~l~~-~Ti~eNI~fg~~---~~~----~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLAR 754 (1300)
|||||++.++. .|++||+.|... .+. ++.+++++.+++... ......+||||||||++|||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~la~ 151 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENK-----------ADAKVGELSGGMKRRLTLAR 151 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchH-----------hcCchhhCCHHHHHHHHHHH
Confidence 99999998874 799999985321 122 233344554444322 23344589999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHHHhc
Q 000755 755 ALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-RSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDILNS 830 (1300)
Q Consensus 755 Aly~~~~illLDep~saLD~~t~~~i~~~~~~~~l-~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 830 (1300)
||.++|++++|||||++||+.++..+++ .+..+. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~~~~l~~-~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMWE-RLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHHHHHHHH-HHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999998875 455543 47999999999999876 999999999999999999998654
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=365.46 Aligned_cols=211 Identities=18% Similarity=0.199 Sum_probs=183.1
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccE
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLS 1133 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~ 1133 (1300)
.|+++|++++|+.. .+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+..++++.++
T Consensus 3 ~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~ 80 (490)
T PRK10938 3 SLQISQGTFRLSDT--KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVS 80 (490)
T ss_pred eEEEEeEEEEcCCe--eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhc
Confidence 48999999999753 4999999999999999999999999999999999999999999999998887777777788899
Q ss_pred EEcCCCCC--C-------cccHHHhcCCCCCCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHH
Q 000755 1134 IIPQDPTM--F-------EGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGR 1204 (1300)
Q Consensus 1134 ~vpQ~~~l--f-------~gTvr~Nl~~~~~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LAR 1204 (1300)
++||++.+ + ..|+++|+... ...++++.++++.+++.+.... ....||||||||++|||
T Consensus 81 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~la~ 148 (490)
T PRK10938 81 DEWQRNNTDMLSPGEDDTGRTTAEIIQDE-VKDPARCEQLAQQFGITALLDR-----------RFKYLSTGETRKTLLCQ 148 (490)
T ss_pred eeccCcchhhcccchhhccccHHHhcccc-hhHHHHHHHHHHHcCCHhhhhC-----------CcccCCHHHHHHHHHHH
Confidence 99998753 2 34889887542 1224567788888888654333 23568999999999999
Q ss_pred HHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhcC-CcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHHh
Q 000755 1205 VLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS-DCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLE 1278 (1300)
Q Consensus 1205 all~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~~-~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~~ 1278 (1300)
||+.+|++|||||||++||+.+.+.+.+.|++..+ +.|||+|||+++.+.+ ||+|++|++|+++..|+++++.+
T Consensus 149 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 224 (490)
T PRK10938 149 ALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQ 224 (490)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999988643 6899999999999988 99999999999999999998875
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=323.44 Aligned_cols=194 Identities=26% Similarity=0.363 Sum_probs=167.5
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEE
Q 000755 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSI 1134 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~ 1134 (1300)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.... ...+++++|
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~~ 78 (204)
T PRK13538 2 LEARNLACERDE--RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLLY 78 (204)
T ss_pred eEEEEEEEEECC--EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheEE
Confidence 789999999975 35999999999999999999999999999999999999999999999999987654 456778999
Q ss_pred EcCCCCCCc-ccHHHhcCCCC----CCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccC
Q 000755 1135 IPQDPTMFE-GTVRNNLDPLE----EYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKK 1209 (1300)
Q Consensus 1135 vpQ~~~lf~-gTvr~Nl~~~~----~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~ 1209 (1300)
++|++.++. .|+++|+.... ...++++.++++.+++.+...+ ....||||||||++||||++++
T Consensus 79 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~qrl~la~al~~~ 147 (204)
T PRK13538 79 LGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDV-----------PVRQLSAGQQRRVALARLWLTR 147 (204)
T ss_pred eCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhC-----------ChhhcCHHHHHHHHHHHHHhcC
Confidence 999998876 49999985421 1344567889999998654332 2357999999999999999999
Q ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhc-cCEEEEE
Q 000755 1210 SKVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVID-SDMVLLL 1262 (1300)
Q Consensus 1210 ~~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~-~D~v~vl 1262 (1300)
|++|+|||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. .+|++++
T Consensus 148 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 148 APLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 99999999999999999999999998864 46899999999999977 4677776
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-36 Score=338.76 Aligned_cols=198 Identities=32% Similarity=0.427 Sum_probs=165.1
Q ss_pred EEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC-----------------
Q 000755 618 EIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG----------------- 680 (1300)
Q Consensus 618 ~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g----------------- 680 (1300)
.++|++++|. +.++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 26 ~~~~~~~~~~---~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTG---QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcC---CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 3456666664 35689999999999999999999999999999999999999999999876
Q ss_pred eEEEEecCCcCC-CCCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHH
Q 000755 681 TKAYVAQSPWIQ-SGNIEDNILFGKP---MD----REKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQI 752 (1300)
Q Consensus 681 ~~ayv~Q~~~l~-~~Ti~eNI~fg~~---~~----~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaL 752 (1300)
.++|++|++.++ +.|++||+.++.. .+ ++++.++++.+++.+.+. ....+||||||||++|
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~Gq~qrv~l 171 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEH-----------KYPDELSGGMQQRVGL 171 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-----------CCcccCCHHHHHHHHH
Confidence 379999999988 5699999987532 11 234556666666654443 3445899999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHHHh
Q 000755 753 ARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL--RSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDILN 829 (1300)
Q Consensus 753 ARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l--~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 829 (1300)
|||++.+|+++||||||++||+.+.+.+.+ ++..+. .++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 172 Aral~~~p~illLDEPt~~LD~~~~~~l~~-~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 250 (269)
T cd03294 172 ARALAVDPDILLMDEAFSALDPLIRREMQD-ELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILT 250 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999999999888875 454442 37999999999998764 99999999999999999999875
Q ss_pred c
Q 000755 830 S 830 (1300)
Q Consensus 830 ~ 830 (1300)
.
T Consensus 251 ~ 251 (269)
T cd03294 251 N 251 (269)
T ss_pred C
Confidence 4
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=333.36 Aligned_cols=204 Identities=26% Similarity=0.424 Sum_probs=169.7
Q ss_pred eEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccc--cC---CccEEEEcC----------
Q 000755 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEV--PK---ISGTLKLCG---------- 680 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~--~~---~~G~i~~~g---------- 680 (1300)
.++++|++++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|.. +| ++|+|.++|
T Consensus 5 ~l~~~~l~~~~~---~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYN---KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEEC---CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 589999999996 257999999999999999999999999999999999985 36 589999876
Q ss_pred -----eEEEEecCCcCCCCCHHHHHhcCCC---C-CH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHH
Q 000755 681 -----TKAYVAQSPWIQSGNIEDNILFGKP---M-DR----EKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQK 747 (1300)
Q Consensus 681 -----~~ayv~Q~~~l~~~Ti~eNI~fg~~---~-~~----~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQk 747 (1300)
.++|++|++.+++.|++||+.++.. . +. ++..++++.+++...+. +..+....+||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 154 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK-------DRLHDSALGLSGGQQ 154 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHH-------HHHhcCcccCCHHHH
Confidence 2689999999999999999987531 1 11 22334455555433222 234667789999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHH
Q 000755 748 QRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYND 826 (1300)
Q Consensus 748 qRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 826 (1300)
||++||||++.+|+++||||||++||+.+...+++ .+....+++|+|++||+++.+.. ||+|++|++|++++.|+.++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 233 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEE-TLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQ 233 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHH-HHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999988875 55555557899999999998764 99999999999999999999
Q ss_pred HHhc
Q 000755 827 ILNS 830 (1300)
Q Consensus 827 l~~~ 830 (1300)
+.+.
T Consensus 234 ~~~~ 237 (252)
T PRK14239 234 MFMN 237 (252)
T ss_pred HHhC
Confidence 8754
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=333.31 Aligned_cols=204 Identities=26% Similarity=0.420 Sum_probs=170.8
Q ss_pred eEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhcc---ccC--CccEEEEcC----------
Q 000755 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGE---VPK--ISGTLKLCG---------- 680 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~---~~~--~~G~i~~~g---------- 680 (1300)
.++++|+++.|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|. ++| ++|+|.++|
T Consensus 3 ~l~~~~~~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYG---DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEEC---CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 589999999996 25699999999999999999999999999999999996 454 589998876
Q ss_pred -----eEEEEecCCcCCCCCHHHHHhcCCC----CC----HHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHH
Q 000755 681 -----TKAYVAQSPWIQSGNIEDNILFGKP----MD----REKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQK 747 (1300)
Q Consensus 681 -----~~ayv~Q~~~l~~~Ti~eNI~fg~~----~~----~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQk 747 (1300)
.++|++|++.++..|+.||+.++.. .+ +++.+++++.+++.++++ +..++.+.+||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 152 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK-------DKLKESAFALSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchh-------hhhhCCcccCCHHHH
Confidence 2699999999998999999987532 11 223455566665543332 234567789999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHH
Q 000755 748 QRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYND 826 (1300)
Q Consensus 748 qRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 826 (1300)
||++||||++.+|+++||||||++||+.+...+.+ .+..+.+++|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~ 231 (250)
T PRK14245 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEE-LIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKK 231 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999888865 55555567999999999998754 99999999999999999999
Q ss_pred HHhc
Q 000755 827 ILNS 830 (1300)
Q Consensus 827 l~~~ 830 (1300)
+.+.
T Consensus 232 ~~~~ 235 (250)
T PRK14245 232 IFTN 235 (250)
T ss_pred HhcC
Confidence 8754
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=315.62 Aligned_cols=166 Identities=32% Similarity=0.605 Sum_probs=150.9
Q ss_pred EEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe------------EEE
Q 000755 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------KAY 684 (1300)
Q Consensus 617 I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~------------~ay 684 (1300)
|+++|++++|+.. ..++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|. ++|
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEE
Confidence 4689999999632 247999999999999999999999999999999999999999999999873 699
Q ss_pred EecCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCEEE
Q 000755 685 VAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYL 764 (1300)
Q Consensus 685 v~Q~~~l~~~Ti~eNI~fg~~~~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLARAly~~~~ill 764 (1300)
++|++++++.|++||| ..+||||||||++||||++++|+++|
T Consensus 80 ~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~p~~ll 121 (178)
T cd03247 80 LNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAPIVL 121 (178)
T ss_pred EccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999998 46899999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCccccCCEEEEEeCCeEEEec
Q 000755 765 FDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAG 822 (1300)
Q Consensus 765 LDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~~d~i~~l~~G~i~~~g 822 (1300)
|||||++||+++.+.+++ .+..+.+++|+|++||++++++.||++++|++|++++.|
T Consensus 122 lDEP~~~LD~~~~~~l~~-~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 122 LDEPTVGLDPITERQLLS-LIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EECCcccCCHHHHHHHHH-HHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999888875 455555689999999999999889999999999998754
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=338.11 Aligned_cols=203 Identities=25% Similarity=0.446 Sum_probs=167.4
Q ss_pred eEEEEeEEEEecCCC--CCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe------------
Q 000755 616 AIEIVDGNFAWDISS--NNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------ 681 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~------------ 681 (1300)
.++++|++++|+... ..++|+|+||+|++|++++|+|+||||||||+++|+|.++|++|+|.++|.
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 378999999996321 146999999999999999999999999999999999999999999998772
Q ss_pred -----EEEEecCC--cCCCCCHHHHHhcCCC---CCHHH----HHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHH
Q 000755 682 -----KAYVAQSP--WIQSGNIEDNILFGKP---MDREK----YDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQK 747 (1300)
Q Consensus 682 -----~ayv~Q~~--~l~~~Ti~eNI~fg~~---~~~~~----~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQk 747 (1300)
++|++|+| .+++.|++|||.|+.. .+.++ .+++++..++.. ........+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~ 151 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISE----------SLFEKNPFELSGGQM 151 (280)
T ss_pred HHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCCcccCCHHHH
Confidence 68999998 5778899999987532 22222 233344444421 123456778999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChH
Q 000755 748 QRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-RSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYN 825 (1300)
Q Consensus 748 qRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l-~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 825 (1300)
||++||||++.+|+++||||||++||+.+.+.+.+ .+..+. .++|+|++||+++.+.. ||++++|++|++++.|+.+
T Consensus 152 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 230 (280)
T PRK13649 152 RRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMT-LFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPK 230 (280)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999888865 444443 47899999999998865 9999999999999999998
Q ss_pred HHHh
Q 000755 826 DILN 829 (1300)
Q Consensus 826 ~l~~ 829 (1300)
++..
T Consensus 231 ~~~~ 234 (280)
T PRK13649 231 DIFQ 234 (280)
T ss_pred HHhc
Confidence 8765
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=334.34 Aligned_cols=205 Identities=26% Similarity=0.378 Sum_probs=174.0
Q ss_pred ceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhcccc-----CCccEEEEcC---------
Q 000755 615 TAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVP-----KISGTLKLCG--------- 680 (1300)
Q Consensus 615 ~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~-----~~~G~i~~~g--------- 680 (1300)
..|+++|++++|+ ++++|+|+||++++||+++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 19 ~~l~~~nl~~~~~---~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 95 (267)
T PRK14237 19 IALSTKDLHVYYG---KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95 (267)
T ss_pred eEEEEeeEEEEEC---CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCC
Confidence 4699999999995 3679999999999999999999999999999999999996 5899998876
Q ss_pred ------eEEEEecCCcCCCCCHHHHHhcCCC----CC----HHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHH
Q 000755 681 ------TKAYVAQSPWIQSGNIEDNILFGKP----MD----REKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQ 746 (1300)
Q Consensus 681 ------~~ayv~Q~~~l~~~Ti~eNI~fg~~----~~----~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQ 746 (1300)
.++|++|++.++..|++|||.++.. .+ +++..++++.+++.+++. +..+..+.+|||||
T Consensus 96 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~G~ 168 (267)
T PRK14237 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVK-------DDLHKSALTLSGGQ 168 (267)
T ss_pred hHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhh-------hhhcCCcccCCHHH
Confidence 2699999999998999999988632 12 233455566666654332 23567788999999
Q ss_pred HHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChH
Q 000755 747 KQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYN 825 (1300)
Q Consensus 747 kqRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 825 (1300)
|||++||||++++|+++||||||++||+.+...+.+ ++..+.++.|+|++||+++.+.. ||+|++|++|++++.|+.+
T Consensus 169 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 247 (267)
T PRK14237 169 QQRLCIARAIAVKPDILLMDEPASALDPISTMQLEE-TMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTR 247 (267)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999888865 55555567899999999998764 9999999999999999999
Q ss_pred HHHhc
Q 000755 826 DILNS 830 (1300)
Q Consensus 826 ~l~~~ 830 (1300)
++...
T Consensus 248 ~~~~~ 252 (267)
T PRK14237 248 NIFTN 252 (267)
T ss_pred HHhcC
Confidence 98653
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=329.73 Aligned_cols=199 Identities=30% Similarity=0.460 Sum_probs=167.0
Q ss_pred EEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC---------------e
Q 000755 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG---------------T 681 (1300)
Q Consensus 617 I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g---------------~ 681 (1300)
++++|++++|+ ++++|+|+||++++||+++|+|+||||||||+++|+|.++|++|+|.++| .
T Consensus 2 l~~~~l~~~~~---~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFG---PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEEC---CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 67899999996 25799999999999999999999999999999999999999999999887 2
Q ss_pred EEEEecCCcCCC-CCHHHHHhcCCC----CCHH----HHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHH
Q 000755 682 KAYVAQSPWIQS-GNIEDNILFGKP----MDRE----KYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQI 752 (1300)
Q Consensus 682 ~ayv~Q~~~l~~-~Ti~eNI~fg~~----~~~~----~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaL 752 (1300)
++|++|++.++. .|++||+.++.. .+.+ +..++++..++. .....+...||||||||++|
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LS~G~~qrv~l 147 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLA-----------ERAHHYPSELSGGQQQRVAI 147 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCh-----------HHHhcChhhcCHHHHHHHHH
Confidence 699999998875 699999988631 2222 233344443333 33345667899999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHHHhc
Q 000755 753 ARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-RSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDILNS 830 (1300)
Q Consensus 753 ARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l-~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 830 (1300)
|||++.+|++++|||||++||+++...+.+ ++..+. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 148 ARALAVKPKLMLFDEPTSALDPELRHEVLK-VMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 999999999999999999999999888865 555443 47999999999999865 999999999999999999988653
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=364.66 Aligned_cols=220 Identities=24% Similarity=0.396 Sum_probs=182.4
Q ss_pred eEEEEeeeeeeCCC--CCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CcceEEECCeecCCCCHH
Q 000755 1054 EVDILNLQVRYAPH--LPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGEIVIDGINISSIGLH 1126 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~--~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p-----~~G~I~idg~di~~i~~~ 1126 (1300)
.++++|++++|+.. ..++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++...+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 58999999999632 23699999999999999999999999999999999999987 799999999999876654
Q ss_pred H---Hh-cccEEEcCCCC--CCc-ccHHHhcCC----CCCCC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCC
Q 000755 1127 D---LR-SRLSIIPQDPT--MFE-GTVRNNLDP----LEEYK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGEN 1191 (1300)
Q Consensus 1127 ~---lr-~~i~~vpQ~~~--lf~-gTvr~Nl~~----~~~~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~ 1191 (1300)
+ .| ++++|+||++. ++. .|+++|+.. ....+ .+++.++++.+++.+.... ......+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~--------~~~~~~~ 156 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKR--------LTDYPHQ 156 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHH--------HhhCCcc
Confidence 3 33 57999999985 444 488888742 11122 2456778888888542110 1223457
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc--CCcEEEEEeCChhhhhc-cCEEEEEeCCEEE
Q 000755 1192 WSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF--SDCTVITIAHRITSVID-SDMVLLLSHGIIE 1268 (1300)
Q Consensus 1192 LSgGqrQrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~ 1268 (1300)
||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++.. .+.|||+|||+++.+.. ||||++|++|+++
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~ 236 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV 236 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE
Confidence 89999999999999999999999999999999999999999998864 36899999999999987 9999999999999
Q ss_pred EecChhhHHhcCC
Q 000755 1269 EYDSPTKLLENKS 1281 (1300)
Q Consensus 1269 e~g~~~~l~~~~~ 1281 (1300)
+.|+++++++.+.
T Consensus 237 ~~g~~~~~~~~~~ 249 (529)
T PRK15134 237 EQNRAATLFSAPT 249 (529)
T ss_pred EeCCHHHHhhCCC
Confidence 9999999976543
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=335.38 Aligned_cols=205 Identities=24% Similarity=0.348 Sum_probs=169.9
Q ss_pred ceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhcccc-----CCccEEEEcC---------
Q 000755 615 TAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVP-----KISGTLKLCG--------- 680 (1300)
Q Consensus 615 ~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~-----~~~G~i~~~g--------- 680 (1300)
..++++|++++|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 20 ~~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 96 (268)
T PRK14248 20 HILEVKDLSIYYG---EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNIN 96 (268)
T ss_pred ceEEEEEEEEEeC---CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccccc
Confidence 3689999999996 3579999999999999999999999999999999999864 6899998875
Q ss_pred ------eEEEEecCCcCCCCCHHHHHhcCCCC----C----HHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHH
Q 000755 681 ------TKAYVAQSPWIQSGNIEDNILFGKPM----D----REKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQ 746 (1300)
Q Consensus 681 ------~~ayv~Q~~~l~~~Ti~eNI~fg~~~----~----~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQ 746 (1300)
.++|++|++.++..|+.||+.++... . +++..++++.+++..++ ....+....+|||||
T Consensus 97 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgGq 169 (268)
T PRK14248 97 VVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEV-------KDRLHSSALSLSGGQ 169 (268)
T ss_pred HHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcch-------HHHHhcCcccCCHHH
Confidence 26899999999989999999876321 1 12233444444443222 123456778999999
Q ss_pred HHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChH
Q 000755 747 KQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYN 825 (1300)
Q Consensus 747 kqRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 825 (1300)
|||++||||++++|+++||||||++||+.+...+.+ ++..+.+++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 170 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 248 (268)
T PRK14248 170 QQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEE-LITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTE 248 (268)
T ss_pred HHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHH-HHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999888864 55555557899999999998764 9999999999999999998
Q ss_pred HHHhc
Q 000755 826 DILNS 830 (1300)
Q Consensus 826 ~l~~~ 830 (1300)
++...
T Consensus 249 ~~~~~ 253 (268)
T PRK14248 249 QIFTS 253 (268)
T ss_pred HHHhC
Confidence 88654
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=324.97 Aligned_cols=190 Identities=24% Similarity=0.385 Sum_probs=160.7
Q ss_pred EEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC------------eEEE
Q 000755 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG------------TKAY 684 (1300)
Q Consensus 617 I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g------------~~ay 684 (1300)
|+++|++|.|+ +.++++|+||++++| +++|+|+||||||||+++|+|+++|++|+|.++| .++|
T Consensus 1 i~~~~~~~~~~---~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYG---KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGY 76 (211)
T ss_pred CEEEEEEEEEC---CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEE
Confidence 47899999995 247999999999999 9999999999999999999999999999999987 2699
Q ss_pred EecCCcCCCC-CHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHHHHH
Q 000755 685 VAQSPWIQSG-NIEDNILFGKP---MD----REKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARAL 756 (1300)
Q Consensus 685 v~Q~~~l~~~-Ti~eNI~fg~~---~~----~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLARAl 756 (1300)
++|++.++.. |++||+.+... .+ +++.+++++.+++.+.. .....+||||||||++||||+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la~al 145 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRA-----------KKKIGSLSGGMRRRVGIAQAL 145 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHH-----------hCchhhCCHHHHHHHHHHHHH
Confidence 9999998875 99999986421 12 23445566666665433 234468999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEec
Q 000755 757 YQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAG 822 (1300)
Q Consensus 757 y~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g 822 (1300)
+++|+++||||||++||+.+.+.+++ .+....+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 146 VGDPSILIVDEPTAGLDPEERIRFRN-LLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999988865 55555557999999999999865 9999999999998764
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=338.72 Aligned_cols=204 Identities=25% Similarity=0.388 Sum_probs=166.3
Q ss_pred ceEEEEeEEEEecCCC--CCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC------------
Q 000755 615 TAIEIVDGNFAWDISS--NNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG------------ 680 (1300)
Q Consensus 615 ~~I~i~~~~fs~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g------------ 680 (1300)
..|+++|++++|+... ..++|+|+||+|++||+++|+|+||||||||+++|+|.++|++|+|.++|
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 4689999999996321 13699999999999999999999999999999999999999999998876
Q ss_pred ------eEEEEecCCc--CCCCCHHHHHhcCCC---CCHH----HHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHH
Q 000755 681 ------TKAYVAQSPW--IQSGNIEDNILFGKP---MDRE----KYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGG 745 (1300)
Q Consensus 681 ------~~ayv~Q~~~--l~~~Ti~eNI~fg~~---~~~~----~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGG 745 (1300)
.++|++|+|. ++..|++|||.|+.. ...+ +..+.++..++.. ...+....+||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~----------~~~~~~~~~LS~G 154 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPE----------DYVKRSPFELSGG 154 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hHhcCChhhCCHH
Confidence 2689999984 567899999998642 2222 2223333333311 1234567889999
Q ss_pred HHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEecCCCcccc-CCEEEEEeCCeEEEec
Q 000755 746 QKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL--RSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAG 822 (1300)
Q Consensus 746 QkqRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l--~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g 822 (1300)
||||++||||++.+|+++||||||++||+.+.+.+++ .+..+. .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 155 q~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g 233 (289)
T PRK13645 155 QKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFIN-LFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIG 233 (289)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999888765 455443 37899999999998764 9999999999999999
Q ss_pred ChHHHHh
Q 000755 823 KYNDILN 829 (1300)
Q Consensus 823 ~~~~l~~ 829 (1300)
+++++..
T Consensus 234 ~~~~~~~ 240 (289)
T PRK13645 234 SPFEIFS 240 (289)
T ss_pred CHHHHhc
Confidence 9888764
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=333.06 Aligned_cols=204 Identities=28% Similarity=0.430 Sum_probs=170.4
Q ss_pred eEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhcccc-----CCccEEEEcCe---------
Q 000755 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVP-----KISGTLKLCGT--------- 681 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~-----~~~G~i~~~g~--------- 681 (1300)
.++++|++|+|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.
T Consensus 4 ~l~~~~l~~~~~---~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYG---NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEEC---CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 489999999996 2579999999999999999999999999999999999997 47999988762
Q ss_pred ------EEEEecCCcCCCCCHHHHHhcCCCC----CH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHH
Q 000755 682 ------KAYVAQSPWIQSGNIEDNILFGKPM----DR----EKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQK 747 (1300)
Q Consensus 682 ------~ayv~Q~~~l~~~Ti~eNI~fg~~~----~~----~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQk 747 (1300)
++|++|++.++..|++||+.++... +. +++.++++.+++..+. ....+..+.+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET-------KDNLDRNAQAFSGGQQ 153 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch-------HHHhccChhhCCHHHH
Confidence 6899999999999999999876321 11 2344555555553211 1223567789999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHH
Q 000755 748 QRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYND 826 (1300)
Q Consensus 748 qRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 826 (1300)
||++||||++++|+++||||||++||+.+.+.+.+ .+..+.+++|+|+|||+++.+.. ||+|++|++|++++.|+.++
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 232 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEE-TLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEE 232 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHH-HHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999888765 55555567899999999999765 99999999999999999998
Q ss_pred HHhc
Q 000755 827 ILNS 830 (1300)
Q Consensus 827 l~~~ 830 (1300)
+...
T Consensus 233 ~~~~ 236 (251)
T PRK14251 233 MFIA 236 (251)
T ss_pred HHhC
Confidence 8654
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=303.12 Aligned_cols=217 Identities=28% Similarity=0.439 Sum_probs=189.4
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCC----------
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSI---------- 1123 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i---------- 1123 (1300)
.++++|+.++|+.. .|||+||++.+.|+.|.|+|.+||||||++++|.=+..|+.|+|.++|..|...
T Consensus 6 ~l~v~dlHK~~G~~--eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~a 83 (256)
T COG4598 6 ALEVEDLHKRYGEH--EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPA 83 (256)
T ss_pred ceehhHHHhhcccc--hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeC
Confidence 68999999999876 499999999999999999999999999999999999999999999999887532
Q ss_pred ---CHHHHhcccEEEcCCCCCCcc-cHHHhcC--CC---CCCCHH---HHHHHHHHcCCcHHHHhhcCCCccccccCCCC
Q 000755 1124 ---GLHDLRSRLSIIPQDPTMFEG-TVRNNLD--PL---EEYKDE---EIWEALDKCQLGDEVRNKEGKLDSRVTENGEN 1191 (1300)
Q Consensus 1124 ---~~~~lr~~i~~vpQ~~~lf~g-Tvr~Nl~--~~---~~~~d~---~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~ 1191 (1300)
.++.+|+++++|+|...|++- |+.+|+- |. +...++ .....|.++|+.+.....| ..
T Consensus 84 d~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP-----------~~ 152 (256)
T COG4598 84 DKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYP-----------AH 152 (256)
T ss_pred CHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCc-----------cc
Confidence 134578999999999999865 9999973 32 222222 3345688898877655544 46
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhc-cCEEEEEeCCEEEE
Q 000755 1192 WSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGIIEE 1269 (1300)
Q Consensus 1192 LSgGqrQrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e 1269 (1300)
|||||+||++|||||..+|+++++|||||+|||+-..++.+.+++.. .++|+++|||.+....+ +..|+.|++|.|-|
T Consensus 153 LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE 232 (256)
T COG4598 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEE 232 (256)
T ss_pred cCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecc
Confidence 79999999999999999999999999999999999999999999876 47999999999999999 89999999999999
Q ss_pred ecChhhHHhcCCCh
Q 000755 1270 YDSPTKLLENKSSS 1283 (1300)
Q Consensus 1270 ~g~~~~l~~~~~~~ 1283 (1300)
+|+|++++.++.|.
T Consensus 233 ~G~P~qvf~nP~S~ 246 (256)
T COG4598 233 EGPPEQVFGNPQSP 246 (256)
T ss_pred cCChHHHhcCCCCH
Confidence 99999999998774
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=340.16 Aligned_cols=201 Identities=25% Similarity=0.424 Sum_probs=167.4
Q ss_pred ceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC------------eE
Q 000755 615 TAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG------------TK 682 (1300)
Q Consensus 615 ~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g------------~~ 682 (1300)
..|+++|++++|+ +.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++| .+
T Consensus 3 ~~i~~~~l~~~~~---~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i 79 (303)
T TIGR01288 3 VAIDLVGVSKSYG---DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAI 79 (303)
T ss_pred cEEEEEeEEEEeC---CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcE
Confidence 3589999999996 35699999999999999999999999999999999999999999999987 36
Q ss_pred EEEecCCcCC-CCCHHHHHhcC-C--CCCHH----HHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHHH
Q 000755 683 AYVAQSPWIQ-SGNIEDNILFG-K--PMDRE----KYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIAR 754 (1300)
Q Consensus 683 ayv~Q~~~l~-~~Ti~eNI~fg-~--~~~~~----~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLAR 754 (1300)
+|++|++.++ ..|++||+.+. . ..+.+ +.+++++.+++.+ .......+||||||||++|||
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-----------~~~~~~~~LSgG~~qrv~la~ 148 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLES-----------KADVRVALLSGGMKRRLTLAR 148 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChh-----------HhcCchhhCCHHHHHHHHHHH
Confidence 9999999887 47999999752 2 12222 2333444444432 223455689999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhh-cCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHHHhc
Q 000755 755 ALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LRSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDILNS 830 (1300)
Q Consensus 755 Aly~~~~illLDep~saLD~~t~~~i~~~~~~~~-l~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 830 (1300)
|++.+|+++||||||++||+.+...+.+ .+..+ .+++|+|++||+++.+.. ||+|++|++|+++..|+++++...
T Consensus 149 al~~~p~lllLDEPt~gLD~~~~~~l~~-~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 149 ALINDPQLLILDEPTTGLDPHARHLIWE-RLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHH-HHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 9999999999999999999999988875 44443 358899999999999875 999999999999999999988643
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=331.72 Aligned_cols=202 Identities=31% Similarity=0.444 Sum_probs=166.3
Q ss_pred EEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe-------------EE
Q 000755 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------KA 683 (1300)
Q Consensus 617 I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-------------~a 683 (1300)
++++|++++|+.. .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|. ++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4689999999631 56999999999999999999999999999999999999999999998872 58
Q ss_pred EEecCCcCCC-CCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHHHH
Q 000755 684 YVAQSPWIQS-GNIEDNILFGKP---MDR----EKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARA 755 (1300)
Q Consensus 684 yv~Q~~~l~~-~Ti~eNI~fg~~---~~~----~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLARA 755 (1300)
|++|+|.++. .|++||+.++.. .+. ++..++++..++.. .....+.+.+||||||||++||||
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---------~~~~~~~~~~LS~G~~qrv~lara 149 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP---------AEFADRYPHELSGGQQQRVGVARA 149 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc---------HHHHhcChhhCCHHHHHHHHHHHH
Confidence 9999998885 699999987632 221 23334444444332 013356678999999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHHHhc
Q 000755 756 LYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL--RSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDILNS 830 (1300)
Q Consensus 756 ly~~~~illLDep~saLD~~t~~~i~~~~~~~~l--~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 830 (1300)
++++|++++|||||++||+.+...+.+ ++.... .++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 150 l~~~p~llllDEPt~~LD~~~~~~l~~-~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 150 LAADPPLLLMDEPFGALDPITRDQLQE-EFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHH-HHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 999999999999999999999887765 444443 37999999999998654 999999999999999998887643
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=333.25 Aligned_cols=206 Identities=24% Similarity=0.383 Sum_probs=172.0
Q ss_pred ceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhcccc-----CCccEEEEcC---------
Q 000755 615 TAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVP-----KISGTLKLCG--------- 680 (1300)
Q Consensus 615 ~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~-----~~~G~i~~~g--------- 680 (1300)
..++++|++++|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|.++ |++|+|.++|
T Consensus 12 ~~l~i~nl~~~~~---~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 12 IIISLQNVTISYG---TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred ceEEEEeEEEEEC---CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 4699999999996 2569999999999999999999999999999999999987 6899999876
Q ss_pred ------eEEEEecCCcCCCCCHHHHHhcCCCC---C---HHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHH
Q 000755 681 ------TKAYVAQSPWIQSGNIEDNILFGKPM---D---REKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQ 748 (1300)
Q Consensus 681 ------~~ayv~Q~~~l~~~Ti~eNI~fg~~~---~---~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkq 748 (1300)
.++|++|++.++..|++||+.++... . +++..++++.+++...+ .........+|||||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDEC-------KDKLNESGYSLSGGQQQ 161 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchh-------hhhhCCCcccCCHHHHH
Confidence 26999999999888999999986532 1 23344455555443222 23346677899999999
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCcccc-CCEEEEEeC-----------C
Q 000755 749 RIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPA-ADLILVMKD-----------G 816 (1300)
Q Consensus 749 RiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~-~d~i~~l~~-----------G 816 (1300)
|++||||++++|+++||||||++||+.+...+.+ .+..+.+++|+|++||+++.+.. ||++++|++ |
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~-~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g 240 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEE-TMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVG 240 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccc
Confidence 9999999999999999999999999999888865 55555567899999999998765 999999996 6
Q ss_pred eEEEecChHHHHhcC
Q 000755 817 KITQAGKYNDILNSG 831 (1300)
Q Consensus 817 ~i~~~g~~~~l~~~~ 831 (1300)
++++.|+.+++....
T Consensus 241 ~~~~~~~~~~~~~~~ 255 (269)
T PRK14259 241 YLVEFNETKKIFNSP 255 (269)
T ss_pred eEEEeCCHHHHHhCc
Confidence 789999999987643
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=326.22 Aligned_cols=191 Identities=28% Similarity=0.408 Sum_probs=158.4
Q ss_pred EEEEeEEEEecCCC-CCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC---------------
Q 000755 617 IEIVDGNFAWDISS-NNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--------------- 680 (1300)
Q Consensus 617 I~i~~~~fs~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g--------------- 680 (1300)
++++|++++|+... ..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68899999996321 24699999999999999999999999999999999999999999999875
Q ss_pred --eEEEEecCCcCCC-CCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHH
Q 000755 681 --TKAYVAQSPWIQS-GNIEDNILFGKP---MDR----EKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRI 750 (1300)
Q Consensus 681 --~~ayv~Q~~~l~~-~Ti~eNI~fg~~---~~~----~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRi 750 (1300)
.++|++|++.++. .|++||+.++.. .+. ++..++++.+++.+ ........||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEH-----------RINHRPSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-----------hhhCChhhCCHHHHHHH
Confidence 2799999998874 699999987421 222 23344444444432 23445578999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEecCCCccccCCEEEEEeCCeEE
Q 000755 751 QIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL--RSKTVIYVTHQVEFLPAADLILVMKDGKIT 819 (1300)
Q Consensus 751 aLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l--~~~TvIlvtH~~~~l~~~d~i~~l~~G~i~ 819 (1300)
+||||++.+|+++||||||++||+++...+.+ ++..+. .++|+|++||+++++..+|+|++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFD-LMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999888865 455443 378999999999998889999999999985
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=336.48 Aligned_cols=203 Identities=29% Similarity=0.431 Sum_probs=171.7
Q ss_pred ceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCc---cEEEEcCe----------
Q 000755 615 TAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKIS---GTLKLCGT---------- 681 (1300)
Q Consensus 615 ~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~---G~i~~~g~---------- 681 (1300)
..++++|++|+|+.. ..++++|+||+|++||+++|+|+||||||||+++|+|+++|++ |+|.++|.
T Consensus 4 ~~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 4 NIVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred ceEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 358999999999632 3469999999999999999999999999999999999999998 89998772
Q ss_pred ---EEEEecCCc--CCCCCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHH
Q 000755 682 ---KAYVAQSPW--IQSGNIEDNILFGKP---MDR----EKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQR 749 (1300)
Q Consensus 682 ---~ayv~Q~~~--l~~~Ti~eNI~fg~~---~~~----~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqR 749 (1300)
++|++|+|+ +++.|+.|||.|+.. .+. ++..++++.+++.+.. .....+||||||||
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~LS~G~~qr 151 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYI-----------DSEPANLSGGQKQR 151 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHh-----------cCCcccCCHHHHHH
Confidence 699999984 568899999998632 223 3355566666665433 34457899999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHH
Q 000755 750 IQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL--RSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDI 827 (1300)
Q Consensus 750 iaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l--~~~TvIlvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l 827 (1300)
++||||++++|+++||||||++||+.+...+.+ ++..+. .++|+|++||+++.+..||+|++|++|++++.|+++++
T Consensus 152 v~laral~~~P~llllDEPt~gLD~~~~~~l~~-~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 230 (282)
T PRK13640 152 VAIAGILAVEPKIIILDESTSMLDPAGKEQILK-LIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEI 230 (282)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999988875 455443 27899999999999888999999999999999999887
Q ss_pred Hhc
Q 000755 828 LNS 830 (1300)
Q Consensus 828 ~~~ 830 (1300)
...
T Consensus 231 ~~~ 233 (282)
T PRK13640 231 FSK 233 (282)
T ss_pred hcC
Confidence 653
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=324.41 Aligned_cols=191 Identities=26% Similarity=0.418 Sum_probs=159.4
Q ss_pred EEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC---------eEEEEec
Q 000755 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG---------TKAYVAQ 687 (1300)
Q Consensus 617 I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g---------~~ayv~Q 687 (1300)
++++|++++|+ ++++++|+||++++|++++|+|+||||||||+++|+|.++|++|+|.++| .++|++|
T Consensus 1 l~~~~l~~~~~---~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q 77 (210)
T cd03269 1 LEVENVTKRFG---RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPE 77 (210)
T ss_pred CEEEEEEEEEC---CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEecc
Confidence 46899999995 35799999999999999999999999999999999999999999999987 3799999
Q ss_pred CCcCCC-CCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHHHHHccC
Q 000755 688 SPWIQS-GNIEDNILFGKP---MD----REKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQD 759 (1300)
Q Consensus 688 ~~~l~~-~Ti~eNI~fg~~---~~----~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLARAly~~ 759 (1300)
++.++. .|++||+.++.. .. +++..+.++..++.. .......+||||||||++||||++.+
T Consensus 78 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~la~al~~~ 146 (210)
T cd03269 78 ERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSE-----------YANKRVEELSKGNQQKVQFIAAVIHD 146 (210)
T ss_pred CCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChH-----------HHhCcHhhCCHHHHHHHHHHHHHhcC
Confidence 998876 599999987532 11 223344444444433 33456678999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHhh-cCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEec
Q 000755 760 ADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LRSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAG 822 (1300)
Q Consensus 760 ~~illLDep~saLD~~t~~~i~~~~~~~~-l~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g 822 (1300)
|+++||||||++||+.+.+.+.+. +... .+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 147 p~~lllDEP~~~LD~~~~~~~~~~-l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 147 PELLILDEPFSGLDPVNVELLKDV-IRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHH-HHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 999999999999999999888764 4443 347899999999998865 9999999999998654
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=334.26 Aligned_cols=202 Identities=31% Similarity=0.499 Sum_probs=169.8
Q ss_pred eEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC-------------eE
Q 000755 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-------------TK 682 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g-------------~~ 682 (1300)
.++++|++++|+. .++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| .+
T Consensus 7 ~l~~~nl~~~~~~-~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPN-SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCC-CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 5899999999962 245799999999999999999999999999999999999999999999877 26
Q ss_pred EEEecCC--cCCCCCHHHHHhcCCC---CCHH----HHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHH
Q 000755 683 AYVAQSP--WIQSGNIEDNILFGKP---MDRE----KYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIA 753 (1300)
Q Consensus 683 ayv~Q~~--~l~~~Ti~eNI~fg~~---~~~~----~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLA 753 (1300)
+|++|+| .+++.|++|||.++.. ++.+ +..++++..++.+.+ .....+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~la 154 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYL-----------DKEPQNLSGGQKQRVAIA 154 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHh-----------hCCcccCCHHHHHHHHHH
Confidence 9999998 4567899999998632 3333 234455555554433 445579999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc-C-CcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHhc
Q 000755 754 RALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-R-SKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNS 830 (1300)
Q Consensus 754 RAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l-~-~~TvIlvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 830 (1300)
||++.+|+++||||||++||+.+.+.+++ .+..+. + ++|+|++||+++.+..||+|++|++|++++.|+.+++...
T Consensus 155 ral~~~p~lllLDEP~~gLD~~~~~~l~~-~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 155 SVLALNPEIIIFDESTSMLDPKGKREIKK-IMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999888875 454443 3 4899999999998888999999999999999998887653
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=333.16 Aligned_cols=202 Identities=26% Similarity=0.454 Sum_probs=168.9
Q ss_pred ceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC--------------
Q 000755 615 TAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-------------- 680 (1300)
Q Consensus 615 ~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g-------------- 680 (1300)
+.++++|+++.|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 4 ~~l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 4 NKLNVIDLHKRYG---EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred ccEEEeeeEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 4689999999996 25799999999999999999999999999999999999999999998876
Q ss_pred ------------eEEEEecCCcCCC-CCHHHHHhcCC----CCCH----HHHHHHHHHhcchHHHhhccCCCcccccCCC
Q 000755 681 ------------TKAYVAQSPWIQS-GNIEDNILFGK----PMDR----EKYDRVLEACSLKKDLEILSFGDQTVIGERG 739 (1300)
Q Consensus 681 ------------~~ayv~Q~~~l~~-~Ti~eNI~fg~----~~~~----~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g 739 (1300)
.++|++|++.++. .|++||+.++. ..+. ++..++++..++...+ .+...
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~~ 150 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERA----------QGKYP 150 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhh----------hhCCc
Confidence 2699999999886 59999998642 1222 2333344444433221 14567
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCCCcccc-CCEEEEEeCCe
Q 000755 740 INLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-RSKTVIYVTHQVEFLPA-ADLILVMKDGK 817 (1300)
Q Consensus 740 ~~LSGGQkqRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l-~~~TvIlvtH~~~~l~~-~d~i~~l~~G~ 817 (1300)
.+||||||||++||||++++|+++||||||++||+.+.+.+.+ ++..+. +++|+|+|||+++.+.. ||+|++|++|+
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~ 229 (257)
T PRK10619 151 VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLR-IMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGK 229 (257)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 7899999999999999999999999999999999999988875 555443 48999999999999886 99999999999
Q ss_pred EEEecChHHHHhc
Q 000755 818 ITQAGKYNDILNS 830 (1300)
Q Consensus 818 i~~~g~~~~l~~~ 830 (1300)
+++.|+++++...
T Consensus 230 i~~~~~~~~~~~~ 242 (257)
T PRK10619 230 IEEEGAPEQLFGN 242 (257)
T ss_pred EEEeCCHHHhhhC
Confidence 9999999988653
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=329.61 Aligned_cols=199 Identities=25% Similarity=0.394 Sum_probs=168.0
Q ss_pred eEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe--------------
Q 000755 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 681 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-------------- 681 (1300)
-|+++|+++.|+ ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 2 ~i~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T TIGR03411 2 ILYLEGLSVSFD---GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAG 78 (242)
T ss_pred eEEEEeeEEEcC---CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcC
Confidence 378999999996 247999999999999999999999999999999999999999999998872
Q ss_pred EEEEecCCcCCCC-CHHHHHhcCCCCC---------------HHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHH
Q 000755 682 KAYVAQSPWIQSG-NIEDNILFGKPMD---------------REKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGG 745 (1300)
Q Consensus 682 ~ayv~Q~~~l~~~-Ti~eNI~fg~~~~---------------~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGG 745 (1300)
++|++|++.++.+ |++||+.++...+ +++.++.++.. |..........+||||
T Consensus 79 i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G 147 (242)
T TIGR03411 79 IGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI-----------GLADEADRLAGLLSHG 147 (242)
T ss_pred eeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHc-----------CCchhhcCChhhCCHH
Confidence 6899999998875 9999998863211 11222333333 2333445677899999
Q ss_pred HHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecCh
Q 000755 746 QKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKY 824 (1300)
Q Consensus 746 QkqRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 824 (1300)
||||++||||++.+|++++|||||++||+.+...+.+ ++..+.+++|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 148 e~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~-~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~ 226 (242)
T TIGR03411 148 QKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAE-LLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSL 226 (242)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHH-HHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCH
Confidence 9999999999999999999999999999999988865 55555567899999999999875 999999999999999999
Q ss_pred HHHHh
Q 000755 825 NDILN 829 (1300)
Q Consensus 825 ~~l~~ 829 (1300)
+++..
T Consensus 227 ~~~~~ 231 (242)
T TIGR03411 227 DQVQA 231 (242)
T ss_pred HHHhc
Confidence 88764
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=372.89 Aligned_cols=224 Identities=23% Similarity=0.332 Sum_probs=182.8
Q ss_pred ceEEEEeeeeeeCCC--CCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecC---------
Q 000755 1053 GEVDILNLQVRYAPH--LPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINIS--------- 1121 (1300)
Q Consensus 1053 g~i~~~~v~~~y~~~--~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~--------- 1121 (1300)
..|+++|++++|+.. ..++|+||||+|++||++||||+||||||||+++|+|+++|++|+|.++|+++.
T Consensus 11 ~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~ 90 (623)
T PRK10261 11 DVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIEL 90 (623)
T ss_pred ceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccccc
Confidence 369999999999632 236999999999999999999999999999999999999999999999997552
Q ss_pred -CCCHH---HHh-cccEEEcCCC--CCCcc-cHHHhcCCC----CCCC----HHHHHHHHHHcCCcHHHHhhcCCCcccc
Q 000755 1122 -SIGLH---DLR-SRLSIIPQDP--TMFEG-TVRNNLDPL----EEYK----DEEIWEALDKCQLGDEVRNKEGKLDSRV 1185 (1300)
Q Consensus 1122 -~i~~~---~lr-~~i~~vpQ~~--~lf~g-Tvr~Nl~~~----~~~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v 1185 (1300)
+.+.. .+| ++|+||+|+| .++.. ||++|+... ...+ .+++.++|+.+++.+.- ...
T Consensus 91 ~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~--------~~~ 162 (623)
T PRK10261 91 SEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQ--------TIL 162 (623)
T ss_pred ccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChh--------hHH
Confidence 12222 233 4799999998 56664 999998531 1122 23566778888874310 012
Q ss_pred ccCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-C-CcEEEEEeCChhhhhc-cCEEEEE
Q 000755 1186 TENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF-S-DCTVITIAHRITSVID-SDMVLLL 1262 (1300)
Q Consensus 1186 ~e~G~~LSgGqrQrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~-~~Tvi~iaHrl~~i~~-~D~v~vl 1262 (1300)
.....+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++.. + ++|||+|||+++.+.. ||||++|
T Consensus 163 ~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl 242 (623)
T PRK10261 163 SRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVM 242 (623)
T ss_pred hCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEe
Confidence 23346799999999999999999999999999999999999999999999865 3 7899999999999987 9999999
Q ss_pred eCCEEEEecChhhHHhcCCChH
Q 000755 1263 SHGIIEEYDSPTKLLENKSSSF 1284 (1300)
Q Consensus 1263 ~~G~i~e~g~~~~l~~~~~~~f 1284 (1300)
++|++++.|++++++..+...|
T Consensus 243 ~~G~i~~~g~~~~~~~~~~~~~ 264 (623)
T PRK10261 243 YQGEAVETGSVEQIFHAPQHPY 264 (623)
T ss_pred eCCeecccCCHHHhhcCCCChh
Confidence 9999999999999986544333
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=330.32 Aligned_cols=204 Identities=27% Similarity=0.420 Sum_probs=170.3
Q ss_pred eEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCC-----ccEEEEcC----------
Q 000755 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKI-----SGTLKLCG---------- 680 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~-----~G~i~~~g---------- 680 (1300)
.++++|++|+|+ ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|+ +|+|.++|
T Consensus 4 ~l~~~~l~~~~~---~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYH---KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEEC---CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 588999999996 256999999999999999999999999999999999999987 69998765
Q ss_pred -----eEEEEecCCcCCCCCHHHHHhcCCCC----CH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHH
Q 000755 681 -----TKAYVAQSPWIQSGNIEDNILFGKPM----DR----EKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQK 747 (1300)
Q Consensus 681 -----~~ayv~Q~~~l~~~Ti~eNI~fg~~~----~~----~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQk 747 (1300)
.++|++|++.++..|++||+.++... .. ++.+++++..++.+.+ ....+..+.+||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEV-------KDNLHKSGLALSGGQQ 153 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhh-------hhHhhCCcccCCHHHH
Confidence 27999999999989999999986421 11 2233333334443222 2335677889999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHH
Q 000755 748 QRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYND 826 (1300)
Q Consensus 748 qRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 826 (1300)
||++||||++.+|+++||||||++||+.+...+.+ ++..+.+++|+|++||+++.+.. ||+|++|++|++++.|+.++
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 232 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEE-LMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGE 232 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHH
Confidence 99999999999999999999999999999888764 55555567999999999999876 89999999999999999988
Q ss_pred HHhc
Q 000755 827 ILNS 830 (1300)
Q Consensus 827 l~~~ 830 (1300)
+...
T Consensus 233 ~~~~ 236 (251)
T PRK14249 233 IFSR 236 (251)
T ss_pred HHhC
Confidence 8654
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=332.99 Aligned_cols=205 Identities=24% Similarity=0.421 Sum_probs=170.9
Q ss_pred ceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccC-----CccEEEEcC---------
Q 000755 615 TAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK-----ISGTLKLCG--------- 680 (1300)
Q Consensus 615 ~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~-----~~G~i~~~g--------- 680 (1300)
..++++|+++.|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|.++| ++|+|.++|
T Consensus 11 ~~l~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 87 (258)
T PRK14268 11 PQIKVENLNLWYG---EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87 (258)
T ss_pred eeEEEeeeEEEeC---CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccch
Confidence 3699999999995 35799999999999999999999999999999999999975 799998866
Q ss_pred ------eEEEEecCCcCCCCCHHHHHhcCCC---CCHH----HHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHH
Q 000755 681 ------TKAYVAQSPWIQSGNIEDNILFGKP---MDRE----KYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQK 747 (1300)
Q Consensus 681 ------~~ayv~Q~~~l~~~Ti~eNI~fg~~---~~~~----~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQk 747 (1300)
.++|++|++.++..|++||+.|+.. .+.+ +.+++++.+++..++ .........+||||||
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG~~ 160 (258)
T PRK14268 88 VVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDET-------SDRLKSPALSLSGGQQ 160 (258)
T ss_pred HHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcch-------hhhhcCChhhCCHHHH
Confidence 2689999999988999999987632 2222 234455555543222 1234566789999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHH
Q 000755 748 QRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYND 826 (1300)
Q Consensus 748 qRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 826 (1300)
||++||||++.+|+++||||||++||+.+...+.+ ++..+.+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 161 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 239 (258)
T PRK14268 161 QRLCIARTLAVKPKIILFDEPTSALDPISTARIED-LIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQ 239 (258)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHH-HHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999888864 55555567999999999998865 99999999999999999998
Q ss_pred HHhc
Q 000755 827 ILNS 830 (1300)
Q Consensus 827 l~~~ 830 (1300)
+...
T Consensus 240 ~~~~ 243 (258)
T PRK14268 240 IFHN 243 (258)
T ss_pred HhcC
Confidence 8653
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=331.27 Aligned_cols=198 Identities=25% Similarity=0.436 Sum_probs=167.5
Q ss_pred EEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe-------------EE
Q 000755 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------KA 683 (1300)
Q Consensus 617 I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-------------~a 683 (1300)
++++|++++|+ ++++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|. ++
T Consensus 3 l~~~~l~~~~~---~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 3 LRTENLTVGYG---TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEeEEEEEC---CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 78999999996 357999999999999999999999999999999999999999999998872 69
Q ss_pred EEecCCcCCCC-CHHHHHhcCCC-----C------CHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHH
Q 000755 684 YVAQSPWIQSG-NIEDNILFGKP-----M------DREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQ 751 (1300)
Q Consensus 684 yv~Q~~~l~~~-Ti~eNI~fg~~-----~------~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRia 751 (1300)
|++|++.++.+ |+.||+.++.. + +.++.+++++.+++.+. .......||||||||++
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~ 148 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHL-----------ADRRLTDLSGGQRQRAF 148 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHH-----------HcCCcccCCHHHHHHHH
Confidence 99999988765 99999998631 1 12234455555555432 23456789999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHHHh
Q 000755 752 IARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-RSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDILN 829 (1300)
Q Consensus 752 LARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l-~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 829 (1300)
||||+..+|+++||||||++||+.+.+.+.+ .+..+. +++|+|++||+++.+.. ||+|++|++|+++..|+++++..
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~-~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMR-LMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 9999999999999999999999999888865 444433 47899999999998765 99999999999999999988754
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=329.96 Aligned_cols=204 Identities=27% Similarity=0.416 Sum_probs=170.3
Q ss_pred eEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccC-----CccEEEEcC----------
Q 000755 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK-----ISGTLKLCG---------- 680 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~-----~~G~i~~~g---------- 680 (1300)
.++++|++++|+ ++++++|+||+|++||+++|+|+||||||||+++|+|.+++ ++|+|.++|
T Consensus 3 ~l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14240 3 KISVKDLDLFYG---DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79 (250)
T ss_pred eEEEEEEEEEEC---CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 588999999996 24799999999999999999999999999999999998763 699999876
Q ss_pred -----eEEEEecCCcCCCCCHHHHHhcCCCC----C----HHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHH
Q 000755 681 -----TKAYVAQSPWIQSGNIEDNILFGKPM----D----REKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQK 747 (1300)
Q Consensus 681 -----~~ayv~Q~~~l~~~Ti~eNI~fg~~~----~----~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQk 747 (1300)
.++|++|++.++..|+.||+.++... + +++..++++.+++.+++. ...+..+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~ 152 (250)
T PRK14240 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK-------DRLKKSALGLSGGQQ 152 (250)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhH-------HHHhcCCCCCCHHHH
Confidence 26999999998889999999986321 1 223344455555543332 234567789999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHH
Q 000755 748 QRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYND 826 (1300)
Q Consensus 748 qRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 826 (1300)
||++||||++.+|+++||||||++||+.+...+.+ ++..+.+++|+|++||+++.+.. ||+|++|++|++++.|+.++
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (250)
T PRK14240 153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIEE-LIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVD 231 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999888864 56655567899999999998765 99999999999999999988
Q ss_pred HHhc
Q 000755 827 ILNS 830 (1300)
Q Consensus 827 l~~~ 830 (1300)
+...
T Consensus 232 ~~~~ 235 (250)
T PRK14240 232 LFTN 235 (250)
T ss_pred HHhC
Confidence 7643
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=348.72 Aligned_cols=200 Identities=26% Similarity=0.467 Sum_probs=171.5
Q ss_pred eEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC-------------eE
Q 000755 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-------------TK 682 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g-------------~~ 682 (1300)
.++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .+
T Consensus 3 ~L~~~nls~~y~---~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFG---DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEEC---CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 488999999996 35799999999999999999999999999999999999999999999987 26
Q ss_pred EEEecCCcC-CCCCHHHHHhcCCC-----C------CHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHH
Q 000755 683 AYVAQSPWI-QSGNIEDNILFGKP-----M------DREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRI 750 (1300)
Q Consensus 683 ayv~Q~~~l-~~~Ti~eNI~fg~~-----~------~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRi 750 (1300)
+||+|++.+ ++.|++||+.++.. + +.++.+++++..++.+.. .....+||||||||+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~-----------~~~~~~LSgGerQRv 148 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFA-----------DRPVTSLSGGERQRV 148 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHH
Confidence 999999987 67899999998752 1 233455666666664332 345678999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHHH
Q 000755 751 QIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-RSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDIL 828 (1300)
Q Consensus 751 aLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l-~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 828 (1300)
+|||||+++|+++||||||++||+.+...+.+ .+..+. .++|+|++||+++.+.. ||++++|++|++++.|++++++
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~-lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLE-LVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVL 227 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHH-HHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999999999999888865 455443 47899999999999864 9999999999999999999987
Q ss_pred hc
Q 000755 829 NS 830 (1300)
Q Consensus 829 ~~ 830 (1300)
..
T Consensus 228 ~~ 229 (402)
T PRK09536 228 TA 229 (402)
T ss_pred Cc
Confidence 53
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=330.20 Aligned_cols=204 Identities=27% Similarity=0.414 Sum_probs=172.7
Q ss_pred eEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccC-----CccEEEEcC----------
Q 000755 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK-----ISGTLKLCG---------- 680 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~-----~~G~i~~~g---------- 680 (1300)
-++++|+++.|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|..+| ++|+|.++|
T Consensus 4 ~l~~~~l~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYG---EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEEC---CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 588999999996 25799999999999999999999999999999999999875 799999876
Q ss_pred -----eEEEEecCCcCCCCCHHHHHhcCCCC----CH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHH
Q 000755 681 -----TKAYVAQSPWIQSGNIEDNILFGKPM----DR----EKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQK 747 (1300)
Q Consensus 681 -----~~ayv~Q~~~l~~~Ti~eNI~fg~~~----~~----~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQk 747 (1300)
.++|++|++.++..|++||+.|+... +. +++.++++.+++.+++.. ..+.....||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~ 153 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKD-------DLKKSALKLSGGQQ 153 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhh-------HhhCCcccCCHHHH
Confidence 26999999999999999999976321 21 334556666666433321 23556789999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHH
Q 000755 748 QRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYND 826 (1300)
Q Consensus 748 qRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 826 (1300)
||++||||++++|+++||||||++||+.+...+.+ .+..+.+++|+|+|||+++.+.. ||+|++|++|++++.|+.++
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~-~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 232 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIED-LMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEK 232 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHH
Confidence 99999999999999999999999999999988865 56555557899999999998765 99999999999999999998
Q ss_pred HHhc
Q 000755 827 ILNS 830 (1300)
Q Consensus 827 l~~~ 830 (1300)
+...
T Consensus 233 ~~~~ 236 (251)
T PRK14270 233 IFLE 236 (251)
T ss_pred HhcC
Confidence 8654
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=322.67 Aligned_cols=195 Identities=21% Similarity=0.252 Sum_probs=167.1
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccE
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLS 1133 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~ 1133 (1300)
.++++|++++|++. ++++++||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++... ..++.++
T Consensus 11 ~l~~~~l~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i~ 85 (214)
T PRK13543 11 LLAAHALAFSRNEE--PVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFMA 85 (214)
T ss_pred eEEEeeEEEecCCc--eeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhceE
Confidence 69999999999753 599999999999999999999999999999999999999999999999988642 3456799
Q ss_pred EEcCCCCCCcc-cHHHhcCCC----CCCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHcc
Q 000755 1134 IIPQDPTMFEG-TVRNNLDPL----EEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLK 1208 (1300)
Q Consensus 1134 ~vpQ~~~lf~g-Tvr~Nl~~~----~~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~ 1208 (1300)
|+||++.++.+ |+++|+... ....++.+.++++..++.+.. +. ...+||+|||||++||||+++
T Consensus 86 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~----~~~~LS~G~~qrv~laral~~ 154 (214)
T PRK13543 86 YLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYE-------DT----LVRQLSAGQKKRLALARLWLS 154 (214)
T ss_pred EeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhc-------cC----ChhhCCHHHHHHHHHHHHHhc
Confidence 99999998876 999998532 112234556778888765432 22 335799999999999999999
Q ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhc-cCEEEEEeC
Q 000755 1209 KSKVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVID-SDMVLLLSH 1264 (1300)
Q Consensus 1209 ~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~-~D~v~vl~~ 1264 (1300)
+|++|+|||||++||+++.+.+.+.|++.. +++|+|++||+++.+.+ ||++++++.
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 155 PAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 999999999999999999999999998754 46899999999999987 999999875
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=362.45 Aligned_cols=207 Identities=22% Similarity=0.321 Sum_probs=176.7
Q ss_pred eEEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCH-HHHhccc
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGL-HDLRSRL 1132 (1300)
Q Consensus 1054 ~i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~-~~lr~~i 1132 (1300)
.|+++|++++|++ .++|+|+||++++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+. ..+|+++
T Consensus 4 ~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i 81 (501)
T PRK11288 4 YLSFDGIGKTFPG--VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGV 81 (501)
T ss_pred eEEEeeeEEEECC--EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCE
Confidence 5899999999975 359999999999999999999999999999999999999999999999999875543 3457789
Q ss_pred EEEcCCCCCCcc-cHHHhcCCCC-----C-CC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHH
Q 000755 1133 SIIPQDPTMFEG-TVRNNLDPLE-----E-YK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVC 1201 (1300)
Q Consensus 1133 ~~vpQ~~~lf~g-Tvr~Nl~~~~-----~-~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~ 1201 (1300)
+|+||++.+|.. |+++|+.... . .. ++++.++++.+++.+. ......+||||||||++
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGq~qrv~ 150 (501)
T PRK11288 82 AIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDID-----------PDTPLKYLSIGQRQMVE 150 (501)
T ss_pred EEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCC-----------cCCchhhCCHHHHHHHH
Confidence 999999988875 9999986421 1 11 2346667777776432 12234679999999999
Q ss_pred HHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecCh
Q 000755 1202 LGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSP 1273 (1300)
Q Consensus 1202 LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~ 1273 (1300)
|||||+.+|++|||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.+++
T Consensus 151 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 151 IAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence 9999999999999999999999999999999998864 36899999999999987 999999999999876654
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=362.70 Aligned_cols=208 Identities=19% Similarity=0.306 Sum_probs=175.9
Q ss_pred EEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHH-HHhcccEEE
Q 000755 1057 ILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLH-DLRSRLSII 1135 (1300)
Q Consensus 1057 ~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~-~lr~~i~~v 1135 (1300)
++|++++|++ .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.. .+|++++|+
T Consensus 1 ~~nl~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 78 (491)
T PRK10982 1 MSNISKSFPG--VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMV 78 (491)
T ss_pred CCceEEEeCC--EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 3689999965 3599999999999999999999999999999999999999999999999998765543 456789999
Q ss_pred cCCCCCCcc-cHHHhcCCCC----C--CCH----HHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHH
Q 000755 1136 PQDPTMFEG-TVRNNLDPLE----E--YKD----EEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGR 1204 (1300)
Q Consensus 1136 pQ~~~lf~g-Tvr~Nl~~~~----~--~~d----~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LAR 1204 (1300)
||++.++.. |+++|+.... . .+. +++.++++.+++.+ .......+||||||||++|||
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGq~qrv~lA~ 147 (491)
T PRK10982 79 HQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDI-----------DPRAKVATLSVSQMQMIEIAK 147 (491)
T ss_pred ecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCC-----------CccCchhhCCHHHHHHHHHHH
Confidence 999987754 9999986421 1 122 23455666665532 223345679999999999999
Q ss_pred HHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHH
Q 000755 1205 VLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLL 1277 (1300)
Q Consensus 1205 all~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~ 1277 (1300)
||+++|++|||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 148 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 222 (491)
T PRK10982 148 AFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLT 222 (491)
T ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCC
Confidence 9999999999999999999999999999998864 46899999999999987 9999999999999999988864
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=325.37 Aligned_cols=196 Identities=26% Similarity=0.401 Sum_probs=163.9
Q ss_pred eEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe-------------E
Q 000755 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------K 682 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-------------~ 682 (1300)
.|+++|++++|+ +.++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 7 ~i~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 7 LLQLQNVGYLAG---DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred eEEEeccEEeeC---CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 589999999995 357999999999999999999999999999999999999999999998872 6
Q ss_pred EEEecCCcCCCCCHHHHHhcCCC-----CCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHHHHHc
Q 000755 683 AYVAQSPWIQSGNIEDNILFGKP-----MDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALY 757 (1300)
Q Consensus 683 ayv~Q~~~l~~~Ti~eNI~fg~~-----~~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLARAly 757 (1300)
+|++|++.++..|++||+.++.. .++++..++++..++.+ +.......+||||||||++||||++
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qrv~laral~ 153 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPD----------TILTKNIAELSGGEKQRISLIRNLQ 153 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCCh----------HHhcCCcccCCHHHHHHHHHHHHHh
Confidence 99999999998999999987421 12233344444444421 2345677899999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEecCCCccccCCEEEEEe-CCeEEEecChH
Q 000755 758 QDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL--RSKTVIYVTHQVEFLPAADLILVMK-DGKITQAGKYN 825 (1300)
Q Consensus 758 ~~~~illLDep~saLD~~t~~~i~~~~~~~~l--~~~TvIlvtH~~~~l~~~d~i~~l~-~G~i~~~g~~~ 825 (1300)
++|+++||||||++||+.+.+.+.+ ++..+. .++|+|++||+++.++.||++++|+ ++..++.|+|+
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 154 FMPKVLLLDEITSALDESNKHNVNE-IIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 9999999999999999999887764 455443 3789999999999998899999995 66777778774
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=334.13 Aligned_cols=203 Identities=27% Similarity=0.428 Sum_probs=171.5
Q ss_pred eEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe-------------E
Q 000755 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------K 682 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-------------~ 682 (1300)
.++++|++++|+.....++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|. +
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 489999999997433346999999999999999999999999999999999999999999999872 6
Q ss_pred EEEecCCc--CCCCCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHH
Q 000755 683 AYVAQSPW--IQSGNIEDNILFGKP---MDR----EKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIA 753 (1300)
Q Consensus 683 ayv~Q~~~--l~~~Ti~eNI~fg~~---~~~----~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLA 753 (1300)
+|++|+|. ++..|+.|||.++.. ... ++++++++.+++.... ......||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFK-----------TREPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHh-----------hCCcccCCHHHHHHHHHH
Confidence 99999984 678899999987532 222 2345566666664332 234578999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcC--CcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHhc
Q 000755 754 RALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLR--SKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNS 830 (1300)
Q Consensus 754 RAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~--~~TvIlvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 830 (1300)
||++.+|+++||||||++||+.+...+.+ .+..+.+ +.|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~-~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMR-VIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999988875 4554433 7899999999999888999999999999999999988754
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=331.09 Aligned_cols=200 Identities=30% Similarity=0.428 Sum_probs=166.8
Q ss_pred eEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC---------------
Q 000755 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--------------- 680 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g--------------- 680 (1300)
.++++|++++|+ ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 3 ~l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (250)
T PRK11264 3 AIEVKNLVKKFH---GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGL 79 (250)
T ss_pred cEEEeceEEEEC---CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhH
Confidence 378999999996 24799999999999999999999999999999999999999999998765
Q ss_pred ------eEEEEecCCcCCC-CCHHHHHhcCC----CCCH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHH
Q 000755 681 ------TKAYVAQSPWIQS-GNIEDNILFGK----PMDR----EKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGG 745 (1300)
Q Consensus 681 ------~~ayv~Q~~~l~~-~Ti~eNI~fg~----~~~~----~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGG 745 (1300)
.++|++|++.++. .|++||+.++. ..+. ++..+.++..++. ........+||||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LS~G 148 (250)
T PRK11264 80 IRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLA-----------GKETSYPRRLSGG 148 (250)
T ss_pred HHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-----------chhhCChhhCChH
Confidence 2699999998875 79999998642 1222 2233333333332 2335567899999
Q ss_pred HHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecC
Q 000755 746 QKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-RSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGK 823 (1300)
Q Consensus 746 QkqRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l-~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 823 (1300)
||||++||||+..+|+++||||||++||+.+...+.+ ++..+. +++|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 149 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~ 227 (250)
T PRK11264 149 QQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLN-TIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGP 227 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999888875 455443 47899999999999865 99999999999999999
Q ss_pred hHHHHhc
Q 000755 824 YNDILNS 830 (1300)
Q Consensus 824 ~~~l~~~ 830 (1300)
.+++.+.
T Consensus 228 ~~~~~~~ 234 (250)
T PRK11264 228 AKALFAD 234 (250)
T ss_pred HHHHhcC
Confidence 9988654
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=303.10 Aligned_cols=192 Identities=26% Similarity=0.421 Sum_probs=170.1
Q ss_pred EEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC----------------
Q 000755 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG---------------- 680 (1300)
Q Consensus 617 I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g---------------- 680 (1300)
|+|+|++..|+.+ .++|+||||+|++||++-|+||||||||||+++|.++..|+.|+|.++|
T Consensus 2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 7899999999843 6799999999999999999999999999999999999999999999988
Q ss_pred eEEEEecCCcC-CCCCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHH
Q 000755 681 TKAYVAQSPWI-QSGNIEDNILFGKP---MD----REKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQI 752 (1300)
Q Consensus 681 ~~ayv~Q~~~l-~~~Ti~eNI~fg~~---~~----~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaL 752 (1300)
+||+|+||.-+ .+-|+.||+.|... .. +++..++++..+|.+....+| ..|||||+||++|
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP-----------~~LSGGEQQRvaI 148 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP-----------SQLSGGEQQRVAI 148 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc-----------cccCchHHHHHHH
Confidence 46999999976 56799999998654 22 356677888999998888887 5799999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhh-cCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEec
Q 000755 753 ARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LRSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAG 822 (1300)
Q Consensus 753 ARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~-l~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g 822 (1300)
|||+..+|++||-||||.+||+.++..|++ ++..+ ..|.||+++||+.+.+.. --+++.+++|+++...
T Consensus 149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~-lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMR-LFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred HHHHccCCCeEeecCCCCCCChHHHHHHHH-HHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 999999999999999999999999999985 44443 569999999999999987 5789999999998543
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=334.23 Aligned_cols=200 Identities=27% Similarity=0.362 Sum_probs=167.4
Q ss_pred eEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC---------------
Q 000755 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--------------- 680 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g--------------- 680 (1300)
.|+++|++++|+ ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 7 ~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 7 LVDMRGVSFTRG---NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred eEEEeCeEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 589999999995 35799999999999999999999999999999999999999999999876
Q ss_pred -eEEEEecCCcCCCC-CHHHHHhcCC----CCCHH----HHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHH
Q 000755 681 -TKAYVAQSPWIQSG-NIEDNILFGK----PMDRE----KYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRI 750 (1300)
Q Consensus 681 -~~ayv~Q~~~l~~~-Ti~eNI~fg~----~~~~~----~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRi 750 (1300)
.++|++|++.++.. |+.||+.++. ..+.+ +..+.++..++.. .......+||||||||+
T Consensus 84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgGq~qrv 152 (269)
T PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRG-----------AAKLMPSELSGGMARRA 152 (269)
T ss_pred hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChh-----------hhhCChhhCCHHHHHHH
Confidence 26899999998875 9999998742 12222 2333444444432 22345578999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHH
Q 000755 751 QIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL--RSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDI 827 (1300)
Q Consensus 751 aLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l--~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 827 (1300)
+||||++.+|+++||||||++||+.+.+.+.+ ++..+. .++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 231 (269)
T PRK11831 153 ALARAIALEPDLIMFDEPFVGQDPITMGVLVK-LISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQAL 231 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHH-HHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999888765 455443 27899999999998875 999999999999999999998
Q ss_pred Hhc
Q 000755 828 LNS 830 (1300)
Q Consensus 828 ~~~ 830 (1300)
.+.
T Consensus 232 ~~~ 234 (269)
T PRK11831 232 QAN 234 (269)
T ss_pred hcC
Confidence 764
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=333.17 Aligned_cols=205 Identities=24% Similarity=0.408 Sum_probs=170.4
Q ss_pred ceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhcccc-----CCccEEEEcC---------
Q 000755 615 TAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVP-----KISGTLKLCG--------- 680 (1300)
Q Consensus 615 ~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~-----~~~G~i~~~g--------- 680 (1300)
..++++|+++.|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|.++ |++|+|.++|
T Consensus 23 ~~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 99 (271)
T PRK14238 23 VVFDTQNLNLWYG---EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99 (271)
T ss_pred eEEEEeeeEEEEC---CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccccc
Confidence 3699999999996 2469999999999999999999999999999999999987 6999999876
Q ss_pred ------eEEEEecCCcCCCCCHHHHHhcCCC---C-CHHH----HHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHH
Q 000755 681 ------TKAYVAQSPWIQSGNIEDNILFGKP---M-DREK----YDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQ 746 (1300)
Q Consensus 681 ------~~ayv~Q~~~l~~~Ti~eNI~fg~~---~-~~~~----~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQ 746 (1300)
.++|++|++.++..|++|||.++.. . +++. ..++++..++..++ ....+..+.+|||||
T Consensus 100 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l-------~~~~~~~~~~LSgGe 172 (271)
T PRK14238 100 VEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDEL-------KDRLHDNAYGLSGGQ 172 (271)
T ss_pred HHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchH-------HHHHhcCcccCCHHH
Confidence 2699999999998999999987532 1 1111 12233333322222 233467788999999
Q ss_pred HHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChH
Q 000755 747 KQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYN 825 (1300)
Q Consensus 747 kqRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 825 (1300)
|||++||||++++|+++||||||++||+.+...+.+ .+..+.+++|+|++||+++++.. ||+|++|++|++++.|+++
T Consensus 173 ~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~ 251 (271)
T PRK14238 173 QQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEE-LVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTD 251 (271)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHH-HHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999988865 56655567999999999999765 9999999999999999999
Q ss_pred HHHhc
Q 000755 826 DILNS 830 (1300)
Q Consensus 826 ~l~~~ 830 (1300)
++...
T Consensus 252 ~~~~~ 256 (271)
T PRK14238 252 KIFSN 256 (271)
T ss_pred HHHcC
Confidence 98754
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=329.44 Aligned_cols=204 Identities=27% Similarity=0.399 Sum_probs=169.0
Q ss_pred eEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccC-----CccEEEEcCe---------
Q 000755 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK-----ISGTLKLCGT--------- 681 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~-----~~G~i~~~g~--------- 681 (1300)
.++++|++++|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.
T Consensus 3 ~l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFG---QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEEC---CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 488999999996 24799999999999999999999999999999999999974 7999998873
Q ss_pred ----EEEEecCCcC-CCCCHHHHHhcCCCC-----CH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHH
Q 000755 682 ----KAYVAQSPWI-QSGNIEDNILFGKPM-----DR----EKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQK 747 (1300)
Q Consensus 682 ----~ayv~Q~~~l-~~~Ti~eNI~fg~~~-----~~----~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQk 747 (1300)
++|++|++.+ ++.|++||+.++... .. ++..++++.+++.+.++ ........+||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~ 152 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK-------DRLDAPAGKLSGGQQ 152 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCCcccCCHHHH
Confidence 6899999975 468999999876321 11 23344555555533221 223556678999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCccc-cCCEEEEEeCCeEEEecChHH
Q 000755 748 QRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLP-AADLILVMKDGKITQAGKYND 826 (1300)
Q Consensus 748 qRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~ 826 (1300)
||++||||+.++|++++|||||++||+.+...+.+ ++..+.+++|+|++||+++.+. .||+|++|++|++++.|+.++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~-~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIES-LFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTRE 231 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHH
Confidence 99999999999999999999999999999988875 4555556799999999999876 599999999999999999998
Q ss_pred HHhc
Q 000755 827 ILNS 830 (1300)
Q Consensus 827 l~~~ 830 (1300)
+...
T Consensus 232 ~~~~ 235 (250)
T PRK14247 232 VFTN 235 (250)
T ss_pred HHcC
Confidence 8654
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=325.34 Aligned_cols=198 Identities=21% Similarity=0.321 Sum_probs=164.2
Q ss_pred EEEEeeeeeeCCC-----CCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEEC--Ce--ecCCCCH
Q 000755 1055 VDILNLQVRYAPH-----LPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVID--GI--NISSIGL 1125 (1300)
Q Consensus 1055 i~~~~v~~~y~~~-----~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~id--g~--di~~i~~ 1125 (1300)
|+++|++++|+.. .+++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+| |. ++..++.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 7899999999631 2469999999999999999999999999999999999999999999998 42 6665555
Q ss_pred HH---H-hcccEEEcCCCCCCcc-cHHHhcCCC---CCCC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCC
Q 000755 1126 HD---L-RSRLSIIPQDPTMFEG-TVRNNLDPL---EEYK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWS 1193 (1300)
Q Consensus 1126 ~~---l-r~~i~~vpQ~~~lf~g-Tvr~Nl~~~---~~~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LS 1193 (1300)
.. + +++++|+||++.++.. |+++|+... .... ++++.++++..++.+... ...+.+||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LS 151 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLW----------HLPPATFS 151 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh----------hCCcccCC
Confidence 43 3 4579999999988865 999998531 1121 345667788877754321 12356799
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhc-cCEEEEE
Q 000755 1194 MGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVID-SDMVLLL 1262 (1300)
Q Consensus 1194 gGqrQrl~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~-~D~v~vl 1262 (1300)
+|||||++|||||+++|++|||||||++||+.+.+.+.+.|++.. +++|||++||+++.+.. ||+|+.+
T Consensus 152 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 152 GGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 999999999999999999999999999999999999999999864 37899999999999876 9999876
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-35 Score=331.56 Aligned_cols=204 Identities=26% Similarity=0.409 Sum_probs=172.7
Q ss_pred eEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhcccc-----CCccEEEEcC----------
Q 000755 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVP-----KISGTLKLCG---------- 680 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~-----~~~G~i~~~g---------- 680 (1300)
.++++|++++|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 10 ~l~i~~v~~~~~---~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYG---SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEEC---CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 589999999996 2479999999999999999999999999999999999976 4799998876
Q ss_pred -----eEEEEecCCcCCCCCHHHHHhcCCCC---C---HHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHH
Q 000755 681 -----TKAYVAQSPWIQSGNIEDNILFGKPM---D---REKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQR 749 (1300)
Q Consensus 681 -----~~ayv~Q~~~l~~~Ti~eNI~fg~~~---~---~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqR 749 (1300)
.++|++|++.+++.|+.|||.++... . +++..++++.+++..++.. ..+..+.+||||||||
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~qr 159 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-------KLKQSGLSLSGGQQQR 159 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHH-------HhcCCcccCCHHHHHH
Confidence 26999999999888999999986431 1 2344555666666544431 2456778999999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCcccc-CCEEEEEe---------CCeEE
Q 000755 750 IQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPA-ADLILVMK---------DGKIT 819 (1300)
Q Consensus 750 iaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~-~d~i~~l~---------~G~i~ 819 (1300)
++||||++++|+++||||||++||+.+...+.+ ++..+.+++|+|++||+++.+.. ||+|++|+ +|+++
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~ 238 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEE-LMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLV 238 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEE
Confidence 999999999999999999999999999888764 56655567899999999998765 99999998 89999
Q ss_pred EecChHHHHhc
Q 000755 820 QAGKYNDILNS 830 (1300)
Q Consensus 820 ~~g~~~~l~~~ 830 (1300)
+.|+.+++...
T Consensus 239 ~~~~~~~~~~~ 249 (264)
T PRK14243 239 EFDRTEKIFNS 249 (264)
T ss_pred EeCCHHHHHhC
Confidence 99999998754
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=330.68 Aligned_cols=199 Identities=22% Similarity=0.359 Sum_probs=166.5
Q ss_pred eEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe--------------
Q 000755 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 681 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-------------- 681 (1300)
.++++|+++.|+ +.++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 5 ~l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFG---GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEEC---CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 589999999995 357999999999999999999999999999999999999999999999873
Q ss_pred EEEEecCCcCCCC-CHHHHHhcCCCC----------------C---H---HHHHHHHHHhcchHHHhhccCCCcccccCC
Q 000755 682 KAYVAQSPWIQSG-NIEDNILFGKPM----------------D---R---EKYDRVLEACSLKKDLEILSFGDQTVIGER 738 (1300)
Q Consensus 682 ~ayv~Q~~~l~~~-Ti~eNI~fg~~~----------------~---~---~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~ 738 (1300)
++|++|++.++.. |++|||.++... . . ++..+.++.. |.....+.+
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~ 150 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERV-----------GLLEHANRQ 150 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhC-----------ChhhhhhCC
Confidence 5789999998875 999999986310 0 0 1122222222 333445677
Q ss_pred CCCCCHHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc-C-CcEEEEEecCCCcccc-CCEEEEEeC
Q 000755 739 GINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-R-SKTVIYVTHQVEFLPA-ADLILVMKD 815 (1300)
Q Consensus 739 g~~LSGGQkqRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l-~-~~TvIlvtH~~~~l~~-~d~i~~l~~ 815 (1300)
..+||||||||++||||++.+|+++||||||++||+.+.+.+.+ .+..+. + ++|+|++||+++.+.. ||++++|++
T Consensus 151 ~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~-~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~ 229 (255)
T PRK11300 151 AGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDE-LIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQ 229 (255)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHH-HHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 88999999999999999999999999999999999999888865 454443 3 7899999999999865 999999999
Q ss_pred CeEEEecChHHHHh
Q 000755 816 GKITQAGKYNDILN 829 (1300)
Q Consensus 816 G~i~~~g~~~~l~~ 829 (1300)
|++++.|+.+++..
T Consensus 230 g~i~~~~~~~~~~~ 243 (255)
T PRK11300 230 GTPLANGTPEEIRN 243 (255)
T ss_pred CeEEecCCHHHHhh
Confidence 99999999888754
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=324.12 Aligned_cols=188 Identities=28% Similarity=0.421 Sum_probs=157.5
Q ss_pred EEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe---------------
Q 000755 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--------------- 681 (1300)
Q Consensus 617 I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~--------------- 681 (1300)
++++|++++|+. .+++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 1 l~~~~l~~~~~~--~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPN--GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCC--CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 468999999952 247999999999999999999999999999999999999999999998763
Q ss_pred -EEEEecCCcCCC-CCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHH
Q 000755 682 -KAYVAQSPWIQS-GNIEDNILFGKP---MD----REKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQI 752 (1300)
Q Consensus 682 -~ayv~Q~~~l~~-~Ti~eNI~fg~~---~~----~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaL 752 (1300)
++|++|++.++. .|++||+.++.. .+ +++..+.++.+++...+ .....+||||||||++|
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~l 147 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKH-----------RALPAELSGGEQQRVAI 147 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHh-----------hCChhhcCHHHHHHHHH
Confidence 699999998886 599999987632 12 23445556666665433 23446899999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhh-cCCcEEEEEecCCCcccc-CCEEEEEeCCeE
Q 000755 753 ARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LRSKTVIYVTHQVEFLPA-ADLILVMKDGKI 818 (1300)
Q Consensus 753 ARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~-l~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i 818 (1300)
|||++.+|+++||||||++||+++.+.+.+ .+..+ .+++|+|++||+++.+.. ||+|++|++|++
T Consensus 148 aral~~~p~llllDEPt~~LD~~~~~~~~~-~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 148 ARAIVNSPTILIADEPTGNLDPDTTWEIMN-LLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999888865 44444 357999999999999875 999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-35 Score=327.47 Aligned_cols=199 Identities=28% Similarity=0.416 Sum_probs=165.4
Q ss_pred eEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe--------------
Q 000755 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 681 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-------------- 681 (1300)
.++++|++++|+ ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 2 ~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T PRK11124 2 SIQLNGINCFYG---AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred EEEEEeeEEEEC---CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHH
Confidence 378999999996 257999999999999999999999999999999999999999999998763
Q ss_pred -----EEEEecCCcCCC-CCHHHHHhcCC----CCCH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHH
Q 000755 682 -----KAYVAQSPWIQS-GNIEDNILFGK----PMDR----EKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQK 747 (1300)
Q Consensus 682 -----~ayv~Q~~~l~~-~Ti~eNI~fg~----~~~~----~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQk 747 (1300)
++|++|++.++. .|+.|||.++. .... ++..+.++..++ +..+.....+||||||
T Consensus 79 ~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LS~G~~ 147 (242)
T PRK11124 79 ELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRL-----------KPYADRFPLHLSGGQQ 147 (242)
T ss_pred HHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-----------hhhhhCChhhCCHHHH
Confidence 689999998886 59999997431 1111 223333333333 3334555679999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChH
Q 000755 748 QRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-RSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYN 825 (1300)
Q Consensus 748 qRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l-~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 825 (1300)
||++||||++.+|+++||||||++||+.+...+.+ ++..+. +++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 148 qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~-~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~ 226 (242)
T PRK11124 148 QRVAIARALMMEPQVLLFDEPTAALDPEITAQIVS-IIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226 (242)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999888865 555443 47999999999999865 9999999999999999988
Q ss_pred HHHh
Q 000755 826 DILN 829 (1300)
Q Consensus 826 ~l~~ 829 (1300)
++..
T Consensus 227 ~~~~ 230 (242)
T PRK11124 227 CFTQ 230 (242)
T ss_pred HhcC
Confidence 8653
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=319.31 Aligned_cols=193 Identities=22% Similarity=0.288 Sum_probs=164.5
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCeecCCCCHHHHhcccEE
Q 000755 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSI 1134 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p~~G~I~idg~di~~i~~~~lr~~i~~ 1134 (1300)
++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.. .....|++++|
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~~ 78 (200)
T PRK13540 2 LDVIELDFDYHD--QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLCF 78 (200)
T ss_pred EEEEEEEEEeCC--eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheEE
Confidence 789999999975 359999999999999999999999999999999999999999999999998864 34567889999
Q ss_pred EcCCCCCCc-ccHHHhcCCCC--CCCHHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCC
Q 000755 1135 IPQDPTMFE-GTVRNNLDPLE--EYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSK 1211 (1300)
Q Consensus 1135 vpQ~~~lf~-gTvr~Nl~~~~--~~~d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQrl~LARall~~~~ 1211 (1300)
+||++.++. .|+++|+.... ...+..+.++++..++.+... . ...+||+|||||++||||++++|+
T Consensus 79 ~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~----~~~~LS~G~~~rv~laral~~~p~ 147 (200)
T PRK13540 79 VGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLID-------Y----PCGLLSSGQKRQVALLRLWMSKAK 147 (200)
T ss_pred eccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhh-------C----ChhhcCHHHHHHHHHHHHHhcCCC
Confidence 999998874 69999986421 122345777888887754322 2 224699999999999999999999
Q ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhccCEEEE
Q 000755 1212 VLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVIDSDMVLL 1261 (1300)
Q Consensus 1212 iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~~D~v~v 1261 (1300)
+|||||||++||+.+.+.+.+.|++.. .++|+|++||+.+.+..||.-.+
T Consensus 148 ~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 148 LWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred EEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 999999999999999999999999853 47899999999999988987543
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-35 Score=333.28 Aligned_cols=203 Identities=28% Similarity=0.410 Sum_probs=172.6
Q ss_pred eEEEEeEEEEecCCC---CCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC------------
Q 000755 616 AIEIVDGNFAWDISS---NNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG------------ 680 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~~---~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g------------ 680 (1300)
-++++|++++|+... .+++|+|+||+|++||+++|+|+||||||||+++|+|.++|++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 489999999996321 35799999999999999999999999999999999999999999999886
Q ss_pred --eEEEEecCCc--CCCCCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHH
Q 000755 681 --TKAYVAQSPW--IQSGNIEDNILFGKP---MD----REKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQR 749 (1300)
Q Consensus 681 --~~ayv~Q~~~--l~~~Ti~eNI~fg~~---~~----~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqR 749 (1300)
.++|++|+|. ++..|+.||+.|+.. .+ +++++++++.+++.+.++ ....+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRR-----------HAPHLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhh-----------CCcccCCHHHHHH
Confidence 2589999984 566799999998732 22 234566677777755443 3446899999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHH
Q 000755 750 IQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL--RSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDI 827 (1300)
Q Consensus 750 iaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l--~~~TvIlvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l 827 (1300)
++||||++.+|+++||||||++||+.+...+.+ ++..+. .+.|+|++||+++.+..||++++|++|++++.|+++++
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~-~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 231 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVN-TIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEI 231 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999999999999998865 555543 37899999999999888999999999999999999998
Q ss_pred Hhc
Q 000755 828 LNS 830 (1300)
Q Consensus 828 ~~~ 830 (1300)
...
T Consensus 232 ~~~ 234 (280)
T PRK13633 232 FKE 234 (280)
T ss_pred hcC
Confidence 754
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-35 Score=324.59 Aligned_cols=194 Identities=28% Similarity=0.404 Sum_probs=162.0
Q ss_pred eEEEEeEEEEecCCCC-CCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC--------------
Q 000755 616 AIEIVDGNFAWDISSN-NPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-------------- 680 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~~~-~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g-------------- 680 (1300)
.++++|++++|+.... .++|+|+||+|++|++++|+|+||||||||+++|+|.++|++|+|.++|
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 5899999999963221 3599999999999999999999999999999999999999999998876
Q ss_pred ---eEEEEecCCcCCC-CCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHH
Q 000755 681 ---TKAYVAQSPWIQS-GNIEDNILFGKP---MD----REKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQR 749 (1300)
Q Consensus 681 ---~~ayv~Q~~~l~~-~Ti~eNI~fg~~---~~----~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqR 749 (1300)
.++|++|++.++. .|+.||+.++.. .+ .++..++++.+++.+.++ ....+||||||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLD-----------HLPAQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-----------CChhhCCHHHHHH
Confidence 3789999998876 599999986421 11 234556666666654433 3346899999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc-C-CcEEEEEecCCCccccCCEEEEEeCCeEEEe
Q 000755 750 IQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-R-SKTVIYVTHQVEFLPAADLILVMKDGKITQA 821 (1300)
Q Consensus 750 iaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l-~-~~TvIlvtH~~~~l~~~d~i~~l~~G~i~~~ 821 (1300)
++||||++.+|+++||||||++||+.+...+++ .+..+. + ++|+|++||+++++..||++++|++|++++.
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIAD-LLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 999999999999999999999999999888865 454442 3 7899999999999888999999999999753
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-35 Score=333.05 Aligned_cols=205 Identities=29% Similarity=0.466 Sum_probs=172.1
Q ss_pred ceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhcccc-----CCccEEEEcC---------
Q 000755 615 TAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVP-----KISGTLKLCG--------- 680 (1300)
Q Consensus 615 ~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~-----~~~G~i~~~g--------- 680 (1300)
..++++|++++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|.++ |++|+|.++|
T Consensus 24 ~~l~~~nl~~~~~---~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~ 100 (272)
T PRK14236 24 TALEVRNLNLFYG---DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVD 100 (272)
T ss_pred cEEEEEEEEEEEC---CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccC
Confidence 4699999999995 2479999999999999999999999999999999999987 4899998876
Q ss_pred ------eEEEEecCCcCCCCCHHHHHhcCCC---C-C----HHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHH
Q 000755 681 ------TKAYVAQSPWIQSGNIEDNILFGKP---M-D----REKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQ 746 (1300)
Q Consensus 681 ------~~ayv~Q~~~l~~~Ti~eNI~fg~~---~-~----~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQ 746 (1300)
.++|++|++.++..|++||+.++.. . . +++.+++++..++.+++. +..+.++.+|||||
T Consensus 101 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq 173 (272)
T PRK14236 101 VAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK-------DRLHENAFGLSGGQ 173 (272)
T ss_pred HHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHH-------HHhhCCcccCCHHH
Confidence 3589999999998899999987632 1 1 123445555555543332 24567788999999
Q ss_pred HHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCccc-cCCEEEEEeCCeEEEecChH
Q 000755 747 KQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLP-AADLILVMKDGKITQAGKYN 825 (1300)
Q Consensus 747 kqRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~ 825 (1300)
|||++||||++++|+++||||||++||+.+...+.+ .+..+.+++|+|++||+++.+. .||+|++|++|++++.|+++
T Consensus 174 ~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~-~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 252 (272)
T PRK14236 174 QQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEE-LITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTD 252 (272)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHH
Confidence 999999999999999999999999999999887764 5555556789999999999876 49999999999999999999
Q ss_pred HHHhc
Q 000755 826 DILNS 830 (1300)
Q Consensus 826 ~l~~~ 830 (1300)
++...
T Consensus 253 ~~~~~ 257 (272)
T PRK14236 253 TLFTS 257 (272)
T ss_pred HHhcC
Confidence 88653
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=326.20 Aligned_cols=197 Identities=30% Similarity=0.495 Sum_probs=164.5
Q ss_pred EEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC--------------eE
Q 000755 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--------------TK 682 (1300)
Q Consensus 617 I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g--------------~~ 682 (1300)
++++|+++.|+ +.++|+|+||++++||+++|+|+||||||||+++|+|.++|++|+|.++| .+
T Consensus 1 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYG---QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeC---CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 46899999996 24799999999999999999999999999999999999999999999876 26
Q ss_pred EEEecCCcCCCC-CHHHHHhcCCCC-C---HHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHHHHHc
Q 000755 683 AYVAQSPWIQSG-NIEDNILFGKPM-D---REKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALY 757 (1300)
Q Consensus 683 ayv~Q~~~l~~~-Ti~eNI~fg~~~-~---~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLARAly 757 (1300)
+|++|++.++.. |++||+.++... . .+.+.++++..+. ..........+||||||||++||||++
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~----------l~~~~~~~~~~LS~G~~qrv~la~al~ 147 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPV----------LKEMLGRRGGDLSGGQQQQLAIARALV 147 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHh----------HHHHhhCChhhCCHHHHHHHHHHHHHh
Confidence 899999998875 999999876432 1 1222333333221 122345667789999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHH
Q 000755 758 QDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL--RSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDI 827 (1300)
Q Consensus 758 ~~~~illLDep~saLD~~t~~~i~~~~~~~~l--~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 827 (1300)
++|+++||||||++||+.+...+.+ .+.... .++|+|++||+++.+.. ||+|+++++|++++.|+.+++
T Consensus 148 ~~p~illlDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIGR-VIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHH-HHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 9999999999999999999888865 454443 27899999999999885 999999999999999998886
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=321.23 Aligned_cols=189 Identities=29% Similarity=0.445 Sum_probs=159.1
Q ss_pred EEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe-----------EEEE
Q 000755 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KAYV 685 (1300)
Q Consensus 617 I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-----------~ayv 685 (1300)
|+++|++++|+. .. .|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|+
T Consensus 1 i~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 75 (211)
T cd03298 1 VRLDKIRFSYGE---QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSML 75 (211)
T ss_pred CEEEeEEEEeCC---Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEE
Confidence 468999999962 22 3999999999999999999999999999999999999999999883 7999
Q ss_pred ecCCcCCCC-CHHHHHhcCCCC-------CHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHHHHHc
Q 000755 686 AQSPWIQSG-NIEDNILFGKPM-------DREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALY 757 (1300)
Q Consensus 686 ~Q~~~l~~~-Ti~eNI~fg~~~-------~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLARAly 757 (1300)
+|++.++.. |++||+.++... ++++..++++.+++.+..+. ...+||||||||++||||++
T Consensus 76 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~ia~al~ 144 (211)
T cd03298 76 FQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKR-----------LPGELSGGERQRVALARVLV 144 (211)
T ss_pred ecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhC-----------CcccCCHHHHHHHHHHHHHh
Confidence 999998864 999999876421 23355666777666544433 34589999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEecCCCcccc-CCEEEEEeCCeEEEec
Q 000755 758 QDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL--RSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAG 822 (1300)
Q Consensus 758 ~~~~illLDep~saLD~~t~~~i~~~~~~~~l--~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g 822 (1300)
.+|+++||||||++||+++...+.+ .+..+. .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 145 ~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 145 RDKPVLLLDEPFAALDPALRAEMLD-LVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 9999999999999999999888865 455443 37899999999999876 9999999999998654
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=331.95 Aligned_cols=200 Identities=26% Similarity=0.372 Sum_probs=168.6
Q ss_pred ceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC-------------e
Q 000755 615 TAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-------------T 681 (1300)
Q Consensus 615 ~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g-------------~ 681 (1300)
..++++|++++|+ ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 10 ~~l~i~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 86 (265)
T PRK10575 10 TTFALRNVSFRVP---GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARK 86 (265)
T ss_pred ceEEEeeEEEEEC---CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhh
Confidence 3699999999996 24799999999999999999999999999999999999999999999987 2
Q ss_pred EEEEecCCcCCC-CCHHHHHhcCCC--------C---CHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHH
Q 000755 682 KAYVAQSPWIQS-GNIEDNILFGKP--------M---DREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQR 749 (1300)
Q Consensus 682 ~ayv~Q~~~l~~-~Ti~eNI~fg~~--------~---~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqR 749 (1300)
++|++|++-++. .|+.||+.++.. . ++++.+++++.+++.+.++ ....+||||||||
T Consensus 87 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qr 155 (265)
T PRK10575 87 VAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAH-----------RLVDSLSGGERQR 155 (265)
T ss_pred eEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhc-----------CCcccCCHHHHHH
Confidence 699999976654 599999997631 1 1234556666666654332 3345899999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEecCCCccc-cCCEEEEEeCCeEEEecChHH
Q 000755 750 IQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL--RSKTVIYVTHQVEFLP-AADLILVMKDGKITQAGKYND 826 (1300)
Q Consensus 750 iaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l--~~~TvIlvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~ 826 (1300)
++||||+..+|+++||||||++||+.+.+.+.+ .+..+. .++|+|++||+++.+. .||+|++|++|++++.|+.++
T Consensus 156 v~laral~~~p~lllLDEPt~~LD~~~~~~~~~-~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~ 234 (265)
T PRK10575 156 AWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLA-LVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAE 234 (265)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHH
Confidence 999999999999999999999999999888765 455443 3789999999999986 499999999999999999888
Q ss_pred HHh
Q 000755 827 ILN 829 (1300)
Q Consensus 827 l~~ 829 (1300)
+..
T Consensus 235 ~~~ 237 (265)
T PRK10575 235 LMR 237 (265)
T ss_pred hcC
Confidence 754
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=361.80 Aligned_cols=211 Identities=22% Similarity=0.325 Sum_probs=178.2
Q ss_pred EEEEeeeeeeCCCCCcceeeeeEEeeCCcEEEEECCCCCcHHHHHHHHhcCCCC--CcceEEECCeecCCCCHHH-Hhcc
Q 000755 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEP--TAGEIVIDGINISSIGLHD-LRSR 1131 (1300)
Q Consensus 1055 i~~~~v~~~y~~~~~~vL~~isl~i~~Ge~vgIvG~tGsGKSTLl~~L~gl~~p--~~G~I~idg~di~~i~~~~-lr~~ 1131 (1300)
|+++|++++|++ .++|+|+||++++||++||+||||||||||+++|+|+++| ++|+|.++|.++...+... .|++
T Consensus 2 l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (500)
T TIGR02633 2 LEMKGIVKTFGG--VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAG 79 (500)
T ss_pred EEEEeEEEEeCC--eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCC
Confidence 789999999965 3599999999999999999999999999999999999987 7999999999998776554 4567
Q ss_pred cEEEcCCCCCCcc-cHHHhcCCCCC-------CC----HHHHHHHHHHcCCcHHHHhhcCCCccccccCCCCCChhHHHH
Q 000755 1132 LSIIPQDPTMFEG-TVRNNLDPLEE-------YK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQL 1199 (1300)
Q Consensus 1132 i~~vpQ~~~lf~g-Tvr~Nl~~~~~-------~~----d~~i~~~l~~~~l~~~i~~~~~gLdt~v~e~G~~LSgGqrQr 1199 (1300)
++|+||++.+|.. |+++|+..... .. ++++.++++.+++.+... + .....||||||||
T Consensus 80 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~------~----~~~~~LSgG~~qr 149 (500)
T TIGR02633 80 IVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNV------T----RPVGDYGGGQQQL 149 (500)
T ss_pred EEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcc------c----CchhhCCHHHHHH
Confidence 9999999988865 99999864211 11 124566777777643210 1 1235799999999
Q ss_pred HHHHHHHccCCCEEEEeCCCcCCCHHHHHHHHHHHHHhc-CCcEEEEEeCChhhhhc-cCEEEEEeCCEEEEecChhhHH
Q 000755 1200 VCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLL 1277 (1300)
Q Consensus 1200 l~LARall~~~~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~iaHrl~~i~~-~D~v~vl~~G~i~e~g~~~~l~ 1277 (1300)
++|||||+.+|++|||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.+++++..
T Consensus 150 v~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (500)
T TIGR02633 150 VEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTMS 229 (500)
T ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccCC
Confidence 999999999999999999999999999999999998864 46899999999999987 9999999999999999877653
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=323.95 Aligned_cols=187 Identities=25% Similarity=0.421 Sum_probs=157.4
Q ss_pred EEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC----------------
Q 000755 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG---------------- 680 (1300)
Q Consensus 617 I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g---------------- 680 (1300)
++++|++++|+. +.++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 688999999952 35799999999999999999999999999999999999999999998876
Q ss_pred eEEEEecCCcCCC-CCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHH
Q 000755 681 TKAYVAQSPWIQS-GNIEDNILFGKP---MD----REKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQI 752 (1300)
Q Consensus 681 ~~ayv~Q~~~l~~-~Ti~eNI~fg~~---~~----~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaL 752 (1300)
.++|++|+|.++. .|++||+.++.. .+ +++.++.++..++.+.++ ....+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~l 148 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKAD-----------AFPEQLSGGEQQRVAI 148 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHHHHHHH
Confidence 2689999999885 699999987521 22 234556666666654333 3346899999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCCCcccc-CCEEEEEeCCe
Q 000755 753 ARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-RSKTVIYVTHQVEFLPA-ADLILVMKDGK 817 (1300)
Q Consensus 753 ARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l-~~~TvIlvtH~~~~l~~-~d~i~~l~~G~ 817 (1300)
|||++.+|+++||||||++||+.+...+.+ .+..+. +++|+|++||+++.+.. ||+|++|++|+
T Consensus 149 a~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 149 ARAIVNSPPLLLADEPTGNLDPDLSERILD-LLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHhCCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999988875 444443 47999999999999876 99999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-35 Score=331.00 Aligned_cols=202 Identities=23% Similarity=0.376 Sum_probs=169.1
Q ss_pred eEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe-------------E
Q 000755 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------K 682 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-------------~ 682 (1300)
.++++|++++|+. ...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 7 ~l~i~~l~~~~~~-~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQS-DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCC-CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 5899999999963 2246999999999999999999999999999999999999999999999873 5
Q ss_pred EEEecCCc--CCCCCHHHHHhcCCC---CCHH----HHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHH
Q 000755 683 AYVAQSPW--IQSGNIEDNILFGKP---MDRE----KYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIA 753 (1300)
Q Consensus 683 ayv~Q~~~--l~~~Ti~eNI~fg~~---~~~~----~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLA 753 (1300)
+|++|+|+ ++..|+++|+.|+.. ...+ +.+++++..++.+. ......+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~la 154 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLER-----------ADYEPNALSGGQKQRVAIA 154 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchh-----------hhCCcccCCHHHHHHHHHH
Confidence 89999995 456799999988742 2222 33344444444322 2345678999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEecCCCccccCCEEEEEeCCeEEEecChHHHHhc
Q 000755 754 RALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL--RSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNS 830 (1300)
Q Consensus 754 RAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l--~~~TvIlvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 830 (1300)
||++.+|+++||||||++||+.+.+.+++ ++..+. .++|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 155 ral~~~p~lllLDEPt~~LD~~~~~~l~~-~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 155 GVLALNPSVIILDEATSMLDPDARQNLLD-LVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999988875 555443 37899999999998878999999999999999999988654
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-35 Score=328.24 Aligned_cols=198 Identities=29% Similarity=0.439 Sum_probs=167.7
Q ss_pred EEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe-------------EE
Q 000755 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------KA 683 (1300)
Q Consensus 617 I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-------------~a 683 (1300)
++++|++++|+ ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|. ++
T Consensus 3 l~~~~l~~~~~---~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 3 LEARNLSVRLG---GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred EEEEeEEEEeC---CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 78999999996 257999999999999999999999999999999999999999999999873 68
Q ss_pred EEecCCcC-CCCCHHHHHhcCCC-C------CHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHHHH
Q 000755 684 YVAQSPWI-QSGNIEDNILFGKP-M------DREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARA 755 (1300)
Q Consensus 684 yv~Q~~~l-~~~Ti~eNI~fg~~-~------~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLARA 755 (1300)
|++|++.+ +..|++||+.++.. . .+++.+++++..++... ......+||||||||++||||
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGe~qrv~la~a 148 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHL-----------AGRDYPQLSGGEQQRVQLARV 148 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhH-----------hcCCcccCCHHHHHHHHHHHH
Confidence 99999987 67899999988642 1 12234455555555432 234567899999999999999
Q ss_pred Hc------cCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEecCCCccc-cCCEEEEEeCCeEEEecChHH
Q 000755 756 LY------QDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL--RSKTVIYVTHQVEFLP-AADLILVMKDGKITQAGKYND 826 (1300)
Q Consensus 756 ly------~~~~illLDep~saLD~~t~~~i~~~~~~~~l--~~~TvIlvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~ 826 (1300)
++ .+|+++||||||++||+.+.+.+.+ ++..+. +++|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 149 l~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (258)
T PRK13548 149 LAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLR-LARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAE 227 (258)
T ss_pred HhcccccCCCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHH
Confidence 99 5999999999999999999888864 555543 4789999999999987 599999999999999999988
Q ss_pred HHh
Q 000755 827 ILN 829 (1300)
Q Consensus 827 l~~ 829 (1300)
+..
T Consensus 228 ~~~ 230 (258)
T PRK13548 228 VLT 230 (258)
T ss_pred HhC
Confidence 764
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=330.39 Aligned_cols=203 Identities=28% Similarity=0.439 Sum_probs=168.5
Q ss_pred EEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhcccc-----CCccEEEEcC-----------
Q 000755 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVP-----KISGTLKLCG----------- 680 (1300)
Q Consensus 617 I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~-----~~~G~i~~~g----------- 680 (1300)
-+++|++|+|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|.++ |++|+|.++|
T Consensus 6 ~~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYG---SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEEC---CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 46899999995 3579999999999999999999999999999999999986 4799999876
Q ss_pred ----eEEEEecCCcCCCCCHHHHHhcCCC-----CCH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHH
Q 000755 681 ----TKAYVAQSPWIQSGNIEDNILFGKP-----MDR----EKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQK 747 (1300)
Q Consensus 681 ----~~ayv~Q~~~l~~~Ti~eNI~fg~~-----~~~----~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQk 747 (1300)
.++|++|++.++..|+.||+.++.. .+. ++..++++..++.+++. +.++..+.+||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELG-------DRLKDSAFELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhh-------hHhhcChhhCCHHHH
Confidence 2689999999998999999987621 111 22334445444433221 234567789999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHH
Q 000755 748 QRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYND 826 (1300)
Q Consensus 748 qRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 826 (1300)
||++||||++++|+++||||||++||+.+...+.+ .+..+.+++|+|++||+++.+.. ||+|++|++|++++.|+.++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 234 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIEN-LIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQE 234 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999888764 55555568999999999999875 99999999999999999988
Q ss_pred HHhc
Q 000755 827 ILNS 830 (1300)
Q Consensus 827 l~~~ 830 (1300)
+.+.
T Consensus 235 ~~~~ 238 (251)
T PRK14244 235 IFKN 238 (251)
T ss_pred HhcC
Confidence 8754
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-35 Score=326.65 Aligned_cols=199 Identities=24% Similarity=0.390 Sum_probs=166.1
Q ss_pred eEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC--------------e
Q 000755 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--------------T 681 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g--------------~ 681 (1300)
.++++|++++|+ ++++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 3 ~l~~~~l~~~~~---~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYK---GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeC---CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 478999999996 25799999999999999999999999999999999999999999999877 2
Q ss_pred EEEEecCCcCCC-CCHHHHHhcCCC----CCHH----HHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHH
Q 000755 682 KAYVAQSPWIQS-GNIEDNILFGKP----MDRE----KYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQI 752 (1300)
Q Consensus 682 ~ayv~Q~~~l~~-~Ti~eNI~fg~~----~~~~----~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaL 752 (1300)
++|++|++.++. .|++||+.++.. .+.+ +.++.++..+ ..........+||||||||++|
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrv~l 148 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFH-----------IEHLRDSMGQSLSGGERRRVEI 148 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcC-----------CHHHhhcchhhCCHHHHHHHHH
Confidence 699999998876 599999987532 1221 2233333332 2333456678999999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHHHh
Q 000755 753 ARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-RSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDILN 829 (1300)
Q Consensus 753 ARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l-~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 829 (1300)
|||++.+|+++||||||++||+.+...+.+ .+..+. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 149 ARALAANPKFILLDEPFAGVDPISVIDIKR-IIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 999999999999999999999999888764 444433 47999999999987754 99999999999999999988864
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-35 Score=325.00 Aligned_cols=204 Identities=21% Similarity=0.338 Sum_probs=164.9
Q ss_pred eEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe--------------
Q 000755 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 681 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-------------- 681 (1300)
.++++|++++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|.++|++|+|.++|.
T Consensus 5 ~l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYG---KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeC---CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 488999999996 357999999999999999999999999999999999999999999998872
Q ss_pred EEEEecCCcCCC-CCHHHHHhcCCCC-CHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHHHHHccC
Q 000755 682 KAYVAQSPWIQS-GNIEDNILFGKPM-DREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQD 759 (1300)
Q Consensus 682 ~ayv~Q~~~l~~-~Ti~eNI~fg~~~-~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLARAly~~ 759 (1300)
++|++|++.++. .|++||+.++... +.++.++.++. -++.++... ........+||||||||++||||++.+
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~l~~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~ 155 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKW-----VYELFPRLH-ERRIQRAGTMSGGEQQMLAIGRALMSQ 155 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHH-----HHHHHHHHH-HHHhCchhhCCHHHHHHHHHHHHHHhC
Confidence 689999998887 5999999886432 22222221111 111111011 112345678999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHhh-cCCcEEEEEecCCCccc-cCCEEEEEeCCeEEEecChHHHHh
Q 000755 760 ADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LRSKTVIYVTHQVEFLP-AADLILVMKDGKITQAGKYNDILN 829 (1300)
Q Consensus 760 ~~illLDep~saLD~~t~~~i~~~~~~~~-l~~~TvIlvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~ 829 (1300)
|+|+||||||++||+.+.+.+.+ .+..+ .+++|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus 156 p~illlDEPt~~LD~~~~~~l~~-~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 156 PRLLLLDEPSLGLAPIIIQQIFD-TIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred CCEEEEcCccccCCHHHHHHHHH-HHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 99999999999999999888875 44444 35899999999999765 499999999999999999998864
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-35 Score=332.18 Aligned_cols=199 Identities=24% Similarity=0.389 Sum_probs=166.2
Q ss_pred EEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe---------------
Q 000755 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--------------- 681 (1300)
Q Consensus 617 I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~--------------- 681 (1300)
++++|++++|+ ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 2 l~~~~l~~~~~---~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQ---DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcC---CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 67899999996 357999999999999999999999999999999999999999999988762
Q ss_pred EEEEecCCc--CCCCCHHHHHhcCCC---CCHH----HHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHH
Q 000755 682 KAYVAQSPW--IQSGNIEDNILFGKP---MDRE----KYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQI 752 (1300)
Q Consensus 682 ~ayv~Q~~~--l~~~Ti~eNI~fg~~---~~~~----~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaL 752 (1300)
++|++|++. ++..|+.+|+.++.. .+.+ +..++++..++.... .....+||||||||++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrl~l 147 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFR-----------HQPIQCLSHGQKKRVAI 147 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHh-----------cCCchhCCHHHHHHHHH
Confidence 689999985 567799999987521 2222 234455555553322 34567899999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHHHhc
Q 000755 753 ARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-RSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDILNS 830 (1300)
Q Consensus 753 ARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l-~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 830 (1300)
|||++.+|+++||||||++||+.+...+.+ ++..+. +++|+|++||+++.+.. ||++++|++|++++.|+.+++...
T Consensus 148 araL~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 148 AGALVLQARYLLLDEPTAGLDPAGRTQMIA-IIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999888865 454443 47899999999999865 999999999999999999887653
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-35 Score=330.42 Aligned_cols=208 Identities=24% Similarity=0.358 Sum_probs=168.9
Q ss_pred eEEEEeEEEEecCC------CCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC---------
Q 000755 616 AIEIVDGNFAWDIS------SNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--------- 680 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~------~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g--------- 680 (1300)
.++++|++|+|+.. .++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 37899999999632 135799999999999999999999999999999999999999999999876
Q ss_pred -------eEEEEecCCc--C-CCCCHHHHHhcCC----CCCH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCCC
Q 000755 681 -------TKAYVAQSPW--I-QSGNIEDNILFGK----PMDR----EKYDRVLEACSLKKDLEILSFGDQTVIGERGINL 742 (1300)
Q Consensus 681 -------~~ayv~Q~~~--l-~~~Ti~eNI~fg~----~~~~----~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~L 742 (1300)
.++|++|+|. + ...|++|||.++. .++. ++..++++..++.. ...+..+.+|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----------~~~~~~~~~L 151 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRS----------EDADKLPRQL 151 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCChhhC
Confidence 2799999983 3 3579999997532 1222 23334444444421 1235567889
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEecCCCcccc-CCEEEEEeCCeEE
Q 000755 743 SGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL--RSKTVIYVTHQVEFLPA-ADLILVMKDGKIT 819 (1300)
Q Consensus 743 SGGQkqRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l--~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~ 819 (1300)
|||||||++||||++++|+++||||||++||+.+...+.+ ++..+. .++|+|+|||+++.+.. ||++++|++|+++
T Consensus 152 SgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~-~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 230 (265)
T TIGR02769 152 SGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILE-LLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIV 230 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEE
Confidence 9999999999999999999999999999999999887765 555543 27899999999999875 9999999999999
Q ss_pred EecChHHHHhcCchH
Q 000755 820 QAGKYNDILNSGTDF 834 (1300)
Q Consensus 820 ~~g~~~~l~~~~~~~ 834 (1300)
+.|+.+++......+
T Consensus 231 ~~g~~~~~~~~~~~~ 245 (265)
T TIGR02769 231 EECDVAQLLSFKHPA 245 (265)
T ss_pred EECCHHHHcCCCCHH
Confidence 999999987644333
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-35 Score=328.25 Aligned_cols=203 Identities=27% Similarity=0.419 Sum_probs=170.1
Q ss_pred eEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccC-----CccEEEEcC----------
Q 000755 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK-----ISGTLKLCG---------- 680 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~-----~~G~i~~~g---------- 680 (1300)
.++++|+++.|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|.++| ++|+|.++|
T Consensus 3 ~l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYG---ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEEC---CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 478999999996 35799999999999999999999999999999999999986 599999876
Q ss_pred ----eEEEEecCCcCCCCCHHHHHhcCCC---C-CH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHH
Q 000755 681 ----TKAYVAQSPWIQSGNIEDNILFGKP---M-DR----EKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQ 748 (1300)
Q Consensus 681 ----~~ayv~Q~~~l~~~Ti~eNI~fg~~---~-~~----~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkq 748 (1300)
.++|++|++.++..|+.||+.++.. . ++ ++..++++..++.+++. +.......+|||||||
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~~q 152 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVK-------DRLKSHAFGLSGGQQQ 152 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhh-------HHhhcCcccCCHHHHH
Confidence 2689999999988999999987632 1 11 22334444455543332 2345677899999999
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHH
Q 000755 749 RIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDI 827 (1300)
Q Consensus 749 RiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 827 (1300)
|++||||++.+|+++||||||++||+.+...+.+ ++..+.+++|+|++||+++.+.. ||++++|++|++++.|+.+++
T Consensus 153 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (249)
T PRK14253 153 RLCIARTIAMEPDVILMDEPTSALDPIATHKIEE-LMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVI 231 (249)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999888765 56666567899999999999776 999999999999999998887
Q ss_pred Hh
Q 000755 828 LN 829 (1300)
Q Consensus 828 ~~ 829 (1300)
..
T Consensus 232 ~~ 233 (249)
T PRK14253 232 FS 233 (249)
T ss_pred Hc
Confidence 54
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-35 Score=329.42 Aligned_cols=204 Identities=27% Similarity=0.427 Sum_probs=168.7
Q ss_pred eEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccC-----CccEEEEcC----------
Q 000755 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK-----ISGTLKLCG---------- 680 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~-----~~G~i~~~g---------- 680 (1300)
.++++|++++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|
T Consensus 4 ~l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYG---SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeC---CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 488999999996 25799999999999999999999999999999999999987 499998876
Q ss_pred -----eEEEEecCCcCCCC-CHHHHHhcCCCC-----CH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHH
Q 000755 681 -----TKAYVAQSPWIQSG-NIEDNILFGKPM-----DR----EKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGG 745 (1300)
Q Consensus 681 -----~~ayv~Q~~~l~~~-Ti~eNI~fg~~~-----~~----~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGG 745 (1300)
.++|++|++.++.. |+.||+.++... .. ++..++++..++..++. ........+||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 153 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVK-------DRLNDYPSNLSGG 153 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchh-------hhhccChhhCCHH
Confidence 26899999998864 999999875311 12 22334444444432221 2345677899999
Q ss_pred HHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecCh
Q 000755 746 QKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKY 824 (1300)
Q Consensus 746 QkqRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 824 (1300)
||||++||||++++|+++||||||++||+.+...+.+ .+..+.+++|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~ 232 (253)
T PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEE-LLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPT 232 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHH-HHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999888865 55555557899999999998765 999999999999999999
Q ss_pred HHHHhc
Q 000755 825 NDILNS 830 (1300)
Q Consensus 825 ~~l~~~ 830 (1300)
+++.+.
T Consensus 233 ~~~~~~ 238 (253)
T PRK14267 233 RKVFEN 238 (253)
T ss_pred HHHHhC
Confidence 988654
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=326.02 Aligned_cols=195 Identities=29% Similarity=0.453 Sum_probs=156.8
Q ss_pred EEEEeEEEEecCCC-CCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC---------------
Q 000755 617 IEIVDGNFAWDISS-NNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--------------- 680 (1300)
Q Consensus 617 I~i~~~~fs~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g--------------- 680 (1300)
++++|++++|+... ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 68899999996321 13799999999999999999999999999999999999999999999876
Q ss_pred -eEEEEecCCc--C-CCCCHHHHHhcCCC-----CCHHHHH----HHHHHhcchHHHhhccCCCcccccCCCCCCCHHHH
Q 000755 681 -TKAYVAQSPW--I-QSGNIEDNILFGKP-----MDREKYD----RVLEACSLKKDLEILSFGDQTVIGERGINLSGGQK 747 (1300)
Q Consensus 681 -~~ayv~Q~~~--l-~~~Ti~eNI~fg~~-----~~~~~~~----~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQk 747 (1300)
.++|++|++. + ...|++||+.++.. .+++..+ +.++..++. ....+....+||||||
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LS~G~~ 151 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLP----------EEVLNRYPHELSGGQR 151 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCC----------hhHhhCCchhcCHHHH
Confidence 2689999993 3 35799999986421 1111111 222222221 1234567789999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc-C-CcEEEEEecCCCccc-cCCEEEEEeCCeEEEec
Q 000755 748 QRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-R-SKTVIYVTHQVEFLP-AADLILVMKDGKITQAG 822 (1300)
Q Consensus 748 qRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l-~-~~TvIlvtH~~~~l~-~~d~i~~l~~G~i~~~g 822 (1300)
||++||||++.+|+++||||||++||+.+.+.+.+ .+..+. + ++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 152 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 152 QRVAIARALALNPKLLIADEPTSALDVSVQAQILD-LLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 99999999999999999999999999999888865 455443 3 789999999999987 59999999999998654
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=308.15 Aligned_cols=162 Identities=27% Similarity=0.445 Sum_probs=146.9
Q ss_pred EEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC--eEEEEecCCcCCCC
Q 000755 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--TKAYVAQSPWIQSG 694 (1300)
Q Consensus 617 I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g--~~ayv~Q~~~l~~~ 694 (1300)
|+++|++++|+. .+++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++| .++|++|++++++.
T Consensus 1 i~~~~~~~~~~~--~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~ 78 (166)
T cd03223 1 IELENLSLATPD--GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLG 78 (166)
T ss_pred CEEEEEEEEcCC--CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccc
Confidence 468999999952 25799999999999999999999999999999999999999999999987 79999999999999
Q ss_pred CHHHHHhcCCCCCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEecCCCCCCH
Q 000755 695 NIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDA 774 (1300)
Q Consensus 695 Ti~eNI~fg~~~~~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLARAly~~~~illLDep~saLD~ 774 (1300)
|++||+.++ ....||||||||++||||++++|++++|||||++||+
T Consensus 79 tv~~nl~~~----------------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~ 124 (166)
T cd03223 79 TLREQLIYP----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDE 124 (166)
T ss_pred cHHHHhhcc----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCH
Confidence 999999864 2468999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEEecCCCccccCCEEEEEeCCe
Q 000755 775 HTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGK 817 (1300)
Q Consensus 775 ~t~~~i~~~~~~~~l~~~TvIlvtH~~~~l~~~d~i~~l~~G~ 817 (1300)
++.+.+.+ .+... ++|+|++||+++....||+|++|++|.
T Consensus 125 ~~~~~l~~-~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 125 ESEDRLYQ-LLKEL--GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred HHHHHHHH-HHHHh--CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 99888865 44443 689999999999877899999998864
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-35 Score=328.96 Aligned_cols=199 Identities=29% Similarity=0.408 Sum_probs=166.6
Q ss_pred EEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcC----------------
Q 000755 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG---------------- 680 (1300)
Q Consensus 617 I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g---------------- 680 (1300)
|+++|++++|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 1 i~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFG---ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeC---CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 47899999996 25799999999999999999999999999999999999999999998876
Q ss_pred ----------eEEEEecCCcCC-CCCHHHHHhcCCC----CCH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCC
Q 000755 681 ----------TKAYVAQSPWIQ-SGNIEDNILFGKP----MDR----EKYDRVLEACSLKKDLEILSFGDQTVIGERGIN 741 (1300)
Q Consensus 681 ----------~~ayv~Q~~~l~-~~Ti~eNI~fg~~----~~~----~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~ 741 (1300)
.++|++|++.++ ..|+.||+.++.. ... +++.+.++..++.+ .......+
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~ 146 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLAD-----------KADHMPAQ 146 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-----------HhhcChhh
Confidence 268999999887 4799999987521 222 23344444444432 33456678
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEecCCCccc-cCCEEEEEeCCeE
Q 000755 742 LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL--RSKTVIYVTHQVEFLP-AADLILVMKDGKI 818 (1300)
Q Consensus 742 LSGGQkqRiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l--~~~TvIlvtH~~~~l~-~~d~i~~l~~G~i 818 (1300)
||||||||++||||++++|+++||||||++||+.+...+++ .+..+. .++|+|++||+++.+. .||++++|++|++
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i 225 (252)
T TIGR03005 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLN-VIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRI 225 (252)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 99999999999999999999999999999999999888865 455443 3789999999999986 4999999999999
Q ss_pred EEecChHHHHhc
Q 000755 819 TQAGKYNDILNS 830 (1300)
Q Consensus 819 ~~~g~~~~l~~~ 830 (1300)
++.|+++++.+.
T Consensus 226 ~~~g~~~~~~~~ 237 (252)
T TIGR03005 226 VEQGKPDEIFRQ 237 (252)
T ss_pred EEeCCHHHHhcC
Confidence 999999988654
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-35 Score=331.59 Aligned_cols=201 Identities=31% Similarity=0.470 Sum_probs=169.5
Q ss_pred eEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe-------------E
Q 000755 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------K 682 (1300)
Q Consensus 616 ~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~-------------~ 682 (1300)
.++++|++++|+. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|. +
T Consensus 3 ~l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 80 (277)
T PRK13652 3 LIETRDLCYSYSG--SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFV 80 (277)
T ss_pred eEEEEEEEEEeCC--CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 4789999999952 246999999999999999999999999999999999999999999999873 6
Q ss_pred EEEecCCc--CCCCCHHHHHhcCCC---CCHH----HHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHH
Q 000755 683 AYVAQSPW--IQSGNIEDNILFGKP---MDRE----KYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIA 753 (1300)
Q Consensus 683 ayv~Q~~~--l~~~Ti~eNI~fg~~---~~~~----~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLA 753 (1300)
+||+|+|. +++.|+.||+.++.. .+.+ ++++.++.+++.+.+ ......||||||||++||
T Consensus 81 ~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~Gq~qrl~la 149 (277)
T PRK13652 81 GLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELR-----------DRVPHHLSGGEKKRVAIA 149 (277)
T ss_pred EEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHh-----------cCCcccCCHHHHHHHHHH
Confidence 99999983 678899999987532 3332 345566666665433 334568999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEecCCCccc-cCCEEEEEeCCeEEEecChHHHHhc
Q 000755 754 RALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL--RSKTVIYVTHQVEFLP-AADLILVMKDGKITQAGKYNDILNS 830 (1300)
Q Consensus 754 RAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l--~~~TvIlvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 830 (1300)
||++.+|+++||||||++||+.+.+.+.+ .+..+. .+.|+|++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 150 raL~~~p~llilDEPt~gLD~~~~~~l~~-~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 150 GVIAMEPQVLVLDEPTAGLDPQGVKELID-FLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 99999999999999999999999888765 454443 2789999999999985 5999999999999999999998653
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-35 Score=330.06 Aligned_cols=201 Identities=23% Similarity=0.331 Sum_probs=169.5
Q ss_pred cceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe------------
Q 000755 614 ETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------ 681 (1300)
Q Consensus 614 ~~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~------------ 681 (1300)
...|+++|++++|+ +.++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 5 ~~~l~i~~l~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (265)
T PRK10253 5 VARLRGEQLTLGYG---KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVAR 81 (265)
T ss_pred ccEEEEEEEEEEEC---CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhh
Confidence 34799999999996 246999999999999999999999999999999999999999999999873
Q ss_pred -EEEEecCCcCC-CCCHHHHHhcCC-CC-------C---HHHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHH
Q 000755 682 -KAYVAQSPWIQ-SGNIEDNILFGK-PM-------D---REKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQ 748 (1300)
Q Consensus 682 -~ayv~Q~~~l~-~~Ti~eNI~fg~-~~-------~---~~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkq 748 (1300)
++|++|++.++ +.|++||+.++. +. . .++.+++++..++.+. ......+|||||||
T Consensus 82 ~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~Gq~q 150 (265)
T PRK10253 82 RIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHL-----------ADQSVDTLSGGQRQ 150 (265)
T ss_pred heEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHH-----------hcCCcccCChHHHH
Confidence 69999999876 479999998762 11 1 2234455555555432 34566789999999
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChH
Q 000755 749 RIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL--RSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYN 825 (1300)
Q Consensus 749 RiaLARAly~~~~illLDep~saLD~~t~~~i~~~~~~~~l--~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 825 (1300)
|++||||++++|+++||||||++||+.+...+.+ .+..+. .++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 151 rv~laral~~~p~llllDEPt~gLD~~~~~~l~~-~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 229 (265)
T PRK10253 151 RAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLE-LLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPK 229 (265)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999998875 444443 37899999999998765 9999999999999999998
Q ss_pred HHHh
Q 000755 826 DILN 829 (1300)
Q Consensus 826 ~l~~ 829 (1300)
++..
T Consensus 230 ~~~~ 233 (265)
T PRK10253 230 EIVT 233 (265)
T ss_pred HHhh
Confidence 8764
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=340.88 Aligned_cols=201 Identities=25% Similarity=0.414 Sum_probs=168.3
Q ss_pred ceEEEEeEEEEecCCCCCCceecceeEEeCCcEEEEEcCCCCChHHHHHHHhccccCCccEEEEcCe------------E
Q 000755 615 TAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------K 682 (1300)
Q Consensus 615 ~~I~i~~~~fs~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llG~~~~~~G~i~~~g~------------~ 682 (1300)
..|+++|++++|+ +..+|+|+||+|++|++++++||||||||||+++|+|+++|++|+|.++|. +
T Consensus 40 ~~i~i~nl~k~y~---~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~i 116 (340)
T PRK13536 40 VAIDLAGVSKSYG---DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARI 116 (340)
T ss_pred eeEEEEEEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccE
Confidence 4699999999996 356999999999999999999999999999999999999999999999873 6
Q ss_pred EEEecCCcCC-CCCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCCCCHHHHHHHHHHH
Q 000755 683 AYVAQSPWIQ-SGNIEDNILFGKP---MDR----EKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIAR 754 (1300)
Q Consensus 683 ayv~Q~~~l~-~~Ti~eNI~fg~~---~~~----~~~~~vl~~~~l~~dl~~l~~Gd~t~ige~g~~LSGGQkqRiaLAR 754 (1300)
+|++|++.++ ..|++||+.|... .+. ++.+++++.+++.+ ....+..+||||||||++|||
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~-----------~~~~~~~~LS~G~kqrv~lA~ 185 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLES-----------KADARVSDLSGGMKRRLTLAR 185 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-----------hhCCChhhCCHHHHHHHHHHH
Confidence 9999999885 6799999975221 222 22333444444332 223455689999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHhh-cCCcEEEEEecCCCcccc-CCEEEEEeCCeEEEecChHHHHhc
Q 000755 755 ALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LRSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDILNS 830 (1300)
Q Consensus 755 Aly~~~~illLDep~saLD~~t~~~i~~~~~~~~-l~~~TvIlvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 830 (1300)
||.++|+++||||||++||+.++..+++ .+..+ ..++|+|++||+++.+.. ||+|++|++|+++..|+.+++.+.
T Consensus 186 aL~~~P~lLiLDEPt~gLD~~~r~~l~~-~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 186 ALINDPQLLILDEPTTGLDPHARHLIWE-RLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 9999999999999999999999998875 44443 358999999999999875 999999999999999999998653
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1300 | ||||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 2e-57 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 4e-10 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 7e-42 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 5e-06 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 8e-42 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 5e-06 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 3e-41 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 2e-04 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 3e-41 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 2e-04 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 2e-40 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 5e-06 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 3e-40 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 1e-04 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 3e-40 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 1e-04 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 8e-40 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 6e-05 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 1e-39 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 3e-06 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 1e-39 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 4e-06 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-39 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 7e-06 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 4e-39 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 2e-04 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 4e-38 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 1e-37 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 8e-05 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 3e-33 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 8e-32 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-28 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-28 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 2e-28 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 8e-28 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 3e-26 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 1e-27 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 1e-27 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 3e-27 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 2e-27 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 2e-27 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 2e-26 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 2e-27 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 7e-27 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 9e-25 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 3e-23 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 4e-22 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 4e-22 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 5e-22 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 2e-21 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 2e-21 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 4e-21 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 2e-20 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 2e-20 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 9e-18 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 5e-17 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 5e-16 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 8e-16 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-15 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 4e-14 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 5e-14 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 8e-14 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 2e-13 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 2e-13 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 1e-04 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 9e-12 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 1e-08 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 2e-11 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 7e-11 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 8e-11 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 6e-06 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 8e-11 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 9e-11 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 1e-10 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 7e-06 | ||
| 1g29_1 | 372 | Malk Length = 372 | 2e-10 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 2e-10 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 2e-05 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 2e-10 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 3e-10 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 4e-10 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 6e-09 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 7e-10 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 5e-09 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 1e-09 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 2e-09 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 3e-09 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 3e-09 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 5e-09 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 5e-09 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 8e-09 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 1e-08 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 8e-08 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 1e-07 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 9e-07 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 5e-07 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 7e-07 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 1e-06 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 4e-06 | ||
| 2pjz_A | 263 | The Crystal Structure Of Putative Cobalt Transport | 5e-06 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 9e-06 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 3e-04 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 1e-05 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 1e-05 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 1e-05 | ||
| 1sgw_A | 214 | Putative Abc Transporter (Atp-Binding Protein) From | 2e-05 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 3e-05 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 4e-05 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 9e-05 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 1e-04 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 1e-04 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 1e-04 | ||
| 3j16_B | 608 | Models Of Ribosome-Bound Dom34p And Rli1p And Their | 3e-04 | ||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 7e-04 |
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp- Binding Protein (cbio-2), St1066 Length = 263 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608 | Back alignment and structure |
|
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 458 bits (1180), Expect = e-150
Identities = 91/264 (34%), Positives = 147/264 (55%), Gaps = 3/264 (1%)
Query: 1039 VIEES--RPDCSWPTHGEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKS 1096
+IE S + D WP+ G++ + +L +Y +L ++ + G + G++GRTGSGKS
Sbjct: 2 LIENSHVKKDDIWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKS 61
Query: 1097 TLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEEY 1156
TL+ R++ GEI IDG++ SI L R +IPQ +F GT R NLDP +
Sbjct: 62 TLLSAFLRLLNT-EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAH 120
Query: 1157 KDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLD 1216
D+EIW+ D+ L + GKLD + + G S G +QL+CL R +L K+K+L+LD
Sbjct: 121 SDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLD 180
Query: 1217 EATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKL 1276
E +A +D T +I++TL+Q F+DCTVI RI ++++ D L++ + +YDS +L
Sbjct: 181 EPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILEL 240
Query: 1277 LENKSSSFAQLVAEYTQRSSSSLE 1300
+ F + + ++
Sbjct: 241 YHYPADRFVAGFIGSPKMNFLPVK 264
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 1e-24
Identities = 56/251 (22%), Positives = 101/251 (40%), Gaps = 19/251 (7%)
Query: 633 PTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK---------- 682
L +I+ + G RV + G GSGKS+LLS L + G +++ G
Sbjct: 35 AILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL-NTEGEIQIDGVSWDSITLEQWR 93
Query: 683 ---AYVAQSPWIQSGNIEDNI-LFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGER 738
+ Q +I SG N+ D+E + +V + L+ +E V+ +
Sbjct: 94 KAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIW-KVADEVGLRSVIEQFPGKLDFVLVDG 152
Query: 739 GINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVT 798
G LS G KQ + +AR++ A I L D+P + +D T + + L TVI
Sbjct: 153 GCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQ-IIRRTLKQAFADCTVILCE 211
Query: 799 HQVEFLPAADLILVMKDGKITQAGKYNDIL-NSGTDFMVLV-GAHQQALSALDSIEGGPV 856
++E + D LV+++ K+ Q ++ F+ G+ + +
Sbjct: 212 ARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVAGFIGSPKMNFLPVKVTATAID 271
Query: 857 SERISMNKENG 867
++ + N
Sbjct: 272 QVQVELPMPNR 282
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 423 bits (1089), Expect = e-138
Identities = 92/288 (31%), Positives = 155/288 (53%), Gaps = 8/288 (2%)
Query: 583 QTKVSLDRIASFLCLDDLQSDVVEKHPRGSSETAIEIVDGN--FAWDISSNNPTLRDINL 640
T+V ++ + +F ++ ++ EK + ++ D + F+ P L+DIN
Sbjct: 2 TTEVVMENVTAFW--EEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTPVLKDINF 59
Query: 641 KVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGNIEDNI 700
K+ G +AV G+ G+GK+SLL I+GE+ G +K G ++ +Q+ WI G I++NI
Sbjct: 60 KIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTIKENI 119
Query: 701 LFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDA 760
+ G D +Y V++AC L++D+ + D V+GE GI LSGGQ+ RI +ARA+Y+DA
Sbjct: 120 I-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDA 178
Query: 761 DIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQ 820
D+YL D PF +D T +F+ + L+ +KT I VT ++E L AD IL++ +G
Sbjct: 179 DLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYF 238
Query: 821 AGKYNDILNSGTDFMVLVGAHQQALSALDSIEGGPVSE---RISMNKE 865
G ++++ N DF + ++E R S+ +
Sbjct: 239 YGTFSELQNLRPDFSSKLMGCDSFDQFSAERRNSILTETLHRFSLEGD 286
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 9e-30
Identities = 52/288 (18%), Positives = 111/288 (38%), Gaps = 32/288 (11%)
Query: 1021 ISVERILQY--TCISSEPPLVIEESRPDCSWPTHGEVDILNLQVRYAPHLPLVLRGLTCT 1078
+ +E + + + + + + N + P VL+ +
Sbjct: 5 VVMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTP----VLKDINFK 60
Query: 1079 FPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQD 1138
G + G TG+GK++L+ + +EP+ G+I G R+S Q+
Sbjct: 61 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQN 107
Query: 1139 PTMFEGTVRNNLDPL-EEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQR 1197
+ GT++ N+ + Y + + CQL +++ K + + E G S GQR
Sbjct: 108 SWIMPGTIKENI--IGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQR 165
Query: 1198 QLVCLGRVLLKKSKVLVLDEATASVDTAT-----DNLIQQTLRQHFSDCTVITIAHRITS 1252
+ L R + K + + +LD +D T ++ + + + + T I + ++
Sbjct: 166 ARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA----NKTRILVTSKMEH 221
Query: 1253 VIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLVAEYTQRSSSSLE 1300
+ +D +L+L G Y + ++L + F+ + S E
Sbjct: 222 LKKADKILILHEGSSYFYGTFSELQNLR-PDFSSKLMGCDSFDQFSAE 268
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 408 bits (1052), Expect = e-134
Identities = 109/228 (47%), Positives = 152/228 (66%), Gaps = 3/228 (1%)
Query: 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGT 675
+I + + F W S+ PTL I + G VAV G VG GKSSLLS +L E+ K+ G
Sbjct: 3 SITVRNATFTWA-RSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 61
Query: 676 LKLCGTKAYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVI 735
+ + G+ AYV Q WIQ+ ++ +NILFG ++ Y V++AC+L DLEIL GD+T I
Sbjct: 62 VAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEI 121
Query: 736 GERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLL--GLLRSKT 793
GE+G+NLSGGQKQR+ +ARA+Y +ADIYLFDDP SAVDAH G H+F+ V+ G+L++KT
Sbjct: 122 GEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKT 181
Query: 794 VIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSGTDFMVLVGAH 841
I VTH + +LP D+I+VM GKI++ G Y ++L F + +
Sbjct: 182 RILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFLRTY 229
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 7e-27
Identities = 55/251 (21%), Positives = 107/251 (42%), Gaps = 25/251 (9%)
Query: 1053 GEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGE 1112
+ + N +A P L G+T + P G +VG+ G GKS+L+ L ++ G
Sbjct: 2 NSITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 61
Query: 1113 IVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPL--EEYKDEEIWEALDKCQL 1170
+ I G ++ +PQ + ++R N+ L + ++ + C L
Sbjct: 62 VAIKG-------------SVAYVPQQAWIQNDSLRENI--LFGCQLEEPYYRSVIQACAL 106
Query: 1171 GDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTAT---- 1226
++ + + E G N S GQ+Q V L R + + + + D+ ++VD
Sbjct: 107 LPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHI 166
Query: 1227 -DNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFA 1285
+N+I + + T I + H ++ + D+++++S G I E S +LL +FA
Sbjct: 167 FENVIGP--KGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARD-GAFA 223
Query: 1286 QLVAEYTQRSS 1296
+ + Y
Sbjct: 224 EFLRTYASHHH 234
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 407 bits (1048), Expect = e-133
Identities = 85/225 (37%), Positives = 133/225 (59%), Gaps = 1/225 (0%)
Query: 613 SETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKI 672
+ T + + + W+ P L+DIN K+ G +AV G+ G+GK+SLL I+GE+
Sbjct: 3 TTTEVVMENVTAFWE-EGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS 61
Query: 673 SGTLKLCGTKAYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQ 732
G +K G ++ +Q WI G I++NI+FG D +Y V++AC L++D+ + D
Sbjct: 62 EGKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDN 121
Query: 733 TVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSK 792
V+GE GI LSGGQ+ RI +ARA+Y+DAD+YL D PF +D T +F+ + L+ +K
Sbjct: 122 IVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANK 181
Query: 793 TVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSGTDFMVL 837
T I VT ++E L AD IL++ +G G ++++ N DF
Sbjct: 182 TRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSK 226
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 114 bits (289), Expect = 8e-29
Identities = 51/246 (20%), Positives = 104/246 (42%), Gaps = 26/246 (10%)
Query: 1051 THGEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTA 1110
T EV + N+ + VL+ + G + G TG+GK++L+ + +EP+
Sbjct: 3 TTTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE 62
Query: 1111 GEIVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPL--EEYKDEEIWEALDKC 1168
G+I G R+S Q + GT++ N+ + Y + + C
Sbjct: 63 GKIKHSG-------------RISFCSQFSWIMPGTIKENI--IFGVSYDEYRYRSVIKAC 107
Query: 1169 QLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTAT-- 1226
QL +++ K + + E G S GQR + L R + K + + +LD +D T
Sbjct: 108 QLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEK 167
Query: 1227 ---DNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSS 1283
++ + + + + T I + ++ + +D +L+L G Y + ++L +
Sbjct: 168 EIFESCVCKLMA----NKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDF 223
Query: 1284 FAQLVA 1289
++L+
Sbjct: 224 SSKLMG 229
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 210 bits (536), Expect = 6e-58
Identities = 88/378 (23%), Positives = 166/378 (43%), Gaps = 25/378 (6%)
Query: 915 HFSETISGSTTIRSFDQES----RFRDTNMKLVDGYSRPKFHIAGAMEWLCFRLDMLSSL 970
E + G + ++SF E F N + + A + + + ++ +
Sbjct: 202 FLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAI----NTVTDI 257
Query: 971 TFAFSLVL-LISIPKGVIEPAIAGLAVTYGLNLNMLQAWVIWNLCNLENK----IISVER 1025
+ + G I G + L +L + L S++R
Sbjct: 258 GPIIVIGVGAYLAISGSITV---GTLAAFVGYLELL-FGPLRRLVASFTTLTQSFASMDR 313
Query: 1026 ILQYTCISSEPPLVIEESRPDCSWPTHGEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKT 1085
+ Q + E + G +DI ++ +Y + +L+ + + G
Sbjct: 314 VFQ---LIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETV 370
Query: 1086 GIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDPTMFEGT 1145
VG +G GKSTLI + R + T+G+I+IDG NI LR+++ ++ QD +F T
Sbjct: 371 AFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDT 430
Query: 1146 VRNNL---DPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCL 1202
V+ N+ P DEE+ EA D + N D+ V E G S GQ+Q + +
Sbjct: 431 VKENILLGRP--TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSI 488
Query: 1203 GRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLL 1262
R+ L +L+LDEAT+++D ++++IQ+ L D T + +AHR++++ +D ++++
Sbjct: 489 ARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVI 548
Query: 1263 SHGIIEEYDSPTKLLENK 1280
+G I E + +L+ +
Sbjct: 549 ENGHIVETGTHRELIAKQ 566
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 178 bits (453), Expect = 3e-47
Identities = 125/580 (21%), Positives = 229/580 (39%), Gaps = 73/580 (12%)
Query: 299 WKEIVFTAILALLYTLANYVGPYL----IDTFVQYLNGEREFKNEGYV--LVSTFFVAKI 352
I T I+ ++ + P L ID + + K + F+ I
Sbjct: 13 KYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVI 72
Query: 353 VECLAQRHWMFRLQVAGIKMRSVLVSMVYNKGLTLSCQAKQSYTSGEIINFMTVDAERIG 412
V + + Q K+ + +YN LS + + G++I+ + D E+
Sbjct: 73 VRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTK 132
Query: 413 DFGWYMHDPWLVILQ----VSLALLILYKNLGLASIAALFATVLIMLTNFPLGRLQENFQ 468
DF + + L + ++ + ++ L A I+ GRL++ +
Sbjct: 133 DF--ILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTR 190
Query: 469 DKLMGSKDKRMKVTS---EILRNMRILKL---QGWEM-KFLSKIIELRKIEAGWLKKFLY 521
+ +V E ++ + ++K + E F K LK +
Sbjct: 191 E----RSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTR---ALKHTRW 243
Query: 522 TGAMTSFV-FWGAPTFVSVATFGACMLLGIPLESGKILSALATFRILQEPIYNLPDTISM 580
+ + + V GA + + + G + + + +L P+ L + +
Sbjct: 244 NAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTT 303
Query: 581 IIQTKVSLDRIASFLCLDDLQSDVVEK-------HPRGSSETAIEIVDGNFAWDISSNNP 633
+ Q+ S+DR+ + D D+ +G I+I +F ++ + P
Sbjct: 304 LTQSFASMDRVFQLI---DEDYDIKNGVGAQPIEIKQG----RIDIDHVSFQYN-DNEAP 355
Query: 634 TLRDINLKVFHGMRVAVCGTVGSGKSSLLSCIL-------GEVPKISG------TLK-LC 679
L+DINL + G VA G G GKS+L++ I G++ I G L
Sbjct: 356 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQI-LIDGHNIKDFLTGSLR 414
Query: 680 GTKAYVAQSPWIQSGNIEDNILFGKP--MDREKYDRVLEACSLKKDLEILSF------GD 731
V Q + S +++NIL G+P D E V+EA K F G
Sbjct: 415 NQIGLVQQDNILFSDTVKENILLGRPTATDEE----VVEAA---KMANAHDFIMNLPQGY 467
Query: 732 QTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRS 791
T +GERG+ LSGGQKQR+ IAR + I + D+ SA+D + + +E L L +
Sbjct: 468 DTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLES-ESIIQEALDVLSKD 526
Query: 792 KTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSG 831
+T + V H++ + AD I+V+++G I + G + +++
Sbjct: 527 RTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQ 566
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 209 bits (534), Expect = 1e-57
Identities = 90/392 (22%), Positives = 164/392 (41%), Gaps = 43/392 (10%)
Query: 899 RELSRLVGVCKAPVIQHFSETISGSTTIRSFDQE----SRFRDTNMKLVDGYSRPKFHIA 954
R +S+ + V + + G + F + RF + K+
Sbjct: 190 RSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRL---------- 239
Query: 955 GAMEWLCFRLDMLSSLTFAFSLVLLISIPKGVIEPAIAGLAVTYG-LNLNMLQAWV---- 1009
++ SS++ ++ V+ A L +
Sbjct: 240 -----QGMKMVSASSISDPIIQLIASLALAFVL--YAASFPSVMDSLTAGTITVVFSSMI 292
Query: 1010 -----IWNLCNLENKI----ISVERILQYTCISSEPPLVIEESRPDCSWPTHGEVDILNL 1060
+ +L N+ + + + + I E R G+++ N+
Sbjct: 293 ALMRPLKSLTNVNAQFQRGMAACQTLFA---ILDSEQEKDEGKRV--IDRATGDLEFRNV 347
Query: 1061 QVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINI 1120
Y LR + P G +VGR+GSGKST+ + R + G I++DG ++
Sbjct: 348 TFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDL 407
Query: 1121 SSIGLHDLRSRLSIIPQDPTMFEGTVRNN--LDPLEEYKDEEIWEALDKCQLGDEVRNKE 1178
L LR++++++ Q+ +F TV NN EEY E+I EA D + +
Sbjct: 408 REYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMD 467
Query: 1179 GKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF 1238
LD+ + ENG S GQRQ + + R LL+ S +L+LDEAT+++DT ++ IQ L +
Sbjct: 468 NGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ 527
Query: 1239 SDCTVITIAHRITSVIDSDMVLLLSHG-IIEE 1269
+ T + IAHR++++ +D ++++ G I+E
Sbjct: 528 KNRTSLVIAHRLSTIEQADEIVVVEDGIIVER 559
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 183 bits (466), Expect = 8e-49
Identities = 105/562 (18%), Positives = 232/562 (41%), Gaps = 45/562 (8%)
Query: 299 WKEIVFTAILALLYTLANYVGPYLIDTFVQYLNGEREFKNEGYVLVSTFFVAKIVECLAQ 358
++ I +L ++ L+ + G+ + ++ + + I+ +
Sbjct: 24 KAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLM-ILRGITS 82
Query: 359 RHWMFRLQVAGIKMRSVLVSMVYNKGLTLSCQAKQSYTSGEIINFMTVDAERIGDFGWYM 418
+ + K+ + ++ + + ++G +++ +T D+E++
Sbjct: 83 YISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASS---S 139
Query: 419 HDPWLVILQ-----VSLALLILYKNLGLASIAALFATVLIMLTNFPLGRLQENFQD--KL 471
+ +++ + L +++ Y + L+ I + A ++ + R + ++
Sbjct: 140 SGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNT 199
Query: 472 MGSKDKRMKVTSEILRNMRILKL---QGWEM-KFLSKIIELRKIEAGWLKKFLYTGAMTS 527
MG + ++L+ + + + Q E +F ++R +K +
Sbjct: 200 MG---QVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQ---GMKMVSASSISDP 253
Query: 528 FV-FWGAPTFVSVATFGACMLLGIPLESGKILSALATFRILQEPIYNLPDTISMIIQTKV 586
+ + V + + L +G I ++ L P+ +L + + +
Sbjct: 254 IIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMA 313
Query: 587 SLDRIASFLCLDDLQSDVVE-KHPRGSSETAIEIVDGNFAWDISSNNPTLRDINLKVFHG 645
+ + + L D + + E K + +E + F + P LR+INLK+ G
Sbjct: 314 ACQTLFAIL---DSEQEKDEGKRVIDRATGDLEFRNVTFTYP-GREVPALRNINLKIPAG 369
Query: 646 MRVAVCGTVGSGKSSLLSCIL-------GEVPKISG------TLK-LCGTKAYVAQSPWI 691
VA+ G GSGKS++ S I G + + G TL L A V+Q+ +
Sbjct: 370 KTVALVGRSGSGKSTIASLITRFYDIDEGHI-LMDGHDLREYTLASLRNQVALVSQNVHL 428
Query: 692 QSGNIEDNILFGKP--MDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQR 749
+ + +NI + + RE+ + + + G T+IGE G+ LSGGQ+QR
Sbjct: 429 FNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQR 488
Query: 750 IQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADL 809
I IARAL +D+ I + D+ SA+D + + L L +++T + + H++ + AD
Sbjct: 489 IAIARALLRDSPILILDEATSALDTES-ERAIQAALDELQKNRTSLVIAHRLSTIEQADE 547
Query: 810 ILVMKDGKITQAGKYNDILNSG 831
I+V++DG I + G ++++L
Sbjct: 548 IVVVEDGIIVERGTHSELLAQH 569
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 196 bits (501), Expect = 6e-57
Identities = 69/240 (28%), Positives = 129/240 (53%), Gaps = 5/240 (2%)
Query: 1052 HGEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAG 1111
H ++ N++ RY P P++L + + G GIVGR+GSGKSTL + + R P G
Sbjct: 5 HHDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 1112 EIVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNL---DPLEEYKDEEIWEALDKC 1168
+++IDG +++ + LR ++ ++ QD + ++ +N+ +P E++ A
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP--GMSVEKVIYAAKLA 122
Query: 1169 QLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDN 1228
D + ++ V E G S GQRQ + + R L+ K+L+ DEAT+++D +++
Sbjct: 123 GAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEH 182
Query: 1229 LIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLV 1288
+I + + + TVI IAHR+++V ++D ++++ G I E +LL S ++ L
Sbjct: 183 VIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLY 242
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 3e-34
Identities = 74/232 (31%), Positives = 114/232 (49%), Gaps = 24/232 (10%)
Query: 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCIL-------GE 668
I + F + + L +INL + G + + G GSGKS+L I G+
Sbjct: 7 DITFRNIRFRYK-PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 669 VPKISGT-LKLCGTK------AYVAQSPWIQSGNIEDNILFGKP-MDREKYDRVLEACSL 720
V I G L L V Q + + +I DNI P M E +V+ A L
Sbjct: 66 V-LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVE---KVIYAAKL 121
Query: 721 KKDLE-ILSF--GDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTG 777
+ I G T++GE+G LSGGQ+QRI IARAL + I +FD+ SA+D +
Sbjct: 122 AGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYES- 180
Query: 778 SHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILN 829
H+ + + + +TVI + H++ + AD I+VM+ GKI + GK+ ++L+
Sbjct: 181 EHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLS 232
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 207 bits (528), Expect = 8e-57
Identities = 93/393 (23%), Positives = 172/393 (43%), Gaps = 24/393 (6%)
Query: 899 RELSRLVGVCKAPVIQHFSETISGSTTIRSFDQE----SRFRDTNMKLVDGYSRPKFHIA 954
R++SR + V + + G + S+ + RF + + + +
Sbjct: 190 RKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMR----QQTMKLV 245
Query: 955 GAMEWLCFRLDMLSSLTFAFSLVL-LISIPKGVIEPAIAGLAVTYGLNLNMLQAWVIWNL 1013
A + M++SL L L + + + P G + L + L
Sbjct: 246 SAQSIADPVIQMIASLALFAVLFLASVDSIRAELTP---GTFTVVFSAMFGL-MRPLKAL 301
Query: 1014 CNLENKI----ISVERILQYTCISSEPPLVIEESRPDCSWPTHGEVDILNLQVRYAPHLP 1069
++ ++ + + + + + +GEVD+ ++ Y
Sbjct: 302 TSVTSEFQRGMAACQTLFG---LMDLETERDNGKYE--AERVNGEVDVKDVTFTYQGKEK 356
Query: 1070 LVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLR 1129
L ++ + P G +VGR+GSGKST+ R + +G I +DG ++ L +LR
Sbjct: 357 PALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLR 416
Query: 1130 SRLSIIPQDPTMFEGTVRNN--LDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTE 1187
+++ Q+ +F T+ NN EY E+I +A + + + N LD+ + E
Sbjct: 417 RHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGE 476
Query: 1188 NGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIA 1247
NG + S GQRQ V + R LL+ + VL+LDEAT+++DT ++ IQ L + + TV+ IA
Sbjct: 477 NGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIA 536
Query: 1248 HRITSVIDSDMVLLLSHGIIEEYDSPTKLLENK 1280
HR++++ +D +L++ G I E LL
Sbjct: 537 HRLSTIEQADEILVVDEGEIIERGRHADLLAQD 569
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 184 bits (470), Expect = 2e-49
Identities = 105/564 (18%), Positives = 225/564 (39%), Gaps = 49/564 (8%)
Query: 299 WKEIVFTAILALLYTLANYVGPYLIDTFVQYLNGEREFKNEGYVLVSTF--FVAKIVECL 356
+V + I ++ A+ L+ + G E + + +
Sbjct: 24 KAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLRILPFMILGLMFVRGLSGF 83
Query: 357 AQRHWMFRLQVAGIKMRSVLVSMVYNKGLTLSCQAKQSYTSGEIINFMTVDAERIGDFGW 416
A + + + + + ++N + + + ++G +++ +T D+E++
Sbjct: 84 ASSYCLSWV---SGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGA-- 138
Query: 417 YMHDPWLVILQ-----VSLALLILYKNLGLASIAALFATVLIMLTNFPLGRLQENFQD-- 469
+ I++ + L L+ + + L+ + + A V+ +F R ++ ++
Sbjct: 139 -TSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQ 197
Query: 470 KLMGSKDKRMKVTSEILRNMRILKL---QGWEM-KFLSKIIELRKIEAGWLKKFLYTGAM 525
MG ++L+ +++ Q E +F +R+ +K
Sbjct: 198 TAMG---HVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQ---TMKLVSAQSIA 251
Query: 526 TSFV-FWGAPTFVSVATFGACMLLGIPLESGKILSALATFRILQEPIYNLPDTISMIIQT 584
+ + +V + + L G + L P+ L S +
Sbjct: 252 DPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRG 311
Query: 585 KVSLDRIASFLCLDDLQSDVVE-KHPRGSSETAIEIVDGNFAWDISSNNPTLRDINLKVF 643
+ + + DL+++ K+ +++ D F + P L ++ +
Sbjct: 312 MAACQTLFGLM---DLETERDNGKYEAERVNGEVDVKDVTFTYQ-GKEKPALSHVSFSIP 367
Query: 644 HGMRVAVCGTVGSGKSSLLSCIL-------GEVPKISG------TLK-LCGTKAYVAQSP 689
G VA+ G GSGKS++ + G + + G L L A V+Q+
Sbjct: 368 QGKTVALVGRSGSGKSTIANLFTRFYDVDSGSI-CLDGHDVRDYKLTNLRRHFALVSQNV 426
Query: 690 WIQSGNIEDNILFGKPMD--REKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQK 747
+ + I +NI + + RE+ ++ + +E + G TVIGE G +LSGGQ+
Sbjct: 427 HLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQR 486
Query: 748 QRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAA 807
QR+ IARAL +DA + + D+ SA+D + + L L ++KTV+ + H++ + A
Sbjct: 487 QRVAIARALLRDAPVLILDEATSALDTES-ERAIQAALDELQKNKTVLVIAHRLSTIEQA 545
Query: 808 DLILVMKDGKITQAGKYNDILNSG 831
D ILV+ +G+I + G++ D+L
Sbjct: 546 DEILVVDEGEIIERGRHADLLAQD 569
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 205 bits (524), Expect = 3e-56
Identities = 84/262 (32%), Positives = 143/262 (54%), Gaps = 8/262 (3%)
Query: 1021 ISVERILQYTCISSEPPLVIEESRPDCSWPTHGEVDILNLQVRYAPHLPLVLRGLTCTFP 1080
S +R+L+ + +E P + E G V N++ RY + VL G+ +
Sbjct: 311 ASAKRVLE---VLNEKPAIEEADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVK 367
Query: 1081 GGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDPT 1140
G ++G TGSGKSTL+ + R+++P G + +D +++ ++ L DLR +S +PQ+
Sbjct: 368 PGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETV 427
Query: 1141 MFEGTVRNNL---DPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQR 1197
+F GT++ NL + D+EI EA Q+ D + + DSRV G N+S GQ+
Sbjct: 428 LFSGTIKENLKWGRE--DATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQK 485
Query: 1198 QLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSD 1257
Q + + R L+KK KVL+LD+ T+SVD T+ I L+++ CT I +I + + +D
Sbjct: 486 QRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLAD 545
Query: 1258 MVLLLSHGIIEEYDSPTKLLEN 1279
+L+L G + + + +LLE+
Sbjct: 546 KILVLHEGKVAGFGTHKELLEH 567
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 158 bits (402), Expect = 1e-40
Identities = 101/443 (22%), Positives = 187/443 (42%), Gaps = 70/443 (15%)
Query: 424 VILQVSLALLILYKNLGLASIAALFATV-LIMLTNFPLGRLQENFQDKLMGSKDKRMKVT 482
V + V L+ +++ I + + PL R Q+ D+ +V
Sbjct: 159 VSINVKLSSVLI------FLIPPIVLLFVWLTKKGNPLFR---KIQEST----DEVNRVV 205
Query: 483 SEILRNMRILKL---QGWEM-KFLSKIIELRKIEAGWLKKFLYTGAMTSFVFWGAPTF-- 536
E L +R+++ + +E F LR+ + ++ F P F
Sbjct: 206 RENLLGVRVVRAFRREEYENENFRKANESLRRS-------IISAFSLIVFAL---PLFIF 255
Query: 537 ------VSVATFGACMLLGIPLESGKILSALA-TFRILQEPIYNLPDTISMIIQTKVSLD 589
++V FG ++ +E G I++ +I+ + + + ++ I++ S
Sbjct: 256 IVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMM-IGNILNFIVRASASAK 314
Query: 590 RIASFLCLDDLQSDVVEK---HPRGSSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGM 646
R+ L + + + E + E ++ + F + + +P L +N V G
Sbjct: 315 RVLEVL---NEKPAIEEADNALALPNVEGSVSFENVEFRYF-ENTDPVLSGVNFSVKPGS 370
Query: 647 RVAVCGTVGSGKSSLLSCIL-------GEVPKISG------TLK-LCGTKAYVAQSPWIQ 692
VAV G GSGKS+L++ I G V ++ LK L G + V Q +
Sbjct: 371 LVAVLGETGSGKSTLMNLIPRLIDPERGRV-EVDELDVRTVKLKDLRGHISAVPQETVLF 429
Query: 693 SGNIEDNILFGKPM--DREKYDRVLEACSLKKDLE-ILSFGDQ--TVIGERGINLSGGQK 747
SG I++N+ +G+ D E ++EA + + + I+S + + + G N SGGQK
Sbjct: 430 SGTIKENLKWGREDATDDE----IVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQK 485
Query: 748 QRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAA 807
QR+ IARAL + + + DD S+VD T + + L + T +T ++ A
Sbjct: 486 QRLSIARALVKKPKVLILDDCTSSVDPITEKRI-LDGLKRYTKGCTTFIITQKIPTALLA 544
Query: 808 DLILVMKDGKITQAGKYNDILNS 830
D ILV+ +GK+ G + ++L
Sbjct: 545 DKILVLHEGKVAGFGTHKELLEH 567
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 196 bits (500), Expect = 4e-56
Identities = 75/268 (27%), Positives = 136/268 (50%), Gaps = 17/268 (6%)
Query: 1020 IISVERILQYTCISSEPPLVIEESRPDCS--WPTHGEVDILNLQVRYAPHLPLVLRGLTC 1077
I +E + + E V + P G ++ N+ YA L+ ++
Sbjct: 22 FIDMENMFD---LLKEETEVKD--LPGAGPLRFQKGRIEFENVHFSYADGRE-TLQDVSF 75
Query: 1078 TFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQ 1137
T G +VG +G+GKST+++ LFR + ++G I IDG +IS + LRS + ++PQ
Sbjct: 76 TVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQ 135
Query: 1138 DPTMFEGTVRNNLDPLEEY-----KDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENW 1192
D +F T+ +N+ Y ++E+ A + D + ++V E G
Sbjct: 136 DTVLFNDTIADNI----RYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKL 191
Query: 1193 SMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITS 1252
S G++Q V + R +LK +++LDEAT+++DT+ + IQ +L + ++ T I +AHR+++
Sbjct: 192 SGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLST 251
Query: 1253 VIDSDMVLLLSHGIIEEYDSPTKLLENK 1280
V+++D +L++ G I E LL
Sbjct: 252 VVNADQILVIKDGCIVERGRHEALLSRG 279
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 141 bits (358), Expect = 4e-37
Identities = 74/285 (25%), Positives = 130/285 (45%), Gaps = 29/285 (10%)
Query: 567 LQEPIYNLPDTISMIIQTKVSLDRIASFLCLDDLQSDVVEK---HPRGSSETAIEIVDGN 623
++ + + ++ + L +++V + P + IE + +
Sbjct: 4 SHHHHHHSSGLVPRGSHMFIDMENMFDLL---KEETEVKDLPGAGPLRFQKGRIEFENVH 60
Query: 624 FAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCIL-------GEVPKISG-- 674
F++ TL+D++ V G +A+ G G+GKS++L + G + +I G
Sbjct: 61 FSYA--DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCI-RIDGQD 117
Query: 675 ----TLK-LCGTKAYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLE-ILS 728
T L V Q + + I DNI +G+ D V A + I++
Sbjct: 118 ISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGN--DEVEAAAQAAGIHDAIMA 175
Query: 729 F--GDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLL 786
F G +T +GERG+ LSGG+KQR+ IAR + + I L D+ SA+D + L
Sbjct: 176 FPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSN-ERAIQASLA 234
Query: 787 GLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSG 831
+ ++T I V H++ + AD ILV+KDG I + G++ +L+ G
Sbjct: 235 KVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSRG 279
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 193 bits (492), Expect = 9e-56
Identities = 75/229 (32%), Positives = 122/229 (53%), Gaps = 4/229 (1%)
Query: 1063 RYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISS 1122
Y +LR ++ G +G GKST+ L R +PTAGEI IDG I +
Sbjct: 10 AYDDSEQ-ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDN 68
Query: 1123 IGLHDLRSRLSIIPQDPTMFEGTVRNNLD--PLEEYKDEEIWEALDKCQLGDEVRNKEGK 1180
I L + RS++ + QD + GT+R NL +Y DE++W+ LD V N +
Sbjct: 69 ISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQ 128
Query: 1181 LDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSD 1240
L++ V E G S GQRQ + + R L+ K+L+LDEATAS+D+ +++++Q+ L
Sbjct: 129 LNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKG 188
Query: 1241 CTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLVA 1289
T + IAHR+++++D+D + + G I +L+ +A+ V+
Sbjct: 189 RTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVA-THPLYAKYVS 236
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 3e-35
Identities = 59/232 (25%), Positives = 117/232 (50%), Gaps = 22/232 (9%)
Query: 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCIL-------GEV 669
+ +FA+D + LRDI+ + +A G G GKS++ S + GE+
Sbjct: 2 LSARHVDFAYD--DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 670 PKISG------TLK-LCGTKAYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKK 722
I G +L+ +V+Q I +G I +N+ +G D + + + L
Sbjct: 60 -TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTD-EDLWQVLDLAF 117
Query: 723 DLE-ILSF--GDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSH 779
+ + T +GERG+ +SGGQ+QR+ IARA ++ I + D+ +++D+ +
Sbjct: 118 ARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSES-ES 176
Query: 780 LFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSG 831
+ ++ L L++ +T + + H++ + AD I ++ G+IT +GK+N+++ +
Sbjct: 177 MVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATH 228
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 206 bits (526), Expect = 4e-54
Identities = 89/408 (21%), Positives = 189/408 (46%), Gaps = 40/408 (9%)
Query: 914 QHFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFHIAGAMEWLCFRLDMLSSLTFA 973
+ +E I T+ S +E +F + + R + + +TF+
Sbjct: 891 KIATEAIENFRTVVSLTREQKFETMYAQSLQIPYR-----------NAMKKAHVFGITFS 939
Query: 974 FSLVLLIS------------IPKGVIEPA---IAGLAVTYG-LNLNMLQAWVIWNLCNLE 1017
F+ ++ + + ++ + A+ +G + + + ++ +
Sbjct: 940 FTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFA----PDYA 995
Query: 1018 NKIISVERILQYTCISSEPPLVIEESRPDCSWPTHGEVDILNLQVRY--APHLPLVLRGL 1075
+S I++ I P + ++ G V + Y P +P VL+GL
Sbjct: 996 KATVSASHIIRI--IEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIP-VLQGL 1052
Query: 1076 TCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSII 1135
+ G +VG +G GKST++Q L R +P AG + +DG I + + LR++L I+
Sbjct: 1053 SLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIV 1112
Query: 1136 PQDPTMFEGTVRNNL---DPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENW 1192
Q+P +F+ ++ N+ D EEI A + + + + K ++RV + G
Sbjct: 1113 SQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQL 1172
Query: 1193 SMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITS 1252
S GQ+Q + + R L+++ +L+LDEAT+++DT ++ ++Q+ L + T I IAHR+++
Sbjct: 1173 SGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLST 1232
Query: 1253 VIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLVAEYTQRSSSSLE 1300
+ ++D+++++ +G ++E+ + +LL K + +V+ S +
Sbjct: 1233 IQNADLIVVIQNGKVKEHGTHQQLLAQK-GIYFSMVSVQAGAKRSYVH 1279
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 188 bits (480), Expect = 1e-48
Identities = 82/391 (20%), Positives = 174/391 (44%), Gaps = 38/391 (9%)
Query: 917 SETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFHIAGAMEWLCFRLDMLSSLTFAFSL 976
E ++ T+ +F + + ++ Y+ ++ A + + ++++ +
Sbjct: 251 EEVLAAIRTVIAFGGQKK-------ELERYNN---NLEEAKRL-GIKKAITANISMGAAF 299
Query: 977 VLLIS------------IPKGVIEPA---IAGLAVTYG-LNLNMLQAWVIWNLCNLENKI 1020
+L+ + + +V G ++ N+ N
Sbjct: 300 LLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASP----NIEAFANAR 355
Query: 1021 ISVERILQYTCISSEPPLVIEESRPDCSWPTHGEVDILNLQVRYA--PHLPLVLRGLTCT 1078
+ + + I ++P + G ++ N+ Y + +L+GL
Sbjct: 356 GAAYEVFKI--IDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQ-ILKGLNLK 412
Query: 1079 FPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQD 1138
G +VG +G GKST +Q + R+ +P G + IDG +I +I + LR + ++ Q+
Sbjct: 413 VKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQE 472
Query: 1139 PTMFEGTVRNNLDP-LEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQR 1197
P +F T+ N+ E+ +EI +A+ + D + + D+ V E G S GQ+
Sbjct: 473 PVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQK 532
Query: 1198 QLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSD 1257
Q + + R L++ K+L+LDEAT+++DT ++ ++Q L + T I IAHR+++V ++D
Sbjct: 533 QRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNAD 592
Query: 1258 MVLLLSHGIIEEYDSPTKLLENKSSSFAQLV 1288
++ G+I E + +L+ + + +LV
Sbjct: 593 VIAGFDGGVIVEQGNHDELMR-EKGIYFKLV 622
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 167 bits (425), Expect = 6e-42
Identities = 116/593 (19%), Positives = 226/593 (38%), Gaps = 80/593 (13%)
Query: 302 IVFTAILALLYTLANYVGPYLIDTFVQYLNGEREFKNEGYVLVSTFFVAKIVECLAQ--R 359
I I L + + ++ F E + + F + I+ + +
Sbjct: 711 IFCAIINGGLQPAFSVIFSKVVGVFTNGGPPE-TQRQNSNLFSLLFLILGIISFITFFLQ 769
Query: 360 HWMFRLQVAGIKMRSVLVSMVYNKGLTLSCQ--AKQSYTSGEIINFMTVDAERIGDFGWY 417
+ F AG + L MV+ L T+G + + DA ++
Sbjct: 770 GFTF--GKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGA--- 824
Query: 418 MHDPWLVILQVSLALLI-LYKNLGLASIAALFATV---LIMLTNFPLGRLQENFQDKLMG 473
LA++ NLG I +L L++L P+ + + K++
Sbjct: 825 --------TGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLS 876
Query: 474 SKDKRMK--------VTSEILRNMRILKLQGWEMKFLSKIIE-LRKIEAGWLKKFLYTGA 524
+ + K + +E + N R + E KF + + L+ +KK G
Sbjct: 877 GQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFG- 935
Query: 525 MTSFVFWGAPTFVSVATFGACMLLGIPLESGKILSALATFRILQEPIY----------NL 574
+ + + ++ A G L + ++++ + ++
Sbjct: 936 ----ITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFA 991
Query: 575 PDTISMIIQTKVSLDRIASFLCLDDLQSDVVEKHPRG----SSETAIEIVDGNFAWDISS 630
PD + VS I + + ++ +G E ++ F +
Sbjct: 992 PD----YAKATVSASHIIRII---EKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRP 1044
Query: 631 NNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK-------- 682
+ P L+ ++L+V G +A+ G+ G GKS+++ + ++G++ L G +
Sbjct: 1045 SIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQW 1104
Query: 683 -----AYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSF------GD 731
V+Q P + +I +NI +G Y+ ++ A K+ I F
Sbjct: 1105 LRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAA---KEANIHQFIDSLPDKY 1161
Query: 732 QTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRS 791
T +G++G LSGGQKQRI IARAL + I L D+ SA+D + + +E L
Sbjct: 1162 NTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTES-EKVVQEALDKAREG 1220
Query: 792 KTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSGTDFMVLVGAHQQA 844
+T I + H++ + ADLI+V+++GK+ + G + +L + +V A
Sbjct: 1221 RTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSVQAGA 1273
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 157 bits (398), Expect = 8e-39
Identities = 101/495 (20%), Positives = 193/495 (38%), Gaps = 41/495 (8%)
Query: 396 TSGEIINFMTVDAERIGD-FGWYMHDPWLVILQVSLALLI-LYKNLGLASIAALFATVLI 453
GE+ +T D +I + G + + + +I + L + L + ++
Sbjct: 163 DVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVI-LAISPVL 221
Query: 454 MLTNFPLGRLQENFQDKLMGSKDKRMKVTSEILRNMRILKLQGWEMKFLSKIIE-LRKIE 512
L+ ++ +F DK + + K V E+L +R + G + K L + L + +
Sbjct: 222 GLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAK 281
Query: 513 AGWLKKFLYTGAMTSFVFWGAPTFVSVAT---FGACMLLGIPLESGKILSALATFRILQE 569
+KK + F + S A +G +++ G++L+ + I
Sbjct: 282 RLGIKKAITANISMGAAF--LLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAF 339
Query: 570 PIYNLPDTISMIIQTKVSLDRIASFLCLDDLQSDVVEKHPRG----SSETAIEIVDGNFA 625
+ I + + + + D + + G + + +E + +F+
Sbjct: 340 SVGQASPNIEAFANARGAAYEVFKII---DNKPSIDSFSKSGHKPDNIQGNLEFKNIHFS 396
Query: 626 WDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK--- 682
+ L+ +NLKV G VA+ G G GKS+ + + + G + + G
Sbjct: 397 YPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRT 456
Query: 683 ----------AYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSF--- 729
V+Q P + + I +NI +G+ D + +A K+ F
Sbjct: 457 INVRYLREIIGVVSQEPVLFATTIAENIRYGRE--DVTMDEIEKAV---KEANAYDFIMK 511
Query: 730 ---GDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLL 786
T++GERG LSGGQKQRI IARAL ++ I L D+ SA+D + + + L
Sbjct: 512 LPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTES-EAVVQAALD 570
Query: 787 GLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSGTDFMVLVGAHQQALS 846
+T I + H++ + AD+I G I + G +++++ + LV
Sbjct: 571 KAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQTAGNE 630
Query: 847 ALDSIEGGPVSERIS 861
E + I
Sbjct: 631 IELGNEACKSKDEID 645
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 192 bits (491), Expect = 7e-52
Identities = 111/405 (27%), Positives = 188/405 (46%), Gaps = 54/405 (13%)
Query: 915 HFSETISGSTTIRSFDQE----SRFRDTNMKLVDGYSRPKFHIAGAMEWLCFRLDMLSSL 970
E ISG T I+ F +E +F N L ++ + +G + L ++M+++L
Sbjct: 218 IIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQI-FSGVLPPL---MNMVNNL 273
Query: 971 TFAFSLVLLISIPKGVIEPAIAGLAVTYGLNLNMLQAWV---------IWNLCNLENKII 1021
FA G LA+ + + + ++ + L N N I
Sbjct: 274 GFALISGF------GGW------LALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQ 321
Query: 1022 S----VERILQYTCISSEPPLVIEESRPDCSWPTHGEVDILNLQVRYAPHLPLVLRGLTC 1077
ERI + I + + GE++ N+ Y P+ L+ +T
Sbjct: 322 MALASAERIFE---ILDLEEEKDDPDAVELR-EVRGEIEFKNVWFSYDKKKPV-LKDITF 376
Query: 1078 TFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQ 1137
G K +VG TGSGK+T++ L R + G+I++DGI+I I LRS + I+ Q
Sbjct: 377 HIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQ 436
Query: 1138 DPTMFEGTVRNNLDPLEEY-----KDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENW 1192
D +F TV+ NL +Y DEEI EA +++ ++ +T+NGE+
Sbjct: 437 DTILFSTTVKENL----KYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDL 492
Query: 1193 SMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITS 1252
S GQRQL+ + R L K+L+LDEAT++VDT T+ IQ + + T I IAHR+ +
Sbjct: 493 SQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNT 552
Query: 1253 VIDSDMVLLLSHGIIEEYDSPTKLLENK-------SSSFAQLVAE 1290
+ ++D++++L G I E +L++ + +S + +V +
Sbjct: 553 IKNADLIIVLRDGEIVEMGKHDELIQKRGFYYELFTSQYGLVVEK 597
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 132 bits (335), Expect = 4e-32
Identities = 116/580 (20%), Positives = 224/580 (38%), Gaps = 100/580 (17%)
Query: 299 WKEIVFTAILALLYTLANYVGPYLIDTFVQYLNGEREFKNEGYVL--VSTFFVAKIVECL 356
++ + + ++ + PYLI + + R F + + T + +
Sbjct: 36 TFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDLLPRYMLILGTIYALTSLLFW 95
Query: 357 AQRHWMFRL-QVAGIKMRSVLVSMVYNKGLTLSCQAKQSYTSGEIINFMTVDAERIGDFG 415
Q M L Q ++R ++ K + G+II+ + D + I +
Sbjct: 96 LQGKIMLTLSQDVVFRLRK----ELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNV- 150
Query: 416 WYMHDPWLVILQVSLALLI-------------LYKNLGLASIAALFATVLIMLTNFPLGR 462
L S+ N+ L+ + + +++T +
Sbjct: 151 ----------LGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVSSQ 200
Query: 463 LQENF--QDKLMGSKDKRMKVTS---EILRNMRILKLQGWEMKFLSKIIEL--RKIEAGW 515
++ F +++G ++ E + + ++KL E K + K + + G
Sbjct: 201 TRKYFYENQRVLG------QLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGT 254
Query: 516 LKKFLYTGAM---TSFVFWGAPTFVSVATFGACMLLGIPLESGKILSALATFRILQEPIY 572
+ ++G + + V F ++ FG + L + G I + + R P+
Sbjct: 255 KAQI-FSGVLPPLMNMV--NNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLN 311
Query: 573 NLPDTISMIIQTKVSLDRIASFLCLDDLQSDVVEKHPRGSSET--AIEIVDGNFAWDISS 630
L + +MI S +RI L DL+ + + E IE + F++D
Sbjct: 312 ELSNQFNMIQMALASAERIFEIL---DLEEEKDDPDAVELREVRGEIEFKNVWFSYD--K 366
Query: 631 NNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILG--EVPKISGTLKLCGTK------ 682
P L+DI + G +VA+ G GSGK+++++ ++ +V G + + G
Sbjct: 367 KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD--RGQILVDGIDIRKIKR 424
Query: 683 -------AYVAQSPWIQSGNIEDNILFGKP--MDREKYDRVLEACSLKKDLEILSF---- 729
V Q + S +++N+ +G P D E + EA K F
Sbjct: 425 SSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEE----IKEAA---KLTHSDHFIKHL 477
Query: 730 --GDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLL- 786
G +TV+ + G +LS GQ+Q + I RA + I + D+ S VD T E +
Sbjct: 478 PEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKT------EKSIQ 531
Query: 787 ----GLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAG 822
L+ KT I + H++ + ADLI+V++DG+I + G
Sbjct: 532 AAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMG 571
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 181 bits (463), Expect = 1e-51
Identities = 72/234 (30%), Positives = 123/234 (52%), Gaps = 11/234 (4%)
Query: 1053 GEVDILNLQVRYAPHLP-LVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAG 1111
++ ++ Y L+ + P G +VG TGSGKST+ + L+R + G
Sbjct: 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAE-G 74
Query: 1112 EIVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEEY-----KDEEIWEALD 1166
+I I G N++ + +RS + I+PQD +F T++ N+ Y DEE+ +A
Sbjct: 75 DIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNI----LYGKLDATDEEVIKATK 130
Query: 1167 KCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTAT 1226
QL D + K D+ V G S G+RQ + + R LLK K+++ DEAT+S+D+ T
Sbjct: 131 SAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKT 190
Query: 1227 DNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENK 1280
+ L Q+ + + T+I IAHR++++ ++ ++LL+ G I E + LL+
Sbjct: 191 EYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLN 244
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 132 bits (334), Expect = 2e-34
Identities = 71/251 (28%), Positives = 129/251 (51%), Gaps = 24/251 (9%)
Query: 597 LDDLQSDVVEKHPRGSSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGS 656
L+ EK + IE D NF++ +N+ TL+ IN + G A+ G GS
Sbjct: 2 LESFSLTSHEKKFGVN----IEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGS 57
Query: 657 GKSSLLSCIL------GEVPKISG------TLK-LCGTKAYVAQSPWIQSGNIEDNILFG 703
GKS++ + G++ KI G + V Q + + I+ NIL+G
Sbjct: 58 GKSTIAKLLYRFYDAEGDI-KIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYG 116
Query: 704 KPMDREKYDRVLEACSLKKDLE-ILSF--GDQTVIGERGINLSGGQKQRIQIARALYQDA 760
K + + V++A + + I + T++G +G+ LSGG++QRI IAR L +D
Sbjct: 117 KLDATD--EEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDP 174
Query: 761 DIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQ 820
I +FD+ S++D+ T +LF++ + L +++T+I + H++ + +A+ I+++ GKI +
Sbjct: 175 KIVIFDEATSSLDSKT-EYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVE 233
Query: 821 AGKYNDILNSG 831
G + D+L
Sbjct: 234 KGTHKDLLKLN 244
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 166 bits (422), Expect = 4e-46
Identities = 71/255 (27%), Positives = 123/255 (48%), Gaps = 8/255 (3%)
Query: 1052 HGEVDILNLQVRYAPHLP--LVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPT 1109
G V ++ Y P+ P VL+GLT T G T +VG GSGKST+ L + +PT
Sbjct: 14 KGLVKFQDVSFAY-PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 1110 AGEIVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLD--PLEEYKDEEIWEALDK 1167
G++++DG + H L ++++ + Q+P +F + R N+ EEI +
Sbjct: 73 GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132
Query: 1168 CQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATD 1227
D + D+ V E G S GQRQ V L R L++K ++L+LD AT+++D
Sbjct: 133 SGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQ 192
Query: 1228 NLIQQTLRQ--HFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFA 1285
+Q+ L + ++ TV+ I +++ + +L L G + E + +L+E +
Sbjct: 193 LRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERG-GCYR 251
Query: 1286 QLVAEYTQRSSSSLE 1300
+V S ++
Sbjct: 252 SMVEALAAPSDAAAH 266
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 2e-33
Identities = 61/250 (24%), Positives = 107/250 (42%), Gaps = 22/250 (8%)
Query: 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 676
++ D +FA+ N L+ + ++ G A+ G GSGKS++ + + G +
Sbjct: 17 VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKV 76
Query: 677 KLCGTK-------------AYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKD 723
L G A V Q P + + +NI +G + +
Sbjct: 77 LLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLT-RTPTMEEITAVAMESGA 135
Query: 724 LE-ILSF--GDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGS-H 779
+ I F G T +GE G LSGGQ+Q + +ARAL + + + D+ SA+DA +
Sbjct: 136 HDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAG--NQL 193
Query: 780 LFKEVL--LGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSGTDFMVL 837
+ +L S+TV+ +T Q+ A IL +K+G + + G + ++ G + +
Sbjct: 194 RVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSM 253
Query: 838 VGAHQQALSA 847
V A A
Sbjct: 254 VEALAAPSDA 263
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 130 bits (328), Expect = 2e-33
Identities = 64/249 (25%), Positives = 108/249 (43%), Gaps = 44/249 (17%)
Query: 613 SETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKI 672
S I++ L+ I+ ++ G + + G G+GK++LL+ + P
Sbjct: 18 SHMLIQLDQIGRMKQ---GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT 74
Query: 673 SGTLKLCGTK---------------AYVAQS---PWIQSGNIEDNILFGK----PMDREK 710
SGT+ L G +V+ S + + + D ++ G + ++
Sbjct: 75 SGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDI 134
Query: 711 YDRVLE-ACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPF 769
D + A L K + + + Q IG LS G+KQR+ IARAL + + D+P
Sbjct: 135 DDEIRNEAHQLLKLVGMSAKAQQY-IGY----LSTGEKQRVMIARALMGQPQVLILDEPA 189
Query: 770 SAVDAHTGSHLFKEVLLGLLR-------SKTVIYVTHQVEFLPAA-DLILVMKDGKITQA 821
+ +D +E LL +L + +IYVTH +E + A IL++KDG+ Q
Sbjct: 190 AGLDFIA-----RESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQ 244
Query: 822 GKYNDILNS 830
G DIL S
Sbjct: 245 GAVEDILTS 253
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 96.5 bits (241), Expect = 5e-22
Identities = 48/252 (19%), Positives = 90/252 (35%), Gaps = 35/252 (13%)
Query: 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIV 1114
+ + + +L+ ++ G K + G G+GK+TL+ L T+G +
Sbjct: 22 IQLDQIGRMKQGKT--ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVN 79
Query: 1115 IDGINISSIG--LHDLRSRLSIIPQD---PTMFEGTVRNN--------LDPLEEYKDEEI 1161
+ G +G +R + + V + + ++ DE
Sbjct: 80 LFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIR 139
Query: 1162 WEA---LDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEA 1218
EA L + K + S G++Q V + R L+ + +VL+LDE
Sbjct: 140 NEAHQLLKLVGMSA-------KAQQYIGY----LSTGEKQRVMIARALMGQPQVLILDEP 188
Query: 1219 TASVDTATDNLIQQTLR---QHFSDCTVITIAHRITSVIDS-DMVLLLSHGIIEEYDSPT 1274
A +D + L + +I + H I + + +LLL G + +
Sbjct: 189 AAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVE 248
Query: 1275 KLL--ENKSSSF 1284
+L EN S F
Sbjct: 249 DILTSENMSRFF 260
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 4e-32
Identities = 57/265 (21%), Positives = 104/265 (39%), Gaps = 42/265 (15%)
Query: 629 SSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------- 681
+L +INL+V +G +V + G GSGK++LL I G +P SG + + G
Sbjct: 15 GYERFSLENINLEV-NGEKVIILGPNGSGKTTLLRAISGLLPY-SGNIFINGMEVRKIRN 72
Query: 682 -KAYVAQSPWIQSG--NIEDNILFG---KPMDREKYDRVLEACSLKKDLEILSFGDQTVI 735
Y P + D + K +DR+ + +L+A L +++
Sbjct: 73 YIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEIL---------- 122
Query: 736 GERGIN-LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRS--K 792
R + LS GQ ++ + AL +I D+PF VDA + V+ ++ K
Sbjct: 123 -RRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAAR-----RHVISRYIKEYGK 176
Query: 793 TVIYVTH-QVEFLPAADLILVM-KDGKITQAGKYNDILNS------GTDFMVLVGAHQQA 844
I VTH + ++ +++L S D ++++ +
Sbjct: 177 EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLESSIVEGERNDALLVLDIMDKK 236
Query: 845 LSALDSIEGGPVSERISMNKENGGM 869
+S + G S+N+ G +
Sbjct: 237 VSIVKGDLGMKFGALGSLNRIYGII 261
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 95.5 bits (238), Expect = 9e-22
Identities = 48/235 (20%), Positives = 98/235 (41%), Gaps = 30/235 (12%)
Query: 1055 VDILNLQVRY--APHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGE 1112
+ + N+ + + L + G I+G GSGK+TL++ + ++ P +G
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVNGEK-VIILGPNGSGKTTLLRAISGLL-PYSGN 59
Query: 1113 IVIDGINISSIGLHDLRSRLSIIPQDPTMF--EGTVRNNLD-PLEEYK--DEEIWEALDK 1167
I I+G+ + +R+ + P + TV + + E + E L
Sbjct: 60 IFINGMEVR-----KIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKA 114
Query: 1168 CQLGDEVRNKE-GKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTAT 1226
+LG+E+ ++ KL S GQ LV L + +++ LDE +VD A
Sbjct: 115 LKLGEEILRRKLYKL-----------SAGQSVLVRTSLALASQPEIVGLDEPFENVDAAR 163
Query: 1227 DNLIQQTLRQHFSDCTVITIAHRITSVID-SDMVLLLSHG-IIEEYDSPTKLLEN 1279
++I + ++++ I + H + + + G ++ S ++LLE+
Sbjct: 164 RHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 1e-31
Identities = 59/236 (25%), Positives = 100/236 (42%), Gaps = 40/236 (16%)
Query: 614 ETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKIS 673
A+ + + F + + N + +N + G +AV G G GKS+LL +LG I
Sbjct: 2 NKALSVENLGFYYQ--AENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQ 59
Query: 674 GTLKLCGTKAYVAQSPWIQSG-NIEDNILFG-----------KPMDREKYDRVLEACSLK 721
G +++ + +V Q ++ D +L G K D + + L+
Sbjct: 60 GKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDY---- 115
Query: 722 KDLEILSFGDQTVIGERGIN-LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHL 780
L + R LSGGQ+Q I IARA+ + + L D+P SA+D
Sbjct: 116 --LNLTHLAK------REFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLAN---- 163
Query: 781 FKEVLLGLLRS------KTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDILN 829
++++L LL TV++ THQ + A A+ L++ G+ +IL
Sbjct: 164 -QDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNFKF-GETRNILT 217
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 93.4 bits (233), Expect = 4e-21
Identities = 52/225 (23%), Positives = 90/225 (40%), Gaps = 42/225 (18%)
Query: 1059 NLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGI 1118
NL Y + + L G ++G+ G GKSTL+ L I P G+I
Sbjct: 9 NLGFYY-QAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI----- 62
Query: 1119 NISSIGLHDLRSRLSIIPQDPTM-FEGTVRN----------NLDPLEEYKDEEI-WEALD 1166
++ + +PQ + F +V + N + D ++ +ALD
Sbjct: 63 --------EVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALD 114
Query: 1167 KCQLGDEVRNKEGKLDSR-VTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTA 1225
L L R T S GQRQL+ + R + + K+++LDE T+++D A
Sbjct: 115 YLNLTH--------LAKREFTS----LSGGQRQLILIARAIASECKLILLDEPTSALDLA 162
Query: 1226 TDNLIQQTLRQ--HFSDCTVITIAHRITSVID-SDMVLLLSHGII 1267
+++ L + TV+ H+ V+ ++ LLL+
Sbjct: 163 NQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNF 207
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 3e-29
Identities = 58/252 (23%), Positives = 106/252 (42%), Gaps = 31/252 (12%)
Query: 1059 NLQVRYAPHLPL---VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVI 1115
N+ + PL L ++ G + G TGSGKSTL+Q + ++EPT+G+++
Sbjct: 7 NVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLY 66
Query: 1116 DGINISSIGLHDLRSRLSIIPQDPT--MFEGTVRN-------NLDPLEEYKDEEIWEALD 1166
DG +++R + I Q P F V + N P + + +A++
Sbjct: 67 DGERKK---GYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRD-PVPLVKKAME 122
Query: 1167 KCQL-GDEVRNKE-GKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDT 1224
L D +++ L S G+++ V + V++ + +L+LDE +D
Sbjct: 123 FVGLDFDSFKDRVPFFL-----------SGGEKRRVAIASVIVHEPDILILDEPLVGLDR 171
Query: 1225 ATDNLIQQTLRQ-HFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENKSS 1282
+ + + + TVI I+H I +VI+ D V++L G + + LE
Sbjct: 172 EGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYDP 231
Query: 1283 SFAQLVAEYTQR 1294
F +R
Sbjct: 232 RFFTSKMLVMRR 243
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 99 bits (250), Expect = 2e-23
Identities = 58/236 (24%), Positives = 104/236 (44%), Gaps = 32/236 (13%)
Query: 616 AIEIVDGNFAWD--ISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKIS 673
IE+V+ + + L +++L + G + V G GSGKS+LL + G + S
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS 61
Query: 674 GTLKLCGTKA----------YVAQSPWIQ--SGNIEDNILFGKPM----DREKYDRVLEA 717
G + G + Q P Q + + D + F DR+ V +A
Sbjct: 62 GDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFA-VKNFYPDRDPVPLVKKA 120
Query: 718 CSLKK-DLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHT 776
++ L+ SF D+ LSGG+K+R+ IA + + DI + D+P +D
Sbjct: 121 --MEFVGLDFDSFKDRVP-----FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREG 173
Query: 777 GSHLFKEVLLGLLRS--KTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDILN 829
+ L + ++ ++ KTVI ++H +E + D ++V++ GK G + L
Sbjct: 174 KTDLLR--IVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLE 227
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 4e-26
Identities = 66/245 (26%), Positives = 107/245 (43%), Gaps = 36/245 (14%)
Query: 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIV 1114
+ + L Y+ L+G+ G T I+G G GKSTL Q I++P++G I+
Sbjct: 8 LKVEELNYNYSDGTH-ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRIL 66
Query: 1115 IDGINI--SSIGLHDLRSRLSIIPQDPT--MFEGTVRN-------NLDPLEEYKDEEIW- 1162
D I S G+ LR + I+ QDP +F +V N+ ++EI
Sbjct: 67 FDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMK----LPEDEIRK 122
Query: 1163 ---EALDKCQLGDEVRNKE-GKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEA 1218
AL + + + +++K L S GQ++ V + VL+ + KVL+LDE
Sbjct: 123 RVDNALKRTGI-EHLKDKPTHCL-----------SFGQKKRVAIAGVLVMEPKVLILDEP 170
Query: 1219 TASVDTATDNLIQQTLR--QHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTK 1275
TA +D + I + L Q T+I H I V D V ++ G + +P +
Sbjct: 171 TAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKE 230
Query: 1276 LLENK 1280
+ K
Sbjct: 231 VFAEK 235
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 99 bits (250), Expect = 4e-23
Identities = 55/241 (22%), Positives = 99/241 (41%), Gaps = 37/241 (15%)
Query: 613 SETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKI 672
+ +++ + N+ + S L+ IN+ + G A+ G G GKS+L G +
Sbjct: 4 EDYILKVEELNYNY--SDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS 61
Query: 673 SGTLKLCGTKA---------------YVAQSPWIQ--SGNIEDNILFGKPM-----DREK 710
SG + V Q P Q S ++ ++ FG + + E
Sbjct: 62 SGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFG-AVNMKLPEDEI 120
Query: 711 YDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFS 770
RV A K I D+ LS GQK+R+ IA L + + + D+P +
Sbjct: 121 RKRVDNAL---KRTGIEHLKDKPT-----HCLSFGQKKRVAIAGVLVMEPKVLILDEPTA 172
Query: 771 AVDAHTGSHLFKEVLLGLLRS--KTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDI 827
+D G ++L+ + + T+I TH ++ +P D + VMK+G++ G ++
Sbjct: 173 GLDPM-GVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEV 231
Query: 828 L 828
Sbjct: 232 F 232
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 1e-24
Identities = 59/247 (23%), Positives = 100/247 (40%), Gaps = 32/247 (12%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSG 694
L ++ G + + G G GK++ + + G G ++ T AY Q
Sbjct: 372 LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQY---IKA 428
Query: 695 NIEDNI--LFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQI 752
E + L K +D K + L K L I+ D+ V +LSGG+ QR+ I
Sbjct: 429 EYEGTVYELLSK-IDSSKLNSNFYKTELLKPLGIIDLYDRNVE-----DLSGGELQRVAI 482
Query: 753 ARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRS------KTVIYVTHQVEFLPA 806
A L +DADIYL D+P + +D + + +R KT + V H V +
Sbjct: 483 AATLLRDADIYLLDEPSAYLDVEQ-----RLAVSRAIRHLMEKNEKTALVVEHDVLMIDY 537
Query: 807 -ADLILVMKDGKITQAGKYNDILNSGTDFMVLVGAHQQALSALD-SIEGGPVSERISMNK 864
+D ++V +G+ + G+ + + + L+++ + P S R NK
Sbjct: 538 VSDRLIVF-EGEPGRHGRALPPMG-------MREGMNRFLASVGITFRRDPDSGRPRANK 589
Query: 865 ENGGMDT 871
E D
Sbjct: 590 EGSVKDR 596
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 90.8 bits (226), Expect = 1e-18
Identities = 53/235 (22%), Positives = 91/235 (38%), Gaps = 45/235 (19%)
Query: 616 AIEIVD--GNFAWDIS---SNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVP 670
AI IV+ D N + V GM V + G G+GK++ + + G++
Sbjct: 83 AISIVNLPEQLDEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLI 142
Query: 671 ------KISGTLKLCG-----TKAYVAQSPWIQSGNIEDN-----------ILFGKPMD- 707
S + + Y + +++G I + GK +
Sbjct: 143 PNLCEDNDSWDNVIRAFRGNELQNYFER---LKNGEIRPVVKPQYVDLLPKAVKGKVREL 199
Query: 708 ---REKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYL 764
++ + E K+LE+ + D+ + LSGG+ QR+ IA AL + A Y
Sbjct: 200 LKKVDEVGKFEEVV---KELELENVLDREL-----HQLSGGELQRVAIAAALLRKAHFYF 251
Query: 765 FDDPFSAVDAHTGSHLFKEVLLGLLRS-KTVIYVTHQVEFLPA-ADLILVMKDGK 817
FD+P S +D + V+ L K V+ V H + L +D+I V+
Sbjct: 252 FDEPSSYLDIRQRLKV-ARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEP 305
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 5e-16
Identities = 44/207 (21%), Positives = 77/207 (37%), Gaps = 44/207 (21%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS 1130
L G GIVG G GK+T ++ L + EPT G++ D
Sbjct: 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDL------------- 417
Query: 1131 RLSIIPQDPTM---FEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNK---EGKLDSR 1184
++ + + +EGTV E + L+ E+ D
Sbjct: 418 --TVAYKPQYIKAEYEGTVY-------ELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRN 468
Query: 1185 VTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVD----TATDNLIQQTLRQHFSD 1240
V + S G+ Q V + LL+ + + +LDE +A +D A I+ + ++ +
Sbjct: 469 VED----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKN--E 522
Query: 1241 CTVITIAHRITSVIDSDMVLLLSHGII 1267
T + + H D M+ +S +I
Sbjct: 523 KTALVVEH------DVLMIDYVSDRLI 543
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 3e-14
Identities = 49/233 (21%), Positives = 95/233 (40%), Gaps = 40/233 (17%)
Query: 1055 VDILNLQVRYAPHL-------PLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVE 1107
+ I+NL + VL L GM GIVG G+GK+T ++ L +
Sbjct: 84 ISIVNLPEQLDEDCVHRYGVNAFVLYRL-PIVKDGMVVGIVGPNGTGKTTAVKILAGQLI 142
Query: 1108 P------TAGEIVIDGINISSIGLHDLRSR---LSIIPQ------DPTMFEGTVRNNLDP 1152
P + + VI + + + R + + + + P +G VR L
Sbjct: 143 PNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKK 202
Query: 1153 LEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKV 1212
++E + E + + +L E LD + + S G+ Q V + LL+K+
Sbjct: 203 VDEV--GKFEEVVKELEL-------ENVLDRELHQ----LSGGELQRVAIAAALLRKAHF 249
Query: 1213 LVLDEATASVDTATDNLIQQTLRQ-HFSDCTVITIAHRITSVID--SDMVLLL 1262
DE ++ +D + + +R+ V+ + H + +V+D SD++ ++
Sbjct: 250 YFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDL-AVLDYLSDVIHVV 301
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 4e-23
Identities = 54/252 (21%), Positives = 93/252 (36%), Gaps = 36/252 (14%)
Query: 631 NNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPW 690
+ L + + + G G+GK++L+ + G + G + Q
Sbjct: 364 GDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIA 423
Query: 691 IQSGNIEDNILFGKP-----MDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGG 745
+ LF K ++ + V+ K L I DQ V +LSGG
Sbjct: 424 PKFPGT-VRQLFFKKIRGQFLNPQFQTDVV------KPLRIDDIIDQEVQ-----HLSGG 471
Query: 746 QKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRS------KTVIYVTH 799
+ QR+ I AL ADIYL D+P + +D+ + + ++R KT V H
Sbjct: 472 ELQRVAIVLALGIPADIYLIDEPSAYLDSEQ-----RIICSKVIRRFILHNKKTAFIVEH 526
Query: 800 QVEFLPA-ADLILVMKDGKITQAGKYNDILNSGTDFMVLVGAHQQALSALDSIEGGPVSE 858
AD ++V + A ++ +L G ++ + + P S
Sbjct: 527 DFIMATYLADKVIVFEGIPSKNA-------HARAPESLLTGCNRFLKNLNVTFRRDPNSF 579
Query: 859 RISMNKENGGMD 870
R +NK + MD
Sbjct: 580 RPRINKLDSQMD 591
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 6e-22
Identities = 53/262 (20%), Positives = 91/262 (34%), Gaps = 51/262 (19%)
Query: 614 ETAIEIVD--GNFAWDIS---SNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGE 668
AI+I++ N ++ S N G + + GT G GKS+ L + G+
Sbjct: 67 FDAIQIINLPTNLEAHVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGK 126
Query: 669 VPKISGTLKLCGTK------------------------------AYVAQSPWIQSGNIED 698
G YV P G ++
Sbjct: 127 QKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQK 186
Query: 699 NILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQ 758
K + + V K L++ + + + LSGG+ QR I + Q
Sbjct: 187 VGELLKLRMEKSPEDVKRYI---KILQLENVLKRDIE-----KLSGGELQRFAIGMSCVQ 238
Query: 759 DADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRS-KTVIYVTHQVEFLPA-ADLILVMKD- 815
+AD+Y+FD+P S +D + +++ LL K VI V H + L +D + ++
Sbjct: 239 EADVYMFDEPSSYLDVKQRLNA-AQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGV 297
Query: 816 ----GKITQAGKYNDILNSGTD 833
G +T + +N D
Sbjct: 298 PSVYGVVTLPASVREGINIFLD 319
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 87.0 bits (216), Expect = 1e-17
Identities = 38/212 (17%), Positives = 79/212 (37%), Gaps = 38/212 (17%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS 1130
VL F ++G G+GK+TLI+ L ++P G+ + N+S
Sbjct: 367 VLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKL-NVSM-----KPQ 420
Query: 1131 RLSIIPQDPT--MFEGTVRNNLDPLEEYKDEEIW-EALDKCQLGDEVRNKEGKLDSRVTE 1187
+++ +F +R ++ + + + + ++ + +D V
Sbjct: 421 KIAPKFPGTVRQLFFKKIR------GQFLNPQFQTDVVKPLRI-------DDIIDQEVQH 467
Query: 1188 NGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVD----TATDNLIQQTLRQHFSDCTV 1243
S G+ Q V + L + + ++DE +A +D +I++ H + T
Sbjct: 468 ----LSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRR-FILH-NKKTA 521
Query: 1244 ITIAHRITSVIDSDMVLLLSHGIIEEYDSPTK 1275
+ H D M L+ +I P+K
Sbjct: 522 FIVEH------DFIMATYLADKVIVFEGIPSK 547
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 72.0 bits (177), Expect = 7e-13
Identities = 42/211 (19%), Positives = 77/211 (36%), Gaps = 35/211 (16%)
Query: 1082 GMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEI-----------VIDGINISSIGLHDLRS 1130
G G+VG G GKST ++ L +P G G + + L
Sbjct: 103 GQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLED 162
Query: 1131 RLSIIPQD------PTMFEGTVRNNLDPLEEYKDE---EIWEALDKCQLGDEVRNKEGKL 1181
+ I + P +G V+ + L+ ++ ++ + QL E L
Sbjct: 163 DIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQL-------ENVL 215
Query: 1182 DSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQ-HFSD 1240
+ + S G+ Q +G ++++ V + DE ++ +D Q +R
Sbjct: 216 KRDIEK----LSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPT 271
Query: 1241 CTVITIAHRITSVID--SDMVLLLSHGIIEE 1269
VI + H + SV+D SD V ++
Sbjct: 272 KYVICVEHDL-SVLDYLSDFVCIIYGVPSVY 301
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 1e-22
Identities = 51/208 (24%), Positives = 89/208 (42%), Gaps = 24/208 (11%)
Query: 631 NNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPW 690
+ L ++ G + + G G GK++ + + G G ++ T AY + +
Sbjct: 298 GSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAY--KPQY 355
Query: 691 IQSGNIEDNI--LFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQ 748
I + E + L K +D K + L K L I+ D+ V LSGG+ Q
Sbjct: 356 I-KADYEGTVYELLSK-IDASKLNSNFYKTELLKPLGIIDLYDREVN-----ELSGGELQ 408
Query: 749 RIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRS------KTVIYVTHQVE 802
R+ IA L +DADIYL D+P + +D + + +R KT + V H V
Sbjct: 409 RVAIAATLLRDADIYLLDEPSAYLDVEQ-----RLAVSRAIRHLMEKNEKTALVVEHDVL 463
Query: 803 FLPA-ADLILVMKDGKITQAGKYNDILN 829
+ +D ++V +G+ + G+ +
Sbjct: 464 MIDYVSDRLMVF-EGEPGKYGRALPPMG 490
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 85.4 bits (212), Expect = 3e-17
Identities = 49/254 (19%), Positives = 93/254 (36%), Gaps = 52/254 (20%)
Query: 601 QSDVVEKHPRGSSETAIEIV-----DGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVG 655
S H G + + + N L + + V GM V + G G
Sbjct: 3 SSHHHHHHSSG----LVPRSHMEQLEEDCVHRYGVNAFVLYRLPV-VKEGMVVGIVGPNG 57
Query: 656 SGKSSLLSCILGEVP------KISGTLKLCGTK-------------AYVAQSPWIQSGNI 696
+GKS+ + + G++ S + + + Q ++
Sbjct: 58 TGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDL 117
Query: 697 EDNILFGKPMD----REKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQI 752
+ GK ++ ++ ++ E K LE+ + ++ + +LSGG+ QR+ I
Sbjct: 118 IPKAVKGKVIELLKKADETGKLEEVV---KALELENVLEREIQ-----HLSGGELQRVAI 169
Query: 753 ARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRS-----KTVIYVTHQVEFLPA- 806
A AL ++A Y FD+P S +D + +R K+V+ V H + L
Sbjct: 170 AAALLRNATFYFFDEPSSYLDIRQ-----RLNAARAIRRLSEEGKSVLVVEHDLAVLDYL 224
Query: 807 ADLILVMKDGKITQ 820
+D+I V+
Sbjct: 225 SDIIHVVYGEPGVY 238
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 80.4 bits (199), Expect = 1e-15
Identities = 46/243 (18%), Positives = 85/243 (34%), Gaps = 47/243 (19%)
Query: 1035 EPPLVIEESRPDCSWPTHGEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSG 1094
+ ++ V L Y L G GIVG G G
Sbjct: 268 PYEIKFTKTGERVEIERETLVTYPRLVKDYGSF---RLEVEPGEIKKGEVIGIVGPNGIG 324
Query: 1095 KSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDPTM---FEGTVRNNL- 1150
K+T ++ L + EPT G+I D ++ + + +EGTV L
Sbjct: 325 KTTFVKMLAGVEEPTEGKIEWDL---------------TVAYKPQYIKADYEGTVYELLS 369
Query: 1151 DPLEEYKDEEIW--EALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLK 1208
+ + E L + ++ ++E S G+ Q V + LL+
Sbjct: 370 KIDASKLNSNFYKTELLKPLGI-IDLYDREVN----------ELSGGELQRVAIAATLLR 418
Query: 1209 KSKVLVLDEATASVD----TATDNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSH 1264
+ + +LDE +A +D A I+ + ++ + T + + H D M+ +S
Sbjct: 419 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKN--EKTALVVEH------DVLMIDYVSD 470
Query: 1265 GII 1267
++
Sbjct: 471 RLM 473
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 76.9 bits (190), Expect = 2e-14
Identities = 49/244 (20%), Positives = 93/244 (38%), Gaps = 45/244 (18%)
Query: 1053 GEVDILNLQ-------VRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRI 1105
G V +++ RY + VL L GM GIVG G+GKST ++ L
Sbjct: 13 GLVPRSHMEQLEEDCVHRYGVN-AFVLYRL-PVVKEGMVVGIVGPNGTGKSTAVKILAGQ 70
Query: 1106 VEP------TAGEIVIDGINISSIGLHDLRSR---LSIIPQ------DPTMFEGTVRNNL 1150
+ P + + VI + + + + + + + + P +G V L
Sbjct: 71 LIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELL 130
Query: 1151 DPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKS 1210
+E E E + +L E L+ + S G+ Q V + LL+ +
Sbjct: 131 KKADETGKLE--EVVKALEL-------ENVLEREIQH----LSGGELQRVAIAAALLRNA 177
Query: 1211 KVLVLDEATASVD-TATDNLIQ--QTLRQHFSDCTVITIAHRITSVID--SDMVLLLSHG 1265
DE ++ +D N + + L + +V+ + H + +V+D SD++ ++
Sbjct: 178 TFYFFDEPSSYLDIRQRLNAARAIRRLSEE--GKSVLVVEHDL-AVLDYLSDIIHVVYGE 234
Query: 1266 IIEE 1269
Sbjct: 235 PGVY 238
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 96.8 bits (242), Expect = 1e-22
Identities = 39/189 (20%), Positives = 83/189 (43%), Gaps = 26/189 (13%)
Query: 1086 GIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDPTMFEG- 1144
G G GK+TL++T+ ++P GEI+ +G+ I+ + + ++ +P++ +
Sbjct: 39 NFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKV-----KGKIFFLPEEIIVPRKI 93
Query: 1145 TVRNNLDPLEEYKD-----EEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQL 1199
+V + L + EI +AL+ ++ D ++ K G+L S G +
Sbjct: 94 SVEDYLKAVASLYGVKVNKNEIMDALESVEVLD-LKKKLGEL-----------SQGTIRR 141
Query: 1200 VCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSD-CTVITIAHRITSVIDSDM 1258
V L LL +++ VLD+ ++D + + + +++ + + VI + S D
Sbjct: 142 VQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDV-- 199
Query: 1259 VLLLSHGII 1267
L
Sbjct: 200 NENLHKYST 208
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 85.3 bits (212), Expect = 1e-18
Identities = 51/239 (21%), Positives = 88/239 (36%), Gaps = 50/239 (20%)
Query: 608 HPRGSSETAIEIVD-----GNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLL 662
H + +EI D L I + + G V G G GK++LL
Sbjct: 2 HHHHHHGSKLEIRDLSVGYDKPV---------LERITMTIEKGNVVNFHGPNGIGKTTLL 52
Query: 663 SCILGEVPKISGTLKLCG---TKA-----YVAQSPWIQSG-NIEDNILF-----GKPMDR 708
I + + G + G TK ++ + + ++ED + G +++
Sbjct: 53 KTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNK 112
Query: 709 EKYDRVLEACSL---KKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLF 765
+ LE+ + KK L LS G +R+Q+A L +A+IY+
Sbjct: 113 NEIMDALESVEVLDLKKKLG---------------ELSQGTIRRVQLASTLLVNAEIYVL 157
Query: 766 DDPFSAVDAHTGSHLFKEVLLGLLRSK-TVIYVTHQVEFLPAADLILVMKDGKITQAGK 823
DDP A+D + + +L +L+ K VI + E L D+ + K
Sbjct: 158 DDPVVAIDEDSKHK-VLKSILEILKEKGIVIISSR--EELSYCDVNENLHKYSTKIDKK 213
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 1e-22
Identities = 40/214 (18%), Positives = 79/214 (36%), Gaps = 36/214 (16%)
Query: 632 NPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKA-----YVA 686
+ L N + G + + G G GK++ ++GE+ G++ +
Sbjct: 281 DFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIF 340
Query: 687 QSPWIQSGN----IEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINL 742
+ G +E+ ++ V K L + + V +L
Sbjct: 341 PNY---DGTVQQYLENASKDALSTSSWFFEEVT------KRLNLHRLLESNVN-----DL 386
Query: 743 SGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRS------KTVIY 796
SGG+ Q++ IA L ++AD+Y+ D P S +D + ++ ++
Sbjct: 387 SGGELQKLYIAATLAKEADLYVLDQPSSYLDVEE-----RYIVAKAIKRVTRERKAVTFI 441
Query: 797 VTHQVEFLPA-ADLILVMKDGKITQAGKYNDILN 829
+ H + AD I+V K G+ +AG +
Sbjct: 442 IDHDLSIHDYIADRIIVFK-GEPEKAGLATSPVT 474
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 99.7 bits (249), Expect = 1e-21
Identities = 46/208 (22%), Positives = 81/208 (38%), Gaps = 26/208 (12%)
Query: 635 LRDINLKVFH-GMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK----------- 682
+ L + V G G GK+++L + GE+ G K
Sbjct: 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKE 73
Query: 683 -AYVAQSPW-------IQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTV 734
+ + + +E F K E ++ E + E+L + T
Sbjct: 74 IYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELL---NMTN 130
Query: 735 IGERGI-NLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKT 793
+ + LSGG QR+ +A +L ++AD+Y+FD P S +D ++ + + LL++K
Sbjct: 131 LWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNM-AKAIRELLKNKY 189
Query: 794 VIYVTHQVEFL-PAADLILVMKDGKITQ 820
VI V H + L DLI ++
Sbjct: 190 VIVVDHDLIVLDYLTDLIHIIYGESSVY 217
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 87.0 bits (216), Expect = 1e-17
Identities = 43/251 (17%), Positives = 88/251 (35%), Gaps = 38/251 (15%)
Query: 1034 SEPPLVIEESRPDCSWPTHGEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGS 1093
++ E S D S ++ + + L G GI+G G
Sbjct: 249 EIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDF---QLVVDNGEAKEGEIIGILGPNGI 305
Query: 1094 GKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNL-DP 1152
GK+T + L + G + + +S + I + +GTV+ L +
Sbjct: 306 GKTTFARILVGEITADEGSVTPEKQILS--------YKPQRIFPNY---DGTVQQYLENA 354
Query: 1153 LEEYKDEEIW---EALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKK 1209
++ W E + L L+S V + S G+ Q + + L K+
Sbjct: 355 SKDALSTSSWFFEEVTKRLNL-------HRLLESNVND----LSGGELQKLYIAATLAKE 403
Query: 1210 SKVLVLDEATASVD----TATDNLIQQTLRQHFSDCTVITIAHRITSVID--SDMVLLLS 1263
+ + VLD+ ++ +D I++ R+ I H + S+ D +D +++
Sbjct: 404 ADLYVLDQPSSYLDVEERYIVAKAIKRVTRER--KAVTFIIDHDL-SIHDYIADRIIVFK 460
Query: 1264 HGIIEEYDSPT 1274
+ + +
Sbjct: 461 GEPEKAGLATS 471
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 1e-12
Identities = 32/209 (15%), Positives = 76/209 (36%), Gaps = 37/209 (17%)
Query: 1082 GMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLR-SRLSIIPQDP- 1139
G++G+ G GK+T+++ L + P G+ + L R + ++
Sbjct: 25 NTILGVLGKNGVGKTTVLKILAGEIIPNFGDP--NSKVGKDEVLKRFRGKEIYNYFKELY 82
Query: 1140 -----------------TMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLD 1182
+GTV L ++E ++ E + + +
Sbjct: 83 SNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKD--EVKELLNM-------TNLWN 133
Query: 1183 SRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCT 1242
S G Q + + LL+++ V + D+ ++ +D + + +R+ +
Sbjct: 134 KDANI----LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKY 189
Query: 1243 VITIAHRITSVID--SDMVLLLSHGIIEE 1269
VI + H + V+D +D++ ++
Sbjct: 190 VIVVDHDL-IVLDYLTDLIHIIYGESSVY 217
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 96.9 bits (242), Expect = 2e-21
Identities = 64/214 (29%), Positives = 103/214 (48%), Gaps = 38/214 (17%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTLKLCGTKAYVAQSPWI-- 691
L DI+L + G + + G G GK++LL C+ G E P SG + L G K +++ +
Sbjct: 20 LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD-SGEISLSG-KTIFSKNTNLPV 77
Query: 692 ---------QSG------NIEDNILFGKPMDR----EKYDRVLEACSLKKDLEILSFGDQ 732
Q G + NI +G + ++ R+ LE+ +
Sbjct: 78 RERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAM------LELTGISEL 131
Query: 733 TVIGERGIN-LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRS 791
R + LSGGQ+QR +ARAL D ++ L D+PFSA+D + ++ ++ LR+
Sbjct: 132 ---AGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIRED-MIAALRA 187
Query: 792 --KTVIYVTH-QVEFLPAADLILVMKDGKITQAG 822
K+ ++V+H + E L AD I VMK G+I Q
Sbjct: 188 NGKSAVFVSHDREEALQYADRIAVMKQGRILQTA 221
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 53.3 bits (129), Expect = 2e-07
Identities = 54/263 (20%), Positives = 101/263 (38%), Gaps = 57/263 (21%)
Query: 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIV----EPTA 1110
+ I +L + VL ++ + G I+G +G GK+TL+ R + +P +
Sbjct: 5 LHIGHLSKSFQNTP--VLNDISLSLDPGEILFIIGASGCGKTTLL----RCLAGFEQPDS 58
Query: 1111 GEIVIDGINISSIGLH---DLRSRLSIIPQD----PTMFEGTVRNN----LDPLEEYKDE 1159
GEI + G I S + R RL + Q+ P + TV N L + +
Sbjct: 59 GEISLSGKTIFSKNTNLPVRER-RLGYLVQEGVLFPHL---TVYRNIAYGLGNGKGRTAQ 114
Query: 1160 E---IWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLD 1216
E I L+ + + +L S GQ+Q L R L ++++LD
Sbjct: 115 ERQRIEAMLELTGISELAGRYPHEL-----------SGGQQQRAALARALAPDPELILLD 163
Query: 1217 EATASVDTATDNLIQQTLR--QHFSDCTVITIAHRITSVID-------SDMVLLLSHGII 1267
E +++D I++ + + + + ++H D +D + ++ G I
Sbjct: 164 EPFSALDEQLRRQIREDMIAALRANGKSAVFVSH------DREEALQYADRIAVMKQGRI 217
Query: 1268 EEYDSPTKLLENKSSSFAQLVAE 1290
+ SP +L + A
Sbjct: 218 LQTASPHELYRQPADLD---AAL 237
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 96.1 bits (240), Expect = 3e-21
Identities = 77/294 (26%), Positives = 122/294 (41%), Gaps = 69/294 (23%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTLKLCGTK----------- 682
L +++LKV G + G G+GK+ L I G VP SG + L G
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD-SGRILLDGKDVTDLSPEKHDI 74
Query: 683 AYVAQS----PWIQSGNIEDNILFGKPMDR-EKYDRVLEACSLKKDLEILSFGDQTVIGE 737
A+V Q+ P + N++ N+ FG M + + RVL+ L+I D
Sbjct: 75 AFVYQNYSLFPHM---NVKKNLEFGMRMKKIKDPKRVLDTARD---LKIEHLLD------ 122
Query: 738 RGIN-LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL-----LGLLRS 791
R LSGG++QR+ +ARAL + I L D+P SA+D T + + + L
Sbjct: 123 RNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKL--- 179
Query: 792 KTVIYVTH-QVEFLPAADLILVMKDGKITQAGK----YN-------------------DI 827
TV+++TH Q E AD I V+ DGK+ Q GK + +
Sbjct: 180 -TVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRVASFVGFENVLKGRV 238
Query: 828 LNSGTDFMVLVGAHQQALSALDSIEGGPVS-----ERISMNKENGGMDTTNGVT 876
+++ + + +A D G V E I+++K + N +
Sbjct: 239 ISAEQGLLRIRVGEVVIDAAGDMEVGDQVYAFLRPENIALSKSSTQSSIRNSLQ 292
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 2e-07
Identities = 45/222 (20%), Positives = 91/222 (40%), Gaps = 44/222 (19%)
Query: 1087 IVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSR-LSIIPQD----PTM 1141
I+G TG+GK+ ++ + P +G I++DG +++ + ++ + Q+ P M
Sbjct: 31 ILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEK---HDIAFVYQNYSLFPHM 87
Query: 1142 FEGTVRNNLD-PLEEYK---DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQR 1197
V+ NL+ + K + + + ++ + L S G++
Sbjct: 88 ---NVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTL-----------SGGEQ 133
Query: 1198 QLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLR--QHFSDCTVITIAHRITSVID 1255
Q V L R L+ K+L+LDE +++D T ++ L + TV+ I H D
Sbjct: 134 QRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITH------D 187
Query: 1256 -------SDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLVAE 1290
+D + ++ G + + P ++ E VA
Sbjct: 188 QTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR---VAS 226
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 91.8 bits (229), Expect = 1e-20
Identities = 57/205 (27%), Positives = 91/205 (44%), Gaps = 42/205 (20%)
Query: 655 GSGKSSLLSCILG-EVPKISGTLKLCG-----TKAY------VAQS----PWIQSGNIED 698
G+GKS L I G P G ++L G V Q P + ++
Sbjct: 34 GAGKSVFLELIAGIVKPD-RGEVRLNGADITPLPPERRGIGFVPQDYALFPHL---SVYR 89
Query: 699 NILFG-KPMDR-EKYDRVLEACSLKKDLEILSFGDQTVIGERGIN-LSGGQKQRIQIARA 755
NI +G + ++R E+ RV E E L + +R LSGG++QR+ +ARA
Sbjct: 90 NIAYGLRNVERVERDRRVREM------AEKLGIAH---LLDRKPARLSGGERQRVALARA 140
Query: 756 LYQDADIYLFDDPFSAVDAHTGSHLFKEVL-----LGLLRSKTVIYVTH-QVEFLPAADL 809
L + L D+P SAVD T L +E+ + +++VTH +E AD
Sbjct: 141 LVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDV----PILHVTHDLIEAAMLADE 196
Query: 810 ILVMKDGKITQAGKYNDILNSGTDF 834
+ VM +G+I + GK ++ ++
Sbjct: 197 VAVMLNGRIVEKGKLKELFSAKNGE 221
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 63.3 bits (155), Expect = 5e-11
Identities = 54/214 (25%), Positives = 97/214 (45%), Gaps = 40/214 (18%)
Query: 1087 IVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQD----PTMF 1142
++G TG+GKS ++ + IV+P GE+ ++G +I+ + R + +PQD P +
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER-RG-IGFVPQDYALFPHL- 85
Query: 1143 EGTVRNNLD-PLEEYKDEEIW----EALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQR 1197
+V N+ L + E E +K + + K +L S G+R
Sbjct: 86 --SVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARL-----------SGGER 132
Query: 1198 QLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLR--QHFSDCTVITIAHRITSVID 1255
Q V L R L+ + ++L+LDE ++VD T ++ + LR Q D ++ + H D
Sbjct: 133 QRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTH------D 186
Query: 1256 -------SDMVLLLSHGIIEEYDSPTKLLENKSS 1282
+D V ++ +G I E +L K+
Sbjct: 187 LIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNG 220
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 90.7 bits (226), Expect = 3e-20
Identities = 45/223 (20%), Positives = 71/223 (31%), Gaps = 56/223 (25%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS 1130
L L+ G +VG G+GKSTL+ + + G I G + + L
Sbjct: 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLAL 73
Query: 1131 RLSIIPQDPTMFEG-TVRNNLDPLEEY--------KDEEI-WEALDKCQLGDEVRNKEGK 1180
+ + Q T V Y E+ + L D K
Sbjct: 74 HRAYLSQQQTPPFATPVW-------HYLTLHQHDKTRTELLNDVAGALALDD-------K 119
Query: 1181 LDSRVTENGENWSMGQRQLVCLGRVLL-------KKSKVLVLDEATASVDTA----TDNL 1229
L + S G+ Q V L V+L ++L+LDE S+D A D +
Sbjct: 120 LGRSTNQ----LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKI 175
Query: 1230 IQQTLRQHFSDCTVITIAHRITSVID-------SDMVLLLSHG 1265
+ +Q ++ +H D + LL G
Sbjct: 176 LSALSQQG---LAIVMSSH------DLNHTLRHAHRAWLLKGG 209
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 88.4 bits (220), Expect = 2e-19
Identities = 44/226 (19%), Positives = 88/226 (38%), Gaps = 52/226 (23%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------- 681
L ++ +V G + + G G+GKS+LL+ + G G+++ G
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG-KGSIQFAGQPLEAWSATKLALH 74
Query: 682 KAYVAQSPWIQSG-NIEDNILFGKP--MDREKYDRVLEACSLKKDLEILSFGDQTVIGER 738
+AY++Q + + + E + V A L+ R
Sbjct: 75 RAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL----ALDDKL--------GR 122
Query: 739 GIN-LSGGQKQRIQIARALYQD-------ADIYLFDDPFSAVD-AHTGSHLFKEVLLGLL 789
N LSGG+ QR+++A + Q + L D+P +++D A + L +L
Sbjct: 123 STNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQ------QSALDKIL 176
Query: 790 RS-----KTVIYVTHQVEFLPA--ADLILVMKDGKITQAGKYNDIL 828
+ ++ +H + A ++K GK+ +G+ ++L
Sbjct: 177 SALSQQGLAIVMSSHDLN-HTLRHAHRAWLLKGGKMLASGRREEVL 221
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 92.7 bits (231), Expect = 4e-20
Identities = 62/218 (28%), Positives = 97/218 (44%), Gaps = 40/218 (18%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTLKLCGTKAYVAQSPW--- 690
+R ++ ++ G V + G GSGK+++L I G E P G + + G + P
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT-KGDVWIGGKRV-TDLPPQKRN 88
Query: 691 ----IQS------GNIEDNILFG----KPMDREKYDRVLEACSLKKDLEILSFGDQTVIG 736
Q+ + DN+ FG + E RV E L +
Sbjct: 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVREL------LRFMRLES---YA 139
Query: 737 ERGIN-LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL-----LGLLR 790
R + LSGGQ+QR+ +ARAL + LFD+PF+A+D L V +G+
Sbjct: 140 NRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGV-- 197
Query: 791 SKTVIYVTH-QVEFLPAADLILVMKDGKITQAGKYNDI 827
T ++VTH Q E L AD +LV+ +G + Q G ++
Sbjct: 198 --TSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEV 233
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 3e-06
Identities = 63/264 (23%), Positives = 113/264 (42%), Gaps = 62/264 (23%)
Query: 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIV----EPTA 1110
++ + ++ Y +RG++ G G++G +GSGK+T++ R++ PT
Sbjct: 15 IEFVGVEKIYPGGAR-SVRGVSFQIREGEMVGLLGPSGSGKTTIL----RLIAGLERPTK 69
Query: 1111 GEIVIDGINISSIGLHDLRSRLSIIPQD----PTMFEGTVRNNLD-PLEEYK------DE 1159
G++ I G ++ + R + ++ Q+ M TV +N+ L E + D
Sbjct: 70 GDVWIGGKRVTDLPPQK-R-NVGLVFQNYALFQHM---TVYDNVSFGLREKRVPKDEMDA 124
Query: 1160 EIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEAT 1219
+ E L +L +L S GQ+Q V L R L + +VL+ DE
Sbjct: 125 RVRELLRFMRLESYANRFPHEL-----------SGGQQQRVALARALAPRPQVLLFDEPF 173
Query: 1220 ASVDTATDNLIQQTLRQHFSDCTVITIAHR---ITSVI---D-------SDMVLLLSHGI 1266
A++DT ++ +RQ H +TSV D +D VL+L G
Sbjct: 174 AAIDTQIRRELRTFVRQ----------VHDEMGVTSVFVTHDQEEALEVADRVLVLHEGN 223
Query: 1267 IEEYDSPTKLLENKSSSFAQLVAE 1290
+E++ +P ++ E + F VA
Sbjct: 224 VEQFGTPEEVYEKPGTLF---VAS 244
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 89.2 bits (222), Expect = 1e-19
Identities = 68/222 (30%), Positives = 100/222 (45%), Gaps = 38/222 (17%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCI-LGEVPKISGTLKLCGT------KAYVAQ 687
L+ IN+ + G V V G GSGKS+ L C+ L E G + + G
Sbjct: 40 LKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD-EGEIIIDGINLKAKDTNLNKV 98
Query: 688 SPWI----QSGN------IEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGE 737
+ Q N + +NI PM K+ R +A K +E+L D+ + +
Sbjct: 99 REEVGMVFQRFNLFPHMTVLNNITLA-PMKVRKWPRE-KA--EAKAMELL---DKVGLKD 151
Query: 738 RG----INLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL---LGLLR 790
+ +LSGGQ QR+ IARAL + I LFD+P SA+D + EVL L
Sbjct: 152 KAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDP----EMVGEVLSVMKQLAN 207
Query: 791 SK-TVIYVTHQVEFL-PAADLILVMKDGKITQAGKYNDILNS 830
T++ VTH++ F D +L M G I + GK D+ +
Sbjct: 208 EGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 6e-11
Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 28/167 (16%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIG--LHDL 1128
VL+G+ G ++G +GSGKST ++ L + + GEI+IDGIN+ + L+ +
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 1129 RSRLSIIPQD----PTMFEGTVRNN--LDPLEEYK------DEEIWEALDKCQLGDEVRN 1176
R + ++ Q P M TV NN L P++ K + + E LDK L D+
Sbjct: 99 REEVGMVFQRFNLFPHM---TVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHA 155
Query: 1177 KEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVD 1223
L S GQ Q V + R L + K+++ DE T+++D
Sbjct: 156 YPDSL-----------SGGQAQRVAIARALAMEPKIMLFDEPTSALD 191
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 87.6 bits (218), Expect = 4e-19
Identities = 48/234 (20%), Positives = 107/234 (45%), Gaps = 28/234 (11%)
Query: 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIV 1114
V + +L+ R +L+G++ G G++G G+GK+T ++ + +++P++G +
Sbjct: 16 VVVKDLRKRIGKKE--ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT 73
Query: 1115 IDGINISSIGLHDLRSRLSIIPQDPTMFEG-TVRNNLD--------PLEEYKDEEIWEAL 1165
+ G N+ H++R +S +P++ + L E + E + A
Sbjct: 74 VFGKNVVE-EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIE-EMVERAT 131
Query: 1166 DKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTA 1225
+ LG+ K+ RV +S G + + + R L+ ++ +LDE T+ +D
Sbjct: 132 EIAGLGE-------KIKDRV----STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVL 180
Query: 1226 TDNLIQQTLRQHFSD-CTVITIAHRITSVID--SDMVLLLSHGIIEEYDSPTKL 1276
+++ L+Q + T++ +H ++ D + L+ +G I E + +L
Sbjct: 181 NAREVRKILKQASQEGLTILVSSH-NMLEVEFLCDRIALIHNGTIVETGTVEEL 233
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 68.3 bits (168), Expect = 1e-12
Identities = 47/242 (19%), Positives = 87/242 (35%), Gaps = 55/242 (22%)
Query: 608 HPRGSSETAIEIVD-----GNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLL 662
H A+ + D G L+ I+ ++ G + G G+GK++ L
Sbjct: 7 HHHHHHMGAVVVKDLRKRIGKK--------EILKGISFEIEEGEIFGLIGPNGAGKTTTL 58
Query: 663 SCILGEVPKISGTLKLCGTKA------------YVAQSP---WIQSGNIEDNILF----- 702
I + SG + + G Y+ + G + + F
Sbjct: 59 RIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQG--IEYLRFVAGFY 116
Query: 703 --GKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDA 760
E +R E L + I +R S G +++ IARAL +
Sbjct: 117 ASSSSEIEEMVERATEIAGLGE-----------KIKDRVSTYSKGMVRKLLIARALMVNP 165
Query: 761 DIYLFDDPFSAVDAHTGSHLFKEVLLGLLRS-KTVIYVTH---QVEFLPAADLILVMKDG 816
+ + D+P S +D + +++L + T++ +H +VEFL D I ++ +G
Sbjct: 166 RLAILDEPTSGLDVLN-AREVRKILKQASQEGLTILVSSHNMLEVEFL--CDRIALIHNG 222
Query: 817 KI 818
I
Sbjct: 223 TI 224
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 5e-19
Identities = 56/232 (24%), Positives = 91/232 (39%), Gaps = 65/232 (28%)
Query: 631 NNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTLKLCGTK------- 682
L ++N+ + +G R + G G+GK++ + I G +VP +G L
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS-TGELYFDDRLVASNGKL 75
Query: 683 ---------AYVAQS----PWIQSGNIEDNILFG---KPMDREKYD-RVLEACSLKKDLE 725
V Q+ P + +NI F M +E+ RV E + L+
Sbjct: 76 IVPPEDRKIGMVFQTWALYPNL---TAFENIAFPLTNMKMSKEEIRKRVEEVAKI---LD 129
Query: 726 ILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL 785
I + LSG Q+QR+ +ARAL +D + L D+PFS +DA
Sbjct: 130 IHHVLNH-----FPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDA----------- 173
Query: 786 LGLLRSK--------------TVIYVTH-QVEFLPAADLILVMKDGKITQAG 822
+R T++ V+H + AD + V+ GK+ Q G
Sbjct: 174 --RMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVG 223
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 7e-08
Identities = 52/276 (18%), Positives = 91/276 (32%), Gaps = 97/276 (35%)
Query: 1070 LVLRGLTCTFPGGMKTGI---------------VGRTGSGKSTLIQTLFRIV----EPTA 1110
++++ ++ F G + +G +G+GK+T + RI+ P+
Sbjct: 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFM----RIIAGLDVPST 59
Query: 1111 GEIVIDGINISSIGLHDLRSRLSIIPQD-------------PTMFEGTVRNNLD-PLEEY 1156
GE+ D ++S G + P+D P + T N+ PL
Sbjct: 60 GELYFDDRLVASNGKLIVP------PEDRKIGMVFQTWALYPNL---TAFENIAFPLTNM 110
Query: 1157 K------DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKS 1210
K + + E + + + +L S Q+Q V L R L+K
Sbjct: 111 KMSKEEIRKRVEEVAKILDIHHVLNHFPREL-----------SGAQQQRVALARALVKDP 159
Query: 1211 KVLVLDE------ATASVDTATD-NLIQQTLRQHFSDCTVI----------TIAHRITSV 1253
+L+LDE A +Q L T++ IA R+
Sbjct: 160 SLLLLDEPFSNLDARMRDSARALVKEVQSRL-----GVTLLVVSHDPADIFAIADRV--G 212
Query: 1254 IDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLVA 1289
+ L G + + P L +N S VA
Sbjct: 213 V-------LVKGKLVQVGKPEDLYDNPVSIQ---VA 238
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 83.8 bits (208), Expect = 9e-18
Identities = 61/237 (25%), Positives = 107/237 (45%), Gaps = 56/237 (23%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCI-LGEVPKISGTLKLCGTKAYVAQSPWI-- 691
L+ ++L+ G +++ G+ GSGKS+ L CI E P G + + G + +
Sbjct: 22 LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS-EGAIIVNGQNINLVRDKDGQL 80
Query: 692 -------------------QSGN------IEDNILFGKPMDREKYDRVLEACSLKKDLEI 726
Q N + +N++ P+ + +A ++ L+
Sbjct: 81 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEA-PIQVLGLSKH-DA--RERALKY 136
Query: 727 LSFGDQTVIGERG-----INLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLF 781
L + I ER ++LSGGQ+QR+ IARAL + D+ LFD+P SA+D L
Sbjct: 137 L---AKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALD----PELV 189
Query: 782 KEVLLGLLRS-----KTVIYVTHQVEFLPA---ADLILVMKDGKITQAGKYNDILNS 830
EV L +++ KT++ VTH++ F A + ++ + GKI + G + +
Sbjct: 190 GEV-LRIMQQLAEEGKTMVVVTHEMGF--ARHVSSHVIFLHQGKIEEEGDPEQVFGN 243
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 3e-08
Identities = 52/195 (26%), Positives = 89/195 (45%), Gaps = 42/195 (21%)
Query: 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIV 1114
+ +++L RY H VL+G++ G I+G +GSGKST ++ + + +P+ G I+
Sbjct: 7 LHVIDLHKRYGGHE--VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAII 64
Query: 1115 IDGINISSIG-------------LHDLRSRLSIIPQD----PTMFEGTVRNN--LDPLE- 1154
++G NI+ + L LR+RL+++ Q M TV N P++
Sbjct: 65 VNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHM---TVLENVMEAPIQV 121
Query: 1155 --EYKDEEIWEA---LDKCQLGDEVRNKE-GKLDSRVTENGENWSMGQRQLVCLGRVLLK 1208
K + A L K + + + K L S GQ+Q V + R L
Sbjct: 122 LGLSKHDARERALKYLAKVGIDERAQGKYPVHL-----------SGGQQQRVSIARALAM 170
Query: 1209 KSKVLVLDEATASVD 1223
+ VL+ DE T+++D
Sbjct: 171 EPDVLLFDEPTSALD 185
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 85.3 bits (212), Expect = 1e-17
Identities = 71/227 (31%), Positives = 100/227 (44%), Gaps = 60/227 (26%)
Query: 631 NNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTLKLCGTK------- 682
N L +INLK+ G +A+ G GSGKS+LL I G P SG +
Sbjct: 15 NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT-SGKIYFDEKDVTELPPK 73
Query: 683 ----AYVAQS----PWIQSGNIEDNILFG---KPMDREKYD-RVLEACSLKKDLEILSFG 730
V Q+ P + + NI F + RE+ D +V E + L I
Sbjct: 74 DRNVGLVFQNWALYPHM---TVYKNIAFPLELRKAPREEIDKKVREVAKM---LHIDKLL 127
Query: 731 DQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLR 790
++ LSGGQ+QR+ IARAL ++ ++ L D+P S +DA LLR
Sbjct: 128 NR-----YPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDA-------------LLR 169
Query: 791 SK--------------TVIYVTH-QVEFLPAADLILVMKDGKITQAG 822
+ T +YVTH Q E L AD I V+++G+I Q G
Sbjct: 170 LEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVG 216
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 1e-04
Identities = 55/240 (22%), Positives = 94/240 (39%), Gaps = 79/240 (32%)
Query: 1087 IVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQD-------- 1138
++G +GSGKSTL+ T+ I +PT+G+I D +++ +L P+D
Sbjct: 34 LLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVT-----ELP------PKDRNVGLVFQ 82
Query: 1139 -----PTMFEGTVRNNLD-PLEEYK------DEEIWEALDKCQLGDEVRNKEGKLDSRVT 1186
P M TV N+ PLE K D+++ E + + +L
Sbjct: 83 NWALYPHM---TVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQL----- 134
Query: 1187 ENGENWSMGQRQLVCLGRVLLKKSKVLVLDE------ATASVDTATD-NLIQQTLRQHFS 1239
S GQ+Q V + R L+K+ +VL+LDE A ++ + +Q+ L
Sbjct: 135 ------SGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKEL----- 183
Query: 1240 DCTVI----------TIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLVA 1289
T + +A RI + + G I + +P ++ F V
Sbjct: 184 GITTVYVTHDQAEALAMADRI--AV-------IREGEILQVGTPDEVYYKPKYKF---VG 231
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 80.2 bits (199), Expect = 7e-17
Identities = 54/214 (25%), Positives = 90/214 (42%), Gaps = 42/214 (19%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILG--EVPKISGTLKLCGTKAYVAQSP--- 689
L+ I+L V G V++ G GSGKS+LL ILG + P G + L G + V +
Sbjct: 20 LKGISLSVKKGEFVSIIGASGSGKSTLLY-ILGLLDAPT-EGKVFLEGKE--VDYTNEKE 75
Query: 690 --WIQSGNI---------------EDNI----LFGKPMDREKYDRVLEACSLKKDLEILS 728
+++ + +N+ L +E +R L L
Sbjct: 76 LSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYL------LSELG 129
Query: 729 FGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL 788
GD+ + + LSGG++QR+ IARAL + + D+P +D+ + +
Sbjct: 130 LGDK--LSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMD--IFLK 185
Query: 789 LRS--KTVIYVTHQVEFLPAADLILVMKDGKITQ 820
+ +++ VTH+ E L MKDGK+
Sbjct: 186 INEGGTSIVMVTHERELAELTHRTLEMKDGKVVG 219
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 61.4 bits (150), Expect = 2e-10
Identities = 48/199 (24%), Positives = 86/199 (43%), Gaps = 40/199 (20%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIG---LHD 1127
+L+G++ + G I+G +GSGKSTL+ L + PT G++ ++G + L
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 1128 LRSRLSI---------IPQD--------PTMFEGTVRNNLDPLEEYKDEEIWEALDKCQL 1170
LR+R + IP+ P + G P +E K E L + L
Sbjct: 79 LRNR-KLGFVFQFHYLIPELTALENVIVPMLKMGK------PKKEAK-ERGEYLLSELGL 130
Query: 1171 GDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLI 1230
GD++ K +L S G++Q V + R L + +L DE T ++D+A +
Sbjct: 131 GDKLSRKPYEL-----------SGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRV 179
Query: 1231 QQTLRQ-HFSDCTVITIAH 1248
+ + +++ + H
Sbjct: 180 MDIFLKINEGGTSIVMVTH 198
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 79.9 bits (198), Expect = 1e-16
Identities = 63/221 (28%), Positives = 97/221 (43%), Gaps = 55/221 (24%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILG--EVPKISGTLKLCGTKA--------- 683
L+++NL + G V++ G GSGKS++L+ I+G + P G + + K
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLN-IIGCLDKPT-EGEVYIDNIKTNDLDDDELT 78
Query: 684 --------YVAQS-PWIQSGNIEDNILFGKPM---------DREKYDRVLEACSLKKDLE 725
+V Q I +N+ P+ E+ R LE L+
Sbjct: 79 KIRRDKIGFVFQQFNLIPLLTALENVEL--PLIFKYRGAMSGEERRKRALEC------LK 130
Query: 726 ILSFGDQTVIGERGIN-----LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGS-- 778
+ + ER N LSGGQ+QR+ IARAL + I L D P A+D+ TG
Sbjct: 131 MAE------LEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKI 184
Query: 779 -HLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKI 818
L K+ L KTV+ VTH + + I+ +KDG++
Sbjct: 185 MQLLKK--LNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 2e-07
Identities = 54/242 (22%), Positives = 95/242 (39%), Gaps = 58/242 (23%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIG---LHD 1127
L+ + G I+G +GSGKST++ + + +PT GE+ ID I + + L
Sbjct: 20 ALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTK 79
Query: 1128 LRSRLSI---------IPQD--------PTMFEGTVRNNLDPLEEYKDEEIWEALDKCQL 1170
+R I IP P +F+ EE + + E L +L
Sbjct: 80 IRRD-KIGFVFQQFNLIPLLTALENVELPLIFKYRGA---MSGEERR-KRALECLKMAEL 134
Query: 1171 GDEVRN-KEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNL 1229
+ N K +L S GQ+Q V + R L +++ D+ T ++D+ T
Sbjct: 135 EERFANHKPNQL-----------SGGQQQRVAIARALANNPPIILADQPTWALDSKTGEK 183
Query: 1230 IQQTLRQ-HFSD-CTVITI---------AHRITSVIDSDMVLLLSHGIIEEYDSPTKLLE 1278
I Q L++ + D TV+ + RI + D G +E + + +
Sbjct: 184 IMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKD---------GEVER-EEKLRGFD 233
Query: 1279 NK 1280
++
Sbjct: 234 DR 235
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 83.5 bits (206), Expect = 3e-16
Identities = 51/210 (24%), Positives = 83/210 (39%), Gaps = 38/210 (18%)
Query: 633 PTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK-AYVAQSPWI 691
L L++ R +CG G GKS+L+ I ++ G + YV
Sbjct: 449 ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANG--QVDGFPTQEECRTVYVEHDI-- 504
Query: 692 QSGNIEDNILFGKPMDREKYDRVLEACS-----LKKDLEILSFGDQTVIGERGI-NLSGG 745
G D D V E+ +K L F D+ + I LSGG
Sbjct: 505 ----------DGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMI--AMPISALSGG 552
Query: 746 QKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL---LRS--KTVIYVTHQ 800
K ++ +ARA+ ++ADI L D+P T +HL + L L + T I ++H
Sbjct: 553 WKMKLALARAVLRNADILLLDEP-------T-NHLDTVNVAWLVNYLNTCGITSITISHD 604
Query: 801 VEFL-PAADLILVMKDGKITQ-AGKYNDIL 828
FL + I+ + K+ + G + + +
Sbjct: 605 SVFLDNVCEYIINYEGLKLRKYKGNFTEFV 634
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 58.9 bits (142), Expect = 1e-08
Identities = 40/195 (20%), Positives = 68/195 (34%), Gaps = 28/195 (14%)
Query: 1056 DILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVI 1115
D+ N + A ++L + GI G G GKSTL++ I
Sbjct: 435 DLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMR-------------AI 481
Query: 1116 DGINISSIGLHDLRSRLSIIPQDPTMFEG--TVRNNLDPLEEYKDEEIWEALDKCQLGDE 1173
+ + R + D +V + + E I + L + DE
Sbjct: 482 ANGQVDGFPTQE-ECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDE 540
Query: 1174 VRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQT 1233
+ ++ S G + + L R +L+ + +L+LDE T +DT +
Sbjct: 541 ------MIAMPISA----LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNY 590
Query: 1234 LRQHFSDCTVITIAH 1248
L T ITI+H
Sbjct: 591 LNT--CGITSITISH 603
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 58.1 bits (140), Expect = 2e-08
Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 15/124 (12%)
Query: 708 REKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDD 767
R L +++ +L + V R LSGGQK ++ +A +Q + + D+
Sbjct: 868 ASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDE 927
Query: 768 PFSAVDAHTGSHLFKEVLLGL---LRS--KTVIYVTHQVEFLPA-ADLILVMKDGKITQ- 820
P T ++L ++ L L L+ VI +TH EF + + +KDG++T
Sbjct: 928 P-------T-NYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDGRMTPS 979
Query: 821 AGKY 824
+
Sbjct: 980 GHNW 983
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 51.2 bits (122), Expect = 2e-06
Identities = 31/183 (16%), Positives = 70/183 (38%), Gaps = 14/183 (7%)
Query: 633 PTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK---AYVAQSP 689
P + DIN + R+AV G G+GKS+L++ + GE+ SG + AY+ Q
Sbjct: 687 PQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYT-HENCRIAYIKQ-- 743
Query: 690 WIQSGNIEDNILFGKPMD--REKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQK 747
+ ++ L P + + ++ + ++ + ++ D + + I G
Sbjct: 744 --HAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNK--IFKIEGTP 799
Query: 748 QRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVI--YVTHQVEFLP 805
+RI + + + Y ++ F + ++ + + V + +
Sbjct: 800 RRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVA 859
Query: 806 AAD 808
D
Sbjct: 860 EVD 862
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 48.5 bits (115), Expect = 1e-05
Identities = 30/183 (16%), Positives = 60/183 (32%), Gaps = 3/183 (1%)
Query: 1059 NLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVI-DG 1117
N++ +Y + + + ++G G+GKSTLI L + PT+GE+ +
Sbjct: 676 NMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN 735
Query: 1118 INISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNK 1177
I+ I H S + + P+ + + E + + +++
Sbjct: 736 CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKI 795
Query: 1178 EGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQH 1237
EG + + C + SVD A + + L +
Sbjct: 796 EGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNA--WIPRGELVES 853
Query: 1238 FSD 1240
S
Sbjct: 854 HSK 856
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 80.3 bits (199), Expect = 4e-16
Identities = 58/228 (25%), Positives = 92/228 (40%), Gaps = 62/228 (27%)
Query: 631 NNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKIS-GTLKLCGTK------ 682
+ ++ +V G VA+ G G GK++ L + G K + G +
Sbjct: 15 KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIY--KPTSGEIYFDDVLVNDIPP 72
Query: 683 -----AYVAQS----PWIQSGNIEDNILFG---KPMDREKYD-RVLEACSLKKDLEILSF 729
V Q+ P + + +NI F + + +++ + RV+E L I +
Sbjct: 73 KYREVGMVFQNYALYPHM---TVFENIAFPLRARRISKDEVEKRVVEIARK---LLIDNL 126
Query: 730 GDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL 789
D+ + LSGGQ+QR+ +ARAL + + LFD+P S +DA L
Sbjct: 127 LDR-----KPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDA-------N------L 168
Query: 790 RSK--------------TVIYVTH-QVEFLPAADLILVMKDGKITQAG 822
R T +YVTH Q E + A I V GK+ Q G
Sbjct: 169 RMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYG 216
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 1e-15
Identities = 64/221 (28%), Positives = 96/221 (43%), Gaps = 48/221 (21%)
Query: 631 NNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILG--EVPKISGTLKLCGTK------ 682
N + +NL + G + + G G GK++ L I G E G +
Sbjct: 23 NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT--EGRIYFGDRDVTYLPP 80
Query: 683 -----AYVAQS----PWIQSGNIEDNILFG---KPMDREKYD-RVLEACSLKKDLEILSF 729
+ V QS P + + +NI F K +++ D RV A L L+I
Sbjct: 81 KDRNISMVFQSYAVWPHM---TVYENIAFPLKIKKFPKDEIDKRVRWAAEL---LQIEEL 134
Query: 730 GDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDA----HTGSHLFKEVL 785
++ LSGGQ+QR+ +ARA+ + D+ L D+P S +DA + + K
Sbjct: 135 LNR-----YPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKK--- 186
Query: 786 LGLLRSK---TVIYVTH-QVEFLPAADLILVMKDGKITQAG 822
L+ K T IYVTH QVE + D I VM G++ Q G
Sbjct: 187 ---LQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIG 224
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 2e-15
Identities = 62/234 (26%), Positives = 111/234 (47%), Gaps = 32/234 (13%)
Query: 1055 VDILNLQVRYAPHLPLV--LRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGE 1112
+ + N+ + + L ++ P G G++G +G+GKSTLI+ + + PT G
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 1113 IVIDGINISSI---GLHDLRSRLSIIPQDPTMFEG-TVRNNLD-PLE------EYKDEEI 1161
+++DG ++++ L R ++ +I Q + TV N+ PLE + +
Sbjct: 85 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 144
Query: 1162 WEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATAS 1221
E L LGD+ + L S GQ+Q V + R L KVL+ D+AT++
Sbjct: 145 TELLSLVGLGDKHDSYPSNL-----------SGGQKQRVAIARALASNPKVLLCDQATSA 193
Query: 1222 VDTATDNLIQQTLR---QHFSDCTVITIAHRITSVIDS--DMVLLLSHG-IIEE 1269
+D AT I + L+ + T++ I H + V+ D V ++S+G +IE+
Sbjct: 194 LDPATTRSILELLKDINRRL-GLTILLITHEM-DVVKRICDCVAVISNGELIEQ 245
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 4e-14
Identities = 59/257 (22%), Positives = 109/257 (42%), Gaps = 44/257 (17%)
Query: 601 QSDVVEKHPRGSSETAIEIVDGNFAWDISSNNPT-LRDINLKVFHGMRVAVCGTVGSGKS 659
H + I++ + + + L +++L V G V G G+GKS
Sbjct: 9 HHHHSSGHIDDDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKS 68
Query: 660 SLLSCI-LGEVPKISGTLKLCGT-------KAYVAQSPWI----------QSGNIEDNIL 701
+L+ C+ L E P G++ + G I S + N+
Sbjct: 69 TLIRCVNLLERPT-EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVA 127
Query: 702 FGKPMDREKYDRVLEACSLKKDLEILSFGDQTV-IGERG----INLSGGQKQRIQIARAL 756
P++ + + ++ E+LS V +G++ NLSGGQKQR+ IARAL
Sbjct: 128 L--PLELDNTPK---DEVKRRVTELLSL----VGLGDKHDSYPSNLSGGQKQRVAIARAL 178
Query: 757 YQDADIYLFDDPFSAVDAHTGS---HLFKEV--LLGLLRSKTVIYVTHQVEFLPA-ADLI 810
+ + L D SA+D T L K++ LGL T++ +TH+++ + D +
Sbjct: 179 ASNPKVLLCDQATSALDPATTRSILELLKDINRRLGL----TILLITHEMDVVKRICDCV 234
Query: 811 LVMKDGKITQAGKYNDI 827
V+ +G++ + +++
Sbjct: 235 AVISNGELIEQDTVSEV 251
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 76.1 bits (188), Expect = 1e-14
Identities = 64/234 (27%), Positives = 98/234 (41%), Gaps = 68/234 (29%)
Query: 631 NNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKIS-GTLKLCGTK------ 682
+R+++L+V G + + G G GK++ L I G E + S G + +
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLE--EPSRGQIYIGDKLVADPEK 72
Query: 683 -----------AYVAQS----PWIQSGNIEDNILFG---KPMDREKYD-RVLEACSLKKD 723
A V QS P + + DNI F + + R++ D RV E L
Sbjct: 73 GIFVPPKDRDIAMVFQSYALYPHM---TVYDNIAFPLKLRKVPRQEIDQRVREVAEL--- 126
Query: 724 LEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKE 783
L + ++ + LSGGQ+QR+ + RA+ + ++L D+P S +DA K
Sbjct: 127 LGLTELLNR-----KPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDA-------K- 173
Query: 784 VLLGLLRSK--------------TVIYVTH-QVEFLPAADLILVMKDGKITQAG 822
LR + T IYVTH QVE + D I VM G + Q G
Sbjct: 174 -----LRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVG 222
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 1e-04
Identities = 40/157 (25%), Positives = 68/157 (43%), Gaps = 51/157 (32%)
Query: 1087 IVGRTGSGKSTLIQTLFRIV----EPTAGEIVIDG--INISSIGLHDLRSRLSIIPQD-- 1138
++G +G GK+T + R++ EP+ G+I I + D + + P+D
Sbjct: 34 LLGPSGCGKTTTL----RMIAGLEEPSRGQIYIGDKLVA-------DPEKGIFVPPKDRD 82
Query: 1139 -----------PTMFEGTVRNNLD-PLEEYK------DEEIWEALDKCQLGDEVRNKEGK 1180
P M TV +N+ PL+ K D+ + E + L + + K +
Sbjct: 83 IAMVFQSYALYPHM---TVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRE 139
Query: 1181 LDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDE 1217
L S GQRQ V LGR +++K +V ++DE
Sbjct: 140 L-----------SGGQRQRVALGRAIVRKPQVFLMDE 165
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 77.2 bits (189), Expect = 3e-14
Identities = 53/382 (13%), Positives = 120/382 (31%), Gaps = 111/382 (29%)
Query: 1009 VIWNLCNLENKIIS--VERILQ------YTCISSEP--PLVIEESRPDCSWPTHGEVDIL 1058
+ W L + + +++ VE +L+ + I +E P ++ + + + +
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126
Query: 1059 N-LQV-RYAPHLPL--VLRGLTCTFPGGMKTGIV--GRTGSGKSTL-------------- 1098
V R P+L L L L P ++ G GSGK+ +
Sbjct: 127 AKYNVSRLQPYLKLRQALLELR---PAK---NVLIDGVLGSGKTWVALDVCLSYKVQCKM 180
Query: 1099 ---------------------IQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQ 1137
+Q L ++P NI + +H +++ L +
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI-KLRIHSIQAELRRL-- 237
Query: 1138 DPTMFEGTVRNNLDPLEEYKDEEIWEALD-KCQLGDEVRNKE------GKLDSRVTENGE 1190
+ N L L ++ + W A + C++ R K+ + ++ +
Sbjct: 238 ---LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294
Query: 1191 NWSMGQRQL------------------VCLGRVLL---------------KKSKVLVLDE 1217
+ ++ ++ V K + D+
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354
Query: 1218 ATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLL 1277
T ++++ + L R+ F +V + I +++ + L+ I + L
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL---LSLIWFDVIKSDVMVVVNKL 411
Query: 1278 ENKSSSFAQLVAEYTQRSSSSL 1299
S LV + + S+ S+
Sbjct: 412 HKYS-----LVEKQPKESTISI 428
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.5 bits (143), Expect = 7e-09
Identities = 86/607 (14%), Positives = 179/607 (29%), Gaps = 207/607 (34%)
Query: 569 EPIYNLPDTISMIIQTKVSLDRIASFLCLDDLQSDVVE---------------------- 606
+ I D +S R+ F L Q ++V+
Sbjct: 52 DHIIMSKDAVS-------GTLRL--FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ 102
Query: 607 KHPRGSSETAIEIVDGNFAWDISSNNPTLRDIN---LKVFHGMR-----------VAVCG 652
+ P + IE D + ++N N L+ + +R V + G
Sbjct: 103 RQPSMMTRMYIEQRDRLY-----NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG 157
Query: 653 TVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSP----WIQSGNI--EDNILFGKPM 706
+GSGK+ + L +C + + W+ N + +L
Sbjct: 158 VLGSGKTWV-------------ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL----- 199
Query: 707 DREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDA-----D 761
+L+ + D S D + + I+ S + R + Y++ +
Sbjct: 200 ------EMLQKLLYQIDPNWTSRSDHSSNIKLRIH-SIQAELRRLLKSKPYENCLLVLLN 252
Query: 762 IY------LFD------------DPFSAVDAHTGSHLF-KEVLLGLLRSKTV----IYVT 798
+ F+ + A T +H+ + L + Y+
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 799 HQVEFLP---------AADLI-LVMKDGKITQAGKYNDILNSGTDFMVLVGAHQQALSAL 848
+ + LP +I ++DG T +++ + D L + +L+ L
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLAT----WDNWKHVNCD--KLTTIIESSLNVL 366
Query: 849 DSIEGGPVSERISMNKEN------------GGMDTTNGVTMKEGNED-----IQTDKVDE 891
+ E + +R+S+ + + + M N+ ++ +
Sbjct: 367 EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS--DVMVVVNKLHKYSLVEKQPKES 424
Query: 892 QYYIPS--------ARELSRLVGVCKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLV 943
IPS L ++ H++ ++FD + +
Sbjct: 425 TISIPSIYLELKVKLENEYAL----HRSIVDHYN-------IPKTFDSDDLIPPY----L 469
Query: 944 DGY--SRPKFHIAGAM---EWLCFR---LDMLSSLTFAFSLVLLISIPKGVIEPAIAGLA 995
D Y S H+ FR LD F F + + + + A A
Sbjct: 470 DQYFYSHIGHHLKNIEHPERMTLFRMVFLD------FRF-------LEQKIRHDSTAWNA 516
Query: 996 VTYGLN----LNMLQAWVIWN-------LCNLENKIISVERIL---QYTCI-----SSEP 1036
LN L + ++ N + + + + +E L +YT + +E
Sbjct: 517 SGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAED 576
Query: 1037 PLVIEES 1043
+ EE+
Sbjct: 577 EAIFEEA 583
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 2e-04
Identities = 77/542 (14%), Positives = 157/542 (28%), Gaps = 176/542 (32%)
Query: 32 SWVWKKLRVGVSDSEG-------YKER-------FKKKSVLRHKLI------LF------ 65
++ ++ ++R F K +V R + L
Sbjct: 92 KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK 151
Query: 66 ---------C---CFAVSVFN--LVLCLLDY--FSW--FGNDWSGDKLVT-LADLVLR-T 105
A+ V V C +D+ F W N S + ++ L L+ +
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF-WLNLKNCNSPETVLEMLQKLLYQID 210
Query: 106 LGWGAICVYLHS--QFFNSGQQRFPLLLRLWWGFYLCLSCYCLVSDIVLYAQHV---SLS 160
W + + + +S Q LL+ + CL LV V A+ +LS
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLK-SKPYENCL----LVLLNVQNAKAWNAFNLS 265
Query: 161 VHYLV----SDVVSVISGFVFCYVGFLKRDKG---EDTLLLQETLLDGD----------- 202
L+ V +S ++ ++ L LD
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT 325
Query: 203 -----SSIG-----------------NGEVSSIKSRGTDNVTP------YSNASLF---- 230
S I ++++I + + P + S+F
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA 385
Query: 231 ----SVLTFSWMG----------------SLISLGNKK-TLDLEDVPQLDSGDSVVGCFP 269
+L+ W SL+ K+ T+ + + L+
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI-YLE---------- 434
Query: 270 IFRNKLEANRVEGNK--VTAFKLTKALFFSAWKEIVFTAILALLYTLANYVGPYLIDTFV 327
+ KLE N ++ V + + K F + L Y L Y ++
Sbjct: 435 -LKVKLE-NEYALHRSIVDHYNIPKT--FDSDD-------LIPPY-LDQYFYSHIGHHLK 482
Query: 328 QYLNGER--EFKNEGYVLVSTFFV-AKIVECLAQRHWMFRLQVAGIKMRSVLVSMVYNKG 384
+ ER F+ V + F+ KI RH +G + ++ Y
Sbjct: 483 NIEHPERMTLFRM---VFLDFRFLEQKI------RHDSTAWNASGSILNTLQQLKFYKPY 533
Query: 385 LTLSCQAKQSYTSGEIINFMTVDAERIGDFGWYMHDPWLVILQVSLALLILYKNLGLASI 444
+ + + + I++F+ E + + + +L+++L + ++ +
Sbjct: 534 ICDNDPKYERLVN-AILDFLPKIEENL------ICSKYTDLLRIAL----MAEDEAIFEE 582
Query: 445 AA 446
A
Sbjct: 583 AH 584
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 3e-04
Identities = 45/261 (17%), Positives = 79/261 (30%), Gaps = 67/261 (25%)
Query: 6 EFLLKPAFLRGISGSLHLVLLLG--LFVSWVWKKLRVGVSDSEGYKERFKKK-------S 56
LLK +L L +L +S + + +R G++ + +K K S
Sbjct: 305 SLLLK--YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362
Query: 57 V-------LRHKLILFCCFAVSVFNL---VLCLLDYFSWFGNDWSGDKLVTLADLVLRTL 106
+ R F S ++ +L L+ WF S +V + L +L
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSA-HIPTILLSLI----WFDVIKSDVMVV-VNKLHKYSL 416
Query: 107 ---GWGAICVYLHSQFFNSGQQRFPLLLRLWWGFYLCLSCYCLVSDIVLYAQHVSLSVHY 163
+ + S + L L V YA H S+ HY
Sbjct: 417 VEKQPKESTISIPS-----------IYLEL------------KVKLENEYALHRSIVDHY 453
Query: 164 LVSD-------VVSVISGFVFCYVGF-LKR-DKGEDTLLLQETLLDGDSSIGNGEVSSIK 214
+ + + + + ++G LK + E L + LD + I+
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD-FRFLEQ----KIR 508
Query: 215 SRGTDNVTPYSNASLFSVLTF 235
T S + L F
Sbjct: 509 HDSTAWNASGSILNTLQQLKF 529
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 73.7 bits (182), Expect = 9e-14
Identities = 67/238 (28%), Positives = 97/238 (40%), Gaps = 80/238 (33%)
Query: 631 NNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKIS-GTLKLCGTK------ 682
+DINL + G V G G GKS+LL I G E I+ G L + +
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE--TITSGDLFIGEKRMNDTPP 72
Query: 683 -----AYVAQS----PWIQSGNIEDNILFG---KPMDREKYD-RVLEACSLKKDLEILSF 729
V QS P + ++ +N+ FG +E + RV + E+L
Sbjct: 73 AERGVGMVFQSYALYPHL---SVAENMSFGLKLAGAKKEVINQRVNQVA------EVL-- 121
Query: 730 GDQTVIGERGIN---------LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHL 780
+ LSGGQ+QR+ I R L + ++L D+P S +DA
Sbjct: 122 ---------QLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAA----- 167
Query: 781 FKEVLLGLLR-------SK-------TVIYVTH-QVEFLPAADLILVMKDGKITQAGK 823
LR S+ T+IYVTH QVE + AD I+V+ G++ Q GK
Sbjct: 168 --------LRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGK 217
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 64.4 bits (158), Expect = 2e-11
Identities = 41/172 (23%), Positives = 83/172 (48%), Gaps = 24/172 (13%)
Query: 1056 DILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVI 1115
++ +L V Y ++G+ P G ++G G+GK+T + + +V G+I+
Sbjct: 8 EVQSLHVYYGAIH--AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIF 65
Query: 1116 DGINISSIGLHDL-RSRLSIIPQDPTMFEG-TVRNNLDPLEEY---KDEEIWEALDKC-- 1168
+G +I++ H + R ++++P+ +F TV NL + Y E I L+
Sbjct: 66 NGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLM-MGAYNRKDKEGIKRDLEWIFS 124
Query: 1169 ---QLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDE 1217
+L + ++ G L S G++Q++ +GR L+ + K+L++DE
Sbjct: 125 LFPRLKERLKQLGGTL-----------SGGEQQMLAIGRALMSRPKLLMMDE 165
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 47.1 bits (113), Expect = 2e-05
Identities = 44/159 (27%), Positives = 66/159 (41%), Gaps = 39/159 (24%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KA 683
++ I+LKV G V + G G+GK++ LS I G V G + G +
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM 81
Query: 684 YVAQSPWIQSG-------NIEDNILFG--KPMDREKYDRVLEACSLKKDLEILS-FGDQT 733
+A P G + +N++ G D+E R LE I S F
Sbjct: 82 GIALVP---EGRRIFPELTVYENLMMGAYNRKDKEGIKRDLE--------WIFSLF---P 127
Query: 734 VIGER----GINLSGGQKQRIQIARALYQDADIYLFDDP 768
+ ER G LSGG++Q + I RAL + + D+P
Sbjct: 128 RLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEP 166
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 52.1 bits (126), Expect = 4e-07
Identities = 55/237 (23%), Positives = 93/237 (39%), Gaps = 56/237 (23%)
Query: 1070 LVLRGLTCTFPGGMK--------------TGIVGRTGSGKSTLIQTLFRIVEPTAGEIVI 1115
L + F G K T I+G GSGKSTLI + ++ G +
Sbjct: 8 LRTENIVKYF-GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYF 66
Query: 1116 DGINISSIGLHDLRSRLSIIP--QDPTMFEG-TV------------RNNLDPL------- 1153
+ +I++ +L I+ Q P + TV + L+ L
Sbjct: 67 ENKDITNKEPAEL-YHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIP 125
Query: 1154 -EEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKV 1212
EE E+ ++ L+ +L K G+L S GQ +LV +GR L+ K+
Sbjct: 126 KEEEMVEKAFKILEFLKLSHLYDRKAGEL-----------SGGQMKLVEIGRALMTNPKM 174
Query: 1213 LVLDEATASV-DTATDNLIQ--QTLRQHFSDCTVITIAHRITSVID-SDMVLLLSHG 1265
+V+DE A V ++ L+ T + I HR+ V++ D + ++ +G
Sbjct: 175 IVMDEPIAGVAPGLAHDIFNHVLELKAK--GITFLIIEHRLDIVLNYIDHLYVMFNG 229
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 52.0 bits (124), Expect = 6e-07
Identities = 24/139 (17%), Positives = 46/139 (33%), Gaps = 18/139 (12%)
Query: 695 NIEDNILFGKPMDREKYDRVLEACSLKKDLEILS----FGDQTVIGERGIN-----LSGG 745
E + + K E++ + + G LSGG
Sbjct: 193 YKALAREAALSKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGG 252
Query: 746 QKQRIQIA------RALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRS-KTVIYVT 798
++ + +A L + + + D+P +D L ++ L+ VI V+
Sbjct: 253 ERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKL-ITIMERYLKKIPQVILVS 311
Query: 799 HQVEFLPAAD-LILVMKDG 816
H E AAD +I + +
Sbjct: 312 HDEELKDAADHVIRISLEN 330
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 4e-05
Identities = 21/100 (21%), Positives = 41/100 (41%), Gaps = 9/100 (9%)
Query: 720 LKKDLEILSFGDQTVIGERGIN-LSGGQKQRIQIA------RALYQDADIYLFDDPFSAV 772
++ + + ER + LSGG++ + +A L + + + D+P +
Sbjct: 35 VRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYL 94
Query: 773 DAHTGSHLFKEVLLGLLRS-KTVIYVTHQVEFLPAADLIL 811
D L ++ L+ VI V+H E AAD ++
Sbjct: 95 DEERRRKLI-TIMERYLKKIPQVILVSHDEELKDAADHVI 133
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1300 | ||||
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-69 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 3e-59 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 1e-65 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 5e-53 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 2e-65 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 3e-57 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 6e-62 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 8e-49 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 2e-58 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 4e-52 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 8e-57 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 2e-49 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 4e-32 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 3e-27 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 1e-31 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 6e-31 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 2e-31 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 5e-31 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 3e-31 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 1e-25 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 9e-29 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 3e-25 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 1e-28 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 7e-25 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 2e-27 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 5e-24 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 4e-27 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 7e-25 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 2e-26 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 7e-24 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 4e-26 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 7e-25 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 6e-26 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 3e-24 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 2e-24 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 1e-22 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 4e-23 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 1e-21 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 8e-22 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 1e-21 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 2e-17 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 1e-15 | |
| d3b60a2 | 319 | f.37.1.1 (A:10-328) Multidrug resistance ABC trans | 6e-10 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 6e-10 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 3e-08 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-06 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.002 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 4e-06 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 231 bits (591), Expect = 2e-69
Identities = 70/240 (29%), Positives = 129/240 (53%), Gaps = 2/240 (0%)
Query: 1051 THGEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTA 1110
G +DI ++ +Y + +L+ + + G VG +G GKSTLI + R + T+
Sbjct: 13 KQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTS 72
Query: 1111 GEIVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNL-DPLEEYKDEEIWEALDKCQ 1169
G+I+IDG NI LR+++ ++ QD +F TV+ N+ DEE+ EA
Sbjct: 73 GQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMAN 132
Query: 1170 LGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNL 1229
D + N D+ V E G S GQ+Q + + R+ L +L+LDEAT+++D ++++
Sbjct: 133 AHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESI 192
Query: 1230 IQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLVA 1289
IQ+ L D T + +AHR++++ +D ++++ +G I E + +L+ + ++ L +
Sbjct: 193 IQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQ-GAYEHLYS 251
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 202 bits (515), Expect = 3e-59
Identities = 69/240 (28%), Positives = 116/240 (48%), Gaps = 16/240 (6%)
Query: 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 676
I+I +F ++ + P L+DINL + G VA G G GKS+L++ I SG +
Sbjct: 17 IDIDHVSFQYN-DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQI 75
Query: 677 KLCGTK-------------AYVAQSPWIQSGNIEDNILFGKPM-DREKYDRVLEACSLKK 722
+ G V Q + S +++NIL G+P E+ + +
Sbjct: 76 LIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHD 135
Query: 723 DLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFK 782
+ L G T +GERG+ LSGGQKQR+ IAR + I + D+ SA+D + S + +
Sbjct: 136 FIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESII-Q 194
Query: 783 EVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSGTDFMVLVGAHQ 842
E L L + +T + V H++ + AD I+V+++G I + G + +++ + L
Sbjct: 195 EALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLYSIQN 254
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 221 bits (565), Expect = 1e-65
Identities = 90/279 (32%), Positives = 155/279 (55%), Gaps = 4/279 (1%)
Query: 584 TKVSLDRIASFLCLDDLQSDVVEKHPRGSSETAIEIVDGN--FAWDISSNNPTLRDINLK 641
T + ++ + +F ++ +++EK + + + + N F+ NP L++INL
Sbjct: 1 TGIIMENVTAFW--EEGFGELLEKVQQSNGDRKHSSDENNVSFSHLCLVGNPVLKNINLN 58
Query: 642 VFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGNIEDNIL 701
+ G +A+ G+ GSGK+SLL ILGE+ G +K G ++ +Q WI G I++NI+
Sbjct: 59 IEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENII 118
Query: 702 FGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDAD 761
FG D +Y V++AC L++D+ + D TV+GE G+ LSGGQ+ RI +ARA+Y+DAD
Sbjct: 119 FGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDAD 178
Query: 762 IYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQA 821
+YL D PF +D T +F+ + L+ +KT I VT ++E L AD IL++ G
Sbjct: 179 LYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFY 238
Query: 822 GKYNDILNSGTDFMVLVGAHQQALSALDSIEGGPVSERI 860
G ++++ + DF + + + ++E +
Sbjct: 239 GTFSELQSLRPDFSSKLMGYDTFDQFTEERRSSILTETL 277
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 185 bits (470), Expect = 5e-53
Identities = 55/272 (20%), Positives = 111/272 (40%), Gaps = 20/272 (7%)
Query: 1021 ISVERIL-QYTCISSEPPLVIEESRPDCS-WPTHGEVDILNLQVRYAPHLPLVLRGLTCT 1078
I +E + + E +++S D V +L + P VL+ +
Sbjct: 3 IIMENVTAFWEEGFGELLEKVQQSNGDRKHSSDENNVSFSHLCLVGNP----VLKNINLN 58
Query: 1079 FPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQD 1138
G I G TGSGK++L+ + +E + G I G R+S Q
Sbjct: 59 IEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RVSFCSQF 105
Query: 1139 PTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQ 1198
+ GT++ N+ Y + + CQL ++ + ++ + E G S GQR
Sbjct: 106 SWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRA 165
Query: 1199 LVCLGRVLLKKSKVLVLDEATASVDTAT-DNLIQQTLRQHFSDCTVITIAHRITSVIDSD 1257
+ L R + K + + +LD +D T + + + + + ++ T I + ++ + +D
Sbjct: 166 RISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKAD 225
Query: 1258 MVLLLSHGIIEEYDSPTKLLENKSSSFAQLVA 1289
+L+L G Y + ++L + ++L+
Sbjct: 226 KILILHQGSSYFYGTFSELQSLRPDFSSKLMG 257
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 219 bits (560), Expect = 2e-65
Identities = 78/238 (32%), Positives = 132/238 (55%), Gaps = 3/238 (1%)
Query: 1053 GEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGE 1112
G+++ N+ Y LR + P G +VGR+GSGKST+ + R + G
Sbjct: 12 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGH 71
Query: 1113 IVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNN--LDPLEEYKDEEIWEALDKCQL 1170
I++DG ++ L LR++++++ Q+ +F TV NN EEY E+I EA
Sbjct: 72 ILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYA 131
Query: 1171 GDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLI 1230
D + + LD+ + ENG S GQRQ + + R LL+ S +L+LDEAT+++DT ++ I
Sbjct: 132 MDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAI 191
Query: 1231 QQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLV 1288
Q L + + T + IAHR++++ +D ++++ GII E + ++LL + +AQL
Sbjct: 192 QAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLA-QHGVYAQLH 248
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 196 bits (500), Expect = 3e-57
Identities = 68/238 (28%), Positives = 117/238 (49%), Gaps = 17/238 (7%)
Query: 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGT 675
+E + F + P LR+INLK+ G VA+ G GSGKS++ S I G
Sbjct: 13 DLEFRNVTFTYP-GREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGH 71
Query: 676 LKLCGTK-------------AYVAQSPWIQSGNIEDNILFGKP--MDREKYDRVLEACSL 720
+ + G A V+Q+ + + + +NI + + RE+ +
Sbjct: 72 ILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYA 131
Query: 721 KKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHL 780
+ + G T+IGE G+ LSGGQ+QRI IARAL +D+ I + D+ SA+D + +
Sbjct: 132 MDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAI 191
Query: 781 FKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSGTDFMVLV 838
L L +++T + + H++ + AD I+V++DG I + G ++++L + L
Sbjct: 192 Q-AALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLH 248
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 209 bits (533), Expect = 6e-62
Identities = 67/236 (28%), Positives = 126/236 (53%), Gaps = 1/236 (0%)
Query: 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEI 1113
++ N++ RY P P++L + + G GIVGR+GSGKSTL + + R P G++
Sbjct: 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 60
Query: 1114 VIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNL-DPLEEYKDEEIWEALDKCQLGD 1172
+IDG +++ + LR ++ ++ QD + ++ +N+ E++ A D
Sbjct: 61 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHD 120
Query: 1173 EVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQ 1232
+ ++ V E G S GQRQ + + R L+ K+L+ DEAT+++D ++++I +
Sbjct: 121 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 180
Query: 1233 TLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLV 1288
+ + TVI IAHR+++V ++D ++++ G I E +LL S ++ L
Sbjct: 181 NMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLY 236
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 171 bits (435), Expect = 8e-49
Identities = 67/227 (29%), Positives = 108/227 (47%), Gaps = 16/227 (7%)
Query: 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 676
I + F + + L +INL + G + + G GSGKS+L I +G +
Sbjct: 2 ITFRNIRFRYK-PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 60
Query: 677 KLCGTK-------------AYVAQSPWIQSGNIEDNILFGKP-MDREKYDRVLEACSLKK 722
+ G V Q + + +I DNI P M EK +
Sbjct: 61 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHD 120
Query: 723 DLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFK 782
+ L G T++GE+G LSGGQ+QRI IARAL + I +FD+ SA+D + +
Sbjct: 121 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM- 179
Query: 783 EVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILN 829
+ + + +TVI + H++ + AD I+VM+ GKI + GK+ ++L+
Sbjct: 180 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLS 226
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 200 bits (509), Expect = 2e-58
Identities = 72/245 (29%), Positives = 119/245 (48%), Gaps = 6/245 (2%)
Query: 1049 WPTHGEVDILNLQVRYAPHL-PLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVE 1107
G V ++ Y LVL+GLT T G T +VG GSGKST+ L + +
Sbjct: 6 LHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ 65
Query: 1108 PTAGEIVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNL--DPLEEYKDEEIWEAL 1165
PT G++++DG + L +++ + Q+P +F +++ N+ ++ EEI A
Sbjct: 66 PTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAA 125
Query: 1166 DKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTA 1225
K + D+ V E G S GQRQ V L R L++K VL+LD+AT+++D
Sbjct: 126 VKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDAN 185
Query: 1226 TDNLIQQTLR--QHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSS 1283
+ ++Q L +V+ I ++ V +D +L L G I E + +L+E K
Sbjct: 186 SQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKK-GC 244
Query: 1284 FAQLV 1288
+ +V
Sbjct: 245 YWAMV 249
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 181 bits (461), Expect = 4e-52
Identities = 57/241 (23%), Positives = 105/241 (43%), Gaps = 16/241 (6%)
Query: 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGT 675
++ D +FA+ + L+ + + G A+ G GSGKS++ + + G
Sbjct: 11 LVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQ 70
Query: 676 LKLCGTK-------------AYVAQSPWIQSGNIEDNILFGKPMD--REKYDRVLEACSL 720
L L G A V Q P + ++++NI +G E+
Sbjct: 71 LLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGA 130
Query: 721 KKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHL 780
+ L G T + E G LSGGQ+Q + +ARAL + + + DD SA+DA++ +
Sbjct: 131 HSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQV 190
Query: 781 FKEVL-LGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSGTDFMVLVG 839
+ + S++V+ +T + + AD IL ++ G I + G + ++ + +V
Sbjct: 191 EQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYWAMVQ 250
Query: 840 A 840
A
Sbjct: 251 A 251
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 194 bits (495), Expect = 8e-57
Identities = 76/234 (32%), Positives = 125/234 (53%), Gaps = 4/234 (1%)
Query: 1059 NLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGI 1118
++ Y +LR ++ G +G GKST+ L R +PTAGEI IDG
Sbjct: 6 HVDFAY-DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQ 64
Query: 1119 NISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLD--PLEEYKDEEIWEALDKCQLGDEVRN 1176
I +I L + RS++ + QD + GT+R NL +Y DE++W+ LD V N
Sbjct: 65 PIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVEN 124
Query: 1177 KEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQ 1236
+L++ V E G S GQRQ + + R L+ K+L+LDEATAS+D+ +++++Q+ L
Sbjct: 125 MPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDS 184
Query: 1237 HFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLVAE 1290
T + IAHR+++++D+D + + G I +L+ +A+ V+E
Sbjct: 185 LMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSE 237
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 173 bits (441), Expect = 2e-49
Identities = 61/238 (25%), Positives = 118/238 (49%), Gaps = 18/238 (7%)
Query: 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 676
+ +FA+D + LRDI+ + +A G G GKS++ S + +G +
Sbjct: 2 LSARHVDFAYD--DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 677 KLCGTK-------------AYVAQSPWIQSGNIEDNILFG--KPMDREKYDRVLEACSLK 721
+ G +V+Q I +G I +N+ +G E +VL+ +
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 722 KDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLF 781
+E + T +GERG+ +SGGQ+QR+ IARA ++ I + D+ +++D+ + S +
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 782 KEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSGTDFMVLVG 839
K L L++ +T + + H++ + AD I ++ G+IT +GK+N+++ + + V
Sbjct: 180 KA-LDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVS 236
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 124 bits (312), Expect = 4e-32
Identities = 64/271 (23%), Positives = 121/271 (44%), Gaps = 39/271 (14%)
Query: 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEI 1113
++ +++L RY H VL+G++ G I+G +GSGKST ++ + + +P+ G I
Sbjct: 2 KLHVIDLHKRYGGHE--VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 59
Query: 1114 VIDGINISSIGLHD-------------LRSRLSIIPQDPTMFEG-TVRNNLD--PLEEYK 1157
+++G NI+ + D LR+RL+++ Q ++ TV N+ P++
Sbjct: 60 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG 119
Query: 1158 ------DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSK 1211
E + L K + + + K + S GQ+Q V + R L +
Sbjct: 120 LSKHDARERALKYLAKVGIDERAQGKYPV----------HLSGGQQQRVSIARALAMEPD 169
Query: 1212 VLVLDEATASVD-TATDNLIQQTLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEE 1269
VL+ DE T+++D +++ + T++ + H + S V+ L G IEE
Sbjct: 170 VLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE 229
Query: 1270 YDSPTKLLENKSSSFAQLVAEYTQRSSSSLE 1300
P ++ N S + ++ + S LE
Sbjct: 230 EGDPEQVFGNPQSPR---LQQFLKGSLKKLE 257
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 109 bits (275), Expect = 3e-27
Identities = 52/247 (21%), Positives = 102/247 (41%), Gaps = 43/247 (17%)
Query: 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 676
+ ++D + + + L+ ++L+ G +++ G+ GSGKS+ L CI G +
Sbjct: 3 LHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 59
Query: 677 KLCGTK--------------------------AYVAQSP-WIQSGNIEDNILFG-----K 704
+ G V Q + +N++
Sbjct: 60 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG 119
Query: 705 PMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYL 764
+ +R L+ L + ++ G+ ++LSGGQ+QR+ IARAL + D+ L
Sbjct: 120 LSKHDARERALKY------LAKVGIDER-AQGKYPVHLSGGQQQRVSIARALAMEPDVLL 172
Query: 765 FDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGK 823
FD+P SA+D + + + KT++ VTH++ F + ++ + GKI + G
Sbjct: 173 FDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGD 232
Query: 824 YNDILNS 830
+ +
Sbjct: 233 PEQVFGN 239
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 122 bits (307), Expect = 1e-31
Identities = 56/216 (25%), Positives = 92/216 (42%), Gaps = 35/216 (16%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------------ 682
L+++NL + G V++ G GSGKS++L+ I G + + K
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 683 -----AYVAQSPW-IQSGNIEDNILFG-------KPMDREKYDRVLEACSLKKDLEILSF 729
+V Q I +N+ E+ R LE ++
Sbjct: 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECL------KMAEL 134
Query: 730 GDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL 789
++ + LSGGQ+QR+ IARAL + I L D P A+D+ TG + ++L L
Sbjct: 135 EER-FANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIM-QLLKKLN 192
Query: 790 RS--KTVIYVTHQVEFLPAADLILVMKDGKITQAGK 823
KTV+ VTH + + I+ +KDG++ + K
Sbjct: 193 EEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEK 228
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 119 bits (301), Expect = 6e-31
Identities = 47/228 (20%), Positives = 92/228 (40%), Gaps = 9/228 (3%)
Query: 1055 VDILNLQVRYAP--HLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGE 1112
+ + N+ Y + L+ + G I+G +GSGKST++ + + +PT GE
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 1113 IVIDGINISSIGLHDL----RSRLSIIPQDPTMFEG-TVRNNLDPLEEYKDEEIWEALDK 1167
+ ID I + + +L R ++ + Q + T N++ +K ++
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 1168 CQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATD 1227
+ E + S GQ+Q V + R L +++ D+ T ++D+ T
Sbjct: 122 RKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTG 181
Query: 1228 NLIQQTLR--QHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSP 1273
I Q L+ TV+ + H I + ++ L G +E +
Sbjct: 182 EKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 121 bits (306), Expect = 2e-31
Identities = 55/244 (22%), Positives = 106/244 (43%), Gaps = 26/244 (10%)
Query: 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEI 1113
EV + NL R+ + L T G ++G +G GK+T ++ + + EPT G I
Sbjct: 6 EVKLENLTKRFGNFT--AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 63
Query: 1114 VIDGINISSIGLHDLRSRLSIIPQDPTMFEG-TVRNNLD-PLEEYK------DEEIWEAL 1165
+++ L +S++ Q ++ TV N+ PL+ K D+ + A
Sbjct: 64 YFGDRDVTY--LPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAA 121
Query: 1166 DKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTA 1225
+ Q+ E L+ + S GQRQ V + R ++ + VL++DE +++D
Sbjct: 122 ELLQI-------EELLNRYPAQ----LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAK 170
Query: 1226 TDNLIQQTLR--QHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENKSS 1282
++ ++ Q T I + H + D + +++ G + + SPT++ +S
Sbjct: 171 LRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNS 230
Query: 1283 SFAQ 1286
F
Sbjct: 231 VFVA 234
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 120 bits (302), Expect = 5e-31
Identities = 55/213 (25%), Positives = 85/213 (39%), Gaps = 26/213 (12%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK-----------A 683
+ +NL + G + + G G GK++ L I G G + +
Sbjct: 22 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNIS 81
Query: 684 YVAQSPWIQSG-NIEDNILFGKPM----DREKYDRVLEACSLKKDLEILSFGDQTVIGER 738
V QS + + +NI F + E RV A E+L + +
Sbjct: 82 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWA------AELLQIEEL--LNRY 133
Query: 739 GINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL-LGLLRSKTVIYV 797
LSGGQ+QR+ +ARA+ + D+ L D+P S +DA + E+ L T IYV
Sbjct: 134 PAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYV 193
Query: 798 THQVEFLPA-ADLILVMKDGKITQAGKYNDILN 829
TH D I VM G++ Q G ++
Sbjct: 194 THDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL 226
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 121 bits (304), Expect = 3e-31
Identities = 66/248 (26%), Positives = 116/248 (46%), Gaps = 27/248 (10%)
Query: 1055 VDILNLQVRYAPHLPLV--LRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGE 1112
+ + N+ + + L ++ P G G++G +G+GKSTLI+ + + PT G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 1113 IVIDGINISSIGLHD---LRSRLSIIPQDPTMF-EGTVRNNLD-PLEEYK------DEEI 1161
+++DG ++++ + R ++ +I Q + TV N+ PLE +
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 1162 WEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATAS 1221
E L LGD K DS + S GQ+Q V + R L KVL+ DEAT++
Sbjct: 122 TELLSLVGLGD-------KHDSYPSN----LSGGQKQRVAIARALASNPKVLLCDEATSA 170
Query: 1222 VDTATDNLIQQTLR--QHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLE 1278
+D AT I + L+ T++ I H + V D V ++S+G + E D+ +++
Sbjct: 171 LDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230
Query: 1279 NKSSSFAQ 1286
+ + AQ
Sbjct: 231 HPKTPLAQ 238
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 104 bits (261), Expect = 1e-25
Identities = 50/219 (22%), Positives = 93/219 (42%), Gaps = 31/219 (14%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------------ 682
L +++L V G V G G+GKS+L+ C+ G++ + G +
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80
Query: 683 ----AYVAQSP-WIQSGNIEDNILFG----KPMDREKYDRVLEACSLKKDLEILSFGDQT 733
+ Q + S + N+ E RV E L ++ GD+
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTEL------LSLVGLGDK- 133
Query: 734 VIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL-LGLLRSK 792
NLSGGQKQR+ IARAL + + L D+ SA+D T + + + +
Sbjct: 134 -HDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGL 192
Query: 793 TVIYVTHQVEF-LPAADLILVMKDGKITQAGKYNDILNS 830
T++ +TH+++ D + V+ +G++ + +++ +
Sbjct: 193 TILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSH 231
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 113 bits (285), Expect = 9e-29
Identities = 43/220 (19%), Positives = 79/220 (35%), Gaps = 22/220 (10%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS 1130
L L+ G +VG G+GKSTL+ + + G I G + + L
Sbjct: 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGKGSIQFAGQPLEAWSATKLAL 72
Query: 1131 RLSIIPQDPTM-FEGTVRNNL-DPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTEN 1188
+ + Q T F V + L + E+ + LD ++ +
Sbjct: 73 HRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL----------ALDDKLGRS 122
Query: 1189 GENWSMGQRQLVCLGRVLLK-------KSKVLVLDEATASVDTATDNLIQQTLRQ-HFSD 1240
S G+ Q V L V+L+ ++L+LDE S+D A + + + L
Sbjct: 123 TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQG 182
Query: 1241 CTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLEN 1279
++ +H + + + LL G + ++L
Sbjct: 183 LAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 103 bits (258), Expect = 3e-25
Identities = 44/225 (19%), Positives = 89/225 (39%), Gaps = 36/225 (16%)
Query: 630 SNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------- 681
+ + L ++ +V G + + G G+GKS+LL+ + G G+++ G
Sbjct: 10 AESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG-KGSIQFAGQPLEAWSAT 68
Query: 682 -----KAYVAQSPWIQSG-NIEDNILFGKP--MDREKYDRVLEACSLKKDLEILSFGDQT 733
+AY++Q + + + E + V A +L L
Sbjct: 69 KLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKL--------- 119
Query: 734 VIGERGINLSGGQKQRIQIARALYQ-------DADIYLFDDPFSAVDAHTGSHLFKEVLL 786
G LSGG+ QR+++A + Q + L D+P +++D S L K +
Sbjct: 120 --GRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSA 177
Query: 787 GLLRSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDILNS 830
+ ++ +H + A ++K GK+ +G+ ++L
Sbjct: 178 LCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 113 bits (285), Expect = 1e-28
Identities = 48/221 (21%), Positives = 92/221 (41%), Gaps = 25/221 (11%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKA----------- 683
L +++ V G + G GSGKS+L++ I G + G +
Sbjct: 20 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 79
Query: 684 ---YVAQSPW-IQSGNIEDNILFGKPMDREKYDRVL--------EACSLKKDLEILSF-G 730
Q+P ++ + +N+L G+ E L E ++K +IL F
Sbjct: 80 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 139
Query: 731 DQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLR 790
+ + LSGGQ + ++I RAL + + + D+P + V +F VL +
Sbjct: 140 LSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK 199
Query: 791 SKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDILNS 830
T + + H+++ + D + VM +G+I G+ + + +
Sbjct: 200 GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 240
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 103 bits (257), Expect = 7e-25
Identities = 53/234 (22%), Positives = 94/234 (40%), Gaps = 15/234 (6%)
Query: 1059 NLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGI 1118
N+ + L G++ + G T I+G GSGKSTLI + ++ G + +
Sbjct: 9 NIVKYFGEFK--ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENK 66
Query: 1119 NISSIGLHDL-RSRLSIIPQDPTMFEG-TVRNNLDPLEEYKDEEIWEALDKCQLGDEVRN 1176
+I++ +L + Q P + TV NL E E +L + +
Sbjct: 67 DITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEE 126
Query: 1177 ---------KEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATD 1227
+ KL S GQ +LV +GR L+ K++V+DE A V
Sbjct: 127 MVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLA 186
Query: 1228 NLIQQTLRQ-HFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLEN 1279
+ I + + T + I HR+ V++ D + ++ +G I + ++N
Sbjct: 187 HDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 240
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 110 bits (276), Expect = 2e-27
Identities = 47/235 (20%), Positives = 90/235 (38%), Gaps = 23/235 (9%)
Query: 612 SSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK 671
S+ +E+ + + ++ I+LKV G V + G G+GK++ LS I G V
Sbjct: 2 VSDIVLEVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA 58
Query: 672 ISGTLKLC---------------GTKAYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLE 716
G + G + +N++ G ++K +
Sbjct: 59 QKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRD 118
Query: 717 ACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHT 776
+ L + + G LSGG++Q + I RAL + + D+P +
Sbjct: 119 LEWIFSLFPRLK----ERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPIL 174
Query: 777 GSHLFKEVLLGLLRSKTVIYVTHQVEF-LPAADLILVMKDGKITQAGKYNDILNS 830
S +F+ + T++ V L A V++ G+I GK +++L++
Sbjct: 175 VSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 100 bits (250), Expect = 5e-24
Identities = 46/227 (20%), Positives = 102/227 (44%), Gaps = 14/227 (6%)
Query: 1059 NLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGI 1118
+L V Y ++G+ P G ++G G+GK+T + + +V G+I+ +G
Sbjct: 11 SLHVYYGAIH--AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQ 68
Query: 1119 NISSIGLHDLRSR-LSIIPQDPTMFEG-TVRNNLDPLEEYK--DEEIWEALDKCQLGDEV 1174
+I++ H + ++++P+ +F TV NL + E I L + +
Sbjct: 69 DITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDL------EWI 122
Query: 1175 RNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVD-TATDNLIQQT 1233
+ +L R+ + G S G++Q++ +GR L+ + K+L++DE + + + +
Sbjct: 123 FSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVI 182
Query: 1234 LRQHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLEN 1279
+ + T++ + + + +L G I ++LL+N
Sbjct: 183 QKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 109 bits (273), Expect = 4e-27
Identities = 49/211 (23%), Positives = 85/211 (40%), Gaps = 16/211 (7%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------KAYVAQ 687
+R+++L+V G + + G G GK++ L I G G + + +V
Sbjct: 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP 78
Query: 688 SPWIQSGNIEDNILFGK------PMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGIN 741
+ + L+ K +V ++ E+ T + R
Sbjct: 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPR 138
Query: 742 -LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL-LGLLRSKTVIYVTH 799
LSGGQ+QR+ + RA+ + ++L D+P S +DA + E+ L T IYVTH
Sbjct: 139 ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTH 198
Query: 800 QVEFLPA-ADLILVMKDGKITQAGKYNDILN 829
D I VM G + Q G +++ +
Sbjct: 199 DQVEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 102 bits (256), Expect = 7e-25
Identities = 47/247 (19%), Positives = 108/247 (43%), Gaps = 28/247 (11%)
Query: 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIV 1114
V ++++ + +R ++ G ++G +G GK+T ++ + + EP+ G+I
Sbjct: 4 VRLVDVWKVFGEVT--AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIY 61
Query: 1115 IDGINISSIGLHDLR----SRLSIIPQDPTMFE--GTVRNNLDPLEEYK------DEEIW 1162
I ++ ++++ Q ++ N PL+ K D+ +
Sbjct: 62 IGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVR 121
Query: 1163 EALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASV 1222
E + L + + K +L S GQRQ V LGR +++K +V ++DE +++
Sbjct: 122 EVAELLGLTELLNRKPREL-----------SGGQRQRVALGRAIVRKPQVFLMDEPLSNL 170
Query: 1223 DTATDNLIQQTLR--QHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLEN 1279
D ++ L+ Q T I + H + D + +++ G++++ SP ++ +
Sbjct: 171 DAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230
Query: 1280 KSSSFAQ 1286
+++F
Sbjct: 231 PANTFVA 237
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 107 bits (268), Expect = 2e-26
Identities = 60/217 (27%), Positives = 93/217 (42%), Gaps = 26/217 (11%)
Query: 631 NNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK-------- 682
+DINL + G V G G GKS+LL I G SG L + +
Sbjct: 12 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE 71
Query: 683 ---AYVAQSPWIQSG-NIEDNILFG----KPMDREKYDRVLEACSLKKDLEILSFGDQTV 734
V QS + ++ +N+ FG RV + E+L +
Sbjct: 72 RGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQV------AEVLQLAH--L 123
Query: 735 IGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL-LGLLRSKT 793
+ + LSGGQ+QR+ I R L + ++L D+P S +DA + E+ L +T
Sbjct: 124 LDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRT 183
Query: 794 VIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDILN 829
+IYVTH AD I+V+ G++ Q GK ++ +
Sbjct: 184 MIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 220
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 99.6 bits (248), Expect = 7e-24
Identities = 46/243 (18%), Positives = 95/243 (39%), Gaps = 26/243 (10%)
Query: 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIV 1114
V + N+ + + V + + G VG +G GKSTL++ + + T+G++
Sbjct: 1 VQLQNVTKAWGEVV--VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 58
Query: 1115 IDGINISSIGLHDLRSRLSIIPQDPTMFE--GTVRNNLDPLEEYK------DEEIWEALD 1166
I ++ + ++ Q ++ N L+ ++ + + +
Sbjct: 59 IGEKRMN--DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAE 116
Query: 1167 KCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTAT 1226
QL LD + S GQRQ V +GR L+ + V +LDE +++D A
Sbjct: 117 VLQLAH-------LLDRKPKA----LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAAL 165
Query: 1227 DNLIQQTLR--QHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENKSSS 1283
++ + T+I + H + +D +++L G + + P +L +
Sbjct: 166 RVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADR 225
Query: 1284 FAQ 1286
F
Sbjct: 226 FVA 228
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 105 bits (262), Expect = 4e-26
Identities = 41/197 (20%), Positives = 86/197 (43%), Gaps = 26/197 (13%)
Query: 1059 NLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGI 1118
+L V Y VL +T T G G G GK+TL++T+ ++P GEI+ +G+
Sbjct: 7 DLSVGYDKP---VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGV 63
Query: 1119 NISSIGLHDLRSRLSIIPQDPTMFEG-TVRNNLDPLEEY-----KDEEIWEALDKCQLGD 1172
I ++ ++ +P++ + +V + L + EI +AL+ ++ D
Sbjct: 64 PI-----TKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD 118
Query: 1173 EVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQ 1232
+ S G + V L LL +++ VLD+ ++D + + + +
Sbjct: 119 LKK------------KLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLK 166
Query: 1233 TLRQHFSDCTVITIAHR 1249
++ + + ++ I+ R
Sbjct: 167 SILEILKEKGIVIISSR 183
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 101 bits (253), Expect = 7e-25
Identities = 43/208 (20%), Positives = 88/208 (42%), Gaps = 26/208 (12%)
Query: 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 676
+EI D + +D P L I + + G V G G GK++LL I + + G +
Sbjct: 3 LEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 58
Query: 677 KLCGTK--------AYVAQSP-WIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEIL 727
G ++ + + ++ED + + K ++ + ++ L
Sbjct: 59 IYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNK-------NEIMDAL 111
Query: 728 SFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLG 787
+ + ++ LS G +R+Q+A L +A+IY+ DDP A+D + + K +L
Sbjct: 112 ESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKS-ILE 170
Query: 788 LLRSK--TVIYVTHQVEFLPAADLILVM 813
+L+ K +I ++ + D+ +
Sbjct: 171 ILKEKGIVIISSREELSY---CDVNENL 195
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 105 bits (264), Expect = 6e-26
Identities = 46/235 (19%), Positives = 107/235 (45%), Gaps = 10/235 (4%)
Query: 1053 GEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGE 1112
G V + +L+ R +L+G++ G G++G G+GK+T ++ + +++P++G
Sbjct: 1 GAVVVKDLRKRIGKKE--ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGI 58
Query: 1113 IVIDGINISSIGLHDLRSRLSIIPQDPTMFEG-TVRNNLDPLEEYKDEEIWEALDKCQLG 1171
+ + G N+ H++R +S +P++ + L + + E + +
Sbjct: 59 VTVFGKNV-VEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERA 117
Query: 1172 DEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQ 1231
E+ K+ RV+ +S G + + + R L+ ++ +LDE T+ +D ++
Sbjct: 118 TEIAGLGEKIKDRVST----YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVR 173
Query: 1232 QTLRQHFSDCTVITIAHRITSVID--SDMVLLLSHGIIEEYDSPTKLLENKSSSF 1284
+ L+Q + I ++ ++ D + L+ +G I E + +L E +
Sbjct: 174 KILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQN 228
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 100 bits (250), Expect = 3e-24
Identities = 39/213 (18%), Positives = 83/213 (38%), Gaps = 18/213 (8%)
Query: 631 NNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK-------- 682
L+ I+ ++ G + G G+GK++ L I + SG + + G
Sbjct: 14 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEV 73
Query: 683 ----AYVAQSPWIQSG-NIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGE 737
+Y+ + + + F + E +++ EI G++ I +
Sbjct: 74 RKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEM--VERATEIAGLGEK--IKD 129
Query: 738 RGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYV 797
R S G +++ IARAL + + + D+P S +D + K + T++
Sbjct: 130 RVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVS 189
Query: 798 THQVEFLPA-ADLILVMKDGKITQAGKYNDILN 829
+H + + D I ++ +G I + G ++
Sbjct: 190 SHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 222
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 101 bits (252), Expect = 2e-24
Identities = 59/216 (27%), Positives = 93/216 (43%), Gaps = 29/216 (13%)
Query: 632 NPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT---------- 681
N +L +++LKV G + G G+GK+ L I G SG + L G
Sbjct: 13 NFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKH 72
Query: 682 -KAYVAQSP-----WIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVI 735
A+V Q+ N+E + K D ++ ++ L+
Sbjct: 73 DIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLD---------- 122
Query: 736 GERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL-LGLLRSKTV 794
+ LSGG++QR+ +ARAL + I L D+P SA+D T + + + L TV
Sbjct: 123 -RNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTV 181
Query: 795 IYVTHQVEF-LPAADLILVMKDGKITQAGKYNDILN 829
+++TH AD I V+ DGK+ Q GK +I
Sbjct: 182 LHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFE 217
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 95.5 bits (237), Expect = 1e-22
Identities = 45/240 (18%), Positives = 98/240 (40%), Gaps = 24/240 (10%)
Query: 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIV 1114
++I +L ++ L L+ G I+G TG+GK+ ++ + P +G I+
Sbjct: 2 IEIESLSRKWKNF---SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL 58
Query: 1115 IDGINISSIGLHDLRSRLSIIPQDPTMFEG-----TVRNNLDPLEEYKDEEIWEALDKCQ 1169
+DG +++ L + ++ + Q+ ++F + + + + + + +
Sbjct: 59 LDGKDVT--DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLK 116
Query: 1170 LGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNL 1229
+ LD S G++Q V L R L+ K+L+LDE +++D T
Sbjct: 117 IEH-------LLDRNPLT----LSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQEN 165
Query: 1230 IQQTLR--QHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENKSSSFAQ 1286
++ L + TV+ I H T +D + ++ G + + P ++ E
Sbjct: 166 AREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRVA 225
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 97.4 bits (242), Expect = 4e-23
Identities = 54/215 (25%), Positives = 97/215 (45%), Gaps = 14/215 (6%)
Query: 1081 GGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDPT 1140
G ++G TG+GKS ++ + IV+P GE+ ++G +I+ L R + +PQD
Sbjct: 23 GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITP--LPPERRGIGFVPQDYA 80
Query: 1141 MFEGTVR--NNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQ 1198
+F N L + E + + E LD + S G+RQ
Sbjct: 81 LFPHLSVYRNIAYGLRNVERVERDRRVREMA---EKLGIAHLLDRKPAR----LSGGERQ 133
Query: 1199 LVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLR--QHFSDCTVITIAHRITSVID- 1255
V L R L+ + ++L+LDE ++VD T ++ + LR Q D ++ + H +
Sbjct: 134 RVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAML 193
Query: 1256 SDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLVAE 1290
+D V ++ +G I E +L K+ A+ ++
Sbjct: 194 ADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFLSA 228
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 93.2 bits (231), Expect = 1e-21
Identities = 53/214 (24%), Positives = 91/214 (42%), Gaps = 25/214 (11%)
Query: 637 DINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK-----------AYV 685
+++ ++ + G G+GKS L I G V G ++L G +V
Sbjct: 17 NVDFEM-GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFV 75
Query: 686 AQSP-WIQSGNIEDNILFGKPM--DREKYDRVLEACSLKKDLEILSFGDQTVIGERGINL 742
Q ++ NI +G E+ RV E G ++ + L
Sbjct: 76 PQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEK--------LGIAHLLDRKPARL 127
Query: 743 SGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL-LGLLRSKTVIYVTHQV 801
SGG++QR+ +ARAL + L D+P SAVD T L +E+ + +++VTH +
Sbjct: 128 SGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDL 187
Query: 802 EFLPA-ADLILVMKDGKITQAGKYNDILNSGTDF 834
AD + VM +G+I + GK ++ ++
Sbjct: 188 IEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGE 221
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 94.0 bits (233), Expect = 8e-22
Identities = 47/241 (19%), Positives = 98/241 (40%), Gaps = 13/241 (5%)
Query: 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEI 1113
+ + N+ + + L + G + GI+G +G+GK+T ++ + + P+ GE+
Sbjct: 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
Query: 1114 VIDGINISSIGLHDLRSR---LSIIPQDPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQL 1170
D ++S G + + ++ Q ++ NL E + K ++
Sbjct: 63 YFDDRLVASNGKLIVPPEDRKIGMVFQTWALY-----PNLTAFENIAFPLTNMKMSKEEI 117
Query: 1171 GDEVRN--KEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDN 1228
V K + + S Q+Q V L R L+K +L+LDE +++D +
Sbjct: 118 RKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRD 177
Query: 1229 LIQQTLR--QHFSDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENKSSSFA 1285
+ ++ Q T++ ++H + +D V +L G + + P L +N S
Sbjct: 178 SARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQV 237
Query: 1286 Q 1286
Sbjct: 238 A 238
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 93.2 bits (231), Expect = 1e-21
Identities = 56/218 (25%), Positives = 90/218 (41%), Gaps = 31/218 (14%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------------ 682
L ++N+ + +G R + G G+GK++ + I G +G L
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 683 ----AYVAQS----PWIQSGNIEDNILFGKPMDREK-YDRVLEACSLKKDLEILSFGDQT 733
V Q+ P + + L M +E+ RV E +IL
Sbjct: 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEV------AKILDIHHVL 134
Query: 734 VIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL-LGLLRSK 792
R LSG Q+QR+ +ARAL +D + L D+PFS +DA V +
Sbjct: 135 NHFPR--ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGV 192
Query: 793 TVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDILN 829
T++ V+H + A AD + V+ GK+ Q GK D+ +
Sbjct: 193 TLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 79.6 bits (195), Expect = 2e-17
Identities = 17/180 (9%), Positives = 47/180 (26%), Gaps = 16/180 (8%)
Query: 646 MRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGNIEDNILFGKP 705
M++ + G G GK++L+ I+ + K + + ++G K
Sbjct: 1 MKIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDP---ETKKRTGFRIITTEGKKK 57
Query: 706 MDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLF 765
+ K+ + + + A + +
Sbjct: 58 IFSSKFFTSKKLV------------GSYGVNVQYFEELAIPILERAYREAKKDRRKVIII 105
Query: 766 DDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYN 825
D+ ++ + + + V+ + P I + + + N
Sbjct: 106 DEI-GKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPEN 164
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 74.3 bits (181), Expect = 1e-15
Identities = 19/193 (9%), Positives = 44/193 (22%), Gaps = 28/193 (14%)
Query: 1083 MKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDPTMF 1142
MK I G G GK+TL++ + + A + + ++ +
Sbjct: 1 MKIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFS 60
Query: 1143 EGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCL 1202
+ + + +E
Sbjct: 61 SKFFTSKKLVGSYGVNVQYFE----------------------------ELAIPILERAY 92
Query: 1203 GRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLL 1262
+ KV+++DE + H + V+ + L
Sbjct: 93 REAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRL 152
Query: 1263 SHGIIEEYDSPTK 1275
++ E +
Sbjct: 153 PGAVLIELTPENR 165
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 59.9 bits (143), Expect = 6e-10
Identities = 20/299 (6%), Positives = 89/299 (29%), Gaps = 2/299 (0%)
Query: 299 WKEIVFTAILALLYTLANYVGPYLIDTFVQYLNGEREFKNEGYVLVSTFFVAKIVECLAQ 358
++ I +L ++ L+ + G+ + ++ + + + +
Sbjct: 15 KAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSY 74
Query: 359 RHWMFRLQVAGIKMRSVLVSMVYNKGLTLSCQAKQSYTSGEIINFMTVDAERIGDFGWYM 418
V+G + ++ + + + T + + +
Sbjct: 75 ISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGAL 134
Query: 419 HDPWLVILQVSLALLILYKNLGLASIAALFATVLIMLTNFPLGRLQENFQDKLMGSKDKR 478
+ ++++ SI + ++ + + + + + + +
Sbjct: 135 ITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQV 194
Query: 479 MKVTSEILRNMRILKLQGWEMKFLSKIIELRKIEAGWLKKFLYTGAMTSFVFWGAPTFVS 538
++L+ + + + G + + ++ K + +++ + +
Sbjct: 195 TTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLAL 254
Query: 539 --VATFGACMLLGIPLESGKILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIASFL 595
V + + L +G I ++ L P+ +L + + + + + + L
Sbjct: 255 AFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAIL 313
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.7 bits (138), Expect = 6e-10
Identities = 19/170 (11%), Positives = 45/170 (26%), Gaps = 7/170 (4%)
Query: 1086 GIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDPTMFEGT 1145
+ G G GK+TLI +++ + + G + + +
Sbjct: 5 FLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRV 64
Query: 1146 VRNNLDPL------EEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQL 1199
+ D +E L L + + V + + +
Sbjct: 65 GLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLF 124
Query: 1200 VCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHR 1249
+ R L ++L L+++ + +T +R
Sbjct: 125 IQAVRQTLSTPGTIILGTIPVPKGKPLA-LVEEIRNRKDVKVFNVTKENR 173
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 54.5 bits (129), Expect = 3e-08
Identities = 39/306 (12%), Positives = 96/306 (31%), Gaps = 9/306 (2%)
Query: 299 WKEIVFTAILALLYTLANYVGPYLIDTFV------QYLNGEREFKNEGYVLVSTFFVAKI 352
I T I+ ++ + P LI + L + + + + F+ I
Sbjct: 13 KYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVI 72
Query: 353 VECLAQRHWMFRLQVAGIKM-RSVLVSMVYNKGLTLSCQAKQSYTSGEIINFMTVDAERI 411
V + + Q K+ + + + + + I + +
Sbjct: 73 VRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTK 132
Query: 412 GDFGWYMHDPWLVILQVSLALLILYKNLGLASIAALFATVLIMLTNFPLGRLQENFQDKL 471
+ + WL + + +AL I++ ++AALF +LT + +
Sbjct: 133 DFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRER 192
Query: 472 MGSKDKRMKVTSEILRNMRILKLQGWEMKFLSKIIELRKIEAGWLKKFLYTGAMTSFVFW 531
+ + E ++ + ++K E + K A +
Sbjct: 193 SQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAIN 252
Query: 532 GAPTFVSVAT--FGACMLLGIPLESGKILSALATFRILQEPIYNLPDTISMIIQTKVSLD 589
+ GA + + + G + + + +L P+ L + + + Q+ S+D
Sbjct: 253 TVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMD 312
Query: 590 RIASFL 595
R+ +
Sbjct: 313 RVFQLI 318
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1300 | |||
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 99.97 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.95 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.95 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.65 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.63 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.48 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.34 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.29 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.25 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.22 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.07 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.98 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 98.73 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.69 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 98.69 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.69 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.48 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 97.23 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 96.91 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.91 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 96.8 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.7 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.41 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 96.38 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.16 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.89 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 95.78 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.7 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 95.54 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.47 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 95.4 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 95.37 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.23 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 95.2 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.19 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.16 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.15 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 95.15 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 95.09 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.05 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 95.02 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 95.01 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 94.83 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 94.77 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.74 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 94.6 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 94.6 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 94.55 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 94.48 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 94.41 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 94.37 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 94.31 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.31 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 94.27 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.24 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 94.17 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 94.16 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 94.12 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 94.05 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 93.88 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 93.87 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 93.79 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 93.73 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 93.71 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 93.71 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 93.7 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 93.69 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 93.67 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 93.65 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 93.58 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 93.54 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 93.48 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 93.47 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 93.45 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 93.43 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 93.42 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 93.4 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 93.17 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 93.15 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 93.1 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 92.99 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 92.97 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 92.88 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 92.88 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 92.85 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 92.77 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 92.66 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 92.64 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 92.63 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 92.62 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 92.6 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 92.54 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 92.49 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 92.47 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 92.41 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 92.27 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.19 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 92.13 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 92.09 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 92.08 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 91.99 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 91.91 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 91.9 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 91.82 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 91.76 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 91.69 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 91.63 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 91.59 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 91.57 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 91.56 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 91.54 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 91.46 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 91.42 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 91.39 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 91.38 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 91.31 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 91.2 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 91.19 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 91.13 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 91.1 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 91.09 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 91.01 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 90.9 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 90.9 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 90.86 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 90.75 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 90.65 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 90.61 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 90.6 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 90.57 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 90.55 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 90.54 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 90.49 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 90.49 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 90.44 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 90.32 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 90.32 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 90.29 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 90.22 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 90.22 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 90.16 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 90.13 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 90.12 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 90.12 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 90.05 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 90.01 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 89.96 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 89.95 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 89.94 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 89.9 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 89.86 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 89.85 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 89.83 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 89.81 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 89.71 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 89.65 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 89.64 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 89.64 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 89.64 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 89.61 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 89.59 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 89.49 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 89.46 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 89.46 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 89.39 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 89.24 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 89.2 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 89.15 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 89.08 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 89.06 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 89.04 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 88.95 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 88.93 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 88.89 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 88.81 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 88.81 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 88.72 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 88.63 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 88.49 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 88.36 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 88.31 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 88.28 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 88.25 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 88.23 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 88.21 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 88.13 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 88.12 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 88.11 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 88.08 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 87.97 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 87.79 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 87.73 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 87.61 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 87.51 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 87.5 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 87.49 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 87.45 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 87.35 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 87.33 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 87.24 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 87.22 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 87.16 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 86.93 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 86.85 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 86.72 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 86.67 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 86.66 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 86.64 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 86.63 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 86.57 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 86.48 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 86.37 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 86.32 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 86.31 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 86.24 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 86.24 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 86.12 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 86.1 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 86.1 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 86.08 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 86.06 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 86.0 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 86.0 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 85.91 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 85.9 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 85.83 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 85.82 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 85.78 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 85.74 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 85.64 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 85.62 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 85.57 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 85.51 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 85.5 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 85.5 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 85.47 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 85.46 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 85.44 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 85.35 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 85.33 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 85.31 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 85.2 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 85.17 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 85.16 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 85.13 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 85.09 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 85.06 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 85.06 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 85.05 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 85.05 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 85.04 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 85.03 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 85.03 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 85.0 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 84.93 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 84.93 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 84.84 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 84.82 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 84.76 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 84.74 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 84.74 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 84.72 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 84.65 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 84.55 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 84.52 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 84.49 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 84.46 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 84.43 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 84.41 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 84.39 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 84.31 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 84.19 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 84.18 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 84.18 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 84.07 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 84.01 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 83.92 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 83.92 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 83.9 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 83.89 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 83.86 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 83.85 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 83.77 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 83.72 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 83.68 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 83.63 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 83.58 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 83.55 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 83.54 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 83.43 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 83.43 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 83.42 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 83.42 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 83.41 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 83.4 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 83.3 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 83.28 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 83.26 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 83.23 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 83.06 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 83.04 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 83.04 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 83.04 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 83.0 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 82.98 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 82.9 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 82.86 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 82.75 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 82.75 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 82.64 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 82.63 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 82.51 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 82.51 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 82.47 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 82.44 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 82.43 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 82.4 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 82.4 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 82.35 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 82.34 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 82.28 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 82.28 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 82.27 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 82.22 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 82.2 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 82.19 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 82.14 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 82.1 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 82.07 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 82.02 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 82.02 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 82.01 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 81.99 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 81.94 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 81.88 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 81.62 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 81.6 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 81.6 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 81.53 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 81.49 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 81.46 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 81.45 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 81.44 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 81.38 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 81.37 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 81.37 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 81.33 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 81.28 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 81.25 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 81.19 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 81.17 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 81.16 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 81.11 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 81.1 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 80.99 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 80.69 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 80.61 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 80.57 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 80.56 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 80.54 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 80.47 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 80.4 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 80.36 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 80.31 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 80.29 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 80.23 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 80.1 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 80.07 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 80.06 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 80.02 |
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=466.56 Aligned_cols=237 Identities=28% Similarity=0.479 Sum_probs=229.1
Q ss_pred EEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCE
Q ss_conf 08998424564899894113115996489399999799985999999995177999526999896468889777730218
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLS 1133 (1300)
Q Consensus 1054 ~I~~~nl~~~Y~~~~~~vL~~is~~i~~GekigIVGrTGsGKSTLl~~L~rl~~p~~G~I~Idg~di~~i~l~~lR~~i~ 1133 (1300)
+|+|+||+++|.++.+++|+||||+|++||++||||+||||||||+++|.|+++|++|+|.|||+|++.++.+++|++++
T Consensus 1 eI~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (241)
T d2pmka1 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 80 (241)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred CEEEEEEEEEECCCCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEEE
T ss_conf 92999999990899960374248998499999999999998999999997357888889999999944002465535288
Q ss_pred EECCCCCCCCCCHHHHCCCCC-CCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCE
Q ss_conf 881788778654787138798-8999999999998399678972107876312369998894699999999987159988
Q 000755 1134 IIPQDPTMFEGTVRNNLDPLE-EYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKV 1212 (1300)
Q Consensus 1134 iIpQdp~lF~gTiR~NLdp~~-~~sd~ei~~aL~~~~L~~~i~~~~~~Ld~~v~e~g~nlS~GQrQll~LARaLL~~~~I 1212 (1300)
++||+|.+|++||++|+.... ..++++++++++.+++.+++..+|.++++.++++|.+||||||||+|||||++++|+|
T Consensus 81 ~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~i 160 (241)
T d2pmka1 81 VVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKI 160 (241)
T ss_dssp EECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSE
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCH
T ss_conf 98244655784000352235755438889999999755788876320134432787886698898987544344416513
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHH
Q ss_conf 998578769899999999999998269927999927902444048899994987978659546872189769999999
Q 000755 1213 LVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLVAE 1290 (1300)
Q Consensus 1213 LiLDEaTa~lD~~Td~~Iq~~i~~~f~~~TvI~IaHrl~ti~~~D~Vlvl~~G~i~e~g~p~~Ll~~~~s~f~~lv~~ 1290 (1300)
|+||||||++|+.|+..|.+.|++..+++|+|+||||++++..||+|+||++|+|+|+|+|++|++++++.|.+|++.
T Consensus 161 lilDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~~ 238 (241)
T d2pmka1 161 LIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 238 (241)
T ss_dssp EEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHHH
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHH
T ss_conf 556477655598999999999999858998999978899998499999998999999889999982998789999998
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=463.80 Aligned_cols=239 Identities=29% Similarity=0.488 Sum_probs=229.4
Q ss_pred CCCCEEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHH
Q ss_conf 99750899842456489989411311599648939999979998599999999517799952699989646888977773
Q 000755 1050 PTHGEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLR 1129 (1300)
Q Consensus 1050 p~~g~I~~~nl~~~Y~~~~~~vL~~is~~i~~GekigIVGrTGsGKSTLl~~L~rl~~p~~G~I~Idg~di~~i~l~~lR 1129 (1300)
..+|.|+|+||+++|.+..+++|+||||+|++||++||||+||||||||+++|.|+++|++|+|.+||.|++.++...+|
T Consensus 12 ~~~g~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr 91 (255)
T d2hyda1 12 IKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLR 91 (255)
T ss_dssp CCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHH
T ss_pred CCCCEEEEEEEEEEECCCCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHHHHH
T ss_conf 77887999988999599997606443899839989999889998099999999712786300015399875307888863
Q ss_pred CCCEEECCCCCCCCCCHHHHCCC-CCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 02188817887786547871387-98899999999999839967897210787631236999889469999999998715
Q 000755 1130 SRLSIIPQDPTMFEGTVRNNLDP-LEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLK 1208 (1300)
Q Consensus 1130 ~~i~iIpQdp~lF~gTiR~NLdp-~~~~sd~ei~~aL~~~~L~~~i~~~~~~Ld~~v~e~g~nlS~GQrQll~LARaLL~ 1208 (1300)
++++++||+|.+|+||||+|+.. ....+|++++++++.+++.+++..+|.|+|+.++++|.+||+|||||+|||||+++
T Consensus 92 ~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~ 171 (255)
T d2hyda1 92 NQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN 171 (255)
T ss_dssp HTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred HEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 41456510156899879999851586799999999999969799997362420103338889849999999999999855
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHH
Q ss_conf 99889985787698999999999999982699279999279024440488999949879786595468721897699999
Q 000755 1209 KSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLV 1288 (1300)
Q Consensus 1209 ~~~ILiLDEaTa~lD~~Td~~Iq~~i~~~f~~~TvI~IaHrl~ti~~~D~Vlvl~~G~i~e~g~p~~Ll~~~~s~f~~lv 1288 (1300)
+|+|++||||||++|.+|+..|.+.|++..+++|+|+||||++.+..||+|++|++|+|+|.|+|++|+++ ++.|++|+
T Consensus 172 ~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~-~~~y~~l~ 250 (255)
T d2hyda1 172 NPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK-QGAYEHLY 250 (255)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHT-TSHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CCHHHHHH
T ss_conf 99899983765447977999999999987538889999689999985999999989999998899999868-84999999
Q ss_pred H
Q ss_conf 9
Q 000755 1289 A 1289 (1300)
Q Consensus 1289 ~ 1289 (1300)
+
T Consensus 251 ~ 251 (255)
T d2hyda1 251 S 251 (255)
T ss_dssp T
T ss_pred H
T ss_conf 9
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=456.73 Aligned_cols=238 Identities=33% Similarity=0.528 Sum_probs=228.2
Q ss_pred CCCEEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHC
Q ss_conf 97508998424564899894113115996489399999799985999999995177999526999896468889777730
Q 000755 1051 THGEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS 1130 (1300)
Q Consensus 1051 ~~g~I~~~nl~~~Y~~~~~~vL~~is~~i~~GekigIVGrTGsGKSTLl~~L~rl~~p~~G~I~Idg~di~~i~l~~lR~ 1130 (1300)
..|.|+|+||+++|.....++|+|+||+|++||++||||+||||||||+++|.|+++|++|+|.+||.|++.++..++|+
T Consensus 10 ~~g~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 89 (253)
T d3b60a1 10 ATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRN 89 (253)
T ss_dssp CCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHH
T ss_pred CCEEEEEEEEEEEECCCCCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHH
T ss_conf 83079999889992999976353328998599999999999985999999986216888468987880121110665420
Q ss_pred CCEEECCCCCCCCCCHHHHCCC--CCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 2188817887786547871387--98899999999999839967897210787631236999889469999999998715
Q 000755 1131 RLSIIPQDPTMFEGTVRNNLDP--LEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLK 1208 (1300)
Q Consensus 1131 ~i~iIpQdp~lF~gTiR~NLdp--~~~~sd~ei~~aL~~~~L~~~i~~~~~~Ld~~v~e~g~nlS~GQrQll~LARaLL~ 1208 (1300)
+++++||+|.+|++|+++|+.. ...+++++++++++.+++.+++..+|.|||+.+++.|.+||+|||||+||||||++
T Consensus 90 ~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~ 169 (253)
T d3b60a1 90 QVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR 169 (253)
T ss_dssp TEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 68799502544786202433205722089999999999981799997355441014348889849999999999999954
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHH
Q ss_conf 99889985787698999999999999982699279999279024440488999949879786595468721897699999
Q 000755 1209 KSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLV 1288 (1300)
Q Consensus 1209 ~~~ILiLDEaTa~lD~~Td~~Iq~~i~~~f~~~TvI~IaHrl~ti~~~D~Vlvl~~G~i~e~g~p~~Ll~~~~s~f~~lv 1288 (1300)
+|+||+||||||++|++|+..|.+.|++..+++|+|+||||++.+..||+|+||++|+|+|.|+|++|+++ ++.|++|+
T Consensus 170 ~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~-~~~y~~l~ 248 (253)
T d3b60a1 170 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ-HGVYAQLH 248 (253)
T ss_dssp CCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHH-TSSHHHHH
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CCHHHHHH
T ss_conf 99889951644458988999999999875227889999887999985999999989999998899999868-93999999
Q ss_pred H
Q ss_conf 9
Q 000755 1289 A 1289 (1300)
Q Consensus 1289 ~ 1289 (1300)
+
T Consensus 249 ~ 249 (253)
T d3b60a1 249 K 249 (253)
T ss_dssp H
T ss_pred H
T ss_conf 9
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=444.02 Aligned_cols=239 Identities=30% Similarity=0.431 Sum_probs=224.8
Q ss_pred CCCCEEEEEEEEEEECCC-CCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHH
Q ss_conf 997508998424564899-8941131159964893999997999859999999951779995269998964688897777
Q 000755 1050 PTHGEVDILNLQVRYAPH-LPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDL 1128 (1300)
Q Consensus 1050 p~~g~I~~~nl~~~Y~~~-~~~vL~~is~~i~~GekigIVGrTGsGKSTLl~~L~rl~~p~~G~I~Idg~di~~i~l~~l 1128 (1300)
+..|.|+|+||+++|+.. ..++|+|+||+|++||++||||+||||||||+++|.|+++|++|+|.+||+|+++++...+
T Consensus 7 ~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~ 86 (251)
T d1jj7a_ 7 HLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYL 86 (251)
T ss_dssp CCCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHH
T ss_pred CCCCEEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHHH
T ss_conf 65336999998998899999976744389984998999999999849999999861437876899889985311013788
Q ss_pred HCCCEEECCCCCCCCCCHHHHCCCC--CCCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 3021888178877865478713879--88999999999998399678972107876312369998894699999999987
Q 000755 1129 RSRLSIIPQDPTMFEGTVRNNLDPL--EEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVL 1206 (1300)
Q Consensus 1129 R~~i~iIpQdp~lF~gTiR~NLdp~--~~~sd~ei~~aL~~~~L~~~i~~~~~~Ld~~v~e~g~nlS~GQrQll~LARaL 1206 (1300)
|++++++||+|.+|++||++|+... ...++++++++.+++++.+.+..+|.++++.+++.|.+||||||||++||||+
T Consensus 87 r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal 166 (251)
T d1jj7a_ 87 HRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARAL 166 (251)
T ss_dssp HHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEEEECC
T ss_conf 87765404565002763465545421013027889999999989999985612111367516766895470489986044
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCHHHHHCCCEEEEEECCEEEEECCHHHHHHCCCCHH
Q ss_conf 159988998578769899999999999998269--927999927902444048899994987978659546872189769
Q 000755 1207 LKKSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSF 1284 (1300)
Q Consensus 1207 L~~~~ILiLDEaTa~lD~~Td~~Iq~~i~~~f~--~~TvI~IaHrl~ti~~~D~Vlvl~~G~i~e~g~p~~Ll~~~~s~f 1284 (1300)
+++|+|++||||||++|..|+..|++.|++..+ ++|+|+||||++.+..||||+||++|+|+|.|+|++|+++ ++.|
T Consensus 167 ~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~-~~~y 245 (251)
T d1jj7a_ 167 IRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEK-KGCY 245 (251)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH-TSHH
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CCHH
T ss_conf 568707871675765685368999999999765069899999597999985999999989999998899999859-7588
Q ss_pred HHHHH
Q ss_conf 99999
Q 000755 1285 AQLVA 1289 (1300)
Q Consensus 1285 ~~lv~ 1289 (1300)
++|++
T Consensus 246 ~~l~~ 250 (251)
T d1jj7a_ 246 WAMVQ 250 (251)
T ss_dssp HHHHC
T ss_pred HHHHC
T ss_conf 99962
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=451.39 Aligned_cols=235 Identities=32% Similarity=0.555 Sum_probs=224.0
Q ss_pred EEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCE
Q ss_conf 08998424564899894113115996489399999799985999999995177999526999896468889777730218
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLS 1133 (1300)
Q Consensus 1054 ~I~~~nl~~~Y~~~~~~vL~~is~~i~~GekigIVGrTGsGKSTLl~~L~rl~~p~~G~I~Idg~di~~i~l~~lR~~i~ 1133 (1300)
.|+++||+++|.+. +++|+||||+|++||++||||+||||||||+++|.|+++|++|+|.+||.|+++++.+.+|++++
T Consensus 1 mle~knvsf~Y~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 79 (242)
T d1mv5a_ 1 MLSARHVDFAYDDS-EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (242)
T ss_dssp CEEEEEEEECSSSS-SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred CEEEEEEEEECCCC-CCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHEE
T ss_conf 97999889987999-84142258998599999999999997999999999960989877988998844246788874367
Q ss_pred EECCCCCCCCCCHHHHCCCC--CCCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 88178877865478713879--8899999999999839967897210787631236999889469999999998715998
Q 000755 1134 IIPQDPTMFEGTVRNNLDPL--EEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSK 1211 (1300)
Q Consensus 1134 iIpQdp~lF~gTiR~NLdp~--~~~sd~ei~~aL~~~~L~~~i~~~~~~Ld~~v~e~g~nlS~GQrQll~LARaLL~~~~ 1211 (1300)
+|||||.+|++|+|+|+... ...+++++|++++.+++.+++..+|.++++.++++|.+||||||||+|+||||+++|+
T Consensus 80 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ 159 (242)
T d1mv5a_ 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (242)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EECCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 97566545785345430124455542356778999997555420374210152368789879999999999999852998
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHH
Q ss_conf 8998578769899999999999998269927999927902444048899994987978659546872189769999999
Q 000755 1212 VLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLVAE 1290 (1300)
Q Consensus 1212 ILiLDEaTa~lD~~Td~~Iq~~i~~~f~~~TvI~IaHrl~ti~~~D~Vlvl~~G~i~e~g~p~~Ll~~~~s~f~~lv~~ 1290 (1300)
||+||||||++|..++..|++.|++..+++|+|+|+||++++..||+|+||++|+|+|.|+|++|+++ ++.|++|+++
T Consensus 160 ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~-~~~y~~l~~~ 237 (242)
T d1mv5a_ 160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSE 237 (242)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH-CHHHHHHHHC
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CHHHHHHHHH
T ss_conf 99965886556988999998878887179989999787999984999999989999999999999868-9699999999
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=432.99 Aligned_cols=230 Identities=30% Similarity=0.464 Sum_probs=214.0
Q ss_pred CCCCCCCEEEEEEEEEEECCCCCCCCEECCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE-------
Q ss_conf 9999853099996899834999999300111687389399998479999589999973126588637997493-------
Q 000755 609 PRGSSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------- 681 (1300)
Q Consensus 609 ~~~~~~~~I~i~~~~fsw~~~~~~~~L~~inl~i~~G~~vaIvG~~GSGKSTLL~~ilGe~~~~~G~I~v~g~------- 681 (1300)
|.....+.|+++|++|+|+. .+.++|+|+||+|++|+++||+|++|||||||+++|+|.+++++|+|.++|.
T Consensus 9 pl~~~~g~I~~~nvsf~Y~~-~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~ 87 (255)
T d2hyda1 9 PIEIKQGRIDIDHVSFQYND-NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLT 87 (255)
T ss_dssp CCCCCSCCEEEEEEEECSCS-SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCH
T ss_pred CCCCCCCEEEEEEEEEEECC-CCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCH
T ss_conf 77777887999988999599-99760644389983998999988999809999999971278630001539987530788
Q ss_pred ------EEEEECCCCCCCCCHHHHHHCCCC-CCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf ------899815886888878899842999-9999999999982525788641589864236788878978999999999
Q 000755 682 ------KAYVAQSPWIQSGNIEDNILFGKP-MDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIAR 754 (1300)
Q Consensus 682 ------iayv~Q~pwi~~gTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~lp~Gd~T~IGe~G~~LSGGQkqRIaLAR 754 (1300)
++||+|+|++|++||+|||.||.+ .+++++.++++.|++.++++.+|+|++|.+|++|.+|||||||||+|||
T Consensus 88 ~~lr~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iAR 167 (255)
T d2hyda1 88 GSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIAR 167 (255)
T ss_dssp HHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHH
T ss_pred HHHHHEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHH
T ss_conf 88634145651015689987999985158679999999999996979999736242010333888984999999999999
Q ss_pred HHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEEECCEEEEECCHHHHHHCCCHH
Q ss_conf 98059988998167778899899999999997602995799990598830239889999398598913868898128617
Q 000755 755 ALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSGTDF 834 (1300)
Q Consensus 755 Aly~~a~IllLDdp~SalD~~t~~~if~~~i~~~l~~kTvIlvTH~l~~l~~aD~Ilvl~~G~I~~~G~~~ell~~~~~~ 834 (1300)
|++++|+|++||||||+||++++..+++ .+..+.+++|+|+|||+++.+..||+|++|++|+|++.|+++|+++.++.|
T Consensus 168 al~~~p~ililDEpts~LD~~t~~~i~~-~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~~~~y 246 (255)
T d2hyda1 168 IFLNNPPILILDEATSALDLESESIIQE-ALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAY 246 (255)
T ss_dssp HHHHCCSEEEEESTTTTCCHHHHHHHHH-HHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTTSHH
T ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHH
T ss_conf 9855998999837654479779999999-999875388899996899999859999999899999988999998688499
Q ss_pred HHHHHH
Q ss_conf 999998
Q 000755 835 MVLVGA 840 (1300)
Q Consensus 835 ~~l~~~ 840 (1300)
.+++..
T Consensus 247 ~~l~~~ 252 (255)
T d2hyda1 247 EHLYSI 252 (255)
T ss_dssp HHHHTT
T ss_pred HHHHHH
T ss_conf 999997
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=425.93 Aligned_cols=224 Identities=30% Similarity=0.439 Sum_probs=209.7
Q ss_pred EEEEEEEEEEECCCCCCCCEECCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE-------------E
Q ss_conf 099996899834999999300111687389399998479999589999973126588637997493-------------8
Q 000755 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------K 682 (1300)
Q Consensus 616 ~I~i~~~~fsw~~~~~~~~L~~inl~i~~G~~vaIvG~~GSGKSTLL~~ilGe~~~~~G~I~v~g~-------------i 682 (1300)
.|+|+|++|+|+. ..+++|+||||++++|+++||+|++|||||||+++|+|.++|++|+|.++|. +
T Consensus 1 eI~~~nvsf~Y~~-~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i 79 (241)
T d2pmka1 1 DITFRNIRFRYKP-DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 79 (241)
T ss_dssp EEEEEEEEEESST-TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CEEEEEEEEEECC-CCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEE
T ss_conf 9299999999089-996037424899849999999999999899999999735788888999999994400246553528
Q ss_pred EEEECCCCCCCCCHHHHHHCCCC-CCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 99815886888878899842999-99999999999825257886415898642367888789789999999999805998
Q 000755 683 AYVAQSPWIQSGNIEDNILFGKP-MDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDAD 761 (1300)
Q Consensus 683 ayv~Q~pwi~~gTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~lp~Gd~T~IGe~G~~LSGGQkqRIaLARAly~~a~ 761 (1300)
+||+|+|++|++||+|||.|+.+ .+.+++.++++.|.+.++++.+|.|++|.+|++|.+|||||||||+||||++++|+
T Consensus 80 ~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ 159 (241)
T d2pmka1 80 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 159 (241)
T ss_dssp EEECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 89824465578400035223575543888999999975578887632013443278788669889898754434441651
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEEECCEEEEECCHHHHHHC-CCHHHHHHHH
Q ss_conf 899816777889989999999999760299579999059883023988999939859891386889812-8617999998
Q 000755 762 IYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNS-GTDFMVLVGA 840 (1300)
Q Consensus 762 IllLDdp~SalD~~t~~~if~~~i~~~l~~kTvIlvTH~l~~l~~aD~Ilvl~~G~I~~~G~~~ell~~-~~~~~~l~~~ 840 (1300)
|+|||||||+||+.++..+++ .+..+.+++|+|+|||+++.+..||+|++|++|+|++.|+++|+++. +..|..++..
T Consensus 160 ililDEpts~LD~~~~~~i~~-~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~~ 238 (241)
T d2pmka1 160 ILIFDEATSALDYESEHVIMR-NMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 238 (241)
T ss_dssp EEEECCCCSCCCHHHHHHHHH-HHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHH-HHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHH
T ss_conf 355647765559899999999-9999858998999978899998499999998999999889999982998789999998
Q ss_pred H
Q ss_conf 8
Q 000755 841 H 841 (1300)
Q Consensus 841 ~ 841 (1300)
+
T Consensus 239 Q 239 (241)
T d2pmka1 239 Q 239 (241)
T ss_dssp H
T ss_pred H
T ss_conf 1
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=422.06 Aligned_cols=226 Identities=30% Similarity=0.450 Sum_probs=212.6
Q ss_pred CCEEEEEEEEEEECCCCCCCCEECCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE------------
Q ss_conf 53099996899834999999300111687389399998479999589999973126588637997493------------
Q 000755 614 ETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------ 681 (1300)
Q Consensus 614 ~~~I~i~~~~fsw~~~~~~~~L~~inl~i~~G~~vaIvG~~GSGKSTLL~~ilGe~~~~~G~I~v~g~------------ 681 (1300)
.+.|+++|++|+|+. .+.++|+|+||+|++|+.+||+|++|||||||+++|+|.++|.+|+|.++|.
T Consensus 11 ~g~I~~~nvsf~Y~~-~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 89 (253)
T d3b60a1 11 TGDLEFRNVTFTYPG-REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRN 89 (253)
T ss_dssp CCCEEEEEEEECSSS-SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHH
T ss_pred CEEEEEEEEEEEECC-CCCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHH
T ss_conf 307999988999299-9976353328998599999999999985999999986216888468987880121110665420
Q ss_pred -EEEEECCCCCCCCCHHHHHHCCCC--CCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf -899815886888878899842999--99999999999825257886415898642367888789789999999999805
Q 000755 682 -KAYVAQSPWIQSGNIEDNILFGKP--MDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQ 758 (1300)
Q Consensus 682 -iayv~Q~pwi~~gTIreNIlfG~~--~d~~~y~~vl~ac~L~~di~~lp~Gd~T~IGe~G~~LSGGQkqRIaLARAly~ 758 (1300)
++||+|+|++|++|+++|+.||.+ .+++++.++++.|++.++++.+|+|++|.+|++|.+|||||||||+||||+++
T Consensus 90 ~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~ 169 (253)
T d3b60a1 90 QVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR 169 (253)
T ss_dssp TEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 68799502544786202433205722089999999999981799997355441014348889849999999999999954
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEEECCEEEEECCHHHHHHCCCHHHHHH
Q ss_conf 99889981677788998999999999976029957999905988302398899993985989138688981286179999
Q 000755 759 DADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSGTDFMVLV 838 (1300)
Q Consensus 759 ~a~IllLDdp~SalD~~t~~~if~~~i~~~l~~kTvIlvTH~l~~l~~aD~Ilvl~~G~I~~~G~~~ell~~~~~~~~l~ 838 (1300)
+|+|++||||||+||+.++..|++ .+..+.+++|+|+|||+++.+..||+|++|++|+|++.|+++|+++.++.|.+++
T Consensus 170 ~p~ililDEpts~LD~~~~~~i~~-~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~~~~y~~l~ 248 (253)
T d3b60a1 170 DSPILILDEATSALDTESERAIQA-ALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLH 248 (253)
T ss_dssp CCSEEEEETTTSSCCHHHHHHHHH-HHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHTSSHHHHH
T ss_pred CCCEEEECCCCCCCCHHHHHHHHH-HHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHHHH
T ss_conf 998899516444589889999999-9987522788999988799998599999998999999889999986893999999
Q ss_pred HHH
Q ss_conf 988
Q 000755 839 GAH 841 (1300)
Q Consensus 839 ~~~ 841 (1300)
..+
T Consensus 249 ~~Q 251 (253)
T d3b60a1 249 KMQ 251 (253)
T ss_dssp HHT
T ss_pred HHC
T ss_conf 972
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=414.21 Aligned_cols=226 Identities=26% Similarity=0.383 Sum_probs=208.6
Q ss_pred CCCEEEEEEEEEEECCCCCCCCEECCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE-----------
Q ss_conf 853099996899834999999300111687389399998479999589999973126588637997493-----------
Q 000755 613 SETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT----------- 681 (1300)
Q Consensus 613 ~~~~I~i~~~~fsw~~~~~~~~L~~inl~i~~G~~vaIvG~~GSGKSTLL~~ilGe~~~~~G~I~v~g~----------- 681 (1300)
.++.|+++|++|+|+...+.++|+|+||++++|++++|+|++|||||||+++|+|.++|.+|+|.++|.
T Consensus 8 ~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r 87 (251)
T d1jj7a_ 8 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLH 87 (251)
T ss_dssp CCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHH
T ss_pred CCCEEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHHHH
T ss_conf 53369999989988999999767443899849989999999998499999998614378768998899853110137888
Q ss_pred --EEEEECCCCCCCCCHHHHHHCCCC--CCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf --899815886888878899842999--9999999999982525788641589864236788878978999999999980
Q 000755 682 --KAYVAQSPWIQSGNIEDNILFGKP--MDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALY 757 (1300)
Q Consensus 682 --iayv~Q~pwi~~gTIreNIlfG~~--~d~~~y~~vl~ac~L~~di~~lp~Gd~T~IGe~G~~LSGGQkqRIaLARAly 757 (1300)
++||+|+|++|++||+|||.||.. .+.++..++.+.+++.++++.+|+|++|.++++|.+|||||||||+||||++
T Consensus 88 ~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~ 167 (251)
T d1jj7a_ 88 RQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALI 167 (251)
T ss_dssp HHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEEEECCC
T ss_conf 77654045650027634655454210130278899999999899999856121113675167668954704899860445
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCC--CCEEEEEECCCCCCCCCCEEEEEECCEEEEECCHHHHHHCCCHHH
Q ss_conf 599889981677788998999999999976029--957999905988302398899993985989138688981286179
Q 000755 758 QDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLR--SKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSGTDFM 835 (1300)
Q Consensus 758 ~~a~IllLDdp~SalD~~t~~~if~~~i~~~l~--~kTvIlvTH~l~~l~~aD~Ilvl~~G~I~~~G~~~ell~~~~~~~ 835 (1300)
++|+|++||||||+||++++..+++ .+..+.+ ++|+|+|||+++.+..||+|++|++|+|++.|+++|+++.++.|.
T Consensus 168 ~~p~ililDEpTs~LD~~~~~~i~~-~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~~~~y~ 246 (251)
T d1jj7a_ 168 RKPCVLILDDATSALDANSQLQVEQ-LLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYW 246 (251)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHH-HHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHTSHHH
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHH-HHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHH
T ss_conf 6870787167576568536899999-999976506989999959799998599999998999999889999985975889
Q ss_pred HHHH
Q ss_conf 9999
Q 000755 836 VLVG 839 (1300)
Q Consensus 836 ~l~~ 839 (1300)
+++.
T Consensus 247 ~l~~ 250 (251)
T d1jj7a_ 247 AMVQ 250 (251)
T ss_dssp HHHC
T ss_pred HHHC
T ss_conf 9962
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=404.47 Aligned_cols=218 Identities=38% Similarity=0.679 Sum_probs=202.2
Q ss_pred EEEEEEEEEEECCCCCCCCEECCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCCCCCC
Q ss_conf 09999689983499999930011168738939999847999958999997312658863799749389981588688887
Q 000755 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGN 695 (1300)
Q Consensus 616 ~I~i~~~~fsw~~~~~~~~L~~inl~i~~G~~vaIvG~~GSGKSTLL~~ilGe~~~~~G~I~v~g~iayv~Q~pwi~~gT 695 (1300)
.|+|++.+| ..+|+|+|+||+|++|+++||+|++|||||||+++|+|++++++|+|.++|.++|++|+||++++|
T Consensus 38 ~i~~~~~~~-----~g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~t 112 (281)
T d1r0wa_ 38 NVSFSHLCL-----VGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGT 112 (281)
T ss_dssp --CHHHHHH-----TTCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCSCEEEECSSCCCCSEE
T ss_pred CEEEEECCC-----CCCEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCCCCCE
T ss_conf 679997698-----997677375999859999999989998299999999579747882899999999981643026760
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHH
Q ss_conf 88998429999999999999982525788641589864236788878978999999999980599889981677788998
Q 000755 696 IEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAH 775 (1300)
Q Consensus 696 IreNIlfG~~~d~~~y~~vl~ac~L~~di~~lp~Gd~T~IGe~G~~LSGGQkqRIaLARAly~~a~IllLDdp~SalD~~ 775 (1300)
|+|||.||..+++.++.++++.|.+..|+..+|+|++|.+|++|.+|||||||||+||||++++|+|++||||||+||+.
T Consensus 113 v~eni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~ 192 (281)
T d1r0wa_ 113 IKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVF 192 (281)
T ss_dssp HHHHHTTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHH
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHH
T ss_conf 32142033345605799999997769999846123323555542377999999999999998696351333855448989
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEEECCEEEEECCHHHHHHCCCHHHHHH
Q ss_conf 999999999976029957999905988302398899993985989138688981286179999
Q 000755 776 TGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSGTDFMVLV 838 (1300)
Q Consensus 776 t~~~if~~~i~~~l~~kTvIlvTH~l~~l~~aD~Ilvl~~G~I~~~G~~~ell~~~~~~~~l~ 838 (1300)
+...+++.++....+++|+|+|||+++.+..||+|++|++|+|++.|+++|++....+|....
T Consensus 193 ~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~~~~~~~~~ 255 (281)
T d1r0wa_ 193 TEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKL 255 (281)
T ss_dssp HHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCEEEEEECCEEEEECCHHHHHCCCCHHHHHH
T ss_conf 999999999988628999999925289998599999998999999878999960594899987
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=413.96 Aligned_cols=221 Identities=28% Similarity=0.464 Sum_probs=207.3
Q ss_pred EEEEEEEEEECCCCCCCCEECCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE-------------EE
Q ss_conf 99996899834999999300111687389399998479999589999973126588637997493-------------89
Q 000755 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------KA 683 (1300)
Q Consensus 617 I~i~~~~fsw~~~~~~~~L~~inl~i~~G~~vaIvG~~GSGKSTLL~~ilGe~~~~~G~I~v~g~-------------ia 683 (1300)
++++|++|+|+. .+++|+|+||++++|+++||+|++|||||||+++|+|.++|++|+|.++|. ++
T Consensus 2 le~knvsf~Y~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 79 (242)
T d1mv5a_ 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (242)
T ss_dssp EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEECCC--CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHEE
T ss_conf 799988998799--984142258998599999999999997999999999960989877988998844246788874367
Q ss_pred EEECCCCCCCCCHHHHHHCCCC--CCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 9815886888878899842999--99999999999825257886415898642367888789789999999999805998
Q 000755 684 YVAQSPWIQSGNIEDNILFGKP--MDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDAD 761 (1300)
Q Consensus 684 yv~Q~pwi~~gTIreNIlfG~~--~d~~~y~~vl~ac~L~~di~~lp~Gd~T~IGe~G~~LSGGQkqRIaLARAly~~a~ 761 (1300)
||+|+|++|++||+|||.++.. .++++..++++.+.+..++..+|+|.+|.+||+|.+|||||||||+||||++++|+
T Consensus 80 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ 159 (242)
T d1mv5a_ 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (242)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EECCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 97566545785345430124455542356778999997555420374210152368789879999999999999852998
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEEECCEEEEECCHHHHHHCCCHHHHHHHH
Q ss_conf 8998167778899899999999997602995799990598830239889999398598913868898128617999998
Q 000755 762 IYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSGTDFMVLVGA 840 (1300)
Q Consensus 762 IllLDdp~SalD~~t~~~if~~~i~~~l~~kTvIlvTH~l~~l~~aD~Ilvl~~G~I~~~G~~~ell~~~~~~~~l~~~ 840 (1300)
|++||||||+||++++..+++ .+..+.+++|+|+|||+++.+..||+|++|++|+|++.|+++||++.+..|.+++..
T Consensus 160 ililDEpts~LD~~~~~~i~~-~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~~~~y~~l~~~ 237 (242)
T d1mv5a_ 160 ILMLDEATASLDSESESMVQK-ALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSE 237 (242)
T ss_dssp EEEEECCSCSSCSSSCCHHHH-HHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHHHHHC
T ss_pred EEEECCCCCCCCHHHHHHHHH-HHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCHHHHHHHHH
T ss_conf 999658865569889999988-788871799899997879999849999999899999999999998689699999999
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=382.46 Aligned_cols=219 Identities=22% Similarity=0.343 Sum_probs=199.2
Q ss_pred CCEEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCC
Q ss_conf 75089984245648998941131159964893999997999859999999951779995269998964688897777302
Q 000755 1052 HGEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSR 1131 (1300)
Q Consensus 1052 ~g~I~~~nl~~~Y~~~~~~vL~~is~~i~~GekigIVGrTGsGKSTLl~~L~rl~~p~~G~I~Idg~di~~i~l~~lR~~ 1131 (1300)
.+.|.|+|+++.+ .|||+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+|| +
T Consensus 36 ~~~i~~~~~~~~g----~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------------~ 98 (281)
T d1r0wa_ 36 ENNVSFSHLCLVG----NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------R 98 (281)
T ss_dssp ----CHHHHHHTT----CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------C
T ss_pred CCCEEEEECCCCC----CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC-------------E
T ss_conf 8967999769899----7677375999859999999989998299999999579747882899999-------------9
Q ss_pred CEEECCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 18881788778654787138798899999999999839967897210787631236999889469999999998715998
Q 000755 1132 LSIIPQDPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSK 1211 (1300)
Q Consensus 1132 i~iIpQdp~lF~gTiR~NLdp~~~~sd~ei~~aL~~~~L~~~i~~~~~~Ld~~v~e~g~nlS~GQrQll~LARaLL~~~~ 1211 (1300)
++++||+|.+|++||++|+.+...+.+.+++++++.+++.+.+..++.++++.+++.|.+||+|||||++|||||+++|+
T Consensus 99 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~ 178 (281)
T d1r0wa_ 99 VSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDAD 178 (281)
T ss_dssp EEEECSSCCCCSEEHHHHHTTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCS
T ss_pred EEEEECCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 99981643026760321420333456057999999977699998461233235555423779999999999999986963
Q ss_pred EEEEECCCCCCCHHHHHHHHHH-HHHHCCCCEEEEEECCHHHHHCCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHH
Q ss_conf 8998578769899999999999-9982699279999279024440488999949879786595468721897699999
Q 000755 1212 VLVLDEATASVDTATDNLIQQT-LRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLV 1288 (1300)
Q Consensus 1212 ILiLDEaTa~lD~~Td~~Iq~~-i~~~f~~~TvI~IaHrl~ti~~~D~Vlvl~~G~i~e~g~p~~Ll~~~~s~f~~lv 1288 (1300)
||+|||||+++|+.|+..|.+. +....+++|+|+|+||++.+..||||++|++|+|+++|+|++|++.. +.|.+..
T Consensus 179 illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~~-~~~~~~~ 255 (281)
T d1r0wa_ 179 LYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLR-PDFSSKL 255 (281)
T ss_dssp EEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHC-HHHHHHH
T ss_pred CHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCEEEEEECCEEEEECCHHHHHCCC-CHHHHHH
T ss_conf 5133385544898999999999998862899999992528999859999999899999987899996059-4899987
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=8.7e-43 Score=346.74 Aligned_cols=217 Identities=22% Similarity=0.340 Sum_probs=192.1
Q ss_pred EEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCE
Q ss_conf 08998424564899894113115996489399999799985999999995177999526999896468889777730218
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLS 1133 (1300)
Q Consensus 1054 ~I~~~nl~~~Y~~~~~~vL~~is~~i~~GekigIVGrTGsGKSTLl~~L~rl~~p~~G~I~Idg~di~~i~l~~lR~~i~ 1133 (1300)
.|+++|++.+|... .+|+|+||++++||.+||+|+||||||||+++|.|+++|++|+|.+||.|++..+.+ |.+++
T Consensus 6 ~I~v~nlsk~yg~~--~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig 81 (239)
T d1v43a3 6 EVKLENLTKRFGNF--TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNIS 81 (239)
T ss_dssp CEEEEEEEEEETTE--EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEE
T ss_pred EEEEEEEEEEECCE--EEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCC--CCEEE
T ss_conf 49998799999999--998130678879989999999998299999999758999878799916413547700--01589
Q ss_pred EECCCCCCCCC-CHHHHCCCCC---CCCH----HHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 88178877865-4787138798---8999----99999999839967897210787631236999889469999999998
Q 000755 1134 IIPQDPTMFEG-TVRNNLDPLE---EYKD----EEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRV 1205 (1300)
Q Consensus 1134 iIpQdp~lF~g-TiR~NLdp~~---~~sd----~ei~~aL~~~~L~~~i~~~~~~Ld~~v~e~g~nlS~GQrQll~LARa 1205 (1300)
++||+|.+|.. |+++|+.... ..+. +.+.++|+.++|.+.....| ..||+|||||++||||
T Consensus 82 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSGGq~QRvaiAra 150 (239)
T d1v43a3 82 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP-----------AQLSGGQRQRVAVARA 150 (239)
T ss_dssp EEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----------TTCCSSCHHHHHHHHH
T ss_pred EEEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCH-----------HHCCHHHHHHHHHHHH
T ss_conf 98003353422209999999998739999999999999998759855660995-----------4699999889999766
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCHHHHHC-CCEEEEEECCEEEEECCHHHHHHCCCC
Q ss_conf 715998899857876989999999999999826--99279999279024440-488999949879786595468721897
Q 000755 1206 LLKKSKVLVLDEATASVDTATDNLIQQTLRQHF--SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENKSS 1282 (1300)
Q Consensus 1206 LL~~~~ILiLDEaTa~lD~~Td~~Iq~~i~~~f--~~~TvI~IaHrl~ti~~-~D~Vlvl~~G~i~e~g~p~~Ll~~~~s 1282 (1300)
|..+|+||+|||||+++|+.+...|++.|++.. .++|+|+|+|+++.+.. ||||++|++|++++.|+|+++++++..
T Consensus 151 L~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~ 230 (239)
T d1v43a3 151 IVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNS 230 (239)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSB
T ss_pred HCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCC
T ss_conf 40499824306886668989998999999999873198079994899999986999999989999998599999868999
Q ss_pred HHH
Q ss_conf 699
Q 000755 1283 SFA 1285 (1300)
Q Consensus 1283 ~f~ 1285 (1300)
.|.
T Consensus 231 ~~~ 233 (239)
T d1v43a3 231 VFV 233 (239)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 899
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=1e-42 Score=346.25 Aligned_cols=215 Identities=21% Similarity=0.361 Sum_probs=192.1
Q ss_pred EEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCE
Q ss_conf 08998424564899894113115996489399999799985999999995177999526999896468889777730218
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLS 1133 (1300)
Q Consensus 1054 ~I~~~nl~~~Y~~~~~~vL~~is~~i~~GekigIVGrTGsGKSTLl~~L~rl~~p~~G~I~Idg~di~~i~l~~lR~~i~ 1133 (1300)
.|+++|++.+|.. .+|+||||+|++||.+||+|+||||||||+++|.|+.+|++|+|.+||.|+++.+.. |.+++
T Consensus 1 mi~v~nlsk~y~~---~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig 75 (229)
T d3d31a2 1 MIEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIA 75 (229)
T ss_dssp CEEEEEEEEECSS---CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCE
T ss_pred CEEEEEEEEEECC---EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH--HHCCE
T ss_conf 9899989999499---788433789879989999989998299999999647688878899956734652165--74056
Q ss_pred EECCCCCCCCC-CHHHHCCC----CCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 88178877865-47871387----98899999999999839967897210787631236999889469999999998715
Q 000755 1134 IIPQDPTMFEG-TVRNNLDP----LEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLK 1208 (1300)
Q Consensus 1134 iIpQdp~lF~g-TiR~NLdp----~~~~sd~ei~~aL~~~~L~~~i~~~~~~Ld~~v~e~g~nlS~GQrQll~LARaLL~ 1208 (1300)
++||++.+|.. |+++|+.. .+.-.++++.++++.+++.+...+.| ..||+|||||+++||||+.
T Consensus 76 ~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSGG~~QRvaiAraL~~ 144 (229)
T d3d31a2 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNP-----------LTLSGGEQQRVALARALVT 144 (229)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCG-----------GGSCHHHHHHHHHHHHTTS
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHCCH-----------HHCCHHHHCCHHHHHHHHC
T ss_conf 15121111746657788888776405538999999999825655575895-----------5479998401403043443
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCHHHHHC-CCEEEEEECCEEEEECCHHHHHHCCCCHH
Q ss_conf 998899857876989999999999999826--99279999279024440-48899994987978659546872189769
Q 000755 1209 KSKVLVLDEATASVDTATDNLIQQTLRQHF--SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENKSSSF 1284 (1300)
Q Consensus 1209 ~~~ILiLDEaTa~lD~~Td~~Iq~~i~~~f--~~~TvI~IaHrl~ti~~-~D~Vlvl~~G~i~e~g~p~~Ll~~~~s~f 1284 (1300)
+|+||+|||||+++|+.+...|++.|++.. .+.|+|+|+|+++.+.. ||||++|++|++++.|+|+++++++...+
T Consensus 145 ~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P~~~~ 223 (229)
T d3d31a2 145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR 223 (229)
T ss_dssp CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTH
T ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHH
T ss_conf 6771443478767998999999999999986479689997499999999699999997999999869999986899879
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.2e-42 Score=345.57 Aligned_cols=216 Identities=21% Similarity=0.328 Sum_probs=192.4
Q ss_pred EEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEE
Q ss_conf 89984245648998941131159964893999997999859999999951779995269998964688897777302188
Q 000755 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSI 1134 (1300)
Q Consensus 1055 I~~~nl~~~Y~~~~~~vL~~is~~i~~GekigIVGrTGsGKSTLl~~L~rl~~p~~G~I~Idg~di~~i~l~~lR~~i~i 1134 (1300)
|+++|++.+|... .+|+|+||+|++||.+||+|+||||||||++++.|+.+|++|+|.++|.+++..+. .|.++++
T Consensus 1 Iev~nv~k~yg~~--~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~--~~r~ig~ 76 (232)
T d2awna2 1 VQLQNVTKAWGEV--VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPP--AERGVGM 76 (232)
T ss_dssp EEEEEEEEEETTE--EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCG--GGTCEEE
T ss_pred CEEEEEEEEECCE--EEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCH--HHCEEEE
T ss_conf 9999999998999--99811177886998999998999829999999965878888889999997788864--4432223
Q ss_pred ECCCCCCCCC-CHHHHCCCCCC---C----CHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 8178877865-47871387988---9----99999999998399678972107876312369998894699999999987
Q 000755 1135 IPQDPTMFEG-TVRNNLDPLEE---Y----KDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVL 1206 (1300)
Q Consensus 1135 IpQdp~lF~g-TiR~NLdp~~~---~----sd~ei~~aL~~~~L~~~i~~~~~~Ld~~v~e~g~nlS~GQrQll~LARaL 1206 (1300)
+||+|.+|.. |+++|+..... . .++.+.++|+.+++.+.....| ..||||||||++|||||
T Consensus 77 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~-----------~~LSGGqkQRvaiAraL 145 (232)
T d2awna2 77 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGRTL 145 (232)
T ss_dssp ECSSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHHHH
T ss_pred ECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCH-----------HHCCHHHHHHHHHHHHH
T ss_conf 4334202643337889789998759988999999999997578865664896-----------56999999999999997
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCHHHHHC-CCEEEEEECCEEEEECCHHHHHHCCCCH
Q ss_conf 15998899857876989999999999999826--99279999279024440-4889999498797865954687218976
Q 000755 1207 LKKSKVLVLDEATASVDTATDNLIQQTLRQHF--SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENKSSS 1283 (1300)
Q Consensus 1207 L~~~~ILiLDEaTa~lD~~Td~~Iq~~i~~~f--~~~TvI~IaHrl~ti~~-~D~Vlvl~~G~i~e~g~p~~Ll~~~~s~ 1283 (1300)
+.+|++|+|||||+++|+.+...|++.|++.. .+.|+|+++|++..+.. ||||++|++|++++.|+|.++++++...
T Consensus 146 ~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~~ 225 (232)
T d2awna2 146 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADR 225 (232)
T ss_dssp HTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBH
T ss_pred HCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHHCCCCH
T ss_conf 03998899758887889889989999999998742987999948999999969999999799999980899997389997
Q ss_pred HH
Q ss_conf 99
Q 000755 1284 FA 1285 (1300)
Q Consensus 1284 f~ 1285 (1300)
|.
T Consensus 226 ~v 227 (232)
T d2awna2 226 FV 227 (232)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=5.6e-43 Score=348.27 Aligned_cols=221 Identities=20% Similarity=0.317 Sum_probs=194.0
Q ss_pred EEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCC---HHHHHC
Q ss_conf 08998424564899894113115996489399999799985999999995177999526999896468889---777730
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIG---LHDLRS 1130 (1300)
Q Consensus 1054 ~I~~~nl~~~Y~~~~~~vL~~is~~i~~GekigIVGrTGsGKSTLl~~L~rl~~p~~G~I~Idg~di~~i~---l~~lR~ 1130 (1300)
.|+++|++.+|..+...+|+|+||+|++||.+||+|+||||||||+++|.|+.+|++|+|.+||.|+...+ ....|.
T Consensus 3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr 82 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (242)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEEEEEEECCCCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHHHC
T ss_conf 89997579998899989980407898799899999899980999999997586888745999999951373111531204
Q ss_pred CCEEECCCCCCCCC-CHHHHCCC-CC--CCC----HHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 21888178877865-47871387-98--899----999999999839967897210787631236999889469999999
Q 000755 1131 RLSIIPQDPTMFEG-TVRNNLDP-LE--EYK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCL 1202 (1300)
Q Consensus 1131 ~i~iIpQdp~lF~g-TiR~NLdp-~~--~~s----d~ei~~aL~~~~L~~~i~~~~~~Ld~~v~e~g~nlS~GQrQll~L 1202 (1300)
++++|||+|.+|+. |+++|+.. .. ..+ ++.+.++|+.++|.+.....|. .||||||||+++
T Consensus 83 ~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~-----------~LSGGqkQRvai 151 (242)
T d1oxxk2 83 KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPR-----------ELSGAQQQRVAL 151 (242)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGG-----------GSCHHHHHHHHH
T ss_pred CCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHCCHH-----------HCCHHHHHHHHH
T ss_conf 514773043346666577776655676137999999999999866591766648954-----------599999858998
Q ss_pred HHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCHHHHHC-CCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 998715998899857876989999999999999826--99279999279024440-488999949879786595468721
Q 000755 1203 GRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF--SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLEN 1279 (1300)
Q Consensus 1203 ARaLL~~~~ILiLDEaTa~lD~~Td~~Iq~~i~~~f--~~~TvI~IaHrl~ti~~-~D~Vlvl~~G~i~e~g~p~~Ll~~ 1279 (1300)
||||..+|++|++||||+++|+.+...+++.|++.. .+.|+|+|+|+++.+.. ||||++|++|+|++.|+|++++++
T Consensus 152 ARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~~ 231 (242)
T d1oxxk2 152 ARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231 (242)
T ss_dssp HHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 75776046614544786679989988998999999863598799997999999996999999989999998699999868
Q ss_pred CCCHHH
Q ss_conf 897699
Q 000755 1280 KSSSFA 1285 (1300)
Q Consensus 1280 ~~s~f~ 1285 (1300)
+...+.
T Consensus 232 P~~~~~ 237 (242)
T d1oxxk2 232 PVSIQV 237 (242)
T ss_dssp CSSHHH
T ss_pred CCCHHH
T ss_conf 999799
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=1.3e-42 Score=345.45 Aligned_cols=219 Identities=20% Similarity=0.356 Sum_probs=192.2
Q ss_pred EEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH----HH
Q ss_conf 08998424564899894113115996489399999799985999999995177999526999896468889777----73
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHD----LR 1129 (1300)
Q Consensus 1054 ~I~~~nl~~~Y~~~~~~vL~~is~~i~~GekigIVGrTGsGKSTLl~~L~rl~~p~~G~I~Idg~di~~i~l~~----lR 1129 (1300)
.|+++|++.+|... .+|+|+||++++||.+||+|+||||||||+++|.|+.+|++|+|.+||.|+....... .|
T Consensus 3 ~i~v~nl~k~yg~~--~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~ 80 (240)
T d1g2912 3 GVRLVDVWKVFGEV--TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKD 80 (240)
T ss_dssp EEEEEEEEEEETTE--EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGG
T ss_pred CEEEEEEEEEECCE--EEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCCCC
T ss_conf 18998699998999--9985606688699899999999980999999996487889898999999803566444245322
Q ss_pred CCCEEECCCCCCCCC-CHHHHCCCC---CCCC----HHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 021888178877865-478713879---8899----99999999983996789721078763123699988946999999
Q 000755 1130 SRLSIIPQDPTMFEG-TVRNNLDPL---EEYK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVC 1201 (1300)
Q Consensus 1130 ~~i~iIpQdp~lF~g-TiR~NLdp~---~~~s----d~ei~~aL~~~~L~~~i~~~~~~Ld~~v~e~g~nlS~GQrQll~ 1201 (1300)
.+++++||+|.+|+. |+++|+... ...+ ++.+.++++.+++.+.....| ..||||||||++
T Consensus 81 r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p-----------~~LSGGqkQRv~ 149 (240)
T d1g2912 81 RDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP-----------RELSGGQRQRVA 149 (240)
T ss_dssp SSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCG-----------GGSCHHHHHHHH
T ss_pred CCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCH-----------HHCCHHHHHHHH
T ss_conf 551200221222310116676330687729998999999999998759966762993-----------349999999999
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCHHHHHC-CCEEEEEECCEEEEECCHHHHHH
Q ss_conf 9998715998899857876989999999999999826--99279999279024440-48899994987978659546872
Q 000755 1202 LGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF--SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLE 1278 (1300)
Q Consensus 1202 LARaLL~~~~ILiLDEaTa~lD~~Td~~Iq~~i~~~f--~~~TvI~IaHrl~ti~~-~D~Vlvl~~G~i~e~g~p~~Ll~ 1278 (1300)
+||||+.+|+||+|||||+++|+.+...|++.|++.. .+.|+|+|+|+++.+.. ||||++|++|++++.|+|+++++
T Consensus 150 IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~~ 229 (240)
T d1g2912 150 LGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229 (240)
T ss_dssp HHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 99998269988982588765698999899999999986369889999599999999699999998999999859999982
Q ss_pred CCCCHHH
Q ss_conf 1897699
Q 000755 1279 NKSSSFA 1285 (1300)
Q Consensus 1279 ~~~s~f~ 1285 (1300)
++...|-
T Consensus 230 ~P~~~~~ 236 (240)
T d1g2912 230 KPANTFV 236 (240)
T ss_dssp SCSBHHH
T ss_pred CCCCHHH
T ss_conf 8999898
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.8e-42 Score=344.24 Aligned_cols=219 Identities=27% Similarity=0.435 Sum_probs=192.1
Q ss_pred EEEEEEEEEECCCCC--CCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH---HH
Q ss_conf 899842456489989--4113115996489399999799985999999995177999526999896468889777---73
Q 000755 1055 VDILNLQVRYAPHLP--LVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHD---LR 1129 (1300)
Q Consensus 1055 I~~~nl~~~Y~~~~~--~vL~~is~~i~~GekigIVGrTGsGKSTLl~~L~rl~~p~~G~I~Idg~di~~i~l~~---lR 1129 (1300)
|+++|++..|..+.. .+|+|+||+|++||.+||+|+||||||||+++|.|+.+|++|+|.++|.|+...+.++ +|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHHH
T ss_conf 79982799969998148986150578869979999899989888999987588636677328867685208755511554
Q ss_pred CCCEEECCCCCCCCC-CHHHHCCC-C--CCC----CHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 021888178877865-47871387-9--889----999999999983996789721078763123699988946999999
Q 000755 1130 SRLSIIPQDPTMFEG-TVRNNLDP-L--EEY----KDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVC 1201 (1300)
Q Consensus 1130 ~~i~iIpQdp~lF~g-TiR~NLdp-~--~~~----sd~ei~~aL~~~~L~~~i~~~~~~Ld~~v~e~g~nlS~GQrQll~ 1201 (1300)
+++++|||+|.+|+. |+++|+.. . ... .++.+.++|++++|.+.....| ..||||||||++
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~-----------~~LSGG~~QRva 150 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYP-----------SNLSGGQKQRVA 150 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCB-----------SCCCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCCH-----------HHCCHHHHHHHH
T ss_conf 166430225222799649999999999849998999999999999769903554894-----------349999998999
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCHHHHHC-CCEEEEEECCEEEEECCHHHHHH
Q ss_conf 99987159988998578769899999999999998269--9279999279024440-48899994987978659546872
Q 000755 1202 LGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLE 1278 (1300)
Q Consensus 1202 LARaLL~~~~ILiLDEaTa~lD~~Td~~Iq~~i~~~f~--~~TvI~IaHrl~ti~~-~D~Vlvl~~G~i~e~g~p~~Ll~ 1278 (1300)
+||||..+|++|++||||+++|+.+...|++.|++..+ +.|+|+|+|++..+.. ||||++|++|+|+|.|+|.++++
T Consensus 151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~ 230 (240)
T d3dhwc1 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230 (240)
T ss_dssp HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTC
T ss_pred HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 86401058986874465565898885679999999986469789998389999998699999997999999879999972
Q ss_pred CCCCHH
Q ss_conf 189769
Q 000755 1279 NKSSSF 1284 (1300)
Q Consensus 1279 ~~~s~f 1284 (1300)
++...+
T Consensus 231 ~P~~~~ 236 (240)
T d3dhwc1 231 HPKTPL 236 (240)
T ss_dssp SSCCTT
T ss_pred CCCCHH
T ss_conf 899857
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=5.3e-42 Score=340.62 Aligned_cols=223 Identities=27% Similarity=0.422 Sum_probs=193.1
Q ss_pred EEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCH--------
Q ss_conf 089984245648998941131159964893999997999859999999951779995269998964688897--------
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGL-------- 1125 (1300)
Q Consensus 1054 ~I~~~nl~~~Y~~~~~~vL~~is~~i~~GekigIVGrTGsGKSTLl~~L~rl~~p~~G~I~Idg~di~~i~l-------- 1125 (1300)
.|+++|++.+|... .+|+||||+|++||.+||+|++|||||||+++|.|+.+|++|+|.+||.|+...+.
T Consensus 2 ~Lev~nl~k~yg~~--~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 79 (258)
T d1b0ua_ 2 KLHVIDLHKRYGGH--EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 79 (258)
T ss_dssp CEEEEEEEEEETTE--EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred EEEEEEEEEEECCE--EEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHCCCC
T ss_conf 69999789998999--9881506688699799999899982999999997476678997799999933677520000235
Q ss_pred -----HHHHCCCEEECCCCCCCCC-CHHHHCCC----CCCCC----HHHHHHHHHHCCCCHHHHH-HCCCCCCCCCCCCC
Q ss_conf -----7773021888178877865-47871387----98899----9999999998399678972-10787631236999
Q 000755 1126 -----HDLRSRLSIIPQDPTMFEG-TVRNNLDP----LEEYK----DEEIWEALDKCQLGDEVRN-KEGKLDSRVTENGE 1190 (1300)
Q Consensus 1126 -----~~lR~~i~iIpQdp~lF~g-TiR~NLdp----~~~~s----d~ei~~aL~~~~L~~~i~~-~~~~Ld~~v~e~g~ 1190 (1300)
...|.++++|+|+|.+|+. |+++|+.. ....+ ++.+.++++++++.+.... .| .
T Consensus 80 ~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p-----------~ 148 (258)
T d1b0ua_ 80 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYP-----------V 148 (258)
T ss_dssp CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCG-----------G
T ss_pred CHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCCCC-----------C
T ss_conf 17679997454489983323141101021365657876299989999999999998299524430682-----------2
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHHHHHC-CCEEEEEECCEEE
Q ss_conf 889469999999998715998899857876989999999999999826-99279999279024440-4889999498797
Q 000755 1191 NWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGIIE 1268 (1300)
Q Consensus 1191 nlS~GQrQll~LARaLL~~~~ILiLDEaTa~lD~~Td~~Iq~~i~~~f-~~~TvI~IaHrl~ti~~-~D~Vlvl~~G~i~ 1268 (1300)
.|||||+||+++||||..+|++|++||||+++|+.+...|.+.|++.. .+.|+|+|+|+++.+.. ||||+||++|+|+
T Consensus 149 ~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv 228 (258)
T d1b0ua_ 149 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 228 (258)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCEEEEEECCEEE
T ss_conf 05677888989999984399878852455568878888998765541036883389948999999869999999799999
Q ss_pred EECCHHHHHHCCCCHHH-HHHH
Q ss_conf 86595468721897699-9999
Q 000755 1269 EYDSPTKLLENKSSSFA-QLVA 1289 (1300)
Q Consensus 1269 e~g~p~~Ll~~~~s~f~-~lv~ 1289 (1300)
|.|+|.+++.++...+. +++.
T Consensus 229 ~~g~~~ev~~~P~~~~~~~ll~ 250 (258)
T d1b0ua_ 229 EEGDPEQVFGNPQSPRLQQFLK 250 (258)
T ss_dssp EEECHHHHHHSCCSHHHHHHHH
T ss_pred EECCHHHHHHCCCCHHHHHHHH
T ss_conf 9849999983899999999881
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.8e-41 Score=335.01 Aligned_cols=208 Identities=24% Similarity=0.375 Sum_probs=180.4
Q ss_pred EEEEEEEEEECCCCC--CCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHH----
Q ss_conf 899842456489989--41131159964893999997999859999999951779995269998964688897777----
Q 000755 1055 VDILNLQVRYAPHLP--LVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDL---- 1128 (1300)
Q Consensus 1055 I~~~nl~~~Y~~~~~--~vL~~is~~i~~GekigIVGrTGsGKSTLl~~L~rl~~p~~G~I~Idg~di~~i~l~~l---- 1128 (1300)
|+++|++.+|..+.. .+|+|+||+|++||.+||+|+||||||||+++|.|+.+|++|+|.+||.|+..++.+++
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHHH
T ss_conf 89990799948998208987133778849979999889999821655750688777766269999985768855512312
Q ss_pred HCCCEEECCCCCCCCC-CHHHHCCC---C---CCCCH----HHHHHHHHHCCCCHHH-HHHCCCCCCCCCCCCCCCCHHH
Q ss_conf 3021888178877865-47871387---9---88999----9999999983996789-7210787631236999889469
Q 000755 1129 RSRLSIIPQDPTMFEG-TVRNNLDP---L---EEYKD----EEIWEALDKCQLGDEV-RNKEGKLDSRVTENGENWSMGQ 1196 (1300)
Q Consensus 1129 R~~i~iIpQdp~lF~g-TiR~NLdp---~---~~~sd----~ei~~aL~~~~L~~~i-~~~~~~Ld~~v~e~g~nlS~GQ 1196 (1300)
|+++++|+|+|.+|+. |+++|+.. + +..+. +++.+.|+.++|.+.. ...| .+|||||
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p-----------~~LSGGq 150 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKP-----------NQLSGGQ 150 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCG-----------GGSCHHH
T ss_pred CCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCH-----------HHCCHHH
T ss_conf 55577880412417686688877578887224789999999999998876242345534880-----------2389999
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCHHHHHCCCEEEEEECCEEEEECCH
Q ss_conf 999999998715998899857876989999999999999826--99279999279024440488999949879786595
Q 000755 1197 RQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF--SDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSP 1273 (1300)
Q Consensus 1197 rQll~LARaLL~~~~ILiLDEaTa~lD~~Td~~Iq~~i~~~f--~~~TvI~IaHrl~ti~~~D~Vlvl~~G~i~e~g~p 1273 (1300)
|||+++||||..+|++|++||||+++|+.+...|++.|++.. .++|+|+|+|+++.+..||||++|++|+|+|.|++
T Consensus 151 kQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 151 QQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCC
T ss_conf 9999987565227888994687654698999999999999998439999998788899986998999989999995257
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.5e-40 Score=329.39 Aligned_cols=215 Identities=22% Similarity=0.402 Sum_probs=187.3
Q ss_pred CEEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCC
Q ss_conf 50899842456489989411311599648939999979998599999999517799952699989646888977773021
Q 000755 1053 GEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRL 1132 (1300)
Q Consensus 1053 g~I~~~nl~~~Y~~~~~~vL~~is~~i~~GekigIVGrTGsGKSTLl~~L~rl~~p~~G~I~Idg~di~~i~l~~lR~~i 1132 (1300)
|.|+++|++.+|... .+|+|+||++++||.+||+|++|||||||+++|.|+++|++|+|.++|.|+.+ ..+++|+++
T Consensus 1 gaI~v~nl~k~yg~~--~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~-~~~~~~~~i 77 (238)
T d1vpla_ 1 GAVVVKDLRKRIGKK--EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLI 77 (238)
T ss_dssp CCEEEEEEEEEETTE--EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTTE
T ss_pred CCEEEEEEEEEECCE--EEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCC-CHHHHHHHE
T ss_conf 978999589999999--99806256884897999999999999999999966988788879998672446-839887218
Q ss_pred EEECCCCCCCCC-CHHHHCCCC---CCCCHHH----HHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 888178877865-478713879---8899999----99999983996789721078763123699988946999999999
Q 000755 1133 SIIPQDPTMFEG-TVRNNLDPL---EEYKDEE----IWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGR 1204 (1300)
Q Consensus 1133 ~iIpQdp~lF~g-TiR~NLdp~---~~~sd~e----i~~aL~~~~L~~~i~~~~~~Ld~~v~e~g~nlS~GQrQll~LAR 1204 (1300)
+++||++.+|.. |+++|+..+ ...++++ +..+++.+++.+.... ...+||+|||||+++||
T Consensus 78 ~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~lSgG~~qrv~iA~ 146 (238)
T d1vpla_ 78 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKD-----------RVSTYSKGMVRKLLIAR 146 (238)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGS-----------BGGGCCHHHHHHHHHHH
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHH-----------HHHHCCHHHHHHHHHHH
T ss_conf 6750015468786677888989986179989999999999986797888850-----------45337998989999999
Q ss_pred HHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHHHHHC-CCEEEEEECCEEEEECCHHHHHHCCC
Q ss_conf 8715998899857876989999999999999826-99279999279024440-48899994987978659546872189
Q 000755 1205 VLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENKS 1281 (1300)
Q Consensus 1205 aLL~~~~ILiLDEaTa~lD~~Td~~Iq~~i~~~f-~~~TvI~IaHrl~ti~~-~D~Vlvl~~G~i~e~g~p~~Ll~~~~ 1281 (1300)
||+.+|+||+|||||+++|+.+...|++.|++.. .+.|||+++|+++.+.. ||||++|++|++++.|+|+++.++..
T Consensus 147 al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~~ 225 (238)
T d1vpla_ 147 ALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYK 225 (238)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHTT
T ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCC
T ss_conf 9865999887337988979899999999999999659989999598999999699999998999999928999986528
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=9.9e-41 Score=330.70 Aligned_cols=213 Identities=25% Similarity=0.313 Sum_probs=184.0
Q ss_pred EEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHC-CC
Q ss_conf 08998424564899894113115996489399999799985999999995177999526999896468889777730-21
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS-RL 1132 (1300)
Q Consensus 1054 ~I~~~nl~~~Y~~~~~~vL~~is~~i~~GekigIVGrTGsGKSTLl~~L~rl~~p~~G~I~Idg~di~~i~l~~lR~-~i 1132 (1300)
.++++|++.+|... .+|+||||++++||.+||+|+||||||||+++|.|+++|.+|+|.++|.|+...+.+++++ .+
T Consensus 4 iL~v~nlsk~yg~~--~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi 81 (254)
T d1g6ha_ 4 ILRTENIVKYFGEF--KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 81 (254)
T ss_dssp EEEEEEEEEEETTE--EEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred EEEEEEEEEEECCE--EEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHHCC
T ss_conf 69997789997996--8871217998899799999999984999999997797688737999999664056999998338
Q ss_pred EEECCCCCCCCC-CHHHHCCCCC---------------C-CC-H---HHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCC
Q ss_conf 888178877865-4787138798---------------8-99-9---999999998399678972107876312369998
Q 000755 1133 SIIPQDPTMFEG-TVRNNLDPLE---------------E-YK-D---EEIWEALDKCQLGDEVRNKEGKLDSRVTENGEN 1191 (1300)
Q Consensus 1133 ~iIpQdp~lF~g-TiR~NLdp~~---------------~-~s-d---~ei~~aL~~~~L~~~i~~~~~~Ld~~v~e~g~n 1191 (1300)
+++||+|.+|.. |+++|+-... . .. . ++..++++.+++.+.... ...+
T Consensus 82 ~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~ 150 (254)
T d1g6ha_ 82 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDR-----------KAGE 150 (254)
T ss_dssp EECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTS-----------BGGG
T ss_pred CCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHCCC-----------CHHH
T ss_conf 72577642478874232143013330345045665421353289999999999876196302059-----------5356
Q ss_pred CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHHHHHC-CCEEEEEECCEEEE
Q ss_conf 89469999999998715998899857876989999999999999826-99279999279024440-48899994987978
Q 000755 1192 WSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGIIEE 1269 (1300)
Q Consensus 1192 lS~GQrQll~LARaLL~~~~ILiLDEaTa~lD~~Td~~Iq~~i~~~f-~~~TvI~IaHrl~ti~~-~D~Vlvl~~G~i~e 1269 (1300)
||+|||||+++||||..+|++|+|||||+++|+.+...|.+.|++.. +++|||+|+|+++.+.. ||||+||++|++++
T Consensus 151 LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~ 230 (254)
T d1g6ha_ 151 LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIA 230 (254)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEE
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEE
T ss_conf 99188889999999975927232439765699999999999999999789989999476999998699999996998999
Q ss_pred ECCHHHHHHC
Q ss_conf 6595468721
Q 000755 1270 YDSPTKLLEN 1279 (1300)
Q Consensus 1270 ~g~p~~Ll~~ 1279 (1300)
.|+|+++.++
T Consensus 231 ~g~~~e~~~~ 240 (254)
T d1g6ha_ 231 EGRGEEEIKN 240 (254)
T ss_dssp EEESHHHHHH
T ss_pred EECHHHHHHC
T ss_conf 9668998654
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=2.2e-40 Score=328.05 Aligned_cols=216 Identities=20% Similarity=0.372 Sum_probs=182.1
Q ss_pred CEEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHC-C
Q ss_conf 508998424564899894113115996489399999799985999999995177999526999896468889777730-2
Q 000755 1053 GEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS-R 1131 (1300)
Q Consensus 1053 g~I~~~nl~~~Y~~~~~~vL~~is~~i~~GekigIVGrTGsGKSTLl~~L~rl~~p~~G~I~Idg~di~~i~l~~lR~-~ 1131 (1300)
-.++++|++.+|... .+|+|+||++++||.+||+|+||||||||+++|+|+++|++|+|.+||.|+...+.+..+. .
T Consensus 5 ~~Lev~~l~k~yg~~--~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~g 82 (240)
T d1ji0a_ 5 IVLEVQSLHVYYGAI--HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEEETTE--EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred EEEEEEEEEEEECCE--EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHC
T ss_conf 079996189998998--888302578889979999999998599999999678888803898424434466088888742
Q ss_pred CEEECCCCCCCCC-CHHHHCCCC--CCCCHHH----HHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 1888178877865-478713879--8899999----99999983996789721078763123699988946999999999
Q 000755 1132 LSIIPQDPTMFEG-TVRNNLDPL--EEYKDEE----IWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGR 1204 (1300)
Q Consensus 1132 i~iIpQdp~lF~g-TiR~NLdp~--~~~sd~e----i~~aL~~~~L~~~i~~~~~~Ld~~v~e~g~nlS~GQrQll~LAR 1204 (1300)
++++||++.+|+. |+++|+... .....++ +.++++.. ..+...++ ....+||+|||||+++||
T Consensus 83 i~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~------~~l~~~~~----~~~~~LSGG~~Qrv~iAr 152 (240)
T d1ji0a_ 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLF------PRLKERLK----QLGGTLSGGEQQMLAIGR 152 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHC------HHHHTTTT----SBSSSSCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH------HCHHHHHH----CCHHHCCHHHHHHHHHHH
T ss_conf 35567655457763699999988873278889999999999874------17688875----854338999999999999
Q ss_pred HHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHHHHHC-CCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf 8715998899857876989999999999999826-99279999279024440-4889999498797865954687218
Q 000755 1205 VLLKKSKVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENK 1280 (1300)
Q Consensus 1205 aLL~~~~ILiLDEaTa~lD~~Td~~Iq~~i~~~f-~~~TvI~IaHrl~ti~~-~D~Vlvl~~G~i~e~g~p~~Ll~~~ 1280 (1300)
||+.+|++|+|||||+++|+.+...|.+.|++.. .++|+|+++|+++.+.. ||||++|++|++++.|+|+++++++
T Consensus 153 aL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~ 230 (240)
T d1ji0a_ 153 ALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNE 230 (240)
T ss_dssp HHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTCH
T ss_pred HHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCCH
T ss_conf 998299874003988679999999999999999968998999958899999969999999899999984899984298
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=2.7e-39 Score=319.45 Aligned_cols=216 Identities=25% Similarity=0.419 Sum_probs=182.7
Q ss_pred EEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEE
Q ss_conf 89984245648998941131159964893999997999859999999951779995269998964688897777302188
Q 000755 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSI 1134 (1300)
Q Consensus 1055 I~~~nl~~~Y~~~~~~vL~~is~~i~~GekigIVGrTGsGKSTLl~~L~rl~~p~~G~I~Idg~di~~i~l~~lR~~i~i 1134 (1300)
+++ ++.-+|... .+ |+||++. +|.+||+|+||||||||+++|.|+.+|++|+|.++|.|++.++.. |.++++
T Consensus 3 l~v-~~~k~~g~~---~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig~ 74 (240)
T d2onka1 3 LKV-RAEKRLGNF---RL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGF 74 (240)
T ss_dssp EEE-EEEEEETTE---EE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCBC
T ss_pred EEE-EEEEEECCE---EE-EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHH--HCCCEE
T ss_conf 999-999998999---99-9999749-979999979998099999999739998962899999998869989--928522
Q ss_pred ECCCCCCCCC-CHHHHCCC-CCCCC----HHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 8178877865-47871387-98899----999999999839967897210787631236999889469999999998715
Q 000755 1135 IPQDPTMFEG-TVRNNLDP-LEEYK----DEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLK 1208 (1300)
Q Consensus 1135 IpQdp~lF~g-TiR~NLdp-~~~~s----d~ei~~aL~~~~L~~~i~~~~~~Ld~~v~e~g~nlS~GQrQll~LARaLL~ 1208 (1300)
+||+|.+|+. ||++|+.. ....+ ++.+.++++++++.+.....| ..||||||||+++|||++.
T Consensus 75 v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl~~~~~~~~-----------~~LSGG~kQRvaiAral~~ 143 (240)
T d2onka1 75 VPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKP-----------ARLSGGERQRVALARALVI 143 (240)
T ss_dssp CCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCG-----------GGSCHHHHHHHHHHHHHTT
T ss_pred ECCCHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCH-----------HHCCHHHHHHHHHHHHHHC
T ss_conf 52314435220155766653233677889999999998638375665794-----------4489999899999877751
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCHHHHHC-CCEEEEEECCEEEEECCHHHHHHCCCCHHH
Q ss_conf 9988998578769899999999999998269--9279999279024440-488999949879786595468721897699
Q 000755 1209 KSKVLVLDEATASVDTATDNLIQQTLRQHFS--DCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENKSSSFA 1285 (1300)
Q Consensus 1209 ~~~ILiLDEaTa~lD~~Td~~Iq~~i~~~f~--~~TvI~IaHrl~ti~~-~D~Vlvl~~G~i~e~g~p~~Ll~~~~s~f~ 1285 (1300)
+|+||+|||||+++|+.+...+++.|++..+ +.|+|+|+|+++.+.. ||||++|++|++++.|+|+++++.++..-.
T Consensus 144 ~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~~~~v~ 223 (240)
T d2onka1 144 QPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVA 223 (240)
T ss_dssp CCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSSHH
T ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHCCCCHHHH
T ss_conf 67706752865558879999999999999874397699981899999996999999989999999069998329988999
Q ss_pred HHHH
Q ss_conf 9999
Q 000755 1286 QLVA 1289 (1300)
Q Consensus 1286 ~lv~ 1289 (1300)
+++.
T Consensus 224 ~fl~ 227 (240)
T d2onka1 224 EFLS 227 (240)
T ss_dssp HHGG
T ss_pred HHHC
T ss_conf 9857
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.9e-38 Score=312.88 Aligned_cols=199 Identities=31% Similarity=0.443 Sum_probs=173.2
Q ss_pred EEEEEEEEEECCCCCCCCEECCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC-----------EEEEE
Q ss_conf 9999689983499999930011168738939999847999958999997312658863799749-----------38998
Q 000755 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-----------TKAYV 685 (1300)
Q Consensus 617 I~i~~~~fsw~~~~~~~~L~~inl~i~~G~~vaIvG~~GSGKSTLL~~ilGe~~~~~G~I~v~g-----------~iayv 685 (1300)
|+++|++++|+ +..+|+|+||++++||.++++||+|||||||+++|.|.++|++|+|.++| .++||
T Consensus 1 Iev~nv~k~yg---~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v 77 (232)
T d2awna2 1 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMV 77 (232)
T ss_dssp EEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEE
T ss_pred CEEEEEEEEEC---CEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHCEEEEE
T ss_conf 99999999989---999981117788699899999899982999999996587888888999999778886444322234
Q ss_pred ECCCCCCC-CCHHHHHHCCCCC---C----HHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 15886888-8788998429999---9----99999999982525788641589864236788878978999999999980
Q 000755 686 AQSPWIQS-GNIEDNILFGKPM---D----REKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALY 757 (1300)
Q Consensus 686 ~Q~pwi~~-gTIreNIlfG~~~---d----~~~y~~vl~ac~L~~di~~lp~Gd~T~IGe~G~~LSGGQkqRIaLARAly 757 (1300)
+|+|-++. -|++|||.|+... + +++..++++...|.+..+.. ..+||||||||++||||+.
T Consensus 78 ~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~-----------~~~LSGGqkQRvaiAraL~ 146 (232)
T d2awna2 78 FQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRK-----------PKALSGGQRQRVAIGRTLV 146 (232)
T ss_dssp CSSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCC-----------HHHCCHHHHHHHHHHHHHH
T ss_conf 33420264333788978999875998899999999999757886566489-----------6569999999999999970
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHH--CCCCEEEEEECCCCCCCC-CCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 5998899816777889989999999999760--299579999059883023-988999939859891386889812
Q 000755 758 QDADIYLFDDPFSAVDAHTGSHLFKEVLLGL--LRSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDILNS 830 (1300)
Q Consensus 758 ~~a~IllLDdp~SalD~~t~~~if~~~i~~~--l~~kTvIlvTH~l~~l~~-aD~Ilvl~~G~I~~~G~~~ell~~ 830 (1300)
.+|++++||||||+||+.+...+++ .+..+ -.++|+|+|||+++.... ||+|++|++|+|++.|+.+|+++.
T Consensus 147 ~~P~illlDEPts~LD~~~~~~i~~-~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~ 221 (232)
T d2awna2 147 AEPSVFLLDEPLSNLDAALRVQMRI-EISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 221 (232)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHH-HHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHH-HHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHHC
T ss_conf 3998899758887889889989999-99999874298799994899999996999999979999998089999738
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=2.7e-38 Score=311.64 Aligned_cols=203 Identities=26% Similarity=0.371 Sum_probs=175.7
Q ss_pred EEEEEEEEEEECCCCCCCCEECCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC---------------
Q ss_conf 09999689983499999930011168738939999847999958999997312658863799749---------------
Q 000755 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--------------- 680 (1300)
Q Consensus 616 ~I~i~~~~fsw~~~~~~~~L~~inl~i~~G~~vaIvG~~GSGKSTLL~~ilGe~~~~~G~I~v~g--------------- 680 (1300)
.|+++|++++|+.+ +..+|+|+||++++||.++|+||+|||||||+++|.|..+|++|+|.++|
T Consensus 3 ~i~v~nlsk~y~~g-~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~r 81 (242)
T d1oxxk2 3 RIIVKNVSKVFKKG-KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (242)
T ss_dssp CEEEEEEEEEEGGG-TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEEEEEEECCC-CEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHHH
T ss_conf 89997579998899-98998040789879989999989998099999999758688874599999995137311153120
Q ss_pred -EEEEEECCCCCCC-CCHHHHHHCCCC---CC----HHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf -3899815886888-878899842999---99----99999999982525788641589864236788878978999999
Q 000755 681 -TKAYVAQSPWIQS-GNIEDNILFGKP---MD----REKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQ 751 (1300)
Q Consensus 681 -~iayv~Q~pwi~~-gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~di~~lp~Gd~T~IGe~G~~LSGGQkqRIa 751 (1300)
.++||+|+|-++. -|++|||.|+.. .+ +++.+++++.+.|.+..+..| ..||||||||++
T Consensus 82 r~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p-----------~~LSGGqkQRva 150 (242)
T d1oxxk2 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP-----------RELSGAQQQRVA 150 (242)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHCCH-----------HHCCHHHHHHHH
T ss_conf 451477304334666657777665567613799999999999986659176664895-----------459999985899
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCCEEEEEECCCCCC-CCCCEEEEEECCEEEEECCHHHHH
Q ss_conf 99998059988998167778899899999999997602--995799990598830-239889999398598913868898
Q 000755 752 IARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL--RSKTVIYVTHQVEFL-PAADLILVMKDGKITQAGKYNDIL 828 (1300)
Q Consensus 752 LARAly~~a~IllLDdp~SalD~~t~~~if~~~i~~~l--~~kTvIlvTH~l~~l-~~aD~Ilvl~~G~I~~~G~~~ell 828 (1300)
||||+..+|+++++||||++||+.+...+.+ .+..+. .+.|+|+|||+++.. ..||+|++|++|+|++.|+.+|+.
T Consensus 151 iARaL~~~P~llllDEPt~~LD~~~~~~i~~-~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~ 229 (242)
T d1oxxk2 151 LARALVKDPSLLLLDEPFSNLDARMRDSARA-LVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLY 229 (242)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCGGGHHHHHH-HHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHCCCCEEECCCCCCCCHHHHHHHHH-HHHHHHHCCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 8757760466145447866799899889989-999998635987999979999999969999999899999986999998
Q ss_pred HCC
Q ss_conf 128
Q 000755 829 NSG 831 (1300)
Q Consensus 829 ~~~ 831 (1300)
..-
T Consensus 230 ~~P 232 (242)
T d1oxxk2 230 DNP 232 (242)
T ss_dssp HSC
T ss_pred HCC
T ss_conf 689
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=3.4e-38 Score=310.86 Aligned_cols=201 Identities=25% Similarity=0.340 Sum_probs=174.0
Q ss_pred EEEEEEEEEEECCCCCCCCEECCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE-----------EEE
Q ss_conf 099996899834999999300111687389399998479999589999973126588637997493-----------899
Q 000755 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KAY 684 (1300)
Q Consensus 616 ~I~i~~~~fsw~~~~~~~~L~~inl~i~~G~~vaIvG~~GSGKSTLL~~ilGe~~~~~G~I~v~g~-----------iay 684 (1300)
.|+++|.+++|+ +..+|+|+||++++||.++++||+|||||||+++|.|.++|++|+|.++|. ++|
T Consensus 6 ~I~v~nlsk~yg---~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~ 82 (239)
T d1v43a3 6 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISM 82 (239)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEE
T ss_pred EEEEEEEEEEEC---CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCCCCEEEE
T ss_conf 499987999999---99998130678879989999999998299999999758999878799916413547700015899
Q ss_pred EECCCCCCC-CCHHHHHHCCCC---CCH----HHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 815886888-878899842999---999----999999998252578864158986423678887897899999999998
Q 000755 685 VAQSPWIQS-GNIEDNILFGKP---MDR----EKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARAL 756 (1300)
Q Consensus 685 v~Q~pwi~~-gTIreNIlfG~~---~d~----~~y~~vl~ac~L~~di~~lp~Gd~T~IGe~G~~LSGGQkqRIaLARAl 756 (1300)
|+|+|-++. .|++||+.|+.. +++ ++..++++.+.|.+.. ......||||||||++||||+
T Consensus 83 v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSGGq~QRvaiAraL 151 (239)
T d1v43a3 83 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELL-----------NRYPAQLSGGQRQRVAVARAI 151 (239)
T ss_dssp EEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGT-----------TSCTTTCCSSCHHHHHHHHHH
T ss_pred EEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHH-----------CCCHHHCCHHHHHHHHHHHHH
T ss_conf 800335342220999999999873999999999999999875985566-----------099546999998899997664
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCCEEEEEECCCCCCC-CCCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf 059988998167778899899999999997602--9957999905988302-39889999398598913868898128
Q 000755 757 YQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL--RSKTVIYVTHQVEFLP-AADLILVMKDGKITQAGKYNDILNSG 831 (1300)
Q Consensus 757 y~~a~IllLDdp~SalD~~t~~~if~~~i~~~l--~~kTvIlvTH~l~~l~-~aD~Ilvl~~G~I~~~G~~~ell~~~ 831 (1300)
..+|+|++||||||+||+.+...+.+ .+..+. .++|+|+|||+++... .||+|++|++|+|++.|+.+|+.+.-
T Consensus 152 ~~~P~iLllDEPts~LD~~~~~~i~~-ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P 228 (239)
T d1v43a3 152 VVEPDVLLMDEPLSNLDAKLRVAMRA-EIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP 228 (239)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHH-HHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred CCCCCCEEECCCCCCCCHHHHHHHHH-HHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 04998243068866689899989999-999998731980799948999999869999999899999985999998689
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=4.4e-38 Score=310.02 Aligned_cols=201 Identities=28% Similarity=0.395 Sum_probs=173.6
Q ss_pred EEEEEEEEEEECCCCCCCCEECCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC---------------
Q ss_conf 09999689983499999930011168738939999847999958999997312658863799749---------------
Q 000755 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--------------- 680 (1300)
Q Consensus 616 ~I~i~~~~fsw~~~~~~~~L~~inl~i~~G~~vaIvG~~GSGKSTLL~~ilGe~~~~~G~I~v~g--------------- 680 (1300)
.|+++|++++|+ +..+|+|+||++++||.++++||+|||||||+++|.|.++|++|+|.++|
T Consensus 3 ~i~v~nl~k~yg---~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~ 79 (240)
T d1g2912 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (240)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred CEEEEEEEEEEC---CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCCC
T ss_conf 189986999989---99998560668869989999999998099999999648788989899999980356644424532
Q ss_pred --EEEEEECCCCCCCC-CHHHHHHCCCC---CC----HHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf --38998158868888-78899842999---99----9999999998252578864158986423678887897899999
Q 000755 681 --TKAYVAQSPWIQSG-NIEDNILFGKP---MD----REKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRI 750 (1300)
Q Consensus 681 --~iayv~Q~pwi~~g-TIreNIlfG~~---~d----~~~y~~vl~ac~L~~di~~lp~Gd~T~IGe~G~~LSGGQkqRI 750 (1300)
.++||+|+|-++.. |++|||.|+.. .+ +++..++++.+.|.+..+ .....||||||||+
T Consensus 80 ~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~-----------~~p~~LSGGqkQRv 148 (240)
T d1g2912 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLN-----------RKPRELSGGQRQRV 148 (240)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTT-----------CCGGGSCHHHHHHH
T ss_pred CCCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHC-----------CCHHHCCHHHHHHH
T ss_conf 2551200221222310116676330687729998999999999998759966762-----------99334999999999
Q ss_pred HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-C-CCEEEEEECCCCCCCC-CCEEEEEECCEEEEECCHHHH
Q ss_conf 999998059988998167778899899999999997602-9-9579999059883023-988999939859891386889
Q 000755 751 QIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-R-SKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDI 827 (1300)
Q Consensus 751 aLARAly~~a~IllLDdp~SalD~~t~~~if~~~i~~~l-~-~kTvIlvTH~l~~l~~-aD~Ilvl~~G~I~~~G~~~el 827 (1300)
+||||+..+|++++|||||++||+.+...+.+ .+..+. + +.|+|+|||+++.... ||+|++|++|+|++.|+.+|+
T Consensus 149 ~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~-~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el 227 (240)
T d1g2912 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRA-ELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227 (240)
T ss_dssp HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHH-HHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHH-HHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHH
T ss_conf 99999826998898258876569899989999-99999863698899995999999996999999989999998599999
Q ss_pred HHCC
Q ss_conf 8128
Q 000755 828 LNSG 831 (1300)
Q Consensus 828 l~~~ 831 (1300)
+...
T Consensus 228 ~~~P 231 (240)
T d1g2912 228 YDKP 231 (240)
T ss_dssp HHSC
T ss_pred HHCC
T ss_conf 8289
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=5.8e-38 Score=309.05 Aligned_cols=199 Identities=33% Similarity=0.437 Sum_probs=174.3
Q ss_pred EEEEEEEEEECCCCCCCCEECCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE-----------EEEE
Q ss_conf 99996899834999999300111687389399998479999589999973126588637997493-----------8998
Q 000755 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KAYV 685 (1300)
Q Consensus 617 I~i~~~~fsw~~~~~~~~L~~inl~i~~G~~vaIvG~~GSGKSTLL~~ilGe~~~~~G~I~v~g~-----------iayv 685 (1300)
|+++|.+++|+ ..+|+|+||++++||.++++||+|||||||+++|.|.++|++|+|.++|. ++||
T Consensus 2 i~v~nlsk~y~----~~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v 77 (229)
T d3d31a2 2 IEIESLSRKWK----NFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFV 77 (229)
T ss_dssp EEEEEEEEECS----SCEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEE
T ss_pred EEEEEEEEEEC----CEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHCCEEE
T ss_conf 89998999949----97884337898799899999899982999999996476888788999567346521657405615
Q ss_pred ECCCCCCC-CCHHHHHHCCCC----CCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 15886888-878899842999----9999999999982525788641589864236788878978999999999980599
Q 000755 686 AQSPWIQS-GNIEDNILFGKP----MDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDA 760 (1300)
Q Consensus 686 ~Q~pwi~~-gTIreNIlfG~~----~d~~~y~~vl~ac~L~~di~~lp~Gd~T~IGe~G~~LSGGQkqRIaLARAly~~a 760 (1300)
+|++-++. -|++||+.|+.. -++++..++++...+.+.. ......||||||||++||||+..+|
T Consensus 78 ~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSGG~~QRvaiAraL~~~P 146 (229)
T d3d31a2 78 YQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLL-----------DRNPLTLSGGEQQRVALARALVTNP 146 (229)
T ss_dssp CTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTT-----------TSCGGGSCHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHH-----------HCCHHHCCHHHHCCHHHHHHHHCCC
T ss_conf 12111174665778888877640553899999999982565557-----------5895547999840140304344367
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCCEEEEEECCCCCCC-CCCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf 88998167778899899999999997602--9957999905988302-39889999398598913868898128
Q 000755 761 DIYLFDDPFSAVDAHTGSHLFKEVLLGLL--RSKTVIYVTHQVEFLP-AADLILVMKDGKITQAGKYNDILNSG 831 (1300)
Q Consensus 761 ~IllLDdp~SalD~~t~~~if~~~i~~~l--~~kTvIlvTH~l~~l~-~aD~Ilvl~~G~I~~~G~~~ell~~~ 831 (1300)
+++|||||||+||+.+...+.+ .+..+. .+.|+|+|||+++... .||+|++|++|+|++.|+.+|+++..
T Consensus 147 ~iLllDEPts~LD~~~~~~i~~-~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P 219 (229)
T d3d31a2 147 KILLLDEPLSALDPRTQENARE-MLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKP 219 (229)
T ss_dssp SEEEEESSSTTSCHHHHHHHHH-HHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSC
T ss_pred CCEEECCCCCCCCHHHHHHHHH-HHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 7144347876799899999999-999998647968999749999999969999999799999986999998689
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8.7e-38 Score=307.69 Aligned_cols=202 Identities=25% Similarity=0.415 Sum_probs=172.8
Q ss_pred EEEEEEEEEECCCCCC-CCEECCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE--------------
Q ss_conf 9999689983499999-9300111687389399998479999589999973126588637997493--------------
Q 000755 617 IEIVDGNFAWDISSNN-PTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 681 (1300)
Q Consensus 617 I~i~~~~fsw~~~~~~-~~L~~inl~i~~G~~vaIvG~~GSGKSTLL~~ilGe~~~~~G~I~v~g~-------------- 681 (1300)
|+++|.+++|+.+... .+|+|+||++++||.++|+|++|||||||+++|.|..+|++|+|.++|.
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHHH
T ss_conf 79982799969998148986150578869979999899989888999987588636677328867685208755511554
Q ss_pred --EEEEECCCCCCCC-CHHHHHHCC-----CCCC--HHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf --8998158868888-788998429-----9999--99999999982525788641589864236788878978999999
Q 000755 682 --KAYVAQSPWIQSG-NIEDNILFG-----KPMD--REKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQ 751 (1300)
Q Consensus 682 --iayv~Q~pwi~~g-TIreNIlfG-----~~~d--~~~y~~vl~ac~L~~di~~lp~Gd~T~IGe~G~~LSGGQkqRIa 751 (1300)
++||+|++-++.. |++|||.|+ .+-+ +++..++++.++|.+.. ......||||||||++
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~-----------~~~~~~LSGG~~QRva 150 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKH-----------DSYPSNLSGGQKQRVA 150 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTT-----------SSCBSCCCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHH-----------HCCHHHCCHHHHHHHH
T ss_conf 16643022522279964999999999984999899999999999976990355-----------4894349999998999
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CC-CCEEEEEECCCCCCCC-CCEEEEEECCEEEEECCHHHHH
Q ss_conf 9999805998899816777889989999999999760-29-9579999059883023-9889999398598913868898
Q 000755 752 IARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LR-SKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDIL 828 (1300)
Q Consensus 752 LARAly~~a~IllLDdp~SalD~~t~~~if~~~i~~~-l~-~kTvIlvTH~l~~l~~-aD~Ilvl~~G~I~~~G~~~ell 828 (1300)
||||+..+|+++++||||++||+.+...+++ .+..+ .+ +.|+|+|||+++.... ||+|++|++|+|++.|+.+|++
T Consensus 151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~-~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~ 229 (240)
T d3dhwc1 151 IARALASNPKVLLCDEATSALDPATTRSILE-LLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVF 229 (240)
T ss_dssp HHHHHHTCCSEEEEESGGGSSCHHHHHHHHH-HHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTT
T ss_pred HHHHHCCCCCEEEECCCCCCCCHHHHHHHHH-HHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 8640105898687446556589888567999-999998646978999838999999869999999799999987999997
Q ss_pred HC
Q ss_conf 12
Q 000755 829 NS 830 (1300)
Q Consensus 829 ~~ 830 (1300)
+.
T Consensus 230 ~~ 231 (240)
T d3dhwc1 230 SH 231 (240)
T ss_dssp CS
T ss_pred HC
T ss_conf 28
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=3.2e-37 Score=303.27 Aligned_cols=197 Identities=29% Similarity=0.418 Sum_probs=161.6
Q ss_pred EEEEEEEEEECCCCC-CCCEECCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE--------------
Q ss_conf 999968998349999-99300111687389399998479999589999973126588637997493--------------
Q 000755 617 IEIVDGNFAWDISSN-NPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 681 (1300)
Q Consensus 617 I~i~~~~fsw~~~~~-~~~L~~inl~i~~G~~vaIvG~~GSGKSTLL~~ilGe~~~~~G~I~v~g~-------------- 681 (1300)
|+++|++++|+.+.. ..+|+|+||++++||.++|+||+|||||||+++|.|..+|++|+|.++|.
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHHH
T ss_conf 89990799948998208987133778849979999889999821655750688777766269999985768855512312
Q ss_pred ---EEEEECCCCCC-CCCHHHHHHCCC------CCC-HHHHHHHHH---HHCCHHHHHHCCCCCCCCCCCCCCCCCHHHH
Q ss_conf ---89981588688-887889984299------999-999999999---8252578864158986423678887897899
Q 000755 682 ---KAYVAQSPWIQ-SGNIEDNILFGK------PMD-REKYDRVLE---ACSLKKDLEILSFGDQTVIGERGINLSGGQK 747 (1300)
Q Consensus 682 ---iayv~Q~pwi~-~gTIreNIlfG~------~~d-~~~y~~vl~---ac~L~~di~~lp~Gd~T~IGe~G~~LSGGQk 747 (1300)
++||+|+|-++ +-|++||+.|+. .++ +++.+++.+ ...|.+.+ ....-.+||||||
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~----------~~~~p~~LSGGqk 151 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERF----------ANHKPNQLSGGQQ 151 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGG----------TTCCGGGSCHHHH
T ss_pred CCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHH----------HCCCHHHCCHHHH
T ss_conf 555778804124176866888775788872247899999999999988762423455----------3488023899999
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCCEEEEEECCCCCCCCCCEEEEEECCEEEEECCH
Q ss_conf 999999998059988998167778899899999999997602--99579999059883023988999939859891386
Q 000755 748 QRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL--RSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKY 824 (1300)
Q Consensus 748 qRIaLARAly~~a~IllLDdp~SalD~~t~~~if~~~i~~~l--~~kTvIlvTH~l~~l~~aD~Ilvl~~G~I~~~G~~ 824 (1300)
|||+||||+..+|++++||||||+||+.++..+++ .+..+. .++|+|+|||+++....||+|++|++|+|++.|+.
T Consensus 152 QRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~-~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 152 QRVAIARALANNPPIILADQPTGALDSKTGEKIMQ-LLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHH-HHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHH-HHHHHHHHHCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCC
T ss_conf 99998756522788899468765469899999999-9999998439999998788899986998999989999995257
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.2e-36 Score=298.68 Aligned_cols=201 Identities=26% Similarity=0.449 Sum_probs=173.4
Q ss_pred EEEEEEEEEEECCCCCCCCEECCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE--------------
Q ss_conf 099996899834999999300111687389399998479999589999973126588637997493--------------
Q 000755 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 681 (1300)
Q Consensus 616 ~I~i~~~~fsw~~~~~~~~L~~inl~i~~G~~vaIvG~~GSGKSTLL~~ilGe~~~~~G~I~v~g~-------------- 681 (1300)
.++++|.+++|. +..+|+||||++++||.++|+|++|||||||+++|.|.+++++|+|.++|.
T Consensus 2 ~Lev~nl~k~yg---~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 78 (258)
T d1b0ua_ 2 KLHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 78 (258)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred EEEEEEEEEEEC---CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHCCC
T ss_conf 699997899989---99988150668869979999989998299999999747667899779999993367752000023
Q ss_pred ------------EEEEECCCCCCC-CCHHHHHHCCC----CCC----HHHHHHHHHHHCCHHHHH-HCCCCCCCCCCCCC
Q ss_conf ------------899815886888-87889984299----999----999999999825257886-41589864236788
Q 000755 682 ------------KAYVAQSPWIQS-GNIEDNILFGK----PMD----REKYDRVLEACSLKKDLE-ILSFGDQTVIGERG 739 (1300)
Q Consensus 682 ------------iayv~Q~pwi~~-gTIreNIlfG~----~~d----~~~y~~vl~ac~L~~di~-~lp~Gd~T~IGe~G 739 (1300)
++||+|+|-++. .|+.|||.|+. ..+ .++..++++.+.|.+... ..|
T Consensus 79 ~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p----------- 147 (258)
T d1b0ua_ 79 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYP----------- 147 (258)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCG-----------
T ss_pred CCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCCCC-----------
T ss_conf 517679997454489983323141101021365657876299989999999999998299524430682-----------
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCCEEEEEECCCCCCCC-CCEEEEEECCE
Q ss_conf 8789789999999999805998899816777889989999999999760-299579999059883023-98899993985
Q 000755 740 INLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LRSKTVIYVTHQVEFLPA-ADLILVMKDGK 817 (1300)
Q Consensus 740 ~~LSGGQkqRIaLARAly~~a~IllLDdp~SalD~~t~~~if~~~i~~~-l~~kTvIlvTH~l~~l~~-aD~Ilvl~~G~ 817 (1300)
.+||||||||++||||+..+|++++|||||++||+.+...|++ .+..+ -+++|+|+|||+++.+.. ||+|++|++|+
T Consensus 148 ~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~-ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~ 226 (258)
T d1b0ua_ 148 VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLR-IMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGK 226 (258)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHH-HHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTE
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHH-HHHHHCCCCCCEEEEECCHHHHHHHCCEEEEEECCE
T ss_conf 2056778889899999843998788524555688788889987-655410368833899489999998699999997999
Q ss_pred EEEECCHHHHHHCC
Q ss_conf 98913868898128
Q 000755 818 ITQAGKYNDILNSG 831 (1300)
Q Consensus 818 I~~~G~~~ell~~~ 831 (1300)
|++.|+.+|++...
T Consensus 227 iv~~g~~~ev~~~P 240 (258)
T d1b0ua_ 227 IEEEGDPEQVFGNP 240 (258)
T ss_dssp EEEEECHHHHHHSC
T ss_pred EEEECCHHHHHHCC
T ss_conf 99984999998389
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=6.5e-36 Score=293.09 Aligned_cols=200 Identities=23% Similarity=0.371 Sum_probs=166.7
Q ss_pred EEEEEEEEEEECCCCCCCCEECCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE--------------
Q ss_conf 099996899834999999300111687389399998479999589999973126588637997493--------------
Q 000755 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 681 (1300)
Q Consensus 616 ~I~i~~~~fsw~~~~~~~~L~~inl~i~~G~~vaIvG~~GSGKSTLL~~ilGe~~~~~G~I~v~g~-------------- 681 (1300)
-++++|.+.+|+ +..+|+||||++++||.++++||+|||||||+++|.|.+++.+|+|.++|.
T Consensus 4 iL~v~nlsk~yg---~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~g 80 (254)
T d1g6ha_ 4 ILRTENIVKYFG---EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 80 (254)
T ss_dssp EEEEEEEEEEET---TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEEEEEEEEC---CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHHC
T ss_conf 699977899979---96887121799889979999999998499999999779768873799999966405699999833
Q ss_pred EEEEECCCCCC-CCCHHHHHHCCCC-----------------CCHHHHHH---HHHHHCCHHHHHHCCCCCCCCCCCCCC
Q ss_conf 89981588688-8878899842999-----------------99999999---999825257886415898642367888
Q 000755 682 KAYVAQSPWIQ-SGNIEDNILFGKP-----------------MDREKYDR---VLEACSLKKDLEILSFGDQTVIGERGI 740 (1300)
Q Consensus 682 iayv~Q~pwi~-~gTIreNIlfG~~-----------------~d~~~y~~---vl~ac~L~~di~~lp~Gd~T~IGe~G~ 740 (1300)
++|++|+|-++ +-|+.|||.+|.. -+++..++ +++...+. ........
T Consensus 81 i~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~ 149 (254)
T d1g6ha_ 81 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLS-----------HLYDRKAG 149 (254)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCG-----------GGTTSBGG
T ss_pred CCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCC-----------HHCCCCHH
T ss_conf 8725776424788742321430133303450456654213532899999999998761963-----------02059535
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCCEEEEEECCCCCC-CCCCEEEEEECCEE
Q ss_conf 789789999999999805998899816777889989999999999760-2995799990598830-23988999939859
Q 000755 741 NLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LRSKTVIYVTHQVEFL-PAADLILVMKDGKI 818 (1300)
Q Consensus 741 ~LSGGQkqRIaLARAly~~a~IllLDdp~SalD~~t~~~if~~~i~~~-l~~kTvIlvTH~l~~l-~~aD~Ilvl~~G~I 818 (1300)
+||||||||++||||+..+|++++|||||++||+.+...+++ .+..+ -+++|+|++||+++.+ ..||+|++|++|+|
T Consensus 150 ~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~-~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~i 228 (254)
T d1g6ha_ 150 ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFN-HVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQI 228 (254)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEE
T ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEE
T ss_conf 699188889999999975927232439765699999999999-9999997899899994769999986999999969989
Q ss_pred EEECCHHHHHHC
Q ss_conf 891386889812
Q 000755 819 TQAGKYNDILNS 830 (1300)
Q Consensus 819 ~~~G~~~ell~~ 830 (1300)
+..|+.+|+.+.
T Consensus 229 v~~g~~~e~~~~ 240 (254)
T d1g6ha_ 229 IAEGRGEEEIKN 240 (254)
T ss_dssp EEEEESHHHHHH
T ss_pred EEEECHHHHHHC
T ss_conf 999668998654
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=1.4e-35 Score=290.35 Aligned_cols=206 Identities=26% Similarity=0.388 Sum_probs=169.3
Q ss_pred CCEEEEEEEEEEECCCCCCCCEECCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE------------
Q ss_conf 53099996899834999999300111687389399998479999589999973126588637997493------------
Q 000755 614 ETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------ 681 (1300)
Q Consensus 614 ~~~I~i~~~~fsw~~~~~~~~L~~inl~i~~G~~vaIvG~~GSGKSTLL~~ilGe~~~~~G~I~v~g~------------ 681 (1300)
+..++++|.+++|. +..+|+|+||++++||.++++||+|||||||+++|.|.++|.+|+|.++|.
T Consensus 4 d~~Lev~~l~k~yg---~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r 80 (240)
T d1ji0a_ 4 DIVLEVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINR 80 (240)
T ss_dssp SEEEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHH
T ss_pred CEEEEEEEEEEEEC---CEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHH
T ss_conf 60799961899989---988883025788899799999999985999999996788888038984244344660888887
Q ss_pred --EEEEECCCCCCCC-CHHHHHHCCCC--CCHHHHHHHH-HHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf --8998158868888-78899842999--9999999999-9825257886415898642367888789789999999999
Q 000755 682 --KAYVAQSPWIQSG-NIEDNILFGKP--MDREKYDRVL-EACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARA 755 (1300)
Q Consensus 682 --iayv~Q~pwi~~g-TIreNIlfG~~--~d~~~y~~vl-~ac~L~~di~~lp~Gd~T~IGe~G~~LSGGQkqRIaLARA 755 (1300)
++|++|++-++.. |++||+.++.. .+.+...+.+ +...+...++ ........+||||||||++||||
T Consensus 81 ~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-------~~~~~~~~~LSGG~~Qrv~iAra 153 (240)
T d1ji0a_ 81 MGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLK-------ERLKQLGGTLSGGEQQMLAIGRA 153 (240)
T ss_dssp TTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHH-------TTTTSBSSSSCHHHHHHHHHHHH
T ss_pred HCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCHH-------HHHHCCHHHCCHHHHHHHHHHHH
T ss_conf 42355676554577636999999888732788899999999998741768-------88758543389999999999999
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCCEEEEEECCCCCC-CCCCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 805998899816777889989999999999760-2995799990598830-23988999939859891386889812
Q 000755 756 LYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LRSKTVIYVTHQVEFL-PAADLILVMKDGKITQAGKYNDILNS 830 (1300)
Q Consensus 756 ly~~a~IllLDdp~SalD~~t~~~if~~~i~~~-l~~kTvIlvTH~l~~l-~~aD~Ilvl~~G~I~~~G~~~ell~~ 830 (1300)
+..+|++++|||||++||+.+...+++ .+..+ .+++|+|++||+++.. ..||+|++|++|+|+..|+.+|+.+.
T Consensus 154 L~~~P~lLllDEPt~gLD~~~~~~i~~-~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 229 (240)
T d1ji0a_ 154 LMSRPKLLMMDEPSLGLAPILVSEVFE-VIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp HTTCCSEEEEECTTTTCCHHHHHHHHH-HHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred HHHCCCEEEECCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCC
T ss_conf 982998740039886799999999999-9999996899899995889999996999999989999998489998429
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=5.8e-35 Score=285.62 Aligned_cols=201 Identities=20% Similarity=0.291 Sum_probs=170.4
Q ss_pred CEEEEEEEEEEECCCCCCCCEECCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE------------E
Q ss_conf 3099996899834999999300111687389399998479999589999973126588637997493------------8
Q 000755 615 TAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------K 682 (1300)
Q Consensus 615 ~~I~i~~~~fsw~~~~~~~~L~~inl~i~~G~~vaIvG~~GSGKSTLL~~ilGe~~~~~G~I~v~g~------------i 682 (1300)
++|+++|.+.+|. +.++|+|+||++++||.++++||+|||||||+++|.|.++|.+|+|.++|. +
T Consensus 1 gaI~v~nl~k~yg---~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i 77 (238)
T d1vpla_ 1 GAVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLI 77 (238)
T ss_dssp CCEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTE
T ss_pred CCEEEEEEEEEEC---CEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHHHE
T ss_conf 9789995899999---9999806256884897999999999999999999966988788879998672446839887218
Q ss_pred EEEECCCCCC-CCCHHHHHHCCCC---CCHH----HHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 9981588688-8878899842999---9999----999999982525788641589864236788878978999999999
Q 000755 683 AYVAQSPWIQ-SGNIEDNILFGKP---MDRE----KYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIAR 754 (1300)
Q Consensus 683 ayv~Q~pwi~-~gTIreNIlfG~~---~d~~----~y~~vl~ac~L~~di~~lp~Gd~T~IGe~G~~LSGGQkqRIaLAR 754 (1300)
+|+||++.++ +-|++||+.|... .+.+ +.+++++.+.|.+ ....+-.+||||||||++|||
T Consensus 78 ~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~lSgG~~qrv~iA~ 146 (238)
T d1vpla_ 78 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGE-----------KIKDRVSTYSKGMVRKLLIAR 146 (238)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGG-----------GGGSBGGGCCHHHHHHHHHHH
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHH-----------HHHHHHHHCCHHHHHHHHHHH
T ss_conf 675001546878667788898998617998999999999998679788-----------885045337998989999999
Q ss_pred HHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCCEEEEEECCCCCCC-CCCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 9805998899816777889989999999999760-29957999905988302-3988999939859891386889812
Q 000755 755 ALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LRSKTVIYVTHQVEFLP-AADLILVMKDGKITQAGKYNDILNS 830 (1300)
Q Consensus 755 Aly~~a~IllLDdp~SalD~~t~~~if~~~i~~~-l~~kTvIlvTH~l~~l~-~aD~Ilvl~~G~I~~~G~~~ell~~ 830 (1300)
|+..+|+|++|||||++||+.+...++ +.+..+ -+++|+|++||+++.+. .||+|++|++|+|+..|+.+++.+.
T Consensus 147 al~~~p~illLDEPt~gLD~~~~~~i~-~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 223 (238)
T d1vpla_ 147 ALMVNPRLAILDEPTSGLDVLNAREVR-KILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 223 (238)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHH-HHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHH-HHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 986599988733798897989999999-99999996599899995989999996999999989999999289999865
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=9.6e-36 Score=291.74 Aligned_cols=209 Identities=21% Similarity=0.288 Sum_probs=181.1
Q ss_pred EEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCE
Q ss_conf 08998424564899894113115996489399999799985999999995177999526999896468889777730218
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLS 1133 (1300)
Q Consensus 1054 ~I~~~nl~~~Y~~~~~~vL~~is~~i~~GekigIVGrTGsGKSTLl~~L~rl~~p~~G~I~Idg~di~~i~l~~lR~~i~ 1133 (1300)
-++++|++.+| +|++|||+|++||.+||+|+||||||||+++|.|+. |.+|+|.++|.|+...+.+.++...+
T Consensus 3 il~~~dv~~~~------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~ 75 (231)
T d1l7vc_ 3 VMQLQDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRA 75 (231)
T ss_dssp EEEEEEECCTT------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEE
T ss_pred EEEEECCCCCC------EECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHHHHHCE
T ss_conf 99998741571------555888899489899999899980999999994887-99559999999998699899986402
Q ss_pred EECCCCCC-CCCCHHHHCCCC--CCCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC--
Q ss_conf 88178877-865478713879--8899999999999839967897210787631236999889469999999998715--
Q 000755 1134 IIPQDPTM-FEGTVRNNLDPL--EEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLK-- 1208 (1300)
Q Consensus 1134 iIpQdp~l-F~gTiR~NLdp~--~~~sd~ei~~aL~~~~L~~~i~~~~~~Ld~~v~e~g~nlS~GQrQll~LARaLL~-- 1208 (1300)
+++|+... |..++.+++... .....+.+.++++.+++.+.... ...+||+|||||+++|||+++
T Consensus 76 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------~~~~LSgG~~Qrv~iA~al~~~~ 144 (231)
T d1l7vc_ 76 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGR-----------STNQLSGGEWQRVRLAAVVLQIT 144 (231)
T ss_dssp EECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTTTTTS-----------BGGGCCHHHHHHHHHHHHHHHHC
T ss_pred EEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHCC-----------CHHHCCHHHHHHHHHHHHHHHHC
T ss_conf 4512135774420988764100146689999999986598767676-----------84456998899999999998517
Q ss_pred -----CCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHHHHHC-CCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf -----998899857876989999999999999826-99279999279024440-4889999498797865954687218
Q 000755 1209 -----KSKVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENK 1280 (1300)
Q Consensus 1209 -----~~~ILiLDEaTa~lD~~Td~~Iq~~i~~~f-~~~TvI~IaHrl~ti~~-~D~Vlvl~~G~i~e~g~p~~Ll~~~ 1280 (1300)
+|+|++|||||+++|+.+...+.+.|++.. .++|||+++|+++.+.. ||||++|++|++++.|+|++++.++
T Consensus 145 p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~~ 223 (231)
T d1l7vc_ 145 PQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPP 223 (231)
T ss_dssp TTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCHH
T ss_pred CCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCCH
T ss_conf 1338998899971877778989999999999999867999999967799999979999999799899988999981886
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=4.1e-35 Score=286.83 Aligned_cols=192 Identities=27% Similarity=0.411 Sum_probs=158.7
Q ss_pred CCEECCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE-----------EEEEECCCCCCC-CCHHHHH
Q ss_conf 9300111687389399998479999589999973126588637997493-----------899815886888-8788998
Q 000755 633 PTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KAYVAQSPWIQS-GNIEDNI 700 (1300)
Q Consensus 633 ~~L~~inl~i~~G~~vaIvG~~GSGKSTLL~~ilGe~~~~~G~I~v~g~-----------iayv~Q~pwi~~-gTIreNI 700 (1300)
..+ |+||+++ ++.++++||+|||||||+++|.|.++|++|+|.++|. ++||+|++-++. -|++|||
T Consensus 14 ~~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl 91 (240)
T d2onka1 14 FRL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNI 91 (240)
T ss_dssp EEE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHH
T ss_pred EEE-EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHH
T ss_conf 999-9999749-97999997999809999999973999896289999999886998992852252314435220155766
Q ss_pred HCCCC-CCH----HHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHH
Q ss_conf 42999-999----9999999982525788641589864236788878978999999999980599889981677788998
Q 000755 701 LFGKP-MDR----EKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAH 775 (1300)
Q Consensus 701 lfG~~-~d~----~~y~~vl~ac~L~~di~~lp~Gd~T~IGe~G~~LSGGQkqRIaLARAly~~a~IllLDdp~SalD~~ 775 (1300)
.||.. ++. ++..++++.+.|.+.. ......||||||||++||||+..+|++++||||||+||++
T Consensus 92 ~~~l~~~~~~~~~~~v~~~l~~~gl~~~~-----------~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~ 160 (240)
T d2onka1 92 AYGLRNVERVERDRRVREMAEKLGIAHLL-----------DRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLK 160 (240)
T ss_dssp HTTCTTSCHHHHHHHHHHHHHTTTCTTTT-----------TCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHHCCCHHHH-----------HCCHHHCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHH
T ss_conf 65323367788999999999863837566-----------5794448999989999987775167706752865558879
Q ss_pred HHHHHHHHHHHHHC--CCCEEEEEECCCCCCC-CCCEEEEEECCEEEEECCHHHHHHCCC-HHHHHH
Q ss_conf 99999999997602--9957999905988302-398899993985989138688981286-179999
Q 000755 776 TGSHLFKEVLLGLL--RSKTVIYVTHQVEFLP-AADLILVMKDGKITQAGKYNDILNSGT-DFMVLV 838 (1300)
Q Consensus 776 t~~~if~~~i~~~l--~~kTvIlvTH~l~~l~-~aD~Ilvl~~G~I~~~G~~~ell~~~~-~~~~l~ 838 (1300)
+...+.+ .+..+. .+.|+|+|||+++... .||+|++|++|+|++.|+.+|+++... ....++
T Consensus 161 ~~~~i~~-~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~~~~v~~fl 226 (240)
T d2onka1 161 TKGVLME-ELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFL 226 (240)
T ss_dssp HHHHHHH-HHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSSHHHHG
T ss_pred HHHHHHH-HHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHCCCCHHHHHHH
T ss_conf 9999999-99999874397699981899999996999999989999999069998329988999985
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=3.9e-33 Score=271.32 Aligned_cols=190 Identities=23% Similarity=0.407 Sum_probs=159.3
Q ss_pred EEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCE
Q ss_conf 08998424564899894113115996489399999799985999999995177999526999896468889777730218
Q 000755 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLS 1133 (1300)
Q Consensus 1054 ~I~~~nl~~~Y~~~~~~vL~~is~~i~~GekigIVGrTGsGKSTLl~~L~rl~~p~~G~I~Idg~di~~i~l~~lR~~i~ 1133 (1300)
.|+++|++++|.. +||+|+||+|++||.+||+|+||||||||+++|.|+++|.+|+|.+||.++. ..|.+++
T Consensus 2 ~lev~~ls~~y~~---~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~-----~~~~~i~ 73 (200)
T d1sgwa_ 2 KLEIRDLSVGYDK---PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKIF 73 (200)
T ss_dssp EEEEEEEEEESSS---EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGEE
T ss_pred EEEEEEEEEEECC---EEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHH-----HHCCCEE
T ss_conf 5999989999399---2884208898599899999999971999999996620567788999989626-----7367089
Q ss_pred EECCCCCCCCC-CHHHHCCC----C-CCCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 88178877865-47871387----9-889999999999983996789721078763123699988946999999999871
Q 000755 1134 IIPQDPTMFEG-TVRNNLDP----L-EEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLL 1207 (1300)
Q Consensus 1134 iIpQdp~lF~g-TiR~NLdp----~-~~~sd~ei~~aL~~~~L~~~i~~~~~~Ld~~v~e~g~nlS~GQrQll~LARaLL 1207 (1300)
++||++.++.. |+++|+.. + ...++++++++++.+++.+. +..+ .+||+|||||+++|||++
T Consensus 74 ~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~----~~LSgG~~qrv~ia~al~ 141 (200)
T d1sgwa_ 74 FLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL--------KKKL----GELSQGTIRRVQLASTLL 141 (200)
T ss_dssp EECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT--------TSBG----GGSCHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCC--------CCCC----CCCCCCHHHHHHHHHHHH
T ss_conf 9950135788828999999999754886379999999987488563--------0126----868971888899999886
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEEEEC
Q ss_conf 599889985787698999999999999982699279999279024440488999949
Q 000755 1208 KKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSH 1264 (1300)
Q Consensus 1208 ~~~~ILiLDEaTa~lD~~Td~~Iq~~i~~~f~~~TvI~IaHrl~ti~~~D~Vlvl~~ 1264 (1300)
.+|++++|||||+++|+++...+.+.|++..++.++++|+|+- .+..||++.+|.+
T Consensus 142 ~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~-~l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 142 VNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE-ELSYCDVNENLHK 197 (200)
T ss_dssp SCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESS-CCTTSSEEEEGGG
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEC-HHHHCCHHHHEEE
T ss_conf 4998999868620169999999999999998679999999916-2544161234010
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.1e-32 Score=263.41 Aligned_cols=195 Identities=23% Similarity=0.385 Sum_probs=164.6
Q ss_pred EEEEEEEEEEECCCCCCCCEECCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE-------------E
Q ss_conf 099996899834999999300111687389399998479999589999973126588637997493-------------8
Q 000755 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------K 682 (1300)
Q Consensus 616 ~I~i~~~~fsw~~~~~~~~L~~inl~i~~G~~vaIvG~~GSGKSTLL~~ilGe~~~~~G~I~v~g~-------------i 682 (1300)
.++++|++. ...|++|||+|++||.++++|++|||||||+++|.|.. +.+|+|.++|. .
T Consensus 3 il~~~dv~~-------~~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~ 74 (231)
T d1l7vc_ 3 VMQLQDVAE-------STRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHR 74 (231)
T ss_dssp EEEEEEECC-------TTTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHE
T ss_pred EEEEECCCC-------CCEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHHHHHC
T ss_conf 999987415-------71555888899489899999899980999999994887-9955999999999869989998640
Q ss_pred EEEECCCCC-CCCCHHHHHHCCCC--CCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC-
Q ss_conf 998158868-88878899842999--99999999999825257886415898642367888789789999999999805-
Q 000755 683 AYVAQSPWI-QSGNIEDNILFGKP--MDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQ- 758 (1300)
Q Consensus 683 ayv~Q~pwi-~~gTIreNIlfG~~--~d~~~y~~vl~ac~L~~di~~lp~Gd~T~IGe~G~~LSGGQkqRIaLARAly~- 758 (1300)
+|++|+... +..++.+|+.++.. ...++.+++++.+.+.+ .++.+..+||||||||++||||+++
T Consensus 75 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----------~~~~~~~~LSgG~~Qrv~iA~al~~~ 143 (231)
T d1l7vc_ 75 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDD-----------KLGRSTNQLSGGEWQRVRLAAVVLQI 143 (231)
T ss_dssp EEECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTT-----------TTTSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCHH-----------HHCCCHHHCCHHHHHHHHHHHHHHHH
T ss_conf 2451213577442098876410014668999999998659876-----------76768445699889999999999851
Q ss_pred ------CCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCCEEEEEECCCCCC-CCCCEEEEEECCEEEEECCHHHHHHC
Q ss_conf ------998899816777889989999999999760-2995799990598830-23988999939859891386889812
Q 000755 759 ------DADIYLFDDPFSAVDAHTGSHLFKEVLLGL-LRSKTVIYVTHQVEFL-PAADLILVMKDGKITQAGKYNDILNS 830 (1300)
Q Consensus 759 ------~a~IllLDdp~SalD~~t~~~if~~~i~~~-l~~kTvIlvTH~l~~l-~~aD~Ilvl~~G~I~~~G~~~ell~~ 830 (1300)
+|+|++|||||++||+.....+. +.+..+ .+++|+|++||+++.+ ..||+|++|++|+|++.|+.+|++..
T Consensus 144 ~p~~~p~p~llllDEPt~gLD~~~~~~i~-~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~ 222 (231)
T d1l7vc_ 144 TPQANPAGQLLLLDEPMNSLDVAQQSALD-KILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222 (231)
T ss_dssp CTTTCTTCCEEEESSCSTTCCHHHHHHHH-HHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCH
T ss_pred CCCCCCCCCEEEECCCCCCCCHHHHHHHH-HHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCC
T ss_conf 71338998899971877778989999999-99999986799999996779999997999999979989998899998188
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.97 E-value=2.8e-30 Score=249.05 Aligned_cols=182 Identities=24% Similarity=0.428 Sum_probs=145.8
Q ss_pred EEEEEEEEEEECCCCCCCCEECCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC--------EEEEEEC
Q ss_conf 09999689983499999930011168738939999847999958999997312658863799749--------3899815
Q 000755 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--------TKAYVAQ 687 (1300)
Q Consensus 616 ~I~i~~~~fsw~~~~~~~~L~~inl~i~~G~~vaIvG~~GSGKSTLL~~ilGe~~~~~G~I~v~g--------~iayv~Q 687 (1300)
.++++|.+|+|+ +++|+|+||++++|+.++|+||+|||||||+++|.|.++|++|+|.++| .++|+||
T Consensus 2 ~lev~~ls~~y~----~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~~~~ 77 (200)
T d1sgwa_ 2 KLEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPE 77 (200)
T ss_dssp EEEEEEEEEESS----SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECS
T ss_pred EEEEEEEEEEEC----CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHHHCCCEEEEEE
T ss_conf 599998999939----9288420889859989999999997199999999662056778899998962673670899950
Q ss_pred CCCCCC-CCHHHHHH-----CCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 886888-87889984-----299999999999999825257886415898642367888789789999999999805998
Q 000755 688 SPWIQS-GNIEDNIL-----FGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDAD 761 (1300)
Q Consensus 688 ~pwi~~-gTIreNIl-----fG~~~d~~~y~~vl~ac~L~~di~~lp~Gd~T~IGe~G~~LSGGQkqRIaLARAly~~a~ 761 (1300)
++.++. -|++||+. +|...++++..++++...+.+ +.++-.+||||||||++||||++.+|+
T Consensus 78 ~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~------------~~~~~~~LSgG~~qrv~ia~al~~~~~ 145 (200)
T d1sgwa_ 78 EIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD------------LKKKLGELSQGTIRRVQLASTLLVNAE 145 (200)
T ss_dssp SCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC------------TTSBGGGSCHHHHHHHHHHHHTTSCCS
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCC------------CCCCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 13578882899999999975488637999999998748856------------301268689718888999998864998
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEEEC
Q ss_conf 899816777889989999999999760299579999059883023988999939
Q 000755 762 IYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKD 815 (1300)
Q Consensus 762 IllLDdp~SalD~~t~~~if~~~i~~~l~~kTvIlvTH~l~~l~~aD~Ilvl~~ 815 (1300)
++||||||++||..+...+++. +....+++++++++|+- -+..||.+.+|.+
T Consensus 146 llllDEPt~gLD~~~~~~i~~~-l~~~~~~~~~~ii~~~~-~l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 146 IYVLDDPVVAIDEDSKHKVLKS-ILEILKEKGIVIISSRE-ELSYCDVNENLHK 197 (200)
T ss_dssp EEEEESTTTTSCTTTHHHHHHH-HHHHHHHHSEEEEEESS-CCTTSSEEEEGGG
T ss_pred EEEECCCCCCCCHHHHHHHHHH-HHHHHHCCCEEEEEEEC-HHHHCCHHHHEEE
T ss_conf 9998686201699999999999-99998679999999916-2544161234010
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.95 E-value=3.1e-22 Score=186.16 Aligned_cols=308 Identities=7% Similarity=0.039 Sum_probs=239.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999996999999999999999999999999999999742887520468999999999999999999999999999999
Q 000755 291 TKALFFSAWKEIVFTAILALLYTLANYVGPYLIDTFVQYLNGEREFKNEGYVLVSTFFVAKIVECLAQRHWMFRLQVAGI 370 (1300)
Q Consensus 291 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~g~~l~~~l~~~~l~~~l~~~~~~~~~~~~g~ 370 (1300)
++.+.+.+|+.+++..++.++..++....|++++.++|....... ....+.+++.+++..++..++.....+...+.+.
T Consensus 7 l~~~~~~~k~~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 85 (319)
T d3b60a2 7 LWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTD-RSVLLWMPLVVIGLMILRGITSYISSYCISWVSG 85 (319)
T ss_dssp HHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTT-HHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999999999999998744687-7899999999999999764533546654434310
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999997169900014789989999999999999999979-36799999999888899978877999999999
Q 000755 371 KMRSVLVSMVYNKGLTLSCQAKQSYTSGEIINFMTVDAERIGDFGWY-MHDPWLVILQVSLALLILYKNLGLASIAALFA 449 (1300)
Q Consensus 371 ~ir~~L~~~Iy~K~L~ls~~~~~~~~~G~Iinlis~D~~~i~~~~~~-~~~~~~~plqi~i~l~lL~~~lG~a~l~gl~~ 449 (1300)
++...++..+|+|.++++...+++.++|+++++++.|++.+.++... ........+.++.+++.++......+++.++.
T Consensus 86 ~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~li~l~~ 165 (319)
T d3b60a2 86 KVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVL 165 (319)
T ss_dssp HHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHH
T ss_pred CCCCCHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 00110004777765010111102333221111121212100001111120011233445668888876520021025668
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999993299999848279999999999999999999999997999999
Q 000755 450 TVLIMLTNFPLGRLQENFQDKLMGSKDKRMKVTSEILRNMRILKLQGWEMKFLSKIIELRKIEAGWLKKFLYTGAMTSFV 529 (1300)
Q Consensus 450 ~ii~~~~~~~~~k~~~~~q~~~~~~~D~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~ 529 (1300)
.++...+.....++..+..++.++..++..+...|.++|+++||.+++|+.+.++..+..++..+...+...........
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (319)
T d3b60a2 166 APIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPI 245 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999988766668778789887644567788777624872353111010245666665313567788888777740640
Q ss_pred HHHHHHH--HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9999899--999999999983587688889999999999999999999999999999999999999745778
Q 000755 530 FWGAPTF--VSVATFGACMLLGIPLESGKILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIASFLCLDD 599 (1300)
Q Consensus 530 ~~~~p~~--v~~~tf~~~~~~~~~Lt~~~vft~lalf~~L~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e 599 (1300)
......+ +.+..++.+....+.++.|.+++++.+...+..|+..+++.++.+.++.+|.+|+.++++.|+
T Consensus 246 ~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~~ 317 (319)
T d3b60a2 246 IQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQ 317 (319)
T ss_dssp HHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 100000023799999999998099789999999999999999999999999999999999999999966998
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.95 E-value=3.3e-22 Score=186.04 Aligned_cols=306 Identities=16% Similarity=0.126 Sum_probs=237.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH----HH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999996999999999999999999999999999999742887520----46--899999999999999999999999999
Q 000755 293 ALFFSAWKEIVFTAILALLYTLANYVGPYLIDTFVQYLNGEREFK----NE--GYVLVSTFFVAKIVECLAQRHWMFRLQ 366 (1300)
Q Consensus 293 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~----~~--g~~l~~~l~~~~l~~~l~~~~~~~~~~ 366 (1300)
.+.+.||+.++...++.++..++....|++++.++|.+....... .. .+.++.++++..++..++.....+...
T Consensus 7 ~~~k~~k~~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 86 (323)
T d2hyda2 7 QFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQ 86 (323)
T ss_dssp HHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999998626774215568999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999716990001478998999999999999999997-93679999999988889997887799999
Q 000755 367 VAGIKMRSVLVSMVYNKGLTLSCQAKQSYTSGEIINFMTVDAERIGDFGW-YMHDPWLVILQVSLALLILYKNLGLASIA 445 (1300)
Q Consensus 367 ~~g~~ir~~L~~~Iy~K~L~ls~~~~~~~~~G~Iinlis~D~~~i~~~~~-~~~~~~~~plqi~i~l~lL~~~lG~a~l~ 445 (1300)
+.+.+++..++..+|+|.++++...++++++|+++|++++|++.+.++.. .+...+...+.++++++.++......+++
T Consensus 87 ~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li 166 (323)
T d2hyda2 87 WTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLA 166 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99985567788887665402332100012221100011113321001113454201114665334654400001468889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999329999984827999999999999999999999999799
Q 000755 446 ALFATVLIMLTNFPLGRLQENFQDKLMGSKDKRMKVTSEILRNMRILKLQGWEMKFLSKIIELRKIEAGWLKKFLYTGAM 525 (1300)
Q Consensus 446 gl~~~ii~~~~~~~~~k~~~~~q~~~~~~~D~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~ 525 (1300)
.+++.++...+...+.++..+..++..+..++..+.+.|.++|+++||.+++|+.+.+++.+..++..+...+.......
T Consensus 167 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~ 246 (323)
T d2hyda2 167 ALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAY 246 (323)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 99988777777764123332026778989999997878875597023467641110023302231111015677652000
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999999989--999999999998358768888999999999999999999999999999999999999974577
Q 000755 526 TSFVFWGAPT--FVSVATFGACMLLGIPLESGKILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIASFLCLD 598 (1300)
Q Consensus 526 ~~~~~~~~p~--~v~~~tf~~~~~~~~~Lt~~~vft~lalf~~L~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~ 598 (1300)
.......... .+.+..++.+....+.++.|.+++++.++..+..|+..++..+..+.++.+|.+||.++|+++
T Consensus 247 ~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd~e 321 (323)
T d2hyda2 247 SFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDED 321 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 011111012055899999999999849988999999999999999999999999999999999999999997799
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.48 E-value=3.6e-15 Score=130.99 Aligned_cols=172 Identities=12% Similarity=0.062 Sum_probs=114.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEECCCCCCCCCCHHHHCCCCCCCCHHHHH
Q ss_conf 39999979998599999999517799952699989646888977773021888178877865478713879889999999
Q 000755 1083 MKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEEYKDEEIW 1162 (1300)
Q Consensus 1083 ekigIVGrTGsGKSTLl~~L~rl~~p~~G~I~Idg~di~~i~l~~lR~~i~iIpQdp~lF~gTiR~NLdp~~~~sd~ei~ 1162 (1300)
.||+|+|++|||||||++.+.+.+++..|.+.+++.+....+.+.......+.++.+.++..+...+.....
T Consensus 1 ~ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 72 (178)
T d1ye8a1 1 MKIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGS-------- 72 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETT--------
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_conf 989999899938999999998148888646998771328888765311233667778875411345544302--------
Q ss_pred HHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC--CHHHHHHHHHHHHHHCCC
Q ss_conf 999983996789721078763123699988946999999999871599889985787698--999999999999982699
Q 000755 1163 EALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASV--DTATDNLIQQTLRQHFSD 1240 (1300)
Q Consensus 1163 ~aL~~~~L~~~i~~~~~~Ld~~v~e~g~nlS~GQrQll~LARaLL~~~~ILiLDEaTa~l--D~~Td~~Iq~~i~~~f~~ 1240 (1300)
.+.... . ..+++|++++.++++++.++|+++++|||+... +.+....+.+.+++ .+
T Consensus 73 -----~~~~~~-----------~----~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~--~~ 130 (178)
T d1ye8a1 73 -----YGVNVQ-----------Y----FEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD--PN 130 (178)
T ss_dssp -----EEECHH-----------H----HHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC--TT
T ss_pred -----HHCCCC-----------H----HHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHCC--CC
T ss_conf -----303762-----------5----6653201378999999740997423027773100457999999987505--79
Q ss_pred CEEEEEECCHHHHHCCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHH
Q ss_conf 2799992790244404889999498797865954687218976999999
Q 000755 1241 CTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLVA 1289 (1300)
Q Consensus 1241 ~TvI~IaHrl~ti~~~D~Vlvl~~G~i~e~g~p~~Ll~~~~s~f~~lv~ 1289 (1300)
+|+|.++|+......+|++..+.+|++++.++. +.+..+..+++
T Consensus 131 ~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~~-----nrd~~~~~i~~ 174 (178)
T d1ye8a1 131 VNVVATIPIRDVHPLVKEIRRLPGAVLIELTPE-----NRDVILEDILS 174 (178)
T ss_dssp SEEEEECCSSCCSHHHHHHHTCTTCEEEECCTT-----TTTTHHHHHHH
T ss_pred CEEEEEECCHHHHHHHCEEEEEECCEEEEECCC-----CHHHHHHHHHH
T ss_conf 789999744778986365998719999998996-----47889999999
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.25 E-value=3.8e-13 Score=115.16 Aligned_cols=148 Identities=11% Similarity=0.082 Sum_probs=100.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEE--EE-----------EECCCCCCCCCHHHHHHCCCCCCHHHHH
Q ss_conf 3999984799995899999731265886379974938--99-----------8158868888788998429999999999
Q 000755 646 MRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK--AY-----------VAQSPWIQSGNIEDNILFGKPMDREKYD 712 (1300)
Q Consensus 646 ~~vaIvG~~GSGKSTLL~~ilGe~~~~~G~I~v~g~i--ay-----------v~Q~pwi~~gTIreNIlfG~~~d~~~y~ 712 (1300)
.+++|+||+|||||||+++|+|++++..|.+...+.. .+ .++.+.+...+...+..+++.
T Consensus 1 ~ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 73 (178)
T d1ye8a1 1 MKIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSY------- 73 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTE-------
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_conf 9899998999389999999981488886469987713288887653112336677788754113455443023-------
Q ss_pred HHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCC--
Q ss_conf 999982525788641589864236788878978999999999980599889981677788998999999999976029--
Q 000755 713 RVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLR-- 790 (1300)
Q Consensus 713 ~vl~ac~L~~di~~lp~Gd~T~IGe~G~~LSGGQkqRIaLARAly~~a~IllLDdp~SalD~~t~~~if~~~i~~~l~-- 790 (1300)
.+...-..+++|+++|.+++++...+|+++++|||....+. . ... ...+...++
T Consensus 74 ---------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~-~-~~~-~~~l~~~l~~~ 129 (178)
T d1ye8a1 74 ---------------------GVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELF-S-KKF-RDLVRQIMHDP 129 (178)
T ss_dssp ---------------------EECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGG-C-HHH-HHHHHHHHTCT
T ss_pred ---------------------HCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHH-H-HHH-HHHHHHHHCCC
T ss_conf ---------------------03762566532013789999997409974230277731004-5-799-99999875057
Q ss_pred CCEEEEEECCCCCCCCCCEEEEEECCEEEEECCH
Q ss_conf 9579999059883023988999939859891386
Q 000755 791 SKTVIYVTHQVEFLPAADLILVMKDGKITQAGKY 824 (1300)
Q Consensus 791 ~kTvIlvTH~l~~l~~aD~Ilvl~~G~I~~~G~~ 824 (1300)
++|+|+++|+....+.+|++..+++|++.+.++.
T Consensus 130 ~~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~~ 163 (178)
T d1ye8a1 130 NVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPE 163 (178)
T ss_dssp TSEEEEECCSSCCSHHHHHHHTCTTCEEEECCTT
T ss_pred CCEEEEEECCHHHHHHHCEEEEEECCEEEEECCC
T ss_conf 9789999744778986365998719999998996
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.22 E-value=7.5e-11 Score=97.29 Aligned_cols=73 Identities=27% Similarity=0.352 Sum_probs=61.2
Q ss_pred CCCCHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHHHHHCCCEEEEE
Q ss_conf 98894699999999987----15998899857876989999999999999826-992799992790244404889999
Q 000755 1190 ENWSMGQRQLVCLGRVL----LKKSKVLVLDEATASVDTATDNLIQQTLRQHF-SDCTVITIAHRITSVIDSDMVLLL 1262 (1300)
Q Consensus 1190 ~nlS~GQrQll~LARaL----L~~~~ILiLDEaTa~lD~~Td~~Iq~~i~~~f-~~~TvI~IaHrl~ti~~~D~Vlvl 1262 (1300)
..+|+|||.+++||-.+ ..++++++||||++++|..+...+.+.|++.. .++-+|+|||+......+|+++..
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEE
T ss_conf 332230479999999999954799977999688777899999999999999728998899995878999736617999
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.07 E-value=1.5e-08 Score=79.26 Aligned_cols=72 Identities=18% Similarity=0.278 Sum_probs=56.3
Q ss_pred CCCHHHHHHHHHHHH--H--CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCCEEEEEECCCCCCCCCCEEEEE
Q ss_conf 789789999999999--8--059988998167778899899999999997602-995799990598830239889999
Q 000755 741 NLSGGQKQRIQIARA--L--YQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-RSKTVIYVTHQVEFLPAADLILVM 813 (1300)
Q Consensus 741 ~LSGGQkqRIaLARA--l--y~~a~IllLDdp~SalD~~t~~~if~~~i~~~l-~~kTvIlvTH~l~~l~~aD~Ilvl 813 (1300)
.||||||.+++||-. + +.++++++||||.++||+.....+.+ .+.... .+.-+|++||++.++..||.++.+
T Consensus 332 ~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~-~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 332 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAA-YIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHH-HHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHCCCCEEEEEECCHHHHHHCCCEEEE
T ss_conf 3223047999999999995479997799968877789999999999-9999728998899995878999736617999
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.98 E-value=2.1e-08 Score=78.16 Aligned_cols=79 Identities=24% Similarity=0.334 Sum_probs=66.3
Q ss_pred CCCHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEE--EEC
Q ss_conf 8894699999999987----1599889985787698999999999999982699279999279024440488999--949
Q 000755 1191 NWSMGQRQLVCLGRVL----LKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLL--LSH 1264 (1300)
Q Consensus 1191 nlS~GQrQll~LARaL----L~~~~ILiLDEaTa~lD~~Td~~Iq~~i~~~f~~~TvI~IaHrl~ti~~~D~Vlv--l~~ 1264 (1300)
.+|.||+++..++..+ ..++.++++|||-+++++.....+.+.|++..++.-+|++||+...+..+|++.. +++
T Consensus 219 ~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~~~ 298 (308)
T d1e69a_ 219 LLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVN 298 (308)
T ss_dssp GSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEEEEEC
T ss_conf 02577766777776655654226744554320335797899999999998554887999989889997324289999969
Q ss_pred C--EEEE
Q ss_conf 8--7978
Q 000755 1265 G--IIEE 1269 (1300)
Q Consensus 1265 G--~i~e 1269 (1300)
| +|++
T Consensus 299 g~s~i~~ 305 (308)
T d1e69a_ 299 GVSAIVP 305 (308)
T ss_dssp SCEEEEE
T ss_pred CEEEEEE
T ss_conf 9999999
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.73 E-value=1.8e-06 Score=63.07 Aligned_cols=146 Identities=14% Similarity=0.098 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 34530588999999984512148899999850139998716368999999999982042489999888999999999999
Q 000755 890 DEQYYIPSARELSRLVGVCKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFHIAGAMEWLCFRLDMLSS 969 (1300)
Q Consensus 890 ~~~~y~~~~r~l~rl~~~~~spi~~~~~etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~ 969 (1300)
+..++.+..++..+......+...+++.|+++|..+||+|+.++.+.+++.+..+...+..........+.......+..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~ 256 (323)
T d2hyda2 177 TVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTD 256 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCH
T ss_conf 77641233320267789899999978788755970234676411100233022311110156776520000111110120
Q ss_pred HHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 999999999-988148865688999999999999999999999999998878799999975228899
Q 000755 970 LTFAFSLVL-LISIPKGVIEPAIAGLAVTYGLNLNMLQAWVIWNLCNLENKIISVERILQYTCISSE 1035 (1300)
Q Consensus 970 ~~~~~~~~~-~~~~~~~~~~~~~~gl~l~y~l~~~~~~~~~i~~~~~le~~~~sveRi~~y~~~~~E 1035 (1300)
+.......+ ......|.+++|.....+.+...+..++..+...+.++...+.|.||+.++.+.++|
T Consensus 257 ~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd~e~e 323 (323)
T d2hyda2 257 IGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYD 323 (323)
T ss_dssp HHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCS
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 5589999999999984998899999999999999999999999999999999999999999779998
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.69 E-value=1.5e-06 Score=63.64 Aligned_cols=77 Identities=26% Similarity=0.344 Sum_probs=62.7
Q ss_pred CCCCHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEE--E
Q ss_conf 87897899999999998----05998899816777889989999999999760299579999059883023988999--9
Q 000755 740 INLSGGQKQRIQIARAL----YQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILV--M 813 (1300)
Q Consensus 740 ~~LSGGQkqRIaLARAl----y~~a~IllLDdp~SalD~~t~~~if~~~i~~~l~~kTvIlvTH~l~~l~~aD~Ilv--l 813 (1300)
..+|+|||+...++..+ ...+.++++|||-++|++...+.+. +.+....++.-+|++||.+.++..+|+++. +
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~-~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~ 296 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFK-RLLKENSKHTQFIVITHNKIVMEAADLLHGVTM 296 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHH-HHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHH-HHHHHHCCCCEEEEEECCHHHHHHCCCEEEEEE
T ss_conf 1025777667777766556542267445543203357978999999-999985548879999898899973242899999
Q ss_pred ECCE
Q ss_conf 3985
Q 000755 814 KDGK 817 (1300)
Q Consensus 814 ~~G~ 817 (1300)
++|.
T Consensus 297 ~~g~ 300 (308)
T d1e69a_ 297 VNGV 300 (308)
T ss_dssp SSSC
T ss_pred ECCE
T ss_conf 6999
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.69 E-value=5.1e-06 Score=59.55 Aligned_cols=47 Identities=2% Similarity=-0.058 Sum_probs=16.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 65688999999999999999999999999998878799999975228
Q 000755 986 VIEPAIAGLAVTYGLNLNMLQAWVIWNLCNLENKIISVERILQYTCI 1032 (1300)
Q Consensus 986 ~~~~~~~gl~l~y~l~~~~~~~~~i~~~~~le~~~~sveRi~~y~~~ 1032 (1300)
.+++|.....+.|...+..++..+...+.++...+.|.+|+.++.+.
T Consensus 269 ~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~ 315 (319)
T d3b60a2 269 SLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDS 315 (319)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 97899999999999999999999999999999999999999999669
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=97.23 E-value=0.0051 Score=36.07 Aligned_cols=71 Identities=15% Similarity=0.099 Sum_probs=39.2
Q ss_pred CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEE
Q ss_conf 97899999999998059988998167778899899999999997602995799990598830239889999
Q 000755 743 SGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVM 813 (1300)
Q Consensus 743 SGGQkqRIaLARAly~~a~IllLDdp~SalD~~t~~~if~~~i~~~l~~kTvIlvTH~l~~l~~aD~Ilvl 813 (1300)
...++..+..+...|.++|+++++-..+.-+.....+.+.+.+.....++.+|+|.+..+..+.....-..
T Consensus 64 ~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~~~~~~~~~ 134 (161)
T d2gj8a1 64 DEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEV 134 (161)
T ss_dssp SHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCEEEEE
T ss_pred CCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHH
T ss_conf 52024789999999874133201102565420345554445554201410102046544433558879872
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=96.91 E-value=0.0025 Score=38.55 Aligned_cols=129 Identities=18% Similarity=0.165 Sum_probs=68.3
Q ss_pred CCEECCEEEEECCCEEEEECCCCCCHHHHHHHHHCCC-CCCCCEEEECCEEEEEECCCCCCC-CCHHHHHHCCCC-C--C
Q ss_conf 9300111687389399998479999589999973126-588637997493899815886888-878899842999-9--9
Q 000755 633 PTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEV-PKISGTLKLCGTKAYVAQSPWIQS-GNIEDNILFGKP-M--D 707 (1300)
Q Consensus 633 ~~L~~inl~i~~G~~vaIvG~~GSGKSTLL~~ilGe~-~~~~G~I~v~g~iayv~Q~pwi~~-gTIreNIlfG~~-~--d 707 (1300)
.+=+|+.+ . ++.+.|.||+.|||||+|+.+.=-. --..|- .+...-+-++.--.|+. -...|++.-|.. | +
T Consensus 26 ~VpNdi~~--~-~~~~iiTGpN~~GKSt~lk~i~l~~ilAq~G~-~vpA~~~~i~~~d~I~~~~~~~d~~~~~~StF~~e 101 (224)
T d1ewqa2 26 FVPNDLEM--A-HELVLITGPNMAGKSTFLRQTALIALLAQVGS-FVPAEEAHLPLFDGIYTRIGASDDLAGGKSTFMVE 101 (224)
T ss_dssp CCCEEEEE--S-SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTC-CBSSSEEEECCCSEEEEECCC------CCSHHHHH
T ss_pred EECCEEEE--C-CCEEEEECCCCCCCCHHHHHHHHHHHHHHCCC-EEECCCEEEEECCEEEEEECCCCCCCCCCCHHHHH
T ss_conf 54555884--7-86799978873453234556589999985250-46137519940116999987776023783078986
Q ss_pred HHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999999982525788641589864236788878978999999999980599889981677788998999999999976
Q 000755 708 REKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLG 787 (1300)
Q Consensus 708 ~~~y~~vl~ac~L~~di~~lp~Gd~T~IGe~G~~LSGGQkqRIaLARAly~~a~IllLDdp~SalD~~t~~~if~~~i~~ 787 (1300)
-.+..++++. ..+..++|+||.+++-|+.-+..+....+..
T Consensus 102 l~~~~~il~~---------------------------------------~~~~sLvliDE~~~gT~~~eg~ala~aile~ 142 (224)
T d1ewqa2 102 MEEVALILKE---------------------------------------ATENSLVLLDEVGRGTSSLDGVAIATAVAEA 142 (224)
T ss_dssp HHHHHHHHHH---------------------------------------CCTTEEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCC---------------------------------------CCCCCEEEECCCCCCCCHHHHCCHHHHHHHH
T ss_conf 7889877502---------------------------------------8977278554545686233200258888888
Q ss_pred HCC-CCEEEEEECCCCCC
Q ss_conf 029-95799990598830
Q 000755 788 LLR-SKTVIYVTHQVEFL 804 (1300)
Q Consensus 788 ~l~-~kTvIlvTH~l~~l 804 (1300)
+.+ +.+++++||..+..
T Consensus 143 L~~~~~~~i~tTH~~eL~ 160 (224)
T d1ewqa2 143 LHERRAYTLFATHYFELT 160 (224)
T ss_dssp HHHHTCEEEEECCCHHHH
T ss_pred HHHCCCCEEEEEECHHHH
T ss_conf 862376137865202333
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.91 E-value=0.011 Score=33.42 Aligned_cols=35 Identities=23% Similarity=0.213 Sum_probs=21.2
Q ss_pred CCEECCEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 93001116873893999984799995899999731
Q 000755 633 PTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILG 667 (1300)
Q Consensus 633 ~~L~~inl~i~~G~~vaIvG~~GSGKSTLL~~ilG 667 (1300)
+.|+++.--+.+|+++.|.|++|+|||+|+.-++-
T Consensus 23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 66888746978980899994799979999999997
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.80 E-value=0.0025 Score=38.54 Aligned_cols=130 Identities=15% Similarity=0.135 Sum_probs=66.1
Q ss_pred CCEECCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCC-CCCCEEEECCEEEEEECCCCCCC-CCHHHHHHCCCC-CC--
Q ss_conf 93001116873893999984799995899999731265-88637997493899815886888-878899842999-99--
Q 000755 633 PTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVP-KISGTLKLCGTKAYVAQSPWIQS-GNIEDNILFGKP-MD-- 707 (1300)
Q Consensus 633 ~~L~~inl~i~~G~~vaIvG~~GSGKSTLL~~ilGe~~-~~~G~I~v~g~iayv~Q~pwi~~-gTIreNIlfG~~-~d-- 707 (1300)
++=+|+++. +.+....|.||+.|||||+|+.+.=-.- -..|. .+...-+-++---.|+. -...|++.-|.. |.
T Consensus 30 ~VpNdi~l~-~~~~~~iiTGpN~~GKSt~lk~i~l~~~laq~G~-~VpA~~a~~~~~d~I~~~~~~~d~~~~~~S~F~~E 107 (234)
T d1wb9a2 30 FIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS-YVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVE 107 (234)
T ss_dssp CCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC-CBSSSEEEECCCCEEEEEEC-----------CHHH
T ss_pred CCCEEEEEC-CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCC-EEECCCEECCCCHHHEEEECCCCCCCCCHHHHHHH
T ss_conf 264057988-9953999954673136899998799999987297-67417666134420234874675343653189999
Q ss_pred HHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999999982525788641589864236788878978999999999980599889981677788998999999999976
Q 000755 708 REKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLG 787 (1300)
Q Consensus 708 ~~~y~~vl~ac~L~~di~~lp~Gd~T~IGe~G~~LSGGQkqRIaLARAly~~a~IllLDdp~SalD~~t~~~if~~~i~~ 787 (1300)
-.+..++++. -.+..++|+||+++.-++.-+..+....+..
T Consensus 108 ~~~~~~il~~---------------------------------------~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~ 148 (234)
T d1wb9a2 108 MTETANILHN---------------------------------------ATEYSLVLMDEIGRGTSTYDGLSLAWACAEN 148 (234)
T ss_dssp HHHHHHHHHH---------------------------------------CCTTEEEEEESCCCCSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---------------------------------------CCCCCEEEECCCCCCCCHHHHHHHHHHHHHH
T ss_conf 9999999974---------------------------------------5466088532223587745666789876454
Q ss_pred HC-CC-CEEEEEECCCCC
Q ss_conf 02-99-579999059883
Q 000755 788 LL-RS-KTVIYVTHQVEF 803 (1300)
Q Consensus 788 ~l-~~-kTvIlvTH~l~~ 803 (1300)
+. +. ..+++.||..+.
T Consensus 149 l~~~~~~~~i~tTH~~~l 166 (234)
T d1wb9a2 149 LANKIKALTLFATHYFEL 166 (234)
T ss_dssp HHHTTCCEEEEECSCGGG
T ss_pred HHCCCCCEEEEECCHHHH
T ss_conf 320454428985246877
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.70 E-value=0.00037 Score=44.98 Aligned_cols=40 Identities=28% Similarity=0.384 Sum_probs=29.8
Q ss_pred EEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 5996489399999799985999999995177999526999
Q 000755 1076 TCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVI 1115 (1300)
Q Consensus 1076 s~~i~~GekigIVGrTGsGKSTLl~~L~rl~~p~~G~I~I 1115 (1300)
...+..+..+-|+|+|||||||++++|++.+++..=-|.|
T Consensus 160 ~~~v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti 199 (323)
T d1g6oa_ 160 KDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 199 (323)
T ss_dssp HHHHHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred HHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEC
T ss_conf 9999837888999403566257899986530145623311
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.41 E-value=9e-05 Score=49.79 Aligned_cols=163 Identities=12% Similarity=0.049 Sum_probs=73.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEECCCCCCCCCCHHHHCCC------CCCC
Q ss_conf 3999997999859999999951779995269998964688897777302188817887786547871387------9889
Q 000755 1083 MKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDP------LEEY 1156 (1300)
Q Consensus 1083 ekigIVGrTGsGKSTLl~~L~rl~~p~~G~I~Idg~di~~i~l~~lR~~i~iIpQdp~lF~gTiR~NLdp------~~~~ 1156 (1300)
..|.|+|+.|+|||||+..+.+.+....+.+.+.+.+........+......+.|+...+.....++... ....
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVGLEPPPGKRECRVGQYV 81 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCEEETTSSEEEEEEEETTSCEEEEEECCCCCCSSSCCEESSSSE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 69999889997199999999999997799799998455012221146541234330246654300103444143223110
Q ss_pred CHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999999998399678972107876312369998894699999999987159988998578769899999999999998
Q 000755 1157 KDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQ 1236 (1300)
Q Consensus 1157 sd~ei~~aL~~~~L~~~i~~~~~~Ld~~v~e~g~nlS~GQrQll~LARaLL~~~~ILiLDEaTa~lD~~Td~~Iq~~i~~ 1236 (1300)
.+.+..+.+....+.........+.+..+.+.....+......+.+.+.++..++++++...+..-+... .+.+.+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 159 (189)
T d2i3ba1 82 VDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKPL--ALVEEIRN 159 (189)
T ss_dssp ECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEECCCCCSSCC--TTHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHH--HHHHHHHC
T ss_conf 0377777788999999988762189706861433330535999999999854686599961555775569--99999867
Q ss_pred HCCCCEEEEEEC
Q ss_conf 269927999927
Q 000755 1237 HFSDCTVITIAH 1248 (1300)
Q Consensus 1237 ~f~~~TvI~IaH 1248 (1300)
..+.+++.++.
T Consensus 160 -~~~~~~~~lt~ 170 (189)
T d2i3ba1 160 -RKDVKVFNVTK 170 (189)
T ss_dssp -TCCSEEEECCS
T ss_pred -CCCCEEEEECH
T ss_conf -89974999786
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=96.38 E-value=0.0097 Score=33.92 Aligned_cols=112 Identities=21% Similarity=0.150 Sum_probs=69.2
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCEEEEEECCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCH
Q ss_conf 389399998479999589999973126588637-9974938998158868888788998429999999999999982525
Q 000755 643 FHGMRVAVCGTVGSGKSSLLSCILGEVPKISGT-LKLCGTKAYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLK 721 (1300)
Q Consensus 643 ~~G~~vaIvG~~GSGKSTLL~~ilGe~~~~~G~-I~v~g~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~ac~L~ 721 (1300)
.++-++.|+||+||||||.+.+++.+++..... +.+...+-|.- ++
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPiE~~~--~~------------------------------- 202 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDI--DG------------------------------- 202 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCC--SS-------------------------------
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCC--CC-------------------------------
T ss_conf 410548987678777447799986662578746999626743456--78-------------------------------
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 78864158986423678887897899999999998059988998167778899899999999997602995799990598
Q 000755 722 KDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQV 801 (1300)
Q Consensus 722 ~di~~lp~Gd~T~IGe~G~~LSGGQkqRIaLARAly~~a~IllLDdp~SalD~~t~~~if~~~i~~~l~~kTvIlvTH~l 801 (1300)
--++++.+. .|+..--+|..++-+||||++..|.- |..|++..++ ....|..|+-.-|--
T Consensus 203 --------~~q~~v~~~-----~~~~~~~~l~~~lR~dPDvi~igEiR---d~~ta~~a~~----aa~tGhlV~tTlHa~ 262 (401)
T d1p9ra_ 203 --------IGQTQVNPR-----VDMTFARGLRAILRQDPDVVMVGEIR---DLETAQIAVQ----ASLTGHLVMSTLHTN 262 (401)
T ss_dssp --------SEEEECBGG-----GTBCHHHHHHHHGGGCCSEEEESCCC---SHHHHHHHHH----HHHTTCEEEEEECCS
T ss_pred --------CCEEEECCC-----CCCCHHHHHHHHHHHCCCEEEECCCC---CHHHHHHHHH----HHHCCCEEEEEECCC
T ss_conf --------870265587-----67799999999984138889845768---7599999999----972498589983367
Q ss_pred CCCCCC
Q ss_conf 830239
Q 000755 802 EFLPAA 807 (1300)
Q Consensus 802 ~~l~~a 807 (1300)
+.....
T Consensus 263 ~a~~~~ 268 (401)
T d1p9ra_ 263 TAVGAV 268 (401)
T ss_dssp SSHHHH
T ss_pred CHHHHH
T ss_conf 667665
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.16 E-value=0.033 Score=29.71 Aligned_cols=177 Identities=12% Similarity=0.077 Sum_probs=79.5
Q ss_pred EEEEEEEEECCCEEEEECCCCCCHHHHHHHHHC-CCCCCCCEEEECCEECCCCCHHHHHCCC-EEECCCCCCCCCCHHHH
Q ss_conf 131159964893999997999859999999951-7799952699989646888977773021-88817887786547871
Q 000755 1072 LRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFR-IVEPTAGEIVIDGINISSIGLHDLRSRL-SIIPQDPTMFEGTVRNN 1149 (1300)
Q Consensus 1072 L~~is~~i~~GekigIVGrTGsGKSTLl~~L~r-l~~p~~G~I~Idg~di~~i~l~~lR~~i-~iIpQdp~lF~gTiR~N 1149 (1300)
|+.+.--+.+|+.+-|.|++|+||||++.-+.. +..-..-.+.+-. ...+.+....|+ +...+-+.--..+.+.
T Consensus 25 lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s---~E~~~~~~~~r~~~~~~~~~~~~~~~~~~- 100 (277)
T d1cr2a_ 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM---LEESVEETAEDLIGLHNRVRLRQSDSLKR- 100 (277)
T ss_dssp HHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEE---SSSCHHHHHHHHHHHHTTCCGGGCHHHHH-
T ss_pred HHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEE---ECCCHHHHHHHHHHHHHCCCCHHHCCCCC-
T ss_conf 88874697898089999479997999999999726553366345764---01111357769999864587101012222-
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCC-----CCH
Q ss_conf 387988999999999998399678972107876312369998894699999999987159988998578769-----899
Q 000755 1150 LDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATAS-----VDT 1224 (1300)
Q Consensus 1150 Ldp~~~~sd~ei~~aL~~~~L~~~i~~~~~~Ld~~v~e~g~nlS~GQrQll~LARaLL~~~~ILiLDEaTa~-----lD~ 1224 (1300)
..++...+.++.......-.-...+........+.-..+-.-.--.+++++++|--+.- -+.
T Consensus 101 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvID~l~~l~~~~~~~~ 167 (277)
T d1cr2a_ 101 -------------EIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGESD 167 (277)
T ss_dssp -------------HHHHTSHHHHHHHHHHSSSCEEEECCC-CCCHHHHHHHHHHHHHTTCCSEEEEEEEEC---------
T ss_pred -------------CHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCC
T ss_conf -------------2145677888988740352146621433106899999865432136762599705421203465443
Q ss_pred --HHHHHHHHHHHHHC--CCCEEEEEECCH----------------HHH-------HCCCEEEEEECC
Q ss_conf --99999999999826--992799992790----------------244-------404889999498
Q 000755 1225 --ATDNLIQQTLRQHF--SDCTVITIAHRI----------------TSV-------IDSDMVLLLSHG 1265 (1300)
Q Consensus 1225 --~Td~~Iq~~i~~~f--~~~TvI~IaHrl----------------~ti-------~~~D~Vlvl~~G 1265 (1300)
+....+.+.+++.. .+|+|++++|=- ..+ ..+|.|+.+..-
T Consensus 168 ~~~~~~~~~~~l~~lA~~~~i~vi~~~q~~r~~~~~~~~~~~~~~~~~~~gS~~i~~~ad~vl~l~r~ 235 (277)
T d1cr2a_ 168 ERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERN 235 (277)
T ss_dssp -CHHHHHHHHHHHHHHHHHCCEEEEEEECC---------------------CHHHHHHCSEEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHCCEEEEEEEC
T ss_conf 06778999999999765016552031035632244455433332112123430015038699999846
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.89 E-value=0.0056 Score=35.74 Aligned_cols=22 Identities=45% Similarity=0.762 Sum_probs=13.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 3999997999859999999951
Q 000755 1083 MKTGIVGRTGSGKSTLIQTLFR 1104 (1300)
Q Consensus 1083 ekigIVGrTGsGKSTLl~~L~r 1104 (1300)
=+|||+|++|+|||||+++|++
T Consensus 9 ~kV~iiG~~~~GKSTLin~l~~ 30 (186)
T d1mkya2 9 IKVAIVGRPNVGKSTLFNAILN 30 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHC
T ss_conf 8899999999999999999977
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.78 E-value=0.0042 Score=36.72 Aligned_cols=34 Identities=24% Similarity=0.385 Sum_probs=21.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 8939999979998599999999517799952699
Q 000755 1081 GGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIV 1114 (1300)
Q Consensus 1081 ~GekigIVGrTGsGKSTLl~~L~rl~~p~~G~I~ 1114 (1300)
+|....++|.||.|||||+++|.+-.....|.|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCCC
T ss_conf 6980899788987788887730535550106842
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.70 E-value=0.051 Score=28.29 Aligned_cols=148 Identities=12% Similarity=0.090 Sum_probs=74.0
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCH
Q ss_conf 73893999984799995899999731265886379974938998158868888788998429999999999999982525
Q 000755 642 VFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLK 721 (1300)
Q Consensus 642 i~~G~~vaIvG~~GSGKSTLL~~ilGe~~~~~G~I~v~g~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~ac~L~ 721 (1300)
+++|..+.|.|++|||||+|+.-++-......+ .+.|++-+ .+.+.+.+-.+....
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~------~~~~is~e-----------------~~~~~~~~~~~~~~~- 78 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVENACANKE------RAILFAYE-----------------ESRAQLLRNAYSWGM- 78 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHHTTTC------CEEEEESS-----------------SCHHHHHHHHHTTSC-
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCC------CCCEEECC-----------------CCHHHHHHHHHHCCC-
T ss_conf 869849999918999999999999999987232------44112126-----------------799999999998299-
Q ss_pred HHHH-HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC-CCCEEEEECCCCCC---CHHHHHHHHHHHHHHH-CCCCEEE
Q ss_conf 7886-415898642367888789789999999999805-99889981677788---9989999999999760-2995799
Q 000755 722 KDLE-ILSFGDQTVIGERGINLSGGQKQRIQIARALYQ-DADIYLFDDPFSAV---DAHTGSHLFKEVLLGL-LRSKTVI 795 (1300)
Q Consensus 722 ~di~-~lp~Gd~T~IGe~G~~LSGGQkqRIaLARAly~-~a~IllLDdp~Sal---D~~t~~~if~~~i~~~-l~~kTvI 795 (1300)
|.+ ....|.............. +...-.+.+++.+ ++++++.|...... +..............+ ..+.|++
T Consensus 79 -~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~i~~~~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i 156 (242)
T d1tf7a2 79 -DFEEMERQNLLKIVCAYPESAGL-EDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGL 156 (242)
T ss_dssp -CHHHHHHTTSEEECCCCGGGSCH-HHHHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred -CHHHHHHCCCEEEEEEECCHHHH-HHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf -86998545861799730001017-9999999999984088533220431430489999999999999999998698399
Q ss_pred EEECCCC----------CC-CCCCEEEEEEC
Q ss_conf 9905988----------30-23988999939
Q 000755 796 YVTHQVE----------FL-PAADLILVMKD 815 (1300)
Q Consensus 796 lvTH~l~----------~l-~~aD~Ilvl~~ 815 (1300)
++.|... .+ ..+|-|+.++.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~~ 187 (242)
T d1tf7a2 157 FTNTSDQFMGAHSITDSHISTITDTIILLQY 187 (242)
T ss_dssp EEEECSSSSCCCSSCSSCCTTTCSEEEEEEE
T ss_pred EEEEEEEECCCCCCCCCCEEEECCEEEEEEE
T ss_conf 9985675125544577640464216999998
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.54 E-value=0.0046 Score=36.41 Aligned_cols=28 Identities=43% Similarity=0.588 Sum_probs=23.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 9999847999958999997312658863
Q 000755 647 RVAVCGTVGSGKSSLLSCILGEVPKISG 674 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilGe~~~~~G 674 (1300)
.++|+|.+|+|||||+++|+|.-....|
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~~~~~ 85 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGNEEEG 85 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTT
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 7999899999789999999588867775
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.47 E-value=0.028 Score=30.35 Aligned_cols=34 Identities=26% Similarity=0.251 Sum_probs=26.8
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 4893999997999859999999951779995269
Q 000755 1080 PGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEI 1113 (1300)
Q Consensus 1080 ~~GekigIVGrTGsGKSTLl~~L~rl~~p~~G~I 1113 (1300)
.++--+-+.|+|||||||.+.++.+.......+|
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i 189 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNI 189 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCE
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCCCCCEE
T ss_conf 4105489876787774477999866625787469
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.40 E-value=0.0081 Score=34.53 Aligned_cols=34 Identities=29% Similarity=0.345 Sum_probs=30.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 8939999847999958999997312658863799
Q 000755 644 HGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLK 677 (1300)
Q Consensus 644 ~G~~vaIvG~~GSGKSTLL~~ilGe~~~~~G~I~ 677 (1300)
+|+.++++|++|.|||||+++|+|+.....|.|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCCC
T ss_conf 6980899788987788887730535550106842
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=95.37 E-value=0.065 Score=27.46 Aligned_cols=142 Identities=13% Similarity=0.160 Sum_probs=60.7
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCC----CCCCCEEEECCEEEEEECCCCCCCCCHHHHHH-CCCCCCHHHHHHHHH
Q ss_conf 7389399998479999589999973126----58863799749389981588688887889984-299999999999999
Q 000755 642 VFHGMRVAVCGTVGSGKSSLLSCILGEV----PKISGTLKLCGTKAYVAQSPWIQSGNIEDNIL-FGKPMDREKYDRVLE 716 (1300)
Q Consensus 642 i~~G~~vaIvG~~GSGKSTLL~~ilGe~----~~~~G~I~v~g~iayv~Q~pwi~~gTIreNIl-fG~~~d~~~y~~vl~ 716 (1300)
+.+|+++.|+|+.|+|||+|+..+.--+ +...+...-.+.+.|+.-+-. ...+++.+. .+..++.+.+.....
T Consensus 26 ~~pg~~~~i~G~~G~GKS~l~l~la~~ia~g~~~~~~~~~~~~~vl~~~~E~~--~~~~~~Rl~~~~~~~~~~~~~~~~~ 103 (274)
T d1nlfa_ 26 MVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDP--PTAIHHRLHALGAHLSAEERQAVAD 103 (274)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSC--HHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCH--HHHHHHHHHHHHHCCCHHHHHCCCC
T ss_conf 55895899992899989999999999997699721112357873689851234--9999999999862368666531233
Q ss_pred HHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC-----CHHHHHHHHHHHHHHHC--
Q ss_conf 82525788641589864236788878978999999999980599889981677788-----99899999999997602--
Q 000755 717 ACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAV-----DAHTGSHLFKEVLLGLL-- 789 (1300)
Q Consensus 717 ac~L~~di~~lp~Gd~T~IGe~G~~LSGGQkqRIaLARAly~~a~IllLDdp~Sal-----D~~t~~~if~~~i~~~l-- 789 (1300)
.. ...+ ..+...... -....-.+.+ ...+++++++|-..... |......++.. +..+.
T Consensus 104 ~~------~~~~-----~~~~~~~~~--~~~~~~~~~~-~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~-l~~la~~ 168 (274)
T d1nlfa_ 104 GL------LIQP-----LIGSLPNIM--APEWFDGLKR-AAEGRRLMVLDTLRRFHIEEENASGPMAQVIGR-MEAIAAD 168 (274)
T ss_dssp HE------EECC-----CTTSCCCTT--SHHHHHHHHH-HHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHH-HHHHHHH
T ss_pred CC------EECC-----CCCCCCHHH--HHHHHHHHHH-HCCCCCEEECCCHHHHCCCCCCCHHHHHHHHHH-HHHHHHC
T ss_conf 32------3214-----567420357--8999999887-526765896281354226652322568999988-7777644
Q ss_pred CCCEEEEEECC
Q ss_conf 99579999059
Q 000755 790 RSKTVIYVTHQ 800 (1300)
Q Consensus 790 ~~kTvIlvTH~ 800 (1300)
.+.|++++.|.
T Consensus 169 ~~~~vi~v~H~ 179 (274)
T d1nlfa_ 169 TGCSIVFLHHA 179 (274)
T ss_dssp HCCEEEEEEEC
T ss_pred CCCCEEHHHHC
T ss_conf 79754013100
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.23 E-value=0.071 Score=27.13 Aligned_cols=28 Identities=32% Similarity=0.406 Sum_probs=23.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8939999847999958999997312658
Q 000755 644 HGMRVAVCGTVGSGKSSLLSCILGEVPK 671 (1300)
Q Consensus 644 ~G~~vaIvG~~GSGKSTLL~~ilGe~~~ 671 (1300)
...-+.+.||+|+|||++.+++..++..
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~~~~~ 71 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAGEAKV 71 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHCCC
T ss_conf 8886786689988822899999998299
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.20 E-value=0.027 Score=30.46 Aligned_cols=29 Identities=28% Similarity=0.289 Sum_probs=24.2
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 87389399998479999589999973126
Q 000755 641 KVFHGMRVAVCGTVGSGKSSLLSCILGEV 669 (1300)
Q Consensus 641 ~i~~G~~vaIvG~~GSGKSTLL~~ilGe~ 669 (1300)
-+++|+.+.|.|++|||||+|..-++-..
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~~~~~ 60 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTLAVMV 60 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 95588799998589898899999999986
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.19 E-value=0.0068 Score=35.12 Aligned_cols=37 Identities=32% Similarity=0.625 Sum_probs=29.7
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 7389399998479999589999973126588637997
Q 000755 642 VFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKL 678 (1300)
Q Consensus 642 i~~G~~vaIvG~~GSGKSTLL~~ilGe~~~~~G~I~v 678 (1300)
++.+.-+.|+|++||||||+++++++++++..=-+.+
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti 199 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 199 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred HHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEC
T ss_conf 9837888999403566257899986530145623311
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.16 E-value=0.006 Score=35.51 Aligned_cols=22 Identities=27% Similarity=0.597 Sum_probs=15.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999847999958999997312
Q 000755 647 RVAVCGTVGSGKSSLLSCILGE 668 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilGe 668 (1300)
.++|+|++|+|||||+++|.|+
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHCCC
T ss_conf 9999899998799999985298
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.15 E-value=0.011 Score=33.54 Aligned_cols=21 Identities=33% Similarity=0.406 Sum_probs=12.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999859999999951
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFR 1104 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~r 1104 (1300)
.|.|+|++||||||+++.|.+
T Consensus 4 lIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 4 IILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999989999999999999999
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.15 E-value=0.0068 Score=35.12 Aligned_cols=23 Identities=43% Similarity=0.637 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998479999589999973126
Q 000755 647 RVAVCGTVGSGKSSLLSCILGEV 669 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilGe~ 669 (1300)
.++++|.+|+|||||+++|+|+-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=95.09 E-value=0.078 Score=26.85 Aligned_cols=60 Identities=12% Similarity=0.186 Sum_probs=36.4
Q ss_pred HHCCCCCEEEEECCCCCC-----CHHHHHHHHHHHHHHC--CCCEEEEEECCHH------------------HHH-CCCE
Q ss_conf 871599889985787698-----9999999999999826--9927999927902------------------444-0488
Q 000755 1205 VLLKKSKVLVLDEATASV-----DTATDNLIQQTLRQHF--SDCTVITIAHRIT------------------SVI-DSDM 1258 (1300)
Q Consensus 1205 aLL~~~~ILiLDEaTa~l-----D~~Td~~Iq~~i~~~f--~~~TvI~IaHrl~------------------ti~-~~D~ 1258 (1300)
.-..+++++++|--++.. |......+.+.++... .+||+++++|--. .+. .+|.
T Consensus 128 ~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~~K~~~~~~~~~~~~~~~Gssai~~~a~~ 207 (274)
T d1nlfa_ 128 RAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKGAAMMGAGDQQQASRGSSVLVDNIRW 207 (274)
T ss_dssp HHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CTGGGCSC
T ss_pred HHCCCCCEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCE
T ss_conf 75267658962813542266523225689999887777644797540131005554446886653356427778742558
Q ss_pred EEEEEC
Q ss_conf 999949
Q 000755 1259 VLLLSH 1264 (1300)
Q Consensus 1259 Vlvl~~ 1264 (1300)
++.|..
T Consensus 208 v~~l~r 213 (274)
T d1nlfa_ 208 QSYLSS 213 (274)
T ss_dssp EEEEEE
T ss_pred EEEEEE
T ss_conf 999983
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.05 E-value=0.061 Score=27.67 Aligned_cols=25 Identities=36% Similarity=0.630 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9399998479999589999973126
Q 000755 645 GMRVAVCGTVGSGKSSLLSCILGEV 669 (1300)
Q Consensus 645 G~~vaIvG~~GSGKSTLL~~ilGe~ 669 (1300)
+=.++|+|.+|+|||||+++++|.-
T Consensus 8 ~~kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 8 AIKVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 8889999999999999999997787
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.02 E-value=0.075 Score=26.98 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=12.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998479999589999973126
Q 000755 648 VAVCGTVGSGKSSLLSCILGEV 669 (1300)
Q Consensus 648 vaIvG~~GSGKSTLL~~ilGe~ 669 (1300)
+.+.||.|+||||+.++++.++
T Consensus 36 lll~Gp~G~GKTt~~~~la~~l 57 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLESI 57 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9988999998899999999762
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.01 E-value=0.0069 Score=35.08 Aligned_cols=27 Identities=30% Similarity=0.662 Sum_probs=16.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 939999847999958999997312658
Q 000755 645 GMRVAVCGTVGSGKSSLLSCILGEVPK 671 (1300)
Q Consensus 645 G~~vaIvG~~GSGKSTLL~~ilGe~~~ 671 (1300)
|.+++++||+||||||+.+.+..+++.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 749999899999999999999845899
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=94.83 E-value=0.049 Score=28.42 Aligned_cols=22 Identities=41% Similarity=0.649 Sum_probs=15.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999847999958999997312
Q 000755 647 RVAVCGTVGSGKSSLLSCILGE 668 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilGe 668 (1300)
-++|+|.+|+|||||..+++..
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~ 25 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYK 25 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999948898099999999997
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.77 E-value=0.093 Score=26.23 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=15.5
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 3893999984799995899999731
Q 000755 643 FHGMRVAVCGTVGSGKSSLLSCILG 667 (1300)
Q Consensus 643 ~~G~~vaIvG~~GSGKSTLL~~ilG 667 (1300)
++-+++.++|..||||||+.+.++.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9998999989999989999999997
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.74 E-value=0.029 Score=30.24 Aligned_cols=43 Identities=12% Similarity=0.275 Sum_probs=30.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCCCC
Q ss_conf 99998479999589999973126588637997493899815886888
Q 000755 647 RVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQS 693 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilGe~~~~~G~I~v~g~iayv~Q~pwi~~ 693 (1300)
+++|+|++||||||+.+.|...+....+ .-++..++++-+...
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~----~~~v~~Is~D~F~~~ 124 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPE----HRRVELITTDGFLHP 124 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTT----CCCEEEEEGGGGBCC
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCC----CCCEEEEEEEEEECC
T ss_conf 9999689999876899999999730468----996599952156898
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.60 E-value=0.0035 Score=37.38 Aligned_cols=34 Identities=26% Similarity=0.368 Sum_probs=23.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 8939999979998599999999517799952699
Q 000755 1081 GGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIV 1114 (1300)
Q Consensus 1081 ~GekigIVGrTGsGKSTLl~~L~rl~~p~~G~I~ 1114 (1300)
+|....++|.||.|||||+++|.+-.....|.|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCC
T ss_conf 3564999877873487898751517676403555
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.60 E-value=0.0065 Score=35.26 Aligned_cols=32 Identities=19% Similarity=0.201 Sum_probs=26.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 99998479999589999973126588637997
Q 000755 647 RVAVCGTVGSGKSSLLSCILGEVPKISGTLKL 678 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilGe~~~~~G~I~v 678 (1300)
.+.|+|++|+|||||++.+...+....+.+.+
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~ 34 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDG 34 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf 99998899971999999999999977997999
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=94.55 E-value=0.1 Score=25.85 Aligned_cols=47 Identities=11% Similarity=0.183 Sum_probs=33.2
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCHHHHH
Q ss_conf 5998899857876989999999999999826--9927999927902444
Q 000755 1208 KKSKVLVLDEATASVDTATDNLIQQTLRQHF--SDCTVITIAHRITSVI 1254 (1300)
Q Consensus 1208 ~~~~ILiLDEaTa~lD~~Td~~Iq~~i~~~f--~~~TvI~IaHrl~ti~ 1254 (1300)
.+..++++||...+-|++.-..+-..+-+++ .++++++++|..+...
T Consensus 113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred CCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECHHHHH
T ss_conf 9772785545456862332002588888888623761378652023332
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=94.48 E-value=0.032 Score=29.87 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=18.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89399998479999589999973126
Q 000755 644 HGMRVAVCGTVGSGKSSLLSCILGEV 669 (1300)
Q Consensus 644 ~G~~vaIvG~~GSGKSTLL~~ilGe~ 669 (1300)
.|++++++|++||||||+.+.+...+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98599998899998899999999995
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=94.41 E-value=0.014 Score=32.60 Aligned_cols=24 Identities=46% Similarity=0.663 Sum_probs=21.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 939999979998599999999517
Q 000755 1082 GMKTGIVGRTGSGKSTLIQTLFRI 1105 (1300)
Q Consensus 1082 GekigIVGrTGsGKSTLl~~L~rl 1105 (1300)
|=||+++|++|+|||||+++|.+.
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 989999899999899999999688
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=94.37 E-value=0.038 Score=29.31 Aligned_cols=35 Identities=23% Similarity=0.293 Sum_probs=28.9
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 87389399998479999589999973126588637
Q 000755 641 KVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGT 675 (1300)
Q Consensus 641 ~i~~G~~vaIvG~~GSGKSTLL~~ilGe~~~~~G~ 675 (1300)
-+++|..+.+.|++|||||||...+........|.
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~ 84 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKT 84 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 96673589980577747899999999998708987
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.31 E-value=0.017 Score=31.98 Aligned_cols=28 Identities=36% Similarity=0.539 Sum_probs=24.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8939999847999958999997312658
Q 000755 644 HGMRVAVCGTVGSGKSSLLSCILGEVPK 671 (1300)
Q Consensus 644 ~G~~vaIvG~~GSGKSTLL~~ilGe~~~ 671 (1300)
+|.+++|+||+||||+||.+.++-..+.
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p~ 28 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQPL 28 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 9809999999999999999999863986
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=94.31 E-value=0.013 Score=32.98 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=15.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999997999859999999951779
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFRIVE 1107 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~rl~~ 1107 (1300)
.++|+|.+|||||||++.|.+-+.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~ 27 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899989999999999999
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.27 E-value=0.12 Score=25.41 Aligned_cols=88 Identities=18% Similarity=0.132 Sum_probs=48.8
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEECCCCCCCCCCHHHHCCCCCCCCHH
Q ss_conf 48939999979998599999999517799952699989646888977773021888178877865478713879889999
Q 000755 1080 PGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEEYKDE 1159 (1300)
Q Consensus 1080 ~~GekigIVGrTGsGKSTLl~~L~rl~~p~~G~I~Idg~di~~i~l~~lR~~i~iIpQdp~lF~gTiR~NLdp~~~~sd~ 1159 (1300)
+.-+.|-++|..||||||+...++.. .|.+.|+. .++++ -+
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~~----~~~~~i~~--------D~~~~---------------------------~~ 52 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLVS----AGYVHVNR--------DTLGS---------------------------WQ 52 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTGG----GTCEEEEH--------HHHCS---------------------------HH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH----CCCEEECH--------HHHHH---------------------------HH
T ss_conf 99989999899999899999999976----59789760--------77778---------------------------88
Q ss_pred HHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHH-HHHHHHHCCCCCEEEEE
Q ss_conf 9999999839967897210787631236999889469999-99999871599889985
Q 000755 1160 EIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQL-VCLGRVLLKKSKVLVLD 1216 (1300)
Q Consensus 1160 ei~~aL~~~~L~~~i~~~~~~Ld~~v~e~g~nlS~GQrQl-l~LARaLL~~~~ILiLD 1216 (1300)
.+.+.++. .+..|.+..+ ...|++..+|+. +.+|+-.=.+..++.+|
T Consensus 53 ~~~~~~~~--------~l~~g~~vIi--D~t~~~~~~R~~~~~~a~~~~~~~~~v~l~ 100 (172)
T d1yj5a2 53 RCVSSCQA--------ALRQGKRVVI--DNTNPDVPSRARYIQCAKDAGVPCRCFNFC 100 (172)
T ss_dssp HHHHHHHH--------HHHTTCCEEE--ESCCCSHHHHHHHHHHHHHHTCCEEEEEEC
T ss_pred HHHHHHHH--------HHHCCCCCEE--ECCCCCHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 99999999--------9977999555--176799999999999998558887999948
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=94.24 E-value=0.0099 Score=33.82 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=23.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 99998479999589999973126588
Q 000755 647 RVAVCGTVGSGKSSLLSCILGEVPKI 672 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilGe~~~~ 672 (1300)
.++|+|++|||||||++.|+.++...
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~ 29 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCAR 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 89999189998999999999999977
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.17 E-value=0.015 Score=32.46 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=14.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999847999958999997312
Q 000755 647 RVAVCGTVGSGKSSLLSCILGE 668 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilGe 668 (1300)
.++++|++|+|||||+++|.|+
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998899999999689
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=94.16 E-value=0.078 Score=26.81 Aligned_cols=27 Identities=26% Similarity=0.327 Sum_probs=18.7
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 389399998479999589999973126
Q 000755 643 FHGMRVAVCGTVGSGKSSLLSCILGEV 669 (1300)
Q Consensus 643 ~~G~~vaIvG~~GSGKSTLL~~ilGe~ 669 (1300)
..+.++.++|++||||||+.+.|...+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=94.12 E-value=0.0095 Score=33.96 Aligned_cols=41 Identities=29% Similarity=0.343 Sum_probs=28.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCC
Q ss_conf 89399998479999589999973126588637997493899815886
Q 000755 644 HGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPW 690 (1300)
Q Consensus 644 ~G~~vaIvG~~GSGKSTLL~~ilGe~~~~~G~I~v~g~iayv~Q~pw 690 (1300)
+.-.++|+|+.|+|||||+..+...+....- ++|.+.=+|-
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~------~vavlavDps 93 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGL------KVAVIAVDPS 93 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHTTC------CEEEEEECCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCC------CEEEECCCCC
T ss_conf 8328974389999899999999999975698------3322037776
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.05 E-value=0.011 Score=33.33 Aligned_cols=21 Identities=38% Similarity=0.580 Sum_probs=12.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999859999999951
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFR 1104 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~r 1104 (1300)
.|||+|++++|||||+++|++
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~ 23 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSS 23 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEE
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 699989999879999999968
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.88 E-value=0.022 Score=31.09 Aligned_cols=20 Identities=50% Similarity=0.753 Sum_probs=13.6
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99997999859999999951
Q 000755 1085 TGIVGRTGSGKSTLIQTLFR 1104 (1300)
Q Consensus 1085 igIVGrTGsGKSTLl~~L~r 1104 (1300)
|+|+|++|+|||||+++|++
T Consensus 8 I~iiG~~nvGKSSLin~L~~ 27 (179)
T d1egaa1 8 IAIVGRPNVGKSTLLNKLLG 27 (179)
T ss_dssp EEEECSSSSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99997999989999999958
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.87 E-value=0.015 Score=32.50 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 99999799985999999995177999
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFRIVEPT 1109 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~rl~~p~ 1109 (1300)
.+||+|+.|||||||+..|.+.+...
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~~~ 28 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAVRE 28 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 99998099998999999999999867
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=93.79 E-value=0.014 Score=32.78 Aligned_cols=20 Identities=40% Similarity=0.753 Sum_probs=12.1
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99997999859999999951
Q 000755 1085 TGIVGRTGSGKSTLIQTLFR 1104 (1300)
Q Consensus 1085 igIVGrTGsGKSTLl~~L~r 1104 (1300)
|||+|++|+|||||+++|.+
T Consensus 4 VaivG~~nvGKSTLin~L~~ 23 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTR 23 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCS
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99989999989999999968
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=93.73 E-value=0.15 Score=24.68 Aligned_cols=18 Identities=33% Similarity=0.438 Sum_probs=9.1
Q ss_pred EEEEECCCCCCHHHHHHH
Q ss_conf 999997999859999999
Q 000755 1084 KTGIVGRTGSGKSTLIQT 1101 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~ 1101 (1300)
.+.+||+||+||||.+-=
T Consensus 13 vi~lvGptGvGKTTTiAK 30 (213)
T d1vmaa2 13 VIMVVGVNGTGKTTSCGK 30 (213)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
T ss_conf 999989999988999999
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=93.71 E-value=0.026 Score=30.53 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998479999589999973126
Q 000755 647 RVAVCGTVGSGKSSLLSCILGEV 669 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilGe~ 669 (1300)
.++++|++|+|||||++.+.|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999998999999996777
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=93.71 E-value=0.026 Score=30.62 Aligned_cols=22 Identities=45% Similarity=0.638 Sum_probs=16.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999847999958999997312
Q 000755 647 RVAVCGTVGSGKSSLLSCILGE 668 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilGe 668 (1300)
.++++|.+|+|||||++.+.|.
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999999999999999688
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=93.70 E-value=0.028 Score=30.34 Aligned_cols=35 Identities=29% Similarity=0.409 Sum_probs=27.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 8939999979998599999999517799952699989
Q 000755 1081 GGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDG 1117 (1300)
Q Consensus 1081 ~GekigIVGrTGsGKSTLl~~L~rl~~p~~G~I~Idg 1117 (1300)
+|..|.|+|++||||||+.+.|.+.... --+.+|+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg~--~~~~~~~ 37 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPGV--PKVHFHS 37 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSS--CEEEECT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCC--CEEEECH
T ss_conf 9859999889999889999999999599--9799068
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.69 E-value=0.023 Score=30.98 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=15.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999984799995899999731265
Q 000755 647 RVAVCGTVGSGKSSLLSCILGEVP 670 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilGe~~ 670 (1300)
+++|.|++|||||||.+.|.-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789887899999999999836
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.67 E-value=0.026 Score=30.59 Aligned_cols=44 Identities=20% Similarity=0.192 Sum_probs=25.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCC
Q ss_conf 999984799995899999731265886379974938998158868
Q 000755 647 RVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWI 691 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilGe~~~~~G~I~v~g~iayv~Q~pwi 691 (1300)
.++|.|++||||||+.+.|.-.+....... ..-.+..++++-|-
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~~~~~-~~~~~~vi~~D~yy 47 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQNEVDY-RQKQVVILSQDSFY 47 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGGSCG-GGCSEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCHHCCCC-CCCCEEEEECCCCC
T ss_conf 999989997879999999999964101345-78843999346532
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.65 E-value=0.015 Score=32.31 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=23.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 93999997999859999999951779
Q 000755 1082 GMKTGIVGRTGSGKSTLIQTLFRIVE 1107 (1300)
Q Consensus 1082 GekigIVGrTGsGKSTLl~~L~rl~~ 1107 (1300)
|..+.|+||+|||||||++.|..-.+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 74999989999999999999984589
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=93.58 E-value=0.16 Score=24.50 Aligned_cols=40 Identities=25% Similarity=0.278 Sum_probs=20.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEC
Q ss_conf 8939999979998599999999517799952699989646
Q 000755 1081 GGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINI 1120 (1300)
Q Consensus 1081 ~GekigIVGrTGsGKSTLl~~L~rl~~p~~G~I~Idg~di 1120 (1300)
.+..+.+||+||+||||.+-=|...+.-..-++.+=..|.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt 44 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDT 44 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 9779999899999889999999999997799079998136
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.54 E-value=0.022 Score=31.15 Aligned_cols=28 Identities=21% Similarity=0.197 Sum_probs=24.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 3999984799995899999731265886
Q 000755 646 MRVAVCGTVGSGKSSLLSCILGEVPKIS 673 (1300)
Q Consensus 646 ~~vaIvG~~GSGKSTLL~~ilGe~~~~~ 673 (1300)
..++|+|.+|||||||+..++.++....
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~g 29 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVREG 29 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCC
T ss_conf 0999980999989999999999998679
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=93.48 E-value=0.029 Score=30.14 Aligned_cols=27 Identities=33% Similarity=0.608 Sum_probs=20.6
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 389399998479999589999973126
Q 000755 643 FHGMRVAVCGTVGSGKSSLLSCILGEV 669 (1300)
Q Consensus 643 ~~G~~vaIvG~~GSGKSTLL~~ilGe~ 669 (1300)
|+|..++|+|++||||||+.+.|.-.+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 998889998289998899999999985
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=93.47 E-value=0.055 Score=28.04 Aligned_cols=42 Identities=24% Similarity=0.404 Sum_probs=33.9
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECC
Q ss_conf 873893999984799995899999731265886379974938998158
Q 000755 641 KVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQS 688 (1300)
Q Consensus 641 ~i~~G~~vaIvG~~GSGKSTLL~~ilGe~~~~~G~I~v~g~iayv~Q~ 688 (1300)
-++.|..+.+.|+.|||||+|...+.....+..| .++|+.-+
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~------~v~yiDtE 94 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGG------TCAFIDAE 94 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTC------CEEEEESS
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCC------EEEEEECC
T ss_conf 8667547898058765227999999999970799------89999887
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.45 E-value=0.16 Score=24.34 Aligned_cols=47 Identities=9% Similarity=0.045 Sum_probs=30.1
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHH-HHHHC--CCCEEEEEECCHHHH
Q ss_conf 159988998578769899999999999-99826--992799992790244
Q 000755 1207 LKKSKVLVLDEATASVDTATDNLIQQT-LRQHF--SDCTVITIAHRITSV 1253 (1300)
Q Consensus 1207 L~~~~ILiLDEaTa~lD~~Td~~Iq~~-i~~~f--~~~TvI~IaHrl~ti 1253 (1300)
..+..++++||.-.+-+++--..+-.. ++... ..+.+++.+|.....
T Consensus 118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~ 167 (234)
T d1wb9a2 118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT 167 (234)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHH
T ss_conf 54660885322235877456667898764543204544289852468776
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=93.43 E-value=0.012 Score=33.16 Aligned_cols=25 Identities=32% Similarity=0.574 Sum_probs=19.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9399999799985999999995177
Q 000755 1082 GMKTGIVGRTGSGKSTLIQTLFRIV 1106 (1300)
Q Consensus 1082 GekigIVGrTGsGKSTLl~~L~rl~ 1106 (1300)
.-+|+|+|++++|||||+++|++.-
T Consensus 16 ~~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 16 GIEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9789998899998999999985898
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=93.42 E-value=0.0096 Score=33.95 Aligned_cols=35 Identities=29% Similarity=0.351 Sum_probs=30.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 89399998479999589999973126588637997
Q 000755 644 HGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKL 678 (1300)
Q Consensus 644 ~G~~vaIvG~~GSGKSTLL~~ilGe~~~~~G~I~v 678 (1300)
+|+.++++|++|.|||||+++|+|+.....|.|.-
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~ 130 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISE 130 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCCC
T ss_conf 35649998778734878987515176764035553
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=93.40 E-value=0.17 Score=24.29 Aligned_cols=122 Identities=21% Similarity=0.316 Sum_probs=65.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHC
Q ss_conf 99984799995899999731265886379974938998158868888788998429999999999999982525788641
Q 000755 648 VAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEIL 727 (1300)
Q Consensus 648 vaIvG~~GSGKSTLL~~ilGe~~~~~G~I~v~g~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~l 727 (1300)
+.|.|++|||||-|++++.-++.... -.+.|++-. +. ..++...+..-...+
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~~~~~~------~~~~~~~~~---------~~--------~~~~~~~~~~~~~~~----- 90 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNEAKKRG------YRVIYSSAD---------DF--------AQAMVEHLKKGTINE----- 90 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHHTT------CCEEEEEHH---------HH--------HHHHHHHHHHTCHHH-----
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCC------CCEEEECHH---------HH--------HHHHHHHHHCCCHHH-----
T ss_conf 79988899839999999998744676------504884437---------87--------999999987166266-----
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC-CHHHHHHHHHHHHHHHC-CCCEEEEEECCCC-CC
Q ss_conf 589864236788878978999999999980599889981677788-99899999999997602-9957999905988-30
Q 000755 728 SFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAV-DAHTGSHLFKEVLLGLL-RSKTVIYVTHQVE-FL 804 (1300)
Q Consensus 728 p~Gd~T~IGe~G~~LSGGQkqRIaLARAly~~a~IllLDdp~Sal-D~~t~~~if~~~i~~~l-~~kTvIlvTH~l~-~l 804 (1300)
.+..+.++|++++||.=.-. +..++..+|. ++.... .++.+|+.+.... .+
T Consensus 91 -------------------------~~~~~~~~dll~iDDi~~i~~~~~~~~~lf~-lin~~~~~~~~iiits~~~p~~l 144 (213)
T d1l8qa2 91 -------------------------FRNMYKSVDLLLLDDVQFLSGKERTQIEFFH-IFNTLYLLEKQIILASDRHPQKL 144 (213)
T ss_dssp -------------------------HHHHHHTCSEEEEECGGGGTTCHHHHHHHHH-HHHHHHHTTCEEEEEESSCGGGC
T ss_pred -------------------------HHHHHHHCCCHHHHHHHHHCCCHHHHHHHHH-HHHHHHHCCCEEEEECCCCCHHC
T ss_conf -------------------------7898762130101126550586577889999-99987631663899548751001
Q ss_pred CC--CCEEEEEECCEEEEECC
Q ss_conf 23--98899993985989138
Q 000755 805 PA--ADLILVMKDGKITQAGK 823 (1300)
Q Consensus 805 ~~--aD~Ilvl~~G~I~~~G~ 823 (1300)
+. .|-.-.+..|-+.+-.+
T Consensus 145 ~~~~~dL~SRL~~g~~~~i~p 165 (213)
T d1l8qa2 145 DGVSDRLVSRFEGGILVEIEL 165 (213)
T ss_dssp TTSCHHHHHHHHTSEEEECCC
T ss_pred CCCCHHHHHHHHCCEEEEECC
T ss_conf 343267888861856899788
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=93.17 E-value=0.031 Score=30.00 Aligned_cols=22 Identities=36% Similarity=0.433 Sum_probs=12.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999847999958999997312
Q 000755 647 RVAVCGTVGSGKSSLLSCILGE 668 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilGe 668 (1300)
.++|+|+.|||||||.+.|...
T Consensus 9 ~I~i~G~~GsGKTTla~~La~~ 30 (192)
T d1lw7a2 9 TVAILGGESSGKSVLVNKLAAV 30 (192)
T ss_dssp EEEEECCTTSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999899999899999999998
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.15 E-value=0.041 Score=29.05 Aligned_cols=40 Identities=13% Similarity=0.213 Sum_probs=15.8
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 599889981677788998999999999976029957999905988
Q 000755 758 QDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVE 802 (1300)
Q Consensus 758 ~~a~IllLDdp~SalD~~t~~~if~~~i~~~l~~kTvIlvTH~l~ 802 (1300)
.++|++++|-.- ... +....+.+. +.. .++.+++|-+..+
T Consensus 134 ~~~d~~l~~~~~-~~~-~~d~~l~~~-l~~--~~k~~~~V~nK~D 173 (400)
T d1tq4a_ 134 YEYDFFIIISAT-RFK-KNDIDIAKA-ISM--MKKEFYFVRTKVD 173 (400)
T ss_dssp GGCSEEEEEESS-CCC-HHHHHHHHH-HHH--TTCEEEEEECCHH
T ss_pred HCCEEEEEECCC-CCC-HHHHHHHHH-HHH--CCCCEEEEEECCC
T ss_conf 226599996588-887-889999999-997--6998799970863
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=93.10 E-value=0.031 Score=29.93 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979998599999999517
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFRI 1105 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~rl 1105 (1300)
+|+|+|++|+|||||+++|+|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHCCC
T ss_conf 9999899998799999985298
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=92.99 E-value=0.19 Score=23.84 Aligned_cols=25 Identities=32% Similarity=0.498 Sum_probs=22.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999847999958999997312658
Q 000755 647 RVAVCGTVGSGKSSLLSCILGEVPK 671 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilGe~~~ 671 (1300)
-+.+.||.|+|||++.+++..++..
T Consensus 44 giLl~GppGtGKT~la~aia~~~~~ 68 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEARV 68 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 4887668988835999999987399
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=92.97 E-value=0.044 Score=28.78 Aligned_cols=28 Identities=25% Similarity=0.567 Sum_probs=24.7
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4893999997999859999999951779
Q 000755 1080 PGGMKTGIVGRTGSGKSTLIQTLFRIVE 1107 (1300)
Q Consensus 1080 ~~GekigIVGrTGsGKSTLl~~L~rl~~ 1107 (1300)
++|-+|.|.|+.||||||+.+.|..-+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9988899982899988999999999858
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=92.88 E-value=0.037 Score=29.35 Aligned_cols=20 Identities=20% Similarity=0.491 Sum_probs=12.9
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99984799995899999731
Q 000755 648 VAVCGTVGSGKSSLLSCILG 667 (1300)
Q Consensus 648 vaIvG~~GSGKSTLL~~ilG 667 (1300)
+||+|.+.+|||||+++|+|
T Consensus 8 IaiiG~~naGKSTL~n~L~~ 27 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTE 27 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHH
T ss_conf 99990778709999999997
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.88 E-value=0.088 Score=26.41 Aligned_cols=31 Identities=13% Similarity=0.179 Sum_probs=25.0
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8738939999847999958999997312658
Q 000755 641 KVFHGMRVAVCGTVGSGKSSLLSCILGEVPK 671 (1300)
Q Consensus 641 ~i~~G~~vaIvG~~GSGKSTLL~~ilGe~~~ 671 (1300)
-+++|+.+.|.|++|||||+|..-++.....
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~~~ 49 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVTCQL 49 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTS
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 9859979999958999999999999999988
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=92.85 E-value=0.054 Score=28.05 Aligned_cols=24 Identities=33% Similarity=0.367 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999984799995899999731265
Q 000755 647 RVAVCGTVGSGKSSLLSCILGEVP 670 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilGe~~ 670 (1300)
.++|+|+.|||||||++.++....
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899839999999999884
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=92.77 E-value=0.028 Score=30.29 Aligned_cols=28 Identities=18% Similarity=0.224 Sum_probs=21.2
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3893999984799995899999731265
Q 000755 643 FHGMRVAVCGTVGSGKSSLLSCILGEVP 670 (1300)
Q Consensus 643 ~~G~~vaIvG~~GSGKSTLL~~ilGe~~ 670 (1300)
++.-+++++|+.|+|||||++.+.+...
T Consensus 11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~ 38 (186)
T d1f6ba_ 11 KKTGKLVFLGLDNAGKTTLLHMLKDDRL 38 (186)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC--
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 7777899999999898999999967887
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=92.66 E-value=0.21 Score=23.51 Aligned_cols=35 Identities=29% Similarity=0.302 Sum_probs=25.7
Q ss_pred CCEECCEE-EEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 93001116-873893999984799995899999731
Q 000755 633 PTLRDINL-KVFHGMRVAVCGTVGSGKSSLLSCILG 667 (1300)
Q Consensus 633 ~~L~~inl-~i~~G~~vaIvG~~GSGKSTLL~~ilG 667 (1300)
+.|+++=- -+++|+.+.|.|++|+|||+|..-++.
T Consensus 13 ~~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~~ 48 (242)
T d1tf7a1 13 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLY 48 (242)
T ss_dssp TTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 779885568996983999994799999999999999
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=92.64 E-value=0.03 Score=30.11 Aligned_cols=68 Identities=21% Similarity=0.252 Sum_probs=39.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEECCCCCCCCCCHHHH--CCC-C---CCCC
Q ss_conf 999997999859999999951779995269998964688897777302188817887786547871--387-9---8899
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNN--LDP-L---EEYK 1157 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~rl~~p~~G~I~Idg~di~~i~l~~lR~~i~iIpQdp~lF~gTiR~N--Ldp-~---~~~s 1157 (1300)
.|||.|++||||||+.+.|..+..-..+. .++.+|++|.+..+...++. +.. + +.+.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~~-----------------~~v~~Is~D~F~~~~~~l~~~~~~~~~g~Pes~D 144 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPEH-----------------RRVELITTDGFLHPNQVLKERGLMKKKGFPESYD 144 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTTC-----------------CCEEEEEGGGGBCCHHHHHHHTCTTCTTSGGGBC
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCC-----------------CCEEEEEEEEEECCCHHHHHHCCCCCCCCHHHHH
T ss_conf 99996899998768999999997304689-----------------9659995215689845888836876688167631
Q ss_pred HHHHHHHHHHC
Q ss_conf 99999999983
Q 000755 1158 DEEIWEALDKC 1168 (1300)
Q Consensus 1158 d~ei~~aL~~~ 1168 (1300)
-+.+.+.|...
T Consensus 145 ~~~L~~~L~~l 155 (308)
T d1sq5a_ 145 MHRLVKFVSDL 155 (308)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.63 E-value=0.039 Score=29.17 Aligned_cols=26 Identities=35% Similarity=0.464 Sum_probs=22.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 39999979998599999999517799
Q 000755 1083 MKTGIVGRTGSGKSTLIQTLFRIVEP 1108 (1300)
Q Consensus 1083 ekigIVGrTGsGKSTLl~~L~rl~~p 1108 (1300)
=.|||.|++|||||||.+.|......
T Consensus 23 ~iIgI~G~~GSGKSTla~~L~~~l~~ 48 (198)
T d1rz3a_ 23 LVLGIDGLSRSGKTTLANQLSQTLRE 48 (198)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 89997898878999999999998363
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=92.62 E-value=0.041 Score=29.00 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799985999999995177
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFRIV 1106 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~rl~ 1106 (1300)
+|.++|+||+|||||+++|+|--
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=92.60 E-value=0.045 Score=28.73 Aligned_cols=27 Identities=19% Similarity=0.383 Sum_probs=19.1
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 389399998479999589999973126
Q 000755 643 FHGMRVAVCGTVGSGKSSLLSCILGEV 669 (1300)
Q Consensus 643 ~~G~~vaIvG~~GSGKSTLL~~ilGe~ 669 (1300)
++|..+.++|.+||||||+.++|.-.+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 997699988999999999999999998
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=92.54 E-value=0.049 Score=28.41 Aligned_cols=49 Identities=27% Similarity=0.453 Sum_probs=32.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC--------------CCCCEEEECCEECCCCCHHHHHCC
Q ss_conf 893999997999859999999951779--------------995269998964688897777302
Q 000755 1081 GGMKTGIVGRTGSGKSTLIQTLFRIVE--------------PTAGEIVIDGINISSIGLHDLRSR 1131 (1300)
Q Consensus 1081 ~GekigIVGrTGsGKSTLl~~L~rl~~--------------p~~G~I~Idg~di~~i~l~~lR~~ 1131 (1300)
.|..+-|+||+|+||+||.+.|+.-.+ |..|+ +||+|---++.......
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E--~~G~dY~Fvs~~~F~~~ 63 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGE--VHGEHYFFVNHDEFKEM 63 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCC--CCCCCCEEECHHHHHHH
T ss_conf 9809999999999999999999863986684278887636788655--43212334328999987
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=92.49 E-value=0.026 Score=30.53 Aligned_cols=27 Identities=26% Similarity=0.326 Sum_probs=23.7
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 648939999979998599999999517
Q 000755 1079 FPGGMKTGIVGRTGSGKSTLIQTLFRI 1105 (1300)
Q Consensus 1079 i~~GekigIVGrTGsGKSTLl~~L~rl 1105 (1300)
+++|..+-|.|++|+|||++..-+..-
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 869849999918999999999999999
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=92.47 E-value=0.046 Score=28.61 Aligned_cols=28 Identities=21% Similarity=0.331 Sum_probs=24.5
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4893999997999859999999951779
Q 000755 1080 PGGMKTGIVGRTGSGKSTLIQTLFRIVE 1107 (1300)
Q Consensus 1080 ~~GekigIVGrTGsGKSTLl~~L~rl~~ 1107 (1300)
+.|..|.++|.+||||||+..+|...+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9976999889999999999999999986
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.41 E-value=0.049 Score=28.39 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=12.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999859999999951
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFR 1104 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~r 1104 (1300)
.+-|+||||+||+||++.|.+
T Consensus 5 ~ivl~Gpsg~GK~tl~~~L~~ 25 (178)
T d1kgda_ 5 TLVLLGAHGVGRRHIKNTLIT 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
T ss_conf 199999899999999999997
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=92.27 E-value=0.23 Score=23.17 Aligned_cols=24 Identities=38% Similarity=0.441 Sum_probs=14.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399999799985999999995177
Q 000755 1083 MKTGIVGRTGSGKSTLIQTLFRIV 1106 (1300)
Q Consensus 1083 ekigIVGrTGsGKSTLl~~L~rl~ 1106 (1300)
..+.+||+||+||||.+-=|...+
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~ 33 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQF 33 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 799998999999899999999999
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=92.19 E-value=0.054 Score=28.10 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=12.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999847999958999997312
Q 000755 647 RVAVCGTVGSGKSSLLSCILGE 668 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilGe 668 (1300)
+++++|.+|+|||||++.+.+.
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998999999999679
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=92.13 E-value=0.059 Score=27.76 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=12.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399999799985999999995177
Q 000755 1083 MKTGIVGRTGSGKSTLIQTLFRIV 1106 (1300)
Q Consensus 1083 ekigIVGrTGsGKSTLl~~L~rl~ 1106 (1300)
..|.|.|++||||||+.+.|.+..
T Consensus 4 kiI~l~G~~GsGKsTva~~L~~~l 27 (178)
T d1qhxa_ 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 599998999999899999999972
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=92.09 E-value=0.07 Score=27.19 Aligned_cols=24 Identities=42% Similarity=0.516 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999997999859999999951779
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFRIVE 1107 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~rl~~ 1107 (1300)
.|+|+|+.|||||||++.|.+-..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899839999999999884
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.08 E-value=0.17 Score=24.13 Aligned_cols=21 Identities=52% Similarity=0.635 Sum_probs=17.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984799995899999731
Q 000755 647 RVAVCGTVGSGKSSLLSCILG 667 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilG 667 (1300)
+++++|..|+|||||++.+++
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899798999999970
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.99 E-value=0.058 Score=27.81 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999847999958999997312
Q 000755 647 RVAVCGTVGSGKSSLLSCILGE 668 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilGe 668 (1300)
.++++|++|+|||||++.+.|.
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998899999999679
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.91 E-value=0.054 Score=28.10 Aligned_cols=44 Identities=25% Similarity=0.397 Sum_probs=29.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEECCCCCC
Q ss_conf 9999979998599999999517799952699989646888977773021888178877
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDPTM 1141 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~rl~~p~~G~I~Idg~di~~i~l~~lR~~i~iIpQdp~l 1141 (1300)
.|||.|++||||||+.+.|...+..... + .-.....++++|.+.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~~~----~----------~~~~~~~vi~~D~yy 47 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQNEV----D----------YRQKQVVILSQDSFY 47 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGGS----C----------GGGCSEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCHHCC----C----------CCCCCEEEEECCCCC
T ss_conf 9999899978799999999999641013----4----------578843999346532
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=91.90 E-value=0.056 Score=27.94 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=18.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999984799995899999731265
Q 000755 646 MRVAVCGTVGSGKSSLLSCILGEVP 670 (1300)
Q Consensus 646 ~~vaIvG~~GSGKSTLL~~ilGe~~ 670 (1300)
.++.|+|++||||||+.+.|...+.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 0899989999998999999999809
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.82 E-value=0.063 Score=27.57 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=16.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999847999958999997312
Q 000755 647 RVAVCGTVGSGKSSLLSCILGE 668 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilGe 668 (1300)
+++++|+.|+|||||++.+.+.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999999999999589
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=91.76 E-value=0.043 Score=28.86 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=22.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399999799985999999995177
Q 000755 1083 MKTGIVGRTGSGKSTLIQTLFRIV 1106 (1300)
Q Consensus 1083 ekigIVGrTGsGKSTLl~~L~rl~ 1106 (1300)
.+|.|+|++|+|||||+++|...+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289998999998999999999984
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=91.69 E-value=0.013 Score=32.87 Aligned_cols=21 Identities=43% Similarity=0.684 Sum_probs=12.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999859999999951
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFR 1104 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~r 1104 (1300)
||+++|++|+|||||+++|.+
T Consensus 2 kI~liG~~n~GKSSLin~l~g 22 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLN 22 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 899999999999999999958
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=91.63 E-value=0.068 Score=27.31 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999847999958999997312
Q 000755 647 RVAVCGTVGSGKSSLLSCILGE 668 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilGe 668 (1300)
+++++|+.|+|||||++.+.+.
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998989999999659
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=91.59 E-value=0.077 Score=26.86 Aligned_cols=26 Identities=23% Similarity=0.529 Sum_probs=23.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 93999984799995899999731265
Q 000755 645 GMRVAVCGTVGSGKSSLLSCILGEVP 670 (1300)
Q Consensus 645 G~~vaIvG~~GSGKSTLL~~ilGe~~ 670 (1300)
...+.++|++||||||+.+.|...+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=91.57 E-value=0.067 Score=27.33 Aligned_cols=22 Identities=45% Similarity=0.590 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979998599999999517
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFRI 1105 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~rl 1105 (1300)
+|+++|++|+|||||++.|++-
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999899999999677
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.56 E-value=0.12 Score=25.34 Aligned_cols=49 Identities=18% Similarity=0.089 Sum_probs=29.6
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCC
Q ss_conf 8738939999847999958999997312658863799749389981588
Q 000755 641 KVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSP 689 (1300)
Q Consensus 641 ~i~~G~~vaIvG~~GSGKSTLL~~ilGe~~~~~G~I~v~g~iayv~Q~p 689 (1300)
-+++|+.+.|.|++|||||+|..-++-........-..++...|+..+.
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~~~~~~~~~~~~~~~~~~~i~~~~ 78 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 78 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHTTTTTSCTTTTCCSCEEEEEESSS
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECC
T ss_conf 9869969999838999889999999998631243126896399994023
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.54 E-value=0.12 Score=25.24 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=11.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799985999999995177
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFRIV 1106 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~rl~ 1106 (1300)
.|.|+|+.||||||+...|..-+
T Consensus 10 iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 10 VIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998999999899999999985
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=91.46 E-value=0.072 Score=27.09 Aligned_cols=22 Identities=41% Similarity=0.667 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979998599999999517
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFRI 1105 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~rl 1105 (1300)
+|+++|++|+|||||++.|++-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999999999999999688
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.42 E-value=0.06 Score=27.70 Aligned_cols=23 Identities=39% Similarity=0.788 Sum_probs=12.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99984799995899999731265
Q 000755 648 VAVCGTVGSGKSSLLSCILGEVP 670 (1300)
Q Consensus 648 vaIvG~~GSGKSTLL~~ilGe~~ 670 (1300)
++|+||+||||+||.+.++.+.+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99989999998999999997488
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=91.39 E-value=0.068 Score=27.31 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999847999958999997312658
Q 000755 647 RVAVCGTVGSGKSSLLSCILGEVPK 671 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilGe~~~ 671 (1300)
.+.++||+|+||||++++++.++..
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l~~ 71 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALARELFG 71 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 6999789997487999999999873
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=91.38 E-value=0.075 Score=26.95 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=20.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399998479999589999973126
Q 000755 646 MRVAVCGTVGSGKSSLLSCILGEV 669 (1300)
Q Consensus 646 ~~vaIvG~~GSGKSTLL~~ilGe~ 669 (1300)
+++.++|++||||||+.+.|..+.
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~ 26 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKN 26 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 799998999999999999999957
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=91.31 E-value=0.069 Score=27.24 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=15.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 39999847999958999997312658
Q 000755 646 MRVAVCGTVGSGKSSLLSCILGEVPK 671 (1300)
Q Consensus 646 ~~vaIvG~~GSGKSTLL~~ilGe~~~ 671 (1300)
..++|.|+.||||||+.+.|.-.+..
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~ 27 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRK 27 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 88999899998989999999999987
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=91.20 E-value=0.088 Score=26.43 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=14.2
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 38939999847999958999997312
Q 000755 643 FHGMRVAVCGTVGSGKSSLLSCILGE 668 (1300)
Q Consensus 643 ~~G~~vaIvG~~GSGKSTLL~~ilGe 668 (1300)
|+|-.++++|+.||||||..+.|.-.
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~ 26 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKN 26 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99638999899999889999999998
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=91.19 E-value=0.078 Score=26.82 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=23.6
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 489399999799985999999995177
Q 000755 1080 PGGMKTGIVGRTGSGKSTLIQTLFRIV 1106 (1300)
Q Consensus 1080 ~~GekigIVGrTGsGKSTLl~~L~rl~ 1106 (1300)
+.+..+.|+|++||||||+.+.|..-+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=91.13 E-value=0.063 Score=27.54 Aligned_cols=30 Identities=17% Similarity=0.137 Sum_probs=24.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 399999799985999999995177999526
Q 000755 1083 MKTGIVGRTGSGKSTLIQTLFRIVEPTAGE 1112 (1300)
Q Consensus 1083 ekigIVGrTGsGKSTLl~~L~rl~~p~~G~ 1112 (1300)
..|.|.|+.||||||+.+.|...+.....+
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~ 31 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVN 31 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 889998999989899999999999876998
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=91.10 E-value=0.038 Score=29.25 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=16.2
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 389399998479999589999973126
Q 000755 643 FHGMRVAVCGTVGSGKSSLLSCILGEV 669 (1300)
Q Consensus 643 ~~G~~vaIvG~~GSGKSTLL~~ilGe~ 669 (1300)
++|..+.++|.+||||||+.+.+.-.+
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l 48 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQL 48 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 998699998999999899999999887
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=91.09 E-value=0.3 Score=22.26 Aligned_cols=25 Identities=16% Similarity=0.185 Sum_probs=12.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9399998479999589999973126
Q 000755 645 GMRVAVCGTVGSGKSSLLSCILGEV 669 (1300)
Q Consensus 645 G~~vaIvG~~GSGKSTLL~~ilGe~ 669 (1300)
...++++||+|+||||.+.-|.-.+
T Consensus 12 p~vi~lvGptGvGKTTTiAKLA~~~ 36 (211)
T d1j8yf2 12 PYVIMLVGVQGTGKATTAGKLAYFY 36 (211)
T ss_dssp SEEEEEECSCCC----HHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9899998999999899999999999
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=91.01 E-value=0.11 Score=25.81 Aligned_cols=73 Identities=21% Similarity=0.293 Sum_probs=40.1
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEECCCCCCCCCCHHHHCCCCCCCCHH
Q ss_conf 48939999979998599999999517799952699989646888977773021888178877865478713879889999
Q 000755 1080 PGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEEYKDE 1159 (1300)
Q Consensus 1080 ~~GekigIVGrTGsGKSTLl~~L~rl~~p~~G~I~Idg~di~~i~l~~lR~~i~iIpQdp~lF~gTiR~NLdp~~~~sd~ 1159 (1300)
|+|-+|-|+|+.||||||+.+.|..-+ |-..|+--| -+|.. .++..-..-.++..++-.....++
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~----g~~~i~~gd-------llr~~----~~~~~~~g~~~~~~~~~g~~~~~~ 65 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF----CVCHLATGD-------MLRAM----VASGSELGKKLKATMDAGKLVSDE 65 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH----TCEEEEHHH-------HHHHH----HHHTCHHHHHHHHHHHTTCCCCHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH----CCEEEEHHH-------HHHHH----HHCCCCCCCHHHHHHCCCCCCCCC
T ss_conf 996389998999998899999999986----985775778-------89988----742674330233132167743330
Q ss_pred HHHHHHHH
Q ss_conf 99999998
Q 000755 1160 EIWEALDK 1167 (1300)
Q Consensus 1160 ei~~aL~~ 1167 (1300)
.+...+..
T Consensus 66 ~v~~~~~~ 73 (190)
T d1ak2a1 66 MVLELIEK 73 (190)
T ss_dssp HHHHHHHH
T ss_pred EEEEEEHH
T ss_conf 24531113
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=90.90 E-value=0.084 Score=26.57 Aligned_cols=28 Identities=25% Similarity=0.338 Sum_probs=22.8
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3893999984799995899999731265
Q 000755 643 FHGMRVAVCGTVGSGKSSLLSCILGEVP 670 (1300)
Q Consensus 643 ~~G~~vaIvG~~GSGKSTLL~~ilGe~~ 670 (1300)
++.-.++|-|..||||||+++.|...+.
T Consensus 7 ~kp~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 7 TQPFTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 9861999889999888999999998707
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=90.90 E-value=0.21 Score=23.55 Aligned_cols=24 Identities=50% Similarity=0.740 Sum_probs=16.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 939999979998599999999517
Q 000755 1082 GMKTGIVGRTGSGKSTLIQTLFRI 1105 (1300)
Q Consensus 1082 GekigIVGrTGsGKSTLl~~L~rl 1105 (1300)
+-|+||||-..+|||||+++|.+-
T Consensus 2 ~~~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 2 GFKCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 834888899999889999999779
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=90.86 E-value=0.073 Score=27.03 Aligned_cols=22 Identities=41% Similarity=0.419 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979998599999999517
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFRI 1105 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~rl 1105 (1300)
.|+|||++|+|||||+++|++-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998899999999689
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=90.75 E-value=0.075 Score=26.98 Aligned_cols=88 Identities=15% Similarity=0.286 Sum_probs=44.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCC-CC---HHHHHCCCEEECCCCCCCCC--CHHHHCCCCCC
Q ss_conf 93999997999859999999951779995269998964688-89---77773021888178877865--47871387988
Q 000755 1082 GMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISS-IG---LHDLRSRLSIIPQDPTMFEG--TVRNNLDPLEE 1155 (1300)
Q Consensus 1082 GekigIVGrTGsGKSTLl~~L~rl~~p~~G~I~Idg~di~~-i~---l~~lR~~i~iIpQdp~lF~g--TiR~NLdp~~~ 1155 (1300)
.-+|||+|+.|||||||+..|.+.+....-++-+=.+|.++ .+ +-.=|.|+...+.+|..|-. .-|.++.....
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~~~~~ir~~~~~g~lgg~~~ 133 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGASQ 133 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 32897438999989999999999997569833220377761000651554136788740565410156555344442033
Q ss_pred CCHHHHHHHHHHCCC
Q ss_conf 999999999998399
Q 000755 1156 YKDEEIWEALDKCQL 1170 (1300)
Q Consensus 1156 ~sd~ei~~aL~~~~L 1170 (1300)
.-.+.-.+++.++.
T Consensus 134 -~~~~~~~~~~~~g~ 147 (327)
T d2p67a1 134 -RARELMLLCEAAGY 147 (327)
T ss_dssp -HHHHHHHHHHHTTC
T ss_pred -HHHHHHHHHHHCCC
T ss_conf -20578999886499
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=90.65 E-value=0.087 Score=26.45 Aligned_cols=151 Identities=17% Similarity=0.111 Sum_probs=66.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC---CEEEEEECCCCCCCCCHHH------HHHCCCCCCHHHHHHHHHH
Q ss_conf 999984799995899999731265886379974---9389981588688887889------9842999999999999998
Q 000755 647 RVAVCGTVGSGKSSLLSCILGEVPKISGTLKLC---GTKAYVAQSPWIQSGNIED------NILFGKPMDREKYDRVLEA 717 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilGe~~~~~G~I~v~---g~iayv~Q~pwi~~gTIre------NIlfG~~~d~~~y~~vl~a 717 (1300)
.++|+|...||||||+++|+|+--...|..... -.+-|-. ++....+.-.. ..-.....+.+++..-+..
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~~lP~~~~~~T~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 104 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTH-LPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIR 104 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEE-CCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEC-CCCCCCCCCHHHHHHHHHCCCCEECCHHHHHHHHHH
T ss_conf 5999818989799999999689978878975406888999945-776667653065667762688622378999999999
Q ss_pred HC---------CHHHHHHC-----CCCCCCCCCCCCCCCCH-------HHHHHHHHHHHHCCCCC--EEEEECCCCCCCH
Q ss_conf 25---------25788641-----58986423678887897-------89999999999805998--8998167778899
Q 000755 718 CS---------LKKDLEIL-----SFGDQTVIGERGINLSG-------GQKQRIQIARALYQDAD--IYLFDDPFSAVDA 774 (1300)
Q Consensus 718 c~---------L~~di~~l-----p~Gd~T~IGe~G~~LSG-------GQkqRIaLARAly~~a~--IllLDdp~SalD~ 774 (1300)
.. ...+.... -....+.|.--|.+-+. .+.+.-.+++...++++ |+...+.......
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~ 184 (306)
T d1jwyb_ 105 DTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLAN 184 (306)
T ss_dssp HCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTT
T ss_pred HHHHHCCCCCCCCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf 99874277776566506998247898880686588864436688403589999999999982777516876325631003
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 89999999999760299579999059
Q 000755 775 HTGSHLFKEVLLGLLRSKTVIYVTHQ 800 (1300)
Q Consensus 775 ~t~~~if~~~i~~~l~~kTvIlvTH~ 800 (1300)
.....+.++ +.. ...+|++++|+-
T Consensus 185 ~~~~~~~~~-~~~-~~~r~i~Vitk~ 208 (306)
T d1jwyb_ 185 SDALQLAKE-VDP-EGKRTIGVITKL 208 (306)
T ss_dssp CSHHHHHHH-HCS-SCSSEEEEEECT
T ss_pred CHHHHHHHH-HCC-CCCEEEEEEECC
T ss_conf 499999997-386-788589998204
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.61 E-value=0.091 Score=26.31 Aligned_cols=22 Identities=32% Similarity=0.357 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979998599999999517
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFRI 1105 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~rl 1105 (1300)
.|.|+|++|+|||||++.|.+-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998899999999679
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.60 E-value=0.09 Score=26.35 Aligned_cols=25 Identities=12% Similarity=0.161 Sum_probs=20.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999984799995899999731265
Q 000755 646 MRVAVCGTVGSGKSSLLSCILGEVP 670 (1300)
Q Consensus 646 ~~vaIvG~~GSGKSTLL~~ilGe~~ 670 (1300)
.+++++|.+||||||+.+.|...+.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8999989999999999999999997
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.57 E-value=0.14 Score=24.77 Aligned_cols=49 Identities=10% Similarity=0.026 Sum_probs=31.1
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCC
Q ss_conf 8738939999847999958999997312658863799749389981588
Q 000755 641 KVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSP 689 (1300)
Q Consensus 641 ~i~~G~~vaIvG~~GSGKSTLL~~ilGe~~~~~G~I~v~g~iayv~Q~p 689 (1300)
-+++|+.+.|.|++|||||+|...++.........-.....+.|.....
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 81 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHH
T ss_conf 9768979999889988788999999999974443166662488740177
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=90.55 E-value=0.33 Score=21.91 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999847999958999997312658
Q 000755 647 RVAVCGTVGSGKSSLLSCILGEVPK 671 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilGe~~~ 671 (1300)
.+.+.||.|+||+|+..++..++..
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~~~l~~ 60 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLAKGLNC 60 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 5988889987589999999998468
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=90.54 E-value=0.081 Score=26.70 Aligned_cols=20 Identities=30% Similarity=0.461 Sum_probs=10.0
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99984799995899999731
Q 000755 648 VAVCGTVGSGKSSLLSCILG 667 (1300)
Q Consensus 648 vaIvG~~GSGKSTLL~~ilG 667 (1300)
++|+|++||||||+.+.|.-
T Consensus 7 I~i~G~pGsGKTTia~~La~ 26 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELAS 26 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 98989999998999999999
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.49 E-value=0.11 Score=25.71 Aligned_cols=27 Identities=15% Similarity=0.399 Sum_probs=23.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 939999847999958999997312658
Q 000755 645 GMRVAVCGTVGSGKSSLLSCILGEVPK 671 (1300)
Q Consensus 645 G~~vaIvG~~GSGKSTLL~~ilGe~~~ 671 (1300)
...++++||+|+||+||.+.++.+.+-
T Consensus 3 ~k~ivl~Gpsg~GK~tl~~~L~~~~~~ 29 (178)
T d1kgda_ 3 RKTLVLLGAHGVGRRHIKNTLITKHPD 29 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 771999998999999999999970976
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.49 E-value=0.34 Score=21.87 Aligned_cols=109 Identities=18% Similarity=0.226 Sum_probs=62.2
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCH
Q ss_conf 73893999984799995899999731265886379974938998158868888788998429999999999999982525
Q 000755 642 VFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLK 721 (1300)
Q Consensus 642 i~~G~~vaIvG~~GSGKSTLL~~ilGe~~~~~G~I~v~g~iayv~Q~pwi~~gTIreNIlfG~~~d~~~y~~vl~ac~L~ 721 (1300)
+++..-+.+.||.|+|||+|.+++.+++... .-++. -
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~~~~---------~~~~~----------------------------------~ 74 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANECQAN---------FISIK----------------------------------G 74 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHTTCE---------EEEEC----------------------------------H
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHCCC---------EEEEE----------------------------------H
T ss_conf 9988757887899876304778878771894---------79988----------------------------------7
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHH---------HHHHHHHHHHH---HHC
Q ss_conf 788641589864236788878978999999999980599889981677788998---------99999999997---602
Q 000755 722 KDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAH---------TGSHLFKEVLL---GLL 789 (1300)
Q Consensus 722 ~di~~lp~Gd~T~IGe~G~~LSGGQkqRIaLARAly~~a~IllLDdp~SalD~~---------t~~~if~~~i~---~~l 789 (1300)
.++.. +..| ...++-|-.+.+|-...|-|+++||.=+..... ....+....+. +..
T Consensus 75 ~~l~~------~~~~------~~~~~l~~~f~~A~~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 142 (265)
T d1r7ra3 75 PELLT------MWFG------ESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 142 (265)
T ss_dssp HHHHT------SCTT------THHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC---
T ss_pred HHHHH------CCCC------CHHHHHHHHHHHHHHCCCCCEEHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 99525------3165------15899999999998639843568754632455787678873799999999999962867
Q ss_pred C--CCEEEEEECCCCCCC
Q ss_conf 9--957999905988302
Q 000755 790 R--SKTVIYVTHQVEFLP 805 (1300)
Q Consensus 790 ~--~kTvIlvTH~l~~l~ 805 (1300)
. +.-+|..||+++.++
T Consensus 143 ~~~~v~vi~ttn~~~~ld 160 (265)
T d1r7ra3 143 TKKNVFIIGATNRPDIID 160 (265)
T ss_dssp ---CCEEEECCBSCTTTS
T ss_pred CCCCEEEEEECCCCHHCC
T ss_conf 779989999179922279
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.44 E-value=0.1 Score=25.99 Aligned_cols=22 Identities=45% Similarity=0.665 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999799985999999995177
Q 000755 1085 TGIVGRTGSGKSTLIQTLFRIV 1106 (1300)
Q Consensus 1085 igIVGrTGsGKSTLl~~L~rl~ 1106 (1300)
|.|+||+||||+||++.|+.-.
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9998999999899999999748
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=90.32 E-value=0.1 Score=25.93 Aligned_cols=23 Identities=39% Similarity=0.588 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799985999999995177
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFRIV 1106 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~rl~ 1106 (1300)
.|||+|++.+|||||+++|.+..
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEEECCCCCHHHHHHHHHHHC
T ss_conf 99999077870999999999743
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=90.32 E-value=0.1 Score=25.87 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=16.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999847999958999997312
Q 000755 647 RVAVCGTVGSGKSSLLSCILGE 668 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilGe 668 (1300)
.+|++|...+|||||++++.|-
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred CEEEECCCCCCHHHHHHHHHCC
T ss_conf 1768899999899999999788
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=90.29 E-value=0.08 Score=26.75 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=20.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399999799985999999995177
Q 000755 1083 MKTGIVGRTGSGKSTLIQTLFRIV 1106 (1300)
Q Consensus 1083 ekigIVGrTGsGKSTLl~~L~rl~ 1106 (1300)
-+|.|+|+.||||||+.+.|..-+
T Consensus 5 ~~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 5 PNILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 979898999999899999999997
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=90.22 E-value=0.15 Score=24.60 Aligned_cols=26 Identities=38% Similarity=0.470 Sum_probs=23.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 39999847999958999997312658
Q 000755 646 MRVAVCGTVGSGKSSLLSCILGEVPK 671 (1300)
Q Consensus 646 ~~vaIvG~~GSGKSTLL~~ilGe~~~ 671 (1300)
..+.+.||.|||||||.++|.+++..
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~~ 58 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQG 58 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 79998897998899999999998651
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=90.22 E-value=0.14 Score=24.94 Aligned_cols=24 Identities=42% Similarity=0.672 Sum_probs=14.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 939999979998599999999517
Q 000755 1082 GMKTGIVGRTGSGKSTLIQTLFRI 1105 (1300)
Q Consensus 1082 GekigIVGrTGsGKSTLl~~L~rl 1105 (1300)
+-|+||||...+|||||+++|.+-
T Consensus 10 ~~kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 10 NLKTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 737999789999899999999778
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=90.16 E-value=0.11 Score=25.59 Aligned_cols=23 Identities=43% Similarity=0.613 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998479999589999973126
Q 000755 647 RVAVCGTVGSGKSSLLSCILGEV 669 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilGe~ 669 (1300)
.+||+|.+.+|||||+++|++.-
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~~ 29 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGSA 29 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHC
T ss_conf 79999699854999999998236
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.13 E-value=0.11 Score=25.79 Aligned_cols=23 Identities=39% Similarity=0.598 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998479999589999973126
Q 000755 647 RVAVCGTVGSGKSSLLSCILGEV 669 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilGe~ 669 (1300)
.++|+|...||||||+++|+|.=
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=90.12 E-value=0.097 Score=26.11 Aligned_cols=32 Identities=31% Similarity=0.367 Sum_probs=24.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 39999979998599999999517799952699989
Q 000755 1083 MKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDG 1117 (1300)
Q Consensus 1083 ekigIVGrTGsGKSTLl~~L~rl~~p~~G~I~Idg 1117 (1300)
..|.|+|++||||||+.+.|.+-+. +...++|
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~ 34 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD---NSAYIEG 34 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS---SEEEEEH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC---CCEEEEH
T ss_conf 0899989999998999999999809---9889830
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=90.12 E-value=0.075 Score=26.95 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998479999589999973126
Q 000755 647 RVAVCGTVGSGKSSLLSCILGEV 669 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilGe~ 669 (1300)
-+||+|++++|||||+++|.|.-
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~~ 25 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSAK 25 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69998999987999999996899
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.05 E-value=0.063 Score=27.55 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=17.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89399998479999589999973126
Q 000755 644 HGMRVAVCGTVGSGKSSLLSCILGEV 669 (1300)
Q Consensus 644 ~G~~vaIvG~~GSGKSTLL~~ilGe~ 669 (1300)
+|..+.++|++||||||+.+.|.-.+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99699988999999999999999999
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=90.01 E-value=0.093 Score=26.25 Aligned_cols=26 Identities=27% Similarity=0.225 Sum_probs=22.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89399999799985999999995177
Q 000755 1081 GGMKTGIVGRTGSGKSTLIQTLFRIV 1106 (1300)
Q Consensus 1081 ~GekigIVGrTGsGKSTLl~~L~rl~ 1106 (1300)
..-||.+||++|+|||||++.|.+-.
T Consensus 12 k~~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 12 KTGKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 77789999999989899999996788
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=89.96 E-value=0.1 Score=25.93 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979998599999999517
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFRI 1105 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~rl 1105 (1300)
||.++|+.|+|||||++.|.+-
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998989999999659
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=89.95 E-value=0.11 Score=25.69 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=20.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999979998599999999517
Q 000755 1083 MKTGIVGRTGSGKSTLIQTLFRI 1105 (1300)
Q Consensus 1083 ekigIVGrTGsGKSTLl~~L~rl 1105 (1300)
=||.|||++|+|||||++.+.+-
T Consensus 6 ~kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 6 MRILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHCC
T ss_conf 29999999998999999999679
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=89.94 E-value=0.12 Score=25.36 Aligned_cols=20 Identities=30% Similarity=0.562 Sum_probs=17.0
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998479999589999973
Q 000755 647 RVAVCGTVGSGKSSLLSCIL 666 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~il 666 (1300)
.++|+|..||||||+.+.+-
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99988888788999999999
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=89.90 E-value=0.12 Score=25.26 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999984799995899999731265
Q 000755 647 RVAVCGTVGSGKSSLLSCILGEVP 670 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilGe~~ 670 (1300)
+++++|+.|+|||||++.+.++..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~~ 27 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGEDV 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 999999999899999999808998
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.86 E-value=0.085 Score=26.53 Aligned_cols=21 Identities=43% Similarity=0.714 Sum_probs=10.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999847999958999997312
Q 000755 648 VAVCGTVGSGKSSLLSCILGE 668 (1300)
Q Consensus 648 vaIvG~~GSGKSTLL~~ilGe 668 (1300)
++|+||+||||+||.+.++.+
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999999999999999999974
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=89.85 E-value=0.12 Score=25.49 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=19.0
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 38939999847999958999997312
Q 000755 643 FHGMRVAVCGTVGSGKSSLLSCILGE 668 (1300)
Q Consensus 643 ~~G~~vaIvG~~GSGKSTLL~~ilGe 668 (1300)
++.-+++++|..|||||||++.+.+.
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98579999999998989999999668
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=89.83 E-value=0.0059 Score=35.60 Aligned_cols=32 Identities=16% Similarity=0.233 Sum_probs=25.4
Q ss_pred EECCEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 001116873893999984799995899999731
Q 000755 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILG 667 (1300)
Q Consensus 635 L~~inl~i~~G~~vaIvG~~GSGKSTLL~~ilG 667 (1300)
+++..+.+.+| +++|+|++||||||++.+|.-
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~ 46 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVT 46 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHH
T ss_pred EEEEEEECCCC-EEEEECCCCCCHHHHHHHHHH
T ss_conf 70279974998-089988999987999999999
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=89.81 E-value=0.38 Score=21.47 Aligned_cols=24 Identities=33% Similarity=0.220 Sum_probs=14.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399999799985999999995177
Q 000755 1083 MKTGIVGRTGSGKSTLIQTLFRIV 1106 (1300)
Q Consensus 1083 ekigIVGrTGsGKSTLl~~L~rl~ 1106 (1300)
..+.+||+||+||||.+-=|...+
T Consensus 11 ~vi~lvGp~GvGKTTTiaKLA~~~ 34 (207)
T d1ls1a2 11 NLWFLVGLQGSGKTTTAAKLALYY 34 (207)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 689998999998899999999999
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=89.71 E-value=0.25 Score=22.87 Aligned_cols=31 Identities=29% Similarity=0.430 Sum_probs=14.7
Q ss_pred EEEEEEEEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 13115996489399999799985999999995
Q 000755 1072 LRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLF 1103 (1300)
Q Consensus 1072 L~~is~~i~~GekigIVGrTGsGKSTLl~~L~ 1103 (1300)
+++-.+.+ .|.-+.|.|++|+||||+...|.
T Consensus 6 ~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~ 36 (177)
T d1knxa2 6 IHGVLLEV-FGVGVLLTGRSGIGKSECALDLI 36 (177)
T ss_dssp EEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred EEEEEEEE-CCEEEEEECCCCCCHHHHHHHHH
T ss_conf 78999999-99999998189999899999999
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.65 E-value=0.13 Score=25.03 Aligned_cols=29 Identities=17% Similarity=0.183 Sum_probs=24.1
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 38939999847999958999997312658
Q 000755 643 FHGMRVAVCGTVGSGKSSLLSCILGEVPK 671 (1300)
Q Consensus 643 ~~G~~vaIvG~~GSGKSTLL~~ilGe~~~ 671 (1300)
++|.+++|.|+-||||||+.+.|...+..
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~ 29 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALCA 29 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 98059999899888999999999999987
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.64 E-value=0.19 Score=23.74 Aligned_cols=29 Identities=24% Similarity=0.310 Sum_probs=24.9
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 96489399999799985999999995177
Q 000755 1078 TFPGGMKTGIVGRTGSGKSTLIQTLFRIV 1106 (1300)
Q Consensus 1078 ~i~~GekigIVGrTGsGKSTLl~~L~rl~ 1106 (1300)
-+++|+.+-|.|++|+|||||..-+..-.
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 98599799999589999999999999999
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=89.64 E-value=0.12 Score=25.42 Aligned_cols=21 Identities=29% Similarity=0.629 Sum_probs=15.3
Q ss_pred CEEEEECCCCCCHHHHHHHHH
Q ss_conf 399998479999589999973
Q 000755 646 MRVAVCGTVGSGKSSLLSCIL 666 (1300)
Q Consensus 646 ~~vaIvG~~GSGKSTLL~~il 666 (1300)
..++|+|.+||||||+.+.+-
T Consensus 4 ~IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 4 IIIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 899998988778999999999
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=89.64 E-value=0.17 Score=24.13 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=20.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999979998599999999517
Q 000755 1083 MKTGIVGRTGSGKSTLIQTLFRI 1105 (1300)
Q Consensus 1083 ekigIVGrTGsGKSTLl~~L~rl 1105 (1300)
-||.++|+.|+|||||++.|.+-
T Consensus 3 ~ki~ivG~~~~GKTsLi~~l~~~ 25 (165)
T d1ksha_ 3 LRLLMLGLDNAGKTTILKKFNGE 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHCCC
T ss_conf 79999999998999999998089
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=89.61 E-value=0.0044 Score=36.60 Aligned_cols=34 Identities=24% Similarity=0.238 Sum_probs=28.0
Q ss_pred CEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 11311599648939999979998599999999517
Q 000755 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRI 1105 (1300)
Q Consensus 1071 vL~~is~~i~~GekigIVGrTGsGKSTLl~~L~rl 1105 (1300)
.+++.++.+.+| .+.|+|+|||||||++.||.-.
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~ 47 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTA 47 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHH
T ss_pred CEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHH
T ss_conf 870279974998-0899889999879999999999
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.59 E-value=0.055 Score=28.01 Aligned_cols=27 Identities=26% Similarity=0.375 Sum_probs=23.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 893999997999859999999951779
Q 000755 1081 GGMKTGIVGRTGSGKSTLIQTLFRIVE 1107 (1300)
Q Consensus 1081 ~GekigIVGrTGsGKSTLl~~L~rl~~ 1107 (1300)
.|..|-++|.+||||||+.+.|.+...
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 996999889999999999999999997
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=89.49 E-value=0.14 Score=24.91 Aligned_cols=24 Identities=33% Similarity=0.374 Sum_probs=14.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399998479999589999973126
Q 000755 646 MRVAVCGTVGSGKSSLLSCILGEV 669 (1300)
Q Consensus 646 ~~vaIvG~~GSGKSTLL~~ilGe~ 669 (1300)
..++|+|+.||||||+.+.|.-.+
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 489998999998899999999997
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.46 E-value=0.13 Score=25.01 Aligned_cols=21 Identities=43% Similarity=0.732 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999979998599999999517
Q 000755 1085 TGIVGRTGSGKSTLIQTLFRI 1105 (1300)
Q Consensus 1085 igIVGrTGsGKSTLl~~L~rl 1105 (1300)
|.|+||+||||+||++.|...
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999999999999999999974
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.46 E-value=0.091 Score=26.32 Aligned_cols=42 Identities=21% Similarity=0.207 Sum_probs=26.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCC
Q ss_conf 999984799995899999731265886379974938998158868
Q 000755 647 RVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWI 691 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilGe~~~~~G~I~v~g~iayv~Q~pwi 691 (1300)
+++|.|+.|||||||...|.-.+....|. .-.++.++++-+-
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L~~~~~~---~~~v~~iS~DdfY 70 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHLMEKYGG---EKSIGYASIDDFY 70 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHGG---GSCEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHCC---CCCEEEECCCCCC
T ss_conf 99837998788999999999999987277---8606763567777
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.39 E-value=0.36 Score=21.68 Aligned_cols=23 Identities=43% Similarity=0.599 Sum_probs=19.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999847999958999997312
Q 000755 646 MRVAVCGTVGSGKSSLLSCILGE 668 (1300)
Q Consensus 646 ~~vaIvG~~GSGKSTLL~~ilGe 668 (1300)
=+++++|..|+|||||++.+++.
T Consensus 6 ~ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 6 LRLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 79999998997899999999719
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=89.24 E-value=0.076 Score=26.91 Aligned_cols=27 Identities=26% Similarity=0.484 Sum_probs=22.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 893999984799995899999731265
Q 000755 644 HGMRVAVCGTVGSGKSSLLSCILGEVP 670 (1300)
Q Consensus 644 ~G~~vaIvG~~GSGKSTLL~~ilGe~~ 670 (1300)
+.-.++|.|+.|+|||||+..+...+.
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~~~~ 76 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGSLLT 76 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 815986117998889999999999876
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.20 E-value=0.11 Score=25.67 Aligned_cols=27 Identities=15% Similarity=0.335 Sum_probs=18.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 893999984799995899999731265
Q 000755 644 HGMRVAVCGTVGSGKSSLLSCILGEVP 670 (1300)
Q Consensus 644 ~G~~vaIvG~~GSGKSTLL~~ilGe~~ 670 (1300)
++.+++|-|+.||||||+++.|...+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998899987888779999999999973
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=89.15 E-value=0.15 Score=24.71 Aligned_cols=22 Identities=41% Similarity=0.668 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999847999958999997312
Q 000755 647 RVAVCGTVGSGKSSLLSCILGE 668 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilGe 668 (1300)
.++++|.+|+|||||++++.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=89.08 E-value=0.2 Score=23.58 Aligned_cols=53 Identities=11% Similarity=0.174 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHCCCCC--EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 69999999998715998--8998578769899999999999998269927999927
Q 000755 1195 GQRQLVCLGRVLLKKSK--VLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAH 1248 (1300)
Q Consensus 1195 GQrQll~LARaLL~~~~--ILiLDEaTa~lD~~Td~~Iq~~i~~~f~~~TvI~IaH 1248 (1300)
.+.+-..+++..++++. |++...++.....+....+.+.+... ..+|++++++
T Consensus 153 ~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~~~-~~r~i~Vitk 207 (306)
T d1jwyb_ 153 IEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPE-GKRTIGVITK 207 (306)
T ss_dssp SHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSS-CSSEEEEEEC
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHCCC-CCEEEEEEEC
T ss_conf 899999999999827775168763256310034999999973867-8858999820
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.06 E-value=0.15 Score=24.54 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999847999958999997312
Q 000755 647 RVAVCGTVGSGKSSLLSCILGE 668 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilGe 668 (1300)
+++++|..|+|||||++.+.+.
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999991989999999739
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=89.04 E-value=0.086 Score=26.49 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998479999589999973126
Q 000755 648 VAVCGTVGSGKSSLLSCILGEV 669 (1300)
Q Consensus 648 vaIvG~~GSGKSTLL~~ilGe~ 669 (1300)
+|++|.+++|||||++.|.|.-
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999998999999996899
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.95 E-value=0.16 Score=24.45 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999847999958999997312
Q 000755 647 RVAVCGTVGSGKSSLLSCILGE 668 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilGe 668 (1300)
.++|+|+.|+|||||++.+.+.
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998989999999809
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.93 E-value=0.15 Score=24.66 Aligned_cols=23 Identities=30% Similarity=0.307 Sum_probs=20.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999979998599999999517
Q 000755 1083 MKTGIVGRTGSGKSTLIQTLFRI 1105 (1300)
Q Consensus 1083 ekigIVGrTGsGKSTLl~~L~rl 1105 (1300)
.||.++|++|+|||||++.|.+-
T Consensus 1 ~KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 1 GKLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98999999999999999999589
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=88.89 E-value=0.17 Score=24.28 Aligned_cols=55 Identities=15% Similarity=0.256 Sum_probs=32.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCC--CCCCCHHHHHHCCC
Q ss_conf 89399998479999589999973126588637997493899815886--88887889984299
Q 000755 644 HGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPW--IQSGNIEDNILFGK 704 (1300)
Q Consensus 644 ~G~~vaIvG~~GSGKSTLL~~ilGe~~~~~G~I~v~g~iayv~Q~pw--i~~gTIreNIlfG~ 704 (1300)
+|.+++|-|..||||||+...+...+... |. ........|+ -....+++...-+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~~~-g~-----~~~~~~~ep~~~~~g~~i~~~~~~~~ 57 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLEQL-GI-----RDMVFTREPGGTQLAEKLRSLLLDIK 57 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHT-TC-----CCEEEEESSCSSHHHHHHHHHHHSTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHC-CC-----CEEEEECCCCCCCCHHHHHHHHHCCC
T ss_conf 98789998998887999999999999967-99-----73998329899611445589884621
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=88.81 E-value=0.44 Score=20.95 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=16.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984799995899999731
Q 000755 647 RVAVCGTVGSGKSSLLSCILG 667 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilG 667 (1300)
+++++|..|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899588999999972
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.81 E-value=0.17 Score=24.24 Aligned_cols=22 Identities=32% Similarity=0.610 Sum_probs=17.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999847999958999997312
Q 000755 647 RVAVCGTVGSGKSSLLSCILGE 668 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilGe 668 (1300)
+++++|..|+|||||++.+.+.
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999996989999999709
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=88.72 E-value=0.16 Score=24.37 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998479999589999973126
Q 000755 647 RVAVCGTVGSGKSSLLSCILGEV 669 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilGe~ 669 (1300)
.+.++|++||||||+.+.|.-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 49998999999999999999996
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=88.63 E-value=0.16 Score=24.37 Aligned_cols=26 Identities=27% Similarity=0.261 Sum_probs=22.1
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 48939999979998599999999517
Q 000755 1080 PGGMKTGIVGRTGSGKSTLIQTLFRI 1105 (1300)
Q Consensus 1080 ~~GekigIVGrTGsGKSTLl~~L~rl 1105 (1300)
++.-||.+||+.|+|||||++.|.+-
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98579999999998989999999668
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=88.49 E-value=0.087 Score=26.45 Aligned_cols=26 Identities=35% Similarity=0.546 Sum_probs=22.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 93999984799995899999731265
Q 000755 645 GMRVAVCGTVGSGKSSLLSCILGEVP 670 (1300)
Q Consensus 645 G~~vaIvG~~GSGKSTLL~~ilGe~~ 670 (1300)
.-.++++|.+++|||||+++|.|.-.
T Consensus 16 ~~~I~lvG~~NvGKSSL~n~L~~~~~ 41 (188)
T d1puia_ 16 GIEVAFAGRSNAGKSSALNTLTNQKS 41 (188)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC--
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 97899988999989999999858985
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=88.36 E-value=0.19 Score=23.82 Aligned_cols=42 Identities=31% Similarity=0.342 Sum_probs=31.1
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCC--CCEEEECCEECC
Q ss_conf 489399999799985999999995177999--526999896468
Q 000755 1080 PGGMKTGIVGRTGSGKSTLIQTLFRIVEPT--AGEIVIDGINIS 1121 (1300)
Q Consensus 1080 ~~GekigIVGrTGsGKSTLl~~L~rl~~p~--~G~I~Idg~di~ 1121 (1300)
+.|..|-+.|.+||||||+.+.|....... --.+.+||-++.
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR 65 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 65 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHH
T ss_conf 99869999899999989999999988777427508997536788
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=88.31 E-value=0.15 Score=24.63 Aligned_cols=24 Identities=33% Similarity=0.414 Sum_probs=20.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399999799985999999995177
Q 000755 1083 MKTGIVGRTGSGKSTLIQTLFRIV 1106 (1300)
Q Consensus 1083 ekigIVGrTGsGKSTLl~~L~rl~ 1106 (1300)
..|-++|++||||||+.+.|...+
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 749998999999999999999996
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=88.28 E-value=0.34 Score=21.85 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=12.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 89399998479999589999973
Q 000755 644 HGMRVAVCGTVGSGKSSLLSCIL 666 (1300)
Q Consensus 644 ~G~~vaIvG~~GSGKSTLL~~il 666 (1300)
.|.-+.++|++|+||||+...++
T Consensus 13 ~g~gvl~~G~sG~GKStlal~l~ 35 (176)
T d1kkma_ 13 YGLGVLITGDSGVGKSETALELV 35 (176)
T ss_dssp TTEEEEEECCTTSCHHHHHHHHH
T ss_pred CCEEEEEEECCCCCHHHHHHHHH
T ss_conf 99999998089999899999999
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=88.25 E-value=0.19 Score=23.78 Aligned_cols=20 Identities=40% Similarity=0.624 Sum_probs=16.0
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998479999589999973
Q 000755 647 RVAVCGTVGSGKSSLLSCIL 666 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~il 666 (1300)
.++|+|..||||||..+.+-
T Consensus 5 iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99978988688999999999
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.23 E-value=0.19 Score=23.77 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984799995899999731
Q 000755 647 RVAVCGTVGSGKSSLLSCILG 667 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilG 667 (1300)
+++++|..|+|||||++.+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999971
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.21 E-value=0.23 Score=23.17 Aligned_cols=55 Identities=13% Similarity=0.119 Sum_probs=32.1
Q ss_pred CHHHHHHHHHHHHHCCCCC--EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 9469999999998715998--8998578769899999999999998269927999927
Q 000755 1193 SMGQRQLVCLGRVLLKKSK--VLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAH 1248 (1300)
Q Consensus 1193 S~GQrQll~LARaLL~~~~--ILiLDEaTa~lD~~Td~~Iq~~i~~~f~~~TvI~IaH 1248 (1300)
...+.+-..+.+..+.++. |++++.++..+.......+.+.+... ..+|++++++
T Consensus 145 ~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~~~~~~~-~~r~i~Vltk 201 (299)
T d2akab1 145 PDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQ-GQRTIGVITK 201 (299)
T ss_dssp TTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTT-CSSEEEEEEC
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCC-CCCEEEEEEC
T ss_conf 14799999999998627560356640345421125999999973867-7813667702
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.13 E-value=0.2 Score=23.70 Aligned_cols=28 Identities=14% Similarity=0.262 Sum_probs=24.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8939999847999958999997312658
Q 000755 644 HGMRVAVCGTVGSGKSSLLSCILGEVPK 671 (1300)
Q Consensus 644 ~G~~vaIvG~~GSGKSTLL~~ilGe~~~ 671 (1300)
+|.++++-|.-||||||+.+.+.-.+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 7689999899888699999999999971
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.12 E-value=0.34 Score=21.80 Aligned_cols=21 Identities=29% Similarity=0.643 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999859999999951
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFR 1104 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~r 1104 (1300)
||.++|.+|+|||||++.+.+
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899798999999970
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=88.11 E-value=0.18 Score=23.91 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999859999999951
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFR 1104 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~r 1104 (1300)
.|||+|..||||||+.+.|-.
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999888887889999999998
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=88.08 E-value=0.16 Score=24.34 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=19.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999847999958999997312
Q 000755 646 MRVAVCGTVGSGKSSLLSCILGE 668 (1300)
Q Consensus 646 ~~vaIvG~~GSGKSTLL~~ilGe 668 (1300)
-+++++|+.|+|||||++.+.+.
T Consensus 17 ~kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 17 VRILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEEECCCCCCHHHHHHHHHCC
T ss_conf 79999999998999999999648
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.97 E-value=0.19 Score=23.85 Aligned_cols=22 Identities=32% Similarity=0.311 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979998599999999517
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFRI 1105 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~rl 1105 (1300)
.|.|+|+.|+|||||++.|.+-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998989999999809
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=87.79 E-value=0.51 Score=20.49 Aligned_cols=44 Identities=16% Similarity=0.191 Sum_probs=25.1
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHH
Q ss_conf 998899857876989999999999999826992799992790244
Q 000755 1209 KSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSV 1253 (1300)
Q Consensus 1209 ~~~ILiLDEaTa~lD~~Td~~Iq~~i~~~f~~~TvI~IaHrl~ti 1253 (1300)
+.+|+++||+-. +..++...+.++|.+.-.++..|.++++.+.+
T Consensus 108 ~~kviIide~d~-l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~l 151 (207)
T d1a5ta2 108 GAKVVWVTDAAL-LTDAAANALLKTLEEPPAETWFFLATREPERL 151 (207)
T ss_dssp SCEEEEESCGGG-BCHHHHHHHHHHHTSCCTTEEEEEEESCGGGS
T ss_pred CCCEEEECHHHH-HHHHHHHHHHHHHHHHCCCCEEEEEECCHHHH
T ss_conf 640477313442-00001499999998501111045530686551
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=87.73 E-value=0.25 Score=22.95 Aligned_cols=29 Identities=24% Similarity=0.401 Sum_probs=18.5
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 73893999984799995899999731265
Q 000755 642 VFHGMRVAVCGTVGSGKSSLLSCILGEVP 670 (1300)
Q Consensus 642 i~~G~~vaIvG~~GSGKSTLL~~ilGe~~ 670 (1300)
.++|..+.+.|+.|||||||.+.++..+-
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~lg 58 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 79982999966877658899999876422
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.61 E-value=0.16 Score=24.37 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999997999859999999951779
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFRIVE 1107 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~rl~~ 1107 (1300)
.|.++|+.||||||+.+.|.+...
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999989999999999999999997
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=87.51 E-value=0.23 Score=23.23 Aligned_cols=31 Identities=26% Similarity=0.320 Sum_probs=24.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 93999997999859999999951779995269998
Q 000755 1082 GMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVID 1116 (1300)
Q Consensus 1082 GekigIVGrTGsGKSTLl~~L~rl~~p~~G~I~Id 1116 (1300)
...|.|+|+.||||||+...|..-+ |-+.|+
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~~----g~~~i~ 36 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRDF----GWVHLS 36 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH----CCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH----CCCEEC
T ss_conf 9489998999998899999999997----992672
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.50 E-value=0.38 Score=21.44 Aligned_cols=21 Identities=38% Similarity=0.512 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984799995899999731
Q 000755 647 RVAVCGTVGSGKSSLLSCILG 667 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilG 667 (1300)
+++++|..|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999999799999999973
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.49 E-value=0.22 Score=23.25 Aligned_cols=22 Identities=41% Similarity=0.585 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999847999958999997312
Q 000755 647 RVAVCGTVGSGKSSLLSCILGE 668 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilGe 668 (1300)
+++++|..|+|||||++.+++.
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990989999999829
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.45 E-value=0.22 Score=23.25 Aligned_cols=21 Identities=29% Similarity=0.407 Sum_probs=17.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984799995899999731
Q 000755 647 RVAVCGTVGSGKSSLLSCILG 667 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilG 667 (1300)
+++++|..|+|||||++.+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999982
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=87.35 E-value=0.23 Score=23.22 Aligned_cols=23 Identities=43% Similarity=0.556 Sum_probs=19.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999979998599999999517
Q 000755 1083 MKTGIVGRTGSGKSTLIQTLFRI 1105 (1300)
Q Consensus 1083 ekigIVGrTGsGKSTLl~~L~rl 1105 (1300)
-.|||+|..||||||+...|-.+
T Consensus 4 ~IIgitG~~gSGKstva~~l~~~ 26 (191)
T d1uf9a_ 4 IIIGITGNIGSGKSTVAALLRSW 26 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 89999898877899999999987
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.33 E-value=0.54 Score=20.30 Aligned_cols=21 Identities=38% Similarity=0.650 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984799995899999731
Q 000755 647 RVAVCGTVGSGKSSLLSCILG 667 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilG 667 (1300)
+++++|..|+|||||++.+.+
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899789999999973
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.24 E-value=0.26 Score=22.75 Aligned_cols=57 Identities=14% Similarity=0.283 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-----CCCEEEEEECCCCC
Q ss_conf 7899999999998059988998167778899899999999997602-----99579999059883
Q 000755 744 GGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-----RSKTVIYVTHQVEF 803 (1300)
Q Consensus 744 GGQkqRIaLARAly~~a~IllLDdp~SalD~~t~~~if~~~i~~~l-----~~kTvIlvTH~l~~ 803 (1300)
+||..==.+.+..|++++.+++ .++.-|..+-..+. ....... .+..+++|.+..+.
T Consensus 72 ~G~e~~~~~~~~~~~~~~~~i~--v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iilv~nK~Dl 133 (186)
T d2f7sa1 72 AGQERFRSLTTAFFRDAMGFLL--MFDLTSQQSFLNVR-NWMSQLQANAYCENPDIVLIGNKADL 133 (186)
T ss_dssp ESHHHHHHHHHHHHTTCCEEEE--EEETTCHHHHHHHH-HHHHTCCCCCTTTCCEEEEEEECTTC
T ss_pred CCCHHHHHHHHHHHHCCCEEEE--EEECCCCCCCEEEE-ECCCHHHHHCCCCCCEEEEEEEECCC
T ss_conf 8645668899999726988999--99632345411454-21120122136778429999631241
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=87.22 E-value=0.28 Score=22.49 Aligned_cols=28 Identities=18% Similarity=0.240 Sum_probs=21.3
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 7389399998479999589999973126
Q 000755 642 VFHGMRVAVCGTVGSGKSSLLSCILGEV 669 (1300)
Q Consensus 642 i~~G~~vaIvG~~GSGKSTLL~~ilGe~ 669 (1300)
+++|+++.|.|++|+|||+|..-++-..
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 6288599999179999899999999999
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=87.16 E-value=0.22 Score=23.36 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979998599999999517
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFRI 1105 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~rl 1105 (1300)
.|+|+|+..+|||||+++|.+-
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 7999969985499999999823
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.93 E-value=0.17 Score=24.20 Aligned_cols=27 Identities=33% Similarity=0.426 Sum_probs=23.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 893999997999859999999951779
Q 000755 1081 GGMKTGIVGRTGSGKSTLIQTLFRIVE 1107 (1300)
Q Consensus 1081 ~GekigIVGrTGsGKSTLl~~L~rl~~ 1107 (1300)
.+..|+|-|..||||||+++.|...++
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998899987888779999999999973
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.85 E-value=0.24 Score=23.00 Aligned_cols=23 Identities=26% Similarity=0.262 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799985999999995177
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFRIV 1106 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~rl~ 1106 (1300)
.|||-|.+|||||||...|...+
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L 51 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHL 51 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99837998788999999999999
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=86.72 E-value=0.14 Score=24.95 Aligned_cols=116 Identities=15% Similarity=0.155 Sum_probs=47.4
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEECCCCCCCCCCHHHHCCCCCCCCHH
Q ss_conf 48939999979998599999999517799952699989646888977773021888178877865478713879889999
Q 000755 1080 PGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEEYKDE 1159 (1300)
Q Consensus 1080 ~~GekigIVGrTGsGKSTLl~~L~rl~~p~~G~I~Idg~di~~i~l~~lR~~i~iIpQdp~lF~gTiR~NLdp~~~~sd~ 1159 (1300)
+.+..|-|+|+.||||||+.+.|..-+ |-..|+.-|+ +|..+ ... ....-.+.+.++.....+|+
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~~----g~~~is~g~l-------lr~~~---~~~-~~~~~~~~~~~~~~~~~~~~ 70 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQKY----GYTHLSTGDL-------LRAEV---SSG-SARGKMLSEIMEKGQLVPLE 70 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHHT----CCEEEEHHHH-------HHHHH---HHT-CHHHHHHHHHHTTTCCCCHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH----CCEEEECCHH-------HHHHH---HHH-HHHHHHHHHHHHHCCCCCHH
T ss_conf 678289998999998799999999986----9846833478-------99999---876-76514567777631377622
Q ss_pred HHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 99999998399678972107876312369998894699999999987159988998578
Q 000755 1160 EIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEA 1218 (1300)
Q Consensus 1160 ei~~aL~~~~L~~~i~~~~~~Ld~~v~e~g~nlS~GQrQll~LARaLL~~~~ILiLDEa 1218 (1300)
.+...+... +..........+-++ +..-..|.-.+.+.+.....++.++.+
T Consensus 71 ~~~~~~~~~-----l~~~~~~~~g~ildg---~pr~~~qa~~~~~~~~~~~~~~~~~~~ 121 (194)
T d3adka_ 71 TVLDMLRDA-----MVAKVDTSKGFLIDG---YPREVKQGEEFERKIGQPTLLLYVDAG 121 (194)
T ss_dssp HHHHHHHHH-----HHTTTTTCSCEEEES---CCSSHHHHHHHHHHTCCCSEEEEEECC
T ss_pred EEEEEHHHH-----HHHCCCCCCCCEEEE---CCCHHHHHHHHHHHHCCCCCHHCCCCC
T ss_conf 244102456-----640322356602431---110157899999983775200003331
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=86.67 E-value=0.12 Score=25.44 Aligned_cols=40 Identities=13% Similarity=0.135 Sum_probs=29.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCC
Q ss_conf 3999984799995899999731265886379974938998158868
Q 000755 646 MRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWI 691 (1300)
Q Consensus 646 ~~vaIvG~~GSGKSTLL~~ilGe~~~~~G~I~v~g~iayv~Q~pwi 691 (1300)
-.++|+|++||||||+.+.+...+... +-+.+.++|+.+-
T Consensus 5 pIIgIaG~SGSGKTTva~~l~~i~~~~------~v~~~iI~~Dsfy 44 (288)
T d1a7ja_ 5 PIISVTGSSGAGTSTVKHTFDQIFRRE------GVKAVSIEGDAFH 44 (288)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHH------TCCEEEEEGGGGB
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHC------CCCEEEEECCCCC
T ss_conf 899998999780999999999997156------9976999477787
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=86.66 E-value=0.23 Score=23.12 Aligned_cols=25 Identities=40% Similarity=0.647 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9399999799985999999995177
Q 000755 1082 GMKTGIVGRTGSGKSTLIQTLFRIV 1106 (1300)
Q Consensus 1082 GekigIVGrTGsGKSTLl~~L~rl~ 1106 (1300)
.-+|||.|+-|||||||+..|.+.+
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 1598611799888999999999987
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=86.64 E-value=0.28 Score=22.46 Aligned_cols=28 Identities=25% Similarity=0.248 Sum_probs=23.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8939999847999958999997312658
Q 000755 644 HGMRVAVCGTVGSGKSSLLSCILGEVPK 671 (1300)
Q Consensus 644 ~G~~vaIvG~~GSGKSTLL~~ilGe~~~ 671 (1300)
.+..+.|.|+.|+|||||+..++.+...
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~~~ 55 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINELNL 55 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 5987999869998299999999997799
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=86.63 E-value=0.093 Score=26.22 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999997999859999999951779
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFRIVE 1107 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~rl~~ 1107 (1300)
.|||.|.+||||||+.++|.....
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999989997809999999999971
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.57 E-value=0.24 Score=22.96 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979998599999999517
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFRI 1105 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~rl 1105 (1300)
||.++|..|+|||||++.+.+-
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999991989999999739
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=86.48 E-value=0.43 Score=21.06 Aligned_cols=29 Identities=28% Similarity=0.269 Sum_probs=19.9
Q ss_pred EEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 59964893999997999859999999951
Q 000755 1076 TCTFPGGMKTGIVGRTGSGKSTLIQTLFR 1104 (1300)
Q Consensus 1076 s~~i~~GekigIVGrTGsGKSTLl~~L~r 1104 (1300)
++---.|.-+.|.|++|+||||+...|.+
T Consensus 9 ~~v~~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 9 VLVDVYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EEEEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 99999999999980899999999999998
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=86.37 E-value=0.21 Score=23.44 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=21.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399999799985999999995177
Q 000755 1083 MKTGIVGRTGSGKSTLIQTLFRIV 1106 (1300)
Q Consensus 1083 ekigIVGrTGsGKSTLl~~L~rl~ 1106 (1300)
-.|+|-|..||||||+++.|.+-.
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 199988999988899999999870
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.32 E-value=0.29 Score=22.40 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999847999958999997312
Q 000755 647 RVAVCGTVGSGKSSLLSCILGE 668 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilGe 668 (1300)
+++++|..|+|||||++.+.+.
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998993999999999719
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.31 E-value=0.28 Score=22.51 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=22.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 39999847999958999997312658
Q 000755 646 MRVAVCGTVGSGKSSLLSCILGEVPK 671 (1300)
Q Consensus 646 ~~vaIvG~~GSGKSTLL~~ilGe~~~ 671 (1300)
..+.+.||+|+||||+++++..++..
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~~~ 78 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQELGY 78 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 44999879999888999999999875
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.24 E-value=0.26 Score=22.70 Aligned_cols=21 Identities=33% Similarity=0.613 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999859999999951
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFR 1104 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~r 1104 (1300)
||.++|+.|+|||||++.+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999698999999970
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.24 E-value=0.53 Score=20.35 Aligned_cols=21 Identities=33% Similarity=0.529 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999859999999951
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFR 1104 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~r 1104 (1300)
||.++|..|+|||||++.+..
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999999799999999973
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=86.12 E-value=0.29 Score=22.35 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999847999958999997312
Q 000755 647 RVAVCGTVGSGKSSLLSCILGE 668 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilGe 668 (1300)
+++++|+.|+|||||++.+.+.
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998989999999719
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=86.10 E-value=0.22 Score=23.31 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999984799995899999731265
Q 000755 647 RVAVCGTVGSGKSSLLSCILGEVP 670 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilGe~~ 670 (1300)
.++|-||+||||||..+.|.-.+.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789998798999999999969
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.10 E-value=0.31 Score=22.15 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=22.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89399998479999589999973126
Q 000755 644 HGMRVAVCGTVGSGKSSLLSCILGEV 669 (1300)
Q Consensus 644 ~G~~vaIvG~~GSGKSTLL~~ilGe~ 669 (1300)
+-..++|+||.||||||+.+.|...+
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 97289998999999899999999985
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.08 E-value=0.27 Score=22.67 Aligned_cols=21 Identities=33% Similarity=0.608 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999859999999951
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFR 1104 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~r 1104 (1300)
||.++|..|+|||||++.+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999971
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.06 E-value=0.26 Score=22.75 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=17.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999847999958999997312
Q 000755 647 RVAVCGTVGSGKSSLLSCILGE 668 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilGe 668 (1300)
+++++|..|+|||||++.+.+.
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999996789999999868
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=86.00 E-value=0.32 Score=22.05 Aligned_cols=22 Identities=36% Similarity=0.652 Sum_probs=13.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979998599999999517
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFRI 1105 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~rl 1105 (1300)
.|||+|...+|||||+.+|.+.
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~ 28 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGV 28 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 9999934588499999999703
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=86.00 E-value=0.27 Score=22.66 Aligned_cols=28 Identities=29% Similarity=0.374 Sum_probs=23.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 9999847999958999997312658863
Q 000755 647 RVAVCGTVGSGKSSLLSCILGEVPKISG 674 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilGe~~~~~G 674 (1300)
.+.+.||.|+||||+.+++..++....+
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~~~~ 64 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQTNIH 64 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 4898799997388999999850388853
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.91 E-value=0.28 Score=22.54 Aligned_cols=22 Identities=36% Similarity=0.610 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979998599999999517
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFRI 1105 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~rl 1105 (1300)
|+.+||..|+|||||++.+..-
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990989999999829
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=85.90 E-value=0.22 Score=23.35 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=10.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984799995899999731
Q 000755 647 RVAVCGTVGSGKSSLLSCILG 667 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilG 667 (1300)
.+.|.|+.||||||+.+.|.-
T Consensus 5 ~I~i~GppGsGKsT~a~~La~ 25 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKT 25 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999988999998999999999
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.83 E-value=0.34 Score=21.86 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998479999589999973126
Q 000755 647 RVAVCGTVGSGKSSLLSCILGEV 669 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilGe~ 669 (1300)
+++++|..|+|||||++.+.+.-
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99998989939999999981885
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=85.82 E-value=0.27 Score=22.62 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998479999589999973126
Q 000755 647 RVAVCGTVGSGKSSLLSCILGEV 669 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilGe~ 669 (1300)
-+||+|.+.+|||||+.+|+|..
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHH
T ss_conf 99999345884999999997034
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.78 E-value=0.39 Score=21.41 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999847999958999997312
Q 000755 647 RVAVCGTVGSGKSSLLSCILGE 668 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilGe 668 (1300)
+++++|..|+|||||++.+.+.
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997998999999999809
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=85.74 E-value=0.27 Score=22.56 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=19.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 3999997999859999999951
Q 000755 1083 MKTGIVGRTGSGKSTLIQTLFR 1104 (1300)
Q Consensus 1083 ekigIVGrTGsGKSTLl~~L~r 1104 (1300)
=||.+||+.|+|||||++.+.+
T Consensus 17 ~kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 17 VRILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHHC
T ss_conf 7999999999899999999964
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.64 E-value=0.34 Score=21.80 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=9.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999859999999951
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFR 1104 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~r 1104 (1300)
+|.|+|+.||||||..+.|..
T Consensus 3 iI~i~GppGSGKsT~a~~La~ 23 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVE 23 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999979999998999999999
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.62 E-value=0.42 Score=21.10 Aligned_cols=25 Identities=36% Similarity=0.501 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999847999958999997312658
Q 000755 647 RVAVCGTVGSGKSSLLSCILGEVPK 671 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilGe~~~ 671 (1300)
+++++|..|+|||||++.+.+....
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~~ 29 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHDS 29 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCCT
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 9999998992999999999728677
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.57 E-value=0.33 Score=21.98 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999847999958999997312
Q 000755 647 RVAVCGTVGSGKSSLLSCILGE 668 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilGe 668 (1300)
+++|+|..|+|||||++.+++.
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999993999999999629
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=85.51 E-value=0.34 Score=21.80 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=13.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998479999589999973126
Q 000755 647 RVAVCGTVGSGKSSLLSCILGEV 669 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilGe~ 669 (1300)
.+.|+|+.||||||+.+.|.-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999987
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=85.50 E-value=0.31 Score=22.16 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979998599999999517
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFRI 1105 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~rl 1105 (1300)
.|||+|..||||||..+.|-.+
T Consensus 5 iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9997898868899999999987
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=85.50 E-value=0.25 Score=22.83 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=14.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998479999589999973126
Q 000755 647 RVAVCGTVGSGKSSLLSCILGEV 669 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilGe~ 669 (1300)
.+.|+|+.||||||+.+.|.-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999899999999987
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=85.47 E-value=0.22 Score=23.27 Aligned_cols=34 Identities=24% Similarity=0.319 Sum_probs=28.4
Q ss_pred CCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 1116873893999984799995899999731265
Q 000755 637 DINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVP 670 (1300)
Q Consensus 637 ~inl~i~~G~~vaIvG~~GSGKSTLL~~ilGe~~ 670 (1300)
|.=+.+-+|++.+|.|+.|+|||+|+..|.....
T Consensus 35 D~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~ 68 (289)
T d1xpua3 35 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 68 (289)
T ss_dssp HHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred EECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 4125645787556867999887899999999775
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.46 E-value=0.34 Score=21.87 Aligned_cols=21 Identities=38% Similarity=0.544 Sum_probs=17.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984799995899999731
Q 000755 647 RVAVCGTVGSGKSSLLSCILG 667 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilG 667 (1300)
+++++|..|+|||||++.+.+
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999799999999984
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=85.44 E-value=0.4 Score=21.32 Aligned_cols=42 Identities=21% Similarity=0.271 Sum_probs=29.9
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCC
Q ss_conf 389399998479999589999973126588637997493899815886
Q 000755 643 FHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPW 690 (1300)
Q Consensus 643 ~~G~~vaIvG~~GSGKSTLL~~ilGe~~~~~G~I~v~g~iayv~Q~pw 690 (1300)
+++..++++||+|+||||-+.-|...+.. .| .+++.+.-+.+
T Consensus 4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~~-~g-----~kV~lit~Dt~ 45 (207)
T d1okkd2 4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQN-LG-----KKVMFCAGDTF 45 (207)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHHT-TT-----CCEEEECCCCS
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHH-CC-----CCEEEEEECCC
T ss_conf 99779999899999889999999999997-79-----90799981366
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=85.35 E-value=0.35 Score=21.70 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799985999999995177
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFRIV 1106 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~rl~ 1106 (1300)
+|-|+|+.||||||+...|..-+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999899999999987
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.33 E-value=0.27 Score=22.57 Aligned_cols=46 Identities=24% Similarity=0.300 Sum_probs=27.1
Q ss_pred EEEEEEECCCCCCCCEECCEEEEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 96899834999999300111687389399998479999589999973126
Q 000755 620 VDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEV 669 (1300)
Q Consensus 620 ~~~~fsw~~~~~~~~L~~inl~i~~G~~vaIvG~~GSGKSTLL~~ilGe~ 669 (1300)
+++.+..+++. -..|+.++= |=..++|+|+.++|||+||+.++|..
T Consensus 11 ~~~~l~~~~e~-l~~l~~~~~---~v~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 11 TNGRLMANPEA-LKILSAITQ---PMVVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp ETTEEEECHHH-HHHHHTCCS---BEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CCCEEEECHHH-HHHHHCCCC---CEEEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99949989999-999970799---87999988999997999999980998
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.31 E-value=0.67 Score=19.56 Aligned_cols=45 Identities=13% Similarity=0.391 Sum_probs=35.0
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHH
Q ss_conf 9988998578769899999999999998269927999927902444
Q 000755 1209 KSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVI 1254 (1300)
Q Consensus 1209 ~~~ILiLDEaTa~lD~~Td~~Iq~~i~~~f~~~TvI~IaHrl~ti~ 1254 (1300)
+.+++++||+-. +.......+.+.+.+.-..+.+|.++++.+.+.
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~i~ 175 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPII 175 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSC
T ss_pred CCEEEEECCCCC-CCCCCCHHHHCCCCCCCCCCCCEEEECCCCCHH
T ss_conf 724999424333-454311122100221356643000102111002
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.20 E-value=0.35 Score=21.71 Aligned_cols=60 Identities=15% Similarity=0.270 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHH---HHHHHHHH-CCCCEEEEEECCCCCCC
Q ss_conf 7899999999998059988998167778899899999---99999760-29957999905988302
Q 000755 744 GGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHL---FKEVLLGL-LRSKTVIYVTHQVEFLP 805 (1300)
Q Consensus 744 GGQkqRIaLARAly~~a~IllLDdp~SalD~~t~~~i---f~~~i~~~-l~~kTvIlvTH~l~~l~ 805 (1300)
|++..+-...+..|++++.+++ .++.-|..+-..+ +.++.... ..+..+++|-+..+...
T Consensus 60 ~~~~~~~~~~~~~~~~~d~~il--v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~ 123 (165)
T d1z06a1 60 GQERFRKSMVQHYYRNVHAVVF--VYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS 123 (165)
T ss_dssp CSHHHHTTTHHHHHTTCCEEEE--EEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGG
T ss_pred CCHHHCCCCCEEEECCCCCEEE--EEEEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHH
T ss_conf 7311032121036427882499--998523566665542127877632589971999921355001
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.17 E-value=0.35 Score=21.77 Aligned_cols=22 Identities=27% Similarity=0.373 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999847999958999997312
Q 000755 647 RVAVCGTVGSGKSSLLSCILGE 668 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilGe 668 (1300)
+++++|..|+|||||++.+++.
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999997999999999749
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=85.16 E-value=0.37 Score=21.59 Aligned_cols=31 Identities=26% Similarity=0.423 Sum_probs=23.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHC---CCCCCCCEE
Q ss_conf 3999997999859999999951---779995269
Q 000755 1083 MKTGIVGRTGSGKSTLIQTLFR---IVEPTAGEI 1113 (1300)
Q Consensus 1083 ekigIVGrTGsGKSTLl~~L~r---l~~p~~G~I 1113 (1300)
-+|+|-||.||||||+.+.|.. +....+|.+
T Consensus 4 i~IaIdGp~GsGKgT~ak~La~~lg~~~istGdl 37 (223)
T d1q3ta_ 4 IQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAM 37 (223)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCEECHHHH
T ss_conf 5999789998798999999999969947877999
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=85.13 E-value=0.27 Score=22.56 Aligned_cols=24 Identities=29% Similarity=0.290 Sum_probs=20.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399999799985999999995177
Q 000755 1083 MKTGIVGRTGSGKSTLIQTLFRIV 1106 (1300)
Q Consensus 1083 ekigIVGrTGsGKSTLl~~L~rl~ 1106 (1300)
.+|.|.|+.||||||+.+.|..-+
T Consensus 4 m~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 4 LKVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 299998899999899999999987
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.09 E-value=0.39 Score=21.34 Aligned_cols=22 Identities=41% Similarity=0.507 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979998599999999517
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFRI 1105 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~rl 1105 (1300)
||.++|..|+|||||++.+..-
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997998999999999809
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=85.06 E-value=0.25 Score=22.88 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=17.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999847999958999997312658
Q 000755 647 RVAVCGTVGSGKSSLLSCILGEVPK 671 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilGe~~~ 671 (1300)
.+.|.|+.||||||+.+.|...+..
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~~ 27 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9999898998989999999999987
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=85.06 E-value=0.27 Score=22.58 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399999799985999999995177
Q 000755 1083 MKTGIVGRTGSGKSTLIQTLFRIV 1106 (1300)
Q Consensus 1083 ekigIVGrTGsGKSTLl~~L~rl~ 1106 (1300)
.+|-|+|+.||||||+...|..-+
T Consensus 1 M~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 1 MNIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 989998899998799999999987
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=85.05 E-value=0.24 Score=23.08 Aligned_cols=46 Identities=20% Similarity=0.343 Sum_probs=32.4
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHC
Q ss_conf 99889985787698999999999999982699279999279024440
Q 000755 1209 KSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVID 1255 (1300)
Q Consensus 1209 ~~~ILiLDEaTa~lD~~Td~~Iq~~i~~~f~~~TvI~IaHrl~ti~~ 1255 (1300)
+..|+++||.- .+.......+...+......+.+|.++++.+.+..
T Consensus 109 ~~~iilide~d-~~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~~i~~ 154 (231)
T d1iqpa2 109 SFKIIFLDEAD-ALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIE 154 (231)
T ss_dssp SCEEEEEETGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCH
T ss_pred CCEEEEEHHHH-HCCHHHHHHHHHHCCCCCCCEEEEECCCCHHHCHH
T ss_conf 72288614344-31214789876411247764478861487665657
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.05 E-value=0.31 Score=22.15 Aligned_cols=22 Identities=32% Similarity=0.379 Sum_probs=16.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 3999984799995899999731
Q 000755 646 MRVAVCGTVGSGKSSLLSCILG 667 (1300)
Q Consensus 646 ~~vaIvG~~GSGKSTLL~~ilG 667 (1300)
-+++++|..|+|||||++.+.+
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 3899999899298999999971
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=85.04 E-value=0.54 Score=20.26 Aligned_cols=42 Identities=24% Similarity=0.353 Sum_probs=29.7
Q ss_pred CCEECCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 930011168738939999847999958999997312658863799749
Q 000755 633 PTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG 680 (1300)
Q Consensus 633 ~~L~~inl~i~~G~~vaIvG~~GSGKSTLL~~ilGe~~~~~G~I~v~g 680 (1300)
..++.--+.+ .|.-+.++|++|+||||+...++. .|.-.+..
T Consensus 4 ~~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~-----~G~~lvaD 45 (177)
T d1knxa2 4 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN-----KNHLFVGD 45 (177)
T ss_dssp EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT-----TTCEEEEE
T ss_pred CEEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH-----CCCCEECC
T ss_conf 3178999999-999999981899998999999998-----59741658
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.03 E-value=0.32 Score=22.01 Aligned_cols=22 Identities=41% Similarity=0.492 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979998599999999517
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFRI 1105 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~rl 1105 (1300)
||.+||..|+|||||++.+..-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999993999999999629
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.03 E-value=0.42 Score=21.11 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979998599999999517
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFRI 1105 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~rl 1105 (1300)
||.+||..|+|||||++.+..-
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998993999999999719
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=85.00 E-value=0.065 Score=27.43 Aligned_cols=23 Identities=39% Similarity=0.608 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998479999589999973126
Q 000755 647 RVAVCGTVGSGKSSLLSCILGEV 669 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilGe~ 669 (1300)
+++++|.+|+|||||++++.|+-
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=84.93 E-value=0.34 Score=21.87 Aligned_cols=26 Identities=31% Similarity=0.507 Sum_probs=21.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 39999847999958999997312658
Q 000755 646 MRVAVCGTVGSGKSSLLSCILGEVPK 671 (1300)
Q Consensus 646 ~~vaIvG~~GSGKSTLL~~ilGe~~~ 671 (1300)
.+++|.|..||||||+++.|...+..
T Consensus 1 mlI~ieG~dGsGKST~~~~L~~~l~~ 26 (208)
T d1gsia_ 1 MLIAIEGVDGAGKRTLVEKLSGAFRA 26 (208)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 98999899878999999999999987
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.93 E-value=0.33 Score=21.95 Aligned_cols=21 Identities=38% Similarity=0.569 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999859999999951
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFR 1104 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~r 1104 (1300)
||.++|..|+|||||++.+..
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999982
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=84.84 E-value=0.24 Score=22.97 Aligned_cols=26 Identities=15% Similarity=0.253 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 93999984799995899999731265
Q 000755 645 GMRVAVCGTVGSGKSSLLSCILGEVP 670 (1300)
Q Consensus 645 G~~vaIvG~~GSGKSTLL~~ilGe~~ 670 (1300)
+.-+.++||+|+|||.|.+++..++.
T Consensus 49 ~~~iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 49 PKNILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 86699989999888899999862132
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.82 E-value=0.32 Score=22.01 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979998599999999517
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFRI 1105 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~rl 1105 (1300)
||.++|..|+|||||++.+..-
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999996789999999868
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.76 E-value=0.48 Score=20.65 Aligned_cols=21 Identities=43% Similarity=0.727 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999859999999951
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFR 1104 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~r 1104 (1300)
||.+||..|+|||||++.+..
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899789999999973
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.74 E-value=0.38 Score=21.45 Aligned_cols=21 Identities=33% Similarity=0.562 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984799995899999731
Q 000755 647 RVAVCGTVGSGKSSLLSCILG 667 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilG 667 (1300)
+++++|..|+|||||++.+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899499999999973
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.74 E-value=0.51 Score=20.45 Aligned_cols=24 Identities=29% Similarity=0.531 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999997999859999999951779
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFRIVE 1107 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~rl~~ 1107 (1300)
||.++|..|+|||||++.+.+...
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~ 28 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHD 28 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 999999899299999999972867
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=84.72 E-value=0.38 Score=21.42 Aligned_cols=21 Identities=24% Similarity=0.215 Sum_probs=15.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999859999999951
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFR 1104 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~r 1104 (1300)
.|||.|.-||||||+.+.|..
T Consensus 3 iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999979999889999999998
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=84.65 E-value=0.37 Score=21.60 Aligned_cols=22 Identities=32% Similarity=0.585 Sum_probs=14.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998479999589999973126
Q 000755 648 VAVCGTVGSGKSSLLSCILGEV 669 (1300)
Q Consensus 648 vaIvG~~GSGKSTLL~~ilGe~ 669 (1300)
++++|++||||||+.+.+...+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998899999999983
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=84.55 E-value=0.51 Score=20.48 Aligned_cols=29 Identities=34% Similarity=0.463 Sum_probs=23.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 39999979998599999999517799952
Q 000755 1083 MKTGIVGRTGSGKSTLIQTLFRIVEPTAG 1111 (1300)
Q Consensus 1083 ekigIVGrTGsGKSTLl~~L~rl~~p~~G 1111 (1300)
-+++|||+..+|||||+++|.+--....|
T Consensus 113 ~~v~vvG~PNvGKSsliN~L~~~~~~~~~ 141 (273)
T d1puja_ 113 IRALIIGIPNVGKSTLINRLAKKNIAKTG 141 (273)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCC---
T ss_pred EEEEEEECCCCCHHHHHHHHHCCCEEEEC
T ss_conf 27899866754435554254266158878
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=84.52 E-value=0.35 Score=21.74 Aligned_cols=35 Identities=20% Similarity=0.360 Sum_probs=25.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE
Q ss_conf 9399999799985999999995177999526999896
Q 000755 1082 GMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGI 1118 (1300)
Q Consensus 1082 GekigIVGrTGsGKSTLl~~L~rl~~p~~G~I~Idg~ 1118 (1300)
+.-+.++||||+|||.|.++|.+.... --+.+|+-
T Consensus 49 ~~~iLl~GPpG~GKT~lAkalA~~~~~--~~~~i~~s 83 (309)
T d1ofha_ 49 PKNILMIGPTGVGKTEIARRLAKLANA--PFIKVEAT 83 (309)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHTC--CEEEEEGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCCCC--CHHCCCCC
T ss_conf 866999899998888999998621322--10003443
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=84.49 E-value=0.4 Score=21.33 Aligned_cols=25 Identities=36% Similarity=0.474 Sum_probs=14.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9399998479999589999973126
Q 000755 645 GMRVAVCGTVGSGKSSLLSCILGEV 669 (1300)
Q Consensus 645 G~~vaIvG~~GSGKSTLL~~ilGe~ 669 (1300)
...++|+|+.||||||+...|.-.+
T Consensus 6 ~mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 6 LLRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHB
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 2169998899998799999999997
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=84.46 E-value=0.25 Score=22.90 Aligned_cols=26 Identities=31% Similarity=0.284 Sum_probs=20.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 39999847999958999997312658
Q 000755 646 MRVAVCGTVGSGKSSLLSCILGEVPK 671 (1300)
Q Consensus 646 ~~vaIvG~~GSGKSTLL~~ilGe~~~ 671 (1300)
..+.|+|++|||||+++..++-..-.
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li~~~~~ 76 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELAYTGLL 76 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 65899907999689999999999984
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.43 E-value=0.47 Score=20.72 Aligned_cols=27 Identities=33% Similarity=0.356 Sum_probs=23.9
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 964893999997999859999999951
Q 000755 1078 TFPGGMKTGIVGRTGSGKSTLIQTLFR 1104 (1300)
Q Consensus 1078 ~i~~GekigIVGrTGsGKSTLl~~L~r 1104 (1300)
-+++|..+-|.|++|+|||||..-+.-
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 986996999983899988999999999
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.41 E-value=0.34 Score=21.79 Aligned_cols=21 Identities=24% Similarity=0.523 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984799995899999731
Q 000755 647 RVAVCGTVGSGKSSLLSCILG 667 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilG 667 (1300)
+++++|..|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999972
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.39 E-value=0.39 Score=21.37 Aligned_cols=23 Identities=30% Similarity=0.418 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799985999999995177
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFRIV 1106 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~rl~ 1106 (1300)
||.++|..|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99998989939999999981885
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=84.31 E-value=0.35 Score=21.74 Aligned_cols=30 Identities=33% Similarity=0.481 Sum_probs=23.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 9999979998599999999517799952699989
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDG 1117 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~rl~~p~~G~I~Idg 1117 (1300)
.|.++|..||||||+.+.|...+ |--++|.
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~l----~~~~~d~ 31 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKDL----DLVFLDS 31 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH----TCEEEEH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH----CCCEEEC
T ss_conf 39998999998899999999983----9987836
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=84.19 E-value=0.56 Score=20.16 Aligned_cols=30 Identities=20% Similarity=0.197 Sum_probs=25.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 939999847999958999997312658863
Q 000755 645 GMRVAVCGTVGSGKSSLLSCILGEVPKISG 674 (1300)
Q Consensus 645 G~~vaIvG~~GSGKSTLL~~ilGe~~~~~G 674 (1300)
...+.+.||.|+|||++++.++..+....+
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~~~~ 72 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKDKTT 72 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 881688898999899999999999754468
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.18 E-value=0.41 Score=21.18 Aligned_cols=29 Identities=24% Similarity=0.221 Sum_probs=24.1
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 48939999979998599999999517799
Q 000755 1080 PGGMKTGIVGRTGSGKSTLIQTLFRIVEP 1108 (1300)
Q Consensus 1080 ~~GekigIVGrTGsGKSTLl~~L~rl~~p 1108 (1300)
+.|-.|.|.|.-||||||++..|...+..
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~ 29 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALCA 29 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 98059999899888999999999999987
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.18 E-value=0.36 Score=21.66 Aligned_cols=37 Identities=30% Similarity=0.452 Sum_probs=25.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC-----CCCCCCE-----EEECCEE
Q ss_conf 39999979998599999999517-----7999526-----9998964
Q 000755 1083 MKTGIVGRTGSGKSTLIQTLFRI-----VEPTAGE-----IVIDGIN 1119 (1300)
Q Consensus 1083 ekigIVGrTGsGKSTLl~~L~rl-----~~p~~G~-----I~Idg~d 1119 (1300)
-||.++|..|+|||||++.+..- +.|+.|. +.+||.+
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~ 51 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQE 51 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCEEEECCCEE
T ss_conf 38999998992989999999719888544754211310388317679
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.07 E-value=0.41 Score=21.17 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999847999958999997312
Q 000755 647 RVAVCGTVGSGKSSLLSCILGE 668 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilGe 668 (1300)
+++++|..|+|||||++.+++.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999729
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=84.01 E-value=0.39 Score=21.37 Aligned_cols=21 Identities=29% Similarity=0.438 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999859999999951
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFR 1104 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~r 1104 (1300)
||.++|+.|+|||||++.+..
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999898999999971
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=83.92 E-value=0.37 Score=21.58 Aligned_cols=22 Identities=14% Similarity=0.250 Sum_probs=13.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999847999958999997312
Q 000755 647 RVAVCGTVGSGKSSLLSCILGE 668 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilGe 668 (1300)
.+.++|+.||||||+.+.+.-.
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~ 25 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARA 25 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
T ss_conf 8899889999889999999999
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.92 E-value=0.4 Score=21.32 Aligned_cols=22 Identities=36% Similarity=0.578 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999847999958999997312
Q 000755 647 RVAVCGTVGSGKSSLLSCILGE 668 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilGe 668 (1300)
+++++|..|+|||||++.+.+.
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998990889999999719
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=83.90 E-value=0.23 Score=23.18 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=19.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8939999847999958999997312
Q 000755 644 HGMRVAVCGTVGSGKSSLLSCILGE 668 (1300)
Q Consensus 644 ~G~~vaIvG~~GSGKSTLL~~ilGe 668 (1300)
+.-+++++|..|+|||||++.+.+.
T Consensus 16 k~~KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 16 KELRILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CEEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 6689999999999889999887338
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.89 E-value=0.32 Score=22.07 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998479999589999973126
Q 000755 647 RVAVCGTVGSGKSSLLSCILGEV 669 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilGe~ 669 (1300)
.++|.||.||||||..+.|.-.+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99997999999899999999986
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.86 E-value=0.39 Score=21.37 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999859999999951
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFR 1104 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~r 1104 (1300)
||.++|..|+|||||++.+..
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999799999999974
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.85 E-value=0.42 Score=21.16 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979998599999999517
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFRI 1105 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~rl 1105 (1300)
||.++|..|+|||||++.+..-
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999991989999999619
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.77 E-value=0.39 Score=21.37 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999847999958999997312
Q 000755 647 RVAVCGTVGSGKSSLLSCILGE 668 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilGe 668 (1300)
+++++|..|+|||||++.+.+.
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997996989999999739
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.72 E-value=0.41 Score=21.22 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979998599999999517
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFRI 1105 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~rl 1105 (1300)
||.++|..|+|||||++.+..-
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999729
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=83.68 E-value=0.41 Score=21.20 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=15.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799985999999995177
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFRIV 1106 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~rl~ 1106 (1300)
+|.|+|+.||||||....|..-+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998799999899999999986
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=83.63 E-value=0.38 Score=21.42 Aligned_cols=41 Identities=17% Similarity=0.270 Sum_probs=29.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC----EEEEEECCC
Q ss_conf 9999847999958999997312658863799749----389981588
Q 000755 647 RVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG----TKAYVAQSP 689 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilGe~~~~~G~I~v~g----~iayv~Q~p 689 (1300)
-+.++||+|||||-|.+.|.+++..- -+.+++ ..+||..+.
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~VP--Fv~~daT~fTeaGYvG~DV 95 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANAP--FIKVEATKFTEVGYVGKEV 95 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCC--EEEEEGGGGC----CCCCT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCC--EEEEECCEEEECCEEECCH
T ss_conf 47998999988999999999873898--8986255114111110444
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=83.58 E-value=0.34 Score=21.86 Aligned_cols=31 Identities=29% Similarity=0.359 Sum_probs=23.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 39999979998599999999517799952699989
Q 000755 1083 MKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDG 1117 (1300)
Q Consensus 1083 ekigIVGrTGsGKSTLl~~L~rl~~p~~G~I~Idg 1117 (1300)
+.|-++|..||||||+.+.|..-+ |--++|+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L----g~~~id~ 33 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL----GYEFVDT 33 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH----TCEEEEH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHH----CCCEEEH
T ss_conf 988998899998899999999994----9987865
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.55 E-value=0.39 Score=21.41 Aligned_cols=22 Identities=27% Similarity=0.520 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979998599999999517
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFRI 1105 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~rl 1105 (1300)
|+.++|..|+|||||++.+..-
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=83.54 E-value=0.42 Score=21.15 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=20.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399998479999589999973126
Q 000755 646 MRVAVCGTVGSGKSSLLSCILGEV 669 (1300)
Q Consensus 646 ~~vaIvG~~GSGKSTLL~~ilGe~ 669 (1300)
..+.++|+.||||||..+.|.-.+
T Consensus 1 m~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 1 MRIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 989998799999899999999986
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=83.43 E-value=0.58 Score=20.02 Aligned_cols=154 Identities=16% Similarity=0.109 Sum_probs=68.8
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHH-CCCCCCCCEEEECCEECCCCCHHHHHCCCEEECCCCCCCCCCHHHHCCCCCCC
Q ss_conf 96489399999799985999999995-17799952699989646888977773021888178877865478713879889
Q 000755 1078 TFPGGMKTGIVGRTGSGKSTLIQTLF-RIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEEY 1156 (1300)
Q Consensus 1078 ~i~~GekigIVGrTGsGKSTLl~~L~-rl~~p~~G~I~Idg~di~~i~l~~lR~~i~iIpQdp~lF~gTiR~NLdp~~~~ 1156 (1300)
-+++|+.+-|.|++|+|||+|..-+. .........+.+.. ...+....+... .-++ .
T Consensus 22 Gi~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~s---~e~~~~~~~~~~------------------~~~~-~ 79 (242)
T d1tf7a1 22 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVT---FEETPQDIIKNA------------------RSFG-W 79 (242)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEE---SSSCHHHHHHHH------------------GGGT-C
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCC---CCCCHHHHHHHH------------------HHCC-C
T ss_conf 99698399999479999999999999999985688742012---667999999999------------------9849-9
Q ss_pred CHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHH-HHHHHHHHHHHCC--CCCEEEEECCCCCCC----HHH-HH
Q ss_conf 999999999983996789721078763123699988946-9999999998715--998899857876989----999-99
Q 000755 1157 KDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMG-QRQLVCLGRVLLK--KSKVLVLDEATASVD----TAT-DN 1228 (1300)
Q Consensus 1157 sd~ei~~aL~~~~L~~~i~~~~~~Ld~~v~e~g~nlS~G-QrQll~LARaLL~--~~~ILiLDEaTa~lD----~~T-d~ 1228 (1300)
..++. .+.-... ........+.-..++.. ...++.-.+..++ +++++++|--++-.+ ... ..
T Consensus 80 ~~~~~---~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~viiD~~~~l~~~~~~~~~~~~ 149 (242)
T d1tf7a1 80 DLAKL---VDEGKLF-------ILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRR 149 (242)
T ss_dssp CHHHH---HHTTSEE-------EEECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHH
T ss_pred CHHHH---HHHCCHH-------HHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 84898---8714302-------4442103354444302458999999999988631222002078899876057267899
Q ss_pred HHHHHHHHHC-CCCEEEEEECCHHH---------HH-CCCEEEEEE
Q ss_conf 9999999826-99279999279024---------44-048899994
Q 000755 1229 LIQQTLRQHF-SDCTVITIAHRITS---------VI-DSDMVLLLS 1263 (1300)
Q Consensus 1229 ~Iq~~i~~~f-~~~TvI~IaHrl~t---------i~-~~D~Vlvl~ 1263 (1300)
.+.+.++... .++|+++++|.... .. .+|.|+.+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 195 (242)
T d1tf7a1 150 ELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR 195 (242)
T ss_dssp HHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEECCEEEEEE
T ss_conf 9999999998639716884210255422246762335362999988
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.43 E-value=0.4 Score=21.27 Aligned_cols=21 Identities=38% Similarity=0.631 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984799995899999731
Q 000755 647 RVAVCGTVGSGKSSLLSCILG 667 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilG 667 (1300)
+++++|..|+|||||++.+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999099999999970
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.42 E-value=0.79 Score=18.97 Aligned_cols=29 Identities=17% Similarity=0.244 Sum_probs=23.8
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 64893999997999859999999951779
Q 000755 1079 FPGGMKTGIVGRTGSGKSTLIQTLFRIVE 1107 (1300)
Q Consensus 1079 i~~GekigIVGrTGsGKSTLl~~L~rl~~ 1107 (1300)
+++...+-+.|+.|+|||+|++++.+-..
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 99887578878998763047788787718
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.42 E-value=0.4 Score=21.27 Aligned_cols=51 Identities=6% Similarity=0.106 Sum_probs=29.0
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHH---HHHHHHHCCCCEEEEEECCCCCC
Q ss_conf 999980599889981677788998999999---99997602995799990598830
Q 000755 752 IARALYQDADIYLFDDPFSAVDAHTGSHLF---KEVLLGLLRSKTVIYVTHQVEFL 804 (1300)
Q Consensus 752 LARAly~~a~IllLDdp~SalD~~t~~~if---~~~i~~~l~~kTvIlvTH~l~~l 804 (1300)
+.+..|++++.+++ .++..|..+-..+- .+.......+..+++|.+..+..
T Consensus 65 ~~~~~~~~~~~~il--v~d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~ 118 (164)
T d1yzqa1 65 LIPSYIRDSAAAVV--VYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLA 118 (164)
T ss_dssp GHHHHHTTCSEEEE--EEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCG
T ss_pred CHHHHHHCCCEEEE--EECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHH
T ss_conf 43888616644999--6065543132666766899998508996499973103404
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.41 E-value=0.39 Score=21.34 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=15.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999859999999951
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFR 1104 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~r 1104 (1300)
||.++|..|+|||||++.+..
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899098999999984
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.40 E-value=0.48 Score=20.64 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999847999958999997312
Q 000755 647 RVAVCGTVGSGKSSLLSCILGE 668 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilGe 668 (1300)
+++++|..|+|||||++.+.+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999859
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=83.30 E-value=0.34 Score=21.86 Aligned_cols=32 Identities=34% Similarity=0.494 Sum_probs=25.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 9999979998599999999517799952699989
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDG 1117 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~rl~~p~~G~I~Idg 1117 (1300)
-+-++|++|+|||||+.+|.+-... +-+.+++
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~~~~--~~~~i~~ 65 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEETQG--NVIVIDN 65 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTTT--CCEEECT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHC--CEEEEEC
T ss_conf 9998897998899999999998651--5489832
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.28 E-value=0.32 Score=22.09 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=20.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998479999589999973126
Q 000755 648 VAVCGTVGSGKSSLLSCILGEV 669 (1300)
Q Consensus 648 vaIvG~~GSGKSTLL~~ilGe~ 669 (1300)
+.+.||+|+||||+++++..++
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998499999999997
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=83.26 E-value=0.44 Score=20.96 Aligned_cols=46 Identities=15% Similarity=0.268 Sum_probs=30.4
Q ss_pred EEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCC
Q ss_conf 1687389399998479999589999973126588637997493899815886
Q 000755 639 NLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPW 690 (1300)
Q Consensus 639 nl~i~~G~~vaIvG~~GSGKSTLL~~ilGe~~~~~G~I~v~g~iayv~Q~pw 690 (1300)
|++-++-..++++||+|+||||-+.-+.-.+.. +| .+++.++-+.+
T Consensus 3 ~~~~~~p~vi~lvGptGvGKTTTiAKLA~~~~~-~g-----~kV~lit~Dt~ 48 (211)
T d2qy9a2 3 NVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQ-QG-----KSVMLAAGDTF 48 (211)
T ss_dssp CCCSCTTEEEEEECCTTSCHHHHHHHHHHHHHT-TT-----CCEEEECCCTT
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH-CC-----CCEEEEECCCC
T ss_conf 778999979999899999989999999999997-79-----94799823213
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.23 E-value=0.5 Score=20.55 Aligned_cols=22 Identities=23% Similarity=0.450 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999847999958999997312
Q 000755 647 RVAVCGTVGSGKSSLLSCILGE 668 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilGe 668 (1300)
+++++|..|+|||||++.+.+.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.06 E-value=0.42 Score=21.09 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=19.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999847999958999997312
Q 000755 646 MRVAVCGTVGSGKSSLLSCILGE 668 (1300)
Q Consensus 646 ~~vaIvG~~GSGKSTLL~~ilGe 668 (1300)
.+++|+|..|+|||||++.+.+.
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 79999998993889999999719
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.04 E-value=0.43 Score=21.07 Aligned_cols=26 Identities=31% Similarity=0.258 Sum_probs=22.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89399999799985999999995177
Q 000755 1081 GGMKTGIVGRTGSGKSTLIQTLFRIV 1106 (1300)
Q Consensus 1081 ~GekigIVGrTGsGKSTLl~~L~rl~ 1106 (1300)
|=-.|+|+|+.++|||||++.|++..
T Consensus 31 ~v~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 31 PMVVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CEEEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 87999988999997999999980998
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=83.04 E-value=0.34 Score=21.80 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999847999958999997312658
Q 000755 647 RVAVCGTVGSGKSSLLSCILGEVPK 671 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilGe~~~ 671 (1300)
-+.+.||.|+||||+.+++.+++..
T Consensus 37 ~~Ll~GPpG~GKTtla~~la~~~~~ 61 (239)
T d1ixsb2 37 HLLLFGPPGLGKTTLAHVIAHELGV 61 (239)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 3898897998788899999998498
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.04 E-value=0.43 Score=21.08 Aligned_cols=23 Identities=30% Similarity=0.280 Sum_probs=20.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999979998599999999517
Q 000755 1083 MKTGIVGRTGSGKSTLIQTLFRI 1105 (1300)
Q Consensus 1083 ekigIVGrTGsGKSTLl~~L~rl 1105 (1300)
-||.++|.+|+|||||+..+..-
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 79999998993889999999719
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=83.00 E-value=0.36 Score=21.62 Aligned_cols=24 Identities=21% Similarity=0.444 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999984799995899999731265
Q 000755 647 RVAVCGTVGSGKSSLLSCILGEVP 670 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilGe~~ 670 (1300)
.++|-||.||||||+.+.|...+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899779998898999999999969
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=82.98 E-value=0.38 Score=21.48 Aligned_cols=28 Identities=25% Similarity=0.279 Sum_probs=24.2
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 7389399998479999589999973126
Q 000755 642 VFHGMRVAVCGTVGSGKSSLLSCILGEV 669 (1300)
Q Consensus 642 i~~G~~vaIvG~~GSGKSTLL~~ilGe~ 669 (1300)
++++..+.+.|+.||||||+.+.|.-.+
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 4678289998999998799999999986
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.90 E-value=0.49 Score=20.57 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=20.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999979998599999999517
Q 000755 1083 MKTGIVGRTGSGKSTLIQTLFRI 1105 (1300)
Q Consensus 1083 ekigIVGrTGsGKSTLl~~L~rl 1105 (1300)
=||.++|..|+|||||++.+.+-
T Consensus 8 iKi~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 8 LKILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 28999998990889999999719
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=82.86 E-value=0.37 Score=21.51 Aligned_cols=28 Identities=21% Similarity=0.200 Sum_probs=24.2
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3893999984799995899999731265
Q 000755 643 FHGMRVAVCGTVGSGKSSLLSCILGEVP 670 (1300)
Q Consensus 643 ~~G~~vaIvG~~GSGKSTLL~~ilGe~~ 670 (1300)
+++..+.++||.|+|||++.+++.+++.
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 9767699989999888999999999859
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=82.75 E-value=0.61 Score=19.83 Aligned_cols=28 Identities=21% Similarity=0.249 Sum_probs=24.3
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9648939999979998599999999517
Q 000755 1078 TFPGGMKTGIVGRTGSGKSTLIQTLFRI 1105 (1300)
Q Consensus 1078 ~i~~GekigIVGrTGsGKSTLl~~L~rl 1105 (1300)
-+++|+.+-|.|++|+|||++..-+.--
T Consensus 30 Gl~~G~l~~i~G~~G~GKT~~~l~~a~~ 57 (258)
T d2i1qa2 30 GLESQSVTEFAGVFGSGKTQIMHQSCVN 57 (258)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 8628859999917999989999999999
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=82.75 E-value=0.39 Score=21.40 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=14.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999847999958999997312
Q 000755 647 RVAVCGTVGSGKSSLLSCILGE 668 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilGe 668 (1300)
-++++|.+++|||||+..|++.
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 9999947898499999999998
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.64 E-value=0.48 Score=20.68 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979998599999999517
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFRI 1105 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~rl 1105 (1300)
|+.++|..|+|||||++.+..-
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.63 E-value=0.45 Score=20.87 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999847999958999997312
Q 000755 647 RVAVCGTVGSGKSSLLSCILGE 668 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilGe 668 (1300)
+++|+|+.|+|||||++.+.+.
T Consensus 8 KivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990989999999619
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.51 E-value=0.85 Score=18.72 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984799995899999731
Q 000755 647 RVAVCGTVGSGKSSLLSCILG 667 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilG 667 (1300)
+++++|..|+|||||++.++.
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999598999999972
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.51 E-value=0.47 Score=20.73 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979998599999999517
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFRI 1105 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~rl 1105 (1300)
||.++|..|+|||||++.+..-
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~~ 25 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCAG 25 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999992989999999739
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=82.47 E-value=0.55 Score=20.21 Aligned_cols=22 Identities=36% Similarity=0.605 Sum_probs=11.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998479999589999973126
Q 000755 648 VAVCGTVGSGKSSLLSCILGEV 669 (1300)
Q Consensus 648 vaIvG~~GSGKSTLL~~ilGe~ 669 (1300)
++|+|.+.+|||||+..|+|..
T Consensus 11 i~iiGhVd~GKSTL~~~L~~~~ 32 (205)
T d2qn6a3 11 IGVVGHVDHGKTTLVQAITGIW 32 (205)
T ss_dssp EEEECSTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCHHHHHHHHHHHH
T ss_conf 9999724886999999997041
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.44 E-value=0.49 Score=20.62 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979998599999999517
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFRI 1105 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~rl 1105 (1300)
||.++|..|+|||||++.+..-
T Consensus 8 KI~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999997999999999849
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=82.43 E-value=0.38 Score=21.48 Aligned_cols=47 Identities=17% Similarity=0.209 Sum_probs=30.8
Q ss_pred CEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCC
Q ss_conf 11687389399998479999589999973126588637997493899815886
Q 000755 638 INLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPW 690 (1300)
Q Consensus 638 inl~i~~G~~vaIvG~~GSGKSTLL~~ilGe~~~~~G~I~v~g~iayv~Q~pw 690 (1300)
+|+.-++...++++||+|+||||-+.-|.-.+. ..| .+++.+.-+.+
T Consensus 4 l~~~~~~p~vi~lvGptGvGKTTTiAKLAa~~~-~~~-----~kV~lit~Dt~ 50 (213)
T d1vmaa2 4 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV-DEG-----KSVVLAAADTF 50 (213)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH-HTT-----CCEEEEEECTT
T ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH-HCC-----CCEEEEEECCC
T ss_conf 767999998999989999988999999999999-779-----90699960133
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.40 E-value=0.53 Score=20.33 Aligned_cols=21 Identities=33% Similarity=0.534 Sum_probs=16.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984799995899999731
Q 000755 647 RVAVCGTVGSGKSSLLSCILG 667 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilG 667 (1300)
+++++|..|+|||||++.+++
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999299999999971
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=82.40 E-value=0.86 Score=18.69 Aligned_cols=33 Identities=27% Similarity=0.339 Sum_probs=25.3
Q ss_pred CEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 1131159964893999997999859999999951
Q 000755 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFR 1104 (1300)
Q Consensus 1071 vL~~is~~i~~GekigIVGrTGsGKSTLl~~L~r 1104 (1300)
.+++-. ---.|.-+.|+|++|+||||+...|..
T Consensus 4 ~lH~~~-v~~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 4 SMHGVL-VDIYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEEEE-EEETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEE-EEECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 289999-999999999980899998999999998
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=82.35 E-value=0.48 Score=20.70 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999979998599999999517799
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFRIVEP 1108 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~rl~~p 1108 (1300)
.+-|.|..||||||+++.|...+.-
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~~ 27 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9999898998989999999999987
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=82.34 E-value=0.46 Score=20.80 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=13.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998479999589999973126
Q 000755 648 VAVCGTVGSGKSSLLSCILGEV 669 (1300)
Q Consensus 648 vaIvG~~GSGKSTLL~~ilGe~ 669 (1300)
++++|+.||||||+.+.+...+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8998899998899999999984
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.28 E-value=0.29 Score=22.39 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=17.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984799995899999731
Q 000755 647 RVAVCGTVGSGKSSLLSCILG 667 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilG 667 (1300)
+++++|..|+|||||++.+++
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999499999999970
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.28 E-value=0.28 Score=22.45 Aligned_cols=22 Identities=23% Similarity=0.489 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999847999958999997312
Q 000755 647 RVAVCGTVGSGKSSLLSCILGE 668 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilGe 668 (1300)
+++++|..|+|||||++.+.+.
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC--
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990889999999849
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=82.27 E-value=0.57 Score=20.11 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=23.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 893999997999859999999951779
Q 000755 1081 GGMKTGIVGRTGSGKSTLIQTLFRIVE 1107 (1300)
Q Consensus 1081 ~GekigIVGrTGsGKSTLl~~L~rl~~ 1107 (1300)
.|..|.|-|.-||||||++..|...++
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 987899989988879999999999999
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=82.22 E-value=0.59 Score=19.99 Aligned_cols=31 Identities=29% Similarity=0.367 Sum_probs=24.1
Q ss_pred EEEEECCCCCCHHHHHHHHH---CCCCCCCCEEE
Q ss_conf 99999799985999999995---17799952699
Q 000755 1084 KTGIVGRTGSGKSTLIQTLF---RIVEPTAGEIV 1114 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~---rl~~p~~G~I~ 1114 (1300)
.|+|-||.||||||+.+.|. ++...++|.++
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~gl~~iStGdLl 38 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIY 38 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEECHHHHH
T ss_conf 8997799988989999999999699089888999
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.20 E-value=0.5 Score=20.50 Aligned_cols=21 Identities=29% Similarity=0.298 Sum_probs=17.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984799995899999731
Q 000755 647 RVAVCGTVGSGKSSLLSCILG 667 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilG 667 (1300)
+++++|..|+|||||++.+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999398999999982
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=82.19 E-value=0.5 Score=20.51 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=20.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999979998599999999517
Q 000755 1083 MKTGIVGRTGSGKSTLIQTLFRI 1105 (1300)
Q Consensus 1083 ekigIVGrTGsGKSTLl~~L~rl 1105 (1300)
=.|||+|+-++|||||+.+|+..
T Consensus 4 ini~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 4 VNVGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHH
T ss_conf 19999947898499999999998
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.14 E-value=0.43 Score=21.00 Aligned_cols=25 Identities=20% Similarity=0.404 Sum_probs=21.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999847999958999997312658
Q 000755 647 RVAVCGTVGSGKSSLLSCILGEVPK 671 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilGe~~~ 671 (1300)
-+.+.||.|+|||++.+++..+...
T Consensus 40 giLL~GppGtGKT~l~~ala~~~~~ 64 (258)
T d1e32a2 40 GILLYGPPGTGKTLIARAVANETGA 64 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCCHHHHHHHHHHHCC
T ss_conf 4687669988830899999987488
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=82.10 E-value=0.58 Score=20.04 Aligned_cols=43 Identities=16% Similarity=0.315 Sum_probs=31.9
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCC
Q ss_conf 8738939999847999958999997312658863799749389981588
Q 000755 641 KVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSP 689 (1300)
Q Consensus 641 ~i~~G~~vaIvG~~GSGKSTLL~~ilGe~~~~~G~I~v~g~iayv~Q~p 689 (1300)
-++.|..+.+.|++|||||+|+.-+........|. +.|+.-+-
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~------~vyIDtE~ 98 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGV------AAFIDAEH 98 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCE------EEEEESSC
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCE------EEEEECCC
T ss_conf 86663369996488748899999999987548988------99998976
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.07 E-value=0.52 Score=20.41 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999859999999951
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFR 1104 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~r 1104 (1300)
||.++|..|+|||||+..+..
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999498999999985
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=82.02 E-value=0.55 Score=20.22 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=17.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799985999999995177
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFRIV 1106 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~rl~ 1106 (1300)
+|-|.|+.||||||+.+.|..-+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999799999999998
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.02 E-value=0.52 Score=20.41 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999859999999951
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFR 1104 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~r 1104 (1300)
||.|+|..|+|||||++.+..
T Consensus 8 KivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999098999999961
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.01 E-value=0.49 Score=20.62 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979998599999999517
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFRI 1105 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~rl 1105 (1300)
||.++|..|+|||||++.+..-
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997996989999999739
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.99 E-value=0.48 Score=20.66 Aligned_cols=21 Identities=33% Similarity=0.656 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999859999999951
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFR 1104 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~r 1104 (1300)
||.++|..|+|||||++.+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999099999999970
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=81.94 E-value=0.8 Score=18.94 Aligned_cols=21 Identities=29% Similarity=0.374 Sum_probs=14.5
Q ss_pred EECCCEEEEECCCCCCHHHHH
Q ss_conf 648939999979998599999
Q 000755 1079 FPGGMKTGIVGRTGSGKSTLI 1099 (1300)
Q Consensus 1079 i~~GekigIVGrTGsGKSTLl 1099 (1300)
+++|+.+-|+++||||||..+
T Consensus 4 l~~~~~~il~~~tGsGKT~~~ 24 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRF 24 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTH
T ss_pred HHCCCCEEEECCCCCCHHHHH
T ss_conf 875996799817998855999
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.88 E-value=0.58 Score=20.02 Aligned_cols=21 Identities=24% Similarity=0.400 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999859999999951
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFR 1104 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~r 1104 (1300)
||.++|..|+|||||++.+..
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999398999999982
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=81.62 E-value=0.41 Score=21.20 Aligned_cols=26 Identities=31% Similarity=0.284 Sum_probs=22.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 39999847999958999997312658
Q 000755 646 MRVAVCGTVGSGKSSLLSCILGEVPK 671 (1300)
Q Consensus 646 ~~vaIvG~~GSGKSTLL~~ilGe~~~ 671 (1300)
.-+.+.||.|||||++.+++..+...
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~~~~ 66 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEESNF 66 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 07998896999889999998620100
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=81.60 E-value=0.89 Score=18.56 Aligned_cols=30 Identities=20% Similarity=0.491 Sum_probs=24.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 939999979998599999999517799952
Q 000755 1082 GMKTGIVGRTGSGKSTLIQTLFRIVEPTAG 1111 (1300)
Q Consensus 1082 GekigIVGrTGsGKSTLl~~L~rl~~p~~G 1111 (1300)
...+-|.|++|.||||+++.+.+.+....+
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~~~~ 72 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKDKTT 72 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 881688898999899999999999754468
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.60 E-value=0.55 Score=20.23 Aligned_cols=21 Identities=33% Similarity=0.613 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999859999999951
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFR 1104 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~r 1104 (1300)
||.+||..|+|||||++.+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899499999999973
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.53 E-value=0.56 Score=20.12 Aligned_cols=23 Identities=35% Similarity=0.661 Sum_probs=20.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999979998599999999517
Q 000755 1083 MKTGIVGRTGSGKSTLIQTLFRI 1105 (1300)
Q Consensus 1083 ekigIVGrTGsGKSTLl~~L~rl 1105 (1300)
=|+.++|..|+|||||++.+..-
T Consensus 6 ~ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 6 LRLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 79999998997899999999719
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=81.49 E-value=0.73 Score=19.25 Aligned_cols=26 Identities=35% Similarity=0.423 Sum_probs=22.7
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 96489399999799985999999995
Q 000755 1078 TFPGGMKTGIVGRTGSGKSTLIQTLF 1103 (1300)
Q Consensus 1078 ~i~~GekigIVGrTGsGKSTLl~~L~ 1103 (1300)
=+++|+.+-|.|++|+||||+..-+.
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 95588799998589898899999999
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=81.46 E-value=0.45 Score=20.89 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=20.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 893999997999859999999951
Q 000755 1081 GGMKTGIVGRTGSGKSTLIQTLFR 1104 (1300)
Q Consensus 1081 ~GekigIVGrTGsGKSTLl~~L~r 1104 (1300)
+.-||.++|..|+|||||++.+.+
T Consensus 16 k~~KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 16 KELRILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CEEEEEEECCCCCCHHHHHHHHHC
T ss_conf 668999999999988999988733
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=81.45 E-value=0.65 Score=19.64 Aligned_cols=70 Identities=11% Similarity=0.171 Sum_probs=36.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC-EE--EEEEC-CCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCHH
Q ss_conf 9999847999958999997312658863799749-38--99815-88688887889984299999999999999825257
Q 000755 647 RVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-TK--AYVAQ-SPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKK 722 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilGe~~~~~G~I~v~g-~i--ayv~Q-~pwi~~gTIreNIlfG~~~d~~~y~~vl~ac~L~~ 722 (1300)
.+.|.|+.||||||+.+.|.-.+ |-..++- .. ..+.+ +++ ..++++.+--|.....+...++++.+....
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~----g~~~i~~~~l~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~ 75 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL----GIPQISTGELFRRNIEEGTKL--GVEAKRYLDAGDLVPSDLTNELVDDRLNNP 75 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH----TCCEEEHHHHHHHHHHTTCHH--HHHHHHHHHHTCCCCHHHHHHHHHHHTTSG
T ss_pred EEEEECCCCCCHHHHHHHHHHHH----CCCEECHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 89998899999799999999998----991672578899877100356--778999998641114689999999876274
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.44 E-value=0.62 Score=19.81 Aligned_cols=28 Identities=29% Similarity=0.431 Sum_probs=24.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8939999979998599999999517799
Q 000755 1081 GGMKTGIVGRTGSGKSTLIQTLFRIVEP 1108 (1300)
Q Consensus 1081 ~GekigIVGrTGsGKSTLl~~L~rl~~p 1108 (1300)
+|.-|.|-|.-||||||++..|....+.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 7689999899888699999999999971
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=81.38 E-value=0.78 Score=19.04 Aligned_cols=22 Identities=41% Similarity=0.656 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999847999958999997312
Q 000755 647 RVAVCGTVGSGKSSLLSCILGE 668 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilGe 668 (1300)
.+.|.|.-|||||||++-++..
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEECCCCCHHHHHHHHHHC
T ss_conf 8998648889999999999856
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.37 E-value=0.71 Score=19.36 Aligned_cols=27 Identities=26% Similarity=0.226 Sum_probs=24.1
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 964893999997999859999999951
Q 000755 1078 TFPGGMKTGIVGRTGSGKSTLIQTLFR 1104 (1300)
Q Consensus 1078 ~i~~GekigIVGrTGsGKSTLl~~L~r 1104 (1300)
-+++|..+-|.|++|+|||++...+..
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 976897999988998878899999999
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.37 E-value=0.36 Score=21.60 Aligned_cols=21 Identities=33% Similarity=0.607 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999859999999951
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFR 1104 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~r 1104 (1300)
||.++|.+|+|||||++.+..
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999088999999984
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=81.33 E-value=0.61 Score=19.85 Aligned_cols=26 Identities=23% Similarity=0.257 Sum_probs=21.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89399999799985999999995177
Q 000755 1081 GGMKTGIVGRTGSGKSTLIQTLFRIV 1106 (1300)
Q Consensus 1081 ~GekigIVGrTGsGKSTLl~~L~rl~ 1106 (1300)
.+..+.|+|+.|+|||||+..+.+-.
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 59879998699982999999999977
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=81.28 E-value=0.45 Score=20.89 Aligned_cols=23 Identities=43% Similarity=0.573 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799985999999995177
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFRIV 1106 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~rl~ 1106 (1300)
+|-++|..||||||+.+.|...+
T Consensus 3 ~IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 48998899998899999999984
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=81.25 E-value=0.59 Score=19.98 Aligned_cols=41 Identities=24% Similarity=0.429 Sum_probs=30.5
Q ss_pred CCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 11168738939999847999958999997312658863799
Q 000755 637 DINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLK 677 (1300)
Q Consensus 637 ~inl~i~~G~~vaIvG~~GSGKSTLL~~ilGe~~~~~G~I~ 677 (1300)
|.-+.+-+|++.+|.|+.|+|||+|+.-+..........+.
T Consensus 60 D~l~pigkGQr~~If~~~g~GKt~l~~~i~~~~~~~~~~v~ 100 (276)
T d2jdid3 60 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYS 100 (276)
T ss_dssp HHHSCEETTCEEEEEECTTSSHHHHHHHHHHHHTTTCSSEE
T ss_pred EEECCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEE
T ss_conf 10256367887776679998989999999998876179969
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=81.19 E-value=0.88 Score=18.61 Aligned_cols=29 Identities=34% Similarity=0.423 Sum_probs=17.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 99999799985999999995177999526
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFRIVEPTAGE 1112 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~rl~~p~~G~ 1112 (1300)
|+.++|..|+|||||++-+.....|+.|-
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~~ 32 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTGI 32 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCSE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCE
T ss_conf 99999999988899999884089797247
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.17 E-value=0.6 Score=19.91 Aligned_cols=26 Identities=23% Similarity=0.508 Sum_probs=21.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 39999847999958999997312658
Q 000755 646 MRVAVCGTVGSGKSSLLSCILGEVPK 671 (1300)
Q Consensus 646 ~~vaIvG~~GSGKSTLL~~ilGe~~~ 671 (1300)
.+++|-|..||||||+++.|.-.+..
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~~ 28 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 19999899888599999999998730
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=81.16 E-value=0.55 Score=20.21 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=19.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999847999958999997312
Q 000755 646 MRVAVCGTVGSGKSSLLSCILGE 668 (1300)
Q Consensus 646 ~~vaIvG~~GSGKSTLL~~ilGe 668 (1300)
..++|+|+.||||||..+.+...
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e~ 24 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMSN 24 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 89999799998899999999986
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=81.11 E-value=0.52 Score=20.37 Aligned_cols=42 Identities=26% Similarity=0.336 Sum_probs=32.9
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCEE
Q ss_conf 96489399999799985999999995177999526-9998964
Q 000755 1078 TFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGE-IVIDGIN 1119 (1300)
Q Consensus 1078 ~i~~GekigIVGrTGsGKSTLl~~L~rl~~p~~G~-I~Idg~d 1119 (1300)
-++.|..+-|.|++|+|||||...+.....-..|. ++||.-.
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~ 92 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 92 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 9667358998057774789999999999870898799986544
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.10 E-value=0.58 Score=20.02 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999847999958999997312
Q 000755 647 RVAVCGTVGSGKSSLLSCILGE 668 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilGe 668 (1300)
+++++|..|+|||||++.+.+.
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998995989999999709
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=80.99 E-value=0.6 Score=19.93 Aligned_cols=22 Identities=36% Similarity=0.462 Sum_probs=19.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 3999997999859999999951
Q 000755 1083 MKTGIVGRTGSGKSTLIQTLFR 1104 (1300)
Q Consensus 1083 ekigIVGrTGsGKSTLl~~L~r 1104 (1300)
-||.++|..|+|||||++.+..
T Consensus 5 ~KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 5 HKVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 6999999899588999999972
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=80.69 E-value=0.57 Score=20.07 Aligned_cols=31 Identities=29% Similarity=0.257 Sum_probs=24.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 9999847999958999997312658863799
Q 000755 647 RVAVCGTVGSGKSSLLSCILGEVPKISGTLK 677 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilGe~~~~~G~I~ 677 (1300)
.+.|=|..||||||+++.+...+....+.+.
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~v~~ 38 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGGSPTLY 38 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCSSCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCEEE
T ss_conf 9999888667899999999998656997699
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=80.61 E-value=0.72 Score=19.29 Aligned_cols=31 Identities=19% Similarity=0.296 Sum_probs=26.8
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9648939999979998599999999517799
Q 000755 1078 TFPGGMKTGIVGRTGSGKSTLIQTLFRIVEP 1108 (1300)
Q Consensus 1078 ~i~~GekigIVGrTGsGKSTLl~~L~rl~~p 1108 (1300)
..++|..|.+.|.=||||||+++.+.+-.-.
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 5799829999668776588999998764223
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.57 E-value=0.5 Score=20.52 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=13.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979998599999999517
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFRI 1105 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~rl 1105 (1300)
+|-|.|+-||||||+...|..-
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899999989999999999
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=80.56 E-value=0.45 Score=20.88 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=21.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 93999984799995899999731265
Q 000755 645 GMRVAVCGTVGSGKSSLLSCILGEVP 670 (1300)
Q Consensus 645 G~~vaIvG~~GSGKSTLL~~ilGe~~ 670 (1300)
.-+++++|+.|+|||||++.+.+...
T Consensus 12 ~~kIvlvG~~~vGKTSli~rl~~~~~ 37 (173)
T d1e0sa_ 12 EMRILMLGLDAAGKTTILYKLKLGQS 37 (173)
T ss_dssp CEEEEEEEETTSSHHHHHHHTTCCCC
T ss_pred EEEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 47999999999878999999844888
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.54 E-value=0.69 Score=19.43 Aligned_cols=22 Identities=41% Similarity=0.611 Sum_probs=19.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 3999997999859999999951
Q 000755 1083 MKTGIVGRTGSGKSTLIQTLFR 1104 (1300)
Q Consensus 1083 ekigIVGrTGsGKSTLl~~L~r 1104 (1300)
=|+.++|..|+|||||++.+..
T Consensus 5 ~Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 5 YKLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 7999999899598999999970
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=80.47 E-value=0.58 Score=20.03 Aligned_cols=21 Identities=19% Similarity=0.385 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984799995899999731
Q 000755 647 RVAVCGTVGSGKSSLLSCILG 667 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilG 667 (1300)
-++|+|.+|||||||..+++-
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~ 28 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILY 28 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHH
T ss_conf 999995898998999999999
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.40 E-value=0.65 Score=19.63 Aligned_cols=21 Identities=29% Similarity=0.408 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984799995899999731
Q 000755 647 RVAVCGTVGSGKSSLLSCILG 667 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilG 667 (1300)
+++++|..|+|||||++.+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999899999999964
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.36 E-value=0.63 Score=19.74 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999847999958999997312
Q 000755 647 RVAVCGTVGSGKSSLLSCILGE 668 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilGe 668 (1300)
+++++|..|+|||||++.+.+.
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999998998999999999709
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| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.31 E-value=0.64 Score=19.67 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=19.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999979998599999999517
Q 000755 1083 MKTGIVGRTGSGKSTLIQTLFRI 1105 (1300)
Q Consensus 1083 ekigIVGrTGsGKSTLl~~L~rl 1105 (1300)
-||.++|.+|+|||||++.+..-
T Consensus 3 ~KivliG~~~vGKTsli~r~~~~ 25 (179)
T d1m7ba_ 3 CKIVVVGDSQCGKTALLHVFAKD 25 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 69999999995989999999729
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| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.29 E-value=0.37 Score=21.59 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999859999999951
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFR 1104 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~r 1104 (1300)
||.++|..|+|||||++.|.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999499999999970
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| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.23 E-value=0.62 Score=19.82 Aligned_cols=22 Identities=27% Similarity=0.373 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999847999958999997312
Q 000755 647 RVAVCGTVGSGKSSLLSCILGE 668 (1300)
Q Consensus 647 ~vaIvG~~GSGKSTLL~~ilGe 668 (1300)
+++++|..|+|||||++.+.+.
T Consensus 5 KvvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999996999999999719
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=80.10 E-value=0.59 Score=19.98 Aligned_cols=175 Identities=16% Similarity=0.245 Sum_probs=86.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC---CCCCCCCEEEECCEECCCCCHHHHHCCCEEECCCCC-CCCCCHHHHC-C-CC-CCC
Q ss_conf 999997999859999999951---779995269998964688897777302188817887-7865478713-8-79-889
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFR---IVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDPT-MFEGTVRNNL-D-PL-EEY 1156 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~r---l~~p~~G~I~Idg~di~~i~l~~lR~~i~iIpQdp~-lF~gTiR~NL-d-p~-~~~ 1156 (1300)
-|||+|..|||||||+.+|+- ... ..|++. +|..+......+....+++-+.--. -+.+. +-|+ | |. .++
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~-~~g~v~-~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~-~~n~iDtPG~~dF 84 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIH-KIGEVH-EGAATMDFMEQERERGITITAAVTTCFWKDH-RINIIDAPGHVDF 84 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSC-C--------------------CCCCCCCSEEEEEETTE-EEEEECCCSSSSC
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCC-CCCCEE-CCCEEEECCHHHHHCCCCCCCCEEEECCCCE-EEEEECCCCHHHH
T ss_conf 999995898998999999999648534-023365-1846985658887518860011234315983-8999527860226
Q ss_pred CHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEE---EECCCCCCCHHHHHHHHHH
Q ss_conf 9999999999839967897210787631236999889469999999998715998899---8578769899999999999
Q 000755 1157 KDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRVLLKKSKVLV---LDEATASVDTATDNLIQQT 1233 (1300)
Q Consensus 1157 sd~ei~~aL~~~~L~~~i~~~~~~Ld~~v~e~g~nlS~GQrQll~LARaLL~~~~ILi---LDEaTa~lD~~Td~~Iq~~ 1233 (1300)
.. +...+|..+...= .|.+.....-.+-++..-.|+.. +-|+|++ ||-+-+..+ .+.+.
T Consensus 85 ~~-e~~~~l~~~D~av-----------lVvda~~Gv~~~T~~~w~~a~~~-~lP~i~fINKmDr~~ad~~-----~~l~e 146 (276)
T d2bv3a2 85 TI-EVERSMRVLDGAI-----------VVFDSSQGVEPQSETVWRQAEKY-KVPRIAFANKMDKTGADLW-----LVIRT 146 (276)
T ss_dssp ST-THHHHHHHCCEEE-----------EEEETTTSSCHHHHHHHHHHHTT-TCCEEEEEECTTSTTCCHH-----HHHHH
T ss_pred HH-HHHHHHHHHHHEE-----------EECCCCCCCCHHHHHHHHHHHHC-CCCEEEEEECCCCCCCCCC-----HHHHH
T ss_conf 99-9999999630057-----------73225677446699999999985-9997999864456543121-----26899
Q ss_pred HHHHCC-CCEEEEEECC----HHHHHC--CCEEEEEEC---CEEEEECCHHHHHHC
Q ss_conf 998269-9279999279----024440--488999949---879786595468721
Q 000755 1234 LRQHFS-DCTVITIAHR----ITSVID--SDMVLLLSH---GIIEEYDSPTKLLEN 1279 (1300)
Q Consensus 1234 i~~~f~-~~TvI~IaHr----l~ti~~--~D~Vlvl~~---G~i~e~g~p~~Ll~~ 1279 (1300)
|++.+. ++..+.+-=. ...+.| ..+.+.-++ ++..+..-|+++.+.
T Consensus 147 i~~~l~~~~vp~~~Pig~~~~f~GvvDl~~~~a~~~~~~~g~~~~~~~ip~~~~~~ 202 (276)
T d2bv3a2 147 MQERLGARPVVMQLPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQ 202 (276)
T ss_dssp HHHTTCCCEEECEEEESCGGGCCEEEETTTTEEEEESSSSSCCEEEECCCGGGHHH
T ss_pred HHHHHCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCCCEECCCCHHHHHH
T ss_conf 99985997178983345787513885056108998558888654002585677777
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.07 E-value=0.65 Score=19.63 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979998599999999517
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFRI 1105 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~rl 1105 (1300)
|+.++|..|+|||||+..+..-
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~~ 29 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKDG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999992999999999719
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| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.06 E-value=0.72 Score=19.31 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979998599999999517
Q 000755 1084 KTGIVGRTGSGKSTLIQTLFRI 1105 (1300)
Q Consensus 1084 kigIVGrTGsGKSTLl~~L~rl 1105 (1300)
||.+||..|+|||||++.+..-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999998998999999999709
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.02 E-value=1 Score=18.10 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99984799995899999731265
Q 000755 648 VAVCGTVGSGKSSLLSCILGEVP 670 (1300)
Q Consensus 648 vaIvG~~GSGKSTLL~~ilGe~~ 670 (1300)
+.+.||.|+||||+++++..++.
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l~ 60 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREIY 60 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99988998775589999999851
|