Citrus Sinensis ID: 000767

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290----
MKLSRRKIKFLQSISLFQVLFILCVVRAERPDARLLATSNSVAGEVKHVEEFCAMYDICGARSDRKVLNCPYNIPSVKPDDLLSSKVQSLCPTITGNVCCTEDQFDTLRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVSKVSNNLTVDGIDYYITDTFGQGLYESCKDVKFGTMNTRALDFIGGGAQNFKDWFAFIGRRAAANLPGSPYTIKFWPSAPELSGMIPMNVSAYSCADGSLGCSCGDCTSSPVCSSTAPPPHKSSSCSVKMGSLNAKCVDFALAILYIILVSLFFGWGFFHRKRERSRSFRMKPLVNAMDGSELHSVERQKEENLPMQMLGTPRTRNRIQLSIVQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATIPDTTHGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMDPKNFDDFGGVEHVKYCFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVKNYNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPSRCMLVERQEERPSVSSL
cccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHccccccccccccccEEEcccccccccccccccccccccccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccccEEEEEEEEcccccEEEEEEEEEcHHHHHHHHcccccccccccccccccccccccccHHHHHHHHccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHEEcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcHHHHcccHHHHHHHHHHHHHHHHHccccEEcccccccccccccHHHHHHHHHHHcccccccEEEEEEEEccccccccccccccHHHHHHHHHHHHHHHccccccccEEEEEEcccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccEEcccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHEEccccEEEHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccEEEEEccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHcccccEEEEEEccccccHHHHHHHHcccccccccHHHHHHHHHHccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccEEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHccccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccEEEEEEEEEEEEEcccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccc
cccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccccccccEEEEccccccccccccccccccccccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccccEEEEEEEEccccccEEEEEEEEEEcHHHHHHHHHHHcccEcccccccHHHHcccccccHHHHHHHHccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccEEEEEEccccEEEEccccHHHHHHHHHHHHccccEEEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHcccccccEEEHHHccccccccccEEHHHHHHHcccHHccccccHHHHHHHHHcccccccccccccccccccEEEEEcccccccccccEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEcHHcHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcHHHHEHEHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEccccccHHHHHHHHHHHHHcccccEEEEEEccccccccccccEEEccccccccHHHHHHHHHHccccccEEccccHHHHHHHHHHHcccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccEEEEEcccccEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHcccEEEcccEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHccccccccc
MKLSRRKIKFLQSISLFQVLFILCVVraerpdarllatSNSVAGEVKHVEEFCAMYdicgarsdrkvlncpynipsvkpddllsskvqslcptitgnvcctedqFDTLRTQVQQAIPFLVGCPACLRNFLNLFCeltcspnqslfiNVTSVskvsnnltvdgidyyitdtfgqglyesckdvkfgtmntraldfigggaqnFKDWFAFIGRraaanlpgspytikfwpsapelsgmipmnvsayscadgslgcscgdctsspvcsstappphkssscsvkmgslnakCVDFALAILYIILVSLFFgwgffhrkrersrsfrmkplvnamdgselhsverqkeenlpmqmlgtprtrnRIQLSIVQGYMSNFYRKYgkwvarnpTLVLSLSMALVLLLCLGLIRfevetrpeklwvgpgsraaeeklffdshlapfyrIEELILatipdtthgnlpsivTESNIKLLFEIQKKIDGlranysgsmisltdicmkplgqdcatQSVLQYFkmdpknfddfggveHVKYCFQHYtstescmsafkgpldpstalggfsgnnysEASAFVVTypvnnavdregnETKKAVAWEKAFVQLAKDEllpmvqsknltlafssESSIEEELKRESTADAITIVISYLVMFAYISltlgdtphlssfyISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQqlelpletRISNALVEVGPSITLASLSEVLAFAVgsfipmpacRVFSMFAALAVLLDFLLQITAFVALIVFDFLRaedkrvdcipclklsssyadsdkgigqrkpGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRiepgleqkivlprdsylQGYFNNisehlrigpplyFVVKNynyssesrqtnqlcsisqcdsNSLLNEIsraslipqssyiakpaaswLDDFLvwispeafgccrkftngsycppddqppccpsgqsscgsagvckdcttcfhhsdllkdrpstiqfkeklpwflnalpsascakgghgaytnsvdlkgyengivqassfrtyhtplnrqiDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHIThafsvssgdkNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPvvlsvfgppsrcmlverqeerpsvssl
mklsrrkikflqsislFQVLFILCVVRAERPDARLLATSNSVAGEVKHVEEFCAMYDICGARSDRKVLNCPYNIPSVKPDDLLSSKVQSLCPTITGNVCCTEDQFDTLRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVSKVSNNLTVDGIDYYITDTFGQGLYESCKDVKFGTMNTRALDFIGGGAQNFKDWFAFIGRRAAANLPGSPYTIKFWPSAPELSGMIPMNVSAYSCADGSLGCSCGDCTSSPVCSSTAPPPHKSSSCSVKMGSLNAKCVDFALAILYIILVSLFFGWGFFHRKRersrsfrmkplvnamdgselhsverqkeenlpmqmlgtprtrnriQLSIVQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATIPDTTHGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMDPKNFDDFGGVEHVKYCFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLklsssyadsdkgiGQRKPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVKNYNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHafsvssgdkNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPSRcmlverqeerpsvssl
MKLSRRKIKFLQSISLFQVLFILCVVRAERPDARLLATSNSVAGEVKHVEEFCAMYDICGARSDRKVLNCPYNIPSVKPDDLLSSKVQSLCPTITGNVCCTEDQFDTLRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVSKVSNNLTVDGIDYYITDTFGQGLYESCKDVKFGTMNTRALDFIGGGAQNFKDWFAFIGRRAAANLPGSPYTIKFWPSAPELSGMIPMNVSAYSCADGSLGCSCGDCTSSPVCSSTAPPPHKSSSCSVKMGSLNAKCVDFALAILYIILVSLFFGWGFFHRKRERSRSFRMKPLVNAMDGSELHSVERQKEENLPMQMLGTPRTRNRIQLSIVQGYMSNFYRKYGKWVARNPTlvlslsmalvlllclglIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATIPDTTHGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMDPKNFDDFGGVEHVKYCFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYIsskvllglsgvvlvmlsvlgsvgFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMfaalavlldfllQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVKNYNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYcppddqppccpsgqsscgsAGVCKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYlalvllgflhglvflpvvlSVFGPPSRCMLVERQEERPSVSSL
*******IKFLQSISLFQVLFILCVVRAERPDARLLATSNSVAGEVKHVEEFCAMYDICGARSDRKVLNCPYNIPSVKPDDLLSSKVQSLCPTITGNVCCTEDQFDTLRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVSKVSNNLTVDGIDYYITDTFGQGLYESCKDVKFGTMNTRALDFIGGGAQNFKDWFAFIGRRAAANLPGSPYTIKFWPSAPELSGMIPMNVSAYSCADGSLGCSCGDCT*********************MGSLNAKCVDFALAILYIILVSLFFGWGFFHR********************************************NRIQLSIVQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATIPDTTHGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMDPKNFDDFGGVEHVKYCFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLTL*****************ADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVKNYNYSS*****NQLCSISQCDSNSLLNEISRASLIPQSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCP**************CGSAGVCKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVS**********ALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPSRCML*************
*********FLQSISLFQVLFILCVVRAERPDARLLATSNSVAGEVKHVEEFCAMYDICGARSDRKVLNCPYNIPSVKPDDLLSSKVQSLCPTITGNVCCTEDQFDTLRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVSKVSNNLTVDGIDYYITDTFGQGLYESCKDVKFGTMNTRALDFIGGGAQNFKDWFAFIGRRAAANLPGSPYTIKFWPSAPELSGMIPMNVSAYSCADGSLGCSCGDCTSSPVCSS*APPPHKSSSCSVKMGSLNAKCVDFALAILYIILVSLFFGWGFFHRKRERSRSFR************************************RIQLSIVQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATIPDTTHGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMDPKNFDDFGGVEHVKYCFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVKNYNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGP*******************
MKLSRRKIKFLQSISLFQVLFILCVVRAERPDARLLATSNSVAGEVKHVEEFCAMYDICGARSDRKVLNCPYNIPSVKPDDLLSSKVQSLCPTITGNVCCTEDQFDTLRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVSKVSNNLTVDGIDYYITDTFGQGLYESCKDVKFGTMNTRALDFIGGGAQNFKDWFAFIGRRAAANLPGSPYTIKFWPSAPELSGMIPMNVSAYSCADGSLGCSCGDCT*******************VKMGSLNAKCVDFALAILYIILVSLFFGWGFFHRKRERSRSFRMKPLVNAMDGSELHSVERQKEENLPMQMLGTPRTRNRIQLSIVQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATIPDTTHGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMDPKNFDDFGGVEHVKYCFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFS***********ESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVKNYNYS*********CSISQCDSNSLLNEISRASLIPQSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQP*************GVCKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPSRCMLVE***********
MKLSRRKIKFLQSISLFQVLFILCVVRAERPDARLLATSNSVAGEVKHVEEFCAMYDICGARSDRKVLNCPYNIPSVKPDDLLSSKVQSLCPTITGNVCCTEDQFDTLRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVSKVSNNLTVDGIDYYITDTFGQGLYESCKDVKFGTMNTRALDFIGGGAQNFKDWFAFIGRRAAANLPGSPYTIKFWPSAPELSGMIPMNVSAYSCADGSLGCSCGDCTSSPVCSSTAPPPHKSSSCSVKMGSLNAKCVDFALAILYIILVSLFFGWGFFHRKRERSR************************************TRNRIQLSIVQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATIPDTTHGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMDPKNFDDFGGVEHVKYCFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSS**********RKPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVKNYNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPSR****************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
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MKLSRRKIKFLQSISLFQVLFILCVVRAERPDARLLATSNSVAGEVKHVEEFCAMYDICGARSDRKVLNCPYNIPSVKPDDLLSSKVQSLCPTITGNVCCTEDQFDTLRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVSKVSNNLTVDGIDYYITDTFGQGLYESCKDVKFGTMNTRALDFIGGGAQNFKDWFAFIGRRAAANLPGSPYTIKFWPSAPELSGMIPMNVSAYSCADGSLGCSCGDCTSSPVCSSTAPPPHKSSSCSVKMGSLNAKCVDFALAILYIILVSLFFGWGFFHRKRERSRSFRMKPLVNAMDGSELHSVERQKEENLPMQMLGTPRTRNRIQLSIVQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATIPDTTHGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMDPKNFDDFGGVEHVKYCFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVKNYNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPSRCMLVERQEERPSVSSL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1294 2.2.26 [Sep-21-2011]
P569411277 Niemann-Pick C1 protein O yes no 0.910 0.922 0.366 0.0
O356041277 Niemann-Pick C1 protein O yes no 0.899 0.911 0.354 0.0
O151181278 Niemann-Pick C1 protein O yes no 0.906 0.917 0.360 0.0
Q6T3U31331 Niemann-Pick C1-like prot no no 0.910 0.885 0.342 1e-174
Q9UHC91359 Niemann-Pick C1-like prot no no 0.910 0.866 0.339 1e-167
Q6T3U41333 Niemann-Pick C1-like prot no no 0.914 0.888 0.333 1e-163
Q122001170 Niemann-Pick type C-relat yes no 0.843 0.932 0.304 1e-151
Q191271383 Niemann-Pick C1 protein h yes no 0.913 0.854 0.246 1e-108
P343891274 Niemann-Pick C1 protein h no no 0.844 0.857 0.262 2e-94
Q61115 1434 Protein patched homolog 1 no no 0.171 0.154 0.344 6e-29
>sp|P56941|NPC1_PIG Niemann-Pick C1 protein OS=Sus scrofa GN=NPC1 PE=2 SV=1 Back     alignment and function desciption
 Score =  758 bits (1958), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 472/1287 (36%), Positives = 712/1287 (55%), Gaps = 109/1287 (8%)

Query: 46   VKHVEEFCAMYDICGARSDRKVLNCPYNIPSVKPDDLLSSKVQSLCPTIT-GNV--CCTE 102
            V+   + C  Y  CG  S  K  NC Y+ P     +     VQ LCP    GNV  CC  
Sbjct: 18   VQVFSQSCVWYGECGIASGDKRYNCRYSGPPKPLPEDGYDLVQELCPGFFFGNVSLCCDV 77

Query: 103  DQFDTLRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTS----VSKVSNNL 158
             Q  TL+  +Q  + FL  CP+C  N +NLFCELTCSP QS F+NVT+    V  V+N  
Sbjct: 78   QQLRTLKDNLQLPLQFLSRCPSCFYNLMNLFCELTCSPRQSQFLNVTATEDYVDPVTNQT 137

Query: 159  --TVDGIDYYITDTFGQGLYESCKDVKFGTMNTRALDFIGG---GAQNFKDWFAFIGRRA 213
               V  ++YY+ +TF   +Y +C+DV+  + N +AL  + G    A N  +W  ++  + 
Sbjct: 138  KTNVKELEYYVGETFANAMYNACRDVEAPSSNEKALGLLCGREAQACNATNWIEYMFNKD 197

Query: 214  AANLPGSPYTIKFWPSAPELSGMIPMNVSAYSC---ADGSLG-CSCGDCTSSPVCSSTAP 269
                  +P+TI    S     GM PMN +   C    D   G CSC DC  S VC     
Sbjct: 198  NGQ---APFTITPIFSDLPTHGMEPMNNATKGCDESVDEVTGPCSCQDC--SIVCGPKPQ 252

Query: 270  PPHKSSSCSVKMGSLNAKCVDFALAILYIILVSLFFGWGFFHRKRERSRSFRMKPLVNAM 329
            PP       +    L    +   +   Y+  + +FFG  FF     R R F  +     +
Sbjct: 253  PPPPPVPWRI----LGLDAMYVIMWSSYMAFLIVFFG-AFFAVWCYRKRYFVSE--YTPI 305

Query: 330  DGSELHSVER-QKEENLPMQMLGTPRTRNRIQLSIVQGYMSNFYRKYGKWVARNPTLVLS 388
            DG+   SV    K +      LG    R           +   + ++G +  R+P  V+ 
Sbjct: 306  DGNIAFSVNSSDKGQAFCCDPLGAAFERG----------LRRLFAQWGAFCVRHPGCVVF 355

Query: 389  LSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATIPD 448
             S+A ++    GL+   V T P  LW  PGS+A  EK +FD+H  PF+R+E+LI+    +
Sbjct: 356  FSLAFIVACSSGLVFIRVTTDPVDLWSAPGSQARREKEYFDTHFGPFFRMEQLIIRATNN 415

Query: 449  TTHGNLP----------SIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPL--- 495
             +H   P            ++   +  + ++Q  I+ + A+Y+   ++L DIC+ PL   
Sbjct: 416  QSHIYHPYPAGADVPFGPPLSRDILHQVLDLQTAIENITASYNNETVTLQDICLAPLSPY 475

Query: 496  GQDCATQSVLQYFKMDPKNFD----DFGGV-----EHVKYCFQHYTS-------TESCMS 539
             ++C   SVL YF+      D    DF  V      H  YC +   S        + C+ 
Sbjct: 476  NKNCTILSVLNYFQNSHSVLDHQVGDFFFVYADYHTHFLYCVRAPASLNDASLLHDPCLG 535

Query: 540  AFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDE 599
             F GP+ P   LGG+   NY+ A+A V+T+PVNN  + +  + ++A AWE  F+   K+ 
Sbjct: 536  TFGGPVFPWLVLGGYDDQNYNNATALVITFPVNNYYN-DTEKLQRAQAWESEFINFVKN- 593

Query: 600  LLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFY 659
                 ++ NLT++F +E SIE+EL RES +D  TI+ISY +MF YIS+ LG     S   
Sbjct: 594  ----YKNPNLTISFMAERSIEDELNRESNSDLFTILISYAIMFLYISIALGHIKSCSRLL 649

Query: 660  ISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAV 719
            + SK+ LG++G+++V+ SV  S+G FS IGV  TLI++EVIPFLVLAVGVDN+ ILV   
Sbjct: 650  VDSKISLGIAGILIVLSSVACSLGIFSYIGVPLTLIVIEVIPFLVLAVGVDNIFILVQTY 709

Query: 720  KR-QQLE-LPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVL 777
            +R ++L+   L+ ++   L EV PS+ L+S SE +AF +G    +PA   FS+FA +AVL
Sbjct: 710  QRDERLQGETLDQQLGRVLGEVAPSMFLSSFSETVAFFLGGLSVVPAVHTFSLFAGMAVL 769

Query: 778  LDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIG-QRKPGLLARYMKE 836
            +DFLLQIT FV+L+  D  R E  R+D + C++       ++ G G Q     L R+ K 
Sbjct: 770  IDFLLQITCFVSLLGLDIKRQEKNRLDVVCCVQ------GAEDGAGVQASESCLFRFFKN 823

Query: 837  VHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHL 896
             +A +L    ++  VI++FV     SIA+  ++E GL+Q + +P DSY+  YF ++S +L
Sbjct: 824  SYAPLLLKDWMRPIVIAVFVGVLSFSIAVLNKVEIGLDQSLSMPDDSYVMDYFQSLSRYL 883

Query: 897  RIGPPLYFVV-KNYNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYIAKPAASW 955
              GPP+YFVV + +NY+S   Q N +C    C+++SL+ +I  A+ +   + I    +SW
Sbjct: 884  HAGPPVYFVVEEGHNYTSLKGQ-NMVCGGLGCNNDSLVQQIFTAAQLDNYTRIGFAPSSW 942

Query: 956  LDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDLL 1015
            +DD+  WI P++  CCR +                S    C ++ V   C  C   +   
Sbjct: 943  IDDYFDWIKPQS-SCCRVYN---------------STDQFCNASVVDPTCIRCRPLTSEG 986

Query: 1016 KDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTPLN 1075
            K RP    F   LP FL+  P+  C KGGH AY+++V++ G  +G V A+ F TYHT L 
Sbjct: 987  KQRPQGEDFMRFLPMFLSDNPNPKCGKGGHAAYSSAVNILGNGSG-VGATYFMTYHTVLQ 1045

Query: 1076 RQIDYVNSMRAAREFSSRVSDSLQME-----IFPYSVFYMYFEQYLDIWRTALINLAIAI 1130
               D++++M+ AR  +S ++ ++ +E     +FPYSVFY+++EQYL +    + NL +++
Sbjct: 1046 ASADFIDAMQKARLIASNITRTMGLEASSYRVFPYSVFYVFYEQYLTVIDDTIFNLGVSL 1105

Query: 1131 GAVFVVCLI-TTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVE 1189
            GA+F+V ++   C  W++ I+ + + MI+V++ GVM +  I LNAVS+VNLVM+ GI+VE
Sbjct: 1106 GAIFLVTVVLMGCELWATVIMCVTIAMILVNMFGVMWLWGISLNAVSLVNLVMSCGISVE 1165

Query: 1190 FCVHITHAFSVSS-GDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYF 1248
            FC HIT AF++S+ G +  R +EAL  MG+SVFSGITLTK  G++VL F+++++F ++YF
Sbjct: 1166 FCSHITRAFTLSTKGSRVDRAEEALAHMGSSVFSGITLTKFGGIVVLAFAKSQIFQIFYF 1225

Query: 1249 QMYLALVLLGFLHGLVFLPVVLSVFGP 1275
            +MYLA+VLLG  HGL+FLPV+LS  GP
Sbjct: 1226 RMYLAIVLLGATHGLIFLPVLLSYIGP 1252
Involved in the intracellular trafficking of cholesterol. May play a role in vesicular trafficking in glia, a process that may be crucial for maintaining the structural and functional integrity of nerve terminals.
Sus scrofa (taxid: 9823)
>sp|O35604|NPC1_MOUSE Niemann-Pick C1 protein OS=Mus musculus GN=Npc1 PE=1 SV=2 Back     alignment and function description
>sp|O15118|NPC1_HUMAN Niemann-Pick C1 protein OS=Homo sapiens GN=NPC1 PE=1 SV=2 Back     alignment and function description
>sp|Q6T3U3|NPCL1_RAT Niemann-Pick C1-like protein 1 OS=Rattus norvegicus GN=Npc1l1 PE=1 SV=1 Back     alignment and function description
>sp|Q9UHC9|NPCL1_HUMAN Niemann-Pick C1-like protein 1 OS=Homo sapiens GN=NPC1L1 PE=1 SV=2 Back     alignment and function description
>sp|Q6T3U4|NPCL1_MOUSE Niemann-Pick C1-like protein 1 OS=Mus musculus GN=Npc1l1 PE=2 SV=1 Back     alignment and function description
>sp|Q12200|NPC1_YEAST Niemann-Pick type C-related protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NCR1 PE=1 SV=1 Back     alignment and function description
>sp|Q19127|NPC1_CAEEL Niemann-Pick C1 protein homolog 1 OS=Caenorhabditis elegans GN=ncr-1 PE=1 SV=2 Back     alignment and function description
>sp|P34389|NPC2_CAEEL Niemann-Pick C1 protein homolog 2 OS=Caenorhabditis elegans GN=ncr-2 PE=3 SV=2 Back     alignment and function description
>sp|Q61115|PTC1_MOUSE Protein patched homolog 1 OS=Mus musculus GN=Ptch1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1294
3594919081309 PREDICTED: niemann-Pick C1 protein-like 0.962 0.951 0.845 0.0
2977455531242 unnamed protein product [Vitis vinifera] 0.956 0.996 0.846 0.0
2240860461274 cholesterol transport protein [Populus t 0.965 0.981 0.809 0.0
2555392301235 hedgehog receptor, putative [Ricinus com 0.950 0.995 0.835 0.0
4494556031244 PREDICTED: niemann-Pick C1 protein-like 0.956 0.995 0.802 0.0
297744484 2090 unnamed protein product [Vitis vinifera] 0.983 0.609 0.765 0.0
3565095901257 PREDICTED: niemann-Pick C1 protein-like 0.965 0.993 0.780 0.0
3565179331283 PREDICTED: niemann-Pick C1 protein-like 0.961 0.969 0.786 0.0
4494852641296 PREDICTED: niemann-Pick C1 protein-like 0.985 0.983 0.765 0.0
3594749671234 PREDICTED: niemann-Pick C1 protein [Viti 0.948 0.995 0.780 0.0
>gi|359491908|ref|XP_002272383.2| PREDICTED: niemann-Pick C1 protein-like [Vitis vinifera] Back     alignment and taxonomy information
 Score = 2197 bits (5694), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1056/1249 (84%), Positives = 1161/1249 (92%), Gaps = 3/1249 (0%)

Query: 47   KHVEEFCAMYDICGARSDRKVLNCPYNIPSVKPDDLLSSKVQSLCPTITGNVCCTEDQFD 106
            +H EE+CAMYDICG RSD KVLNCPY  PSVKPDDLLSSK+QS+CPTI+GNVCCTE QFD
Sbjct: 60   RHSEEYCAMYDICGKRSDGKVLNCPYGSPSVKPDDLLSSKIQSMCPTISGNVCCTEAQFD 119

Query: 107  TLRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVSKVSNNLTVDGIDYY 166
            TLRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVSKV+NNLTVDGI++ 
Sbjct: 120  TLRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVSKVNNNLTVDGIEFI 179

Query: 167  ITDTFGQGLYESCKDVKFGTMNTRALDFIGGGAQNFKDWFAFIGRRAAANLPGSPYTIKF 226
            ITD FG+GLY SCKDVKFGTMNTRA+DFIG GA+ FK+WFAFIG RAA ++PGSPY I F
Sbjct: 180  ITDAFGEGLYNSCKDVKFGTMNTRAIDFIGAGAKTFKEWFAFIGTRAAPSVPGSPYAINF 239

Query: 227  WPSAPELSGMIPMNVSAYSCADGSLGCSCGDCTSSPVCSSTAPPP-HKSSSCSVKMGSLN 285
             PS  E SGM PMNVS YSC D SLGCSCGDC S+ VCS  APP  HK  SCSV++GSL 
Sbjct: 240  QPSIAESSGMKPMNVSTYSCGDNSLGCSCGDCPSASVCSGYAPPSLHKEGSCSVRIGSLK 299

Query: 286  AKCVDFALAILYIILVSLFFGWGFFHRKRERSRSFRMKPLVNAMDGSELHSVERQKEENL 345
            AKC++F+LAILYIILV++FFGWG FHR RER+ + RMKP++N MDGSELHS+ R K+ENL
Sbjct: 300  AKCIEFSLAILYIILVTIFFGWGLFHRTRERNPAPRMKPMLNVMDGSELHSMNRPKDENL 359

Query: 346  PMQML-GTPRTRNRIQLSIVQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLGLIRF 404
              QML   P+ RN +QLSIVQGYMSNFYR+YG WVAR+PT++L  S+A+VL+LCLGLIRF
Sbjct: 360  SSQMLEDVPQIRNGVQLSIVQGYMSNFYRRYGTWVARHPTIMLCSSLAIVLVLCLGLIRF 419

Query: 405  EVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATIPDTTHGNLPSIVTESNIK 464
            +VETRPEKLWVGPGS+AAEEK FFDSHLAPFYRIE+L+LATIPD  +G  PSIVTE+NIK
Sbjct: 420  KVETRPEKLWVGPGSKAAEEKQFFDSHLAPFYRIEQLVLATIPDA-NGISPSIVTENNIK 478

Query: 465  LLFEIQKKIDGLRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMDPKNFDDFGGVEHV 524
            LLFEIQKK+DGLRAN+SGSMISLTDICMKPLGQDCATQSVLQYFKMD +N+DD+GGV+HV
Sbjct: 479  LLFEIQKKVDGLRANFSGSMISLTDICMKPLGQDCATQSVLQYFKMDSRNYDDYGGVQHV 538

Query: 525  KYCFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKK 584
            +YCFQHYTS ++CMSAFK PLDPSTALGGFSGNNYSEASAF+VTYPVNNA+D+EGNET K
Sbjct: 539  EYCFQHYTSADTCMSAFKAPLDPSTALGGFSGNNYSEASAFIVTYPVNNAIDKEGNETGK 598

Query: 585  AVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAY 644
            AVAWEKAF+Q+ KD+LLPM+QSKNLTL+FSSESSIEEELKRESTADAITI ISYLVMFAY
Sbjct: 599  AVAWEKAFIQIVKDDLLPMMQSKNLTLSFSSESSIEEELKRESTADAITISISYLVMFAY 658

Query: 645  ISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLV 704
            ISLTLGDTP LSSFYISSK+ LGL+GV+LVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLV
Sbjct: 659  ISLTLGDTPRLSSFYISSKIFLGLAGVMLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLV 718

Query: 705  LAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPA 764
            LAVGVDNMCILVHAVKRQ LELPLE RISNALVEVGPSITLASL+EVLAFAVG+FIPMPA
Sbjct: 719  LAVGVDNMCILVHAVKRQPLELPLEGRISNALVEVGPSITLASLAEVLAFAVGTFIPMPA 778

Query: 765  CRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQ 824
            CRVFSMFAALAVLLDFLLQ+TAFVALIVFDFLRAED+R+DC PC+K+SSSYADSDKGIGQ
Sbjct: 779  CRVFSMFAALAVLLDFLLQVTAFVALIVFDFLRAEDRRIDCFPCIKISSSYADSDKGIGQ 838

Query: 825  RKPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSY 884
            RKPGLLARYMKEVHA ILSLWGVK+ VIS+FVAF LASIALCTRIEPGLEQKIVLPRDSY
Sbjct: 839  RKPGLLARYMKEVHAPILSLWGVKLVVISVFVAFALASIALCTRIEPGLEQKIVLPRDSY 898

Query: 885  LQGYFNNISEHLRIGPPLYFVVKNYNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQ 944
            LQGYFNN+SE+LRIGPPLYFVVKNYNYSSESR TNQLCSISQC+S+SLLNEI+RASLIP+
Sbjct: 899  LQGYFNNVSEYLRIGPPLYFVVKNYNYSSESRHTNQLCSISQCNSDSLLNEIARASLIPE 958

Query: 945  SSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKD 1004
            SSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPP+DQPPCC S   SC   G+CKD
Sbjct: 959  SSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPNDQPPCCASEDGSCYLNGLCKD 1018

Query: 1005 CTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQA 1064
            CTTCF HSDL  DRPST QF+EKLPWFL ALPSA C+KGGHGAYT+SV+LKG+E+GI+QA
Sbjct: 1019 CTTCFRHSDLYNDRPSTAQFREKLPWFLAALPSADCSKGGHGAYTSSVELKGFESGIIQA 1078

Query: 1065 SSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALI 1124
            SSFRTYHTPLN+QIDYVNSMRAAREF+SRVSDSL+++IFPYSVFYM+FEQYLDIWRTALI
Sbjct: 1079 SSFRTYHTPLNKQIDYVNSMRAAREFTSRVSDSLKIQIFPYSVFYMFFEQYLDIWRTALI 1138

Query: 1125 NLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAV 1184
            NLAIAIGAVF+VCL+ TCS WSSAIILLVL MIVVDLMGVMAIL IQLNA+SVVNLVMAV
Sbjct: 1139 NLAIAIGAVFIVCLVITCSLWSSAIILLVLAMIVVDLMGVMAILNIQLNALSVVNLVMAV 1198

Query: 1185 GIAVEFCVHITHAFSVSSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFV 1244
            GIAVEFCVHITHAFSVSSGD+NQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFV
Sbjct: 1199 GIAVEFCVHITHAFSVSSGDRNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFV 1258

Query: 1245 VYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPSRCMLVERQEERPSVSS 1293
            VYYFQMYLALVLLGFLHGLVFLPVVLS+ GPPSRC+L++++E++PS SS
Sbjct: 1259 VYYFQMYLALVLLGFLHGLVFLPVVLSMCGPPSRCVLIDKREDQPSPSS 1307

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297745553|emb|CBI40718.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224086046|ref|XP_002307793.1| cholesterol transport protein [Populus trichocarpa] gi|222857242|gb|EEE94789.1| cholesterol transport protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255539230|ref|XP_002510680.1| hedgehog receptor, putative [Ricinus communis] gi|223551381|gb|EEF52867.1| hedgehog receptor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449455603|ref|XP_004145542.1| PREDICTED: niemann-Pick C1 protein-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297744484|emb|CBI37746.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356509590|ref|XP_003523530.1| PREDICTED: niemann-Pick C1 protein-like [Glycine max] Back     alignment and taxonomy information
>gi|356517933|ref|XP_003527640.1| PREDICTED: niemann-Pick C1 protein-like [Glycine max] Back     alignment and taxonomy information
>gi|449485264|ref|XP_004157117.1| PREDICTED: niemann-Pick C1 protein-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359474967|ref|XP_002279611.2| PREDICTED: niemann-Pick C1 protein [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1294
TAIR|locus:20358781272 AT1G42470 [Arabidopsis thalian 0.890 0.905 0.721 0.0
ASPGD|ASPL00000510851271 AN2119 [Emericella nidulans (t 0.702 0.715 0.331 2.6e-171
ZFIN|ZDB-GENE-030131-31611276 npc1 "Niemann-Pick disease, ty 0.883 0.895 0.340 3.4e-171
CGD|CAL00038731256 NCR1 [Candida albicans (taxid: 0.633 0.652 0.302 5.1e-169
UNIPROTKB|G4NE971275 MGG_00819 "Niemann-Pick C1 pro 0.705 0.716 0.313 6.4e-166
UNIPROTKB|P569411277 NPC1 "Niemann-Pick C1 protein" 0.891 0.902 0.337 2.7e-164
UNIPROTKB|F1SBB51277 NPC1 "Niemann-Pick C1 protein" 0.891 0.902 0.336 1.9e-163
UNIPROTKB|G3V7K51278 Cdig2 "RCG41239" [Rattus norve 0.884 0.895 0.331 1.7e-162
UNIPROTKB|Q9TT751286 NPC1 "Niemann-Pick type C1 dis 0.884 0.889 0.340 4.5e-162
UNIPROTKB|Q9JLG31277 NPC1 "Niemann-Pick type C1 pro 0.884 0.895 0.335 3.1e-161
TAIR|locus:2035878 AT1G42470 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 4376 (1545.5 bits), Expect = 0., P = 0.
 Identities = 836/1158 (72%), Positives = 955/1158 (82%)

Query:    45 EVKHVEEFCAMYDICGARSDRKVLNCPYNIPSVKPDDLLSSKVQSLCPTITGNVCCTEDQ 104
             E K    +CAMYDICGARSD KVLNCP+NIPSVKPDDLLSSK+QSLCPTITGNVCCTE Q
Sbjct:    11 EAKQSAGYCAMYDICGARSDGKVLNCPFNIPSVKPDDLLSSKIQSLCPTITGNVCCTETQ 70

Query:   105 FDTLRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVSKVSNNLTVDGID 164
             FDTLR+QVQQAIPF+VGCPACLRNFLNLFCELTCSP+QSLFINVTS +KV NN TVDGI 
Sbjct:    71 FDTLRSQVQQAIPFIVGCPACLRNFLNLFCELTCSPDQSLFINVTSTTKVKNNSTVDGIQ 130

Query:   165 YYITDTFGQGLYESCKDVKFGTMNTRALDFIGGGAQNFKDWFAFIGRRAAANLPGSPYTI 224
             YYITD FG G+YESCK+VKFG+ N+RALDF+G GA+NFK+WF FIG++A  NLPGSPY I
Sbjct:   131 YYITDDFGAGMYESCKNVKFGSSNSRALDFLGAGAKNFKEWFTFIGQKAGVNLPGSPYGI 190

Query:   225 KFWPSAPELSGMIPMNVSAYSCADGSLGCSCGDCTSSPVCSSTAP-PPHKSSSCSVKMGS 283
              F P+ P  SGM PMNVS YSC D SLGCSCGDC S+  CSS A  P  K  SCS+K+GS
Sbjct:   191 AFLPTPPVSSGMRPMNVSIYSCGDESLGCSCGDCPSAATCSSKAEVPTQKKHSCSIKIGS 250

Query:   284 LNAKCVDFALAILYIILVSLFFGWGFFHRKRERSRSFRMKPLVNAMDGSELHSVERQKEE 343
             L  KCVDF LAILYI+LVSLF G G  H  R + ++ +M  L  A    E +SV +QK +
Sbjct:   251 LEVKCVDFILAILYIVLVSLFLGGGLLHPVRGKKKTSQMGTLSEA--SGERNSVNQQKPD 308

Query:   344 NLPMQML-GTPRTRNRIQLSIVQGYMSNFYRKYGKWVARNPTXXXXXXXXXXXXXXXXXI 402
              +  QML  TP+ RN  QLS VQG+++NFY KYG WVAR+PT                 I
Sbjct:   309 TIQSQMLQNTPQ-RNWGQLSTVQGHLANFYGKYGIWVARHPTLVLCLSVSVVLLLCVGLI 367

Query:   403 RFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATIPDTTHGNLPSIVTESN 462
             RF+VETRP+KLWVG GSRAAEEK FFD+HLAPFYRIE+LI+AT+  ++H   P I+T+ N
Sbjct:   368 RFKVETRPDKLWVGSGSRAAEEKQFFDTHLAPFYRIEQLIIATVQTSSHEKAPEILTDDN 427

Query:   463 IKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQDCATQSVLQ-YFKMDPKNFDDFGGV 521
             IKLLF+IQKK+DGLRAN+SGSM+SLTDICMKPLG+DCATQSVLQ YFKM P+N+DD+GGV
Sbjct:   428 IKLLFDIQKKVDGLRANHSGSMVSLTDICMKPLGEDCATQSVLQQYFKMKPENYDDYGGV 487

Query:   522 EHVKYCFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNE 581
             +HVKYCF+H+TSTESC+SAFKGPLDP+TALGGFSGN++SEASAF+VTYPV+N VD +GN+
Sbjct:   488 DHVKYCFEHFTSTESCLSAFKGPLDPTTALGGFSGNSFSEASAFLVTYPVDNFVDNKGNK 547

Query:   582 TKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVM 641
             T+KAVAWEKAF+QLAKDELLPMVQ+KNLTL+FSSESSIEEELKRESTAD ITI ISYLVM
Sbjct:   548 TEKAVAWEKAFIQLAKDELLPMVQAKNLTLSFSSESSIEEELKRESTADVITIAISYLVM 607

Query:   642 FAYISLTLGDTPHLSSFYIXXXXXXXXXXXXXXXXXXXXXXXFFSAIGVKSTLIIMEVIP 701
             FAYISLTLGD+P L SFYI                       FFSA+G+KSTLIIMEVIP
Sbjct:   608 FAYISLTLGDSPRLKSFYITSKVLLGLSGVLLVMLSVLGSVGFFSAVGMKSTLIIMEVIP 667

Query:   702 FLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIP 761
             FLVLAVGVDNMCILVHAVKRQ+ ELPLE RISNAL+EVGPSITLASL+E+LAFAVG+FI 
Sbjct:   668 FLVLAVGVDNMCILVHAVKRQEQELPLERRISNALMEVGPSITLASLAEILAFAVGAFIK 727

Query:   762 MPACRVFSMXXXXXXXXXXXXQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKG 821
             MPA RVFSM            QITAFVALIVFDF R EDKRVDC PC+K S S   ++KG
Sbjct:   728 MPAVRVFSMFAALAVLLDFLLQITAFVALIVFDFRRTEDKRVDCFPCIKTSKSSISAEKG 787

Query:   822 IGQRKPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPR 881
             +GQRK GLL RYMKEVHA +LS W VKI VI+ F    +A IAL TRIEPGLEQ+IVLP+
Sbjct:   788 VGQRKAGLLTRYMKEVHAPVLSHWIVKIVVIAFFFGLAMAGIALSTRIEPGLEQQIVLPQ 847

Query:   882 DSYLQGYFNNISEHLRIGPPLYFVVKNYNYSSESRQTNQLCSISQCDSNSLLNEISRASL 941
             DSYLQGYFNNIS +LRIGPPLYFV+KNYNYSSESR TNQLCSI++C+ NSLLNEI+RASL
Sbjct:   848 DSYLQGYFNNISTYLRIGPPLYFVLKNYNYSSESRHTNQLCSINKCNPNSLLNEIARASL 907

Query:   942 IPQSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYXXXXXXXXXXXXXXXXXXXAGV 1001
              P+ SYIAKPAASWLDDFLVW+SPEAFGCCRKFTNG++                   + V
Sbjct:   908 TPELSYIAKPAASWLDDFLVWLSPEAFGCCRKFTNGTFCPPDDQPPCCPPGQTSCGLSEV 967

Query:  1002 CKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGI 1061
             CKDCTTCF H+DL  DRPST QFKEKLPWFLNALPSA CAKGGHGAY++SVDL+GY NGI
Sbjct:   968 CKDCTTCFRHADLSSDRPSTTQFKEKLPWFLNALPSADCAKGGHGAYSSSVDLQGYANGI 1027

Query:  1062 VQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRT 1121
             +QASSFRTYHTPLN+Q+D+VNSMRAA+EFS++VS SL+MEI+PYSVFYM+FEQYLDIW+T
Sbjct:  1028 IQASSFRTYHTPLNKQVDFVNSMRAAQEFSAKVSRSLKMEIYPYSVFYMFFEQYLDIWKT 1087

Query:  1122 ALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLV 1181
             ALINL+IAI AVFVVCLI TCSFWSSAIILLV+ MI++DL+GVMA+  IQLNA+SVVNL+
Sbjct:  1088 ALINLSIAIAAVFVVCLIITCSFWSSAIILLVIAMIIIDLLGVMAVFHIQLNALSVVNLI 1147

Query:  1182 MAVGIAVEFCVHITHAFS 1199
             M+VGIAVEFCVHITHAFS
Sbjct:  1148 MSVGIAVEFCVHITHAFS 1165
GO:0008158 "hedgehog receptor activity" evidence=IEA;ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0016021 "integral to membrane" evidence=IEA
GO:0005886 "plasma membrane" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
ASPGD|ASPL0000051085 AN2119 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-3161 npc1 "Niemann-Pick disease, type C1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
CGD|CAL0003873 NCR1 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|G4NE97 MGG_00819 "Niemann-Pick C1 protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
UNIPROTKB|P56941 NPC1 "Niemann-Pick C1 protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1SBB5 NPC1 "Niemann-Pick C1 protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|G3V7K5 Cdig2 "RCG41239" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q9TT75 NPC1 "Niemann-Pick type C1 disease protein" [Oryctolagus cuniculus (taxid:9986)] Back     alignment and assigned GO terms
UNIPROTKB|Q9JLG3 NPC1 "Niemann-Pick type C1 protein" [Cricetulus griseus (taxid:10029)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q12200NPC1_YEASTNo assigned EC number0.30430.84310.9324yesno
O15118NPC1_HUMANNo assigned EC number0.36010.90640.9178yesno
O35604NPC1_MOUSENo assigned EC number0.35430.89950.9115yesno
P56941NPC1_PIGNo assigned EC number0.36670.91030.9224yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00002883001
SubName- Full=Chromosome chr18 scaffold_137, whole genome shotgun sequence; (1263 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1294
TIGR009171204 TIGR00917, 2A060601, Niemann-Pick C type protein f 0.0
pfam12349153 pfam12349, Sterol-sensing, Sterol-sensing domain o 9e-59
pfam02460801 pfam02460, Patched, Patched family 3e-48
TIGR009181145 TIGR00918, 2A060602, The Eukaryotic (Putative) Ste 5e-35
TIGR009181145 TIGR00918, 2A060602, The Eukaryotic (Putative) Ste 4e-33
pfam02460801 pfam02460, Patched, Patched family 6e-24
COG1033727 COG1033, COG1033, Predicted exporters of the RND s 4e-10
COG1033 727 COG1033, COG1033, Predicted exporters of the RND s 4e-07
COG1033727 COG1033, COG1033, Predicted exporters of the RND s 5e-07
TIGR00921719 TIGR00921, 2A067, The (Largely Archaeal Putative) 7e-06
TIGR00921 719 TIGR00921, 2A067, The (Largely Archaeal Putative) 1e-05
TIGR03480 862 TIGR03480, HpnN, hopanoid biosynthesis associated 3e-05
COG1033727 COG1033, COG1033, Predicted exporters of the RND s 8e-05
pfam03176332 pfam03176, MMPL, MMPL family 1e-04
TIGR00833 910 TIGR00833, actII, Transport protein 2e-04
pfam12349153 pfam12349, Sterol-sensing, Sterol-sensing domain o 0.001
TIGR00920 889 TIGR00920, 2A060605, 3-hydroxy-3-methylglutaryl-co 0.001
TIGR00921719 TIGR00921, 2A067, The (Largely Archaeal Putative) 0.002
>gnl|CDD|233184 TIGR00917, 2A060601, Niemann-Pick C type protein family Back     alignment and domain information 
 Score = 1477 bits (3825), Expect = 0.0
 Identities = 707/1249 (56%), Positives = 882/1249 (70%), Gaps = 72/1249 (5%)

Query: 53   CAMYDICGARSDRKVLNCPYNIPSVKPDDLLSSKVQSLC----PTITGNVCCTEDQFDTL 108
            C  Y ICGARSD KVLNCPYN PS KP D  SS +QSLC    P I+GNVCCTE QFDTL
Sbjct: 1    CVWYGICGARSDGKVLNCPYNGPSKKPPDDGSSLIQSLCGFSHPNISGNVCCTETQFDTL 60

Query: 109  RTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVSKVSNNLTVDGIDYYIT 168
            R+ VQ AIPFLV CPACLRN LNLFCELTCSP+QSLF+NVTS +KV  N TVD + YYIT
Sbjct: 61   RSNVQLAIPFLVRCPACLRNLLNLFCELTCSPDQSLFMNVTSTTKVKTNSTVDSVQYYIT 120

Query: 169  DTFGQGLYESCKDVKFGTMNTRALDFIGGGAQNFKDWFAFIGRRAAANLPGSPYTIKFWP 228
            D F  G+Y SC +VKF + N+RALDF+ GGA NF +W  +IG+ A  N PG+P+ I F P
Sbjct: 121  DDFANGMYNSCSNVKFPSSNSRALDFLCGGAANFCNWTNWIGQMAGVNNPGAPFGITFLP 180

Query: 229  S-APELSGMIPMNVSAYSCADGSLGCSCGDCTSSPVCSSTA-PPPHKSSSCSVKMGSLNA 286
            +  P  SGM PMNVS YSC D  LGCSCG   S   CS  A PP     SCS+ +G    
Sbjct: 181  TPCPVSSGMRPMNVSTYSCGDAVLGCSCGCSCSDCDCSCKAKPPTPPKPSCSIILG---V 237

Query: 287  KCVDFALAILYIILVSLFFGWGFFHRKRERSRSFRMKPLVNAMDGSELHSVERQKEENLP 346
               D  +AILYI+LV +F G G     R + ++  M  L  A    E++S   Q ++N P
Sbjct: 238  DAYDVIMAILYIVLVLVFLGGGLLFPVRGKKKTSFMGTLSEA--SGEINSSNNQSDQNTP 295

Query: 347  MQMLGTPRTRNRIQLSIVQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEV 406
                     RN  QL+ V+G+++ F+ KYG WVARNP LVL LS+++VLLL +GLI FEV
Sbjct: 296  --------QRNEGQLATVEGHLARFFTKYGIWVARNPGLVLCLSVSVVLLLGVGLIFFEV 347

Query: 407  ETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATIPDTTHGNLPSIVTESNIKLL 466
            ET P KLWV PGSRAA EK FFD+H  PFYRIE+LI+A +  + H   P ++ + N+KLL
Sbjct: 348  ETDPVKLWVAPGSRAALEKEFFDTHFGPFYRIEQLIIAAVQTSQHEKFPPVLDDDNLKLL 407

Query: 467  FEIQKKIDGLRANYSGSMISLTDICMKPLGQD-CATQSVLQYF-----KMDPKNFDDFGG 520
            F+IQKKI  L AN    +I+L DIC  PL    C   S   YF     K+DP+N+DD  G
Sbjct: 408  FDIQKKISQLFAN----LITLDDICFAPLSPYNCFIYSTCGYFQNMYSKLDPENYDDGFG 463

Query: 521  VEHVKYCFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGN 580
            V++VKYCF+ +TS ESC+SAF GP+DP+TALGGFSGNN+SEASAFVVT+PVNN    + +
Sbjct: 464  VDYVKYCFECFTSPESCLSAFGGPVDPTTALGGFSGNNFSEASAFVVTFPVNN-FVNKTD 522

Query: 581  ETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLV 640
            + +KAVAWEKAF+Q AK+ LLP VQ+K L ++FSSE SIE+ELKRESTAD ITI++SYLV
Sbjct: 523  KLEKAVAWEKAFIQFAKNYLLPNVQAK-LDISFSSERSIEDELKRESTADVITILVSYLV 581

Query: 641  MFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVI 700
            MFAYISL+LG +    S +I SKVLLG+SGV++V+ SV+GSVG FS IG+K+TLIIMEVI
Sbjct: 582  MFAYISLSLGHSKRFKSLFIDSKVLLGISGVLIVLASVVGSVGVFSYIGLKATLIIMEVI 641

Query: 701  PFLVLAVGVDNMCILVHAVKRQQ-----------LELPLETRISNALVEVGPSITLASLS 749
            PFLVLAVGVDN+ ILV   +R +            EL LE ++  AL EVGPSITLASLS
Sbjct: 642  PFLVLAVGVDNIFILVQTYQRLERFYREVGVDNEQELTLEQQLGRALGEVGPSITLASLS 701

Query: 750  EVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCL 809
            E LAF +G+   MPA R FS+FA LAV +DFLLQITAFVAL+V DF R ED RVDC PC+
Sbjct: 702  ESLAFFLGALSKMPAVRAFSLFAGLAVFIDFLLQITAFVALLVLDFKRTEDNRVDCFPCI 761

Query: 810  KLSSSYADSDKGIGQRKPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRI 869
            K S S   ++KG GQRK GLL R+ KEV+A  L  W VKI VI+ F    +  IAL TRI
Sbjct: 762  KGSKSSISAEKGSGQRKEGLLTRFFKEVYAPFLLHWIVKIVVIAFFFGLLMFGIALATRI 821

Query: 870  EPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVK-NYNYSSESRQTNQLCSISQCD 928
            + GL+Q++ LP+DSYLQ YF +++  L +GPP+YFV+K +YNY+    Q N++C+   C+
Sbjct: 822  DIGLDQQLALPQDSYLQIYFASLTPLLEVGPPVYFVLKGDYNYTDSESQ-NKVCTGGGCN 880

Query: 929  SNSLLNEISRASLIPQSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCP-PDDQPP 987
             +S++N  +        +YIAKPA+SWLDD+  W SP++  CCRKFTNG++C  PD    
Sbjct: 881  KDSIVNVFNNL------TYIAKPASSWLDDYFDWASPQSSCCCRKFTNGTFCNGPDPS-- 932

Query: 988  CCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGA 1047
                             C  C   S   + RPST QFKE LP+FLN  PSA CAKGGH A
Sbjct: 933  -----------------CFRCADLSSNAQGRPSTTQFKEYLPFFLNDNPSADCAKGGHAA 975

Query: 1048 YTNSVDLKGYENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSV 1107
            Y+++VDL+G+ N I+QAS F TYHTPLN Q D++N++RAARE S+ V+ SL+ME+FPYSV
Sbjct: 976  YSSAVDLQGHANTIIQASYFMTYHTPLNTQADFINALRAAREISANVTRSLKMEVFPYSV 1035

Query: 1108 FYMYFEQYLDIWRTALINLAIAIGAVFVVCLI-TTCSFWSSAIILLVLTMIVVDLMGVMA 1166
            FY++FEQYL IW  ALINL I++GA+F+V L+    +  S+  +++ + MIVV+L+G+M 
Sbjct: 1036 FYVFFEQYLTIWSDALINLGISLGAIFIVTLVLLGLNALSAVNVVISVGMIVVNLVGIMH 1095

Query: 1167 ILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVS-SGDKNQRMKEALGTMGASVFSGIT 1225
            +  I LNAVSVVNLVMA GI++EFC HI   FS S    +N R KEALG MG+SVFSGIT
Sbjct: 1096 LWNISLNAVSVVNLVMAKGISIEFCSHINAQFSTSKHFSRNHRAKEALGGMGSSVFSGIT 1155

Query: 1226 LTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFG 1274
            LTKLVGV+VL FS++E+F VYYF+MYLA+VLLG LHGLVFLPV+LS  G
Sbjct: 1156 LTKLVGVVVLGFSKSEIFQVYYFRMYLAIVLLGALHGLVFLPVLLSYIG 1204

The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis [Transport and binding proteins, Other]. Length = 1204
>gnl|CDD|192997 pfam12349, Sterol-sensing, Sterol-sensing domain of SREBP cleavage-activation Back     alignment and domain information
>gnl|CDD|217050 pfam02460, Patched, Patched family Back     alignment and domain information
>gnl|CDD|233185 TIGR00918, 2A060602, The Eukaryotic (Putative) Sterol Transporter (EST) Family Back     alignment and domain information
>gnl|CDD|233185 TIGR00918, 2A060602, The Eukaryotic (Putative) Sterol Transporter (EST) Family Back     alignment and domain information
>gnl|CDD|217050 pfam02460, Patched, Patched family Back     alignment and domain information
>gnl|CDD|223964 COG1033, COG1033, Predicted exporters of the RND superfamily [General function prediction only] Back     alignment and domain information
>gnl|CDD|223964 COG1033, COG1033, Predicted exporters of the RND superfamily [General function prediction only] Back     alignment and domain information
>gnl|CDD|223964 COG1033, COG1033, Predicted exporters of the RND superfamily [General function prediction only] Back     alignment and domain information
>gnl|CDD|233187 TIGR00921, 2A067, The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family Back     alignment and domain information
>gnl|CDD|233187 TIGR00921, 2A067, The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family Back     alignment and domain information
>gnl|CDD|234225 TIGR03480, HpnN, hopanoid biosynthesis associated RND transporter like protein HpnN Back     alignment and domain information
>gnl|CDD|223964 COG1033, COG1033, Predicted exporters of the RND superfamily [General function prediction only] Back     alignment and domain information
>gnl|CDD|217407 pfam03176, MMPL, MMPL family Back     alignment and domain information
>gnl|CDD|129913 TIGR00833, actII, Transport protein Back     alignment and domain information
>gnl|CDD|192997 pfam12349, Sterol-sensing, Sterol-sensing domain of SREBP cleavage-activation Back     alignment and domain information
>gnl|CDD|233186 TIGR00920, 2A060605, 3-hydroxy-3-methylglutaryl-coenzyme A reductase Back     alignment and domain information
>gnl|CDD|233187 TIGR00921, 2A067, The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1294
TIGR009171204 2A060601 Niemann-Pick C type protein family. The m 100.0
KOG19331201 consensus Cholesterol transport protein (Niemann-P 100.0
TIGR009181145 2A060602 The Eukaryotic (Putative) Sterol Transpor 100.0
PF02460798 Patched: Patched family; InterPro: IPR003392 The t 100.0
KOG1934868 consensus Predicted membrane protein (patched supe 100.0
KOG19351143 consensus Membrane protein Patched/PTCH [Signal tr 100.0
COG1033727 Predicted exporters of the RND superfamily [Genera 100.0
TIGR00921719 2A067 The (Largely Archaeal Putative) Hydrophobe/A 100.0
TIGR00833910 actII Transport protein. Characterized members of 100.0
TIGR03480862 HpnN hopanoid biosynthesis associated RND transpor 100.0
TIGR009151044 2A0602 The (Largely Gram-negative Bacterial) Hydro 99.98
PRK106141025 multidrug efflux system subunit MdtC; Provisional 99.98
PRK105031040 multidrug efflux system subunit MdtB; Provisional 99.97
PRK095791017 multidrug efflux protein; Reviewed 99.97
PRK095771032 multidrug efflux protein; Reviewed 99.97
PRK105551037 aminoglycoside/multidrug efflux system; Provisiona 99.97
TIGR009141051 2A0601 heavy metal efflux pump (cobalt-zinc-cadmiu 99.97
PRK151271049 multidrug efflux system protein AcrB; Provisional 99.97
COG08411009 AcrB Cation/multidrug efflux pump [Defense mechani 99.97
PF008731021 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR0010 99.96
COG1033727 Predicted exporters of the RND superfamily [Genera 99.96
PF12349153 Sterol-sensing: Sterol-sensing domain of SREBP cle 99.95
TIGR00920 886 2A060605 3-hydroxy-3-methylglutaryl-coenzyme A red 99.94
TIGR00921719 2A067 The (Largely Archaeal Putative) Hydrophobe/A 99.93
PRK13024755 bifunctional preprotein translocase subunit SecD/S 99.93
COG2409937 Predicted drug exporters of the RND superfamily [G 99.93
COG36961027 Putative silver efflux pump [Inorganic ion transpo 99.92
PRK14726855 bifunctional preprotein translocase subunit SecD/S 99.91
TIGR00833910 actII Transport protein. Characterized members of 99.89
PF03176333 MMPL: MMPL family; InterPro: IPR004869 Proteins of 99.88
PRK13023758 bifunctional preprotein translocase subunit SecD/S 99.87
PF03176333 MMPL: MMPL family; InterPro: IPR004869 Proteins of 99.81
PRK129111403 bifunctional preprotein translocase subunit SecD/S 99.8
TIGR03480 862 HpnN hopanoid biosynthesis associated RND transpor 99.8
COG4258788 Predicted exporter [General function prediction on 99.76
PF02460798 Patched: Patched family; InterPro: IPR003392 The t 99.72
PRK09579 1017 multidrug efflux protein; Reviewed 99.64
COG0841 1009 AcrB Cation/multidrug efflux pump [Defense mechani 99.63
PRK10614 1025 multidrug efflux system subunit MdtC; Provisional 99.62
PRK09577 1032 multidrug efflux protein; Reviewed 99.61
TIGR00915 1044 2A0602 The (Largely Gram-negative Bacterial) Hydro 99.6
PRK15127 1049 multidrug efflux system protein AcrB; Provisional 99.6
PRK10555 1037 aminoglycoside/multidrug efflux system; Provisiona 99.59
PRK10503 1040 multidrug efflux system subunit MdtB; Provisional 99.59
PF00873 1021 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR0010 99.57
TIGR00916192 2A0604s01 protein-export membrane protein, SecD/Se 99.57
PRK13022289 secF preprotein translocase subunit SecF; Reviewed 99.57
TIGR009181145 2A060602 The Eukaryotic (Putative) Sterol Transpor 99.56
KOG1934868 consensus Predicted membrane protein (patched supe 99.56
TIGR00966246 3a0501s07 protein-export membrane protein SecF. Th 99.52
TIGR00914 1051 2A0601 heavy metal efflux pump (cobalt-zinc-cadmiu 99.52
TIGR00917 1204 2A060601 Niemann-Pick C type protein family. The m 99.51
PRK13022289 secF preprotein translocase subunit SecF; Reviewed 99.49
TIGR00916192 2A0604s01 protein-export membrane protein, SecD/Se 99.46
PRK13024 755 bifunctional preprotein translocase subunit SecD/S 99.43
TIGR01129397 secD protein-export membrane protein SecD. SecD fr 99.41
PRK08578292 preprotein translocase subunit SecF; Reviewed 99.4
PRK05812498 secD preprotein translocase subunit SecD; Reviewed 99.4
PRK13023 758 bifunctional preprotein translocase subunit SecD/S 99.35
PRK05812498 secD preprotein translocase subunit SecD; Reviewed 99.34
PRK14726 855 bifunctional preprotein translocase subunit SecD/S 99.33
TIGR00966246 3a0501s07 protein-export membrane protein SecF. Th 99.32
TIGR01129397 secD protein-export membrane protein SecD. SecD fr 99.29
PRK13021297 secF preprotein translocase subunit SecF; Reviewed 99.28
PRK08578292 preprotein translocase subunit SecF; Reviewed 99.26
PRK12933604 secD preprotein translocase subunit SecD; Reviewed 99.21
PRK12933604 secD preprotein translocase subunit SecD; Reviewed 99.21
PRK12911 1403 bifunctional preprotein translocase subunit SecD/S 99.18
PF02355189 SecD_SecF: Protein export membrane protein; InterP 99.12
PRK08343417 secD preprotein translocase subunit SecD; Reviewed 99.12
PF02355189 SecD_SecF: Protein export membrane protein; InterP 99.11
COG3696 1027 Putative silver efflux pump [Inorganic ion transpo 99.1
PRK13021297 secF preprotein translocase subunit SecF; Reviewed 99.08
COG2409 937 Predicted drug exporters of the RND superfamily [G 98.93
COG0341305 SecF Preprotein translocase subunit SecF [Intracel 98.84
KOG3664999 consensus Predicted patched transmembrane receptor 98.81
PRK08343417 secD preprotein translocase subunit SecD; Reviewed 98.78
PF12349153 Sterol-sensing: Sterol-sensing domain of SREBP cle 98.71
COG0342506 SecD Preprotein translocase subunit SecD [Intracel 98.7
COG0341305 SecF Preprotein translocase subunit SecF [Intracel 98.62
COG4258788 Predicted exporter [General function prediction on 98.45
COG0342506 SecD Preprotein translocase subunit SecD [Intracel 98.43
KOG1935 1143 consensus Membrane protein Patched/PTCH [Signal tr 98.17
TIGR00920 886 2A060605 3-hydroxy-3-methylglutaryl-coenzyme A red 97.63
PF03024167 Folate_rec: Folate receptor family; InterPro: IPR0 95.4
KOG19331201 consensus Cholesterol transport protein (Niemann-P 92.5
>TIGR00917 2A060601 Niemann-Pick C type protein family Back     alignment and domain information 
Probab=100.00  E-value=3.4e-201  Score=1947.05  Aligned_cols=1168  Identities=58%  Similarity=0.962  Sum_probs=1018.1

Q ss_pred             eeecccCCCCCCCCcccCCCCCCCCCCChhhHHHHHhhCCCCC----CCCCCCHHHHHHHHHHHHhhhhhccCChhHHhh
Q 000767           53 CAMYDICGARSDRKVLNCPYNIPSVKPDDLLSSKVQSLCPTIT----GNVCCTEDQFDTLRTQVQQAIPFLVGCPACLRN  128 (1294)
Q Consensus        53 C~~~g~c~~~~~~~~~~c~~~~~~~~~~~~~~~~l~~~Cp~~~----~~~CC~~~Q~~~l~~~~~~~~~~~~~CpaC~~N  128 (1294)
                      |+|||+||++++++++|||||++|++|+++.+++++++||+++    +++|||++|+++|++||++++++++|||||++|
T Consensus         1 C~~yg~Cg~~s~~~~l~c~~~~~~~~~~~~~~~~l~~~C~~~~~~~~~~~CC~~~Q~~~l~~nl~~~~~~~~~CpaC~~N   80 (1204)
T TIGR00917         1 CVWYGICGARSDGKVLNCPYNGPSKKPPDDGSSLIQSLCGFSHPNISGNVCCTETQFDTLRSNVQLAIPFLVRCPACLRN   80 (1204)
T ss_pred             CCccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHhCccccccCCCCCCCCHHHHHHHHHHHHHHHHHhCcChhHHHH
Confidence            9999999999999999999999999999999999999999854    469999999999999999999999999999999


Q ss_pred             HHhhccccccCCCCCcceEEEeecccCCCceEEEEEEEEccccchHHhhccccCcccCCChhHHhhcCCC---CcCHHHH
Q 000767          129 FLNLFCELTCSPNQSLFINVTSVSKVSNNLTVDGIDYYITDTFGQGLYESCKDVKFGTMNTRALDFIGGG---AQNFKDW  205 (1294)
Q Consensus       129 ~~~~~C~~tCsP~Qs~F~~v~~~~~~~~~~~v~~~~~~v~~~~~~~~y~SCk~v~~~~~~~~am~~~gg~---a~~~~~~  205 (1294)
                      |+++||+||||||||+|++||++++.+++..|+|+||||+++||+++|||||||++|++|++|||+||||   +|||++|
T Consensus        81 ~~~~~C~~tCsP~Qs~F~~v~~~~~~~~~~~V~~i~~~i~~~~a~~~y~SCk~v~~~~~~~~Amd~~cG~~~~~c~~~~w  160 (1204)
T TIGR00917        81 LLNLFCELTCSPDQSLFMNVTSTTKVKTNSTVDSVQYYITDDFANGMYNSCSNVKFPSSNSRALDFLCGGAANFCNWTNW  160 (1204)
T ss_pred             HHHHhcCCCcCcCccCceeeEEeccCCCCceEEEEEEEECHHHHHHHHHHhhCcccCCCchHHHHhccCCCcCCCCHHHH
Confidence            9999999999999999999999976556667999999999999999999999999999999999999997   7899999


Q ss_pred             HHhhcccCCCCCCCCceeEEecCCCCC-CCCcccCCCCCcCCCCC----CCCccccCCCCCCCCCCCCCCCCCCCCceEe
Q 000767          206 FAFIGRRAAANLPGSPYTIKFWPSAPE-LSGMIPMNVSAYSCADG----SLGCSCGDCTSSPVCSSTAPPPHKSSSCSVK  280 (1294)
Q Consensus       206 ~~flG~~~~~~~~~sP~~i~f~~~~~~-~~~~~~~~~~~~~C~~~----~~~CsC~dC~~~~sC~~~~~~~~~~~~~~~~  280 (1294)
                      |+||||++   +++|||||||+++... +.+++|||..+++|||.    .++|||+||++  |||.+||+++++++|+++
T Consensus       161 ~~f~G~~~---~~~~Pf~i~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~csc~dc~~--~c~~~~~~~~~~~~~~~~  235 (1204)
T TIGR00917       161 IGQMAGVN---NPGAPFGITFLPTPCPVSSGMRPMNVSTYSCGDAVLGCSCGCSCSDCDC--SCKAKPPTPPKPSCSIIL  235 (1204)
T ss_pred             HHhcCCCC---CCCCCeeEEeccCCCccccCcccCCCCCccCCCccCCCCCCccCcCchh--hCCCCCCCCCCCCceEEE
Confidence            99999984   3689999999987532 34799999999999986    48999999999  999877777778888886


Q ss_pred             ecCCccchhhHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccCCCccchhhhhcccccccccccCCccccccch
Q 000767          281 MGSLNAKCVDFALAILYIILVSLFFGWGFFHRKRERSRSFRMKPLVNAMDGSELHSVERQKEENLPMQMLGTPRTRNRIQ  360 (1294)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (1294)
                      .    ++|++|+++++|.+++++++.+++..+++++++..........++.. .+..+ ++++. .....     ..  .
T Consensus       236 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~-~~~~~-----~~--~  301 (1204)
T TIGR00917       236 G----VDAYDVIMAILYIVLVLVFLGGGLLFPVRGKKKTSFMGTLSEASGEI-NSSNN-QSDQN-TPQRN-----EG--Q  301 (1204)
T ss_pred             c----CcchhHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccc-ccccc-ccccc-ccccc-----cc--h
Confidence            4    68999999999988777676665554443332211111100000000 00000 00000 00000     00  2


Q ss_pred             hhhHHHHHHHHHHHhchhhhccchHHHHHHHHHHHHHhhccccceeccCCCcceeCCCChhHHHHHHhhhccCCCCceeE
Q 000767          361 LSIVQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEE  440 (1294)
Q Consensus       361 ~~~~~~~l~~~f~~~g~~var~P~~vl~i~llv~~~l~~Gl~~l~~etdp~~lw~p~~s~~~~e~~~f~~~Fgp~~r~eq  440 (1294)
                      .++++++++++|++||.|++||||++|++++++++++++|+.++++++||+++|+|+++++++|+++||++|||++|+||
T Consensus       302 ~~~~~~~l~~~F~~~G~~var~P~~vi~isllv~~~l~~Gl~~~~vetDpv~Lw~~~~s~ar~E~~~fd~~fgpf~r~eq  381 (1204)
T TIGR00917       302 LATVEGHLARFFTKYGIWVARNPGLVLCLSVSVVLLLGVGLIFFEVETDPVKLWVAPGSRAALEKEFFDTHFGPFYRIEQ  381 (1204)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhCcccCChhhhcCCCCcHHHHHHHHHHHhcCCccceEE
Confidence            45799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCCCCCCCCCCCCcHHHHHHHHHHHHHHhcccccccCccccccccccccCC-CCccccchhhhhccCCCCCCCC-
Q 000767          441 LILATIPDTTHGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLG-QDCATQSVLQYFKMDPKNFDDF-  518 (1294)
Q Consensus       441 vii~~~~~~~~~~~~~il~~~~L~~i~~l~~~l~~l~~~~~~~~~sl~DiC~kp~~-~~C~v~S~~~y~~~~~~~~~~~-  518 (1294)
                      ++++++++..+...++++++++|++++++++++++++.    ++++++|+|+||.+ ..|.++|+++|||++.+.++.. 
T Consensus       382 vii~~~~~~g~~~~g~Vl~~e~L~~v~~L~~~I~~l~~----~~~tl~diC~kp~~~~~C~v~S~~~yfq~~~~~l~~~~  457 (1204)
T TIGR00917       382 LIIAAVQTSQHEKFPPVLDDDNLKLLFDIQKKISQLFA----NLITLDDICFAPLSPYNCFIYSTCGYFQNMYSKLDPEN  457 (1204)
T ss_pred             EEEEecCCCccccCCccCCHHHHHHHHHHHHHHHhhhc----cCCChhccccccCCCCCCccCCHHHHhccChhhcCccc
Confidence            99887522110112469999999999999999999853    36899999999985 6899999999999876544321 


Q ss_pred             -------CCcccccccccccCCCccccccCCCCCCCCccccCccCCcccceeEEEEEEEeecccCcCchhhHHHHHHHHH
Q 000767          519 -------GGVEHVKYCFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKA  591 (1294)
Q Consensus       519 -------~~~~~l~~~~~~~~~~~~cl~~~~~Pl~~~~~lGg~~~~~~~~a~alvit~~l~~~~~~~~~~~~~a~~we~~  591 (1294)
                             ++.+++.+|...+   .+|++.||+|++|+.++||+.++++.+|+|+++||.++|+.++ ++..+.+.+||++
T Consensus       458 ~~~~~~~~~~~~~~~c~~~p---~~c~~~fg~pl~p~~~lgG~~~~~~~~A~Al~lT~~l~n~~~~-~~~~~~a~~WE~~  533 (1204)
T TIGR00917       458 YDDGFGVDYVKYCFECFTSP---ESCLSAFGGPVDPTTALGGFSGNNFSEASAFVVTFPVNNFVNK-TDKLEKAVAWEKA  533 (1204)
T ss_pred             ccccccccHHHhhhccccCc---chhcccCCCcCCcceeeCCcCCCCcccceEEEEEEEEecCCCC-chhhhHHHHHHHH
Confidence                   2445666776543   4699999999999999999988889999999999999986533 2335789999999


Q ss_pred             HHHHHHhhccccccCCCeEEEEccchhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhhHHH
Q 000767          592 FVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGV  671 (1294)
Q Consensus       592 ~~~~v~~~~~~~~~~~~~~v~~~g~~s~~~el~~~~~~d~~~~~is~llm~l~l~~~l~~~~~~~~~~v~Sk~~l~l~~i  671 (1294)
                      |.+.++++..+. ...+++++|++++++++|+++.+..|++.++++|++|++|+++++++++.+++++++||+++|+.|+
T Consensus       534 f~~~~~~~~~~~-~~~~l~~~~~te~Sl~del~~~s~~dv~~~~isyiim~~y~~l~l~~~~~~~~~~v~Sk~~l~l~gv  612 (1204)
T TIGR00917       534 FIQFAKNYLLPN-VQAKLDISFSSERSIEDELKRESTADVITILVSYLVMFAYISLSLGHSKRFKSLFIDSKVLLGISGV  612 (1204)
T ss_pred             HHHHHHHhhccc-cccceEEEEeccccHHHHHhhccchhHHHHHHHHHHHHHHHHHHHccchhhhhhhhhhhhHHHHHHH
Confidence            999998764321 1235899999999999999999999999999999999999999999877666788999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhccccchhhHHHHHHHhhhcccCceEehhHHHHHhcC--CC---------CHHHHHHHHHhhhh
Q 000767          672 VLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQL--EL---------PLETRISNALVEVG  740 (1294)
Q Consensus       672 ~~v~~sv~~s~Gl~~~~Gi~~~~i~~~vipflvlgIGvD~~~~l~~~~~~~~~--~~---------~~~~ai~~al~~~g  740 (1294)
                      +++++|+++++|+++|+|+++++++++++|||+|||||||+|+++++|++..+  +.         +.++|++++++++|
T Consensus       613 ~~v~~sv~~s~Gl~~~~Gi~~t~i~~~v~PFLvL~IGVD~ifilv~~~~r~~~~~~~~~~~~~~~~~~~~ri~~~l~~~G  692 (1204)
T TIGR00917       613 LIVLASVVGSVGVFSYIGLKATLIIMEVIPFLVLAVGVDNIFILVQTYQRLERFYREVGVDNEQELTLEQQLGRALGEVG  692 (1204)
T ss_pred             HHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccccccccccccCCHHHHHHHHHHHhh
Confidence            99999999999999999999998789999999999999999999999987432  22         78999999999999


Q ss_pred             hHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccccCCCcCCCCC
Q 000767          741 PSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDK  820 (1294)
Q Consensus       741 ~si~~tslt~~~~F~~~~~s~~p~vr~F~i~aa~av~~~~l~~lt~~palL~l~~~r~~~~r~d~~~c~~~~~~~~~~~~  820 (1294)
                      +||++|++|++++|++++++++|++|.||+++|+||+++|++|+|+|||+|+++.||++++|.|++||.+.++.....++
T Consensus       693 ~sI~ltslt~~~aF~~g~~s~~Pavr~F~~~aa~av~~~fll~it~f~alL~ld~rR~~~~r~d~~~c~~~~~~~~~~~~  772 (1204)
T TIGR00917       693 PSITLASLSESLAFFLGALSKMPAVRAFSLFAGLAVFIDFLLQITAFVALLVLDFKRTEDNRVDCFPCIKGSKSSISAEK  772 (1204)
T ss_pred             HHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccEEEeeccccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999987543211111


Q ss_pred             CCCCCCccHHHHHHHhHhhccccccceeeehHHHHHHHHHHHhhhhhccCCCCcccccCCCCchhhhHHHHHHhhccCCC
Q 000767          821 GIGQRKPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGP  900 (1294)
Q Consensus       821 ~~~~~~~~~l~~~~~~~ya~~l~~~~~r~~vl~~f~~l~~~si~~~~~i~~gld~~~~lp~dS~~~~~~~~i~~~~~~g~  900 (1294)
                      ...+.+++.+.+|++++|+|+++++++|++|+++|++++++|++|+++|+.|+||+.++|+|||+.+||+.++++|+.||
T Consensus       773 ~~~~~~~~~l~~ff~~~yap~L~~~~vki~Vl~~f~~~~~~si~g~~~i~~gLd~~~~~p~dSyl~~yf~~~~~~~~~gp  852 (1204)
T TIGR00917       773 GSGQRKEGLLTRFFKEVYAPFLLHWIVKIVVIAFFFGLLMFGIALATRIDIGLDQQLALPQDSYLQIYFASLTPLLEVGP  852 (1204)
T ss_pred             CcCcccccHHHHHHHHhcchhhcCCCcceEEEehHHHHHHHHHHHHhhcCCCcCHhhhCCCCCcHHHHHHHHHHhhccCC
Confidence            11234567899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEe-cCCCCchhhhhhccccccccCcchHHHHHHHhccCCCCccccCCccchHHHHHHhhccccccccc-ccCCCC
Q 000767          901 PLYFVVK-NYNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYIAKPAASWLDDFLVWISPEAFGCCR-KFTNGS  978 (1294)
Q Consensus       901 pv~~Vv~-~~d~~~~~~~~~~ic~~~~c~~~sl~~~l~~~~~~~~~s~i~~~~~swlddf~~~l~~~~~~cc~-~~~~~~  978 (1294)
                      |+|+|++ +.||++++ .|+++|+..+|+++|+.++.+      +.+++.+++.+|+|||++|+++. +.||| ...++.
T Consensus       853 pvy~Vv~~~~dy~~~~-~q~~lc~~~~c~~~sl~~~~~------~~~~i~~~~~sWlddf~~wl~~~-~~cc~~~~~~~~  924 (1204)
T TIGR00917       853 PVYFVLKGDYNYTDSE-SQNKVCTGGGCNKDSIVNVFN------NLTYIAKPASSWLDDYFDWASPQ-SSCCCRKFTNGT  924 (1204)
T ss_pred             cEEEEEcCCCCCCCHH-HHHHHhcccCCcHHHHHHhhc------ccchhcCCchHHHHHHHHHhCcc-ccceeecCCCCC
Confidence            9999999 68999875 578999999999999998544      45678889999999999999986 57888 445677


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCcccCCCcccccCCCCCCCCChhHHHhhHHHHHhcCCCccccCCCCCccccceeccCCC
Q 000767          979 YCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYE 1058 (1294)
Q Consensus       979 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~P~~~~f~~~l~~fl~~~p~~~c~~gg~~~y~~~v~~~~~~ 1058 (1294)
                      +|++.+                  +.|..|++...-..++|+.++|+++|++|+++.|+..|++||++.|+.++++++.+
T Consensus       925 ~c~~~~------------------~~~~~c~~~~~~~~~~p~~~~F~~~l~~fl~~~~~~~c~~gg~~~y~~~v~~~~~~  986 (1204)
T TIGR00917       925 FCNGPD------------------PSCFRCADLSSNAQGRPSTTQFKEYLPFFLNDNPSADCAKGGHAAYSSAVDLQGHA  986 (1204)
T ss_pred             cCCCcc------------------ccccccccccccccCCCCHHHHHHHHHHHhcCCCccccccccccccccceEeecCC
Confidence            876332                  35777765222235789999999999999999999999999999999999876544


Q ss_pred             CCeEEEeEEEEecccCCchhHHHHHHHHHHHHHHHhhcccCceeeecceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000767         1059 NGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCL 1138 (1294)
Q Consensus      1059 ~~~I~as~f~~~~~~l~~~~d~i~al~~~r~ia~~~~~~~~~~v~~~s~~~v~~eqy~~i~~~~~~~l~~al~~v~iv~~ 1138 (1294)
                      ++.|.+|||+++|+++++++|++++++++|++++++++..++++|||+.+|+|+|||.+|+++++.++++++++|+++++
T Consensus       987 ~~~I~aS~f~~~h~~l~~~~d~i~a~~~~R~ia~~i~~~~~~~vfpys~~~vf~eQY~~i~~~~~~~l~~a~~~v~~V~~ 1066 (1204)
T TIGR00917       987 NTIIQASYFMTYHTPLNTQADFINALRAAREISANVTRSLKMEVFPYSVFYVFFEQYLTIWSDALINLGISLGAIFIVTL 1066 (1204)
T ss_pred             CceEEEEEEEEeccCCCCHHHHHHHHHHHHHHHHHhhhccCCccccCcCceehhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56799999999999999999999999999999999986678999999999999999999999999999999999999999


Q ss_pred             HHh-chhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhhhheeecceeeeehhhhcc-CCCHHHHHHHHHHHh
Q 000767         1139 ITT-CSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVS-SGDKNQRMKEALGTM 1216 (1294)
Q Consensus      1139 l~~-~s~~~~lii~l~i~~~~v~~~G~M~l~gi~Ln~vslv~lvi~iGi~VD~~ihi~~~f~~~-~~~~~~ai~~al~~~ 1216 (1294)
                      +++ .+++.+++++++|++++++++|+|++||++||++|+++++|++|++|||+.||.|+|... .+++++|+++|++++
T Consensus      1067 l~l~l~~~~aliv~l~I~~i~~~~~g~M~~~gisLN~vSlv~Li~avGisV~f~~hI~~~f~~~~~~~~~~ra~~al~~v 1146 (1204)
T TIGR00917      1067 VLLGLNALSAVNVVISVGMIVVNLVGIMHLWNISLNAVSVVNLVMAKGISIEFCSHINAQFSTSKHFSRNHRAKEALGGM 1146 (1204)
T ss_pred             HHhcccchhHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            998 488999999999999999999999999999999999999999999999999999999876 358999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 000767         1217 GASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFG 1274 (1294)
Q Consensus      1217 g~~V~~~~~lTt~~G~~~L~fs~~~~~~~f~f~~~~~~v~~g~l~~LvlLPvlLs~~g 1274 (1294)
                      |+||+.|+++||++|++||+|+++++|++|||+|++++|++|++|||+||||+||++|
T Consensus      1147 g~~v~~g~tlT~~~g~~~L~f~~s~if~vfff~m~l~iv~~g~~HGLvfLPVlLS~~G 1204 (1204)
T TIGR00917      1147 GSSVFSGITLTKLVGVVVLGFSKSEIFQVYYFRMYLAIVLLGALHGLVFLPVLLSYIG 1204 (1204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999889999999999999999999999999999999999999999999999987

The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis.
>KOG1933 consensus Cholesterol transport protein (Niemann-Pick C disease protein) [Lipid transport and metabolism] Back     alignment and domain information
>TIGR00918 2A060602 The Eukaryotic (Putative) Sterol Transporter (EST) Family Back     alignment and domain information
>PF02460 Patched: Patched family; InterPro: IPR003392 The transmembrane protein, patched, is a receptor for the morphogene Sonic Hedgehog Back     alignment and domain information
>KOG1934 consensus Predicted membrane protein (patched superfamily) [General function prediction only] Back     alignment and domain information
>KOG1935 consensus Membrane protein Patched/PTCH [Signal transduction mechanisms] Back     alignment and domain information
>COG1033 Predicted exporters of the RND superfamily [General function prediction only] Back     alignment and domain information
>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family Back     alignment and domain information
>TIGR00833 actII Transport protein Back     alignment and domain information
>TIGR03480 HpnN hopanoid biosynthesis associated RND transporter like protein HpnN Back     alignment and domain information
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family Back     alignment and domain information
>PRK10614 multidrug efflux system subunit MdtC; Provisional Back     alignment and domain information
>PRK10503 multidrug efflux system subunit MdtB; Provisional Back     alignment and domain information
>PRK09579 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK09577 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK10555 aminoglycoside/multidrug efflux system; Provisional Back     alignment and domain information
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium) Back     alignment and domain information
>PRK15127 multidrug efflux system protein AcrB; Provisional Back     alignment and domain information
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors [] Back     alignment and domain information
>COG1033 Predicted exporters of the RND superfamily [General function prediction only] Back     alignment and domain information
>PF12349 Sterol-sensing: Sterol-sensing domain of SREBP cleavage-activation Back     alignment and domain information
>TIGR00920 2A060605 3-hydroxy-3-methylglutaryl-coenzyme A reductase Back     alignment and domain information
>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family Back     alignment and domain information
>PRK13024 bifunctional preprotein translocase subunit SecD/SecF; Reviewed Back     alignment and domain information
>COG2409 Predicted drug exporters of the RND superfamily [General function prediction only] Back     alignment and domain information
>COG3696 Putative silver efflux pump [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK14726 bifunctional preprotein translocase subunit SecD/SecF; Provisional Back     alignment and domain information
>TIGR00833 actII Transport protein Back     alignment and domain information
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria Back     alignment and domain information
>PRK13023 bifunctional preprotein translocase subunit SecD/SecF; Reviewed Back     alignment and domain information
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria Back     alignment and domain information
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed Back     alignment and domain information
>TIGR03480 HpnN hopanoid biosynthesis associated RND transporter like protein HpnN Back     alignment and domain information
>COG4258 Predicted exporter [General function prediction only] Back     alignment and domain information
>PF02460 Patched: Patched family; InterPro: IPR003392 The transmembrane protein, patched, is a receptor for the morphogene Sonic Hedgehog Back     alignment and domain information
>PRK09579 multidrug efflux protein; Reviewed Back     alignment and domain information
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>PRK10614 multidrug efflux system subunit MdtC; Provisional Back     alignment and domain information
>PRK09577 multidrug efflux protein; Reviewed Back     alignment and domain information
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family Back     alignment and domain information
>PRK15127 multidrug efflux system protein AcrB; Provisional Back     alignment and domain information
>PRK10555 aminoglycoside/multidrug efflux system; Provisional Back     alignment and domain information
>PRK10503 multidrug efflux system subunit MdtB; Provisional Back     alignment and domain information
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors [] Back     alignment and domain information
>TIGR00916 2A0604s01 protein-export membrane protein, SecD/SecF family Back     alignment and domain information
>PRK13022 secF preprotein translocase subunit SecF; Reviewed Back     alignment and domain information
>TIGR00918 2A060602 The Eukaryotic (Putative) Sterol Transporter (EST) Family Back     alignment and domain information
>KOG1934 consensus Predicted membrane protein (patched superfamily) [General function prediction only] Back     alignment and domain information
>TIGR00966 3a0501s07 protein-export membrane protein SecF Back     alignment and domain information
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium) Back     alignment and domain information
>TIGR00917 2A060601 Niemann-Pick C type protein family Back     alignment and domain information
>PRK13022 secF preprotein translocase subunit SecF; Reviewed Back     alignment and domain information
>TIGR00916 2A0604s01 protein-export membrane protein, SecD/SecF family Back     alignment and domain information
>PRK13024 bifunctional preprotein translocase subunit SecD/SecF; Reviewed Back     alignment and domain information
>TIGR01129 secD protein-export membrane protein SecD Back     alignment and domain information
>PRK08578 preprotein translocase subunit SecF; Reviewed Back     alignment and domain information
>PRK05812 secD preprotein translocase subunit SecD; Reviewed Back     alignment and domain information
>PRK13023 bifunctional preprotein translocase subunit SecD/SecF; Reviewed Back     alignment and domain information
>PRK05812 secD preprotein translocase subunit SecD; Reviewed Back     alignment and domain information
>PRK14726 bifunctional preprotein translocase subunit SecD/SecF; Provisional Back     alignment and domain information
>TIGR00966 3a0501s07 protein-export membrane protein SecF Back     alignment and domain information
>TIGR01129 secD protein-export membrane protein SecD Back     alignment and domain information
>PRK13021 secF preprotein translocase subunit SecF; Reviewed Back     alignment and domain information
>PRK08578 preprotein translocase subunit SecF; Reviewed Back     alignment and domain information
>PRK12933 secD preprotein translocase subunit SecD; Reviewed Back     alignment and domain information
>PRK12933 secD preprotein translocase subunit SecD; Reviewed Back     alignment and domain information
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed Back     alignment and domain information
>PF02355 SecD_SecF: Protein export membrane protein; InterPro: IPR022813 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway Back     alignment and domain information
>PRK08343 secD preprotein translocase subunit SecD; Reviewed Back     alignment and domain information
>PF02355 SecD_SecF: Protein export membrane protein; InterPro: IPR022813 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway Back     alignment and domain information
>COG3696 Putative silver efflux pump [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK13021 secF preprotein translocase subunit SecF; Reviewed Back     alignment and domain information
>COG2409 Predicted drug exporters of the RND superfamily [General function prediction only] Back     alignment and domain information
>COG0341 SecF Preprotein translocase subunit SecF [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG3664 consensus Predicted patched transmembrane receptor [Signal transduction mechanisms] Back     alignment and domain information
>PRK08343 secD preprotein translocase subunit SecD; Reviewed Back     alignment and domain information
>PF12349 Sterol-sensing: Sterol-sensing domain of SREBP cleavage-activation Back     alignment and domain information
>COG0342 SecD Preprotein translocase subunit SecD [Intracellular trafficking and secretion] Back     alignment and domain information
>COG0341 SecF Preprotein translocase subunit SecF [Intracellular trafficking and secretion] Back     alignment and domain information
>COG4258 Predicted exporter [General function prediction only] Back     alignment and domain information
>COG0342 SecD Preprotein translocase subunit SecD [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1935 consensus Membrane protein Patched/PTCH [Signal transduction mechanisms] Back     alignment and domain information
>TIGR00920 2A060605 3-hydroxy-3-methylglutaryl-coenzyme A reductase Back     alignment and domain information
>PF03024 Folate_rec: Folate receptor family; InterPro: IPR018143 This entry represents a domain found in folate receptors and at the N terminus of hedgehog-interacting proteins Back     alignment and domain information
>KOG1933 consensus Cholesterol transport protein (Niemann-Pick C disease protein) [Lipid transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1294
3gkh_A232 Npc1(ntd) Length = 232 5e-23
3qnt_A265 Npc1l1 (Ntd) Structure Length = 265 3e-18
>pdb|3GKH|A Chain A, Npc1(ntd) Length = 232 Back     alignment and structure 
Iteration: 1

 Score =  107 bits (266), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 105/223 (47%), Gaps = 19/223 (8%)
Query: 53  CAMYDICGARSDRKVLNCPYNIPSVKPDDLLSSKVQSLCPTI---TGNVCCTEDQFDTLR 109
           C  Y  CG     K  NC Y+ P           VQ LCP       ++CC   Q  TL+
Sbjct: 5   CVWYGECGIAYGDKRYNCEYSGPPKPLPKDGYDLVQELCPGFFFGQVSLCCDVRQLQTLK 64
Query: 110 TQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTS----VSKVSNN--LTVDGI 163
             +Q  + FL  CP+C  N LNLFCELTCSP QS F+ VT+    V  V+N     V  +
Sbjct: 65  DNLQLPLQFLSRCPSCFYNLLNLFCELTCSPRQSQFLQVTATEDYVDPVTNQTKTNVKEL 124
Query: 164 DYYITDTFGQGLYESCKDVKFGTMNTRALDFIGG---GAQNFKDWFAFIGRRAAANLPGS 220
            YY+  +F   +Y +C+DV+  + N +AL  + G    A    +W  ++  +       +
Sbjct: 125 QYYVGQSFANAMYNACRDVEAPSSNDKALGLLCGKDADACQATNWIEYMFNKDNGQ---A 181
Query: 221 PYTIKFWPSAPELSGMIPMNVSAYSCADG----SLGCSCGDCT 259
           P+TI    S   + GM PMN +   C +     +  CSC DC+
Sbjct: 182 PFTITPVFSDFPVHGMEPMNNATKGCDESVDEVTAPCSCQDCS 224
>pdb|3QNT|A Chain A, Npc1l1 (Ntd) Structure Length = 265 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1294
3qnt_A265 Niemann-PICK C1-like protein 1; cholesterol transp 1e-75
3gkj_A232 Niemann-PICK C1 protein; oxysterol, cholesterol, c 1e-74
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-11
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
>3qnt_A Niemann-PICK C1-like protein 1; cholesterol transport protein, transport protein; HET: NAG; 2.83A {Homo sapiens} Length = 265 Back     alignment and structure
 Score =  250 bits (639), Expect = 1e-75
 Identities = 75/257 (29%), Positives = 106/257 (41%), Gaps = 29/257 (11%)

Query: 47  KHVEEFCAMYDICGARSD-------RKVLNCPYNIPSVKPDDLLSSKVQSLCPTI----T 95
            H   +CA YD CG   +          ++C  N P+ K        +Q +CP +     
Sbjct: 8   IHQPGYCAFYDECGKNPELSGSLMTLSNVSCLSNTPARKITGDHLILLQKICPRLYTGPN 67

Query: 96  GNVCCTEDQFDTLRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVSKVS 155
              CC+  Q  +L   +      L  CPAC  NF+NL C  TCSPNQSLFINVT V+++ 
Sbjct: 68  TQACCSAKQLVSLEASLSITKALLTRCPACSDNFVNLHCHNTCSPNQSLFINVTRVAQLG 127

Query: 156 NN--LTVDGIDYYITDTFGQGLYESCKDVKFGTMNTRALDFI----GGGAQNFKDWFAFI 209
                 V   + +   +F +  Y+SC  V+     T A+  +    G    N + W  F 
Sbjct: 128 AGQLPAVVAYEAFYQHSFAEQSYDSCSRVRVPAAATLAVGTMCGVYGSALCNAQRWLNFQ 187

Query: 210 GRRAAANLPGSPYTIKF---WPSAPELSGMIPMNVSAYSC----ADGSLGCSCGDCTSSP 262
           G         +P  I F    P     SG+ P+N     C     D    CSC DC +S 
Sbjct: 188 G---DTGNGLAPLDITFHLLEPGQAVGSGIQPLNEGVARCNESQGDDVATCSCQDCAAS- 243

Query: 263 VCSSTAPPPHKSSSCSV 279
            C + A P    S+  +
Sbjct: 244 -CPAIARPQALDSTFYL 259
>3gkj_A Niemann-PICK C1 protein; oxysterol, cholesterol, cholesterol transfer, disease mutati endosome, glycoprotein, lysosome, membrane, transmembrane; HET: NAG HC3; 1.60A {Homo sapiens} PDB: 3gkh_A* 3gki_A* Length = 232 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1294
d1iwga7199 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux trans 4e-07
d1iwga8222 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux t 2e-04
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]} Length = 199 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Multidrug efflux transporter AcrB transmembrane domain
superfamily: Multidrug efflux transporter AcrB transmembrane domain
family: Multidrug efflux transporter AcrB transmembrane domain
domain: Multidrug efflux transporter AcrB transmembrane domain
species: Escherichia coli [TaxId: 562]

 Score = 49.7 bits (118), Expect = 4e-07
 Identities = 23/159 (14%), Positives = 59/159 (37%), Gaps = 5/159 (3%)

Query: 1120 RTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVN 1179
               +  L  AI  VF+V  +   +F ++ I  + + ++++    V+A     +N +++  
Sbjct: 39   HEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFG 98

Query: 1180 LVMAVGIAVEFCVHITHAFSVSSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSR 1239
            +V+A+G+ V+  + +         ++    KEA       +   +    +V   V     
Sbjct: 99   MVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMA 158

Query: 1240 TEVFVVYYFQMYLALVLLG-----FLHGLVFLPVVLSVF 1273
                         ++ ++       L  L+  P + +  
Sbjct: 159  FFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATM 197
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]} Length = 222 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1294
d1iwga7199 Multidrug efflux transporter AcrB transmembrane do 99.9
d1iwga7199 Multidrug efflux transporter AcrB transmembrane do 99.84
d1iwga8222 Multidrug efflux transporter AcrB transmembrane do 99.83
d1iwga8222 Multidrug efflux transporter AcrB transmembrane do 99.74
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Multidrug efflux transporter AcrB transmembrane domain
superfamily: Multidrug efflux transporter AcrB transmembrane domain
family: Multidrug efflux transporter AcrB transmembrane domain
domain: Multidrug efflux transporter AcrB transmembrane domain
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=2e-23  Score=155.60  Aligned_cols=156  Identities=13%  Similarity=0.258  Sum_probs=136.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHEEECCEEEEEH
Q ss_conf             99999999999999999999999731346999999999999999999999842535068899999644125011032112
Q 000767         1117 DIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITH 1196 (1294)
Q Consensus      1117 ~i~~~~~~~l~lal~~Ifiv~~ll~~s~~~~lii~l~i~~~iv~~~G~M~l~gI~Ln~vSlv~lvi~iGIsVdf~iHi~~ 1196 (1294)
                      .-.++....+.++++.++++++++++|++.++++++++++.++..+|+|+++|+++|.+++..+++++|++|||++|+.+
T Consensus        36 ~si~~~~~~l~ia~~lv~~vl~l~~rs~~~~li~~~~i~~~i~~~~~~m~~~g~~l~~~s~~~~~i~igi~vd~~i~i~~  115 (199)
T d1iwga7          36 ISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVE  115 (199)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCCCTTTTTHHHHHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf             99999999999999999999999986015463110011002677788762378834777888788898884233788999


Q ss_pred             HHHC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             4451----489989999999998558999998899899888640147403---799899999999999999999999999
Q 000767         1197 AFSV----SSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEV---FVVYYFQMYLALVLLGFLHGLVFLPVV 1269 (1294)
Q Consensus      1197 ~f~~----~~~~~~er~~~Al~~~G~sVl~g~tlT~~~Gi~vLafs~~~i---f~~f~frm~~~~vi~g~l~~LilLPvl 1269 (1294)
                      ++.+    ++.+++|++.++.+++|+|++.++ +|+.+|+++|++++...   ++.+.+. ....++++++++++++|++
T Consensus       116 ~~~~~~~~~g~~~~eAi~~a~~~~g~~i~~s~-lTt~~~f~~l~~~~~~~~~~~~~~g~~-i~~gv~~s~i~al~llPal  193 (199)
T d1iwga7         116 NVERVMAEEGLPPKEATRKSMGQIQGALVGIA-MVLSAVFVPMAFFGGSTGAIYRQFSIT-IVSAMALSVLVALILTPAL  193 (199)
T ss_dssp             HHHHHHHHTSCCSHHHHHHGGGTHHHHHHHHH-HHHHHHHTTTTCCCTTSHHHHHHHHHH-HHHHHHHHHHHTTTHHHHH
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_conf             99999986699889999998767665788999-999998898830788299999999999-9999999999999999999


Q ss_pred             HHHHC
Q ss_conf             86308
Q 000767         1270 LSVFG 1274 (1294)
Q Consensus      1270 Ls~~g 1274 (1294)
                      ++++.
T Consensus       194 l~~~~  198 (199)
T d1iwga7         194 CATML  198 (199)
T ss_dssp             HHHSC
T ss_pred             HHHHC
T ss_conf             99864
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure