Citrus Sinensis ID: 000768

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290----

MENSEYTKAISGDKIDGPSFNNVHQVNTASLGNFSGNGNVSGNSNVDIQSLLDMEELLDKELEEAQEHRRICEIEERKALKAYRKAQRALIEANASCTKLYRQRELCSARFRSFVMDDSNLLWSSGQHETLGNEFDLSKHVSGNMHLAPTSTHQMQSGYVGYNQGGYDSSMQCINGDLQNFSHEHENGQNLGSEPCSEQDASTSELLPRKSKNALNGISPQSNELMVSADEEEEACQLDLESVQPNFEYQQKDQIAEGRQISTDYRHNNKLSAVSSQDPLLLEATLRSELFARLGMRTFSKDSGSCFNVEPSVEQRADNDIGSDKMQMSNGSVPSSGEQSQQHDIGGTDKPERRIQEAPFQIQDKCLVEKGLLEFHSTYHSKGNKFPTTMNHSTSVLLSPPILRGAFGHLKSELCIALSNQSGNQHNHGRNFEIEEVACVNSDKTQACYLIANSKPDIVKGYVGKEMGSYTCNLAIDPLWPLCMYELRGKCNNDECPWQHVKYFADRNKNLHDDSDSAGCQIGSTIPQEHCNVGTKLSKGHDILTPPTYIVGLDILKADSYQYQSVIARRHGLCWQKCLSVSLAISSIYPKDLPADLSLIGDGRIECIGSWNRQSSFFRSRNGVLNKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLLNSYLDRARSLPYLKLLPRQFINNIERPRLQQLIDNLLSPVSSDFSLVNLVLEVCYGPSLLPRNFSKLKDLVDFVEGIMEIVPSNYQLAFSVFKLLNKDHNPNITDAVPESVLFWASSSLVSAIFHAVPVAPEYVWVEAAGILGNISSIEEISERFFKRALSVYPFSIKLWKCYYDLSKTKGDLNTIVKAAREKGIELD

cccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccHHHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccccccccccHHHHHHHccccccHHHHHHHHHHHHHccccHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHcHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHccccHHHHHHHccccccccccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccHHHHHHHHHHHccccc

cccccccccccccccccccHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccHcHcccccccccccccHHHcHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccEEcccccccccccccEEEccccccccHHHHHHcccccccccccccccccHHHccccEEEccccccccccccccccccccccccccccccccccHHHHcccccccccccHHHHHHHHccccccccccccccccccccccEEEEcccHHHHHcccccccccccccccccccccEEEEEEEccccccccccEEEEccccccccccccccccccccccccccccccccccHHHHEcEccccEEEEEHcHHccccHccHHHHHccccccccccccccccccccccccccccccccccccEEEEcccccEcccccccHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccEEEEHHHHHHHcccccccHHHHHHHHHHHccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccccccccHHHHHHHHHccHcHHHHHHHHHHHHHHHHHccHHHHccccccccHccccccccccccccHHHHHHHHHHHHHHHcHcccccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccHHEEEEEEEEEHccccccccHHHHHHHHcccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccccEEEccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccHHHHHHHHHHcccccccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHcccEcc

menseytkaisgdkidgpsfnnvhqvntaslgnfsgngnvsgnsnvdIQSLLDMEELLDKELEEAQEHRRICEIEERKALKAYRKAQRALIEANASCTKLYRQRELCSARFRSfvmddsnllwssgqhetlgnefdlskhvsgnmhlaptsthqmqsgyvgynqggydssmqcingdlqnfshehengqnlgsepcseqdastsellprksknalngispqsnelmvsadEEEEACQLDlesvqpnfeyqqkdqiaegrqistdyrhnnklsavssqdplLLEATLRSELFARLGmrtfskdsgscfnvepsveqradndigsdkmqmsngsvpssgeqsqqhdiggtdkperriqeapfqiQDKCLVEKGLLEFHStyhskgnkfpttmnhstsvllsppilrgafGHLKSELCIALsnqsgnqhnhgrnfeieevacvnsdktqACYLIAnskpdivkgyvgkemgsytcnlaidplwplcmyelrgkcnndecpwqHVKYFADrnknlhddsdsagcqigstipqehcnvgtklskghdiltpptyiVGLDILKADSYQYQSVIARRHGLCWQKCLSVSLAissiypkdlpadlsligdgriecigswnrqssffrsrngvlnklKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRaleadptseILWITYLLIFYSntnsvgkddmfsysvkhneGSYALWLMYInsrtplnhrLDAYDAALSVLCRcasasdgdemhASACILDLFLQMLQCFCMSGNTEKAIQRISRLlipatgsndrhslFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKelfaidwppvqledDEKQRAIKLIEMAVNSVelysngesleketnlrsaHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLqkhdfgdlssvgfeealikwpkgvpgiqCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSqveisdplvadmshsspeststsdpefsvsnrnQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLinesepkegapiSWQLKLLNSYLDRarslpylkllprqfinnierpRLQQLIDNllspvssdfsLVNLVLEVcygpsllprnfsklKDLVDFVEGIMEIVPSNYQLAFSVFKLLnkdhnpnitdavpeSVLFWASSSLVSAIFHavpvapeyVWVEAAGILGNISSIEEISERFFKRALSVYPFSIKLWKCYYDLSKTKGDLNTIVKAAREKGIELD

menseytkaisgdkidgpsFNNVHQVNTASLGNFSGNGNVSGNSNVDIQSLLDMEELLDKELEEAQEHRRICEIEERKALKAYRKAQRALIEANASCTKLYRQRELCSARFRSFVMDDSNLLWSSGQHETLGNEFDLSKHVSGNMHLAPTSTHQMQSGYVGYNQGGYDSSMQCINGDLQNFSHEHENGQNLGSEPCSEQDASTSELLPRKSKNALNGISPQSNELMVSADEEEEACQLDLESVQPNFEYQQKDQIAEGRQISTDYRHNNKLsavssqdpllLEATLRSELFARLGMRtfskdsgscfnVEPSVEQRADNDIGSDKMQMSNGsvpssgeqsqqHDIGGTDKPERRIQEAPFQIQDKCLVEKGLLEFHSTYHSKGNKFPTTMNHSTSVLLSPPILRGAFGHLKSELCIALSNQSGNQHNHGRNFEIEEVACVNSDKTQACYLIANSKPDIVKGYVGKEMGSYTCNLAIDPLWPLCMYELRGKCNNDECPWQHVKYFADRNKNLHDDSDSAGCQIGSTIPQEHCNVGTKLSKGHDILTPPTYIVGLDILKADSYQYQSVIARRHGLCWQKCLSVSLAISSIYPKDLPADLSLIGDGRIECIGSWNRQSSFFRSRNGVLNKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELfaidwppvqLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSpeststsdpefsvSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLLNSYLDRARSLPYLKLLPRQFINNIERPRLQQLIDNLLSPVSSDFSLVNLVLEVCYGPSLLPRNFSKLKDLVDFVEGIMEIVPSNYQLAFSVFKLLNKDHNPNITDAVPESVLFWASSSLVSAIFHAVPVAPEYVWVEAAGILGNISSIEEISERFFKRALSVYPFSIKLWKCYYDlsktkgdlnTIVKAAREKGIELD

MENSEYTKAISGDKIDGPSFNNVHQVNTAslgnfsgngnvsgnsnVDIQSlldmeelldkeleeAQEHRRICEIEERKALKAYRKAQRALIEANASCTKLYRQRELCSARFRSFVMDDSNLLWSSGQHETLGNEFDLSKHVSGNMHLAPTSTHQMQSGYVGYNQGGYDSSMQCINGDLQNFSHEHENGQNLGSEPCSEQDASTSELLPRKSKNALNGISPQSNELMVSADEEEEACQLDLESVQPNFEYQQKDQIAEGRQISTDYRHNNKLSAVSSQDPLLLEATLRSELFARLGMRTFSKDSGSCFNVEPSVEQRADNDIGSDKMQMSNGSVPSSGEQSQQHDIGGTDKPERRIQEAPFQIQDKCLVEKGLLEFHSTYHSKGNKFPTTMNHSTSVLLSPPILRGAFGHLKSELCIALSNQSGNQHNHGRNFEIEEVACVNSDKTQACYLIANSKPDIVKGYVGKEMGSYTCNLAIDPLWPLCMYELRGKCNNDECPWQHVKYFADRNKNLHDDSDSAGCQIGSTIPQEHCNVGTKLSKGHDILTPPTYIVGLDILKADSYQYQSVIARRHGLCWQKCLSVSLAISSIYPKDLPADLSLIGDGRIECIGSWNRQSSFFRSRNGVLNKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMshsspeststsdpefsVSNRNQMDVMFGYLNLSLHRLLQNDWNEarlaidaalkaaaSEHFKHCVREHAMLLLINESEPKEGAPISWQLKLLNSYLDRARSLPYLKLLPRQFINNIERPRLQQLIDNLLSPVSSDFSLVNLVLEVCYGPSLLPRNFSKLKDLVDFVEGIMEIVPSNYQLAFSVFKLLNKDHNPNITDAVPESVLFWASSSLVSAIFHAVPVAPEYVWVEAAGILGNISSIEEISERFFKRALSVYPFSIKLWKCYYDLSKTKGDLNTIVKAAREKGIELD

*********************************************************************RICEIEERKALKAYRKAQRALIEANASCTKLYRQRELCSARFRSFVMDDSNLLWSSGQH*TL***************************YVGYNQGGYD***QCI*********************************************************************************************************LLLEATLRSELFARLGMRT*************************************************************FQIQDKCLVEKGLLEFHSTYHSKGNKFPTTMNHSTSVLLSPPILRGAFGHLKSELCIALSN******NHGRNFEIEEVACVNSDKTQACYLIANSKPDIVKGYVGKEMGSYTCNLAIDPLWPLCMYELRGKCNNDECPWQHVKYFADRNKNL*******GCQIGSTIPQEHCNVGTKLSKGHDILTPPTYIVGLDILKADSYQYQSVIARRHGLCWQKCLSVSLAISSIYPKDLPADLSLIGDGRIECIGSWNRQSSFFRSRNGVLNKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEIS*****************************MDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLLNSYLDRARSLPYLKLLPRQFINNIERPRLQQLIDNLLSPVSSDFSLVNLVLEVCYGPSLLPRNFSKLKDLVDFVEGIMEIVPSNYQLAFSVFKLLNKDHNPNITDAVPESVLFWASSSLVSAIFHAVPVAPEYVWVEAAGILGNISSIEEISERFFKRALSVYPFSIKLWKCYYDLSKTKGDLNTIVK**********

***********************HQVNTASLGNFSGNGNVS**SNVDIQSLLDMEE************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************NSDKTQACYLIANSKPDIVK*********YTCNLAIDPLWPLCMYELRGKCNNDECPWQHVKYFA********************************SKGHDILTPPTYIVGLDILKADSYQYQSVIARRHGLCWQKC********************************WNR*SSFFR***G*****KQVELSNEQCVEMALLILNQ******GMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVL**************SACILDLFLQMLQCFCMSGNTEKAIQRISRLLI*********SLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELY**********NLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADM********************NQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLL****************KLLNSYLDRARSLPYLKLLPRQFINNIERPRLQQLIDNLLSPVSSDFSLVNLVLEVCYGPSLLPRNFSKLKDLVDFVEGIMEIVPSNYQLAFSVFKLLNKDHN*****AVPESVLFWASSSLVSAIFHAVPVAPEYVWVEAAGILGNISSIEEISERFFKRALSVYPFSIKLWKCYYDLSKTKGD****V*AAREKGIE**

*********ISGDKIDGPSFNNVHQVNTASLGNFSGNGNVSGNSNVDIQSLLDMEELLDKELEEAQEHRRICEIEERKALKAYRKAQRALIEANASCTKLYRQRELCSARFRSFVMDDSNLLWSSGQHETLGNEFDLSKHVSGNMHLAPTSTHQMQSGYVGYNQGGYDSSMQCINGDLQNFSHEHE********************LPRKSKNALNGISPQSNELMVSADEEEEACQLDLESVQPNFEYQQKDQIAEGRQISTDYRHNNKLSAVSSQDPLLLEATLRSELFARLGMRTFSKDSGSCFNVEPSVEQRADNDIGSDKMQ*********************DKPERRIQEAPFQIQDKCLVEKGLLEFHSTYHSKGNKFPTTMNHSTSVLLSPPILRGAFGHLKSELCIALSNQSGNQHNHGRNFEIEEVACVNSDKTQACYLIANSKPDIVKGYVGKEMGSYTCNLAIDPLWPLCMYELRGKCNNDECPWQHVKYFADRNKNLHDDSDSAGCQIGSTIPQEHCNVGTKLSKGHDILTPPTYIVGLDILKADSYQYQSVIARRHGLCWQKCLSVSLAISSIYPKDLPADLSLIGDGRIECIGSWNRQSSFFRSRNGVLNKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVA*****************SVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLLNSYLDRARSLPYLKLLPRQFINNIERPRLQQLIDNLLSPVSSDFSLVNLVLEVCYGPSLLPRNFSKLKDLVDFVEGIMEIVPSNYQLAFSVFKLLNKDHNPNITDAVPESVLFWASSSLVSAIFHAVPVAPEYVWVEAAGILGNISSIEEISERFFKRALSVYPFSIKLWKCYYDLSKTKGDLNTIVKAAREKGIELD

*********ISGDKIDGPSFNNVHQVNTASLGNFSGNGNVSGNSNVDIQSLLDMEELLDKELEEAQEHRRICEIEERKALKAYRKAQRALIEANASCTKLYRQRELCSARFRSFVMDDSNLLWSSGQHETLGNEFDLSKHVSGNMHLAPTSTHQMQSGYVGYNQGGY*******************************************************************ACQLDLE**Q****************************AVSSQDPLLLEATLRSELFARLGMRTFSKDSGSCFNVEPSVEQRADNDIGSDKMQMSNGSVPSSGEQSQQHDIGGTDKPERRIQEAPFQIQDKCLVEKGLLEFHSTYHSKGNKFPTTMNHSTSVLLSPPILRGAFGHLKSELCIALSNQSGNQHNHGRNFEIEEVACVNSDKTQACYLIANSKPDIVKGYVGKEMGSYTCNLAIDPLWPLCMYELRGKCNNDECPWQHVKYFADRN**********GCQIGSTI******VGTKLSKGHDILTPPTYIVGLDILKADSYQYQSVIARRHGLCWQKCLSVSLAISSIYPKDLPADLSLIGDGRIECIGSWNRQSSFFRSRNGVLNKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVAD*********************NQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLLNSYLDRARSLPYLKLLPRQFINNIERPRLQQLIDNLLSPVSSDFSLVNLVLEVCYGPSLLPRNFSKLKDLVDFVEGIMEIVPSNYQLAFSVFKLLNKDHNPN*TDAVPESVLFWASSSLVSAIFHAVPVAPEYVWVEAAGILGNISSIEEISERFFKRALSVYPFSIKLWKCYYDLSKTKGDLNTIVKAAREK***L*

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MENSEYTKAISGDKIDGPSFNNVHQVNTASLGNFSGNGNVSGNSNVDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxALKAYRKAQRALIEANASCTKLYRQRELCSARFRSFVMDDSNLLWSSGQHETLGNEFDLSKHVSGNMHLAPTSTHQMQSGYVGYNQGGYDSSMQCINGDLQNFSHEHENGQNLGSEPCSEQDASTSELLPRKSKNALNGISPQSNELMVSADEEEEACQLDLESVQPNFEYQQKDQIAEGRQISTDYRHNNKLSAVSSQDPLLLEATLRSELFARLGMRTFSKDSGSCFNVEPSVEQRADNDIGSDKMQMSNGSVPSSGEQSQQHDIGGTDKPERRIQEAPFQIQDKCLVEKGLLEFHSTYHSKGNKFPTTMNHSTSVLLSPPILRGAFGHLKSELCIALSNQSGNQHNHGRNFEIEEVACVNSDKTQACYLIANSKPDIVKGYVGKEMGSYTCNLAIDPLWPLCMYELRGKCNNDECPWQHVKYFADRNKNLHDDSDSAGCQIGSTIPQEHCNVGTKLSKGHDILTPPTYIVGLDILKADSYQYQSVIARRHGLCWQKCLSVSLAISSIYPKDLPADLSLIGDGRIECIGSWNRQSSFFRSRNGVLNKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLLNSYLDRARSLPYLKLLPRQFINNIERPRLQQLIDNLLSPVSSDFSLVNLVLEVCYGPSLLPRNFSKLKDLVDFVEGIMEIVPSNYQLAFSVFKLLNKDHNPNITDAVPESVLFWASSSLVSAIFHAVPVAPEYVWVEAAGILGNISSIEEISERFFKRALSVYPFSIKLWKCYYDLSKTKGDLNTIVKAAREKGIELD

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1294	2.2.26 [Sep-21-2011]
O60293		1989	Zinc finger C3H1 domain-c	yes	no	0.345	0.224	0.198	0.0003

>sp\|O60293\|ZC3H1_HUMAN Zinc finger C3H1 domain-containing protein OS=Homo sapiens GN=ZFC3H1 PE=1 SV=3	Back alignment and function desciption

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 100/503 (19%), Positives = 194/503 (38%), Gaps = 56/503 (11%)

Query: 467  MGSYTCNLAIDPLWPLCMYELRGKCNNDECPWQHVKYFADRNKNLHDDSDS-----AGCQ 521
            + S + +  I+P    C ++L G CN+D+C WQH++ +    K L  D  S      GC 
Sbjct: 1170 LSSVSYSNMIEPDQCFCRFDLTGTCNDDDCQWQHIQDYTLSRKQLFQDILSYNLSLIGCA 1229

Query: 522  IGSTIPQEHCNVGTKLSKGHDILTPPTYIVGLDIL--------KADSYQYQSVIARR--H 571
              ST  +   +    + K   +      +  + +L        K  +  + +   +R   
Sbjct: 1230 ETSTNEEITASAEKYVEKLFGVNKDRMSMDQMAVLLVSNINESKGHTPPFTTYKDKRKWK 1289

Query: 572  GLCWQKCLSVSLAISSIYPKDLPADLSLIGDGRI-----ECIGSWNRQSSFFRSRNGVLN 626
               W+K +S +   S       P   +   + +I     + + + +    F    + + N
Sbjct: 1290 PKFWRKPISDNSFSSDEEQSTGPIKYAFQPENQINVPALDTVVTPDDVRYFTNETDDIAN 1349

Query: 627  KLKQVELSNEQCVEMALLILNQDANKLEG-----MKKALSLLSRALEADPTSEILWITYL 681
             L+   L N   V++ L +  +  N+ EG     +  AL++L+RALE +  +  +W  YL
Sbjct: 1350 -LEASVLENPSHVQLWLKLAYKYLNQNEGECSESLDSALNVLARALENNKDNPEIWCHYL 1408

Query: 682  LIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASA 741
             +F          +M   +V++     + W  +++  +    +    +  L  L   A  
Sbjct: 1409 RLFSKRGTKDEVQEMCETAVEYAPDYQSFW-TFLHLESTFEEKDYVCERMLEFLMGAAKQ 1467

Query: 742  SDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTC 801
               + +  S  +L+  L  +Q    +G  + A+  +   L     +ND        +   
Sbjct: 1468 ETSNIL--SFQLLEALLFRVQLHIFTGRCQSALAILQNAL---KSAND------GIVAEY 1516

Query: 802  LTISDKLIFWVCCVYLVIYRKLP--------DAVLQLLECEKELFAIDWPPVQLEDDEKQ 853
            L  SD+ + W+  ++L+ +  LP        D   +++  E   F + W  VQ       
Sbjct: 1517 LKTSDRCLAWLAYIHLIEFNILPSKFYDPSNDNPSRIVNTES--FVMPWQAVQDVKTNPD 1574

Query: 854  RAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIK 913
              + + E AV +       ESL  E  + +      N I    +L   E +M L +  ++
Sbjct: 1575 MLLAVFEDAVKAC----TDESLAVEERIEACLPLYTNMIALHQLLERYEAAMELCKSLLE 1630

Query: 914  LYP---SCLE-LVLMKARLQKHD 932
              P     LE LV +  +  +HD
Sbjct: 1631 SCPINCQLLEALVALYLQTNQHD 1653

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1294
255575080		1707	hypothetical protein RCOM_0464910 [Ricin	0.943	0.715	0.520	0.0
357503097		1723	hypothetical protein MTR_7g024000 [Medic	0.964	0.724	0.438	0.0
296086267		1570	unnamed protein product [Vitis vinifera]	0.698	0.575	0.522	0.0
297823849		1566	binding protein [Arabidopsis lyrata subs	0.906	0.749	0.438	0.0
240254612		1577	uncharacterized protein [Arabidopsis tha	0.897	0.736	0.432	0.0
3355487		1567	unknown protein [Arabidopsis thaliana]	0.889	0.734	0.425	0.0
359486637		2115	PREDICTED: uncharacterized protein LOC10	0.517	0.316	0.621	0.0
224100939		645	predicted protein [Populus trichocarpa]	0.456	0.916	0.603	0.0
449483951		646	PREDICTED: uncharacterized protein LOC10	0.491	0.984	0.533	0.0
449450155		646	PREDICTED: uncharacterized protein LOC10	0.491	0.984	0.529	0.0

>gi\|255575080\|ref\|XP_002528445.1\| hypothetical protein RCOM_0464910 [Ricinus communis] gi\|223532121\|gb\|EEF33928.1\| hypothetical protein RCOM_0464910 [Ricinus communis]	Back alignment and taxonomy information

 Score = 1254 bits (3246), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 673/1293 (52%), Positives = 867/1293 (67%), Gaps = 72/1293 (5%)

Query: 10   ISGDKIDGPSFNNVHQ--VNTASLGNFSGNGNVSGNSNVDIQSLLDMEELLDKELEEAQE 67
            ++G ++ G + N V Q  ++  +  N+ G  NVS ++NVD+ SL++MEE LDKELEEAQE
Sbjct: 477  LNGRRV-GEALNKVCQASLDNGNPWNYFGALNVSAHNNVDMNSLVEMEESLDKELEEAQE 535

Query: 68   HRRICEIEERKALKAYRKAQRALIEANASCTKLYRQRELCSARFRSFVMDDSNLLWSSGQ 127
             R ICEIEER ALKAYRKAQRAL+EAN+ C +LY +REL SA FRS V++DS LLWS+  
Sbjct: 536  QRHICEIEERNALKAYRKAQRALVEANSRCAELYHKRELYSAHFRSLVLNDSTLLWSTRN 595

Query: 128  HETLGNEFDLSKHVSGNMHLAPTSTHQMQSGYVGYNQGGYDSSMQCINGDLQNFSHEHEN 187
             E +G   + + + S N+ L P S+H  +  Y G NQ G+DS++QC +G      + H N
Sbjct: 596  REHVGIALNHTDNGSRNLELMPPSSHPERPDYDGRNQPGFDSNIQCASGAPLRTPYMHAN 655

Query: 188  GQNLGSEPCSEQDASTSELLPRKSKNALNGISPQSNELMVSADEEEEACQLDLESVQPNF 247
            GQNLGSEPCSE DASTSE L    K ALN  S  SN+   SAD++EE   LD E+VQPN+
Sbjct: 656  GQNLGSEPCSEPDASTSEPLHLNCKTALNIGSSPSNDPNFSADDDEETSPLDHETVQPNY 715

Query: 248  EYQQKDQIAEGRQISTDYRHNNKLSAVSSQDPLLLEATLRSELFARLGMRTFSKDSGSCF 307
            + QQ+++ + GRQ  +  + N   S   S D L LEATLRSELFARLG R  SK+S S  
Sbjct: 716  KIQQREESSVGRQKDSINQLNKISSDDCSPDSLTLEATLRSELFARLGRRNLSKNSSS-L 774

Query: 308  NVEPSVEQRADNDIGSDKMQMSNGS-VPSSGEQSQQHDIGGTDKPERRIQEAPFQIQDKC 366
            N++P+ E   +ND GS++ Q SNGS + S  E++Q+ D+GG D+ ER I   P  IQ++ 
Sbjct: 775  NLDPADELGTENDNGSERTQTSNGSFLVSEEERNQEFDLGGNDQHERNISGVPVNIQNQ- 833

Query: 367  LVEKGLLEFHSTYHSKGNKFPTTMNHSTSVLLSPP-ILRGAFGHLKSELCIALSNQSGNQ 425
              +K   E+ S  H            S +++ SP  +LR AFGH+K    +  +     +
Sbjct: 834  --KKNDDEYFSICHL-----------SATIIYSPNLVLRSAFGHMKDTFALTSTGFQSQK 880

Query: 426  HNHGRNFEI-EEVACVNSDKTQACYLIANSKPDIVKGYVGKEMGSYTCNLAIDPLWPLCM 484
                   +  +E   +N+++      IAN   +  K   G + GS+TCN  +DP WPLCM
Sbjct: 881  SERDDTCDCNDEAGSINTEEIDHGITIANPMEESAKDVCGNDFGSFTCNFIVDPFWPLCM 940

Query: 485  YELRGKCNNDECPWQHVKYFADRN--KNLHDDSDSAGCQIGSTIPQEHCNVGTKLSKGHD 542
            YELRGKCNND+CPWQHV+ F++ N  K+ HD SDS+ CQ+G T+ Q+ CN GT L     
Sbjct: 941  YELRGKCNNDQCPWQHVRDFSNGNVGKHQHDTSDSSDCQVGLTLHQKKCNGGT-LPNSQC 999

Query: 543  ILTPPTYIVGLDILKADSYQYQSVIARRHGLCWQKCLSVSLAISSIYPKDLPADLSLI-- 600
            +LT PTYIVGLDILK+DS+ + SV+   +G CWQKC S+ +A+S++  KDLPAD   +  
Sbjct: 1000 VLTAPTYIVGLDILKSDSHSFDSVVTWGNGQCWQKCFSICIALSNLLQKDLPADEPFLHG 1059

Query: 601  GDGRIECIGSWNRQSSFFRSRNGVLNKLKQVELSNEQCVEMALLILNQDANKLEGMKKAL 660
             DGRIE   +W++Q S+F+      NKL                +L           +AL
Sbjct: 1060 SDGRIEVQKNWDKQLSYFQK-----NKL----------FSHFFFLL-----------QAL 1093

Query: 661  SLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTP 720
            S+LSRA+EADP SEILWITYL I+Y N  SV KDDMFSY+VKHN+ SY +WLMYINSRT 
Sbjct: 1094 SVLSRAIEADPKSEILWITYLFIYYGNVKSVAKDDMFSYAVKHNDRSYGVWLMYINSRTR 1153

Query: 721  LNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRL 780
            L+ RL AY++AL+ LC   SA + DEM+ASACILD+FLQM+   CMSGN EKAIQ+I  L
Sbjct: 1154 LDDRLVAYESALTALCHQLSAYEKDEMYASACILDMFLQMMDFLCMSGNVEKAIQKICGL 1213

Query: 781  LIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAI 840
               AT S+  H L LSDIL  LTISDK +FWVCCVYLV+YRKLP+AV+   EC+KEL AI
Sbjct: 1214 FSVATNSDQCHCLLLSDILASLTISDKCMFWVCCVYLVMYRKLPEAVVHKFECDKELLAI 1273

Query: 841  DWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNG 900
            +WP V L D++KQ A KLIEMA+N V+LY N ES+  E +LRS   F + H  C+A L+G
Sbjct: 1274 EWPCVHLLDEDKQMATKLIEMAMNFVKLYVNSESVVNEASLRSLQYFGLCHTRCVAALHG 1333

Query: 901  LECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWN 960
            LEC  +LL++Y+KLYP+CLE VL+  R+Q  D     S GFEEAL  WPK  PGI CIWN
Sbjct: 1334 LECCRSLLDEYMKLYPACLEYVLVSVRVQMTD-----SEGFEEALRNWPKEAPGIHCIWN 1388

Query: 961  QYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFS 1020
            QY+EYALQ G  DFA  +  RWF+S   VQYSQ E  D +    SH+S E  S  + +F 
Sbjct: 1389 QYIEYALQKGGPDFAKRVTVRWFNSFSVVQYSQKEKLDAIGTSSSHASLELASVENTDFL 1448

Query: 1021 VSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINE 1080
             S+ N +D+MFGYLNLS+ +LL ND  EAR AID A KAAA   F+HC+REHAM LL+N+
Sbjct: 1449 TSSSNHLDLMFGYLNLSIAKLLHNDQIEARNAIDKAFKAAAPPFFEHCLREHAMFLLMND 1508

Query: 1081 SEPKEGAPISWQLKLLNSYLDRARSLPYLKLLPRQFINNIERPRLQQLIDNLLSPVSSDF 1140
            S+  E A IS  L +LN YLD AR+ P  + L R+FIN IE+PR++QLI           
Sbjct: 1509 SQLNEDASISKCLNVLNGYLDDARAFPVSEPLSRRFINKIEKPRVKQLI----------- 1557

Query: 1141 SLVNLVLEVCYGPSLLPRNFSKLKDLVDFVEGIMEIVPSNYQLAFSVFKLLNKDHNPNIT 1200
              VNLVLEV YGPSLLP+NF + K+LVDFVE I+EIVPSNYQLAFS  KLL+K    N  
Sbjct: 1558 --VNLVLEVWYGPSLLPQNFRQPKELVDFVEAILEIVPSNYQLAFSACKLLSKGE--NFI 1613

Query: 1201 DAVPESVLFWASSSLVSAIFHAVPVAPEYVWVEAAGILGNISSIEEISERFFKRALSVYP 1260
            D    S+L+WAS +LV++IFHA+P+APEYVWV+AAG L +I+ IE I ERF+++ALSVYP
Sbjct: 1614 DVPSGSMLYWASITLVNSIFHAIPIAPEYVWVDAAGFLDDIAGIELIYERFYRKALSVYP 1673

Query: 1261 FSIKLWKCYYDLSKTKGDLNTIVKAAREKGIEL 1293
            FSIKLW CYY+LSKT+G   ++++AAREKGIEL
Sbjct: 1674 FSIKLWNCYYNLSKTRGHATSVLEAAREKGIEL 1706

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|357503097\|ref\|XP_003621837.1\| hypothetical protein MTR_7g024000 [Medicago truncatula] gi\|355496852\|gb\|AES78055.1\| hypothetical protein MTR_7g024000 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|296086267\|emb\|CBI31708.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297823849\|ref\|XP_002879807.1\| binding protein [Arabidopsis lyrata subsp. lyrata] gi\|297325646\|gb\|EFH56066.1\| binding protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|240254612\|ref\|NP_181490.5\| uncharacterized protein [Arabidopsis thaliana] gi\|330254602\|gb\|AEC09696.1\| uncharacterized protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|3355487\|gb\|AAC27849.1\| unknown protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|359486637\|ref\|XP_002279244.2\| PREDICTED: uncharacterized protein LOC100253034 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224100939\|ref\|XP_002312077.1\| predicted protein [Populus trichocarpa] gi\|222851897\|gb\|EEE89444.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449483951\|ref\|XP_004156742.1\| PREDICTED: uncharacterized protein LOC101228328 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449450155\|ref\|XP_004142829.1\| PREDICTED: uncharacterized protein LOC101211906 [Cucumis sativus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1294
TAIR\|locus:2039797		1577	AT2G39580 "AT2G39580" [Arabido	0.479	0.393	0.501	4.4e-218
UNIPROTKB\|E1C1R6		1696	ZFC3H1 "Uncharacterized protei	0.220	0.168	0.245	1.1e-10
UNIPROTKB\|O60293		1989	ZFC3H1 "Zinc finger C3H1 domai	0.231	0.150	0.214	2e-07
UNIPROTKB\|E1BIV7		1988	LOC781886 "Uncharacterized pro	0.278	0.181	0.2	4.9e-07
UNIPROTKB\|E2QSB0		1984	ZFC3H1 "Uncharacterized protei	0.231	0.151	0.205	2.8e-06
UNIPROTKB\|F6UU41		1994	ZFC3H1 "Uncharacterized protei	0.231	0.150	0.205	2.9e-06
UNIPROTKB\|E9PTM2		1993	E9PTM2 "Uncharacterized protei	0.221	0.144	0.203	2.4e-05
UNIPROTKB\|F1MAP0		1993	F1MAP0 "Uncharacterized protei	0.221	0.144	0.203	2.4e-05

TAIR\|locus:2039797 AT2G39580 "AT2G39580" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1527 (542.6 bits), Expect = 4.4e-218, Sum P(3) = 4.4e-218
 Identities = 322/642 (50%), Positives = 421/642 (65%)

Query:   658 KALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINS 717
             +ALSLLS+ LE DPTSEILW  YLLI+++   S GKD MFSY VKH+  SY +WLMYINS
Sbjct:   950 QALSLLSQGLEGDPTSEILWAVYLLIYHAYEGSDGKD-MFSYGVKHSSRSYVIWLMYINS 1008

Query:   718 RTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRI 777
             R  LN +L AYD ALS LC  AS S  D  HASACILD+ LQM    C+SGN  KAIQRI
Sbjct:  1009 RGQLNDQLIAYDTALSALCNHASGSI-DRNHASACILDVLLQMFNLLCISGNVSKAIQRI 1067

Query:   778 SRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKEL 837
             S+L  PA  S+D     +S ILTCLT SDK +FWVCCVYLVIYRKLPD++++ LE EKEL
Sbjct:  1068 SKLQAPAAVSDDPDFSLMSHILTCLTYSDKCVFWVCCVYLVIYRKLPDSIIRRLEMEKEL 1127

Query:   838 FAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAV 897
               I+WP V L+ D KQ A++L +  + SVE +     ++K    R A  FA+N+   M  
Sbjct:  1128 LEIEWPTVNLDGDLKQMALRLFDKGMRSVE-HGTNNGIQK----RPAGLFALNYALFMIA 1182

Query:   898 LNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQC 957
             ++ LE   ++L+  ++LYP+CLEL L+  R+Q ++  D+ S GFEE L +  K    IQC
Sbjct:  1183 VDELESRRDILKASVQLYPTCLELKLLAVRMQSNELKDMFSSGFEELLKQEAKEASCIQC 1242

Query:   958 IWNQYVEYALQNGRHDFAAELMDRWFHSVWKV---QYSQVEISDPLVADMXXXXXXXXXX 1014
             IWNQY EYAL+ G +D A ELM RW+ SVW V   +Y  V  ++    D           
Sbjct:  1243 IWNQYAEYALEGGSYDLARELMSRWYGSVWDVLSHKYKTVRGNEEEGDD------NMLES 1296

Query:  1015 XXXXXXVSNRNQMDVMFGYLNLSLHRLLQNDWNEXXXXXXXXXXXXXSEHFKHCVREHAM 1074
                   V++ +Q+DVMFGYLNLSLH LLQ++W E              EHF HC+REHA+
Sbjct:  1297 ALSDLNVAS-DQVDVMFGYLNLSLHNLLQSNWTEARLAIDQALKATAPEHFMHCLREHAV 1355

Query:  1075 LLLINESEPKEGAPISWQLKLLNSYLDRARSLPYLKLLPRQFINN-IERPRLQQLIDNLL 1133
               LINE +      I+ Q++LLNSYLDRA SLP  + L  +FI+N  E+PR+++L+ NLL
Sbjct:  1356 FQLINELQATGEFSINLQMRLLNSYLDRASSLPVKEPLSWKFISNSAEKPRVRKLVTNLL 1415

Query:  1134 SPVSSDFSLVNLVLEVCYGPSLLPRNFSKLKDLVDFVEGIMEIVPSNYQLAFSVFKLLNK 1193
             +PVSS+  +VN+VLE  +GPSL+P   SK K+LVDFVE I+ +VPSNY LA SV KLL K
Sbjct:  1416 APVSSELFVVNVVLEAWHGPSLVPEKLSKQKELVDFVETILGLVPSNYPLALSVSKLLRK 1475

Query:  1194 DHNPNITDAVPESVLFWASSSLVSAIFHAVPVAPEYVWVEAAGILGNISSIEEISERFFK 1253
             +   + + +    + FWA  +L S I  A+PVAPEY+WVEA  I+ +I+  +  +ERF K
Sbjct:  1476 EEKQSDSGS-SSGIHFWAGLNLASTISCAIPVAPEYIWVEAGEIVSDINGFKTRAERFLK 1534

Query:  1254 RALSVYPFSIKLWKCYYDLSKTKGDLN--TIVKAAREKGIEL 1293
             +ALSVYP S+KLW+CY+ L K+  +     I +AAR+KGI L
Sbjct:  1535 KALSVYPMSVKLWRCYWSLCKSIEERRGIEIEEAARKKGITL 1576

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB\|E1C1R6 ZFC3H1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|O60293 ZFC3H1 "Zinc finger C3H1 domain-containing protein" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BIV7 LOC781886 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|E2QSB0 ZFC3H1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F6UU41 ZFC3H1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|E9PTM2 E9PTM2 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MAP0 F1MAP0 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00018526001	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (1159 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1294
pfam10650		23	pfam10650, zf-C3H1, Putative zinc-finger domain	7e-07
pfam08424		324	pfam08424, NRDE-2, NRDE-2, necessary for RNA inter	2e-04

>gnl\|CDD\|192649 pfam10650, zf-C3H1, Putative zinc-finger domain	Back alignment and domain information

 Score = 46.1 bits (110), Expect = 7e-07
 Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 1/23 (4%)

Query: 481 PLCMYELRG-KCNNDECPWQHVK 502
           PLC YEL G  CN+D+C +QH +
Sbjct: 1   PLCPYELTGGVCNDDDCEFQHFR 23

This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger. Length = 23

>gnl\|CDD\|219834 pfam08424, NRDE-2, NRDE-2, necessary for RNA interference	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1294
KOG4839		753	consensus Uncharacterized conserved protein [Funct	100.0
KOG4839		753	consensus Uncharacterized conserved protein [Funct	100.0
PF08424		321	NRDE-2: NRDE-2, necessary for RNA interference; In	99.58
TIGR02917		899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.21
TIGR02917		899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.1
PF10650		23	zf-C3H1: Putative zinc-finger domain; InterPro: IP	98.7
PRK10049		765	pgaA outer membrane protein PgaA; Provisional	98.64
KOG0495		913	consensus HAT repeat protein [RNA processing and m	98.63
PRK11447		1157	cellulose synthase subunit BcsC; Provisional	98.6
PRK15174		656	Vi polysaccharide export protein VexE; Provisional	98.54
PRK15174		656	Vi polysaccharide export protein VexE; Provisional	98.46
KOG0495		913	consensus HAT repeat protein [RNA processing and m	98.45
KOG2076		895	consensus RNA polymerase III transcription factor	98.31
PRK11788		389	tetratricopeptide repeat protein; Provisional	98.22
PRK11447		1157	cellulose synthase subunit BcsC; Provisional	98.2
PRK10049		765	pgaA outer membrane protein PgaA; Provisional	98.18
TIGR00990		615	3a0801s09 mitochondrial precursor proteins import	98.06
TIGR00990		615	3a0801s09 mitochondrial precursor proteins import	98.0
PRK11788		389	tetratricopeptide repeat protein; Provisional	97.9
KOG1915		677	consensus Cell cycle control protein (crooked neck	97.89
PF13429		280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	97.82
PRK12370		553	invasion protein regulator; Provisional	97.5
KOG1915		677	consensus Cell cycle control protein (crooked neck	97.37
KOG2047		835	consensus mRNA splicing factor [RNA processing and	97.34
TIGR02521		234	type_IV_pilW type IV pilus biogenesis/stability pr	97.25
PRK14574		822	hmsH outer membrane protein; Provisional	97.19
PF05843		280	Suf: Suppressor of forked protein (Suf); InterPro:	97.13
PRK12370		553	invasion protein regulator; Provisional	97.02
TIGR00540		409	hemY_coli hemY protein. This is an uncharacterized	97.0
PRK14574		822	hmsH outer membrane protein; Provisional	96.97
KOG1070		1710	consensus rRNA processing protein Rrp5 [RNA proces	96.91
PRK10370		198	formate-dependent nitrite reductase complex subuni	96.9
PF05843		280	Suf: Suppressor of forked protein (Suf); InterPro:	96.74
TIGR02521		234	type_IV_pilW type IV pilus biogenesis/stability pr	96.61
PF13429		280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	96.51
PLN03218		1060	maturation of RBCL 1; Provisional	96.5
KOG1258		577	consensus mRNA processing protein [RNA processing	96.38
KOG2047		835	consensus mRNA splicing factor [RNA processing and	96.23
PRK10747		398	putative protoheme IX biogenesis protein; Provisio	96.18
KOG2002		1018	consensus TPR-containing nuclear phosphoprotein th	96.06
cd05804		355	StaR_like StaR_like; a well-conserved protein foun	96.02
PRK11189		296	lipoprotein NlpI; Provisional	95.91
PLN03218		1060	maturation of RBCL 1; Provisional	95.83
TIGR00540		409	hemY_coli hemY protein. This is an uncharacterized	95.81
PRK09782		987	bacteriophage N4 receptor, outer membrane subunit;	95.77
PF12569		517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	95.67
PRK10370		198	formate-dependent nitrite reductase complex subuni	95.63
PF13414		69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	95.57
KOG1126		638	consensus DNA-binding cell division cycle control	95.56
PLN03077		857	Protein ECB2; Provisional	95.37
PRK09782		987	bacteriophage N4 receptor, outer membrane subunit;	95.34
PRK11189		296	lipoprotein NlpI; Provisional	95.32
cd00189		100	TPR Tetratricopeptide repeat domain; typically con	94.89
PRK15179		694	Vi polysaccharide biosynthesis protein TviE; Provi	94.56
PF09295		395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	94.5
PLN03081		697	pentatricopeptide (PPR) repeat-containing protein;	93.95
KOG1070		1710	consensus rRNA processing protein Rrp5 [RNA proces	93.9
TIGR02552		135	LcrH_SycD type III secretion low calcium response	93.88
PLN03081		697	pentatricopeptide (PPR) repeat-containing protein;	93.73
KOG4626		966	consensus O-linked N-acetylglucosamine transferase	93.73
TIGR03302		235	OM_YfiO outer membrane assembly lipoprotein YfiO.	93.32
KOG2002		1018	consensus TPR-containing nuclear phosphoprotein th	93.15
TIGR02552		135	LcrH_SycD type III secretion low calcium response	93.11
COG4235		287	Cytochrome c biogenesis factor [Posttranslational	93.04
cd00189		100	TPR Tetratricopeptide repeat domain; typically con	93.03
PLN02789		320	farnesyltranstransferase	92.54
PLN03077		857	Protein ECB2; Provisional	92.29
COG3063		250	PilF Tfp pilus assembly protein PilF [Cell motilit	92.18
smart00386		33	HAT HAT (Half-A-TPR) repeats. Present in several R	91.75
TIGR02795		119	tol_pal_ybgF tol-pal system protein YbgF. Members	91.73
PRK15359		144	type III secretion system chaperone protein SscB;	91.7
KOG1156		700	consensus N-terminal acetyltransferase [Chromatin	91.3
PF13432		65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	90.89
PF13432		65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	90.42
PRK15359		144	type III secretion system chaperone protein SscB;	90.2
KOG2396		568	consensus HAT (Half-A-TPR) repeat-containing prote	89.94
cd05804		355	StaR_like StaR_like; a well-conserved protein foun	89.69
PF14559		68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	89.35
COG3063		250	PilF Tfp pilus assembly protein PilF [Cell motilit	89.28
PF13371		73	TPR_9: Tetratricopeptide repeat	89.27
KOG1125		579	consensus TPR repeat-containing protein [General f	89.12
PF09976		145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	89.02
PRK10747		398	putative protoheme IX biogenesis protein; Provisio	88.91
KOG4162		799	consensus Predicted calmodulin-binding protein [Si	88.15
TIGR03302		235	OM_YfiO outer membrane assembly lipoprotein YfiO.	87.57
PLN03088		356	SGT1, suppressor of G2 allele of SKP1; Provisional	87.52
PF14559		68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	87.17
KOG2076		895	consensus RNA polymerase III transcription factor	86.71
PF13428		44	TPR_14: Tetratricopeptide repeat	86.63
PRK11906		458	transcriptional regulator; Provisional	86.51
smart00386		33	HAT HAT (Half-A-TPR) repeats. Present in several R	86.06
COG5191		435	Uncharacterized conserved protein, contains HAT (H	85.72
PRK11906		458	transcriptional regulator; Provisional	85.57
KOG2396		568	consensus HAT (Half-A-TPR) repeat-containing prote	85.55
PLN02789		320	farnesyltranstransferase	85.5
TIGR02795		119	tol_pal_ybgF tol-pal system protein YbgF. Members	84.66
PLN03088		356	SGT1, suppressor of G2 allele of SKP1; Provisional	84.62
KOG0553		304	consensus TPR repeat-containing protein [General f	84.19
PF08424		321	NRDE-2: NRDE-2, necessary for RNA interference; In	83.79
KOG1129		478	consensus TPR repeat-containing protein [General f	83.29
PF10300		468	DUF3808: Protein of unknown function (DUF3808); In	83.2
COG5191		435	Uncharacterized conserved protein, contains HAT (H	82.73
PRK15179		694	Vi polysaccharide biosynthesis protein TviE; Provi	82.67
KOG1492		377	consensus C3H1-type Zn-finger protein [General fun	80.89
PF13371		73	TPR_9: Tetratricopeptide repeat	80.73
PF09295		395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	80.06

>KOG4839 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

Probab=100.00  E-value=1.3e-51  Score=469.29  Aligned_cols=653  Identities=16%  Similarity=0.154  Sum_probs=506.8

Q ss_pred             CccccccccccccccccccCCCccccceeeeccccccCCCCCchhhhhcccccCCCCCCCCCCCcccccccCccccCCCc
Q 000768          456 PDIVKGYVGKEMGSYTCNLAIDPLWPLCMYELRGKCNNDECPWQHVKYFADRNKNLHDDSDSAGCQIGSTIPQEHCNVGT  535 (1294)
Q Consensus       456 ~~~t~~~~~~~~~s~t~s~~~dp~~plc~fel~g~Cn~~~c~wQH~~d~~~~~~~~h~~s~~~~~q~~~s~~~~~~n~~t  535 (1294)
                      -+++++.+  +..+.+.+++|.|.++.|.|.++|+||+++|-|||..|+++..         ..||++++|++.+++ |.
T Consensus        31 ~~~g~es~--d~~~~~qsn~I~P~~~p~tF~~t~~~~p~~~d~~~it~~~ls~---------~~F~~~~~~~~sl~~-~a   98 (753)
T KOG4839|consen   31 YYRGKESL--DLSSVSQSNMIEPDQCPCTFDLTGTCNPDDCDWQHITDYTLSR---------KLFQDILSYNLSLIG-CA   98 (753)
T ss_pred             cccccccC--CCccccccccCCCccCCcccccccCCCCcccccccccccccCh---------hhhhhhhhcChhhhc-Cc
Confidence            35666666  8899999999999999999999999999999999999999999         599999999999999 66


Q ss_pred             cccCcccccCCC-cc-----eeccccccccccchhhhh-------------hhccccccccccceeecccccCCCCCccc
Q 000768          536 KLSKGHDILTPP-TY-----IVGLDILKADSYQYQSVI-------------ARRHGLCWQKCLSVSLAISSIYPKDLPAD  596 (1294)
Q Consensus       536 ~~s~~~~i~~~P-tY-----~Vg~d~m~~D~~~~~~V~-------------a~~~~q~Wqk~fs~s~a~s~~~~r~lp~D  596 (1294)
                      +.++...++-.- +|     .++.|+|.+|++..+.|.             +.|+.+.|++.|. .=|++.+   .++.|
T Consensus        99 ~t~~~~~~taSSektvsK~~~~~e~~~~~n~nk~~~~s~~~~ss~~~~~~q~~Kd~r~~K~t~~-rrp~~~s---sdT~~  174 (753)
T KOG4839|consen   99 ETSTNEEITASSEKTVSKLFGVNEDRMSMNQNKVLLVSNINESSGHTPPFQTYKDKRKWKPTFW-RRPISDS---SDTSD  174 (753)
T ss_pred             ccCCccccccchhhhHHhhhCCchhhhccchHHHHHHHhhhhcccCCCCccchhhhccCCCccc-ccccccc---cccch
Confidence            777777666544 33     399999999999999776             7789999998876 2111111   11212


Q ss_pred             c----------ccCC-CCce-----EEccCcccccchhhhhhhHHh---hhhhccccHHHHHHHHHHHhhhccch-HHHH
Q 000768          597 L----------SLIG-DGRI-----ECIGSWNRQSSFFRSRNGVLN---KLKQVELSNEQCVEMALLILNQDANK-LEGM  656 (1294)
Q Consensus       597 ~----------~~~g-D~~i-----~v~~~~~rq~s~f~~~~di~n---~vle~p~D~elwlkLAl~~Lnq~~n~-~e~l  656 (1294)
                      +          .+-| |-..     .|+.+.++   |--++|++++   -|+++|.-+|||++.|+++|+++++- ++.+
T Consensus       175 ~e~se~pkk~~~~s~~~~~~p~~D~~vt~~~~~---~~ne~d~~~~le~gV~~N~s~~~l~~ks~v~~l~~~eG~~SsS~  251 (753)
T KOG4839|consen  175 EEQSEGPKKYAFQSENQINVPALDTVVTPDDVR---YTNETDDIANLEAGVLENPSHVQLWLKSAVKYLNQNEGECSSSL  251 (753)
T ss_pred             hcccccchhhhccCcccccCccccceecccccc---cccchhHHHhhccccccChHHHhhccchhhhhhhhhcCccchhh
Confidence            1          1111 1111     26788888   6558888877   89999999999999999999997665 8888


Q ss_pred             HH----HHHHH--HHHhhcCC-CChHHHHHHHHHHhcCCCCCCccchHHHhhhcCCccHHHHHHHHhhccCccchHHHHH
Q 000768          657 KK----ALSLL--SRALEADP-TSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYD  729 (1294)
Q Consensus       657 ~~----AL~vL--SRALEan~-~S~~LW~~YL~Ly~q~~~~ee~~eM~e~AVq~~~~SY~LWL~YLnsr~~fddr~~ay~  729 (1294)
                      ++    +||++  +|+||.+. ++++.|+|||.||.  |+++..++||.+||++. +.|+-||.|+.-+++|..+.++|.
T Consensus       252 ~sqgsl~ln~~kaaR~le~~KiD~~~s~~h~L~~~n--Gt~~v~~e~~n~~~~~l-p~~~~~~~~~~p~st~~p~~~v~e  328 (753)
T KOG4839|consen  252 DSQGSLALNVLKAARALENNKIDNPESWCHYLRLFN--GTKDVVQEMCNTAVEYL-PDYQSFWTFLHPESTFEPKDYVCE  328 (753)
T ss_pred             hccccceeehhhhhhHHhhccCCCccchhheeeccC--CChhHHHHhhhhhhhcc-cccccchhccCCCCcCCcchhhHh
Confidence            98    99999  99999999 99999999999997  89999999999999995 999999999999999999999999


Q ss_pred             HHHHHHhccccCCCCCccchhhHHHHHHHHHHHHHhhcccHHHHHHHHHhhccccCCCCCCccccHHHHHhhcCcCCcch
Q 000768          730 AALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLI  809 (1294)
Q Consensus       730 raL~~L~~~aSa~~~d~~~~SA~iLDl~LQml~~Lc~SGn~~kAI~~l~~lL~~a~~sd~p~~~sls~Il~~LT~sDRci  809 (1294)
                      +++.++++.+-.+..  ...|..+|+..+.-.+.-.++|+-..|+++++++.+.+..      .+   +.+.|-..|+|+
T Consensus       329 ~~~~~~~g~dk~~~~--~~~s~~llE~~~~n~~~~~~~~~rs~~lA~lrnae~~~~r------~~---~~~~Li~rd~~l  397 (753)
T KOG4839|consen  329 RMLEFLMGADKQETS--NILSFQLLEALLFNVQLHIFTGRRSSALAILRNAEKSANR------GI---VAEYLITRDRCL  397 (753)
T ss_pred             hhhhhhhccchhhhH--HHHHHHHhhhchhhhhhhhhhhhhhHHHHHHHhhHHHhhh------ch---hhhhheehhhhh
Confidence            999999985543211  1123333333333333334899999999988888887665      23   578999999999


Q ss_pred             HHHHHHH-HHHhccCch-hHhhhcc------cccccccccCCCCCCCcchHHHHHHHHHHHHHhhccccCCCcccccccc
Q 000768          810 FWVCCVY-LVIYRKLPD-AVLQLLE------CEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNL  881 (1294)
Q Consensus       810 ~WL~cih-Lv~f~~LP~-~i~d~~e------~~KElf~I~W~~v~l~~~~~~~llkLfe~Av~s~~~~~~~Esl~~~~~l  881 (1294)
                      +|..+++ .++|..||. .|.|+.+      ++-|-+..+|+++++++++++ +.++++.|.+.|.    +|++.-+++|
T Consensus       398 ~wp~~~pts~~~~~Lpsv~~a~~sn~~~sh~~n~E~vv~~~~~~~~v~~np~-~s~~gas~s~a~t----~~s~~te~rL  472 (753)
T KOG4839|consen  398 AWPAYIPTSIEFNILPSVKFADPSNDNPSHIVNTESVVMPWQAVQDVKTNPD-LSAVGASASKACT----DESLATEERL  472 (753)
T ss_pred             cccccCCcchhhcccCCCcccccccCCcccccccceeccCCchhhhhccCCc-hhhccccccccCC----CcchhHHHHH
Confidence            9999999 999999999 8888877      577889999999999999999 9999999999999    9999999999


Q ss_pred             chhhhhHhhHHHHHHH---hhhHHHHHHHHHHHHHhCcchhHHHHHHHHhhccccC-Ccc-HHHHHHHHh--cCCCCCCc
Q 000768          882 RSAHCFAVNHIWCMAV---LNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFG-DLS-SVGFEEALI--KWPKGVPG  954 (1294)
Q Consensus       882 r~aq~lalN~I~c~~a---le~~E~a~~Lc~kyvelyP~c~eLvL~sArLqk~d~~-~~~-~~~Feeal~--~wPKea~G  954 (1294)
                      ..+.++.+++|.....   .++.+++.++|..++|.||-.|+++.+++.++-.-+. +.. -.+|..+|+  +.|+++| 
T Consensus       473 eap~l~~te~iav~heEHpa~~~~~~~d~l~~l~Es~~g~c~~~etlV~~~~e~~~~~~~R~kv~L~~~eGk~n~q~~p-  551 (753)
T KOG4839|consen  473 EAPLLLYTEMIAVHHEEHPAERYEAAMDLLKSLLESCPGNCQLLETLVALYLETNQHDKARAKVWLTAFEGKKNPQNAP-  551 (753)
T ss_pred             hccccCccccccchhhhhhHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHhhhcchhhhhhHHHHHhhhccCCccCCc-
Confidence            9999999999999999   9999999999999999999999999888877732222 111 126677777  6777776 


Q ss_pred             hHHHHHHHHHHHHhcCChhhHHHHHH-HHhhhhhhcccccccCCccccCCCCCCCCCCCCCCCCcccCCCCcch-----h
Q 000768          955 IQCIWNQYVEYALQNGRHDFAAELMD-RWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQM-----D 1028 (1294)
Q Consensus       955 iQ~IWnQy~e~aLq~~~~d~A~~il~-rwf~s~~k~~~~~~~~~d~~~~~~s~~sl~~~~~s~~d~l~~~s~q~-----D 1028 (1294)
                        .-+..|.++++++-+ +.-.+.++ -+-.++++.+.....-.|-+..    ....+|+.+++-.++-+.++.     -
T Consensus       552 --~e~~~~~~sI~ens~-~~d~~s~rilss~s~~~Pgf~~t~~~dkvp~----l~~~~gP~yi~~~~~y~~r~~~~f~e~  624 (753)
T KOG4839|consen  552 --VEYHMCKFSILENSG-DNDLPSLRILSSASFFKPGFEKTNNLDKVPY----LLNIPGPIYIPSRLCYGNRDDDMFNEQ  624 (753)
T ss_pred             --ccchhHHHHHHhccc-cccchhhhhhhhhhhcCCcccccchhhhcch----hhcCCCchhhhhhhcccchhhHHHhhh
Confidence              555577778888844 54444444 3445566666555444444331    233455555553334445554     4


Q ss_pred             HHHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhc-CcCCCCCCCchHHHHHHHhHHHHhhccCc
Q 000768         1029 VMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLI-NESEPKEGAPISWQLKLLNSYLDRARSLP 1107 (1294)
Q Consensus      1029 ~mf~lLNlsL~~~Lq~~~~EA~~A~ekALkaa~~e~~~hcwrEya~F~~~-~~~~~~~d~~~~~~~~ll~~yL~~~~~lp 1107 (1294)
                      ++|-|++||+++-|+.+.-|..-|||.|.|  .=...+-.||.|..|.+. ...+++.+.+...+.   ++         
T Consensus       625 Vpy~~~i~~y~~~lk~~p~~~~c~YE~~gg--rCn~d~c~w~hf~df~~~g~~~~~~~~~~r~~~~---td---------  690 (753)
T KOG4839|consen  625 VPYLWLIYCYCHPLKSSPKETVCAYEAAGG--RCNIDQCIWMHFLDFANNGRAAGSRNKVQRFKFF---TD---------  690 (753)
T ss_pred             hhhHhhhheecccccCCcchhHHHHHhccC--ccCchhhhHHHHHHhhcccchhhhcCchhhhccc---ch---------
Confidence            788899999999999999999999999988  334456779999999987 666777666554433   22         


Q ss_pred             ccccchhHhhhcCCchhHHHHHhhccCCCC-CchhhHHHHHHhhhCCCCccccccCcchhHHHHHHHHhhcCchhHHHH
Q 000768         1108 YLKLLPRQFINNIERPRLQQLIDNLLSPVS-SDFSLVNLVLEVCYGPSLLPRNFSKLKDLVDFVEGIMEIVPSNYQLAF 1185 (1294)
Q Consensus      1108 ~~~pLsrrfl~~I~k~rv~~li~~~l~P~s-sd~sl~N~Vle~~yg~SllPq~~~~~K~lvdfvE~imE~~P~Ny~LAL 1185 (1294)
                          +..|+..+++     +.+|..|+|+. -.|.|| +|.  +++.+++|.+.| .|    ..++.+.+||+|..+|+
T Consensus       691 ----~v~~~s~k~~-----~~ldivfs~td~~s~~~~-~vd--f~~~~~v~~~~H-~~----~w~~~~s~~pa~s~s~~  752 (753)
T KOG4839|consen  691 ----LVNRCSVKVP-----ARLDIVFSSTDYWSYEFH-RVD--FFYLSCVPKTQH-SK----TWERFCSVMPANSGSAL  752 (753)
T ss_pred             ----hhhhcccccc-----cccccccccccccccccc-eee--EEEEeeeeHHHH-hH----HHHHHHhhccccccccc
Confidence                3444544433     44779999998 348999 566  345888998876 34    45566699999998876

>KOG4839 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function	Back alignment and domain information

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein	Back alignment and domain information

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein	Back alignment and domain information

>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger	Back alignment and domain information

>PRK10049 pgaA outer membrane protein PgaA; Provisional	Back alignment and domain information

>KOG0495 consensus HAT repeat protein [RNA processing and modification]	Back alignment and domain information

>PRK11447 cellulose synthase subunit BcsC; Provisional	Back alignment and domain information

>PRK15174 Vi polysaccharide export protein VexE; Provisional	Back alignment and domain information

>PRK15174 Vi polysaccharide export protein VexE; Provisional	Back alignment and domain information

>KOG0495 consensus HAT repeat protein [RNA processing and modification]	Back alignment and domain information

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]	Back alignment and domain information

>PRK11788 tetratricopeptide repeat protein; Provisional	Back alignment and domain information

>PRK11447 cellulose synthase subunit BcsC; Provisional	Back alignment and domain information

>PRK10049 pgaA outer membrane protein PgaA; Provisional	Back alignment and domain information

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)	Back alignment and domain information

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)	Back alignment and domain information

>PRK11788 tetratricopeptide repeat protein; Provisional	Back alignment and domain information

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B	Back alignment and domain information

>PRK12370 invasion protein regulator; Provisional	Back alignment and domain information

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]	Back alignment and domain information

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW	Back alignment and domain information

>PRK14574 hmsH outer membrane protein; Provisional	Back alignment and domain information

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins	Back alignment and domain information

>PRK12370 invasion protein regulator; Provisional	Back alignment and domain information

>TIGR00540 hemY_coli hemY protein	Back alignment and domain information

>PRK14574 hmsH outer membrane protein; Provisional	Back alignment and domain information

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]	Back alignment and domain information

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional	Back alignment and domain information

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins	Back alignment and domain information

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW	Back alignment and domain information

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B	Back alignment and domain information

>PLN03218 maturation of RBCL 1; Provisional	Back alignment and domain information

>KOG1258 consensus mRNA processing protein [RNA processing and modification]	Back alignment and domain information

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]	Back alignment and domain information

>PRK10747 putative protoheme IX biogenesis protein; Provisional	Back alignment and domain information

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]	Back alignment and domain information

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals	Back alignment and domain information

>PRK11189 lipoprotein NlpI; Provisional	Back alignment and domain information

>PLN03218 maturation of RBCL 1; Provisional	Back alignment and domain information

>TIGR00540 hemY_coli hemY protein	Back alignment and domain information

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional	Back alignment and domain information

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala	Back alignment and domain information

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional	Back alignment and domain information

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A	Back alignment and domain information

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PLN03077 Protein ECB2; Provisional	Back alignment and domain information

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional	Back alignment and domain information

>PRK11189 lipoprotein NlpI; Provisional	Back alignment and domain information

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Back alignment and domain information

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional	Back alignment and domain information

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi	Back alignment and domain information

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional	Back alignment and domain information

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]	Back alignment and domain information

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD	Back alignment and domain information

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional	Back alignment and domain information

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]	Back alignment and domain information

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO	Back alignment and domain information

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD	Back alignment and domain information

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Back alignment and domain information

>PLN02789 farnesyltranstransferase	Back alignment and domain information

>PLN03077 Protein ECB2; Provisional	Back alignment and domain information

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]	Back alignment and domain information

>smart00386 HAT HAT (Half-A-TPR) repeats	Back alignment and domain information

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF	Back alignment and domain information

>PRK15359 type III secretion system chaperone protein SscB; Provisional	Back alignment and domain information

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]	Back alignment and domain information

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B	Back alignment and domain information

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B	Back alignment and domain information

>PRK15359 type III secretion system chaperone protein SscB; Provisional	Back alignment and domain information

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]	Back alignment and domain information

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals	Back alignment and domain information

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A	Back alignment and domain information

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]	Back alignment and domain information

>PF13371 TPR_9: Tetratricopeptide repeat	Back alignment and domain information

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]	Back alignment and domain information

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function	Back alignment and domain information

>PRK10747 putative protoheme IX biogenesis protein; Provisional	Back alignment and domain information

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]	Back alignment and domain information

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO	Back alignment and domain information

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional	Back alignment and domain information

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A	Back alignment and domain information

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]	Back alignment and domain information

>PF13428 TPR_14: Tetratricopeptide repeat	Back alignment and domain information

>PRK11906 transcriptional regulator; Provisional	Back alignment and domain information

>smart00386 HAT HAT (Half-A-TPR) repeats	Back alignment and domain information

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]	Back alignment and domain information

>PRK11906 transcriptional regulator; Provisional	Back alignment and domain information

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]	Back alignment and domain information

>PLN02789 farnesyltranstransferase	Back alignment and domain information

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF	Back alignment and domain information

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional	Back alignment and domain information

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]	Back alignment and domain information

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function	Back alignment and domain information

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]	Back alignment and domain information

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans	Back alignment and domain information

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]	Back alignment and domain information

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional	Back alignment and domain information

>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]	Back alignment and domain information

>PF13371 TPR_9: Tetratricopeptide repeat	Back alignment and domain information

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1294
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-13
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-12
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05
4e6h_A		679	MRNA 3'-END-processing protein RNA14; HAT domain,	4e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 72.6 bits (177), Expect = 6e-13
 Identities = 120/820 (14%), Positives = 235/820 (28%), Gaps = 278/820 (33%)

Query: 424  NQHNHGRNFEIEEVACVNSDKTQACYLIANSKPDIVKGYVGKEMGSYTCNLAIDPLWPLC 483
            + H+H  +FE  E      D      +++  +   V         ++ C    D      
Sbjct: 1    HHHHHHMDFETGEHQYQYKD------ILSVFEDAFVD--------NFDCKDVQD------ 40

Query: 484  MYELRGKCNNDECPWQHVKYFADRNKNLHDDSDSAGCQIGSTIPQEHCNVGTKLSKGHDI 543
                +   + +E    H+                        +        T LSK  ++
Sbjct: 41   --MPKSILSKEEI--DHI------------------IMSKDAVSGTLRLFWTLLSKQEEM 78

Query: 544  LTPPTYIVGLDILKADSYQYQSVIARRHGLCWQKCLSVSLAISSIYPKDLPADLSLIGDG 603
            +      V  ++L+ + Y+            +   L   +      P       S++   
Sbjct: 79   V---QKFVE-EVLRIN-YK------------F---LMSPIKTEQRQP-------SMMTRM 111

Query: 604  RIECIGS-WNRQSSF---FRSRNGVLNKLKQVELSNEQCVEMALLILNQDAN-KLEGMK- 657
             IE     +N    F     SR     KL+Q           ALL L    N  ++G+  
Sbjct: 112  YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ-----------ALLELRPAKNVLIDGVLG 160

Query: 658  --K----ALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALW 711
              K        LS  ++     +I W+            +   +           S    
Sbjct: 161  SGKTWVALDVCLSYKVQCKMDFKIFWLN-----------LKNCN-----------SPETV 198

Query: 712  LMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTE 771
            L  +     L +++D            +  S   ++                        
Sbjct: 199  LEMLQK---LLYQID------PNWTSRSDHSSNIKL---------------------RIH 228

Query: 772  KAIQRISRLLIPATGSNDRHSLF-LSDI----------LTC---LTISDKLIFWVCCVYL 817
                 + RLL         + L  L ++          L+C   LT   K +        
Sbjct: 229  SIQAELRRLL---KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT 285

Query: 818  VIYRKLPDAVLQLLECE-KELFA--IDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGES 874
              +  L    + L   E K L    +D  P     D  +  +      ++ +      ES
Sbjct: 286  TTHISLDHHSMTLTPDEVKSLLLKYLDCRP----QDLPREVLTTNPRRLSII-----AES 336

Query: 875  LEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFG 934
            +         +     H+ C  +   +E S+N+LE      P+            +  F 
Sbjct: 337  IRDGLA-TWDN---WKHVNCDKLTTIIESSLNVLE------PA----------EYRKMFD 376

Query: 935  DLSSVGFEE-ALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQ 993
             L SV F   A I  P  +  +  IW   ++  +         +L           +YS 
Sbjct: 377  RL-SV-FPPSAHI--PTIL--LSLIWFDVIKSDVM----VVVNKL----------HKYSL 416

Query: 994  VEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAI 1053
            VE             P+ ++ S P   +  + +++  +     +LHR + + +N      
Sbjct: 417  VE-----------KQPKESTISIPSIYLELKVKLENEY-----ALHRSIVDHYN------ 454

Query: 1054 DAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLLNSY-LDRARSLPYLKLL 1112
                K   S+                   P         +     + L        + L 
Sbjct: 455  --IPKTFDSDDL---------------IPPYLDQYFYSHI----GHHLKNIEHPERMTLF 493

Query: 1113 PRQFINNIERPR-LQQLIDNLLSPVSSDFSLVNLVLEV-CYGPSLL---PRNFSKLKDLV 1167
               F++     R L+Q I +  +  ++  S++N + ++  Y P +    P+    +  ++
Sbjct: 494  RMVFLDF----RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL 549

Query: 1168 DFVEGIME-IVPSNY----QLAFSVFKLLNKDHNPNITDA 1202
            DF+  I E ++ S Y    ++A      L  +      +A
Sbjct: 550  DFLPKIEENLICSKYTDLLRIA------LMAEDEAIFEEA 583

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Length = 679	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1294
d2onda1		308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.02
d2onda1		308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.77
d1w3ba_		388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	98.51
d1fcha_		323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.35
d1w3ba_		388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	97.53
d1dcea1		334	Rab geranylgeranyltransferase alpha-subunit, N-ter	96.5
d1fcha_		323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	95.45
d1a17a_		159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	93.93
d2h6fa1		315	Protein farnesyltransferase alpha-subunit {Human (	93.83
d1hz4a_		366	Transcription factor MalT domain III {Escherichia	93.82
d1hxia_		112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	93.43
d2h6fa1		315	Protein farnesyltransferase alpha-subunit {Human (	92.9
d1elwa_		117	Hop {Human (Homo sapiens) [TaxId: 9606]}	92.45
d1p5qa1		170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	92.21
d1a17a_		159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	91.4
d2c2la1		201	STIP1 homology and U box-containing protein 1, STU	91.39
d2fbna1		153	Putative 70 kda peptidylprolyl isomerase PFL2275c	91.33
d1hxia_		112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	90.47
d1elwa_		117	Hop {Human (Homo sapiens) [TaxId: 9606]}	88.63
d1hh8a_		192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	86.86
d1kt1a1		168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	84.56
d1xnfa_		259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	82.97
d1xnfa_		259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	81.77
d1zu2a1		145	Mitochondrial import receptor subunit tom20-3 {Tha	81.55
d1zbpa1		264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	80.57

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.02  E-value=7.4e-08  Score=72.32  Aligned_cols=133  Identities=11%  Similarity=-0.021  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC--CCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf             756999999963189999999999995964268999998730012--688627899999960999998067999999999
Q 000768          888 AVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHD--FGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEY  965 (1294)
Q Consensus       888 avN~I~c~~ale~~E~a~~Lc~kyvelyP~c~eLvL~sArLqk~d--~~~~~~~~Feeal~~wPKea~GiQ~IWnQy~e~  965 (1294)
                      .+.++.+..-..+++.|+.++.++++.+|.+.++....|.+....  ..+.+...|+.++...|....    +|..|+.|
T Consensus       137 w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~----~w~~y~~~  212 (308)
T d2onda1         137 YIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPE----YVLAYIDY  212 (308)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHH----HHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
T ss_conf             99999999982786889999999998088867999999999987655778999999999986100388----99999999


Q ss_pred             HHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf             99269924589999999653210145455678545578899999999899976667987302579999999978841025
Q 000768          966 ALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQND 1045 (1294)
Q Consensus       966 aLq~~~~d~A~~il~rwf~s~~k~~~~~~~~~d~~~~~~s~~sl~~~~~s~~d~l~~~s~q~D~mf~lLNlsL~~~Lq~~ 1045 (1294)
                      ....|..+-|+.+..+....+                                    +.+..+....|..+..++-.+|+
T Consensus       213 ~~~~g~~~~aR~~fe~ai~~~------------------------------------~~~~~~~~~iw~~~~~fE~~~G~  256 (308)
T d2onda1         213 LSHLNEDNNTRVLFERVLTSG------------------------------------SLPPEKSGEIWARFLAFESNIGD  256 (308)
T ss_dssp             HHTTCCHHHHHHHHHHHHHSS------------------------------------SSCGGGCHHHHHHHHHHHHHHSC
T ss_pred             HHHCCCHHHHHHHHHHHHHHC------------------------------------CCCHHHHHHHHHHHHHHHHHCCC
T ss_conf             998698689999999999827------------------------------------89868999999999999998499


Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             899999999999765
Q 000768         1046 WNEARLAIDAALKAA 1060 (1294)
Q Consensus      1046 ~~EA~~A~ekALkaa 1060 (1294)
                      ...+...++++....
T Consensus       257 ~~~~~~~~~r~~~~~  271 (308)
T d2onda1         257 LASILKVEKRRFTAF  271 (308)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHC
T ss_conf             999999999999877

PyMOL of d2onda1

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}	Back information, alignment and structure

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}	Back information, alignment and structure

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}	Back information, alignment and structure

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}	Back information, alignment and structure

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}	Back information, alignment and structure